Query 003317
Match_columns 831
No_of_seqs 463 out of 4134
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 21:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.1E-93 8.8E-98 826.0 51.7 793 15-824 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-59 3.6E-64 576.8 50.5 599 153-806 184-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-45 5.5E-50 388.0 18.4 281 158-441 1-286 (287)
4 PLN03210 Resistant to P. syrin 99.7 1.1E-17 2.4E-22 207.1 15.3 89 692-791 824-912 (1153)
5 PLN00113 leucine-rich repeat r 99.7 3.9E-17 8.4E-22 202.3 13.2 272 513-803 116-412 (968)
6 KOG0444 Cytoskeletal regulator 99.7 6E-19 1.3E-23 186.3 -4.1 260 509-787 97-377 (1255)
7 PLN00113 leucine-rich repeat r 99.7 1.3E-16 2.8E-21 197.6 13.1 272 510-804 159-437 (968)
8 KOG4194 Membrane glycoprotein 99.6 1.9E-17 4.2E-22 174.2 -0.0 278 515-812 125-462 (873)
9 KOG0444 Cytoskeletal regulator 99.6 5.3E-18 1.1E-22 179.2 -5.3 242 534-805 100-372 (1255)
10 KOG4194 Membrane glycoprotein 99.5 1E-14 2.2E-19 154.0 0.7 196 514-725 101-302 (873)
11 KOG0472 Leucine-rich repeat pr 99.4 5.5E-15 1.2E-19 149.4 -2.5 256 509-783 200-539 (565)
12 KOG4658 Apoptotic ATPase [Sign 99.4 6.3E-12 1.4E-16 148.1 18.3 238 536-790 544-788 (889)
13 PRK04841 transcriptional regul 99.4 7.6E-11 1.7E-15 145.5 25.8 293 151-484 12-332 (903)
14 KOG0472 Leucine-rich repeat pr 99.4 4.2E-15 9E-20 150.3 -9.6 240 510-803 63-305 (565)
15 PRK15387 E3 ubiquitin-protein 99.3 6.9E-12 1.5E-16 144.5 13.5 238 492-783 203-456 (788)
16 PRK00411 cdc6 cell division co 99.3 6.9E-10 1.5E-14 122.9 26.4 293 153-465 30-358 (394)
17 PRK15370 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 142.5 10.6 222 515-783 199-426 (754)
18 KOG0618 Serine/threonine phosp 99.2 2.9E-13 6.3E-18 150.8 -4.6 242 515-784 241-488 (1081)
19 KOG0618 Serine/threonine phosp 99.2 5.4E-13 1.2E-17 148.7 -3.0 260 515-803 219-484 (1081)
20 TIGR03015 pepcterm_ATPase puta 99.2 2.7E-09 6E-14 111.5 24.7 181 172-361 41-242 (269)
21 PRK15387 E3 ubiquitin-protein 99.2 3.1E-11 6.7E-16 139.2 10.2 231 516-803 202-453 (788)
22 TIGR02928 orc1/cdc6 family rep 99.2 2.1E-08 4.5E-13 109.9 29.0 296 153-465 15-350 (365)
23 KOG0617 Ras suppressor protein 99.2 7.4E-13 1.6E-17 118.7 -5.2 159 510-710 28-189 (264)
24 PF01637 Arch_ATPase: Archaeal 99.2 1.9E-10 4.1E-15 117.6 11.5 194 155-356 1-233 (234)
25 PRK15370 E3 ubiquitin-protein 99.1 6.7E-11 1.5E-15 137.4 8.8 239 515-803 178-423 (754)
26 TIGR00635 ruvB Holliday juncti 99.1 6.1E-09 1.3E-13 110.9 20.6 273 153-465 4-289 (305)
27 COG2909 MalT ATP-dependent tra 99.1 5.9E-09 1.3E-13 116.9 20.2 301 146-486 12-340 (894)
28 PRK00080 ruvB Holliday junctio 99.1 5.2E-09 1.1E-13 112.1 18.8 273 153-465 25-310 (328)
29 KOG4237 Extracellular matrix p 99.0 3.7E-11 8E-16 122.0 0.7 262 493-781 49-355 (498)
30 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.3E-14 102.9 11.9 143 175-325 1-163 (166)
31 KOG0617 Ras suppressor protein 98.9 3E-11 6.5E-16 108.5 -4.5 85 528-622 24-110 (264)
32 cd00116 LRR_RI Leucine-rich re 98.9 3.1E-10 6.6E-15 122.1 0.6 209 513-727 21-261 (319)
33 KOG3207 Beta-tubulin folding c 98.9 3.2E-10 6.9E-15 117.0 0.4 205 512-725 118-335 (505)
34 COG2256 MGS1 ATPase related to 98.9 3.5E-07 7.6E-12 94.6 20.9 221 153-403 24-265 (436)
35 PRK06893 DNA replication initi 98.8 3.9E-08 8.5E-13 99.3 12.7 152 173-358 38-204 (229)
36 PTZ00112 origin recognition co 98.7 1.3E-06 2.7E-11 99.3 22.5 207 153-361 755-986 (1164)
37 COG3899 Predicted ATPase [Gene 98.7 2.2E-07 4.8E-12 110.6 17.3 309 154-484 1-386 (849)
38 PRK13342 recombination factor 98.7 1.7E-07 3.7E-12 103.6 14.9 175 153-358 12-197 (413)
39 KOG4237 Extracellular matrix p 98.7 1E-09 2.2E-14 111.8 -3.1 236 501-756 78-354 (498)
40 KOG4341 F-box protein containi 98.7 1.7E-09 3.8E-14 111.1 -1.6 279 516-808 139-439 (483)
41 cd00116 LRR_RI Leucine-rich re 98.7 2.5E-09 5.5E-14 115.0 -0.5 238 534-782 20-288 (319)
42 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.9E-07 6.2E-12 93.4 13.9 167 158-358 22-202 (226)
43 PRK04195 replication factor C 98.6 2.8E-06 6E-11 95.9 22.1 243 153-441 14-273 (482)
44 KOG3207 Beta-tubulin folding c 98.6 6E-09 1.3E-13 107.8 -0.2 210 555-779 118-333 (505)
45 KOG2028 ATPase related to the 98.5 3.9E-07 8.4E-12 92.1 10.2 174 153-352 138-331 (554)
46 PF14580 LRR_9: Leucine-rich r 98.5 3.9E-08 8.4E-13 93.2 3.0 109 511-627 15-126 (175)
47 PRK07003 DNA polymerase III su 98.5 4.2E-06 9.1E-11 94.8 19.4 195 153-359 16-223 (830)
48 TIGR02903 spore_lon_C ATP-depe 98.5 3.4E-05 7.5E-10 89.0 27.2 203 153-360 154-398 (615)
49 PRK05564 DNA polymerase III su 98.5 4.3E-06 9.3E-11 89.0 16.8 177 153-355 4-188 (313)
50 PRK12402 replication factor C 98.5 3.2E-06 7E-11 91.5 15.8 196 153-356 15-225 (337)
51 PF13173 AAA_14: AAA domain 98.5 4.3E-07 9.3E-12 82.7 7.4 120 174-317 2-127 (128)
52 PRK08727 hypothetical protein; 98.5 4.2E-06 9E-11 84.7 15.3 168 153-354 19-201 (233)
53 cd00009 AAA The AAA+ (ATPases 98.5 1.3E-06 2.8E-11 81.9 10.9 122 156-295 1-130 (151)
54 COG1474 CDC6 Cdc6-related prot 98.4 1.9E-05 4.2E-10 84.6 20.5 201 153-357 17-238 (366)
55 PRK14960 DNA polymerase III su 98.4 1.2E-05 2.5E-10 90.4 19.2 191 153-355 15-217 (702)
56 PRK14961 DNA polymerase III su 98.4 1.2E-05 2.5E-10 87.3 18.3 189 153-354 16-217 (363)
57 PRK14963 DNA polymerase III su 98.4 1.3E-05 2.7E-10 89.9 18.7 198 153-361 14-222 (504)
58 PLN03025 replication factor C 98.4 4.9E-06 1.1E-10 88.8 14.9 180 153-354 13-197 (319)
59 PRK08084 DNA replication initi 98.4 5E-06 1.1E-10 84.3 14.2 163 161-357 32-209 (235)
60 KOG2120 SCF ubiquitin ligase, 98.4 8.2E-09 1.8E-13 101.4 -5.9 182 559-784 186-375 (419)
61 cd01128 rho_factor Transcripti 98.4 4.6E-07 9.9E-12 91.6 6.3 92 172-268 14-114 (249)
62 PTZ00202 tuzin; Provisional 98.4 4.5E-05 9.7E-10 80.8 20.9 161 150-325 259-434 (550)
63 PRK14949 DNA polymerase III su 98.4 6.5E-06 1.4E-10 95.2 15.9 183 153-357 16-220 (944)
64 PF14580 LRR_9: Leucine-rich r 98.3 4.5E-07 9.7E-12 86.0 4.9 107 510-621 36-147 (175)
65 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.5E-13 100.4 -6.0 180 537-758 185-373 (419)
66 PRK00440 rfc replication facto 98.3 1.3E-05 2.8E-10 86.0 16.8 178 153-354 17-200 (319)
67 KOG1259 Nischarin, modulator o 98.3 9.8E-08 2.1E-12 93.9 0.3 188 550-758 206-409 (490)
68 PF13401 AAA_22: AAA domain; P 98.3 1.3E-06 2.8E-11 80.1 7.7 118 173-294 3-125 (131)
69 PF13191 AAA_16: AAA ATPase do 98.3 1.6E-06 3.5E-11 84.9 7.8 46 154-199 1-49 (185)
70 PRK12323 DNA polymerase III su 98.3 1.2E-05 2.6E-10 90.0 14.9 194 153-356 16-224 (700)
71 COG3903 Predicted ATPase [Gene 98.3 1.9E-06 4.1E-11 89.9 8.0 290 173-486 13-316 (414)
72 PRK09087 hypothetical protein; 98.3 1.6E-05 3.4E-10 79.8 14.4 141 173-356 43-194 (226)
73 PF05496 RuvB_N: Holliday junc 98.3 9.4E-06 2E-10 78.7 12.0 177 151-362 22-226 (233)
74 PRK13341 recombination factor 98.3 1E-05 2.2E-10 94.2 14.5 169 153-352 28-212 (725)
75 PRK14962 DNA polymerase III su 98.3 2.1E-05 4.6E-10 87.3 16.5 187 153-361 14-223 (472)
76 PRK06645 DNA polymerase III su 98.2 4.2E-05 9.2E-10 85.3 18.3 193 153-354 21-226 (507)
77 PRK14957 DNA polymerase III su 98.2 2.4E-05 5.2E-10 87.8 16.4 185 153-360 16-224 (546)
78 KOG0532 Leucine-rich repeat (L 98.2 1.2E-07 2.6E-12 101.3 -1.8 191 514-727 74-271 (722)
79 PRK07471 DNA polymerase III su 98.2 4.1E-05 8.8E-10 82.4 17.1 196 153-357 19-238 (365)
80 PRK09376 rho transcription ter 98.2 3.4E-06 7.4E-11 88.7 8.5 100 164-268 158-267 (416)
81 PRK14956 DNA polymerase III su 98.2 2.4E-05 5.2E-10 85.5 15.2 189 153-353 18-218 (484)
82 KOG1909 Ran GTPase-activating 98.2 1.5E-07 3.2E-12 95.1 -1.8 88 510-597 25-134 (382)
83 TIGR02397 dnaX_nterm DNA polym 98.2 7.1E-05 1.5E-09 81.7 18.8 182 153-357 14-218 (355)
84 PRK14951 DNA polymerase III su 98.2 3.6E-05 7.8E-10 87.6 16.7 197 153-356 16-224 (618)
85 KOG4341 F-box protein containi 98.2 5.3E-08 1.1E-12 100.4 -5.5 263 513-790 162-444 (483)
86 PF00308 Bac_DnaA: Bacterial d 98.2 3E-05 6.6E-10 77.5 14.1 162 173-357 33-208 (219)
87 PRK05896 DNA polymerase III su 98.2 4.3E-05 9.2E-10 85.9 15.9 194 153-359 16-223 (605)
88 PRK07994 DNA polymerase III su 98.2 3.1E-05 6.7E-10 88.3 14.9 193 153-357 16-220 (647)
89 PRK05642 DNA replication initi 98.2 2E-05 4.3E-10 79.8 12.1 151 174-358 45-209 (234)
90 PRK14958 DNA polymerase III su 98.1 0.00012 2.6E-09 82.4 19.4 182 153-356 16-219 (509)
91 PRK08691 DNA polymerase III su 98.1 3.6E-05 7.7E-10 87.4 14.8 178 153-356 16-219 (709)
92 PRK09112 DNA polymerase III su 98.1 7.8E-05 1.7E-09 79.7 16.8 197 152-357 22-240 (351)
93 PRK14087 dnaA chromosomal repl 98.1 9E-05 2E-09 82.3 17.8 167 174-359 141-321 (450)
94 TIGR01242 26Sp45 26S proteasom 98.1 6.7E-06 1.5E-10 89.5 8.8 170 153-351 122-328 (364)
95 PRK14964 DNA polymerase III su 98.1 7.6E-05 1.6E-09 82.6 16.9 180 153-354 13-214 (491)
96 PRK07940 DNA polymerase III su 98.1 6.8E-05 1.5E-09 81.4 16.0 184 153-356 5-212 (394)
97 PF05621 TniB: Bacterial TniB 98.1 0.00012 2.6E-09 74.6 16.7 193 162-356 46-260 (302)
98 PRK14955 DNA polymerase III su 98.1 2.6E-05 5.7E-10 85.6 12.8 196 153-354 16-225 (397)
99 PRK08903 DnaA regulatory inact 98.1 5.4E-05 1.2E-09 76.7 14.1 171 153-361 18-203 (227)
100 COG4886 Leucine-rich repeat (L 98.1 2.7E-06 5.9E-11 94.3 4.6 85 511-597 112-200 (394)
101 TIGR00678 holB DNA polymerase 98.1 0.00012 2.6E-09 71.7 15.5 161 164-353 3-187 (188)
102 COG4886 Leucine-rich repeat (L 98.1 4.8E-06 1E-10 92.3 6.2 190 519-729 97-290 (394)
103 TIGR00767 rho transcription te 98.1 1.5E-05 3.3E-10 84.5 9.4 92 172-268 166-266 (415)
104 PRK14959 DNA polymerase III su 98.0 0.00024 5.1E-09 80.5 19.2 197 153-362 16-226 (624)
105 PRK14970 DNA polymerase III su 98.0 0.00016 3.4E-09 79.2 17.6 180 153-354 17-206 (367)
106 PRK14969 DNA polymerase III su 98.0 0.00011 2.5E-09 83.2 16.8 183 153-357 16-221 (527)
107 PF13855 LRR_8: Leucine rich r 98.0 2.3E-06 5E-11 66.3 2.3 41 553-594 20-60 (61)
108 KOG1259 Nischarin, modulator o 98.0 1.5E-06 3.2E-11 85.7 1.3 131 554-704 280-410 (490)
109 COG2255 RuvB Holliday junction 98.0 0.00066 1.4E-08 67.5 19.0 174 153-361 26-227 (332)
110 KOG0532 Leucine-rich repeat (L 98.0 5E-07 1.1E-11 96.7 -3.3 152 510-679 93-248 (722)
111 PRK09111 DNA polymerase III su 98.0 0.00016 3.4E-09 82.7 16.4 195 153-357 24-233 (598)
112 TIGR00362 DnaA chromosomal rep 98.0 0.0003 6.5E-09 77.9 18.2 159 174-355 136-308 (405)
113 PF14516 AAA_35: AAA-like doma 98.0 0.002 4.3E-08 68.9 23.6 199 154-364 12-246 (331)
114 PRK00149 dnaA chromosomal repl 98.0 0.00026 5.6E-09 79.5 17.5 158 174-354 148-319 (450)
115 TIGR02881 spore_V_K stage V sp 98.0 0.00011 2.5E-09 75.9 13.5 154 153-328 6-194 (261)
116 TIGR02880 cbbX_cfxQ probable R 97.9 0.00022 4.7E-09 74.4 15.5 133 176-328 60-211 (284)
117 PRK07764 DNA polymerase III su 97.9 0.00019 4.1E-09 84.9 16.6 189 153-354 15-218 (824)
118 PRK14954 DNA polymerase III su 97.9 0.00036 7.7E-09 79.9 18.2 200 153-357 16-229 (620)
119 CHL00181 cbbX CbbX; Provisiona 97.9 0.00034 7.3E-09 72.9 16.6 134 175-328 60-212 (287)
120 PRK14952 DNA polymerase III su 97.9 0.0003 6.5E-09 79.9 17.3 197 153-362 13-225 (584)
121 PRK14950 DNA polymerase III su 97.9 0.00036 7.7E-09 80.6 17.9 192 153-356 16-220 (585)
122 PRK11331 5-methylcytosine-spec 97.9 9.1E-05 2E-09 80.0 11.8 69 153-225 175-243 (459)
123 PRK07133 DNA polymerase III su 97.9 0.00042 9E-09 79.8 16.9 188 153-358 18-221 (725)
124 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00028 6.1E-09 84.5 16.3 182 152-351 186-390 (852)
125 PRK14088 dnaA chromosomal repl 97.8 0.00021 4.6E-09 79.3 14.0 158 174-354 130-302 (440)
126 PRK08451 DNA polymerase III su 97.8 0.00068 1.5E-08 75.9 17.7 179 153-357 14-218 (535)
127 KOG0989 Replication factor C, 97.8 0.00021 4.6E-09 71.7 12.1 186 153-356 36-230 (346)
128 PRK14971 DNA polymerase III su 97.8 0.00063 1.4E-08 78.4 17.9 179 153-354 17-219 (614)
129 PRK06305 DNA polymerase III su 97.8 0.00061 1.3E-08 75.8 17.3 183 153-358 17-224 (451)
130 PHA02544 44 clamp loader, smal 97.8 0.0002 4.2E-09 76.7 13.0 145 153-323 21-171 (316)
131 TIGR02639 ClpA ATP-dependent C 97.8 0.00024 5.3E-09 84.4 14.9 156 153-326 182-359 (731)
132 KOG2982 Uncharacterized conser 97.8 6.7E-06 1.4E-10 81.3 1.4 96 519-624 49-156 (418)
133 PRK14948 DNA polymerase III su 97.8 0.00076 1.7E-08 77.7 18.1 194 153-356 16-221 (620)
134 PRK03992 proteasome-activating 97.8 0.0001 2.2E-09 80.7 10.4 170 153-351 131-337 (389)
135 KOG2227 Pre-initiation complex 97.8 0.0021 4.6E-08 68.3 19.4 199 152-356 149-367 (529)
136 PRK06620 hypothetical protein; 97.8 0.00015 3.2E-09 72.1 10.6 134 175-354 45-186 (214)
137 PRK14953 DNA polymerase III su 97.8 0.00094 2E-08 74.8 18.0 178 153-357 16-220 (486)
138 PRK12422 chromosomal replicati 97.8 0.00047 1E-08 76.3 14.9 152 174-350 141-306 (445)
139 PF13855 LRR_8: Leucine rich r 97.8 1.8E-05 3.8E-10 61.3 2.7 59 558-624 1-59 (61)
140 PRK14086 dnaA chromosomal repl 97.7 0.00052 1.1E-08 77.4 14.7 158 174-354 314-485 (617)
141 COG0466 Lon ATP-dependent Lon 97.7 0.0068 1.5E-07 68.1 22.9 157 153-325 323-508 (782)
142 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.5E-10 93.4 1.4 102 515-625 122-231 (699)
143 PTZ00361 26 proteosome regulat 97.7 0.00028 6.1E-09 77.3 12.0 170 154-351 184-389 (438)
144 KOG0531 Protein phosphatase 1, 97.7 9.4E-06 2E-10 90.2 0.1 83 511-597 91-176 (414)
145 PRK06647 DNA polymerase III su 97.7 0.0017 3.8E-08 73.9 18.1 191 153-356 16-219 (563)
146 KOG2982 Uncharacterized conser 97.7 1.9E-05 4.1E-10 78.2 1.9 196 514-722 70-285 (418)
147 PTZ00454 26S protease regulato 97.7 0.0002 4.4E-09 77.9 9.9 172 153-352 145-352 (398)
148 COG0593 DnaA ATPase involved i 97.6 0.0015 3.3E-08 70.0 16.1 258 173-486 112-392 (408)
149 PRK07399 DNA polymerase III su 97.6 0.0016 3.4E-08 68.8 15.9 197 153-356 4-220 (314)
150 PRK14965 DNA polymerase III su 97.6 0.0027 5.9E-08 73.0 19.2 195 153-360 16-224 (576)
151 TIGR00763 lon ATP-dependent pr 97.6 0.005 1.1E-07 73.8 21.6 47 153-199 320-372 (775)
152 CHL00095 clpC Clp protease ATP 97.6 0.00035 7.5E-09 84.2 11.9 157 153-325 179-354 (821)
153 PF05673 DUF815: Protein of un 97.6 0.003 6.6E-08 62.4 16.0 51 149-199 23-77 (249)
154 PF12799 LRR_4: Leucine Rich r 97.6 8.4E-05 1.8E-09 52.7 3.5 38 558-597 1-38 (44)
155 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.8E-08 72.0 14.3 164 158-356 22-191 (398)
156 TIGR01241 FtsH_fam ATP-depende 97.5 0.0012 2.6E-08 75.0 14.5 171 153-351 55-260 (495)
157 PRK05563 DNA polymerase III su 97.5 0.0041 9E-08 71.2 18.7 189 153-354 16-217 (559)
158 KOG0531 Protein phosphatase 1, 97.5 3.2E-05 6.9E-10 86.0 1.3 123 515-651 72-197 (414)
159 KOG2543 Origin recognition com 97.5 0.00063 1.4E-08 70.3 10.2 163 153-324 6-192 (438)
160 PRK10865 protein disaggregatio 97.5 0.00091 2E-08 80.5 13.4 47 153-199 178-224 (857)
161 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0021 4.5E-08 70.4 14.4 168 154-349 191-394 (802)
162 PLN03150 hypothetical protein; 97.5 0.00026 5.6E-09 82.6 8.3 79 517-596 420-503 (623)
163 TIGR00602 rad24 checkpoint pro 97.5 0.00069 1.5E-08 77.5 11.3 47 153-199 84-135 (637)
164 PRK15386 type III secretion pr 97.4 0.00023 5E-09 76.1 6.7 70 640-725 52-121 (426)
165 PRK15386 type III secretion pr 97.4 0.00057 1.2E-08 73.2 9.6 62 511-576 48-112 (426)
166 PRK10787 DNA-binding ATP-depen 97.4 0.0033 7.2E-08 74.6 16.8 157 153-325 322-506 (784)
167 PF12799 LRR_4: Leucine Rich r 97.4 0.00012 2.6E-09 51.9 3.0 39 537-576 1-41 (44)
168 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00091 2E-08 80.8 12.4 157 153-326 173-350 (852)
169 PRK10536 hypothetical protein; 97.4 0.0026 5.6E-08 63.8 13.2 56 152-211 54-109 (262)
170 KOG1859 Leucine-rich repeat pr 97.4 7.4E-06 1.6E-10 90.3 -5.0 126 513-651 162-290 (1096)
171 TIGR03689 pup_AAA proteasome A 97.4 0.0011 2.4E-08 73.8 11.5 161 154-326 183-379 (512)
172 KOG2004 Mitochondrial ATP-depe 97.4 0.0069 1.5E-07 67.7 17.2 97 153-268 411-516 (906)
173 PRK11034 clpA ATP-dependent Cl 97.4 0.0008 1.7E-08 79.1 10.9 157 153-325 186-362 (758)
174 CHL00176 ftsH cell division pr 97.4 0.0028 6.2E-08 73.1 15.1 170 153-350 183-387 (638)
175 smart00382 AAA ATPases associa 97.4 0.00058 1.3E-08 63.1 8.0 89 174-270 2-91 (148)
176 PRK08118 topology modulation p 97.4 0.00011 2.4E-09 70.1 2.8 35 175-211 2-37 (167)
177 PRK05707 DNA polymerase III su 97.3 0.0066 1.4E-07 64.5 16.2 167 173-357 21-203 (328)
178 COG3267 ExeA Type II secretory 97.3 0.013 2.9E-07 57.7 16.8 184 171-360 48-248 (269)
179 PRK08116 hypothetical protein; 97.3 0.00041 8.9E-09 71.6 6.5 101 175-294 115-220 (268)
180 KOG0741 AAA+-type ATPase [Post 97.3 0.0033 7.2E-08 67.6 12.9 160 173-361 537-716 (744)
181 KOG1909 Ran GTPase-activating 97.2 4.8E-05 1E-09 77.4 -1.1 193 534-758 89-308 (382)
182 KOG1859 Leucine-rich repeat pr 97.2 2.4E-05 5.1E-10 86.5 -3.6 152 510-676 104-290 (1096)
183 COG1222 RPT1 ATP-dependent 26S 97.2 0.013 2.9E-07 60.5 15.7 193 156-377 154-392 (406)
184 PRK12608 transcription termina 97.2 0.0029 6.4E-08 67.0 10.9 102 161-267 119-230 (380)
185 PRK08769 DNA polymerase III su 97.1 0.016 3.5E-07 61.0 16.4 179 160-357 11-208 (319)
186 PF04665 Pox_A32: Poxvirus A32 97.1 0.0009 1.9E-08 66.7 6.6 36 175-214 14-49 (241)
187 PRK07261 topology modulation p 97.1 0.0012 2.6E-08 63.3 7.3 66 176-267 2-67 (171)
188 PRK08181 transposase; Validate 97.1 0.00083 1.8E-08 68.9 6.5 101 173-295 105-209 (269)
189 PF00004 AAA: ATPase family as 97.1 0.00099 2.1E-08 60.8 6.2 23 177-199 1-23 (132)
190 COG5238 RNA1 Ran GTPase-activa 97.1 0.00011 2.4E-09 72.0 -0.6 194 510-703 25-252 (388)
191 PF00448 SRP54: SRP54-type pro 97.0 0.0028 6E-08 62.0 8.9 89 174-266 1-92 (196)
192 PRK08058 DNA polymerase III su 97.0 0.014 3.1E-07 62.3 14.6 159 154-323 6-180 (329)
193 PRK10865 protein disaggregatio 97.0 0.11 2.3E-06 63.0 23.2 46 153-198 568-622 (857)
194 KOG0730 AAA+-type ATPase [Post 96.9 0.012 2.5E-07 65.6 13.5 161 156-340 437-630 (693)
195 KOG3665 ZYG-1-like serine/thre 96.9 0.00042 9.2E-09 80.6 2.6 134 535-679 120-264 (699)
196 PRK06526 transposase; Provisio 96.9 0.0011 2.4E-08 67.6 5.2 74 173-268 97-170 (254)
197 PRK12377 putative replication 96.9 0.0057 1.2E-07 62.0 9.9 75 173-268 100-174 (248)
198 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0097 2.1E-07 66.5 12.4 172 154-351 229-429 (489)
199 PF13177 DNA_pol3_delta2: DNA 96.9 0.0086 1.9E-07 56.7 10.4 138 157-313 1-162 (162)
200 PF10443 RNA12: RNA12 protein; 96.9 0.024 5.3E-07 60.7 14.6 199 158-368 1-289 (431)
201 KOG2035 Replication factor C, 96.8 0.026 5.7E-07 56.1 13.5 210 153-379 13-260 (351)
202 PLN03150 hypothetical protein; 96.8 0.0016 3.4E-08 76.1 6.0 109 667-787 420-530 (623)
203 KOG2739 Leucine-rich acidic nu 96.8 0.00068 1.5E-08 66.8 2.5 81 514-597 42-130 (260)
204 KOG2228 Origin recognition com 96.8 0.013 2.8E-07 59.9 11.3 170 153-326 24-220 (408)
205 PRK09183 transposase/IS protei 96.8 0.0027 5.9E-08 65.2 6.8 27 173-199 101-127 (259)
206 PRK08939 primosomal protein Dn 96.7 0.0055 1.2E-07 64.4 8.8 115 157-293 135-259 (306)
207 PF13207 AAA_17: AAA domain; P 96.7 0.0013 2.8E-08 59.1 3.6 23 176-198 1-23 (121)
208 PF07693 KAP_NTPase: KAP famil 96.7 0.035 7.7E-07 59.6 15.4 73 159-231 2-80 (325)
209 KOG0991 Replication factor C, 96.7 0.006 1.3E-07 58.7 7.9 47 153-199 27-73 (333)
210 COG0542 clpA ATP-binding subun 96.7 0.049 1.1E-06 63.2 16.6 104 153-268 491-604 (786)
211 PRK06835 DNA replication prote 96.7 0.041 9E-07 58.3 15.0 37 174-214 183-219 (329)
212 PRK09361 radB DNA repair and r 96.7 0.0086 1.9E-07 60.5 9.6 89 173-267 22-117 (225)
213 PRK06871 DNA polymerase III su 96.7 0.079 1.7E-06 56.0 16.9 176 160-354 9-200 (325)
214 TIGR02639 ClpA ATP-dependent C 96.7 0.0075 1.6E-07 71.9 10.5 102 153-269 454-565 (731)
215 TIGR01243 CDC48 AAA family ATP 96.7 0.01 2.2E-07 71.0 11.4 172 154-353 179-383 (733)
216 KOG4579 Leucine-rich repeat (L 96.6 0.00046 9.9E-09 60.8 -0.0 81 515-597 53-137 (177)
217 PRK12727 flagellar biosynthesi 96.6 0.071 1.5E-06 59.2 16.7 89 173-267 349-438 (559)
218 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.011 2.5E-07 60.1 10.1 92 173-267 18-125 (235)
219 KOG0731 AAA+-type ATPase conta 96.6 0.03 6.5E-07 64.4 14.1 174 153-354 311-521 (774)
220 PRK00771 signal recognition pa 96.6 0.13 2.7E-06 56.8 18.6 90 173-267 94-185 (437)
221 smart00763 AAA_PrkA PrkA AAA d 96.6 0.003 6.5E-08 66.7 5.8 58 154-211 52-118 (361)
222 PF01695 IstB_IS21: IstB-like 96.6 0.0022 4.7E-08 61.8 4.4 75 173-269 46-120 (178)
223 KOG1514 Origin recognition com 96.6 0.073 1.6E-06 59.9 16.5 202 153-360 396-624 (767)
224 TIGR02640 gas_vesic_GvpN gas v 96.6 0.037 8E-07 57.2 13.7 55 161-224 10-64 (262)
225 PRK06090 DNA polymerase III su 96.6 0.094 2E-06 55.3 16.6 175 160-357 10-201 (319)
226 cd00983 recA RecA is a bacter 96.6 0.0064 1.4E-07 63.8 7.8 86 173-267 54-143 (325)
227 TIGR02012 tigrfam_recA protein 96.6 0.0066 1.4E-07 63.6 7.9 87 173-268 54-144 (321)
228 COG1223 Predicted ATPase (AAA+ 96.5 0.038 8.2E-07 54.4 12.2 170 153-351 121-319 (368)
229 TIGR02902 spore_lonB ATP-depen 96.5 0.025 5.5E-07 64.5 13.1 46 153-198 65-110 (531)
230 KOG0743 AAA+-type ATPase [Post 96.5 0.42 9.1E-06 51.5 20.8 151 174-362 235-414 (457)
231 COG2812 DnaX DNA polymerase II 96.5 0.014 2.9E-07 64.9 10.3 187 153-352 16-215 (515)
232 TIGR01243 CDC48 AAA family ATP 96.5 0.024 5.1E-07 67.9 13.3 171 153-351 453-657 (733)
233 PRK06921 hypothetical protein; 96.5 0.007 1.5E-07 62.4 7.6 39 173-214 116-154 (266)
234 cd01393 recA_like RecA is a b 96.5 0.024 5.2E-07 57.3 11.5 90 173-267 18-124 (226)
235 PF08423 Rad51: Rad51; InterP 96.5 0.013 2.8E-07 60.0 9.4 92 173-267 37-143 (256)
236 KOG1947 Leucine rich repeat pr 96.5 0.00066 1.4E-08 77.5 -0.1 41 748-788 401-443 (482)
237 COG2884 FtsE Predicted ATPase 96.5 0.016 3.4E-07 54.5 8.8 124 173-301 27-203 (223)
238 TIGR02237 recomb_radB DNA repa 96.5 0.01 2.2E-07 59.2 8.4 89 173-267 11-107 (209)
239 PF02562 PhoH: PhoH-like prote 96.5 0.0055 1.2E-07 59.7 6.1 50 160-213 7-56 (205)
240 PRK04296 thymidine kinase; Pro 96.5 0.0033 7.2E-08 61.4 4.7 113 175-296 3-117 (190)
241 PRK09354 recA recombinase A; P 96.5 0.0089 1.9E-07 63.2 8.0 86 173-267 59-148 (349)
242 PRK06964 DNA polymerase III su 96.4 0.13 2.8E-06 54.8 16.7 91 256-357 131-225 (342)
243 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0086 1.9E-07 72.0 8.7 47 153-199 566-621 (852)
244 cd01394 radB RadB. The archaea 96.4 0.026 5.5E-07 56.7 10.9 43 173-219 18-60 (218)
245 KOG0734 AAA+-type ATPase conta 96.4 0.032 6.9E-07 60.5 11.5 46 154-199 305-362 (752)
246 PRK05541 adenylylsulfate kinas 96.4 0.0076 1.6E-07 58.2 6.6 36 173-212 6-41 (176)
247 PRK07952 DNA replication prote 96.4 0.025 5.4E-07 57.2 10.4 89 161-269 84-174 (244)
248 KOG1969 DNA replication checkp 96.4 0.0083 1.8E-07 67.3 7.4 73 173-269 325-399 (877)
249 TIGR03346 chaperone_ClpB ATP-d 96.3 0.015 3.2E-07 70.5 10.1 60 153-216 565-633 (852)
250 TIGR02238 recomb_DMC1 meiotic 96.3 0.024 5.2E-07 59.8 10.3 92 173-267 95-201 (313)
251 PLN03187 meiotic recombination 96.3 0.024 5.3E-07 60.2 10.0 94 173-267 125-231 (344)
252 cd01133 F1-ATPase_beta F1 ATP 96.2 0.016 3.6E-07 59.0 8.3 91 173-267 68-173 (274)
253 KOG0736 Peroxisome assembly fa 96.2 0.29 6.3E-06 55.8 18.5 92 153-268 672-775 (953)
254 PRK06696 uridine kinase; Valid 96.2 0.007 1.5E-07 60.9 5.7 43 157-199 2-47 (223)
255 KOG1644 U2-associated snRNP A' 96.2 0.0061 1.3E-07 57.7 4.7 106 641-758 43-150 (233)
256 PLN00020 ribulose bisphosphate 96.2 0.0065 1.4E-07 63.7 5.4 28 172-199 146-173 (413)
257 TIGR01425 SRP54_euk signal rec 96.2 0.34 7.4E-06 53.0 18.7 27 173-199 99-125 (429)
258 COG1484 DnaC DNA replication p 96.2 0.028 6.1E-07 57.4 10.0 75 173-268 104-178 (254)
259 cd01120 RecA-like_NTPases RecA 96.2 0.034 7.3E-07 52.7 9.9 40 176-219 1-40 (165)
260 TIGR03499 FlhF flagellar biosy 96.2 0.027 5.8E-07 58.8 9.8 88 173-266 193-281 (282)
261 KOG0735 AAA+-type ATPase [Post 96.2 0.013 2.8E-07 65.6 7.4 71 173-267 430-504 (952)
262 TIGR02239 recomb_RAD51 DNA rep 96.1 0.03 6.5E-07 59.2 10.1 60 173-233 95-156 (316)
263 KOG1947 Leucine rich repeat pr 96.1 0.00058 1.3E-08 78.0 -3.2 59 536-594 187-254 (482)
264 CHL00095 clpC Clp protease ATP 96.1 0.018 3.8E-07 69.7 9.2 104 153-268 509-622 (821)
265 PRK07993 DNA polymerase III su 96.1 0.19 4.1E-06 53.7 15.8 176 160-354 9-201 (334)
266 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.038 8.3E-07 56.2 10.2 49 173-227 20-68 (237)
267 PRK15455 PrkA family serine pr 96.1 0.0072 1.6E-07 67.1 5.1 47 153-199 76-128 (644)
268 PRK11889 flhF flagellar biosyn 96.1 0.029 6.2E-07 59.8 9.3 88 173-267 240-330 (436)
269 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.055 1.2E-06 50.5 10.2 117 175-296 3-139 (159)
270 PRK04132 replication factor C 96.0 0.15 3.3E-06 60.5 16.0 151 182-355 574-729 (846)
271 KOG0744 AAA+-type ATPase [Post 96.0 0.021 4.5E-07 58.0 7.5 83 174-268 177-261 (423)
272 PF03215 Rad17: Rad17 cell cyc 96.0 0.026 5.6E-07 63.6 9.3 53 155-213 21-78 (519)
273 COG2607 Predicted ATPase (AAA+ 96.0 0.031 6.8E-07 54.5 8.4 47 153-199 60-110 (287)
274 COG4608 AppF ABC-type oligopep 96.0 0.029 6.2E-07 56.4 8.5 126 173-303 38-178 (268)
275 cd03115 SRP The signal recogni 96.0 0.029 6.2E-07 54.0 8.5 24 176-199 2-25 (173)
276 COG0470 HolB ATPase involved i 96.0 0.044 9.5E-07 58.9 10.8 141 155-313 3-169 (325)
277 cd01131 PilT Pilus retraction 96.0 0.0086 1.9E-07 59.0 4.7 110 175-298 2-112 (198)
278 PRK04301 radA DNA repair and r 96.0 0.05 1.1E-06 58.0 10.9 58 173-233 101-162 (317)
279 PRK06547 hypothetical protein; 95.9 0.011 2.4E-07 56.4 5.1 36 164-199 5-40 (172)
280 TIGR00959 ffh signal recogniti 95.9 0.039 8.4E-07 60.6 9.8 92 173-267 98-192 (428)
281 cd03238 ABC_UvrA The excision 95.9 0.033 7.2E-07 53.4 8.3 124 173-309 20-161 (176)
282 PRK10867 signal recognition pa 95.9 0.037 8.1E-07 60.7 9.6 27 173-199 99-125 (433)
283 PRK10733 hflB ATP-dependent me 95.9 0.051 1.1E-06 63.6 11.4 149 174-350 185-356 (644)
284 PRK11034 clpA ATP-dependent Cl 95.9 0.011 2.4E-07 69.7 5.8 46 153-198 458-512 (758)
285 COG0572 Udk Uridine kinase [Nu 95.8 0.026 5.7E-07 55.0 7.3 79 173-258 7-85 (218)
286 COG1875 NYN ribonuclease and A 95.8 0.019 4.1E-07 59.4 6.5 39 157-195 228-266 (436)
287 PRK14722 flhF flagellar biosyn 95.8 0.04 8.6E-07 59.1 9.3 89 173-267 136-225 (374)
288 PF00485 PRK: Phosphoribulokin 95.8 0.052 1.1E-06 53.3 9.6 82 176-261 1-87 (194)
289 PTZ00494 tuzin-like protein; P 95.8 3.6 7.7E-05 44.6 24.0 162 153-325 371-544 (664)
290 COG0541 Ffh Signal recognition 95.8 1.2 2.5E-05 48.0 19.7 59 173-236 99-159 (451)
291 KOG0733 Nuclear AAA ATPase (VC 95.8 0.16 3.5E-06 56.3 13.5 153 173-351 544-718 (802)
292 COG1419 FlhF Flagellar GTP-bin 95.7 0.086 1.9E-06 56.2 11.0 87 173-266 202-290 (407)
293 PF00154 RecA: recA bacterial 95.7 0.061 1.3E-06 56.3 9.8 88 173-269 52-143 (322)
294 cd01121 Sms Sms (bacterial rad 95.7 0.057 1.2E-06 58.4 9.8 85 173-267 81-168 (372)
295 COG1618 Predicted nucleotide k 95.7 0.015 3.3E-07 53.0 4.5 26 174-199 5-30 (179)
296 PRK06067 flagellar accessory p 95.6 0.091 2E-06 53.4 10.8 88 173-267 24-130 (234)
297 KOG1644 U2-associated snRNP A' 95.6 0.02 4.3E-07 54.4 5.2 36 559-597 43-78 (233)
298 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.028 6.1E-07 54.6 6.8 24 176-199 1-24 (183)
299 COG1102 Cmk Cytidylate kinase 95.6 0.022 4.9E-07 52.0 5.4 44 176-234 2-45 (179)
300 PHA00729 NTP-binding motif con 95.6 0.017 3.6E-07 57.1 4.9 35 164-198 7-41 (226)
301 cd03214 ABC_Iron-Siderophores_ 95.6 0.042 9.1E-07 53.2 7.7 120 173-298 24-161 (180)
302 KOG4579 Leucine-rich repeat (L 95.6 0.0011 2.4E-08 58.4 -2.9 65 554-627 49-113 (177)
303 PTZ00035 Rad51 protein; Provis 95.6 0.1 2.2E-06 55.8 11.1 92 173-267 117-223 (337)
304 PLN03186 DNA repair protein RA 95.5 0.11 2.3E-06 55.5 11.2 94 173-267 122-228 (342)
305 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.4E-07 53.5 3.3 22 177-198 1-22 (129)
306 PRK04328 hypothetical protein; 95.5 0.057 1.2E-06 55.3 8.8 41 173-217 22-62 (249)
307 TIGR00064 ftsY signal recognit 95.4 0.099 2.1E-06 54.1 10.1 91 172-267 70-164 (272)
308 PRK08699 DNA polymerase III su 95.4 0.35 7.5E-06 51.5 14.4 27 173-199 20-46 (325)
309 PRK07667 uridine kinase; Provi 95.4 0.021 4.5E-07 56.0 4.9 38 162-199 3-42 (193)
310 cd03223 ABCD_peroxisomal_ALDP 95.4 0.085 1.8E-06 50.3 9.0 116 173-298 26-151 (166)
311 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3E-07 46.2 2.9 23 176-198 1-23 (69)
312 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.052 1.1E-06 50.3 7.2 26 173-198 25-50 (144)
313 COG0563 Adk Adenylate kinase a 95.4 0.021 4.6E-07 54.8 4.7 24 176-199 2-25 (178)
314 PRK05480 uridine/cytidine kina 95.4 0.016 3.5E-07 57.7 4.1 27 172-198 4-30 (209)
315 KOG0728 26S proteasome regulat 95.4 0.35 7.7E-06 47.3 12.8 146 173-343 180-349 (404)
316 TIGR00554 panK_bact pantothena 95.3 0.13 2.7E-06 53.5 10.6 27 172-198 60-86 (290)
317 PRK12724 flagellar biosynthesi 95.3 0.07 1.5E-06 57.7 8.9 25 174-198 223-247 (432)
318 PF07728 AAA_5: AAA domain (dy 95.3 0.04 8.7E-07 50.8 6.4 43 177-226 2-44 (139)
319 PRK14974 cell division protein 95.3 0.13 2.9E-06 54.5 11.0 91 173-268 139-233 (336)
320 COG1136 SalX ABC-type antimicr 95.3 0.024 5.2E-07 55.9 5.0 124 173-301 30-209 (226)
321 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.06 1.3E-06 54.1 7.8 125 173-299 29-203 (254)
322 PTZ00301 uridine kinase; Provi 95.3 0.016 3.6E-07 57.2 3.8 26 174-199 3-28 (210)
323 cd03247 ABCC_cytochrome_bd The 95.3 0.063 1.4E-06 51.9 7.9 27 173-199 27-53 (178)
324 PRK08233 hypothetical protein; 95.3 0.016 3.4E-07 56.3 3.7 26 174-199 3-28 (182)
325 PF03205 MobB: Molybdopterin g 95.3 0.029 6.2E-07 51.6 5.1 39 175-216 1-39 (140)
326 PRK09270 nucleoside triphospha 95.3 0.024 5.2E-07 57.3 5.1 28 172-199 31-58 (229)
327 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.14 3.1E-06 51.7 10.9 40 173-216 19-58 (229)
328 PF13671 AAA_33: AAA domain; P 95.3 0.016 3.6E-07 53.6 3.6 23 176-198 1-23 (143)
329 TIGR02858 spore_III_AA stage I 95.2 0.12 2.7E-06 53.1 10.1 128 162-298 98-232 (270)
330 cd02025 PanK Pantothenate kina 95.2 0.1 2.2E-06 52.2 9.2 24 176-199 1-24 (220)
331 COG0465 HflB ATP-dependent Zn 95.2 0.18 3.8E-06 57.1 11.8 173 153-353 150-357 (596)
332 TIGR02236 recomb_radA DNA repa 95.2 0.11 2.4E-06 55.2 10.1 58 173-233 94-155 (310)
333 PF00006 ATP-synt_ab: ATP synt 95.2 0.093 2E-06 51.9 8.6 94 165-266 5-114 (215)
334 PF06309 Torsin: Torsin; Inte 95.1 0.083 1.8E-06 46.7 7.3 45 154-198 26-77 (127)
335 TIGR00235 udk uridine kinase. 95.1 0.018 4E-07 57.2 3.7 27 173-199 5-31 (207)
336 PRK12726 flagellar biosynthesi 95.1 0.14 3E-06 54.6 10.2 89 173-267 205-295 (407)
337 PRK12723 flagellar biosynthesi 95.1 0.11 2.3E-06 56.4 9.6 90 173-267 173-264 (388)
338 PF01583 APS_kinase: Adenylyls 95.1 0.032 7E-07 51.8 4.9 36 174-213 2-37 (156)
339 COG1066 Sms Predicted ATP-depe 95.1 0.15 3.2E-06 54.1 10.2 96 162-268 79-179 (456)
340 PRK09519 recA DNA recombinatio 95.1 0.073 1.6E-06 62.3 8.8 86 173-267 59-148 (790)
341 TIGR01069 mutS2 MutS2 family p 95.1 0.18 3.9E-06 60.1 12.3 180 173-379 321-522 (771)
342 PRK06762 hypothetical protein; 95.1 0.02 4.4E-07 54.6 3.7 25 174-198 2-26 (166)
343 KOG1532 GTPase XAB1, interacts 95.1 0.073 1.6E-06 52.8 7.4 63 173-235 18-87 (366)
344 cd02027 APSK Adenosine 5'-phos 95.1 0.11 2.4E-06 48.5 8.5 24 176-199 1-24 (149)
345 KOG0738 AAA+-type ATPase [Post 95.0 0.36 7.7E-06 50.7 12.5 27 173-199 244-270 (491)
346 COG0468 RecA RecA/RadA recombi 95.0 0.11 2.3E-06 53.4 8.9 90 173-268 59-152 (279)
347 PF00910 RNA_helicase: RNA hel 95.0 0.024 5.1E-07 49.5 3.6 23 177-199 1-23 (107)
348 PRK13765 ATP-dependent proteas 95.0 0.041 8.8E-07 63.5 6.4 74 153-232 31-104 (637)
349 COG0488 Uup ATPase components 95.0 0.38 8.3E-06 54.4 13.9 135 173-310 347-510 (530)
350 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.9E-07 55.6 3.7 26 173-198 2-27 (188)
351 cd03222 ABC_RNaseL_inhibitor T 94.9 0.074 1.6E-06 51.1 7.1 27 172-198 23-49 (177)
352 cd03216 ABC_Carb_Monos_I This 94.9 0.034 7.3E-07 52.8 4.8 115 173-298 25-145 (163)
353 TIGR00390 hslU ATP-dependent p 94.9 0.065 1.4E-06 57.7 7.3 75 153-231 12-104 (441)
354 TIGR03575 selen_PSTK_euk L-ser 94.9 0.1 2.2E-06 55.3 8.7 23 177-199 2-24 (340)
355 KOG2739 Leucine-rich acidic nu 94.9 0.011 2.3E-07 58.6 1.3 85 534-625 40-127 (260)
356 cd03228 ABCC_MRP_Like The MRP 94.9 0.069 1.5E-06 51.2 6.9 27 173-199 27-53 (171)
357 PF10236 DAP3: Mitochondrial r 94.9 0.7 1.5E-05 48.9 14.9 49 306-354 258-306 (309)
358 PRK03839 putative kinase; Prov 94.9 0.023 4.9E-07 55.1 3.5 24 176-199 2-25 (180)
359 COG0464 SpoVK ATPases of the A 94.9 0.23 5.1E-06 56.7 12.2 132 173-328 275-426 (494)
360 cd03246 ABCC_Protease_Secretio 94.9 0.059 1.3E-06 51.8 6.3 26 173-198 27-52 (173)
361 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.21 4.6E-06 51.4 10.7 40 173-216 35-74 (259)
362 PRK00889 adenylylsulfate kinas 94.8 0.088 1.9E-06 50.7 7.4 27 173-199 3-29 (175)
363 PF08433 KTI12: Chromatin asso 94.8 0.088 1.9E-06 54.2 7.7 25 175-199 2-26 (270)
364 KOG2170 ATPase of the AAA+ sup 94.8 0.063 1.4E-06 54.3 6.3 46 154-199 83-135 (344)
365 PRK13531 regulatory ATPase Rav 94.8 0.046 1E-06 60.1 5.9 45 153-199 20-64 (498)
366 KOG2123 Uncharacterized conser 94.8 0.0033 7.1E-08 62.2 -2.6 78 536-622 18-96 (388)
367 PRK08972 fliI flagellum-specif 94.8 0.055 1.2E-06 58.9 6.3 90 173-268 161-263 (444)
368 cd01124 KaiC KaiC is a circadi 94.8 0.1 2.2E-06 50.8 7.9 45 176-226 1-45 (187)
369 TIGR02030 BchI-ChlI magnesium 94.8 0.046 1E-06 58.2 5.6 48 151-198 2-49 (337)
370 TIGR00150 HI0065_YjeE ATPase, 94.8 0.05 1.1E-06 49.1 5.0 39 161-199 7-47 (133)
371 PRK10463 hydrogenase nickel in 94.8 0.12 2.7E-06 53.1 8.5 32 168-199 98-129 (290)
372 TIGR01650 PD_CobS cobaltochela 94.7 1.5 3.2E-05 46.1 16.4 61 155-224 47-107 (327)
373 PRK05703 flhF flagellar biosyn 94.7 0.14 3E-06 56.6 9.4 87 174-266 221-308 (424)
374 PRK00409 recombination and DNA 94.7 0.97 2.1E-05 54.1 17.1 181 172-379 325-527 (782)
375 COG1428 Deoxynucleoside kinase 94.6 0.027 5.9E-07 54.1 3.2 26 174-199 4-29 (216)
376 PRK15453 phosphoribulokinase; 94.6 0.27 5.8E-06 50.3 10.3 81 172-256 3-89 (290)
377 cd02028 UMPK_like Uridine mono 94.6 0.079 1.7E-06 51.1 6.4 24 176-199 1-24 (179)
378 COG4088 Predicted nucleotide k 94.6 0.023 5E-07 53.9 2.6 25 175-199 2-26 (261)
379 PRK05973 replicative DNA helic 94.6 0.31 6.6E-06 49.0 10.7 49 173-227 63-111 (237)
380 TIGR00764 lon_rel lon-related 94.6 0.082 1.8E-06 61.2 7.6 75 153-233 18-92 (608)
381 PRK04040 adenylate kinase; Pro 94.6 0.032 7E-07 54.2 3.7 25 174-198 2-26 (188)
382 TIGR00708 cobA cob(I)alamin ad 94.6 0.23 5.1E-06 46.9 9.2 116 174-295 5-140 (173)
383 PRK11823 DNA repair protein Ra 94.6 0.12 2.6E-06 57.6 8.6 85 173-267 79-166 (446)
384 PRK06002 fliI flagellum-specif 94.5 0.098 2.1E-06 57.3 7.5 91 173-268 164-265 (450)
385 PRK00625 shikimate kinase; Pro 94.5 0.03 6.5E-07 53.5 3.3 24 176-199 2-25 (173)
386 PF12775 AAA_7: P-loop contain 94.5 0.027 5.9E-07 58.2 3.2 57 163-224 23-79 (272)
387 PTZ00088 adenylate kinase 1; P 94.5 0.033 7.1E-07 55.9 3.6 23 177-199 9-31 (229)
388 cd03230 ABC_DR_subfamily_A Thi 94.5 0.074 1.6E-06 51.1 6.0 26 173-198 25-50 (173)
389 KOG3347 Predicted nucleotide k 94.5 0.062 1.3E-06 48.3 4.8 71 173-257 6-76 (176)
390 PRK10751 molybdopterin-guanine 94.5 0.039 8.4E-07 52.3 3.8 27 173-199 5-31 (173)
391 PRK08533 flagellar accessory p 94.5 0.23 5E-06 50.1 9.7 53 173-232 23-75 (230)
392 PRK14721 flhF flagellar biosyn 94.4 0.27 5.8E-06 53.8 10.6 88 173-266 190-278 (420)
393 cd02023 UMPK Uridine monophosp 94.4 0.027 5.9E-07 55.5 2.8 23 176-198 1-23 (198)
394 CHL00081 chlI Mg-protoporyphyr 94.4 0.044 9.6E-07 58.3 4.5 49 151-199 15-63 (350)
395 PRK00279 adk adenylate kinase; 94.4 0.17 3.6E-06 50.6 8.5 24 176-199 2-25 (215)
396 KOG0739 AAA+-type ATPase [Post 94.4 0.19 4E-06 50.7 8.4 91 153-268 133-236 (439)
397 PF07726 AAA_3: ATPase family 94.4 0.044 9.4E-07 48.6 3.6 40 177-223 2-41 (131)
398 COG3640 CooC CO dehydrogenase 94.4 0.079 1.7E-06 51.7 5.6 42 176-220 2-43 (255)
399 PRK12597 F0F1 ATP synthase sub 94.4 0.22 4.7E-06 55.1 9.8 93 172-267 141-247 (461)
400 TIGR02322 phosphon_PhnN phosph 94.4 0.035 7.7E-07 53.7 3.4 25 175-199 2-26 (179)
401 PRK05342 clpX ATP-dependent pr 94.4 0.13 2.8E-06 56.5 8.0 47 153-199 71-133 (412)
402 PRK00131 aroK shikimate kinase 94.3 0.039 8.4E-07 53.1 3.6 27 173-199 3-29 (175)
403 cd02024 NRK1 Nicotinamide ribo 94.3 0.031 6.8E-07 54.0 2.9 23 176-198 1-23 (187)
404 PRK05439 pantothenate kinase; 94.3 0.35 7.7E-06 50.6 10.8 81 172-258 84-166 (311)
405 PF00625 Guanylate_kin: Guanyl 94.3 0.059 1.3E-06 52.3 4.9 36 174-213 2-37 (183)
406 KOG0652 26S proteasome regulat 94.3 1.9 4.1E-05 42.7 14.8 172 146-342 161-372 (424)
407 PRK06995 flhF flagellar biosyn 94.3 0.21 4.5E-06 55.6 9.4 59 174-234 256-315 (484)
408 PF13481 AAA_25: AAA domain; P 94.3 0.15 3.3E-06 49.9 7.8 42 174-217 32-81 (193)
409 cd01135 V_A-ATPase_B V/A-type 94.3 0.23 5.1E-06 50.6 9.1 96 173-268 68-177 (276)
410 PRK05922 type III secretion sy 94.2 0.096 2.1E-06 57.2 6.7 90 173-268 156-258 (434)
411 PRK14723 flhF flagellar biosyn 94.2 0.23 5E-06 58.1 10.1 87 174-267 185-273 (767)
412 cd02029 PRK_like Phosphoribulo 94.2 0.23 5E-06 50.3 8.9 79 176-258 1-85 (277)
413 PRK09280 F0F1 ATP synthase sub 94.2 0.27 5.9E-06 54.1 10.1 92 173-267 143-248 (463)
414 PRK10416 signal recognition pa 94.2 0.29 6.3E-06 51.8 10.1 27 173-199 113-139 (318)
415 PRK08149 ATP synthase SpaL; Va 94.2 0.18 3.9E-06 55.1 8.6 90 173-268 150-252 (428)
416 PRK06217 hypothetical protein; 94.2 0.038 8.2E-07 53.7 3.2 24 176-199 3-26 (183)
417 PRK13407 bchI magnesium chelat 94.1 0.057 1.2E-06 57.3 4.6 48 151-198 6-53 (334)
418 PF06745 KaiC: KaiC; InterPro 94.1 0.21 4.5E-06 50.4 8.5 89 173-267 18-125 (226)
419 COG0542 clpA ATP-binding subun 94.1 0.055 1.2E-06 62.8 4.7 156 153-325 170-346 (786)
420 COG1124 DppF ABC-type dipeptid 94.1 0.056 1.2E-06 53.2 4.1 28 172-199 31-58 (252)
421 COG0194 Gmk Guanylate kinase [ 94.1 0.065 1.4E-06 50.6 4.3 25 174-198 4-28 (191)
422 cd01129 PulE-GspE PulE/GspE Th 94.1 0.15 3.3E-06 52.5 7.5 104 156-273 62-165 (264)
423 TIGR00416 sms DNA repair prote 94.0 0.22 4.8E-06 55.5 9.3 50 163-216 81-132 (454)
424 PRK05986 cob(I)alamin adenolsy 94.0 0.21 4.5E-06 48.0 7.7 119 173-295 21-158 (191)
425 PRK08927 fliI flagellum-specif 94.0 0.23 4.9E-06 54.5 9.0 90 173-268 157-259 (442)
426 cd00227 CPT Chloramphenicol (C 94.0 0.051 1.1E-06 52.3 3.6 26 174-199 2-27 (175)
427 PF05970 PIF1: PIF1-like helic 94.0 0.1 2.3E-06 56.7 6.4 39 161-199 9-47 (364)
428 cd02020 CMPK Cytidine monophos 93.9 0.043 9.2E-07 51.0 3.0 24 176-199 1-24 (147)
429 PRK05201 hslU ATP-dependent pr 93.9 0.15 3.3E-06 55.1 7.3 75 153-231 15-107 (443)
430 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.067 1.4E-06 53.3 4.4 24 174-197 29-52 (213)
431 PRK13949 shikimate kinase; Pro 93.9 0.051 1.1E-06 51.9 3.4 25 175-199 2-26 (169)
432 TIGR03498 FliI_clade3 flagella 93.9 0.23 5E-06 54.3 8.8 91 173-268 139-241 (418)
433 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.34 7.3E-06 48.1 9.5 26 173-198 33-58 (207)
434 TIGR03263 guanyl_kin guanylate 93.9 0.044 9.6E-07 53.1 3.0 24 175-198 2-25 (180)
435 cd00267 ABC_ATPase ABC (ATP-bi 93.9 0.11 2.4E-06 49.0 5.6 116 173-300 24-145 (157)
436 PRK14530 adenylate kinase; Pro 93.9 0.05 1.1E-06 54.4 3.5 25 175-199 4-28 (215)
437 cd00071 GMPK Guanosine monopho 93.9 0.047 1E-06 50.1 3.0 24 176-199 1-24 (137)
438 cd02021 GntK Gluconate kinase 93.9 0.044 9.5E-07 51.3 2.8 23 176-198 1-23 (150)
439 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.13 2.7E-06 50.9 6.2 25 173-197 25-49 (200)
440 TIGR00176 mobB molybdopterin-g 93.8 0.078 1.7E-06 49.7 4.5 35 176-213 1-35 (155)
441 PTZ00185 ATPase alpha subunit; 93.8 0.31 6.7E-06 53.8 9.5 96 173-268 188-300 (574)
442 COG0467 RAD55 RecA-superfamily 93.8 0.15 3.2E-06 52.7 7.0 50 173-228 22-71 (260)
443 PF00560 LRR_1: Leucine Rich R 93.8 0.018 4E-07 33.8 0.1 22 559-582 1-22 (22)
444 cd01672 TMPK Thymidine monopho 93.8 0.15 3.2E-06 50.2 6.7 24 176-199 2-25 (200)
445 COG1224 TIP49 DNA helicase TIP 93.8 0.12 2.7E-06 53.4 5.9 53 153-207 39-96 (450)
446 COG1703 ArgK Putative periplas 93.8 0.091 2E-06 53.3 4.9 65 163-229 38-104 (323)
447 PRK13947 shikimate kinase; Pro 93.7 0.052 1.1E-06 52.0 3.2 24 176-199 3-26 (171)
448 cd01132 F1_ATPase_alpha F1 ATP 93.7 0.28 6.1E-06 50.1 8.5 90 173-268 68-172 (274)
449 KOG0729 26S proteasome regulat 93.7 0.33 7.2E-06 48.0 8.5 44 156-199 180-236 (435)
450 TIGR03305 alt_F1F0_F1_bet alte 93.7 0.17 3.6E-06 55.6 7.3 93 173-268 137-243 (449)
451 TIGR00041 DTMP_kinase thymidyl 93.7 0.17 3.6E-06 49.7 6.9 25 175-199 4-28 (195)
452 cd00820 PEPCK_HprK Phosphoenol 93.7 0.06 1.3E-06 46.4 3.1 23 173-195 14-36 (107)
453 KOG0727 26S proteasome regulat 93.7 0.31 6.8E-06 47.8 8.2 44 156-199 158-214 (408)
454 PF03308 ArgK: ArgK protein; 93.7 0.11 2.3E-06 52.0 5.2 63 161-225 14-78 (266)
455 PRK00300 gmk guanylate kinase; 93.6 0.06 1.3E-06 53.4 3.5 26 173-198 4-29 (205)
456 TIGR00073 hypB hydrogenase acc 93.6 0.073 1.6E-06 52.8 4.1 32 168-199 16-47 (207)
457 TIGR02655 circ_KaiC circadian 93.6 0.43 9.3E-06 54.1 10.6 98 163-267 250-363 (484)
458 cd01136 ATPase_flagellum-secre 93.5 0.49 1.1E-05 49.9 10.2 90 173-268 68-170 (326)
459 PF08477 Miro: Miro-like prote 93.5 0.063 1.4E-06 47.8 3.2 23 177-199 2-24 (119)
460 PRK12678 transcription termina 93.5 0.12 2.6E-06 57.5 5.8 97 165-267 406-513 (672)
461 cd00464 SK Shikimate kinase (S 93.5 0.061 1.3E-06 50.5 3.2 23 177-199 2-24 (154)
462 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.12 2.7E-06 54.2 5.6 47 153-199 61-113 (358)
463 COG0396 sufC Cysteine desulfur 93.5 0.3 6.5E-06 47.7 7.7 62 244-307 149-216 (251)
464 PRK14527 adenylate kinase; Pro 93.5 0.073 1.6E-06 52.1 3.9 27 173-199 5-31 (191)
465 COG0003 ArsA Predicted ATPase 93.5 0.14 3E-06 53.9 6.1 49 174-226 2-50 (322)
466 KOG2123 Uncharacterized conser 93.5 0.027 5.8E-07 56.0 0.7 34 512-545 38-71 (388)
467 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.084 1.8E-06 52.1 4.2 121 173-302 28-158 (204)
468 PRK05057 aroK shikimate kinase 93.5 0.07 1.5E-06 51.1 3.6 26 174-199 4-29 (172)
469 PRK10078 ribose 1,5-bisphospho 93.4 0.059 1.3E-06 52.5 3.0 24 175-198 3-26 (186)
470 PRK07132 DNA polymerase III su 93.4 3.2 7E-05 43.5 16.0 168 162-356 5-184 (299)
471 TIGR01420 pilT_fam pilus retra 93.4 0.093 2E-06 56.5 4.7 113 172-297 120-232 (343)
472 PF03193 DUF258: Protein of un 93.4 0.095 2.1E-06 48.9 4.1 36 160-198 24-59 (161)
473 PRK14529 adenylate kinase; Pro 93.4 0.29 6.2E-06 48.8 7.8 82 177-268 3-87 (223)
474 TIGR01313 therm_gnt_kin carboh 93.4 0.055 1.2E-06 51.4 2.6 22 177-198 1-22 (163)
475 cd01122 GP4d_helicase GP4d_hel 93.3 0.61 1.3E-05 48.5 10.7 53 173-230 29-81 (271)
476 PRK05688 fliI flagellum-specif 93.3 0.33 7.1E-06 53.4 8.8 90 173-268 167-269 (451)
477 KOG0737 AAA+-type ATPase [Post 93.3 0.5 1.1E-05 49.5 9.6 27 173-199 126-152 (386)
478 COG1116 TauB ABC-type nitrate/ 93.3 0.066 1.4E-06 53.1 3.1 26 173-198 28-53 (248)
479 PF02374 ArsA_ATPase: Anion-tr 93.3 0.12 2.6E-06 54.5 5.3 46 175-224 2-47 (305)
480 PF13245 AAA_19: Part of AAA d 93.3 0.11 2.3E-06 42.0 3.8 26 173-198 9-34 (76)
481 cd01134 V_A-ATPase_A V/A-type 93.3 1 2.2E-05 47.6 11.8 58 165-228 147-206 (369)
482 PRK12339 2-phosphoglycerate ki 93.3 0.081 1.8E-06 51.8 3.7 25 174-198 3-27 (197)
483 PRK13975 thymidylate kinase; P 93.3 0.077 1.7E-06 52.2 3.6 25 175-199 3-27 (196)
484 KOG3864 Uncharacterized conser 93.2 0.0085 1.8E-07 56.8 -3.0 98 631-732 92-192 (221)
485 smart00534 MUTSac ATPase domai 93.2 0.038 8.2E-07 53.8 1.3 22 176-197 1-22 (185)
486 PF00158 Sigma54_activat: Sigm 93.2 0.34 7.4E-06 46.1 7.8 44 155-198 1-46 (168)
487 PRK03846 adenylylsulfate kinas 93.2 0.086 1.9E-06 51.9 3.8 28 172-199 22-49 (198)
488 cd03243 ABC_MutS_homologs The 93.2 0.044 9.6E-07 54.2 1.7 24 174-197 29-52 (202)
489 PRK14737 gmk guanylate kinase; 93.2 0.081 1.8E-06 51.3 3.5 26 173-198 3-28 (186)
490 PF03266 NTPase_1: NTPase; In 93.1 0.11 2.4E-06 49.3 4.3 23 177-199 2-24 (168)
491 TIGR01040 V-ATPase_V1_B V-type 93.1 0.3 6.5E-06 53.4 8.0 95 173-267 140-257 (466)
492 PRK07594 type III secretion sy 93.1 0.39 8.4E-06 52.7 8.9 91 172-268 153-256 (433)
493 PF06068 TIP49: TIP49 C-termin 93.1 0.15 3.2E-06 53.7 5.4 47 153-199 24-75 (398)
494 TIGR00455 apsK adenylylsulfate 93.1 0.35 7.6E-06 47.0 7.8 28 172-199 16-43 (184)
495 cd00984 DnaB_C DnaB helicase C 93.0 0.58 1.3E-05 47.7 9.9 53 173-230 12-64 (242)
496 COG1126 GlnQ ABC-type polar am 93.0 0.081 1.8E-06 51.1 3.1 36 173-213 27-62 (240)
497 KOG0780 Signal recognition par 93.0 0.63 1.4E-05 48.8 9.7 57 173-234 100-158 (483)
498 PRK06761 hypothetical protein; 93.0 0.17 3.7E-06 52.1 5.7 25 175-199 4-28 (282)
499 COG1936 Predicted nucleotide k 93.0 0.075 1.6E-06 49.4 2.8 20 176-195 2-21 (180)
500 PRK06731 flhF flagellar biosyn 93.0 0.61 1.3E-05 48.0 9.7 89 173-267 74-164 (270)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-93 Score=826.01 Aligned_cols=793 Identities=40% Similarity=0.687 Sum_probs=634.2
Q ss_pred HhHHHhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003317 15 FTRCLDCCVGRTTYVFNIEDNLVALRTKMDDLIEARNDVMRRVTIAERQQMTRLNRVQLWLTRVQGLAIEVDQLQEVKSQ 94 (831)
Q Consensus 15 ~~~l~~~~~~e~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld~~~~ 94 (831)
++++.+.+.+++..+.+.++.+..+++++..|+.++.| |+.++.+ ...+..|.+.+++++|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677778888999999999999999999999988 4444433 467889999999999999999998875
Q ss_pred Hhh----------------hhhcCCcccCCcchhhhHHHHHHHHHHHHHhHHhcCCcccccc-CCCCcccccCCCCCc--
Q 003317 95 EVE----------------RLCLGGFCSKNCKSSYKFGKKVAKKLLEVSTLIDEGAFHVVAD-RQPEAAVEERPIEPT-- 155 (831)
Q Consensus 95 ~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 155 (831)
... +-|..++|.+.....+.+++++.+.++.++.+..++.|..+.. ..+......+|....
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 432 1233456666777888899999999999999987776665553 223333444443333
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 003317 156 VGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD 235 (831)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (831)
||.+..++++.+.|.+++..+++|+||||+||||||+.++|+.. .++.+|+.++||+||+.++...++++|+..++...
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~-~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFD-EVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccc-hhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999999998889999999999999999999999985 37899999999999999999999999999999866
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhh-ccCCceEEcCCCCh
Q 003317 236 NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGA-MKAHEYFKVECLAH 314 (831)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~L~~ 314 (831)
..+.....++++..|.+.|++|||+|||||||+..+|+.++.++|...+||||++|||+++||.. |++...++++.|++
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 65556666899999999999999999999999999999999999999999999999999999998 88889999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhcc-cCCCCCch-hhhh
Q 003317 315 EKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRRS-ASEFPGMD-EVYP 392 (831)
Q Consensus 315 ~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~-~~~~ 392 (831)
+|||+||.+.++......++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.+++. .+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999886667777999999999999999999999999999999999999999999887 44555544 8999
Q ss_pred HHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHHHhcccccccC----C
Q 003317 393 RLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNND-RSRAINEGYYIIGVVLHSCLLEEAG----N 467 (831)
Q Consensus 393 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~----~ 467 (831)
+|.+||++||+ ++|.||+|||+||+||.|+++.|+.+||||||+.+.+ +..++++|+.|+.+|++++|++..+ .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999995 9999999999999999999999999999999999855 4889999999999999999998863 4
Q ss_pred CeEEeCHHHHHHHHHHHhhhhhcccceEEecCCCceeeccccccccccceeEEEeccccccccCC---------------
Q 003317 468 DWVKMHDVIRDMALWIATEIEKEKENYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF--------------- 532 (831)
Q Consensus 468 ~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~--------------- 532 (831)
.+|+|||+|||+|.++|++.+.+++++++..+.+....| ....|..+|++++.+|.+..++.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~---~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP---QVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc---cccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 799999999999999999888888888888776666666 66677778888887776543322
Q ss_pred -----------CCCCCCcccccccC---cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCc
Q 003317 533 -----------TPICPDLQTLFLKG---INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSM 598 (831)
Q Consensus 533 -----------~~~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 598 (831)
+..+|.||+|||++ ..+||.+|++|.|||||+++++ .++.+|.+ +++|.+|.+|++..+.....
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhhheecccccccccc
Confidence 23478888888884 7788999999999999999988 68888887 88888888888876653321
Q ss_pred --------cccc-----------cccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeec
Q 003317 599 --------ANVV-----------REVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVL 659 (831)
Q Consensus 599 --------~~~~-----------~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~ 659 (831)
.++. +....+++.+|++|+.+.++..+...+..+.....+.+..+.+.+.++. .....+
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~ 711 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLIS 711 (889)
T ss_pred ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeec
Confidence 0000 1223444555555555555443332223333333333334444443221 112223
Q ss_pred cccCCCCcceeeecCCCCCceeecccccCC-C-CCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCc
Q 003317 660 SLGELKNLHTLHMQFPFLDDLKFGCVRVGT-H-AFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGK 737 (831)
Q Consensus 660 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~-~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~ 737 (831)
++..+.+|+.|.+.+|...+....+..... . .|+++..+.+.+|.....+.|....|+|+.|++..|..++++++...
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k 791 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK 791 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHH
Confidence 677889999999999988764444433211 1 26788999999999999999988899999999999999998876322
Q ss_pred ccc-cc-CCCCCCcccee-cccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc--cccceEEeccchhhhhc
Q 003317 738 ISQ-VQ-NLDPFAKLEYL-VLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA--KDRKIVIRAKQHSWWAN 812 (831)
Q Consensus 738 ~~~-~~-~~~~~~~L~~L-~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~--~l~~~~i~~~~~~~~~~ 812 (831)
.-. .. ....|+++..+ .+.+.+.+.++.+....+++|+.+.+..||++.++|...... ..+...+...+..|-+.
T Consensus 792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~ 871 (889)
T KOG4658|consen 792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEG 871 (889)
T ss_pred HhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceee
Confidence 111 10 13456777777 588888888888888889999999999999999999975543 22344555456689999
Q ss_pred Ccccchhhhhhh
Q 003317 813 LKWEDEAAKNAF 824 (831)
Q Consensus 813 l~~~~~~~~~~~ 824 (831)
+.|.++.++..|
T Consensus 872 v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 872 VYWEDELTKLRF 883 (889)
T ss_pred EEehhhhhhhhc
Confidence 999999998887
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-59 Score=576.84 Aligned_cols=599 Identities=21% Similarity=0.286 Sum_probs=401.4
Q ss_pred CCcccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe---CCC----------
Q 003317 153 EPTVGLESTLDKVWSCLG--EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV---SKD---------- 217 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~---s~~---------- 217 (831)
+.+|||+.+++++..+|. .+++++|+|+||||+||||||+++|+... .+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~----~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS----RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh----hcCCeEEEeeccccccchhhccccccc
Confidence 578999999999998884 35789999999999999999999999865 78998887742 111
Q ss_pred -CC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCCh
Q 003317 218 -LK-IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 218 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
++ ...++++++.++....+. .... ...+++.++++|+||||||||+..+|+.+.......++||+||||||+.
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 11 123445555554321110 1111 2457788999999999999999988988876666667899999999999
Q ss_pred hHHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHH
Q 003317 296 EVCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQ 375 (831)
Q Consensus 296 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~ 375 (831)
.++..++..++|+++.+++++||+||+++||... ..++++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998887888999999999999999999999765 334568899999999999999999999999998 57899999999
Q ss_pred HHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 003317 376 VLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIGV 455 (831)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~ 455 (831)
.++..... ++..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.+... ..++.
T Consensus 413 ~L~~~~~~-----~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~~ 474 (1153)
T PLN03210 413 RLRNGLDG-----KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLKN 474 (1153)
T ss_pred HHHhCccH-----HHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChHH
Confidence 98764432 79999999999998745899999999999887654 46778887765432 12889
Q ss_pred HHhcccccccCCCeEEeCHHHHHHHHHHHhhhhh--cccceEEecC---------C-------------Cceee------
Q 003317 456 VLHSCLLEEAGNDWVKMHDVIRDMALWIATEIEK--EKENYLVEAG---------A-------------GLTEV------ 505 (831)
Q Consensus 456 L~~~~ll~~~~~~~~~mHdlv~d~a~~~~~~~~~--~~~~~~~~~~---------~-------------~~~~~------ 505 (831)
|+++||++.. ...+.|||++|++|+.+++++.. .+..+++... . ...++
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 9999999875 46799999999999999977531 1112221110 0 00000
Q ss_pred ----c---cc------------------ccccc-ccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcC
Q 003317 506 ----Q---VL------------------QGIER-WKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKAL 557 (831)
Q Consensus 506 ----~---~~------------------~~~~~-~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L 557 (831)
+ ++ ..+.. ..++|.|.+.++.+..+|....+.+|+.|++++ +..+|.++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 0 00 01111 135777777777777777776778888888887 77788888889
Q ss_pred CcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhccc
Q 003317 558 VNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHK 637 (831)
Q Consensus 558 ~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~ 637 (831)
++|++|+|++|..+..+|. ++.+++|++|++.+|.... ..+..+.+|++|+.|++..+. .+..++...
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-------~lp~si~~L~~L~~L~L~~c~--~L~~Lp~~i- 701 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-------ELPSSIQYLNKLEDLDMSRCE--NLEILPTGI- 701 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-------ccchhhhccCCCCEEeCCCCC--CcCccCCcC-
Confidence 9999999998877888885 7888999999998886544 245566777777777766432 122222221
Q ss_pred ccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecc---------------------ccc----CCCCC
Q 003317 638 LKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGC---------------------VRV----GTHAF 692 (831)
Q Consensus 638 l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------------------~~~----~~~~l 692 (831)
..++|+.|.+++|.....++. ...+|+.|+++++....++... ... ....+
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 123566666666543222211 1123333433333321111000 000 00012
Q ss_pred CCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccccccc---------
Q 003317 693 HSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLK--------- 762 (831)
Q Consensus 693 ~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--------- 762 (831)
++|+.|+|++|+.+..+| +++++++|+.|+|++|+.++.+|. .. .+++|+.|+|++|.++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------GI-NLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--------CC-CccccCEEECCCCCcccccccccccc
Confidence 455556665555555544 255556666666666555555543 11 33444444444443333
Q ss_pred -----------ccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEeccc
Q 003317 763 -----------SIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIRAKQ 806 (831)
Q Consensus 763 -----------~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~~~~ 806 (831)
.+|.....+++|+.|++.+|++|+.+|.....+ .|+.+.+.+|.
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 233333446666667777777776666654433 45555555553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-45 Score=388.02 Aligned_cols=281 Identities=35% Similarity=0.634 Sum_probs=232.4
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 003317 158 LESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD 235 (831)
Q Consensus 158 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (831)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++.. ++.+|+.++|+.++...+...++..|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~--~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR--IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH--HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc--cccccccccccccccccccccccccccccccccc
Confidence 78999999999988 7899999999999999999999999966 6799999999999999999999999999999875
Q ss_pred CCC-CCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhhccC-CceEEcCCCC
Q 003317 236 NSW-RSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGAMKA-HEYFKVECLA 313 (831)
Q Consensus 236 ~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l~~L~ 313 (831)
... ...+.++....+++.++++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|++++|+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 433 45678889999999999999999999999999999988888777789999999999999877664 6789999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhcccCCCCC-chhhhh
Q 003317 314 HEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRRSASEFPG-MDEVYP 392 (831)
Q Consensus 314 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~-~~~~~~ 392 (831)
.+||++||.+.++.......+.+.+++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+ ...+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998665334456678899999999999999999999997766788999999888777644332 348999
Q ss_pred HHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcc
Q 003317 393 RLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNND 441 (831)
Q Consensus 393 ~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~ 441 (831)
++.+||+.||+ ++|.||+|||+||+++.|+++.|+++|++||||+..+
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999 8999999999999999999999999999999998754
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.1e-17 Score=207.11 Aligned_cols=89 Identities=20% Similarity=0.407 Sum_probs=60.9
Q ss_pred CCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCC
Q 003317 692 FHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPF 771 (831)
Q Consensus 692 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~ 771 (831)
+++|+.|+|++|..+..+|.+ .++|+.|+|++ +.++.+|. .+..+++|+.|++++|++++.++.....+
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~-n~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI--STNISDLNLSR-TGIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred ccccCEEECCCCCcccccccc--ccccCEeECCC-CCCccChH--------HHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 344444444444444333322 23444444444 23333333 56789999999999999999999888889
Q ss_pred CCccEEeecCCCCCCCCCCC
Q 003317 772 PQLMEIRVNGCPILQKLPLD 791 (831)
Q Consensus 772 p~L~~L~l~~C~~L~~lp~~ 791 (831)
++|+.+++++|++|+.++..
T Consensus 893 ~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred cCCCeeecCCCcccccccCC
Confidence 99999999999999987653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=3.9e-17 Score=202.27 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=129.5
Q ss_pred cccceeEEEeccccccccCCCCCCCCcccccccC---cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 513 RWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG---INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++++++|++++|.+....+...+++|++|++++ ...+|..+++|++|++|+|++|.....+|.. ++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeee
Confidence 4556666666666665433334566666666665 2346666677777777777766433455553 66677777777
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+.. ..+..+.++++|+.|++..+.+.. .++......++|+.|+++++.-....+ ..+..+++|+.
T Consensus 195 L~~n~l~~-------~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 264 (968)
T PLN00113 195 LASNQLVG-------QIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQY 264 (968)
T ss_pred ccCCCCcC-------cCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCE
Confidence 76665543 234455555555555555443321 011111112345555555443211111 13444455555
Q ss_pred eeecCCCCCceeeccccc--------------------CCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccC
Q 003317 670 LHMQFPFLDDLKFGCVRV--------------------GTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCAN 728 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~--------------------~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~ 728 (831)
|++++|......+..+.. ....+++|+.|++++|.....+| ++..+++|+.|++++|..
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 555544333211122211 00124445555554443222222 244455555555554433
Q ss_pred ccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEe
Q 003317 729 MEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIR 803 (831)
Q Consensus 729 l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~ 803 (831)
...++. .++.+++|+.|+++++.-...++.....+++|+.|++++|+-...+|...... +|+.+.+.
T Consensus 345 ~~~~p~--------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 345 SGEIPK--------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred cCcCCh--------HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 223322 34445555556555543333334334445566666666554444455433222 45555554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=6e-19 Score=186.25 Aligned_cols=260 Identities=22% Similarity=0.238 Sum_probs=173.7
Q ss_pred cccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchh-hhcCCcccEEeccCCCCCCCCChhhhcCCcc
Q 003317 509 QGIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTTFLHPIPSPLISSFSM 584 (831)
Q Consensus 509 ~~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~ 584 (831)
..+-.++.+..|+|+.|.+++.|.. ..-+++-+|+|++ |+.+|.. +.+|..|-+||||+| .+..+|+. +.+|.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhh
Confidence 4677789999999999999999887 7888999999998 8899965 468999999999999 79999997 999999
Q ss_pred CcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCC
Q 003317 585 LLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGEL 664 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l 664 (831)
||+|++++|....+ .+..|..++.|++|.++... .++..++.......+|+.++++.++ ...++. .+-++
T Consensus 175 LqtL~Ls~NPL~hf-------QLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe-cly~l 244 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHF-------QLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPIVPE-CLYKL 244 (1255)
T ss_pred hhhhhcCCChhhHH-------HHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCcchH-HHhhh
Confidence 99999999977663 55666677777777766432 1233333333333467777777554 333332 45677
Q ss_pred CCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEecccC-ccccccCC-c----
Q 003317 665 KNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVSTCAN-MEEIISPG-K---- 737 (831)
Q Consensus 665 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~-l~~l~~~~-~---- 737 (831)
++|+.|++++|.+.++.... + ...+|++|+++.+ +++.+|. +.+|++|+.|++.++.. .+.+|... .
T Consensus 245 ~~LrrLNLS~N~iteL~~~~-~----~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTE-G----EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhheeccCcCceeeeeccH-H----HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 88888888888776643211 1 1456777777775 5666653 55666666666655321 12232200 0
Q ss_pred ------cccc----cCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCC
Q 003317 738 ------ISQV----QNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQK 787 (831)
Q Consensus 738 ------~~~~----~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~ 787 (831)
+..+ +.+..+++|+.|.|++ +.|-.+|..+.-+|.|+.|++...|+|..
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 0000 0445566666666655 45555665566666667777766666663
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=1.3e-16 Score=197.57 Aligned_cols=272 Identities=18% Similarity=0.135 Sum_probs=184.0
Q ss_pred ccccccceeEEEecccccc-ccCCC-CCCCCcccccccC---cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCcc
Q 003317 510 GIERWKGVRKISLMQNQIR-NLPFT-PICPDLQTLFLKG---INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSM 584 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~-~lp~~-~~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~ 584 (831)
.+..+.++++|++++|.+. .+|.. .++++|++|++++ ...+|..++++++|++|+|++|.....+|.. ++++++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~ 237 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTS 237 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCC
Confidence 3556667777777777664 34443 6677777777766 3356777777777777777777433456664 777777
Q ss_pred CcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCC
Q 003317 585 LLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGEL 664 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l 664 (831)
|++|++++|.+.. ..+..+.++++|+.|++..+.+.. .++.......+|+.|+++++.-....+ ..+..+
T Consensus 238 L~~L~L~~n~l~~-------~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l 307 (968)
T PLN00113 238 LNHLDLVYNNLTG-------PIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQL 307 (968)
T ss_pred CCEEECcCceecc-------ccChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCC-hhHcCC
Confidence 7777777776654 245566777777777776554321 111111123478888888765322222 245678
Q ss_pred CCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccC
Q 003317 665 KNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQN 743 (831)
Q Consensus 665 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 743 (831)
++|+.|++++|......+.++. .+++|+.|++++|.....+| .++.+++|+.|++++|.....++. .
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~--------~ 375 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT----SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE--------G 375 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh----cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh--------h
Confidence 8999999998877654344443 48999999999986555566 578899999999999765445544 5
Q ss_pred CCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEec
Q 003317 744 LDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIRA 804 (831)
Q Consensus 744 ~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~~ 804 (831)
+..+++|+.|++++++-...++.....+++|+.|++.+|.--..+|...... .++.+.+.+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 6678899999999976555666667789999999999987555677644333 455566553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.9e-17 Score=174.16 Aligned_cols=278 Identities=19% Similarity=0.240 Sum_probs=167.3
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++.+|+|.+|.|.++... ..++.||+|||+. +.++| .++..=.++++|+|++| .|+.+..+.+.+|.+|-+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeee
Confidence 4688888888888877654 6778888888887 66665 33444457888888888 67777777777888888888
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchh-----HHHHHhhcccc-----------------cccccceee
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR-----ALERFLSFHKL-----------------KSCTGSLYL 647 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~-----~l~~l~~~~~l-----------------~~~L~~L~l 647 (831)
+++|.+..+ .+..+++|++|+.|++..+.+. .+++++++.++ +.+++.|+|
T Consensus 204 LsrNrittL-------p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 204 LSRNRITTL-------PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred cccCccccc-------CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 888877762 3445555666666665544332 22222222111 234555555
Q ss_pred ccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccc-----------
Q 003317 648 NVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LAL----------- 714 (831)
Q Consensus 648 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~----------- 714 (831)
..+. ...+....+.++..|+.|+++.|.+..+.++... ..++|+.|+|+++ .++.++. +..
T Consensus 277 ~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws----ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 277 ETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS----FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred ccch-hhhhhcccccccchhhhhccchhhhheeecchhh----hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc
Confidence 5443 2333333566777777788877776665444332 2567777777765 4544432 333
Q ss_pred -------------cCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCC-CCCCCCccEEeec
Q 003317 715 -------------APNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVN 780 (831)
Q Consensus 715 -------------l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~ 780 (831)
+.+|+.|+|++ +.+...++. +.. .+.++|+|+.|.+.+ +++++|+.. ...+++|++|++.
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IED---aa~-~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIED---AAV-AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEec---chh-hhccchhhhheeecC-ceeeecchhhhccCcccceecCC
Confidence 44555555554 223222221 011 566789999999988 588888753 4668999999997
Q ss_pred CCCCCCCCCCCCccccccc------eEEeccchhhhhc
Q 003317 781 GCPILQKLPLDSSSAKDRK------IVIRAKQHSWWAN 812 (831)
Q Consensus 781 ~C~~L~~lp~~~~~~~l~~------~~i~~~~~~~~~~ 812 (831)
+.+-..-=|....+..|+. -.++||+-.|..+
T Consensus 425 ~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred CCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 7543222222222222222 2466788777763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=5.3e-18 Score=179.20 Aligned_cols=242 Identities=20% Similarity=0.218 Sum_probs=141.2
Q ss_pred CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhc
Q 003317 534 PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELV 611 (831)
Q Consensus 534 ~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 611 (831)
..+..|.+|||+. +.+.|..+..-+++-+|+||+| .|..+|..++-+|+-|-.||+++|.... .+..++
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~--------LPPQ~R 170 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM--------LPPQIR 170 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh--------cCHHHH
Confidence 4445555555554 5555555555556666666665 4566665555566666666666655544 344555
Q ss_pred CCcCCCceeEeecchh--HHHHHhhcccccccccceeeccccC-CceeeeccccCCCCcceeeecCCCCCceeecccccC
Q 003317 612 QLDHLNELSMSLHSIR--ALERFLSFHKLKSCTGSLYLNVWEH-SNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVG 688 (831)
Q Consensus 612 ~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 688 (831)
.|.+|++|.++.+... .+.+++++ +.|..|++++..+ ...++ .++..+.||..++++.|+...+ |+.+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsm----tsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~v-Pecl--- 241 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSM----TSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIV-PECL--- 241 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccc----hhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcc-hHHH---
Confidence 6666666666655443 22333333 3566666666543 12222 2566777888888877754433 2322
Q ss_pred CCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc---------
Q 003317 689 THAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL--------- 758 (831)
Q Consensus 689 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~--------- 758 (831)
..+++|+.|+|+++ .++.+. ..+.-.+|+.|+++. +.++.+|. .+..+++|+.|.+.++
T Consensus 242 -y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--------avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 242 -YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPD--------AVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred -hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchH--------HHhhhHHHHHHHhccCcccccCCcc
Confidence 24788888888886 555554 245567888888888 55666665 3334444444444332
Q ss_pred ---------------ccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEecc
Q 003317 759 ---------------MNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIRAK 805 (831)
Q Consensus 759 ---------------~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~~~ 805 (831)
++|+-.|.+.+.++.|+.|.+ +|+.|..||..+.-+ -++.+.++..
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCC
Confidence 355555555666777777777 567777888776654 4666666633
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=1e-14 Score=154.01 Aligned_cols=196 Identities=20% Similarity=0.282 Sum_probs=89.2
Q ss_pred ccceeEEEeccccccccCCC-CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 514 WKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
+.+++.+++..|.+..+|.. ....||..|+|.. |.++. +++.-++.||.||||.| .|.++|...+.+=.++++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEe
Confidence 34444444444444444444 2333455555544 33332 34445555566666655 45555554444555566666
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.|..+ ....+.+|.+|-.|.++.+.+..++... .+-.++|+.|+|..+. ........+.++++|+.
T Consensus 180 La~N~It~l-------~~~~F~~lnsL~tlkLsrNrittLp~r~--Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 180 LASNRITTL-------ETGHFDSLNSLLTLKLSRNRITTLPQRS--FKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQN 249 (873)
T ss_pred ecccccccc-------ccccccccchheeeecccCcccccCHHH--hhhcchhhhhhccccc-eeeehhhhhcCchhhhh
Confidence 666655552 2233444555555566555554332210 0112245666665543 22232234445555555
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC--CcccccCCCceEEEec
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL--TWLALAPNVRNIGVST 725 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~ 725 (831)
|.+..|....+..+.+- .+.+++.|+|..+ ++..+ .|+..|..|+.|+++.
T Consensus 250 lklqrN~I~kL~DG~Fy----~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFY----GLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhcCcccccCccee----eecccceeecccc-hhhhhhcccccccchhhhhccch
Confidence 55555544333222221 1444444444443 23222 1344444444444444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=5.5e-15 Score=149.42 Aligned_cols=256 Identities=23% Similarity=0.205 Sum_probs=147.5
Q ss_pred cccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhh-cCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 509 QGIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELK-ALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 509 ~~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~-~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
+.++.+.++..|.+..|.+..+|.++.|..|..|.+.. ++.+|..++ .|.+|.+|||+.| +++++|.+ ++.|.+|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhh
Confidence 35666777777888888888888778888888777775 777777765 7888888888888 67888876 7788888
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHH-------------Hhhcc----------------
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALER-------------FLSFH---------------- 636 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~-------------l~~~~---------------- 636 (831)
++||+++|.+.. .+-.+++| +|+.|-+..+.+.++.. +.+-.
T Consensus 278 ~rLDlSNN~is~--------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 278 ERLDLSNNDISS--------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred hhhcccCCcccc--------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 888888877776 33345555 55555444333322211 11000
Q ss_pred ----------cccccccceeeccccCCceeee----------------c--ccc-------CCCCcceeeecCCCCCcee
Q 003317 637 ----------KLKSCTGSLYLNVWEHSNWLDV----------------L--SLG-------ELKNLHTLHMQFPFLDDLK 681 (831)
Q Consensus 637 ----------~l~~~L~~L~l~~~~~~~~~~~----------------~--~l~-------~l~~L~~L~l~~~~~~~~~ 681 (831)
......+.|++++-. .+.++. . ++. .++.+.+.-+..+....+.
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 001133444433321 111110 0 000 1111111111122222222
Q ss_pred ecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccC--------------Ccccccc--CC
Q 003317 682 FGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISP--------------GKISQVQ--NL 744 (831)
Q Consensus 682 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~--------------~~~~~~~--~~ 744 (831)
+..+ ..+++|..|+|+++ .+.++| .++.+-.|+.|+|+.+ ....+|.. ...+.+. .+
T Consensus 428 ~~~l----~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 428 PLEL----SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred hHHH----Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHh
Confidence 2222 23677777777665 445555 3566666777777663 23333220 0001111 46
Q ss_pred CCCCccceecccccccccccCCCCCCCCCccEEeecCCC
Q 003317 745 DPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 745 ~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
+++.+|..|++.+ +.+..+|...+.|.+|++|++.|.|
T Consensus 502 ~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 KNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 7888999999988 5888899999999999999999865
No 12
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=6.3e-12 Score=148.13 Aligned_cols=238 Identities=22% Similarity=0.251 Sum_probs=139.7
Q ss_pred CCCcccccccC----cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhh
Q 003317 536 CPDLQTLFLKG----INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDEL 610 (831)
Q Consensus 536 ~~~Lr~L~L~~----~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L 610 (831)
+++|++|.+.+ +..++ ..+..+++|++|||++|..+.++|.. |+.|-+|++|+++++.+.. .|..+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~--------LP~~l 614 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISH--------LPSGL 614 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccc--------cchHH
Confidence 45677887776 33444 34778999999999999999999996 9999999999999999887 46667
Q ss_pred cCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc-CCceeeeccccCCCCcceeeecCCCCCceeecccccCC
Q 003317 611 VQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE-HSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGT 689 (831)
Q Consensus 611 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 689 (831)
++|+.|.+|++...+. +...+.......+|+.|.+.... ..+......+..+.+|+.|.+..+.. .+ ..-+....
T Consensus 615 ~~Lk~L~~Lnl~~~~~--l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-~e~l~~~~ 690 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGR--LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL-LEDLLGMT 690 (889)
T ss_pred HHHHhhheeccccccc--cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh-HhhhhhhH
Confidence 7777777777764432 11112222224578888886543 11122222445566777776655443 10 01001000
Q ss_pred CCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCC-CCCccceecccccccccccCCCC
Q 003317 690 HAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLD-PFAKLEYLVLENLMNLKSIYWSP 768 (831)
Q Consensus 690 ~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~-~~~~L~~L~L~~~~~l~~i~~~~ 768 (831)
.-....+.+.+.+|...+....+..+++|+.|.+.+|...+......... ... .||+|..+.+.+|..++...+.
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---~~~~~f~~l~~~~~~~~~~~r~l~~~- 766 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL---IVLLCFPNLSKVSILNCHMLRDLTWL- 766 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccccc---chhhhHHHHHHHHhhccccccccchh-
Confidence 00112234444444434444556778888888888877544332110000 111 2666666666666665554432
Q ss_pred CCCCCccEEeecCCCCCCCCCC
Q 003317 769 LPFPQLMEIRVNGCPILQKLPL 790 (831)
Q Consensus 769 ~~~p~L~~L~l~~C~~L~~lp~ 790 (831)
...|+|+.|.+..|+.+.....
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hccCcccEEEEecccccccCCC
Confidence 3456777777777766665433
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=7.6e-11 Score=145.50 Aligned_cols=293 Identities=15% Similarity=0.204 Sum_probs=180.0
Q ss_pred CCCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHH
Q 003317 151 PIEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWK 229 (831)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~ 229 (831)
....+|-|+.-.+++-+ ....+++.|+|++|.||||++.+..+.. + .++|+++.. +.+...+...++.
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~-----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK-----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC-----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 34567788765555432 1367899999999999999999987531 2 589999964 4466677777777
Q ss_pred HhCCCCCC-----------CCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc--cccccccC-CCCCCCCcEEEEEcC
Q 003317 230 KIGLCDNS-----------WRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV--DLTQLGVP-LPSPTTASKVVFTTR 293 (831)
Q Consensus 230 ~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~~l~~~-l~~~~~gs~ilvTtR 293 (831)
.++..... ....+.......+...+. +.+++|||||+.... ....+... +.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77421110 011222333444444443 689999999996532 11222212 223345678889999
Q ss_pred ChhHH---hhccCCceEEcC----CCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCC
Q 003317 294 FVEVC---GAMKAHEYFKVE----CLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQ 366 (831)
Q Consensus 294 ~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~ 366 (831)
...-. ..........+. +|+.+|+.++|....+.. -..+...+|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 74211 111112344555 999999999998765432 12355789999999999999998877754321
Q ss_pred hhHHHHHHHHHhcccCCCCCchhhhhHHhh-ccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhH
Q 003317 367 PEDWKYAIQVLRRSASEFPGMDEVYPRLKF-SYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRA 445 (831)
Q Consensus 367 ~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 445 (831)
.. ......+.. . +...+...+.- .++.||+ ..+..+...|+++ .++.+.+ . .+...
T Consensus 235 ~~--~~~~~~~~~----~-~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~-~-----~l~~~------ 291 (903)
T PRK04841 235 SL--HDSARRLAG----I-NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALI-V-----RVTGE------ 291 (903)
T ss_pred ch--hhhhHhhcC----C-CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHH-H-----HHcCC------
Confidence 10 011111100 0 01134444333 3789998 8999999999986 3333221 1 11221
Q ss_pred HHHHHHHHHHHHhcccccc-c--CCCeEEeCHHHHHHHHHHH
Q 003317 446 INEGYYIIGVVLHSCLLEE-A--GNDWVKMHDVIRDMALWIA 484 (831)
Q Consensus 446 ~~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~~~ 484 (831)
+.+...+++|...+++.. . +...|+.|++++++.....
T Consensus 292 -~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 -ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 223566899999999653 2 3357999999999998765
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=4.2e-15 Score=150.27 Aligned_cols=240 Identities=20% Similarity=0.260 Sum_probs=148.9
Q ss_pred ccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
++..+..+..+.+++|.+..+|+. ..+..+..|+.+. +.++|+.++.+..|+.|+.++| .+.++|++ |+.+..|+
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~-i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDS-IGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCch-HHHHhhhh
Confidence 445556777888888888877776 6777777777776 7778888888888888888888 57777876 88888888
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCC
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKN 666 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 666 (831)
.|+..+|++.. .+..+.++..|..+.+..+.+..+ +. ..-.|+.
T Consensus 141 dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l---------------------------~~-~~i~m~~ 184 (565)
T KOG0472|consen 141 DLDATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKAL---------------------------PE-NHIAMKR 184 (565)
T ss_pred hhhcccccccc--------CchHHHHHHHHHHhhccccchhhC---------------------------CH-HHHHHHH
Confidence 88888877776 344444444444444333222111 10 1112455
Q ss_pred cceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCC
Q 003317 667 LHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDP 746 (831)
Q Consensus 667 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 746 (831)
|++|+...|....++++ ++ .+.+|..|++..+ ++..+|.++.+..|+.|+++. +.++.++.. ....
T Consensus 185 L~~ld~~~N~L~tlP~~-lg----~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae-------~~~~ 250 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPE-LG----GLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAE-------HLKH 250 (565)
T ss_pred HHhcccchhhhhcCChh-hc----chhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHH-------Hhcc
Confidence 55555544433333332 22 2566666666664 556666666666666666655 445555442 3446
Q ss_pred CCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccccceEEe
Q 003317 747 FAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSAKDRKIVIR 803 (831)
Q Consensus 747 ~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~~l~~~~i~ 803 (831)
+++|..|++.+ +++++.|.+..-+.+|++|++++ ..+..+|....++.++.+.+.
T Consensus 251 L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~le 305 (565)
T KOG0472|consen 251 LNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALE 305 (565)
T ss_pred cccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhc
Confidence 66677777766 36666666666666677777765 466666666655555555555
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=6.9e-12 Score=144.53 Aligned_cols=238 Identities=22% Similarity=0.199 Sum_probs=120.8
Q ss_pred cceEEecCCCceeeccccccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCC
Q 003317 492 ENYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTT 569 (831)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~ 569 (831)
...+......+..+| ..+ ..+++.|++.+|.+..+|.. +++|++|++++ +..+|.. .++|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP--~~l--~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 203 NAVLNVGESGLTTLP--DCL--PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CcEEEcCCCCCCcCC--cch--hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 344444554555555 111 24667777777777766643 46677777766 5555532 245556666665
Q ss_pred CCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHh--------------hc
Q 003317 570 FLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFL--------------SF 635 (831)
Q Consensus 570 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~--------------~~ 635 (831)
.+..+|.. +.+|+.|++++|.+..+ +. .+++|+.|+++.+.+..++.++ .+
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt~L-----P~------~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQLTSL-----PV------LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 337 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCccccc-----cc------cccccceeECCCCccccCCCCcccccccccccCccccc
Confidence 45555431 13444555555544431 11 1123444444433332221110 00
Q ss_pred ccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCccccc
Q 003317 636 HKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALA 715 (831)
Q Consensus 636 ~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l 715 (831)
..+..+|+.|+++++. ...++ .+ .++|+.|++++|....++. .+.+|+.|++++| .+..+|.. .
T Consensus 338 P~lp~~Lq~LdLS~N~-Ls~LP--~l--p~~L~~L~Ls~N~L~~LP~--------l~~~L~~LdLs~N-~Lt~LP~l--~ 401 (788)
T PRK15387 338 PTLPSGLQELSVSDNQ-LASLP--TL--PSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGN-RLTSLPVL--P 401 (788)
T ss_pred cccccccceEecCCCc-cCCCC--CC--CcccceehhhccccccCcc--------cccccceEEecCC-cccCCCCc--c
Confidence 0111245555555433 22221 11 1345555555443332210 1346777777765 45555532 3
Q ss_pred CCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCC
Q 003317 716 PNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 716 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
++|+.|+++++. +..+|. .+.+|+.|++++ ++++.+|.....+++|+.|++++++
T Consensus 402 s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCc-CCCCCc-----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 567777777743 554432 134677888877 4677787777778888888888764
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=6.9e-10 Score=122.86 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=171.1
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
+.++||+++++++...+.+ .....+.|+|++|+|||++++.++++.. .....-..+++++....+...++..++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~--~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE--EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 6789999999999988733 3456788999999999999999999875 222234567777777778889999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc------cccccccCCCCCCCCcE--EEEEcCChhHH
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV------DLTQLGVPLPSPTTASK--VVFTTRFVEVC 298 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--ilvTtR~~~v~ 298 (831)
.++..........+.++....+.+.+. +++.+||||+++... .+..+...+ ....+++ +|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchh
Confidence 998752221133456777777777775 456899999997632 122222111 1122333 55555544332
Q ss_pred hhcc-------CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHH----hCCCchHHHHHHHHh--c--c
Q 003317 299 GAMK-------AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKE----CGGLPLALITIGRAM--A--C 363 (831)
Q Consensus 299 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~----c~GlPlai~~~~~~l--~--~ 363 (831)
.... ....+.+.+++.++..+++..++.... ....-..+..+.|++. .|..+.|+.++-.+. + .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2111 124678999999999999998874321 0001112333444444 455677776654322 1 1
Q ss_pred C---CChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHh-cCCC-CccccHHHHHHH--HHhcCC
Q 003317 364 K---KQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCC-LFPE-DYKIHKMSLIDY--WISEKI 436 (831)
Q Consensus 364 ~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~-~~~i~~~~li~~--W~aeg~ 436 (831)
. -+.+....+.+... .....-.+..||. +.|..+..++ .... ...+....+... .+++.+
T Consensus 266 ~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 24445555544331 1223446789997 4444333222 2221 133555555432 222221
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccccc
Q 003317 437 LDNNDRSRAINEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 437 i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 465 (831)
-.. +........|+++|...|++...
T Consensus 333 ~~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 110 11223456689999999998753
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.6e-11 Score=142.53 Aligned_cols=222 Identities=23% Similarity=0.272 Sum_probs=153.8
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
.+++.|++++|.+..+|.. .+++|++|++++ +..+|..+. .+|+.|+|++| .+..+|.. +. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~-l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPER-LP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChh-Hh--CCCCEEECcC
Confidence 5799999999999998875 346899999998 777887664 47999999999 68899975 43 5899999999
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+..+ | ..+. .+|+.|+++.+.+..++. .+...|+.|+++++. ...++. . ..++|+.|.+
T Consensus 272 N~L~~L-----P---~~l~--~sL~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls~N~-Lt~LP~-~--l~~sL~~L~L 332 (754)
T PRK15370 272 NKISCL-----P---ENLP--EELRYLSVYDNSIRTLPA-----HLPSGITHLNVQSNS-LTALPE-T--LPPGLKTLEA 332 (754)
T ss_pred CccCcc-----c---cccC--CCCcEEECCCCccccCcc-----cchhhHHHHHhcCCc-cccCCc-c--ccccceeccc
Confidence 887762 2 2222 467788887665543321 122467888887765 333321 1 1368999999
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
++|....++ ..+ +++|+.|++++| .+..+|. .-.++|+.|+|++|. +..+|. .+ .++|+.
T Consensus 333 s~N~Lt~LP-~~l------~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~-Lt~LP~--------~l--~~sL~~ 392 (754)
T PRK15370 333 GENALTSLP-ASL------PPELQVLDVSKN-QITVLPE-TLPPTITTLDVSRNA-LTNLPE--------NL--PAALQI 392 (754)
T ss_pred cCCccccCC-hhh------cCcccEEECCCC-CCCcCCh-hhcCCcCEEECCCCc-CCCCCH--------hH--HHHHHH
Confidence 888765543 222 468999999988 4666664 124789999999864 556654 22 247888
Q ss_pred ecccccccccccCCCC----CCCCCccEEeecCCC
Q 003317 753 LVLENLMNLKSIYWSP----LPFPQLMEIRVNGCP 783 (831)
Q Consensus 753 L~L~~~~~l~~i~~~~----~~~p~L~~L~l~~C~ 783 (831)
|+++++ ++..+|... ..+|++..|++.+.|
T Consensus 393 LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 393 MQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 888884 666666432 235788888888765
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=2.9e-13 Score=150.85 Aligned_cols=242 Identities=20% Similarity=0.258 Sum_probs=135.0
Q ss_pred cceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 515 KGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
.++.+++++.|.+..+|.. ..|.+|..|.... +..+|..+...++|++|.+.+| .+..+|+. ...+..|++|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeeh
Confidence 5788888888888888855 7888888888876 7778888888888888888888 68888875 7778888888888
Q ss_pred cccCCCccccccccchhhhcCCcC-CCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCccee
Q 003317 592 NCKSSSMANVVREVLIDELVQLDH-LNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTL 670 (831)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 670 (831)
.|.+..+ |. ..+..+.. |+.|+.+.+.+..++...+ +....|+.|++.++. .++-..+.+.++++|+.|
T Consensus 319 ~N~L~~l-----p~--~~l~v~~~~l~~ln~s~n~l~~lp~~~e--~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 319 SNNLPSL-----PD--NFLAVLNASLNTLNVSSNKLSTLPSYEE--NNHAALQELYLANNH-LTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred hcccccc-----ch--HHHhhhhHHHHHHhhhhccccccccccc--hhhHHHHHHHHhcCc-ccccchhhhccccceeee
Confidence 8877763 21 11111111 3333333222222111110 112345555555443 222222244555666666
Q ss_pred eecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEecccCccccccCCccccccCCCCCCc
Q 003317 671 HMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAK 749 (831)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~ 749 (831)
+++.|...+++...+. .+..|+.|+|+|+ +++.+|. +..++.|+.|...+ +.+...| .+..+|.
T Consensus 389 hLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP---------e~~~l~q 453 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP---------ELAQLPQ 453 (1081)
T ss_pred eecccccccCCHHHHh----chHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech---------hhhhcCc
Confidence 6666654444433332 3555666666665 4555542 44555555555544 3333333 2344555
Q ss_pred cceecccccccccccCCCCC-CCCCccEEeecCCCC
Q 003317 750 LEYLVLENLMNLKSIYWSPL-PFPQLMEIRVNGCPI 784 (831)
Q Consensus 750 L~~L~L~~~~~l~~i~~~~~-~~p~L~~L~l~~C~~ 784 (831)
|+.++++. ++|+.+..... .-|+|++|+++|.++
T Consensus 454 L~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 55555554 34443322211 125666666655543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=5.4e-13 Score=148.75 Aligned_cols=260 Identities=20% Similarity=0.243 Sum_probs=194.0
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
.++++|..+.|.+..+-..+--.+|++++++. ...+|+.++.+.+|..|++.+| .+..+|.. |...++|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhh
Confidence 56788888888877654446677899999997 8889999999999999999999 68999987 99999999999999
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+.. .+..+..+++|++|++.-+.+..++... +..+...++.|..+.+. ....+...=..++.|+.|.+
T Consensus 297 nel~y--------ip~~le~~~sL~tLdL~~N~L~~lp~~~-l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 297 NELEY--------IPPFLEGLKSLRTLDLQSNNLPSLPDNF-LAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred hhhhh--------CCCcccccceeeeeeehhccccccchHH-HhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHH
Confidence 87765 5666777888888888877665544311 11111224444443322 12222111123567899999
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCcc
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKL 750 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L 750 (831)
.+|...+-... ...++.+|+.|+|+++ ++..+|. +.+++.|+.|+|+| +.++.++. ....++.|
T Consensus 367 anN~Ltd~c~p----~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~--------tva~~~~L 432 (1081)
T KOG0618|consen 367 ANNHLTDSCFP----VLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPD--------TVANLGRL 432 (1081)
T ss_pred hcCcccccchh----hhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhH--------HHHhhhhh
Confidence 98876652122 2335899999999997 7887875 67899999999999 67898886 77889999
Q ss_pred ceecccccccccccCCCCCCCCCccEEeecCCCCCCC--CCCCCccccccceEEe
Q 003317 751 EYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQK--LPLDSSSAKDRKIVIR 803 (831)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~--lp~~~~~~~l~~~~i~ 803 (831)
++|...+ +.+..+| +...+|+|+.+++ +|++|+. +|......+|+.+.+.
T Consensus 433 ~tL~ahs-N~l~~fP-e~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 433 HTLRAHS-NQLLSFP-ELAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HHHhhcC-Cceeech-hhhhcCcceEEec-ccchhhhhhhhhhCCCcccceeecc
Confidence 9999887 4788888 8888999999999 6788876 5555544578888887
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=2.7e-09 Score=111.47 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
...+++.|+|++|+||||+++.+++... . ..+ ..+|+ +....+..+++..++..++.+.. ..+.......+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~ 112 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELE 112 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHH
Confidence 4566899999999999999999998864 1 111 23343 33345778899999999887542 233333334444
Q ss_pred HHH-----cCCcEEEEEcCCCCcc--cccccccCC---CCCCCCcEEEEEcCChhHHhhcc----------CCceEEcCC
Q 003317 252 RVL-----SKKKFVLLLDDMWKRV--DLTQLGVPL---PSPTTASKVVFTTRFVEVCGAMK----------AHEYFKVEC 311 (831)
Q Consensus 252 ~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l---~~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~ 311 (831)
+.+ .+++.++|+||++... .++.+.... ........|++|.... ....+. ....+.+++
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 333 6788999999998753 333332111 1112223445555432 211111 134678999
Q ss_pred CChHHHHHHHHHHhhhcccCCC-CChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 312 LAHEKAWILFQEHVERQTLESH-PDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 312 L~~~e~~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
++.+|..+++...+........ .-..+..+.|++.++|.|..|+.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999888764331112 2335788999999999999999988876
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=3.1e-11 Score=139.25 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=136.0
Q ss_pred ceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 516 GVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
+-..|+++++.+..+|... .++|+.|++.+ ++.+|. .+++|++|++++| .++.+|.. ..+|++|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc----ccccceeeccCC
Confidence 3557899999999998742 35899999987 777875 3589999999999 78999862 468999999999
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
.+.. .+..+ ..|..|++..+.+..++. ..++|+.|+++++. ...++. + ..+|+.|.++
T Consensus 273 ~L~~-----Lp~lp------~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~-L~~Lp~--l--p~~L~~L~Ls 330 (788)
T PRK15387 273 PLTH-----LPALP------SGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQ-LASLPA--L--PSELCKLWAY 330 (788)
T ss_pred chhh-----hhhch------hhcCEEECcCCccccccc------cccccceeECCCCc-cccCCC--C--cccccccccc
Confidence 8766 22222 345566776665544332 23478888888764 222221 1 1245555555
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCccc------------------ccCCCceEEEecccCccccccC
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLA------------------LAPNVRNIGVSTCANMEEIISP 735 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~------------------~l~~L~~L~L~~c~~l~~l~~~ 735 (831)
+|....++. .+.+|+.|+|++| .++.+|.+. ..++|+.|+++++ .+..++.
T Consensus 331 ~N~L~~LP~--------lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~- 399 (788)
T PRK15387 331 NNQLTSLPT--------LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPV- 399 (788)
T ss_pred cCccccccc--------cccccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecCC-cccCCCC-
Confidence 544332210 0234445555443 333333210 1235566666553 2433322
Q ss_pred CccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEe
Q 003317 736 GKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIR 803 (831)
Q Consensus 736 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~ 803 (831)
..++|+.|+++++ .+..+|. .+.+|+.|++++ ++++.+|.....+ .++.+.+.
T Consensus 400 ----------l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 400 ----------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred ----------cccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence 1356777777774 4666652 234677777766 4577777654332 45555555
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=2.1e-08 Score=109.91 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=170.8
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCC-CC-CEEEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD-DF-DVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F-~~~~wv~~s~~~~~~~~~~~ 226 (831)
+.++||++++++|..+|.. .....+.|+|++|+|||++++.+++...+.... .. -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998853 355789999999999999999999876411111 11 24577888777778899999
Q ss_pred HHHHhC---CCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc-c----ccccccCC-CCCC--CCcEEEEEcC
Q 003317 227 IWKKIG---LCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV-D----LTQLGVPL-PSPT--TASKVVFTTR 293 (831)
Q Consensus 227 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~ilvTtR 293 (831)
|+.++. ...+ ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999983 2211 123345566666766663 567899999997651 1 11111110 1111 2233444444
Q ss_pred ChhHHhhcc-------CCceEEcCCCChHHHHHHHHHHhhhc--ccCCCCChHHHHHHHHHHhCCCchHH-HHHHHHh--
Q 003317 294 FVEVCGAMK-------AHEYFKVECLAHEKAWILFQEHVERQ--TLESHPDIPELAETVTKECGGLPLAL-ITIGRAM-- 361 (831)
Q Consensus 294 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~I~~~c~GlPlai-~~~~~~l-- 361 (831)
.......+. ....+.+.+++.++..+++..++... .....++..+....++..+.|.|..+ .++-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 332211111 12468899999999999999887521 11122333345556677777888544 3322211
Q ss_pred --ccC---CChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcC--CCCccccHHHHHHHH--H
Q 003317 362 --ACK---KQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLF--PEDYKIHKMSLIDYW--I 432 (831)
Q Consensus 362 --~~~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~W--~ 432 (831)
..+ -+.+..+.+.+.+. .....-++..||. +.+..+..++.. ..+..+....+...+ +
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 111 23334444433321 1223345678887 555444433311 134456666666633 2
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhccccccc
Q 003317 433 SEKILDNNDRSRAINEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 433 aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 465 (831)
++.+ .. .+........++.+|...|++...
T Consensus 321 ~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 10 123346667789999999998764
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=7.4e-13 Score=118.74 Aligned_cols=159 Identities=24% Similarity=0.314 Sum_probs=111.1
Q ss_pred ccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
.+-.+.++.+|.|++|.+..+|+. ..+.+|++|++++ ++++|.+|+.|++||+|+++-| .+..+|.+ ++.++-|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhh
Confidence 555667888999999999888877 7889999999987 8889999999999999999988 67888987 89999999
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCC
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKN 666 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 666 (831)
.||+..|.... ...++++-.++. |+.|+++++. ...++ ..++++++
T Consensus 106 vldltynnl~e------~~lpgnff~m~t--------------------------lralyl~dnd-fe~lp-~dvg~lt~ 151 (264)
T KOG0617|consen 106 VLDLTYNNLNE------NSLPGNFFYMTT--------------------------LRALYLGDND-FEILP-PDVGKLTN 151 (264)
T ss_pred hhhcccccccc------ccCCcchhHHHH--------------------------HHHHHhcCCC-cccCC-hhhhhhcc
Confidence 99998876654 122333333333 3334444332 12222 25566777
Q ss_pred cceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC
Q 003317 667 LHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT 710 (831)
Q Consensus 667 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 710 (831)
|+.|.+..|..++++. .++. +..|+.|++.++ +++.+|
T Consensus 152 lqil~lrdndll~lpk-eig~----lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 152 LQILSLRDNDLLSLPK-EIGD----LTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred eeEEeeccCchhhCcH-HHHH----HHHHHHHhcccc-eeeecC
Confidence 7777777777666533 2332 677788888776 555554
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.15 E-value=1.9e-10 Score=117.61 Aligned_cols=194 Identities=21% Similarity=0.229 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH-------
Q 003317 155 TVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI------- 227 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i------- 227 (831)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~---~~~~-~~~y~~~~~~~~-~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK---EKGY-KVVYIDFLEESN-ESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT-----EE-CCCHHCCTTBSH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh---hcCC-cEEEEecccchh-hhHHHHHHHHHHHH
Confidence 689999999999999877789999999999999999999999864 1111 344444434332 2222222
Q ss_pred ---HHHhCC--CCCC------CCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc-ccc-------cc---ccCCCCCC
Q 003317 228 ---WKKIGL--CDNS------WRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV-DLT-------QL---GVPLPSPT 283 (831)
Q Consensus 228 ---~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~l---~~~l~~~~ 283 (831)
...++. +... ............+.+.+. +++++||+||+.... ... .+ ........
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 111211 1000 011122233334444443 456999999996554 111 11 11122233
Q ss_pred CCcEEEEEcCChhHHhh--------ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHH
Q 003317 284 TASKVVFTTRFVEVCGA--------MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALI 355 (831)
Q Consensus 284 ~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 355 (831)
+.+ ++++..+..+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|.
T Consensus 156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred Cce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 334 4444444444332 2233459999999999999999876543 111 2235567999999999998876
Q ss_pred H
Q 003317 356 T 356 (831)
Q Consensus 356 ~ 356 (831)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=6.7e-11 Score=137.41 Aligned_cols=239 Identities=18% Similarity=0.199 Sum_probs=168.0
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
++...|+++++++..+|.. -.++|+.|+|++ +..+|..+. .+|++|++++| .++.+|.. +. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChh-hh--ccccEEECcC
Confidence 3456788888888888864 236899999998 888998765 59999999999 68999975 43 4799999999
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+..+ +..+. .+|+.|+++.+.+..++. .+..+|+.|+++++. ...++. .+ .++|+.|++
T Consensus 251 N~L~~L--------P~~l~--s~L~~L~Ls~N~L~~LP~-----~l~~sL~~L~Ls~N~-Lt~LP~-~l--p~sL~~L~L 311 (754)
T PRK15370 251 NRITEL--------PERLP--SALQSLDLFHNKISCLPE-----NLPEELRYLSVYDNS-IRTLPA-HL--PSGITHLNV 311 (754)
T ss_pred CccCcC--------ChhHh--CCCCEEECcCCccCcccc-----ccCCCCcEEECCCCc-cccCcc-cc--hhhHHHHHh
Confidence 988762 22332 467888888666554332 123579999998875 333331 12 247899999
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
++|....++. .. +++|+.|++++| .++.+|.- -.++|+.|++++|+ +..+|. .+ .++|+.
T Consensus 312 s~N~Lt~LP~-~l------~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~--------~l--p~~L~~ 371 (754)
T PRK15370 312 QSNSLTALPE-TL------PPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPE--------TL--PPTITT 371 (754)
T ss_pred cCCccccCCc-cc------cccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCCh--------hh--cCCcCE
Confidence 9887654422 22 478999999998 46666631 23799999999964 565543 22 368999
Q ss_pred ecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-----cccceEEe
Q 003317 753 LVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-----KDRKIVIR 803 (831)
Q Consensus 753 L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-----~l~~~~i~ 803 (831)
|+|++| ++..+|... .++|+.|++++| +|..+|..+.+. .+..+.+.
T Consensus 372 LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 372 LDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred EECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 999996 677777443 247999999884 788888754321 34455555
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=6.1e-09 Score=110.91 Aligned_cols=273 Identities=15% Similarity=0.087 Sum_probs=153.9
Q ss_pred CCcccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
..|+|+++.++++..++.. .....+.++|++|+|||+||+.+++... ..+. .+..+....... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----~~~~---~~~~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----VNLK---ITSGPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CCEE---EeccchhcCchh-HHHH
Confidence 4689999999999888852 3456788999999999999999999864 2221 122211112222 2233
Q ss_pred HHHhCCCC----CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhhcc-
Q 003317 228 WKKIGLCD----NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGAMK- 302 (831)
Q Consensus 228 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 302 (831)
+..++... ++.+.-+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.....
T Consensus 76 l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 33333211 0000011 1233456666777777778887655544332 122 2456667787654432211
Q ss_pred -CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhccc
Q 003317 303 -AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRRSA 381 (831)
Q Consensus 303 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 381 (831)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |..+. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 1346789999999999999988875432 2235667899999999997665554432 11100 000000
Q ss_pred CCCCCchhhhhHHhhccCCCCchhHHHHHH-HHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH-HHHhc
Q 003317 382 SEFPGMDEVYPRLKFSYDSLPGEKIRSCFL-YCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIG-VVLHS 459 (831)
Q Consensus 382 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~-~L~~~ 459 (831)
............+...|..++. +.+..+. ....++.+ .+....+.... | .....++..++ .|++.
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHc
Confidence 0000001233335667888887 5555554 55666543 44444443322 1 12234445567 59999
Q ss_pred cccccc
Q 003317 460 CLLEEA 465 (831)
Q Consensus 460 ~ll~~~ 465 (831)
+|+...
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999754
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=5.9e-09 Score=116.86 Aligned_cols=301 Identities=16% Similarity=0.132 Sum_probs=191.9
Q ss_pred ccccCCCCCcccchHHHHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHH
Q 003317 146 AVEERPIEPTVGLESTLDKVWSCLGEE-NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERI 223 (831)
Q Consensus 146 ~~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~ 223 (831)
.+.|.++...|-|.. +++.|... ..+.+.|..|+|.||||++.+.+... ..-..+.|.++... .++...
T Consensus 12 ~~~P~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~-----~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 12 LVRPVRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA-----ADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred cCCCCCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc-----CcccceeEeecCCccCCHHHH
Confidence 344444456677765 44555443 78999999999999999999998733 44567999998764 567788
Q ss_pred HHHHHHHhCCCCCC-----------CCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc---cccccccCCCCCCCCcE
Q 003317 224 QDDIWKKIGLCDNS-----------WRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV---DLTQLGVPLPSPTTASK 287 (831)
Q Consensus 224 ~~~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~ 287 (831)
..-++..++.-.+. ....+...+...+...+. .++..+||||..-.. --..+.-.+.....+-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 88888887632211 123344455556666554 468999999975321 12222222233445788
Q ss_pred EEEEcCChhH---HhhccCCceEE----cCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHH
Q 003317 288 VVFTTRFVEV---CGAMKAHEYFK----VECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRA 360 (831)
Q Consensus 288 ilvTtR~~~v---~~~~~~~~~~~----l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 360 (831)
+|||||+..- ++.--.....+ .-.|+.+|+-++|....+.. -...-.+.+....+|-+-|+..++=.
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999997643 22111112222 24688999999998765322 22344788999999999999999888
Q ss_pred hccCCChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCc
Q 003317 361 MACKKQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNN 440 (831)
Q Consensus 361 l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~ 440 (831)
++.+.+.+.-...+.-..+. -..-...--++.||+ ++|..++-||+++. +. ..|+..
T Consensus 237 ~~~~~~~~q~~~~LsG~~~~--------l~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f~-~eL~~~---------- 293 (894)
T COG2909 237 LRNNTSAEQSLRGLSGAASH--------LSDYLVEEVLDRLPP-ELRDFLLQTSVLSR---FN-DELCNA---------- 293 (894)
T ss_pred ccCCCcHHHHhhhccchHHH--------HHHHHHHHHHhcCCH-HHHHHHHHHHhHHH---hh-HHHHHH----------
Confidence 88444433322211100000 111223345679999 89999999999853 11 223221
Q ss_pred chhhHHHHHHHHHHHHHhccccccc---CCCeEEeCHHHHHHHHHHHhh
Q 003317 441 DRSRAINEGYYIIGVVLHSCLLEEA---GNDWVKMHDVIRDMALWIATE 486 (831)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~~~ 486 (831)
-..++.+...+++|.+++|+-.. ....|+.|.++.||-+..-..
T Consensus 294 --Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 294 --LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 22345566679999999997543 577999999999999876544
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=5.2e-09 Score=112.13 Aligned_cols=273 Identities=14% Similarity=0.079 Sum_probs=153.1
Q ss_pred CCcccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLG-----EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
..++|++..++.+..++. ....+.+.|+|++|+||||+|+.+++... ..+ .++..+. ......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----~~~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----VNI---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----CCe---EEEeccc-ccChHHHHHH
Confidence 568999999998877764 23467889999999999999999999864 222 1122111 1222233344
Q ss_pred HHHhCCCC----CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhhcc-
Q 003317 228 WKKIGLCD----NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGAMK- 302 (831)
Q Consensus 228 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 302 (831)
+..++... +..+..+ ....+.+...+.+.+..+|+|+..+..... ..++ +.+-|..||+...+.....
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHH
Confidence 44433211 0000000 112334555566666677777654432221 1111 2455667777544432211
Q ss_pred -CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhccc
Q 003317 303 -AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRRSA 381 (831)
Q Consensus 303 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 381 (831)
....+.+++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 13468999999999999999988765422 2346789999999999965555444332 121110 0000
Q ss_pred CCCCCchhhhhHHhhccCCCCchhHHHHHH-HHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH-HHHhc
Q 003317 382 SEFPGMDEVYPRLKFSYDSLPGEKIRSCFL-YCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIG-VVLHS 459 (831)
Q Consensus 382 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~-~L~~~ 459 (831)
............+...+..|++ ..+..+. ....|+.+ .+..+.+.... .. ..+.++..++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-----~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-----ERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-----CcchHHHHhhHHHHHc
Confidence 0000011344556677788887 5566664 66677765 45555543322 11 1223333355 78999
Q ss_pred cccccc
Q 003317 460 CLLEEA 465 (831)
Q Consensus 460 ~ll~~~ 465 (831)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 998754
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=3.7e-11 Score=122.02 Aligned_cols=262 Identities=19% Similarity=0.151 Sum_probs=158.9
Q ss_pred ceEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccC
Q 003317 493 NYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDH 567 (831)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~ 567 (831)
..+...+.++.++| ..-......|.|..|.|+.+|+. ..+++||.|||+. |+.+ |..+..|..|-.|-+.+
T Consensus 49 ~~VdCr~~GL~eVP----~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVP----ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred ceEEccCCCcccCc----ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 34455666777776 11225667889999999999986 8999999999998 6665 78899999998888888
Q ss_pred CCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceee
Q 003317 568 TTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYL 647 (831)
Q Consensus 568 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l 647 (831)
++.|+++|++++++|..|+.|.+.-|.+.-+ ....+..|+.|..|++..+.+..+.+- .+.. ...++.+.+
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~q~i~~~-tf~~-l~~i~tlhl 195 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKIQSICKG-TFQG-LAAIKTLHL 195 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhhhhhccc-cccc-hhccchHhh
Confidence 5589999999999999999999988877652 234556666666666665444332210 0000 112333333
Q ss_pred ccccCCceeee--------------c----------------cccCCCC---ccee---eecCC-CCCceeecccccCCC
Q 003317 648 NVWEHSNWLDV--------------L----------------SLGELKN---LHTL---HMQFP-FLDDLKFGCVRVGTH 690 (831)
Q Consensus 648 ~~~~~~~~~~~--------------~----------------~l~~l~~---L~~L---~l~~~-~~~~~~~~~~~~~~~ 690 (831)
..+.......+ . ++..-+. ++.+ -.+.| .....+...+ .
T Consensus 196 A~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf----~ 271 (498)
T KOG4237|consen 196 AQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF----K 271 (498)
T ss_pred hcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH----h
Confidence 32221000000 0 0000000 1111 00111 1111111222 2
Q ss_pred CCCCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCC-C
Q 003317 691 AFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYW-S 767 (831)
Q Consensus 691 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~ 767 (831)
.+++|++|+|+++ .++.+. |+..+..++.|+|.+ +.++.+... .+.++..|+.|+|.++ +++.+.+ .
T Consensus 272 ~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~-------~f~~ls~L~tL~L~~N-~it~~~~~a 341 (498)
T KOG4237|consen 272 KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSSG-------MFQGLSGLKTLSLYDN-QITTVAPGA 341 (498)
T ss_pred hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHHH-------hhhccccceeeeecCC-eeEEEeccc
Confidence 4788888888776 566553 577788888888877 456655332 5667788888888884 5555433 3
Q ss_pred CCCCCCccEEeecC
Q 003317 768 PLPFPQLMEIRVNG 781 (831)
Q Consensus 768 ~~~~p~L~~L~l~~ 781 (831)
...+.+|.+|++..
T Consensus 342 F~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLS 355 (498)
T ss_pred ccccceeeeeehcc
Confidence 44566777777753
No 30
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.4e-09 Score=102.87 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCC--CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDD--FDVVIWVVVSKDLKIE---RIQDDIWKKIGLCDNSWRSKSLEDKAVD 249 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 249 (831)
+++.|+|.+|+||||+++.++.......... +...+|++.+...... .+...+..+.... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---H
Confidence 5899999999999999999999876221111 5567777776654332 3444444333221 111111 2
Q ss_pred HHHHH-cCCcEEEEEcCCCCccc---------cccccc-CCCC-CCCCcEEEEEcCChhH---HhhccCCceEEcCCCCh
Q 003317 250 IFRVL-SKKKFVLLLDDMWKRVD---------LTQLGV-PLPS-PTTASKVVFTTRFVEV---CGAMKAHEYFKVECLAH 314 (831)
Q Consensus 250 l~~~l-~~k~~LlVlDdv~~~~~---------~~~l~~-~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~ 314 (831)
+.... ..+++++|+|++++... +..+.. .+.. ..++++++||+|.... .........+.+.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 22222 57899999999976432 112211 1222 2468999999998765 33344456899999999
Q ss_pred HHHHHHHHHHh
Q 003317 315 EKAWILFQEHV 325 (831)
Q Consensus 315 ~e~~~Lf~~~~ 325 (831)
++..+++.+.+
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.93 E-value=3e-11 Score=108.54 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=52.9
Q ss_pred cccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCcccccccc
Q 003317 528 RNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREV 605 (831)
Q Consensus 528 ~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 605 (831)
..+|...++.+...|.|+. +..+|+.|..|.+|+.|++++| ++.++|.. |++|++|+.|++.-|....
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~~-------- 93 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLNI-------- 93 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhhc--------
Confidence 3445556666666666665 5666777777777777777777 67777775 7777777777766554433
Q ss_pred chhhhcCCcCCCceeEe
Q 003317 606 LIDELVQLDHLNELSMS 622 (831)
Q Consensus 606 ~~~~L~~L~~L~~L~i~ 622 (831)
.+..++.++.|+.|+++
T Consensus 94 lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLT 110 (264)
T ss_pred CccccCCCchhhhhhcc
Confidence 33344444444444444
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=3.1e-10 Score=122.11 Aligned_cols=209 Identities=18% Similarity=0.111 Sum_probs=106.2
Q ss_pred cccceeEEEeccccccc-----cCCC-CCCCCcccccccC--c-------CccchhhhcCCcccEEeccCCCCCCCCChh
Q 003317 513 RWKGVRKISLMQNQIRN-----LPFT-PICPDLQTLFLKG--I-------NELPRELKALVNLKYLNLDHTTFLHPIPSP 577 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~~-----lp~~-~~~~~Lr~L~L~~--~-------~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~ 577 (831)
.+..++.+++.++.+.. ++.. ...++|+.|++++ + ..++..+..+++|++|++++|......+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG- 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-
Confidence 34557888888877632 2222 4566677777765 2 22345666777888888888743223333
Q ss_pred hhcCCcc---CcEeeeccccCCCccccccccchhhhcCC-cCCCceeEeecchh--HHHHHhhcccccccccceeecccc
Q 003317 578 LISSFSM---LLVLRMFNCKSSSMANVVREVLIDELVQL-DHLNELSMSLHSIR--ALERFLSFHKLKSCTGSLYLNVWE 651 (831)
Q Consensus 578 ~i~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~~~ 651 (831)
.+..+.+ |++|++++|.+... ..+.....+..+ ++|+.|++..+.+. ....+.........|+.|+++++.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~---~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDR---GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchH---HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3555554 88888888766530 001122344555 66777777655544 122222222222356666666554
Q ss_pred CCceeee----ccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC--Cccc-----ccCCCce
Q 003317 652 HSNWLDV----LSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL--TWLA-----LAPNVRN 720 (831)
Q Consensus 652 ~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~-----~l~~L~~ 720 (831)
- ..... ..+..+++|++|++++|.........+......+++|+.|++++|. ++.. ..+. ..+.|+.
T Consensus 177 l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 177 I-GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred C-chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceE
Confidence 2 11000 0223345666666666654432222111122235666666666653 3221 1111 1256666
Q ss_pred EEEeccc
Q 003317 721 IGVSTCA 727 (831)
Q Consensus 721 L~L~~c~ 727 (831)
|++++|.
T Consensus 255 L~l~~n~ 261 (319)
T cd00116 255 LSLSCND 261 (319)
T ss_pred EEccCCC
Confidence 6666653
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.2e-10 Score=116.97 Aligned_cols=205 Identities=20% Similarity=0.197 Sum_probs=139.5
Q ss_pred ccccceeEEEeccccccccCC---CCCCCCcccccccC-----cCccchhhhcCCcccEEeccCCCCCCCC-ChhhhcCC
Q 003317 512 ERWKGVRKISLMQNQIRNLPF---TPICPDLQTLFLKG-----INELPRELKALVNLKYLNLDHTTFLHPI-PSPLISSF 582 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~~lp~---~~~~~~Lr~L~L~~-----~~~lp~~i~~L~~Lr~L~L~~~~~l~~l-p~~~i~~L 582 (831)
+++++||.++|.++.+...+. ...|++++.|||+. +..+-..+..|++|+.|+|+.|. +... ....-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence 356889999999998887763 38999999999998 45566677899999999999994 3332 22122467
Q ss_pred ccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeecccc
Q 003317 583 SMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLG 662 (831)
Q Consensus 583 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~ 662 (831)
++|+.|.++.|.+.+ .....-+...++|..|.+..+........ .......|+.|+|+++.....-...-..
T Consensus 197 ~~lK~L~l~~CGls~------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW------KDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhheEEeccCCCCH------HHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccc
Confidence 899999999998875 23455667778888888776642211111 1122346888999887754333333456
Q ss_pred CCCCcceeeecCCCCCcee-ecc-cccCCCCCCCccEEEEEcCCC--CCCCCcccccCCCceEEEec
Q 003317 663 ELKNLHTLHMQFPFLDDLK-FGC-VRVGTHAFHSLHTVRIYYCSK--LRDLTWLALAPNVRNIGVST 725 (831)
Q Consensus 663 ~l~~L~~L~l~~~~~~~~~-~~~-~~~~~~~l~~L~~L~L~~c~~--l~~l~~l~~l~~L~~L~L~~ 725 (831)
.++.|+.|+++.|...++. ++. .......+++|++|++..++- +..+..+..+++|+.|.+..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 7888999999888776621 111 111234689999999988743 33344455678888887654
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=3.5e-07 Score=94.55 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=129.7
Q ss_pred CCcccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTL---DKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
+.+||.+.-+ .-|.+.+..+.+.....||++|+||||||+.+..... ..| ..+|...+-.+-++++++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~----~~f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN----AAF-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC----Cce-----EEeccccccHHHHHHHHH
Confidence 4456665544 2344566677899999999999999999999998764 444 344444333333333333
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCC--cccccccccCCCCCCCCcEEEE--EcCChhH---Hhhcc
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWK--RVDLTQLGVPLPSPTTASKVVF--TTRFVEV---CGAMK 302 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~ 302 (831)
... .....+++.+|++|.|.. ..+.+.+ +|.-.+|.-|+| ||.|+.- ....+
T Consensus 95 ~a~------------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 95 EAR------------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHH------------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 211 122348999999999963 3444444 455567888887 7777643 22234
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhcccCC---CCCh-HHHHHHHHHHhCCCchHHHHHH---HHhccCC---ChhHHHH
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQTLES---HPDI-PELAETVTKECGGLPLALITIG---RAMACKK---QPEDWKY 372 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~---~~~~-~~~~~~I~~~c~GlPlai~~~~---~~l~~~~---~~~~w~~ 372 (831)
...++.+++|+.++-.+++.+.+....... ...+ ++.-.-|+..++|--.+.-... ..+.... ..+.-+.
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 567999999999999999998543322111 1122 4466778899998765432222 2222111 2233333
Q ss_pred HHHHHhcccCCCCCch-hhhhHHhhccCCCCc
Q 003317 373 AIQVLRRSASEFPGMD-EVYPRLKFSYDSLPG 403 (831)
Q Consensus 373 ~l~~l~~~~~~~~~~~-~~~~~l~~sy~~L~~ 403 (831)
.+..-........+.. ++..++.-|...=.+
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 3222111111111112 777888888877655
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=3.9e-08 Score=99.27 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..+.+.|+|++|+|||+|++.+++... .....+.|+.+.... .... .+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~----~~~~~~~y~~~~~~~---~~~~-----------------------~~~~ 87 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL----LNQRTAIYIPLSKSQ---YFSP-----------------------AVLE 87 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH----HcCCCeEEeeHHHhh---hhhH-----------------------HHHh
Confidence 456789999999999999999999975 223345666653210 0000 1111
Q ss_pred HHcCCcEEEEEcCCCCc---ccccc-cccCCCC-CCCCcEEEE-EcCC---------hhHHhhccCCceEEcCCCChHHH
Q 003317 253 VLSKKKFVLLLDDMWKR---VDLTQ-LGVPLPS-PTTASKVVF-TTRF---------VEVCGAMKAHEYFKVECLAHEKA 317 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~ 317 (831)
.++ +.-+||+||+|.. ..|+. +...+.. ...|+.+|| |++. +++...+.....++++++++++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 122 2348999999863 34542 2222221 123555554 4543 35566666677899999999999
Q ss_pred HHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 318 WILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 318 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
++++.+.+...... --+++..-|++.+.|..-++..+-
T Consensus 167 ~~iL~~~a~~~~l~---l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 167 IIVLQRNAYQRGIE---LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 99999998754422 225677888888888776654433
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.74 E-value=1.3e-06 Score=99.29 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=121.5
Q ss_pred CCcccchHHHHHHHHHhcC----C-CceEEEEEcCCCCcHHHHHHHHHHhhhhcc-CCCCC--EEEEEEeCCCCCHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----E-NVGIIGLYGMGGVGKTTLLTQINNKFLDSR-KDDFD--VVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F~--~~~wv~~s~~~~~~~~~ 224 (831)
+.+.|||+++++|...|.. . ...++.|+|++|+|||+.++.|.+...+.. ..... .+++|.+....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4568999999999988753 2 335788999999999999999998764221 12222 36777777777888999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc---CCcEEEEEcCCCCcc--cccccccCCC-CCCCCcEEEE--EcCChh
Q 003317 225 DDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS---KKKFVLLLDDMWKRV--DLTQLGVPLP-SPTTASKVVF--TTRFVE 296 (831)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~ilv--TtR~~~ 296 (831)
..|..++....+. ......+....+...+. +...+||||+|+... .-+.+...+. ....+++|+| +|.+.+
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 9999988543221 22334445555555542 234599999997432 1111111111 1123455544 333222
Q ss_pred H--------HhhccCCceEEcCCCChHHHHHHHHHHhhhcc-cCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 297 V--------CGAMKAHEYFKVECLAHEKAWILFQEHVERQT-LESHPDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 297 v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
. ...++ ...+...+++.++-.+++..++.... .-.+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 12222 23467799999999999999986432 11122233334444433344555665554444
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=2.2e-07 Score=110.59 Aligned_cols=309 Identities=15% Similarity=0.196 Sum_probs=177.8
Q ss_pred CcccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC---HHHHHHHH
Q 003317 154 PTVGLESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK---IERIQDDI 227 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~---~~~~~~~i 227 (831)
+++||+.+++.|...+.. +...++.+.|.+|||||+++++|....... ++.|-...+-....+.. ..+..+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~-~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ-RGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc-ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 368999999999988754 567799999999999999999999987511 12221111112222222 22333444
Q ss_pred HHHh-------------------CCCCCC--------------------CCCCCHHHHH-----HHHHHHH-cCCcEEEE
Q 003317 228 WKKI-------------------GLCDNS--------------------WRSKSLEDKA-----VDIFRVL-SKKKFVLL 262 (831)
Q Consensus 228 ~~~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~k~~LlV 262 (831)
+.++ +..+.. ........+. ..+..+. +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 4433 111100 0011111111 2223333 35699999
Q ss_pred EcCC-CCcccccccccCCCCCCC-----CcEEE--EEcCCh--hHHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCC
Q 003317 263 LDDM-WKRVDLTQLGVPLPSPTT-----ASKVV--FTTRFV--EVCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLES 332 (831)
Q Consensus 263 lDdv-~~~~~~~~l~~~l~~~~~-----gs~il--vTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~ 332 (831)
+||+ |-+..-..+...+....+ ...|. .|.+.. .+.....+...+.+.||+..+...+.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 9999 544321111111111000 11232 333322 2222233456899999999999999988876532
Q ss_pred CCChHHHHHHHHHHhCCCchHHHHHHHHhccC------CChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhH
Q 003317 333 HPDIPELAETVTKECGGLPLALITIGRAMACK------KQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKI 406 (831)
Q Consensus 333 ~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 406 (831)
....+....|+++.+|+|+.+..+-..+... .+...|..-...+.. .+..+.+...+..-.+.||. ..
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhHHHHHHHHHHHhcCCH-HH
Confidence 3345678999999999999999998888763 344556543322221 12223556678889999998 89
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHhccccccc-------CCCeE---EeCHHH
Q 003317 407 RSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIGVVLHSCLLEEA-------GNDWV---KMHDVI 476 (831)
Q Consensus 407 k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~~~~~---~mHdlv 476 (831)
|..+-..|++... |+...|...|- .....++...++.|....++-.. ..... ..||+|
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999998654 44555554441 12334455545555555544311 11222 568888
Q ss_pred HHHHHHHH
Q 003317 477 RDMALWIA 484 (831)
Q Consensus 477 ~d~a~~~~ 484 (831)
++.|-..-
T Consensus 379 qqaaY~~i 386 (849)
T COG3899 379 QQAAYNLI 386 (849)
T ss_pred HHHHhccC
Confidence 88775443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=1.7e-07 Score=103.59 Aligned_cols=175 Identities=16% Similarity=0.154 Sum_probs=107.6
Q ss_pred CCcccchHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDK---VWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
+.+||++..+.. +.+++..+..+.+.++|++|+||||+|+.+++... ..| +.++......+-.+.++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~----~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD----APF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC----CCE-----EEEecccccHHHHHHHHH
Confidence 568999888666 77778777778899999999999999999998754 333 222222111111222222
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHH-HcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEE--EcCChh--H-Hhhc
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRV-LSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVF--TTRFVE--V-CGAM 301 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv--TtR~~~--v-~~~~ 301 (831)
. .... ..+++.+|++|+++... ..+.+...+. .|..++| ||.+.. + ....
T Consensus 83 ~-------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 83 E-------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred H-------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 2 1111 24578899999998642 3333333222 2454544 344432 1 1112
Q ss_pred cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 302 KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 302 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
.....+.+.+++.++.+.++.+.+........+-..+....|++.|+|.+..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 233678999999999999998876432111012335667889999999987664443
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=1e-09 Score=111.75 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=137.1
Q ss_pred CceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC---cCccch-hhhcCCcccEEeccCCCCCCCC
Q 003317 501 GLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG---INELPR-ELKALVNLKYLNLDHTTFLHPI 574 (831)
Q Consensus 501 ~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~---~~~lp~-~i~~L~~Lr~L~L~~~~~l~~l 574 (831)
+.+.+| ...++.++++|+|+|++|+|..|.+. ..++.|.+|.+-+ |+.+|. .+++|..|+-|.+.-| .+..+
T Consensus 78 ~I~~iP-~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Ci 155 (498)
T KOG4237|consen 78 QISSIP-PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCI 155 (498)
T ss_pred CcccCC-hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcch
Confidence 344454 23567889999999999999998665 6777777666655 777874 4677888888888777 67777
Q ss_pred ChhhhcCCccCcEeeeccccCCCccccccccchhhhc----------------CCcCCCc----eeEeecchh-----HH
Q 003317 575 PSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELV----------------QLDHLNE----LSMSLHSIR-----AL 629 (831)
Q Consensus 575 p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----------------~L~~L~~----L~i~~~~~~-----~l 629 (831)
+.+++..|++|..|.+..|.+..+.. ..+..+. +|++|.. +.+...+.. .+
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~----~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICK----GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhcc----ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 77777788888888877776554211 0111111 1111110 000000000 00
Q ss_pred -----HHHhhcccccccccce---eeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEE
Q 003317 630 -----ERFLSFHKLKSCTGSL---YLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIY 701 (831)
Q Consensus 630 -----~~l~~~~~l~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 701 (831)
..+..-... -.++.+ ..+.+.-....+...+.++++|++|++++|....+...|+.+ ...++.|.|.
T Consensus 232 ~~~Ri~q~~a~kf~-c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~----~a~l~eL~L~ 306 (498)
T KOG4237|consen 232 YYKRINQEDARKFL-CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG----AAELQELYLT 306 (498)
T ss_pred HHHHhcccchhhhh-hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc----hhhhhhhhcC
Confidence 000000000 001111 111121122222235778899999999999887776777764 7788888887
Q ss_pred cCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccc
Q 003317 702 YCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLE 756 (831)
Q Consensus 702 ~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~ 756 (831)
.+ ++..+.. +..+..|+.|+|.+ +.++.+... .+...-+|.+|++-
T Consensus 307 ~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~-------aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 307 RN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPG-------AFQTLFSLSTLNLL 354 (498)
T ss_pred cc-hHHHHHHHhhhccccceeeeecC-CeeEEEecc-------cccccceeeeeehc
Confidence 76 4555442 55778888888888 456665432 34445566666654
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=1.7e-09 Score=111.06 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=157.1
Q ss_pred ceeEEEeccccccccCCC----CCCCCcccccccCcCccch-----hhhcCCcccEEeccCCCCCCCCChh-hhcCCccC
Q 003317 516 GVRKISLMQNQIRNLPFT----PICPDLQTLFLKGINELPR-----ELKALVNLKYLNLDHTTFLHPIPSP-LISSFSML 585 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~----~~~~~Lr~L~L~~~~~lp~-----~i~~L~~Lr~L~L~~~~~l~~lp~~-~i~~L~~L 585 (831)
.++.|++.++.-....+. .+|||+..|.+.+...+.+ .-..+++|++|+|..|..++..--. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 356667766543322222 6888888888888544432 2356889999999998666654322 23567889
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeecccc-CC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLG-EL 664 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~-~l 664 (831)
++|+++.|.--. ....-.-.+..+.|+.+....+....++.+........-+-.+++..|...++.....+. .+
T Consensus 219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 999998875332 111111122233333332222222233333333222223444555555544444332222 45
Q ss_pred CCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCCC--ccc-ccCCCceEEEecccCccccccCCcccc
Q 003317 665 KNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLA-LAPNVRNIGVSTCANMEEIISPGKISQ 740 (831)
Q Consensus 665 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~-~l~~L~~L~L~~c~~l~~l~~~~~~~~ 740 (831)
..|+.|..++|...+ .....++. ..++|+.|.+++|..+++.- .++ +.+.|+.+++.+|..+.+-.-
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~---~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL------ 364 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQ---HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL------ 364 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhc---CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH------
Confidence 677888888777655 33333332 46788888888887766542 233 567888888887765554310
Q ss_pred ccCCCCCCccceeccccccccccc-----CCCCCCCCCccEEeecCCCCCCCCCCCC--ccccccceEEeccchh
Q 003317 741 VQNLDPFAKLEYLVLENLMNLKSI-----YWSPLPFPQLMEIRVNGCPILQKLPLDS--SSAKDRKIVIRAKQHS 808 (831)
Q Consensus 741 ~~~~~~~~~L~~L~L~~~~~l~~i-----~~~~~~~p~L~~L~l~~C~~L~~lp~~~--~~~~l~~~~i~~~~~~ 808 (831)
.+.-.++|.|+.|.+++|...++- ......+..|+.+++.+||.+++--+.. ....++.+..++|...
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 003346788888888877655443 2223457778888888888876533321 2225676777766443
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=2.5e-09 Score=114.96 Aligned_cols=238 Identities=18% Similarity=0.133 Sum_probs=136.6
Q ss_pred CCCCCcccccccCc-------CccchhhhcCCcccEEeccCCCCCCC-------CChhhhcCCccCcEeeeccccCCCcc
Q 003317 534 PICPDLQTLFLKGI-------NELPRELKALVNLKYLNLDHTTFLHP-------IPSPLISSFSMLLVLRMFNCKSSSMA 599 (831)
Q Consensus 534 ~~~~~Lr~L~L~~~-------~~lp~~i~~L~~Lr~L~L~~~~~l~~-------lp~~~i~~L~~L~~L~l~~~~~~~~~ 599 (831)
..+++|+.|++++. ..++..+...++|++|+++++. +.. ++. .+.++++|+.|++++|.+...
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~- 96 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPD- 96 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHH-HHHhcCceeEEEccCCCCChh-
Confidence 45666889998872 3466777788889999999883 442 223 367788999999998877531
Q ss_pred ccccccchhhhcCCcCCCceeEeecchhH--HHHHhhc-ccccccccceeeccccCCcee--ee-ccccCCCCcceeeec
Q 003317 600 NVVREVLIDELVQLDHLNELSMSLHSIRA--LERFLSF-HKLKSCTGSLYLNVWEHSNWL--DV-LSLGELKNLHTLHMQ 673 (831)
Q Consensus 600 ~~~~~~~~~~L~~L~~L~~L~i~~~~~~~--l~~l~~~-~~l~~~L~~L~l~~~~~~~~~--~~-~~l~~l~~L~~L~l~ 673 (831)
.+..+..+..-++|+.|+++.+.+.. ...+... .....+|+.|++++|.-.... .. ..+..+++|++|+++
T Consensus 97 ---~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 97 ---GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ---HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 11122222221558888887665432 2222111 122257888888887632110 00 134556789999998
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC------CcccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL------TWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
+|.........+......+++|+.|++++|. +... ..+..+++|+.|++++|. +.+......... .....
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~--~~~~~ 249 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASA--LLSPN 249 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHH--HhccC
Confidence 8865531111111011125689999998874 3321 124567889999998865 332110000000 11134
Q ss_pred Cccceeccccccccc-----ccCCCCCCCCCccEEeecCC
Q 003317 748 AKLEYLVLENLMNLK-----SIYWSPLPFPQLMEIRVNGC 782 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~-----~i~~~~~~~p~L~~L~l~~C 782 (831)
+.|++|++++| .++ .+......+++|++++++++
T Consensus 250 ~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 78899998887 332 12212334578888888774
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.67 E-value=2.9e-07 Score=93.45 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=102.5
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 003317 158 LESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS 237 (831)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 237 (831)
.+..++.+.+++.......|.|+|++|+|||++|+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~----~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE----ERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH----hcCCcEEEEeHHHHHH------hH----------
Confidence 455677777776566778999999999999999999998864 2333456665433211 00
Q ss_pred CCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---ccc-ccccCCCC-CCCCcEEEEEcCChh---------HHhhccC
Q 003317 238 WRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---DLT-QLGVPLPS-PTTASKVVFTTRFVE---------VCGAMKA 303 (831)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~ 303 (831)
..+...+.+ .-+||+||++... .|. .+...+.. ...+.++|+||+... +...+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 2389999997543 222 22222211 123457888887432 2223333
Q ss_pred CceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 304 HEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 304 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
...+++.+++.++...++.+.+..... +--.+..+.|++.+.|.|..+..+.
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 467899999999999999876543321 2234567888888899887765543
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=2.8e-06 Score=95.92 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=136.3
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
..++|.+..++++.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~------~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG------WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CC-EEEEcccccccHH-HHHHHH
Confidence 4579999999999998853 2378999999999999999999999863 33 2333444433322 233333
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc------ccccccCCCCCCCCcEEEEEcCCh-hHHh--
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD------LTQLGVPLPSPTTASKVVFTTRFV-EVCG-- 299 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-- 299 (831)
....... .....++-+||+|+++.... +..+...+. ..+..||+|+.+. ....
T Consensus 86 ~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 86 GEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 3221110 00113677999999976422 333322222 1233455555432 2211
Q ss_pred hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCC---ChhHHHHHHHH
Q 003317 300 AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKK---QPEDWKYAIQV 376 (831)
Q Consensus 300 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~---~~~~w~~~l~~ 376 (831)
.-.....+.+.+++.++....+.+.+....... ..+....|++.++|..-.+......+.... +.+.-..+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~--- 221 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL--- 221 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---
Confidence 112346789999999999999888876544222 246789999999997765544333333321 22222111
Q ss_pred HhcccCCCCCchhhhhHHhhccC-CCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcc
Q 003317 377 LRRSASEFPGMDEVYPRLKFSYD-SLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNND 441 (831)
Q Consensus 377 l~~~~~~~~~~~~~~~~l~~sy~-~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~ 441 (831)
..... ..+++.++..-+. .-+. .....+..+ .++. ..+-.|+.|.+.....
T Consensus 222 ~~~d~-----~~~if~~l~~i~~~k~~~-~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~~ 273 (482)
T PRK04195 222 GRRDR-----EESIFDALDAVFKARNAD-QALEASYDV-------DEDP-DDLIEWIDENIPKEYD 273 (482)
T ss_pred hcCCC-----CCCHHHHHHHHHCCCCHH-HHHHHHHcc-------cCCH-HHHHHHHHhccccccC
Confidence 11110 1156666665544 2222 333322221 1222 3567899999987643
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6e-09 Score=107.76 Aligned_cols=210 Identities=17% Similarity=0.184 Sum_probs=109.0
Q ss_pred hcCCcccEEeccCCCCCCCCCh-hhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHh
Q 003317 555 KALVNLKYLNLDHTTFLHPIPS-PLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFL 633 (831)
Q Consensus 555 ~~L~~Lr~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~ 633 (831)
.++.+||...|.++ .+...+. +....|++++.||+++|-+..| .....-+..|++|+.|+++-+....... .
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-----~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW-----FPVLKIAEQLPSLENLNLSSNRLSNFIS-S 190 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH-----HHHHHHHHhcccchhcccccccccCCcc-c
Confidence 34555555555555 3443332 2345566666666666554442 1233444555555555555333211100 0
Q ss_pred hcccccccccceeeccccCCceeeec-cccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCC--CC
Q 003317 634 SFHKLKSCTGSLYLNVWEHSNWLDVL-SLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRD--LT 710 (831)
Q Consensus 634 ~~~~l~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~ 710 (831)
......++|+.|.|+.|.- +.-... .+..+|+|+.|.+.+|..... ... +...+..|+.|+|++++.+.. .+
T Consensus 191 ~~~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~--~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILI--KAT--STKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred cchhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccce--ecc--hhhhhhHHhhccccCCccccccccc
Confidence 0001234566677776652 222111 234567888888888753321 111 112367788888888754433 24
Q ss_pred cccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCC--CCCCCCCccEEee
Q 003317 711 WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYW--SPLPFPQLMEIRV 779 (831)
Q Consensus 711 ~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~--~~~~~p~L~~L~l 779 (831)
..+.||.|..|.++.|. +.++...+. +.......||+|++|++..+ +..+|+. ....+++|+.|.+
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~-~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDV-ESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCc-cchhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 56778888888888744 555432111 11113467888888888874 4444432 2334666666665
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=3.9e-07 Score=92.13 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=111.8
Q ss_pred CCcccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLD---KVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
.++||.+..+. -|.+++.++..+.+.+||++|+||||||+.+.+... .+- ..||..|....-..-++.|.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk----~~S--yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK----KHS--YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC----CCc--eEEEEEeccccchHHHHHHHH
Confidence 34566655443 244555667899999999999999999999998864 221 567777776544444455554
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCC--CcccccccccCCCCCCCCcEEEE--EcCChhH---Hhhcc
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMW--KRVDLTQLGVPLPSPTTASKVVF--TTRFVEV---CGAMK 302 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~ 302 (831)
+... ...+.++|.+|.+|.|. +..+.+.+ +|...+|..++| ||.+... +....
T Consensus 212 ~aq~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 212 QAQN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHh
Confidence 4321 12345789999999995 33444433 566678887776 7777653 23344
Q ss_pred CCceEEcCCCChHHHHHHHHHHhh---hccc--CCCCC-----hHHHHHHHHHHhCCCch
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVE---RQTL--ESHPD-----IPELAETVTKECGGLPL 352 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~--~~~~~-----~~~~~~~I~~~c~GlPl 352 (831)
...++.+++|..++-..++.+... .... ..-++ -..+.+-++..|.|-..
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 567899999999999999887432 1110 11122 12355666677777653
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=3.9e-08 Score=93.21 Aligned_cols=109 Identities=26% Similarity=0.262 Sum_probs=41.4
Q ss_pred cccccceeEEEeccccccccCCCC-CCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTP-ICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~-~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
..+..++|.|+|.+|.|..+.... .+.+|++|++++ +..++ .+..|++|+.|++++| .|+.++......+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 334467899999999998887664 688999999997 66664 4667899999999999 788887652346899999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
|++++|.+..+ ..+..|..+++|+.|++..+.+.
T Consensus 93 L~L~~N~I~~l------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDL------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SC------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCCh------HHhHHHHcCCCcceeeccCCccc
Confidence 99999988773 34667778888888888766554
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=4.2e-06 Score=94.82 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=111.9
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+++||.+..++.|.+++..+. .+.+.++|..|+||||+|+.+.+.... ...++ +..+......+.|...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC--e~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC--ETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC--ccCCC-------CCCCcccHHHHHHhcCC
Confidence 467999999999999998765 456689999999999999999887641 11110 00111111111111100
Q ss_pred CC---CCCCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHHh-h
Q 003317 232 GL---CDNSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVCG-A 300 (831)
Q Consensus 232 ~~---~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~ 300 (831)
.. .-+.......++....+... ..++.-++|||++.... .+..+...+-......++|+||.+. .+.. .
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 00 00000111222222222211 12445589999997653 3555544343333456666666654 3322 2
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP-LALITIGR 359 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~ 359 (831)
.+....|++..++.++..+.+.+.+..+... -..+..+.|++.++|.. -|+..+-.
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2334689999999999999999887654422 23566788999999865 45555433
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=3.4e-05 Score=89.01 Aligned_cols=203 Identities=16% Similarity=0.069 Sum_probs=120.1
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC---CEEEEEEeCCC---CCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF---DVVIWVVVSKD---LKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~ 226 (831)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++... ....+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~--~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK--KLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh--hccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 56799999999988888666677899999999999999999988764 22222 12345544321 122222111
Q ss_pred ---------------HHHHhCCCCC----------C-----CCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccc
Q 003317 227 ---------------IWKKIGLCDN----------S-----WRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQ 274 (831)
Q Consensus 227 ---------------i~~~l~~~~~----------~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 274 (831)
.+...+.... . ....-....+..+...++++++.++-|+.|.. ..|..
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1122221100 0 00111233567888888889999997777653 34666
Q ss_pred cccCCCCCCCCcEEEE--EcCChhH-Hhhc-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC
Q 003317 275 LGVPLPSPTTASKVVF--TTRFVEV-CGAM-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL 350 (831)
Q Consensus 275 l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 350 (831)
+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++.+.+....... -.++.+.|.+.+..-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~g 388 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcH
Confidence 6655555555555555 6664432 1111 1234678999999999999999876432111 134455555555444
Q ss_pred chHHHHHHHH
Q 003317 351 PLALITIGRA 360 (831)
Q Consensus 351 Plai~~~~~~ 360 (831)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5566555444
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.3e-06 Score=89.04 Aligned_cols=177 Identities=13% Similarity=0.193 Sum_probs=114.2
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhc--cCCCCCEEEEEEe-CCCCCHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDS--RKDDFDVVIWVVV-SKDLKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~~F~~~~wv~~-s~~~~~~~~~~~i~ 228 (831)
.+++|.+..++.+.+.+..+. .+.+.++|+.|+||||+|+.+++..-.. ...|.|...|... +....+++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 457899999999999997765 4577899999999999999999875311 2356676666542 33333333 33333
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCC--CcccccccccCCCCCCCCcEEEEEcCChhHH-h-hccCC
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMW--KRVDLTQLGVPLPSPTTASKVVFTTRFVEVC-G-AMKAH 304 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~~~~~ 304 (831)
+.+.... ..+++=++|+|++. +...+..+...+.....++.+|++|.+.+.. . -....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 4332111 11344456666654 4456777766666555678888887655422 1 12234
Q ss_pred ceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHH
Q 003317 305 EYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALI 355 (831)
Q Consensus 305 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 355 (831)
..+.+.++++++....+.+.+.+. ..+.++.++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 689999999999988776554211 13446788999999987554
No 50
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.46 E-value=3.2e-06 Score=91.53 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=109.3
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-EEEEEEeCCCCCH-HHHHH---HH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-VVIWVVVSKDLKI-ERIQD---DI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~---~i 227 (831)
+.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ..... ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY---GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc---CcccccceEEechhhhhhcchhhhhcCcch
Confidence 56799999999999999877777889999999999999999998864 12222 2344443321100 00000 00
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHH-HHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHH
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDI-FRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVC 298 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l-~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 298 (831)
....+.. .. ...........+ .... .+.+-+||+||+.... ....+...+......+++|+||.+. .+.
T Consensus 92 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 92 AHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 0000000 00 000111111111 1111 1344589999996542 1222322222223446677776543 222
Q ss_pred hhc-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 299 GAM-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 299 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
... .....+.+.+++.++...++.+.+...... --.+....+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 211 223578899999999999998877654322 2256788899999887655433
No 51
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=4.3e-07 Score=82.69 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
.+++.|.|+.|+||||++++++++.. ....+++++..+....... ..+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLA------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHh
Confidence 46899999999999999999998752 3345666655443221100 000 22333333
Q ss_pred HcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhhc------cCCceEEcCCCChHHH
Q 003317 254 LSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGAM------KAHEYFKVECLAHEKA 317 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~e~ 317 (831)
...++.+++||++....+|......+.+..+..+|++|+.+......- +....+++.||+..|.
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 344788999999998888888766666655678999999977665321 1234678999998773
No 52
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=4.2e-06 Score=84.73 Aligned_cols=168 Identities=11% Similarity=0.080 Sum_probs=99.7
Q ss_pred CCcccch-HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLE-STLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.|++.. ..+..+.....+.....+.|+|.+|+|||+|++.+++... .....+.+++..+ ....+..
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~----~~~~~~~y~~~~~------~~~~~~~-- 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE----QAGRSSAYLPLQA------AAGRLRD-- 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEEeHHH------hhhhHHH--
Confidence 4455433 3344443433344456799999999999999999999875 2233556665322 1111110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---cccc-cccCCCC-CCCCcEEEEEcCCh---------hH
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---DLTQ-LGVPLPS-PTTASKVVFTTRFV---------EV 297 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v 297 (831)
..+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++.. ++
T Consensus 87 ------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 87 ------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred ------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 11111 233589999996432 2322 2111111 12456799999842 22
Q ss_pred HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 298 CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 298 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
..++.....+++++++.++-..++.+++..... .--.+...-|++.+.|..-++
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 334444568999999999999999987765332 222566788888888766544
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.3e-06 Score=81.87 Aligned_cols=122 Identities=20% Similarity=0.130 Sum_probs=73.8
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 003317 156 VGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD 235 (831)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (831)
+|++..++.+...+.....+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF----RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh----cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47888899999988776778999999999999999999999874 222345666655443222211111000
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc-----ccccccccCCCC---CCCCcEEEEEcCCh
Q 003317 236 NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR-----VDLTQLGVPLPS---PTTASKVVFTTRFV 295 (831)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~ilvTtR~~ 295 (831)
............++.++|+||++.. ..+..+...+.. ...+..||+||...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223456789999999853 122222222211 13577888888754
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.9e-05 Score=84.65 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=129.3
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
+.+.+|+.+++++...|.. +...-+.|+|..|+|||+.++.+.+...+.. ...+ +++|++-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-ANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-ccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 4578999999999987743 3455599999999999999999999986221 1122 78999999999999999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcccc--cccccCCCC-CCCCcEEE--EEcCChhHHhhc
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRVDL--TQLGVPLPS-PTTASKVV--FTTRFVEVCGAM 301 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs~il--vTtR~~~v~~~~ 301 (831)
.+++... .......+....+.+.+. ++.+++|||++.....- +.+-..+.. ....++|+ ..+-+......+
T Consensus 95 ~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 9996211 145666777777777774 58899999999754322 111111111 11144443 344433332222
Q ss_pred c-------CCceEEcCCCChHHHHHHHHHHhhhc--ccCCCCChHHHHHHHHHHhCC-CchHHHHH
Q 003317 302 K-------AHEYFKVECLAHEKAWILFQEHVERQ--TLESHPDIPELAETVTKECGG-LPLALITI 357 (831)
Q Consensus 302 ~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~I~~~c~G-lPlai~~~ 357 (831)
. ....+..++-+.+|-.+.+..++... ....++..-+++..++..-+| .-.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 12347889999999999999887532 112333444444455555554 34455443
No 55
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.2e-05 Score=90.36 Aligned_cols=191 Identities=14% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..+||.+..+..+.+++..+. .+.+.++|+.|+||||+|+.+++... -..... . ..+......+.+...-
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln--C~~~~~------~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN--CETGVT------S-TPCEVCATCKAVNEGR 85 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCcCCC------C-CCCccCHHHHHHhcCC
Confidence 467999999999999998765 46779999999999999999988863 111110 0 0011111111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHH-hh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFR----VLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVC-GA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~ 300 (831)
.... +.......++....+.. -..+++-++|+|++.... ....+...+-....+.++|++|.+. .+. ..
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 0000 00011122222211111 123566699999997542 3344433333323445666666543 332 21
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALI 355 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 355 (831)
......+++.+++.++....+.+.+..... .--.+....|++.++|.+..+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 234578999999999999999888765442 2224567889999999875443
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.2e-05 Score=87.34 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=107.4
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++... ...... ...........++....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~--c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN--CQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc--CCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 5679999999999998877654 5678999999999999999998763 111100 00000001111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCC-hhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRF-VEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 300 (831)
.... +.......++. ..+.+.+ .+++-++|+|++.... .+..+...+.......++|++|.+ ..+...
T Consensus 87 ~~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 00000111221 1222221 2345699999997653 344444444333345666665544 333322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
.+....+++.+++.++..+.+.+.+..... .-..+.+..|++.++|.|..+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 223468999999999999888887755431 122456788999999988644
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=89.90 Aligned_cols=198 Identities=18% Similarity=0.133 Sum_probs=113.4
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.+++... ..+.+...+|.|.+... +..-...-+..+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~--c~~~~~~~cg~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN--CSGEDPKPCGECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh--ccCCCCCCCCcChhhHH-HhcCCCCceEEe
Confidence 4579999999999998877655 4569999999999999999998874 22222222333221100 000000000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEc-CChhHHhhc-c
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTT-RFVEVCGAM-K 302 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~~-~ 302 (831)
... .....+.. ..+.+.+ .+++-++|+|+++.. ..+..+...+........+|++| +...+.... .
T Consensus 91 ~~~----~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 91 DAA----SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ccc----ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 000 11112221 1222222 245669999999754 33555544443333344555444 433332222 2
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH-HHHHHHh
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL-ITIGRAM 361 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai-~~~~~~l 361 (831)
....+++.+++.++....+.+.+...... --.+....|++.++|.+--+ ..+-.++
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34689999999999999999988655422 13466789999999988544 4443433
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=4.9e-06 Score=88.76 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=106.9
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-VVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.++.++.+..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.++..... ..+++++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~---~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL---GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh---cccCccceeeecccccccHH-HHHHHHHHH
Confidence 46789999888888888777777788999999999999999999863 12232 12222223222222 222222221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHHhh-ccCCceE
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVCGA-MKAHEYF 307 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~ 307 (831)
...... .-.++.-++|+|+++... ....+...+-.....+++++++... .+... ......+
T Consensus 89 ~~~~~~---------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 89 AQKKVT---------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred Hhcccc---------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 100000 001346699999997642 2222222222223456676665432 22111 1123578
Q ss_pred EcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 308 KVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 308 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
++.++++++....+.+.+......- ..+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999988876544222 2456788999999876443
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.39 E-value=5e-06 Score=84.25 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 003317 161 TLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRS 240 (831)
Q Consensus 161 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (831)
.+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.++++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~----~~~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS----QRGRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH----hCCCeEEEEEHHHHhh---------------------
Confidence 344444444444567899999999999999999999865 2234556665532100
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEEcCCCCc---ccccccc-cCCCC-CCCC-cEEEEEcCCh---------hHHhhccCCc
Q 003317 241 KSLEDKAVDIFRVLSKKKFVLLLDDMWKR---VDLTQLG-VPLPS-PTTA-SKVVFTTRFV---------EVCGAMKAHE 305 (831)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~ 305 (831)
...+ +.+.+.+ --+|++||+... ..|+... ..+.. ...| .++|+||+.. +...++....
T Consensus 87 -~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 87 -FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred -hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 0011 1111211 237899999643 3343221 11111 1123 4788988744 3344556667
Q ss_pred eEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 306 YFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 306 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
.+++.++++++-.+++.+++..... .--+++..-|++.+.|..-++..+
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999999999999887754331 223567888888888876555443
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.2e-09 Score=101.36 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=102.2
Q ss_pred cccEEeccCCCCCCC--CChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcc
Q 003317 559 NLKYLNLDHTTFLHP--IPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFH 636 (831)
Q Consensus 559 ~Lr~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~ 636 (831)
.|+|||||++ .|+. +- +.++.+.+|+.|.+.++.... .....+.+-++
T Consensus 186 Rlq~lDLS~s-~it~stl~-~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~--------------------- 235 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLH-GILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSN--------------------- 235 (419)
T ss_pred hhHHhhcchh-heeHHHHH-HHHHHHHhhhhccccccccCc-------HHHHHHhcccc---------------------
Confidence 5778888876 3332 11 234566667777766665443 22333444344
Q ss_pred cccccccceeeccccCCceeeec-cccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCC---CCc-
Q 003317 637 KLKSCTGSLYLNVWEHSNWLDVL-SLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRD---LTW- 711 (831)
Q Consensus 637 ~l~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~---l~~- 711 (831)
|+.|+|+.|.+.+..... -+.+++.|..|+|+||....-..... ..+--++|..|+|+||.+.-. +..
T Consensus 236 -----L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 236 -----LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred -----ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 455555555543333221 34567778888888886554111110 011236778888888753221 222
Q ss_pred ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccc-cCCCCCCCCCccEEeecCCCC
Q 003317 712 LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKS-IYWSPLPFPQLMEIRVNGCPI 784 (831)
Q Consensus 712 l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-i~~~~~~~p~L~~L~l~~C~~ 784 (831)
...+|+|.+|+|++|..+..-... .+..|+.|++|.++.|-.+-- .-.+....|+|.+|++.+|-.
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~-------~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQ-------EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhCCceeeeccccccccCchHHH-------HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 236788888888887776652211 456788888888887754321 112345678888888887743
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=4.6e-07 Score=91.59 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCCHH-----
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD--LKIERIQDDIWKKIGLCDNSWRSKSLE----- 244 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~----- 244 (831)
.....++|+|++|+|||||++.+++... ..+|+.++|+.+... +++.++++.+...+-.... +.....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~---~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~ 88 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT---KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVA 88 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc---cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHH
Confidence 4567899999999999999999999975 348999999998777 7899999999433322111 111111
Q ss_pred -HHHHHHHHH-HcCCcEEEEEcCCCC
Q 003317 245 -DKAVDIFRV-LSKKKFVLLLDDMWK 268 (831)
Q Consensus 245 -~~~~~l~~~-l~~k~~LlVlDdv~~ 268 (831)
........+ -.+++.++++|++..
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 111222222 247999999999854
No 62
>PTZ00202 tuzin; Provisional
Probab=98.38 E-value=4.5e-05 Score=80.75 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=100.2
Q ss_pred CCCCCcccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 150 RPIEPTVGLESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 150 ~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
.+...|+||+.+...+...|.+ +..+++.|.|++|+|||||++.+..... + ..++.-.. +..++++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------c--eEEEECCC--CHHHHHHH
Confidence 3447899999999999998854 2356999999999999999999986642 1 13333233 67999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHH-----c-CCcEEEEEcCCCCccccccc---ccCCCCCCCCcEEEEEcCChhH
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVL-----S-KKKFVLLLDDMWKRVDLTQL---GVPLPSPTTASKVVFTTRFVEV 297 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~ilvTtR~~~v 297 (831)
++.+||.+. .....++...|.+.+ . +++.+||+-=- +-..+..+ ...+.....-|.|++----+.+
T Consensus 329 LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 329 VVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 999999743 222234444444433 2 56677766421 11111111 0112233345777765443332
Q ss_pred Hhh---ccCCceEEcCCCChHHHHHHHHHHh
Q 003317 298 CGA---MKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 298 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
-.. ...-..|.+++++.++|..+-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 1123468899999999988876654
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=6.5e-06 Score=95.23 Aligned_cols=183 Identities=18% Similarity=0.226 Sum_probs=109.6
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhccC-----------------CCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSRK-----------------DDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~F~~~~wv~~ 214 (831)
..+||.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++....... +.|.-++++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 56799999999999999877665 4589999999999999999988641100 00111122211
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF-T 291 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-T 291 (831)
+....+.. .++|...+. ..-..+++-++|||++... ..+..+...+-......++|+ |
T Consensus 96 as~~kVDd-IReLie~v~------------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 96 ASRTKVDD-TRELLDNVQ------------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccCHHH-HHHHHHHHH------------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 11111111 122221110 0112466779999999754 334444333322233455555 4
Q ss_pred cCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 292 TRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 292 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
|....+... ......|++.+++.++....+.+.+..... ..-.+....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444444322 223478999999999999999887755331 223456788999999988644433
No 64
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=4.5e-07 Score=86.02 Aligned_cols=107 Identities=25% Similarity=0.270 Sum_probs=51.0
Q ss_pred ccc-cccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhh-hcCCcccEEeccCCCCCCCCCh-hhhcCCcc
Q 003317 510 GIE-RWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPREL-KALVNLKYLNLDHTTFLHPIPS-PLISSFSM 584 (831)
Q Consensus 510 ~~~-~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i-~~L~~Lr~L~L~~~~~l~~lp~-~~i~~L~~ 584 (831)
.+. .+.+++.|++++|.+..++....+++|++|++++ +..+++.+ ..+++|++|++++| .|.++.. ..++.+++
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPK 114 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT
T ss_pred chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCC
Confidence 444 4678999999999999999889999999999998 88887655 47999999999999 6766543 13678999
Q ss_pred CcEeeeccccCCCccccccccchhhhcCCcCCCceeE
Q 003317 585 LLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSM 621 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i 621 (831)
|++|++.+|.+... ...-..-+..+++|+.|+-
T Consensus 115 L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCcccch----hhHHHHHHHHcChhheeCC
Confidence 99999999987651 1112233445556665554
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.1e-08 Score=100.35 Aligned_cols=180 Identities=18% Similarity=0.165 Sum_probs=107.2
Q ss_pred CCcccccccC----cCccchhhhcCCcccEEeccCCCCCCC-CChhhhcCCccCcEeeeccccCCCccccccccchhhhc
Q 003317 537 PDLQTLFLKG----INELPRELKALVNLKYLNLDHTTFLHP-IPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELV 611 (831)
Q Consensus 537 ~~Lr~L~L~~----~~~lp~~i~~L~~Lr~L~L~~~~~l~~-lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 611 (831)
..|++|||+. ...+-.-++.+.+|+.|.|.|+ .+.+ +-. .|.+-.+|+.|+++.|.... ....---+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~-~iAkN~~L~~lnlsm~sG~t-----~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVN-TIAKNSNLVRLNLSMCSGFT-----ENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHH-HHhccccceeeccccccccc-----hhHHHHHHH
Confidence 4589999997 2334455678999999999998 4443 333 37788999999999986554 122223345
Q ss_pred CCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc--eeecccccCC
Q 003317 612 QLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD--LKFGCVRVGT 689 (831)
Q Consensus 612 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~ 689 (831)
++..|..|+++++....-.--.... .+ -++|+.|+|+||...- -....+ .
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~-----------------------hi--se~l~~LNlsG~rrnl~~sh~~tL---~ 309 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVA-----------------------HI--SETLTQLNLSGYRRNLQKSHLSTL---V 309 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHh-----------------------hh--chhhhhhhhhhhHhhhhhhHHHHH---H
Confidence 6666666666654422111000000 11 1456666666664321 011111 1
Q ss_pred CCCCCccEEEEEcCCCCCC--CCcccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 690 HAFHSLHTVRIYYCSKLRD--LTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 690 ~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
..+|+|..|+|+.|..+++ ...+.+++.|++|.++.|..+..-... .+...|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~-------~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL-------ELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee-------eeccCcceEEEEeccc
Confidence 1367788888888776665 123557888888888888754321110 4667788888888776
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=1.3e-05 Score=86.04 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=105.9
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe--CCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV--SKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~ 230 (831)
+.++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++... ...+. ..++.+ +....... ..+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~---~~~~~-~~~i~~~~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY---GEDWR-ENFLELNASDERGIDV-IRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc---CCccc-cceEEeccccccchHH-HHHHHHH
Confidence 56799999999999999877777789999999999999999998863 12222 122222 22222111 1111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHHhh-ccCCce
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVCGA-MKAHEY 306 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~ 306 (831)
+....+ .....+-++++|++.... ....+...+......+++|+++... .+... ......
T Consensus 92 ~~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 92 FARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 110000 001235589999986432 2233333333333446676666432 22111 112346
Q ss_pred EEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 307 FKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 307 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
+++.+++.++....+.+.+...... -..+....+++.++|.+.-+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 8999999999988888887654421 22556888999999987654
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=9.8e-08 Score=93.85 Aligned_cols=188 Identities=21% Similarity=0.205 Sum_probs=88.8
Q ss_pred cchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccc----------------cccchhhhcCC
Q 003317 550 LPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVV----------------REVLIDELVQL 613 (831)
Q Consensus 550 lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~L~~L 613 (831)
+|-.+.-+++|..+.+|.|. -+.+-. ....-+.|+++.+.++.+.....+- .......+...
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVD-IELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheec-eeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 45555667788888888873 333322 1223356888888766554311000 00111223333
Q ss_pred cCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCC
Q 003317 614 DHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFH 693 (831)
Q Consensus 614 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 693 (831)
+.|..++++.+.+..+ ....++.+.++.|+++.+. ...+ .++..+++|+.|++++|...++ ..|-. .+.
T Consensus 284 q~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~-i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~----KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI---DESVKLAPKLRRLILSQNR-IRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHL----KLG 352 (490)
T ss_pred hhhhhccccccchhhh---hhhhhhccceeEEeccccc-eeee--hhhhhcccceEeecccchhHhh-hhhHh----hhc
Confidence 4455555554444322 2223334455555555443 1111 1344555556666655543331 12211 245
Q ss_pred CccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 694 SLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 694 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
|.+.|.|.++ .+..+..++++=+|..|++++ +.++.+.. +..++++|.|+.|.|.++
T Consensus 353 NIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~lde------V~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDE------VNHIGNLPCLETLRLTGN 409 (490)
T ss_pred CEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHH------hcccccccHHHHHhhcCC
Confidence 5555555554 444455555555555555555 33443321 114555555555555554
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.34 E-value=1.3e-06 Score=80.07 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcc-CCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSR-KDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
+.+++.|+|.+|+|||++++.+.+...... ...-..++|+.+....+...+...|+.+++.... ...+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHH
Confidence 457899999999999999999999864110 0113467799998888999999999999987653 2356777788888
Q ss_pred HHHcCCcE-EEEEcCCCCc-c--cccccccCCCCCCCCcEEEEEcCC
Q 003317 252 RVLSKKKF-VLLLDDMWKR-V--DLTQLGVPLPSPTTASKVVFTTRF 294 (831)
Q Consensus 252 ~~l~~k~~-LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~ilvTtR~ 294 (831)
+.+...+. +||+||+... . .++.+.. +.+ ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 88876655 9999998654 2 1222222 222 556677766554
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.6e-06 Score=84.88 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=33.3
Q ss_pred CcccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLESTLDKVWSCLG---EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.||||+++++++...+. ....+.+.|+|.+|+|||+|.+.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999993 34679999999999999999999999986
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=90.04 Aligned_cols=194 Identities=13% Similarity=0.125 Sum_probs=110.4
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCC-CCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKD-DFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
+++||.+..++.|.+++..+.+ +.+.++|..|+||||+|+.+.+........ ... + .+..+......+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCcccHHHHHHHcC
Confidence 4579999999999999987765 466899999999999999999886410000 000 0 00000111111111110
Q ss_pred -----hCCCCCCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE-EEEEcCChhHH
Q 003317 231 -----IGLCDNSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK-VVFTTRFVEVC 298 (831)
Q Consensus 231 -----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTtR~~~v~ 298 (831)
+.+.. ......++..+.+... ..++.-++|+|++... ..+..+...+-.-....+ |++||....+.
T Consensus 91 ~hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 91 RFVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00000 0112223322222221 1355669999999754 334444443432223444 55566555553
Q ss_pred hh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 299 GA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 299 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.. .+....+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 2234689999999999999998887654321 2234568899999999865443
No 71
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.28 E-value=1.9e-06 Score=89.93 Aligned_cols=290 Identities=18% Similarity=0.205 Sum_probs=182.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
..+.+.++|.|||||||++-.+.. .+ ..| +.+.++....-.|...+.-.+...++.+. .+-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~----~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA----SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh----hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHH
Confidence 568899999999999999999988 43 556 56667777777777777777777777654 23344556677
Q ss_pred HHHcCCcEEEEEcCCCCccc-ccccccCCCCCCCCcEEEEEcCChhHHhhccCCceEEcCCCChH-HHHHHHHHHhhhcc
Q 003317 252 RVLSKKKFVLLLDDMWKRVD-LTQLGVPLPSPTTASKVVFTTRFVEVCGAMKAHEYFKVECLAHE-KAWILFQEHVERQT 329 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 329 (831)
..+.++|.++|+||.....+ -..+...+..+...-.|+.|+|.... ........+.+|+.. ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 78889999999999754321 11111223333445568888886532 234456788888875 78999987764321
Q ss_pred --cCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHH----HHHhcccCCCCC--chhhhhHHhhccCCC
Q 003317 330 --LESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAI----QVLRRSASEFPG--MDEVYPRLKFSYDSL 401 (831)
Q Consensus 330 --~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l----~~l~~~~~~~~~--~~~~~~~l~~sy~~L 401 (831)
............+|.++..|.|++|...++..+.- ...+-...+ ..+... ..... .......+..||.-|
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhh
Confidence 12223345678899999999999999998888762 222211111 111111 11111 116788899999999
Q ss_pred CchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHhccccccc---CCCeEEeCHHHHH
Q 003317 402 PGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIGVVLHSCLLEEA---GNDWVKMHDVIRD 478 (831)
Q Consensus 402 ~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d 478 (831)
.. .-+.-|--++.|...+... ...|.+.|-..... .......+..+++.+++... ....|+.-+-+|.
T Consensus 238 tg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~----~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 238 TG-WERALFGRLAVFVGGFDLG----LALAVAAGADVDVP----RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred hh-HHHHHhcchhhhhhhhccc----HHHHHhcCCccccc----hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 88 6788888889888766543 23344444322111 12222235667788876543 3335555666666
Q ss_pred HHHHHHhh
Q 003317 479 MALWIATE 486 (831)
Q Consensus 479 ~a~~~~~~ 486 (831)
|+..+-.+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 66665544
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.28 E-value=1.6e-05 Score=79.80 Aligned_cols=141 Identities=17% Similarity=0.104 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..+.+.|+|++|+|||+|++.+++... ..+++. ..+..+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~---------~~~i~~------~~~~~~~~~~---------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD---------ALLIHP------NEIGSDAANA---------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC---------CEEecH------HHcchHHHHh----------------------
Confidence 456799999999999999999887643 113321 1111111111
Q ss_pred HHcCCcEEEEEcCCCCcc-cccccccCCCC-CCCCcEEEEEcCC---------hhHHhhccCCceEEcCCCChHHHHHHH
Q 003317 253 VLSKKKFVLLLDDMWKRV-DLTQLGVPLPS-PTTASKVVFTTRF---------VEVCGAMKAHEYFKVECLAHEKAWILF 321 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf 321 (831)
+.+ -+|++||+.... .-+.+...+.. ...|..||+|++. ++...++.....+++++++.++-.+++
T Consensus 86 -~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 86 -AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred -hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 111 278889995431 11112211211 1346779998873 334445566788999999999999999
Q ss_pred HHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 322 QEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.+++...... --+++..-|++.+.|..-++..
T Consensus 163 ~~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 9998654321 2256788888888887776654
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.27 E-value=9.4e-06 Score=78.69 Aligned_cols=177 Identities=18% Similarity=0.194 Sum_probs=93.5
Q ss_pred CCCCcccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHH
Q 003317 151 PIEPTVGLESTLDKVWSCLG-----EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQD 225 (831)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 225 (831)
..+++||.++-++.+.-++. ++....+.+||++|+||||||..+++... ..|. +++.+.-...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~----~~~~---~~sg~~i~k~----- 89 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG----VNFK---ITSGPAIEKA----- 89 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT------EE---EEECCC--SC-----
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC----CCeE---eccchhhhhH-----
Confidence 34789999988887654432 24678899999999999999999999975 4442 2222111011
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--cc-------ccccccCC-CCCCC-----------
Q 003317 226 DIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VD-------LTQLGVPL-PSPTT----------- 284 (831)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~l~~~l-~~~~~----------- 284 (831)
.+++..+.+ + +++-+|.+|++... .. .+.....+ ...++
T Consensus 90 ------------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 90 ------------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 111222211 1 24456777887542 11 11110000 01111
Q ss_pred CcEEEEEcCChhHHhhccCC--ceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhc
Q 003317 285 ASKVVFTTRFVEVCGAMKAH--EYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMA 362 (831)
Q Consensus 285 gs~ilvTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 362 (831)
-+-|=.|||..-+...+... -..+++..+.+|-.++..+.+..-.. +-..+.+.+|+++|.|-|--..-+-+..+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 13344588875554433332 24589999999999999887754331 22357799999999999976655544443
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=1e-05 Score=94.20 Aligned_cols=169 Identities=21% Similarity=0.243 Sum_probs=99.8
Q ss_pred CCcccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLD---KVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
+.++|.+..+. .+.+.+..+..+.+.++|++|+||||+|+.+++... ..|.. ++.+. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----~~f~~---lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR----AHFSS---LNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc----Cccee---ehhhh-hhhH--------
Confidence 56799888774 466667667778889999999999999999998754 44421 11110 0010
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE--EcCChh--HHh-h
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVL--SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF--TTRFVE--VCG-A 300 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~~-~ 300 (831)
+..+......+.+ .+++.+|||||++.. ..++.+...+ ..|+.++| ||.+.. +.. .
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHh
Confidence 1111112222222 246789999999643 3344443222 33555555 344432 211 1
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcc----cCCCCChHHHHHHHHHHhCCCch
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQT----LESHPDIPELAETVTKECGGLPL 352 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~~~~~~~~~~~~I~~~c~GlPl 352 (831)
......+.+++++.++...++.+.+.... .....-..+....|++.+.|..-
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 12245789999999999999988765211 01112235567888888888654
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.1e-05 Score=87.33 Aligned_cols=187 Identities=20% Similarity=0.224 Sum_probs=107.5
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCC-----------------CCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDD-----------------FDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-----------------F~~~~wv~~ 214 (831)
+.+||.+..+..+.+.+..+.. +.+.++|++|+||||+|+.+++......... +..+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5689999888888888877766 5689999999999999999988764100000 001122222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF-T 291 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-T 291 (831)
+....+..+ +++...... .-..+++-++|+|++... .....+...+........+|+ |
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 111111111 112111110 012245669999998643 233344333333223344444 4
Q ss_pred cCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC-CchHHHHHHHHh
Q 003317 292 TRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG-LPLALITIGRAM 361 (831)
Q Consensus 292 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~~~l 361 (831)
|....+... ......+.+.+++.++....+.+.+..... .-..+....|++.++| ++.|+..+-.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433334332 223468899999999998888887754331 1224567888888865 466776665543
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=4.2e-05 Score=85.33 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=110.8
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDV-VIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
.+++|-+..+..+...+..+. .+.+.++|+.|+||||+|+.+++... -...... --+.. +........+...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln--c~~~~~~~~~~~~----C~~C~~C~~i~~~ 94 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN--CSALITENTTIKT----CEQCTNCISFNNH 94 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CccccccCcCcCC----CCCChHHHHHhcC
Confidence 457999999998888776665 46889999999999999999999864 1111000 00000 0000111111110
Q ss_pred hCCC---CCCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHhh
Q 003317 231 IGLC---DNSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCGA 300 (831)
Q Consensus 231 l~~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~ 300 (831)
.... -+.......++....+... +.+++-++|+|+++.. ..+..+...+......+.+| +||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 0000112222222222111 2356779999999864 34555554444333455555 45555555433
Q ss_pred c-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 301 M-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 301 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
. .....+++.+++.++....+.+.+...... -..+....|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2 234679999999999999999988755421 12456678999999977544
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.4e-05 Score=87.82 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=110.0
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc--c---------------CCCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDS--R---------------KDDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---------------~~~F~~~~wv~~ 214 (831)
..++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++..... . .+.|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5679999999999999977654 557899999999999999999865310 0 011222222222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR-VLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-F 290 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-v 290 (831)
.....+.+ ..++...+.. -..+++-++|+|++... ..+..+...+-.....+.+| +
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 11111111 1111222211 12356679999999753 23444444443333345444 5
Q ss_pred EcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHHHH
Q 003317 291 TTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIGRA 360 (831)
Q Consensus 291 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~ 360 (831)
||....+... ......+++.+++.++....+.+.+...+. .--.+....|++.++|.+- |+..+-.+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6554444422 334578999999999988888876654331 2234556789999999664 55444433
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=1.2e-07 Score=101.30 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=134.4
Q ss_pred ccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 514 WKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
+......+++.|.+..+|.. +.|-.|..|.|.. +..+|..+++|..|.||||+.| ++..+|.. ++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEE
Confidence 44556778888999888877 7788888887775 8889999999999999999999 78999986 76665 888999
Q ss_pred ccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCccee
Q 003317 591 FNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTL 670 (831)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 670 (831)
++|++.. .+.+++.+.+|..|+.+.+.+.++.. -......|+.|.+..+. ...++. .+. .-.|.+|
T Consensus 151 sNNkl~~--------lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~-l~~lp~-El~-~LpLi~l 216 (722)
T KOG0532|consen 151 SNNKLTS--------LPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNH-LEDLPE-ELC-SLPLIRL 216 (722)
T ss_pred ecCcccc--------CCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhh-hhhCCH-HHh-CCceeee
Confidence 9888776 45566677788888887776554432 11112246666665544 222221 233 2358889
Q ss_pred eecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc----ccccCCCceEEEeccc
Q 003317 671 HMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW----LALAPNVRNIGVSTCA 727 (831)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----l~~l~~L~~L~L~~c~ 727 (831)
++++|....++..+. .+..|+.|-|.+|+ +...|. -|+.--.++|++..|.
T Consensus 217 DfScNkis~iPv~fr-----~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFR-----KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCceeecchhhh-----hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 999887777766554 38899999998875 555553 2445556788888773
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=4.1e-05 Score=82.35 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=108.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-VVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||+|+|..+.+..-........ +..-.............+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5679999999999999988765 468999999999999999998886411100111 00000000000001112222110
Q ss_pred hCCCC--------CC-----CCCCCHHHHHHHHHHHHc-----CCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE
Q 003317 231 IGLCD--------NS-----WRSKSLEDKAVDIFRVLS-----KKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF 290 (831)
Q Consensus 231 l~~~~--------~~-----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 290 (831)
..++ +. ......++ +..+.+++. +.+-++|+||+... .....+...+.....++.+|+
T Consensus 99 -~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 99 -AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred -CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 1000 00 01122333 334444442 46679999998653 223333333322233555666
Q ss_pred EcCCh-hHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 291 TTRFV-EVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 291 TtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
+|.+. .+... ......+.+.+++.++..+++.+..... . ......++..++|.|.....+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------P-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------C-HHHHHHHHHHcCCCHHHHHHH
Confidence 66554 33222 2335689999999999999998754211 1 122267899999999866444
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.22 E-value=3.4e-06 Score=88.71 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=66.6
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCC
Q 003317 164 KVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL--KIERIQDDIWKKIGLCDNSWRS 240 (831)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~ 240 (831)
++++.+.. +.-....|+|++|+||||||+.+|+... ..+|+.++||.+++.. ++.++++.+...+-... .+.
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~---~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~ 232 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT---TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDE 232 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH---hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCC
Confidence 34444443 3556788999999999999999999986 3499999999999987 77788888763221111 122
Q ss_pred CCHHHH------HHHHHHH-HcCCcEEEEEcCCCC
Q 003317 241 KSLEDK------AVDIFRV-LSKKKFVLLLDDMWK 268 (831)
Q Consensus 241 ~~~~~~------~~~l~~~-l~~k~~LlVlDdv~~ 268 (831)
....+. ......+ -.+++++|++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 221111 1111111 257999999999853
No 81
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-05 Score=85.47 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=108.4
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.+||.+..+..+..++..+... .+.++|+.|+||||+|+.+++... -...... ..+..... ...+....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~---~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN---EPCNECTS----CLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc---cccCCCcH----HHHHHccC
Confidence 56799999999999999877654 689999999999999999998864 1110000 00011101 12222111
Q ss_pred CCCC---CCCCCCCHH---HHHHHHHH-HHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHhh-
Q 003317 232 GLCD---NSWRSKSLE---DKAVDIFR-VLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCGA- 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~- 300 (831)
.... +.......+ ++.+.+.. -..++.-++|+|++... ..+..+...+-.......+| .||....+...
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 1000 000111122 12222221 12356669999999754 34555544442222334444 45554444322
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
......|.+.+++.++..+.+.+.+...+. .--.+....|++.++|.+.-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHH
Confidence 233467999999999999988887765432 12245678999999998753
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.21 E-value=1.5e-07 Score=95.14 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=61.7
Q ss_pred ccccccceeEEEeccccccc-----cCC-CCCCCCcccccccC------cCccch-------hhhcCCcccEEeccCCCC
Q 003317 510 GIERWKGVRKISLMQNQIRN-----LPF-TPICPDLQTLFLKG------INELPR-------ELKALVNLKYLNLDHTTF 570 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~-----lp~-~~~~~~Lr~L~L~~------~~~lp~-------~i~~L~~Lr~L~L~~~~~ 570 (831)
.....+.+..|+|++|.+.. +.. ..+-++|+.-++++ ..++|+ .+-..++|++||||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34456889999999998753 211 24556889888887 344554 344677999999999943
Q ss_pred CCCCCh---hhhcCCccCcEeeeccccCCC
Q 003317 571 LHPIPS---PLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 571 l~~lp~---~~i~~L~~L~~L~l~~~~~~~ 597 (831)
-..-++ ..|++++.|++|.+.+|.+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 222222 246789999999999997754
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=7.1e-05 Score=81.68 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=108.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCC------------------CCCEEEEEE
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKD------------------DFDVVIWVV 213 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------~F~~~~wv~ 213 (831)
..++|.+..++.+.+++..+.. +.+.++|++|+||||+|+.+.+........ +++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 5679999999999999977654 577899999999999999998886311111 2222 2222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEE
Q 003317 214 VSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFT 291 (831)
Q Consensus 214 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 291 (831)
.+...... ..+++...+... -..+++-++|+|++... .....+...+......+.+|++
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 22111111 112222222100 01234558899998643 2344443344333345666666
Q ss_pred cCChh-HHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 292 TRFVE-VCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 292 tR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
|.+.. +... ......+++.++++++....+...+...... --.+.+..+++.++|.|..+...
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHH
Confidence 65443 2222 2234578899999999998998877654321 12467888999999988665443
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.6e-05 Score=87.59 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=109.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+++||-+..+..|.+++..+.. ..+.++|+.|+||||+|+.+.+.............-. ..+......+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 5679999999999999987765 5678999999999999999987763100000000000 0111122222221100
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHh-h
Q 003317 232 GLC---DNSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCG-A 300 (831)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~-~ 300 (831)
... -+.......++..+.+... ..++.-++|||+++.. ..+..+...+-......++| +||....+.. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 000 0000112222222222111 1234458999999764 23444444443323344555 4555444432 2
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
......+++.+++.++....+.+.+...+.. -..+....|++.++|.+.-+..
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 3345789999999999999998887654422 2245678899999997754433
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=5.3e-08 Score=100.37 Aligned_cols=263 Identities=16% Similarity=0.130 Sum_probs=159.6
Q ss_pred cccceeEEEeccccccccCC------CCCCCCcccccccCcCccc-----hhhhcCCcccEEeccCCCCCCC--CChhhh
Q 003317 513 RWKGVRKISLMQNQIRNLPF------TPICPDLQTLFLKGINELP-----RELKALVNLKYLNLDHTTFLHP--IPSPLI 579 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~~lp~------~~~~~~Lr~L~L~~~~~lp-----~~i~~L~~Lr~L~L~~~~~l~~--lp~~~i 579 (831)
..+++.+|++.++. .+.. ...|++|+.|++.....+. .-...+++|+||+++.|..++. +-. ..
T Consensus 162 ~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~ 238 (483)
T KOG4341|consen 162 NCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQ 238 (483)
T ss_pred hCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH-Hh
Confidence 34566677777665 2211 1678999999888722222 2345789999999999977665 212 23
Q ss_pred cCCccCcEeeeccccCCCccccccccchhhh-cCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeee
Q 003317 580 SSFSMLLVLRMFNCKSSSMANVVREVLIDEL-VQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDV 658 (831)
Q Consensus 580 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~ 658 (831)
..+.+|+.+.+.+|.-.. +. .+..+ .....+-.+++.-+...+-..+......+..|+.|..+++....+...
T Consensus 239 rG~~~l~~~~~kGC~e~~-----le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELE-----LE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred ccchhhhhhhhccccccc-----HH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 456667777777764433 11 11111 111111122211111112223344444556788899888887555544
Q ss_pred cccc-CCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCC--Ccc-cccCCCceEEEecccCccccc
Q 003317 659 LSLG-ELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDL--TWL-ALAPNVRNIGVSTCANMEEII 733 (831)
Q Consensus 659 ~~l~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~l~ 733 (831)
..+. +..+|+.|.+.+|.... .....++ .+.+.|+.+++.+|....+- -.+ .++|.|+.|.++.|..+.+..
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLG---RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhh---cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence 4443 56899999999998654 2222222 35788999999998654443 222 368999999999998877651
Q ss_pred cCCccccccCCCCCCccceecccccccccccCC-CCCCCCCccEEeecCCCCCCCCCC
Q 003317 734 SPGKISQVQNLDPFAKLEYLVLENLMNLKSIYW-SPLPFPQLMEIRVNGCPILQKLPL 790 (831)
Q Consensus 734 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~-~~~~~p~L~~L~l~~C~~L~~lp~ 790 (831)
..... ..-.+...|+.|.+++||.+.+-.. ....+++|+.+++.+|....+-|.
T Consensus 390 i~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 390 IRHLS---SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hhhhh---hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 10000 0334567899999999988765332 234588999999998887766544
No 86
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.18 E-value=3e-05 Score=77.46 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
....+.|+|..|+|||.|.+++++... ....=..++++ +..+....+...+.. ... ..+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~--~~~~~~~v~y~------~~~~f~~~~~~~~~~-------~~~----~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQ--KQHPGKRVVYL------SAEEFIREFADALRD-------GEI----EEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHH--HHCTTS-EEEE------EHHHHHHHHHHHHHT-------TSH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH--hccccccceee------cHHHHHHHHHHHHHc-------ccc----hhhhh
Confidence 345689999999999999999999875 11222346666 556666677666532 112 23444
Q ss_pred HHcCCcEEEEEcCCCCcc---ccccc-ccCCC-CCCCCcEEEEEcCCh---------hHHhhccCCceEEcCCCChHHHH
Q 003317 253 VLSKKKFVLLLDDMWKRV---DLTQL-GVPLP-SPTTASKVVFTTRFV---------EVCGAMKAHEYFKVECLAHEKAW 318 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~---~~~~l-~~~l~-~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~ 318 (831)
.++ .-=+|++||++... .|.+. ...+. ....|.+||+|++.. +...++...-.+++.+.+.++-.
T Consensus 94 ~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 444 33478899997532 23221 11111 013467899999633 23345556678999999999999
Q ss_pred HHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 319 ILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 319 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
.++.+.+...... --++++.-|++.+.+..-.+..+
T Consensus 173 ~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 173 RILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9999998765422 23566777777777665554433
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=4.3e-05 Score=85.88 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=108.1
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.+++... -.. |... ..+......+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~------~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN------PKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC------CCCC-CCCcccHHHHHHHcCC
Confidence 567999999999999987654 45788999999999999999998864 111 1110 0111112222221111
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH-----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE-EcCChhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRV-----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF-TTRFVEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 300 (831)
.... +.......++.. .+.+. ..+++=++|+|++... ..+..+...+-.......+|+ |+....+...
T Consensus 87 h~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 0000 000011222211 11111 1233447999998653 334444333322223444544 5444444322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIGR 359 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~ 359 (831)
......+++.+++.++....+.+.+...... --.+.+..+++.++|.+. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2335689999999999998888877544311 124567889999999664 4444444
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.1e-05 Score=88.31 Aligned_cols=193 Identities=16% Similarity=0.118 Sum_probs=109.3
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..+||.+..++.+.+.+..+.+ +.+.++|+.|+||||+|+.+++..... ..+. +..+......+.|...-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~--~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE--TGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc--cCCC-------CCCCCCCHHHHHHHcCC
Confidence 5679999999999999987665 456899999999999999999886411 1000 00111112222222100
Q ss_pred CCC---CCCCCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE-EEEEcCChhHHh-h
Q 003317 232 GLC---DNSWRSKSLEDKAVDIFR----VLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK-VVFTTRFVEVCG-A 300 (831)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTtR~~~v~~-~ 300 (831)
... .+.......++..+.+.. -..+++-++|+|++... .....+...+-......+ |++||....+.. .
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000 000001122222211111 12456679999999754 234444333322223344 445555554432 2
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
......|++.+++.++....+.+.+..... ..-.+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 233578999999999999999887754331 122455688999999988644433
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.15 E-value=2e-05 Score=79.82 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~----~~~~~v~y~~~~~------~~~~--------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE----QRGEPAVYLPLAE------LLDR--------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH----hCCCcEEEeeHHH------HHhh--------------------hHHHHHh
Confidence 46789999999999999999998764 2224566775422 2110 0122223
Q ss_pred HcCCcEEEEEcCCCCc---ccccc-cccCCCC-CCCCcEEEEEcCChhH---------HhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKR---VDLTQ-LGVPLPS-PTTASKVVFTTRFVEV---------CGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
+.+-. +||+||+... ..|+. +...+.. ...|..||+|++...- ..++.....+++++++.++-..
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 33222 6788999632 34433 2222211 2346778888874322 2333445678999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
++++++...... --+++..-|++.+.|..-++..+-
T Consensus 174 il~~ka~~~~~~---l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 174 ALQLRASRRGLH---LTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 998776543211 225677888888888765554433
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00012 Score=82.42 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=107.5
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcc-----------------CCCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSR-----------------KDDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~~F~~~~wv~~ 214 (831)
+++||-+..++.+.+++..+.++ .+.++|+.|+||||+|+.+++...... .+.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 56799999999999999776654 578999999999999999998764110 011111223322
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF-T 291 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-T 291 (831)
+....++++ +++++.+... -..++.-++|+|++... .....+...+-.....+++|+ |
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 222222221 2222222110 11245568999999754 234434333332223455554 5
Q ss_pred cCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 292 TRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 292 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
|....+... ......+++.+++.++....+.+.+...+.. --.+....|++.++|.+.-+..
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHH
Confidence 544444322 2234678999999999888877776554321 1234567899999998854433
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.6e-05 Score=87.40 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=106.0
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcc-----------------CCCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSR-----------------KDDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~~F~~~~wv~~ 214 (831)
+.+||.+..+..|.+++..+.+ +.+.++|+.|+||||+|+.+.+...... .+.|..++.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 4579999999999999987664 5789999999999999999988753100 000111112221
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCCccc--ccccccCCCCCCCCcEE
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR----VLSKKKFVLLLDDMWKRVD--LTQLGVPLPSPTTASKV 288 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~i 288 (831)
+.. ...+.....+.. -..+++-++|+|++..... ...+...+-.....+++
T Consensus 96 As~-----------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 96 ASN-----------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred ccc-----------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 111 112222111111 0125666999999975432 33333333222234556
Q ss_pred EEEcCC-hhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 289 VFTTRF-VEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 289 lvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
|++|.+ ..+... .+....|++.+++.++....+.+.+...... --.+....|++.++|.+.-+..
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHH
Confidence 655543 333211 2233578899999999999998887655422 2245678999999998854433
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=7.8e-05 Score=79.71 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=111.4
Q ss_pred CCCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 152 IEPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
...++|.+...+.+...+..+.. ..+.|+|+.|+||||+|..+.+..-......+... ............+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 35679999999999999987654 56999999999999999999998741100012111 001111112233333222
Q ss_pred -------hCCCCCC-----CCCCCHHHHHHHHHHHHc-----CCcEEEEEcCCCCcc--cccccccCCCCCCCC-cEEEE
Q 003317 231 -------IGLCDNS-----WRSKSLEDKAVDIFRVLS-----KKKFVLLLDDMWKRV--DLTQLGVPLPSPTTA-SKVVF 290 (831)
Q Consensus 231 -------l~~~~~~-----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g-s~ilv 290 (831)
+..+.+. ......++. ..+.+++. +++-++|+|++.... ....+...+-..... .-|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 1000000 011223332 34444443 466799999997542 223332222211223 34555
Q ss_pred EcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 291 TTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 291 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
|++...+... .+....+++.+++.++..+++.+.... . . -..+.+..|++.++|.|.....+
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554444222 223468999999999999999874321 1 1 12455788999999999866443
No 93
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=9e-05 Score=82.30 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
..-+.|+|..|+|||+|++++.+... ....-..++++ +..++...+...++... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~--~~~~~~~v~yv------~~~~f~~~~~~~l~~~~---------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE--SNFSDLKVSYM------SGDEFARKAVDILQKTH---------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH--HhCCCCeEEEE------EHHHHHHHHHHHHHHhh---------hHHHHHHHH
Confidence 45689999999999999999999764 11222344555 44567777776664210 122334444
Q ss_pred HcCCcEEEEEcCCCCcc---cc-cccccCCCC-CCCCcEEEEEcCCh---------hHHhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKRV---DL-TQLGVPLPS-PTTASKVVFTTRFV---------EVCGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
+++ .-+||+||+.... .+ +.+...+.. ...|..||+|+... .+..++...-.+.+++++.++-.+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 4488899996432 12 222222211 12355788887632 233445556688999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHH
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGR 359 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 359 (831)
++.+++...... ..-.+++..-|++.++|.|-.+..+..
T Consensus 283 iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999988653311 123367889999999999987765543
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=6.7e-06 Score=89.51 Aligned_cols=170 Identities=22% Similarity=0.258 Sum_probs=98.6
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+.+.|++..++++.+.+.. ...+-+.++|++|+|||++|+.+++... ..|- .+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~----~~~~-----~v~~--- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFI-----RVVG--- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC----CCEE-----ecch---
Confidence 3468999999998887631 1356699999999999999999999864 3332 2211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc----------------cccccccCCC--
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV----------------DLTQLGVPLP-- 280 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~-- 280 (831)
..+.... ++ ........+.+.. ...+.+|++||++... .+..+...+.
T Consensus 190 -~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 -SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred -HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 1111110 00 0111222222222 3467899999986431 0111111111
Q ss_pred CCCCCcEEEEEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 281 SPTTASKVVFTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 281 ~~~~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....+.+||.||..... .+.......+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 11235678888775432 22112245789999999999999998876543222222 466777787764
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.6e-05 Score=82.59 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=108.3
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhcc-----------------CCCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSR-----------------KDDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~~F~~~~wv~~ 214 (831)
+++||.+..++.+.+.+..+..+ .+.++|+.|+||||+|+.+++...... .+.+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56799999999888888777655 899999999999999999987542000 011112233333
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVF-T 291 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv-T 291 (831)
+....+.+ .+++++..... -..++.=++|+|++.... ....+...+-.....+++|+ |
T Consensus 93 as~~~vdd-IR~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDD-IKVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHH-HHHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 22222222 11222211100 012455689999996542 24444333433334455555 5
Q ss_pred cCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 292 TRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 292 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
|....+... ......+++.+++.++....+.+.+...... --.+....|++.++|.+..+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 444454332 2345689999999999999998887755421 22456788999999977543
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=6.8e-05 Score=81.35 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=101.9
Q ss_pred CCcccchHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEEN----------VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIER 222 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (831)
+.++|.+..++.+.+.+..+. .+.+.++|+.|+|||++|+.+++..-.. ..- + .......
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~--~~~----~----~~Cg~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT--DPD----E----PGCGECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--CCC----C----CCCCCCH
Confidence 457899999999999887643 4678899999999999999998875311 000 0 0000011
Q ss_pred HHHHHHHHhCCCC-----CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEE
Q 003317 223 IQDDIWKKIGLCD-----NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVF 290 (831)
Q Consensus 223 ~~~~i~~~l~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv 290 (831)
..+.+...- .+. ........++.. .+.+.+ .+++-++|+|++.... ....+...+-....+..+|+
T Consensus 75 ~C~~~~~~~-hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 75 ACRTVLAGT-HPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred HHHHHhcCC-CCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 111111000 000 000111222222 222222 2455588889997542 22333333322233455555
Q ss_pred EcCC-hhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 291 TTRF-VEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 291 TtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
+|.+ ..+... ......+.+.+++.++..+.+.+..+ ...+.+..++..++|.|.....
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--------~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--------VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 5544 444322 23356899999999999888874321 1135578899999999975533
No 97
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=0.00012 Score=74.60 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=115.1
Q ss_pred HHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 003317 162 LDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF--DVVIWVVVSKDLKIERIQDDIWKKIGLCDN 236 (831)
Q Consensus 162 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 236 (831)
++++.+++.. ...+-+.|||.+|.|||++++.+...+.......- -.++.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3444444433 35678999999999999999999988752111111 157788889999999999999999998865
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CcEEEEEcCCCCcc-----ccccc---ccCCCCCCCCcEEEEEcCChhHHhhc-----c
Q 003317 237 SWRSKSLEDKAVDIFRVLSK-KKFVLLLDDMWKRV-----DLTQL---GVPLPSPTTASKVVFTTRFVEVCGAM-----K 302 (831)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~~~-----~ 302 (831)
. ..+...........++. +-=+||+|++.+.- .-..+ ...+.+.-.-+-|.|-|+..--+-.. .
T Consensus 126 ~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 126 P--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred C--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 3 34445555555566654 44489999997631 11111 11222222335566666533222111 1
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhc---ccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQ---TLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
-..++.++.-..++-+.-|...+... ...+.-...++++.|...++|+.--+..
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 12456666666554443333332211 1122334578999999999998755433
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.6e-05 Score=85.65 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=110.4
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE-eCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV-VSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~ 230 (831)
+.++|.+..++.+.+++..+.++ .+.++|+.|+||||+|+.+++... -........|.. +......-...+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~--c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN--CQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc--CCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 56799999999999999877664 588999999999999999998874 111111111110 00111111122222211
Q ss_pred hCCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEc-CChhHHh
Q 003317 231 IGLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTT-RFVEVCG 299 (831)
Q Consensus 231 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 299 (831)
..... +.......++..+ +.+.+ .+++-++|+|++... ..+..+...+....+.+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 10000 0001111233222 22333 245568899998754 34555554554434456655544 4444432
Q ss_pred hc-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 300 AM-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 300 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
.. .....+++.++++++....+...+..... .-..+.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 21 12357889999999998888877654321 123567889999999977544
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.09 E-value=5.4e-05 Score=76.66 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=96.4
Q ss_pred CCcc-cchHHH-HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTV-GLESTL-DKVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~v-Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
++|+ |..... ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~-~~~~i~~~~~~------~~--- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGR-NARYLDAASPL------LA--- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCC-cEEEEehHHhH------HH---
Confidence 3444 544333 334344332 3457889999999999999999999864 1222 33444432211 00
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccc--cccccCCCC-CCCCc-EEEEEcCChhHHh------
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDL--TQLGVPLPS-PTTAS-KVVFTTRFVEVCG------ 299 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~ilvTtR~~~v~~------ 299 (831)
+ ... ...-+||+||+.....+ ..+...+.. ...|. .+|+|++......
T Consensus 85 -~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 -F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred -H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 011 23347889999653221 122222211 12333 4667766433211
Q ss_pred --hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 300 --AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 300 --~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
.+.....+++.++++++-..++.+.+..... .--++..+.+++.+.|.+..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2333468899999998877777665433221 2234677888888999988876655554
No 100
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=2.7e-06 Score=94.30 Aligned_cols=85 Identities=29% Similarity=0.348 Sum_probs=62.3
Q ss_pred cccccceeEEEeccccccccCCCCCCC--CcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICP--DLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~--~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
+..++.+..+++.++.+..+++..... +|+.|++++ +..+|..++.+++|+.|++++| .+..+|.. .+.+.+|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhh
Confidence 334466778888888888877764332 788888877 6777777788888888888888 67777774 55777888
Q ss_pred EeeeccccCCC
Q 003317 587 VLRMFNCKSSS 597 (831)
Q Consensus 587 ~L~l~~~~~~~ 597 (831)
.|+++++.+..
T Consensus 190 ~L~ls~N~i~~ 200 (394)
T COG4886 190 NLDLSGNKISD 200 (394)
T ss_pred heeccCCcccc
Confidence 88888877766
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=0.00012 Score=71.67 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=91.6
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccC------------------CCCCEEEEEEeCC-CCCHHHH
Q 003317 164 KVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRK------------------DDFDVVIWVVVSK-DLKIERI 223 (831)
Q Consensus 164 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~~F~~~~wv~~s~-~~~~~~~ 223 (831)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+....... .+.|. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45556655555 67999999999999999999888641100 11121 2221111 1111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCCh-hHHhh
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFV-EVCGA 300 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~ 300 (831)
.++++..+... -..+.+-++|+||+... ...+.+...+......+.+|++|++. .+...
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 12222222110 01245668999998653 23444444443333445566666543 33221
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
......+.+.+++.++..+.+.+. + -..+.+..|++.++|.|..
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--g-------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--G-------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--C-------CCHHHHHHHHHHcCCCccc
Confidence 123468999999999998888776 1 1145688999999998853
No 102
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=4.8e-06 Score=92.32 Aligned_cols=190 Identities=26% Similarity=0.303 Sum_probs=132.3
Q ss_pred EEEeccccc-cccCCCCCCCCcccccccC--cCccchhhhcCC-cccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 519 KISLMQNQI-RNLPFTPICPDLQTLFLKG--INELPRELKALV-NLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 519 ~L~l~~~~i-~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~-~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
.+.+..+.+ ........++++..|++.+ +..+|..++.+. +|+.|++++| .+..+|.. +..+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCch
Confidence 466666665 3333335667888888887 888998888885 9999999999 78888754 8999999999999998
Q ss_pred CCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecC
Q 003317 595 SSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQF 674 (831)
Q Consensus 595 ~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 674 (831)
+.. .+.....+..|+.|.++.+.+..++... .....|..|.++++...... ..+..+.++..|.+.+
T Consensus 175 l~~--------l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 175 LSD--------LPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSN 241 (394)
T ss_pred hhh--------hhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceecc--hhhhhcccccccccCC
Confidence 876 2222336677777777766655444321 23335788888776422222 1456677777777666
Q ss_pred CCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCc
Q 003317 675 PFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANM 729 (831)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l 729 (831)
+....+ +.... .+++|+.|+++++ .+..++.++.+.+|+.|++++....
T Consensus 242 n~~~~~-~~~~~----~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 242 NKLEDL-PESIG----NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceeeec-cchhc----cccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 654432 23332 4778999999887 6777777888999999999885443
No 103
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.5e-05 Score=84.45 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=64.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCCHH--HHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD--LKIERIQDDIWKKIGLCDNSWRSKSLE--DKA 247 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~ 247 (831)
+.-..++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.+...+-.... +..... ..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~---~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~--d~p~~~~~~va 240 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT---RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTF--DEPASRHVQVA 240 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc---ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecC--CCChHHHHHHH
Confidence 3567899999999999999999999975 348999999999876 7899999998654332221 111111 111
Q ss_pred H----HHHHH-HcCCcEEEEEcCCCC
Q 003317 248 V----DIFRV-LSKKKFVLLLDDMWK 268 (831)
Q Consensus 248 ~----~l~~~-l~~k~~LlVlDdv~~ 268 (831)
. ..... -.+++.+|++|++..
T Consensus 241 ~~v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEChhH
Confidence 1 11122 258999999999853
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00024 Score=80.46 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=111.9
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++... -....+ ...++.....+.|....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~--C~~~~~-------~~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN--CETAPT-------GEPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc--ccCCCC-------CCCCcccHHHHHHhcCC
Confidence 467999988888888887765 57888999999999999999998864 111000 00111111112221110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH-----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE-EcCChhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRV-----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF-TTRFVEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 300 (831)
.... +.......++. +.+.+. ..+++-++|+|++... .....+...+........+|+ |+....+...
T Consensus 87 hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 0000 00001112221 112222 2356679999999654 334444444432223444555 4443444322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHHHhc
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP-LALITIGRAMA 362 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~l~ 362 (831)
......+++.+++.++....+.+.+..... .-..+.++.|++.++|.+ .|+..+..++.
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 223457899999999999999887765431 123466888999999965 67777765553
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00016 Score=79.17 Aligned_cols=180 Identities=11% Similarity=0.174 Sum_probs=104.3
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcc----CCCCCE-EEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSR----KDDFDV-VIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~~F~~-~~wv~~s~~~~~~~~~~~ 226 (831)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+...+.. ...|.. ++-+......+. +..++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHH
Confidence 5679999999999999977654 5888999999999999999988764100 011211 111111111111 11122
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEc-CChhHHhh-cc
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTT-RFVEVCGA-MK 302 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~-~~ 302 (831)
+++++... -..+++-++|+|++.... .+..+...+......+.+|++| ....+... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22222110 012355589999986432 2444433332222344555444 43333221 22
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
....+++.++++++....+.+.+....... ..+.+..|++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 345789999999999999988776544211 2467888899999866533
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00011 Score=83.15 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=106.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcc-----------------CCCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSR-----------------KDDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~~F~~~~wv~~ 214 (831)
..++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+...... .+.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 5679999999999999987665 4568999999999999999988763110 001111222222
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEE-E
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVF-T 291 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv-T 291 (831)
+....+.+ .++++..+... -..+++-++|+|++.... ....+...+-.....+.+|+ |
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 11111111 11222211100 013556699999997543 23334333333223455554 5
Q ss_pred cCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 003317 292 TRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITI 357 (831)
Q Consensus 292 tR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~ 357 (831)
|....+... ......+++.+++.++....+.+.+..... ..-.+....|++.++|.+- |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333311 122467899999999999888887754431 1224556889999999775 44444
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=2.3e-06 Score=66.31 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=26.7
Q ss_pred hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 553 ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 553 ~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
.+..+++|++|++++| .++.+|++++..+++|++|++++|.
T Consensus 20 ~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4456666666677666 5666666556667777777766664
No 108
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=1.5e-06 Score=85.71 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHh
Q 003317 554 LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFL 633 (831)
Q Consensus 554 i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~ 633 (831)
+...+.|..||||+| .|+.+..+ +.-++.++.|++++|.+.. +.+|..|.+|+.|+++.+....+..+.
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~~---------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIRT---------VQNLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhh-hhhccceeEEeccccceee---------ehhhhhcccceEeecccchhHhhhhhH
Confidence 334566778888888 67777764 6677788888888877665 445777777777777766544433322
Q ss_pred hcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCC
Q 003317 634 SFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCS 704 (831)
Q Consensus 634 ~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 704 (831)
.-..+++.|.+..+. ..++ +.+.++=+|..|++++|++.++. ... ...++|.|+.|.|.+++
T Consensus 349 ---~KLGNIKtL~La~N~-iE~L--SGL~KLYSLvnLDl~~N~Ie~ld--eV~-~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 ---LKLGNIKTLKLAQNK-IETL--SGLRKLYSLVNLDLSSNQIEELD--EVN-HIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---hhhcCEeeeehhhhh-Hhhh--hhhHhhhhheeccccccchhhHH--Hhc-ccccccHHHHHhhcCCC
Confidence 223467777776644 1222 24556667788888888765521 111 23357888888887775
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00066 Score=67.47 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=100.5
Q ss_pred CCcccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLG-----EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
..|||.++.++++.=++. ++.+--|.++|++|.||||||.-+++... ..+. ++-+....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg----vn~k----~tsGp~le-------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG----VNLK----ITSGPALE-------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc----CCeE----eccccccc--------
Confidence 578999998888765553 35788999999999999999999999975 2221 11111100
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---------cccccccC-CCCCCCCcE----------
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---------DLTQLGVP-LPSPTTASK---------- 287 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~~-l~~~~~gs~---------- 287 (831)
...+++..|-. |+ +.=++.+|.+.... ..+++..- .-..++++|
T Consensus 90 --------------K~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 --------------KPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --------------ChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 11111111111 11 23345567664321 11111000 011223333
Q ss_pred -EEEEcCChhHHhhcc--CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 288 -VVFTTRFVEVCGAMK--AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 288 -ilvTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
|=-|||.-.+...+. -.-+.+++-.+.+|-.++..+.+..-.... ..+-+.+|+++..|-|--..-+-+..
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 335888554432222 234678999999999999999886544222 24568999999999997554444433
No 110
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.99 E-value=5e-07 Score=96.75 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=116.3
Q ss_pred ccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
.+..+..+..+.|..|.+..+|.. .++..|.+|+|+. +..+|..++.|+ |+.|-+++| +++.+|.+ |+.+..|.
T Consensus 93 ~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~ 169 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHH
Confidence 344556677777888888888876 8888888888886 788898888875 899999998 78999987 88888999
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHH-HHhhcccccccccceeeccccCCceeeeccccCCC
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALE-RFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELK 665 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~ 665 (831)
.||.+.|.+.. .+..+..|..|+.|++..+....+. ++.++ .|..|+++.+. ...++. .+.+|+
T Consensus 170 ~ld~s~nei~s--------lpsql~~l~slr~l~vrRn~l~~lp~El~~L-----pLi~lDfScNk-is~iPv-~fr~m~ 234 (722)
T KOG0532|consen 170 HLDVSKNEIQS--------LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-----PLIRLDFSCNK-ISYLPV-DFRKMR 234 (722)
T ss_pred Hhhhhhhhhhh--------chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-----ceeeeecccCc-eeecch-hhhhhh
Confidence 99999888776 5777888888888877766544332 22222 47788887544 566665 688999
Q ss_pred CcceeeecCCCCCc
Q 003317 666 NLHTLHMQFPFLDD 679 (831)
Q Consensus 666 ~L~~L~l~~~~~~~ 679 (831)
+|++|.|.+|+.-.
T Consensus 235 ~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 235 HLQVLQLENNPLQS 248 (722)
T ss_pred hheeeeeccCCCCC
Confidence 99999999887654
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00016 Score=82.68 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=110.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCE--EEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDV--VIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~i~~ 229 (831)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++.... ...... ..+ ..+......+.|..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c--~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY--EGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc--CCccccCCCcc----ccCcccHHHHHHhc
Confidence 5679999999999999987754 47899999999999999999987641 111100 000 00111111222221
Q ss_pred HhCCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEE-EEcCChhHH
Q 003317 230 KIGLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVV-FTTRFVEVC 298 (831)
Q Consensus 230 ~l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il-vTtR~~~v~ 298 (831)
.-.... +.......++... +.+.+ .+++=++|+|++.... ....+...+-.....+.+| +||....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 110000 0001122222222 21222 2445589999986542 2444443343333345555 455544443
Q ss_pred hhc-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 299 GAM-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 299 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
..+ .....+++..++.++....+.+.+...... --.+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 234689999999999999998887654321 22466788999999988655443
No 112
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.97 E-value=0.0003 Score=77.93 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
...+.|+|+.|+|||+|++++++... ....-..+++++ ..++...+...+.. ...+ .+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~------~~~~~~~~~~~~~~-------~~~~----~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVS------SEKFTNDFVNALRN-------NKME----EFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEE------HHHHHHHHHHHHHc-------CCHH----HHHHH
Confidence 45789999999999999999999875 111123455663 34455555555532 1222 23333
Q ss_pred HcCCcEEEEEcCCCCccc---c-cccccCCCC-CCCCcEEEEEcCCh-h--------HHhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKRVD---L-TQLGVPLPS-PTTASKVVFTTRFV-E--------VCGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
+++ .-+|||||+..... + +.+...+.. ...|..+|+|+... . +...+.....+.+++.+.++-..
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 333 34888999974321 1 112111111 12355678877642 1 22233334578999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHH
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGLPLALI 355 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 355 (831)
++.+.+...... --+++...|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~---l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLE---LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHH
Confidence 999988754322 225678888899888776443
No 113
>PF14516 AAA_35: AAA-like domain
Probab=97.96 E-value=0.002 Score=68.93 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=118.4
Q ss_pred CcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-----CCHHHHHHHHH
Q 003317 154 PTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-----LKIERIQDDIW 228 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~ 228 (831)
..|.|...-+++.+.|.+ ....+.|.|+-.+|||+|...+.+..+ +..+ .++++++..- .+....++.++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~---~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQ---QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred cccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHH---HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 448998777777777754 356899999999999999999998875 2333 4557776552 24555555554
Q ss_pred ----HHhCCCCCC---C--CCCCHHHHHHHHHHHH---cCCcEEEEEcCCCCcccc----cccccCC----------CCC
Q 003317 229 ----KKIGLCDNS---W--RSKSLEDKAVDIFRVL---SKKKFVLLLDDMWKRVDL----TQLGVPL----------PSP 282 (831)
Q Consensus 229 ----~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~l~~~l----------~~~ 282 (831)
++++....- + ...........+.+.+ .+++.+|++|+|+..... .++...+ +..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 455443210 0 0112223333444433 268999999999753211 1111100 000
Q ss_pred CCCcEEEEEc-CChhHHh----hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 283 TTASKVVFTT-RFVEVCG----AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 283 ~~gs~ilvTt-R~~~v~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
..=+-|++.+ +...... .+.....++|++++.+|...|..+.-..- -....++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHH
Confidence 0111122222 1111111 12223578999999999999987763211 1233899999999999999999
Q ss_pred HHHhccC
Q 003317 358 GRAMACK 364 (831)
Q Consensus 358 ~~~l~~~ 364 (831)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999763
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.95 E-value=0.00026 Score=79.47 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
...+.|+|++|+|||+|++.+++... ....-..+++++ ..++..++...+.. ... ..+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL--EKNPNAKVVYVT------SEKFTNDFVNALRN-------NTM----EEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEEE------HHHHHHHHHHHHHc-------CcH----HHHHHH
Confidence 46789999999999999999999975 111123455663 33444555555431 112 223333
Q ss_pred HcCCcEEEEEcCCCCccc----ccccccCCCC-CCCCcEEEEEcCChh---------HHhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKRVD----LTQLGVPLPS-PTTASKVVFTTRFVE---------VCGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
++ +.-+|||||+..... .+.+...+.. ...|..||+||.... +...+.....+.+++.+.++-..
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 43 344899999964211 1222211110 123456788776431 22344445689999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
++.+.+..... .--+++..-|++.+.|..-.+
T Consensus 288 il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 288 ILKKKAEEEGI---DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHH
Confidence 99998865331 123567888999998877644
No 115
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.95 E-value=0.00011 Score=75.89 Aligned_cols=154 Identities=13% Similarity=0.110 Sum_probs=80.3
Q ss_pred CCcccchHHHHHHHHH---hc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC
Q 003317 153 EPTVGLESTLDKVWSC---LG------------EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD 217 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~---L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~ 217 (831)
..++|.+..+++|.+. .. ......+.++|++|+||||+|+.+++... ..+.-....++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~--~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK--EMNVLSKGHLIEVERA 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH--hcCcccCCceEEecHH
Confidence 3468887777666433 21 02346788999999999999999988753 1111111123333221
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc----------cccccccCCCCCCCCcE
Q 003317 218 LKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV----------DLTQLGVPLPSPTTASK 287 (831)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~ 287 (831)
++.. .. ...........+.. . ..-+|++|++.... ....+...+........
T Consensus 84 ----~l~~----~~-------~g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 84 ----DLVG----EY-------IGHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred ----Hhhh----hh-------ccchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 1111 10 00111111111211 1 23488999996421 12223222222223334
Q ss_pred EEEEcCChhH----------HhhccCCceEEcCCCChHHHHHHHHHHhhhc
Q 003317 288 VVFTTRFVEV----------CGAMKAHEYFKVECLAHEKAWILFQEHVERQ 328 (831)
Q Consensus 288 ilvTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 328 (831)
+|+++...+. ...+ ...+.+++++.++-.+++.+.+...
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 5555543322 1111 3468899999999999998887644
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.94 E-value=0.00022 Score=74.43 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS 255 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (831)
-+.++|++|+||||+|+.+++... ..+......++.++. .++ ...+.. .........+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~--~~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH--RLGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH--HcCCcccceEEEecH----HHH----hHhhcc-------cchHHHHHHHHHc--
Confidence 688999999999999988887764 112222223444442 122 222211 1111112222221
Q ss_pred CCcEEEEEcCCCCc-----------ccccccccCCCCCCCCcEEEEEcCChhHHhhc--------cCCceEEcCCCChHH
Q 003317 256 KKKFVLLLDDMWKR-----------VDLTQLGVPLPSPTTASKVVFTTRFVEVCGAM--------KAHEYFKVECLAHEK 316 (831)
Q Consensus 256 ~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~e 316 (831)
..-+|+||++... ..+..+...+.....+.+||+++......... .....+.+++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3368899998632 11223333333333456677766543221111 113568999999999
Q ss_pred HHHHHHHHhhhc
Q 003317 317 AWILFQEHVERQ 328 (831)
Q Consensus 317 ~~~Lf~~~~~~~ 328 (831)
-.+++...+...
T Consensus 200 l~~I~~~~l~~~ 211 (284)
T TIGR02880 200 LLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHHHh
Confidence 999998877543
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00019 Score=84.85 Aligned_cols=189 Identities=12% Similarity=0.055 Sum_probs=107.0
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..+||.+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+.+..... ..... ..+....-.+.|...-
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~--~~~~~-------~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV--EGPTS-------TPCGECDSCVALAPGG 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc--cCCCC-------CCCcccHHHHHHHcCC
Confidence 4579999999999999987665 458899999999999999999887411 11100 0000011111111100
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHH-----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHH
Q 003317 232 GLCD-----NSWRSKSLEDKAVDIFRV-----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVC 298 (831)
Q Consensus 232 ~~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~ 298 (831)
.... +.......++... +.+. ..++.-++|||++... ..+..|...+-.-...+.+| +||....+.
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0000 0001112222221 2211 2345558899999754 33444444443333344444 555544454
Q ss_pred hh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 299 GA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 299 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
.. ......|++..++.++....+.+.+...... .-.+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 32 2345789999999999988888876544321 22445678899999988433
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00036 Score=79.91 Aligned_cols=200 Identities=14% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE-eCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV-VSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~ 230 (831)
..++|.+..+..+.+.+..+.+ ..+.++|+.|+||||+|+.+.+... -...++.-.|.. +...+......+.+...
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~--c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN--CQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC--CCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 5679999999999998877665 4588999999999999999998874 111111011111 00111111222222111
Q ss_pred hCCCC---CCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEE-EEcCChhHHhh
Q 003317 231 IGLCD---NSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVV-FTTRFVEVCGA 300 (831)
Q Consensus 231 l~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~ 300 (831)
-.... +.......++....+... ..+++-++|+|++.... ....+...+-.-...+.+| +|++...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 10000 000111223333222111 23455588999986542 3444444443323344444 45554444322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITI 357 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~ 357 (831)
......+++.+++.++....+.+.+..... .-..+.++.|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 334578999999999988888777654331 1224668889999999654 44443
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.00034 Score=72.93 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
..+.++|++|+||||+|+.+++... ..+.-...-|+.++. .++ ...... .........+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~--~~g~~~~~~~~~v~~----~~l----~~~~~g-------~~~~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY--KLGYIKKGHLLTVTR----DDL----VGQYIG-------HTAPKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCCCCCceEEecH----HHH----HHHHhc-------cchHHHHHHHHHc-
Confidence 4588999999999999999988753 112111122444442 222 222111 0111111222221
Q ss_pred cCCcEEEEEcCCCCc-----------ccccccccCCCCCCCCcEEEEEcCChhHHhhc--------cCCceEEcCCCChH
Q 003317 255 SKKKFVLLLDDMWKR-----------VDLTQLGVPLPSPTTASKVVFTTRFVEVCGAM--------KAHEYFKVECLAHE 315 (831)
Q Consensus 255 ~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~ 315 (831)
..-+|++|++... +....+...+.....+.+||+++....+.... .....+.+++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2348999998642 11122222233333456677777544332111 12357899999999
Q ss_pred HHHHHHHHHhhhc
Q 003317 316 KAWILFQEHVERQ 328 (831)
Q Consensus 316 e~~~Lf~~~~~~~ 328 (831)
|..+++...+...
T Consensus 200 el~~I~~~~l~~~ 212 (287)
T CHL00181 200 ELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887654
No 120
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.0003 Score=79.93 Aligned_cols=197 Identities=13% Similarity=0.090 Sum_probs=110.9
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++..... ...+ + ..++.....+.|...-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~--~~~~---~----~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA--QGPT---A----TPCGVCESCVALAPNG 83 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc--cCCC---C----CcccccHHHHHhhccc
Confidence 56799999999999999887655 57899999999999999999876411 1000 0 0001111111111100
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHH-----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE-EEEEcCChhHH
Q 003317 232 GLCD-----NSWRSKSLEDKAVDIFRV-----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK-VVFTTRFVEVC 298 (831)
Q Consensus 232 ~~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTtR~~~v~ 298 (831)
+... +.......++.. .+.+. ..+++=++|+|++... .....+...+-....... |++||....+.
T Consensus 84 ~~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000 000111122221 11111 1245568999998753 334444333433233444 44565555544
Q ss_pred hh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHHHHhc
Q 003317 299 GA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIGRAMA 362 (831)
Q Consensus 299 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~l~ 362 (831)
.. ......+++.+++.++..+.+.+.+...... -..+....|++.++|.+- |+..+-.++.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 32 3335789999999999988888877654321 224567888999999774 5555544443
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00036 Score=80.59 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=109.5
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++... ...... ....++.....+.|....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~--c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN--CTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCCC------CCCCCccCHHHHHHhcCC
Confidence 5679999999999988877654 5678999999999999999998763 111000 001111222333333221
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcC-ChhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTR-FVEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~ 300 (831)
.... +.......++.. .+.+.+ .+++-++|+|++... ...+.+...+......+.+|++|. ...+...
T Consensus 88 ~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 1100 000111222221 222222 245668999998643 334444433333233455555554 3333322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
......+.+..++.++....+.+.+...... --.+.+..|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2234578899999999998888877654321 2246688999999998865443
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=9.1e-05 Score=80.02 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQD 225 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 225 (831)
..+++.+...+.+...|.. .+.|.++|++|+|||++|+.+++... ....|+.+.||.+++.++..+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~--~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLT--GEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhc--CCcccceeeEEeecccccHHHHhc
Confidence 4567888899999988864 46788899999999999999999875 446788999999999888777654
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00042 Score=79.76 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=106.3
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|.+..+..+.+++..+. .+.+.++|+.|+||||+|+.+++..-... .... .......... .
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~-~~~~----------~~pC~~C~~~---~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSH-KTDL----------LEPCQECIEN---V 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccc-cCCC----------CCchhHHHHh---h
Confidence 457999999999999997765 45678999999999999999988763110 0000 0000000000 0
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE-EEEEcCChhHH
Q 003317 232 GLCD-----NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK-VVFTTRFVEVC 298 (831)
Q Consensus 232 ~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTtR~~~v~ 298 (831)
+.+. +.......++ ++.+.+.+ .+++-++|+|++... ..+..+...+-....... |++||+...+.
T Consensus 84 ~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred cCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000 0000111222 12222222 256669999998653 234444333322222334 45566555554
Q ss_pred hh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 003317 299 GA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIG 358 (831)
Q Consensus 299 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 358 (831)
.. ......+++.+++.++....+...+...... .-.+.+..|++.++|.+. |+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 3335689999999999998888876544311 124557889999999764 444433
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00028 Score=84.50 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=100.1
Q ss_pred CCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCC-CCCEEEE-EEeCCCCCHHHHHHHHH
Q 003317 152 IEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKD-DFDVVIW-VVVSKDLKIERIQDDIW 228 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~-~F~~~~w-v~~s~~~~~~~~~~~i~ 228 (831)
.++++||+.++.+++..|......-+.++|++|+||||+|+.+++..... +.. -.+..+| +.++.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 36789999999999999988777788899999999999999999986311 111 1122333 222210
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc------cccc---cccCCCCCCCC-cEEEEEcCChh
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV------DLTQ---LGVPLPSPTTA-SKVVFTTRFVE 296 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~---l~~~l~~~~~g-s~ilvTtR~~~ 296 (831)
.... . .....++....+.+.+. +++.+|++|++.... .-.+ +..+ .-..| -++|-||...+
T Consensus 255 ---~ag~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 ---QAGA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAE 327 (852)
T ss_pred ---hccc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHH
Confidence 0000 0 01112222222222222 468999999986431 1111 2222 22233 45555555432
Q ss_pred HHh-------hccCCceEEcCCCChHHHHHHHHHHhhhccc-CCCCChHHHHHHHHHHhCCCc
Q 003317 297 VCG-------AMKAHEYFKVECLAHEKAWILFQEHVERQTL-ESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 297 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 351 (831)
... .......+.+++++.++..+++......-.. ....-..+....+++.+.+..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 211 1112358999999999999997544322110 111122445566667666543
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00021 Score=79.32 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..-+.|+|.+|+|||+|++.+++... ..+. ..++|++ ..++..++...+.. ...+ .+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~---~~~~~~~v~yi~------~~~f~~~~~~~~~~-------~~~~----~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYIT------SEKFLNDLVDSMKE-------GKLN----EFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH---HhCCCCeEEEEE------HHHHHHHHHHHHhc-------ccHH----HHHH
Confidence 45699999999999999999999875 2222 2566664 34566666666532 1122 2333
Q ss_pred HHcCCcEEEEEcCCCCcc---cc-cccccCCCC-CCCCcEEEEEcC-ChhH--------HhhccCCceEEcCCCChHHHH
Q 003317 253 VLSKKKFVLLLDDMWKRV---DL-TQLGVPLPS-PTTASKVVFTTR-FVEV--------CGAMKAHEYFKVECLAHEKAW 318 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~ 318 (831)
.++.+.-+|++||+.... .+ +.+...+.. ...|..||+||. ...- ..++.....+.+++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 333455689999997431 11 122211211 123456888875 3221 122344557899999999999
Q ss_pred HHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 319 ILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 319 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
.++.+.+...... --.++..-|++.+.|..-.+
T Consensus 270 ~IL~~~~~~~~~~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 270 KIARKMLEIEHGE---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHhcCCC---CCHHHHHHHHhccccCHHHH
Confidence 9999887643322 22567888888888765444
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00068 Score=75.91 Aligned_cols=179 Identities=14% Similarity=0.192 Sum_probs=106.5
Q ss_pred CCcccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHHhhhhccCCC----------------CC-EEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENVG-IIGLYGMGGVGKTTLLTQINNKFLDSRKDD----------------FD-VVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~----------------F~-~~~wv~~ 214 (831)
+.++|-+..++.+...+..+..+ ++.++|+.|+||||+|+.+.+..-...... +. .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 56799999999999999777655 668999999999999999988753100001 00 1111211
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEE
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKV 288 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i 288 (831)
+.. ...++....+... ..+++-++|+|++.... ....+...+-.....+++
T Consensus 94 as~-----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 94 ASN-----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ccc-----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 111 1122222222110 11445589999997542 233343333222334555
Q ss_pred EEEcCCh-hHHh-hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 289 VFTTRFV-EVCG-AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 289 lvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
|++|.+. .+.. .......+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+.-+...
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 6555443 2221 1223468999999999999988887765442 122567889999999988655443
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.83 E-value=0.00021 Score=71.67 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEE-EEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVI-WVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..+.-+.+.+.....++...+|++|.|||+-|..++...- -...|.+.+ =.++|...... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~--~~~~~~~rvl~lnaSderGis-vvr~----- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN--CEQLFPCRVLELNASDERGIS-VVRE----- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc--Cccccccchhhhccccccccc-chhh-----
Confidence 55789999999999999888899999999999999999999998875 235565443 23444432221 0000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH--cCCcE-EEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHhhc-cCC
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVL--SKKKF-VLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCGAM-KAH 304 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~~-~~~ 304 (831)
...+.+.+........ ..++| .+|||+++.. +.|..+...+-+....++.| ||+--..+.... ...
T Consensus 108 -------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 108 -------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred -------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0111111111110000 01343 7899999764 56877766555444445544 444433332221 223
Q ss_pred ceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc-hHHHH
Q 003317 305 EYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP-LALIT 356 (831)
Q Consensus 305 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~ 356 (831)
..|+.++|.+++...-++..+..++... ..+..+.|++.++|.- -|+.+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 5789999999999999988887665332 2456788999999854 34433
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00063 Score=78.41 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=107.9
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhc-------------------cCCCCCEEEEE
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDS-------------------RKDDFDVVIWV 212 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~~~F~~~~wv 212 (831)
+.++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+..... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 5679999999999999987765 458899999999999999988875310 0112332 122
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-
Q 003317 213 VVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV- 289 (831)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il- 289 (831)
..+....+.+ .++++.++.... ..+++=++|+|++... ..+..+...+......+.+|
T Consensus 96 d~~~~~~vd~-Ir~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDD-IRNLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHH-HHHHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2221111111 112222221100 1234558899998654 33444544443333345554
Q ss_pred EEcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 290 FTTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 290 vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
+||+...+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 45554544332 2345689999999999999998877654422 22356788999999976543
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00061 Score=75.80 Aligned_cols=183 Identities=14% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccC-------------------CCCCEEEEE
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRK-------------------DDFDVVIWV 212 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~~F~~~~wv 212 (831)
+.++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+....... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 5679999999999999977665 56889999999999999999887631100 0111 1111
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEE
Q 003317 213 VVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVF 290 (831)
Q Consensus 213 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 290 (831)
.......+.+ .+++.+.+.. .-..+++-++|+|++... .....+...+-.......+|+
T Consensus 96 ~g~~~~gid~-ir~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 96 DGASHRGIED-IRQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eccccCCHHH-HHHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 1101111111 1111111100 011256678899998643 223334333433233555555
Q ss_pred Ec-CChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 003317 291 TT-RFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIG 358 (831)
Q Consensus 291 Tt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 358 (831)
+| +...+... ......+++.++++++....+.+.+..... .-..+.+..|++.++|.+. |+..+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55 33333222 223467899999999998888877654331 1224567889999999764 444433
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.0002 Score=76.74 Aligned_cols=145 Identities=12% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++... .. ...++.+. .... ..++.+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~----~~---~~~i~~~~-~~~~-~i~~~l~~~ 91 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG----AE---VLFVNGSD-CRID-FVRNRLTRF 91 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----cc---ceEeccCc-ccHH-HHHHHHHHH
Confidence 5679999999999999877654 5666799999999999999988753 22 22333333 1211 111111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--cc-ccccccCCCCCCCCcEEEEEcCChh-HHh-hccCCce
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VD-LTQLGVPLPSPTTASKVVFTTRFVE-VCG-AMKAHEY 306 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~~~ 306 (831)
... ..+.+.+-++|+||+... .+ ...+...+.....++++|+||.... +.. .......
T Consensus 92 ~~~-----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 92 AST-----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHh-----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 000 001134558899999654 11 1222222222345678888886543 111 1122346
Q ss_pred EEcCCCChHHHHHHHHH
Q 003317 307 FKVECLAHEKAWILFQE 323 (831)
Q Consensus 307 ~~l~~L~~~e~~~Lf~~ 323 (831)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77778888887766654
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.82 E-value=0.00024 Score=84.41 Aligned_cols=156 Identities=17% Similarity=0.273 Sum_probs=90.6
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDDF-DVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
++++||++++++++..|......-+.++|++|+|||++|+.+++..... +...+ +..+|. + +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 5789999999999999987777778899999999999999999986311 11112 334442 1 11111 110
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc----------ccccc-ccCCCCCCCC-cEEEEEcCChhH
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV----------DLTQL-GVPLPSPTTA-SKVVFTTRFVEV 297 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~l-~~~l~~~~~g-s~ilvTtR~~~v 297 (831)
.. .....++....+.+.+ +.++.+|++|++.... +...+ ...+ ..| -++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHH
Confidence 00 0112333334444433 3468899999986321 11112 2222 223 344444443221
Q ss_pred Hh------h-ccCCceEEcCCCChHHHHHHHHHHhh
Q 003317 298 CG------A-MKAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 298 ~~------~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
.. . ......+.++.++.++..+++.....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 10 0 11235789999999999999987653
No 132
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=6.7e-06 Score=81.33 Aligned_cols=96 Identities=26% Similarity=0.245 Sum_probs=61.7
Q ss_pred EEEeccccccccCCC----CCCCCcccccccC-----cCccchhhhcCCcccEEeccCCCC---CCCCChhhhcCCccCc
Q 003317 519 KISLMQNQIRNLPFT----PICPDLQTLFLKG-----INELPRELKALVNLKYLNLDHTTF---LHPIPSPLISSFSMLL 586 (831)
Q Consensus 519 ~L~l~~~~i~~lp~~----~~~~~Lr~L~L~~-----~~~lp~~i~~L~~Lr~L~L~~~~~---l~~lp~~~i~~L~~L~ 586 (831)
.+.+.++.|...... ..+.+++.|||.+ ..++-..+.+|++|++|+|+.|.. |..+| ..+.||+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceE
Confidence 555666666554333 5788888888876 333444557899999999998842 22222 2446899
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeec
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLH 624 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~ 624 (831)
+|-+.++...+ ...-..+..|+.++.|.++.+
T Consensus 125 ~lVLNgT~L~w------~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSW------TQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCCh------hhhhhhhhcchhhhhhhhccc
Confidence 99998887665 233445666666666666544
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00076 Score=77.71 Aligned_cols=194 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|.+..+..+.+++..+. .+.+.++|+.|+||||+|+.+++..... ..+.. ....+......+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~---~~~~~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL---NSDKP----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC---CcCCC----CCCCCcccHHHHHHhcCC
Confidence 567999999999999987765 3688899999999999999999987411 11000 001111222333332221
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHhh-
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRV----LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCGA- 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~- 300 (831)
.... +.......++..+.+... ..+++-++|+|++... ..+..+...+-.......+| +|+....+...
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1100 000112222222222111 1245568899999754 23444444443322334444 45543334322
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
......+++..++.++....+.+.+...... --.+.+..|++.++|.+..+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2234678889999999888887776553311 1235678999999998765443
No 134
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.80 E-value=0.0001 Score=80.69 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=96.9
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+.+.|++..++++.+.+.. ...+.|.++|++|+|||++|+.+++... ..| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~----~~~-----i~v~~--- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATF-----IRVVG--- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC----CCE-----EEeeh---
Confidence 3467999999998876521 2456799999999999999999998864 232 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc------------c----ccccccCCC--
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV------------D----LTQLGVPLP-- 280 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~-- 280 (831)
.++ ..... .. .......+.+.. ...+.+|+|||++... . ...+...+.
T Consensus 199 -~~l----~~~~~-------g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 -SEL----VQKFI-------GE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred -HHH----hHhhc-------cc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 11110 01 112222222222 3467899999996421 0 111111111
Q ss_pred CCCCCcEEEEEcCChhHH-hhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 281 SPTTASKVVFTTRFVEVC-GAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 281 ~~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....+..||.||...+.. ..+ .....+.++..+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 112345677777654321 111 1245789999999999999998876543222223 355667777654
No 135
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0021 Score=68.34 Aligned_cols=199 Identities=13% Similarity=0.128 Sum_probs=120.2
Q ss_pred CCCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 152 IEPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
++..+||+.+++.+.+++.. ...+.+-|.|-+|.|||.+...++.+.... ..-.+++++++..-.....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~--~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS--SKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh--cccceeEEEeeccccchHHHHHHH
Confidence 46679999999999988854 467889999999999999999999997521 111356777776655677777777
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCC--cEEEEEcCCCCcc--cccccccCCC-CCCCCcEEEEEcC-C-hhH---
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKK--KFVLLLDDMWKRV--DLTQLGVPLP-SPTTASKVVFTTR-F-VEV--- 297 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~ilvTtR-~-~~v--- 297 (831)
...+-.... ......+....+..+..+. .+|+|+|.++... .-..+...|. ..-+++++|+.-- + -+.
T Consensus 227 ~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 227 FSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 776611110 1122255566666666553 5899999986421 1111111111 1124555543221 1 111
Q ss_pred -Hhh-----ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 298 -CGA-----MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 298 -~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
... ......+...+.+.++-.++|..+..... .........+-+++||.|.-=-++.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHHH
Confidence 111 12245778899999999999999876543 2233334455566666554433333
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.79 E-value=0.00015 Score=72.13 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~----~-----~~~~--~~~~----------------------~-~-------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN----A-----YIIK--DIFF----------------------N-E-------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC----C-----EEcc--hhhh----------------------c-h-------hHH
Confidence 6799999999999999999877643 1 1111 0000 0 0 011
Q ss_pred cCCcEEEEEcCCCCcccccccccCCC-CCCCCcEEEEEcCChh-------HHhhccCCceEEcCCCChHHHHHHHHHHhh
Q 003317 255 SKKKFVLLLDDMWKRVDLTQLGVPLP-SPTTASKVVFTTRFVE-------VCGAMKAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
+..-++++||+....+ ..+...+. -...|..||+|++... ...++...-.+++++++.++-..++.+.+.
T Consensus 84 -~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 -EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1234788999963221 11111111 0135678999888432 233444566899999999998888888776
Q ss_pred hcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 327 RQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 327 ~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
..... --+++.+-|++.+.|.--.+
T Consensus 162 ~~~l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSVT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCCC---CCHHHHHHHHHHccCCHHHH
Confidence 43211 22567778888887755444
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00094 Score=74.81 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=104.7
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccC-----------------CCCCEEEEEEe
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRK-----------------DDFDVVIWVVV 214 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~F~~~~wv~~ 214 (831)
..++|.+..+..+.+++..+.. +.+.++|+.|+||||+|+.++........ +.|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4579999999999999977654 45678999999999999999887531000 00111122211
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE
Q 003317 215 SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK 287 (831)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 287 (831)
+.. ...++ .+.+.+.+ .+++-++|+|++... .....+...+........
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111 11111 11222222 345669999998654 233344333332223344
Q ss_pred EE-EEcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 288 VV-FTTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 288 il-vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
+| .||+...+... ......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 45554444322 2234578999999999988888877654321 22456778889999977654433
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00047 Score=76.34 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
..-+.|+|+.|+|||+|++.+++... .....+++++ ...+...+...+... . ...++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~----~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR----ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH----HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHH
Confidence 35689999999999999999999875 1223345553 344555555555311 1 1233443
Q ss_pred HcCCcEEEEEcCCCCccc----ccccccCCCC-CCCCcEEEEEcCCh---------hHHhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKRVD----LTQLGVPLPS-PTTASKVVFTTRFV---------EVCGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
++ ..-+|++||+..... .+.+...+.. ...|..||+||... .+..++.....+.+.+++.++-..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 43 344888899865321 1122221110 12356788887542 223334445688999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCC
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGL 350 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 350 (831)
++.+++...... --.++..-|++.+.|.
T Consensus 279 iL~~k~~~~~~~---l~~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIR---IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHhcCCC
Confidence 999888654321 1245566677766654
No 139
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=1.8e-05 Score=61.32 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=50.0
Q ss_pred CcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeec
Q 003317 558 VNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLH 624 (831)
Q Consensus 558 ~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~ 624 (831)
++|++|++++| .+..+|.+++.++++|++|++++|.+..+ ....+..+++|+.|+++.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEeCcCC
Confidence 47999999999 89999988899999999999999988773 3456778888888887654
No 140
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00052 Score=77.41 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
...+.|+|..|+|||.|++.+++... ....-..++++ +..++..++...+.. ... ..+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~--~~~~g~~V~Yi------taeef~~el~~al~~-------~~~----~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR--RLYPGTRVRYV------SSEEFTNEFINSIRD-------GKG----DSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEe------eHHHHHHHHHHHHHh-------ccH----HHHHHH
Confidence 34589999999999999999999875 11122345666 345555555554421 111 223333
Q ss_pred HcCCcEEEEEcCCCCc---cccc-ccccCCCC-CCCCcEEEEEcCCh---------hHHhhccCCceEEcCCCChHHHHH
Q 003317 254 LSKKKFVLLLDDMWKR---VDLT-QLGVPLPS-PTTASKVVFTTRFV---------EVCGAMKAHEYFKVECLAHEKAWI 319 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 319 (831)
+++ -=+|||||+... ..|. .+...+.. ...|..|||||+.. .+...+...-.+.+...+.+.-..
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 333 347889999643 1222 22222211 12356688888742 234455567789999999999999
Q ss_pred HHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 320 LFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 320 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
++.+++....... -.++..-|++.+.+..-.+
T Consensus 454 IL~kka~~r~l~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 454 ILRKKAVQEQLNA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHHhccCCHHHH
Confidence 9999886543222 2566777777777654433
No 141
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0068 Score=68.12 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=93.8
Q ss_pred CCcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
.+.+|.++.+++|++.|.- -.-+++++||++|+|||+|++.+++... ..| +-++++.-.|..++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~----Rkf---vR~sLGGvrDEAEIR-- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG----RKF---VRISLGGVRDEAEIR-- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC----CCE---EEEecCccccHHHhc--
Confidence 4568999999999998832 2568999999999999999999999875 444 344555555544432
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---------cccccccC-----CCC-----CCCCcE
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---------DLTQLGVP-----LPS-----PTTASK 287 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~~-----l~~-----~~~gs~ 287 (831)
++....-..-....++.++. .+.+.-+++||.++... .+.++..| |.+ .-.=|+
T Consensus 394 ------GHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 394 ------GHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ------cccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 11111111111222222222 24567899999987431 11122111 111 001255
Q ss_pred EE-EEcCCh-h-H-HhhccCCceEEcCCCChHHHHHHHHHHh
Q 003317 288 VV-FTTRFV-E-V-CGAMKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 288 il-vTtR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
|+ |||-|. + + +..++...++++.+.+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 54 455542 2 2 2334455799999999999888877775
No 142
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.1e-05 Score=93.41 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=77.6
Q ss_pred cceeEEEeccccccc--cCC--CCCCCCcccccccC----cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 515 KGVRKISLMQNQIRN--LPF--TPICPDLQTLFLKG----INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~--lp~--~~~~~~Lr~L~L~~----~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
.++++|++++...-. .|. ...+|.|++|.+.+ ..++-.-..++++|+.||+|+| .++.+ .+ |++|.|||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHH
Confidence 578888887754321 111 16799999999998 3334445578999999999999 78888 44 99999999
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
+|.+.+-.+.. ...+.+|-+|++|+.|+++...
T Consensus 199 ~L~mrnLe~e~------~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFES------YQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCc------hhhHHHHhcccCCCeeeccccc
Confidence 99998766654 2467788999999999998544
No 143
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.70 E-value=0.00028 Score=77.33 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=94.8
Q ss_pred CcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 154 PTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++.|.+..+++|.+.+.- ...+.|.++|++|+|||++|+.+++... ..|-. +..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----~~fi~---V~~se---- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----ATFLR---VVGSE---- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----CCEEE---Eecch----
Confidence 346888888888776621 2456788999999999999999999864 44421 21111
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----------------ccccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----------------LTQLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 282 (831)
+. ... ...........+.....+.+.+|+||+++.... ...+...+. ..
T Consensus 253 --L~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 --LI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 111 011111122222223346788999999753210 001111111 11
Q ss_pred CCCcEEEEEcCChhHHhh-c----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 283 TTASKVVFTTRFVEVCGA-M----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
..+.+||.||...+.... + .....+.+...+.++..++|..++.........++ ..++..+.|.-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 235677777775443222 1 12457899999999999999987755432222333 44555665543
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=9.4e-06 Score=90.18 Aligned_cols=83 Identities=25% Similarity=0.317 Sum_probs=50.3
Q ss_pred cccccceeEEEeccccccccCC-CCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 511 IERWKGVRKISLMQNQIRNLPF-TPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~-~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
+..++++..+++.+|.+..+.. ...+++|++|++++ |..+. .+..|..|+.|++++| .+..++. +..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~--~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDISG--LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhccC--Cccchhhhc
Confidence 4455677777777777776666 46666666666665 33332 2444555666666666 4555554 455666666
Q ss_pred eeeccccCCC
Q 003317 588 LRMFNCKSSS 597 (831)
Q Consensus 588 L~l~~~~~~~ 597 (831)
+++++|.+..
T Consensus 167 l~l~~n~i~~ 176 (414)
T KOG0531|consen 167 LDLSYNRIVD 176 (414)
T ss_pred ccCCcchhhh
Confidence 6666665554
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0017 Score=73.91 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=107.6
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcc-CCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSR-KDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
..++|-+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...... ...+.| +. ....+.|...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC------~~----C~~C~~i~~~ 85 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC------GE----CSSCKSIDND 85 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC------cc----chHHHHHHcC
Confidence 5679999999999999977654 4688999999999999999998864110 000110 00 0011111110
Q ss_pred hCCC---CCCCCCCCHHHHHHHH---HH-HHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEc-CChhHHhh
Q 003317 231 IGLC---DNSWRSKSLEDKAVDI---FR-VLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTT-RFVEVCGA 300 (831)
Q Consensus 231 l~~~---~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~ 300 (831)
-... -+.......++..... .. -..+++-++|+|++... ..+..+...+......+.+|++| ....+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 0000112222222111 11 12355668999998654 23444544443333445555554 43334322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
......+++.+++.++....+.+.+..... +--.+.+..|++.++|.+..+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 223457899999999998888887754431 22356678899999998754433
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.9e-05 Score=78.18 Aligned_cols=196 Identities=17% Similarity=0.142 Sum_probs=110.9
Q ss_pred ccceeEEEeccccccccCCC----CCCCCcccccccC------cCccchhhhcCCcccEEeccCCCCCC--CCChhhhcC
Q 003317 514 WKGVRKISLMQNQIRNLPFT----PICPDLQTLFLKG------INELPRELKALVNLKYLNLDHTTFLH--PIPSPLISS 581 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~----~~~~~Lr~L~L~~------~~~lp~~i~~L~~Lr~L~L~~~~~l~--~lp~~~i~~ 581 (831)
..+++.++|.+|.|...... .++|+|++|+++. |+.+| ..+++|++|-|.|+. +. .... .+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s-~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTS-SLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhh-hhhc
Confidence 46788899999988775443 7899999999997 56666 367799999999983 32 2222 4678
Q ss_pred CccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccc
Q 003317 582 FSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSL 661 (831)
Q Consensus 582 L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l 661 (831)
++.++.|+++.|.+..+.. +...++... +.+.++....+..........+....+++..+-+..+.-.+.......
T Consensus 145 lP~vtelHmS~N~~rq~n~--Dd~c~e~~s--~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNL--DDNCIEDWS--TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred chhhhhhhhccchhhhhcc--ccccccccc--hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 8888999998885443200 111111110 112222222222211222222333344566666655531111111133
Q ss_pred cCCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCCCc-------ccccCCCceEE
Q 003317 662 GELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-------LALAPNVRNIG 722 (831)
Q Consensus 662 ~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~ 722 (831)
..++.+..|++..++... ...+.+. .|+.|..|.+.+.+-+..+.. ++.+++++.|+
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln----~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALN----GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHc----CCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 445666667777665544 2233333 488888888888776555431 45677777775
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.65 E-value=0.0002 Score=77.89 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
.++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++... ..|- .+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~----~~fi---~i~--~--- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT----ATFI---RVV--G--- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----CCEE---EEe--h---
Confidence 345788888888777652 1 2467899999999999999999998754 3332 111 1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc------------c----ccccccCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV------------D----LTQLGVPLP--S 281 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 281 (831)
..+ ..... ..........+.......+.+|++|+++... . +..+...+. .
T Consensus 213 -s~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 -SEF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred -HHH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111 11110 1111122222223334678999999976320 0 111111111 1
Q ss_pred CCCCcEEEEEcCChhHH-hhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch
Q 003317 282 PTTASKVVFTTRFVEVC-GAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL 352 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 352 (831)
...+..||.||...+.. ..+ .-...+.++..+.++..++|...........+.+ ..++++.+.|..-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 22356677777754332 111 2245688999999998888887765443222233 3455666766543
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0015 Score=69.98 Aligned_cols=258 Identities=17% Similarity=0.167 Sum_probs=140.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD--VVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
....+.|+|..|.|||.|++++.+... .... .++++ +......+++..+.. .....+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~----~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL----ANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH----hhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHH
Confidence 478999999999999999999999975 3333 34444 344455555544421 223445
Q ss_pred HHHHcCCcEEEEEcCCCCccc---cc-ccccCCCC-CCCCcEEEEEcCC---------hhHHhhccCCceEEcCCCChHH
Q 003317 251 FRVLSKKKFVLLLDDMWKRVD---LT-QLGVPLPS-PTTASKVVFTTRF---------VEVCGAMKAHEYFKVECLAHEK 316 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~~~~---~~-~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~e 316 (831)
++.. .-=++++||++.... |+ ++...|.. ...|..||+|++. +.+..++...-.+.+.+.+.+.
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 5555 333888999975322 22 22222211 1234489999963 2334556667789999999999
Q ss_pred HHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC----CchHHHHHHHH-hccC--CChhHHHHHHHHHhcccCCCCCchh
Q 003317 317 AWILFQEHVERQTLESHPDIPELAETVTKECGG----LPLALITIGRA-MACK--KQPEDWKYAIQVLRRSASEFPGMDE 389 (831)
Q Consensus 317 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G----lPlai~~~~~~-l~~~--~~~~~w~~~l~~l~~~~~~~~~~~~ 389 (831)
...++.+++.......++ ++..-|++.... +.-|+..+..+ +..+ -+...-+.++..+...... -..++
T Consensus 249 r~aiL~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-itie~ 324 (408)
T COG0593 249 RLAILRKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITIED 324 (408)
T ss_pred HHHHHHHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CCHHH
Confidence 999999987655433332 333333333322 22222222111 1111 2333333444333222111 11112
Q ss_pred hhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHhcccccccCCCe
Q 003317 390 VYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYIIGVVLHSCLLEEAGNDW 469 (831)
Q Consensus 390 ~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~ 469 (831)
|..+.. .| |.|+.+++.. =-....-....++|....++|.+.||.+.+..-.
T Consensus 325 I~~~Va-~~---------------------y~v~~~dl~s------~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg 376 (408)
T COG0593 325 IQKIVA-EY---------------------YNVKVSDLLS------KSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG 376 (408)
T ss_pred HHHHHH-HH---------------------hCCCHHHhhc------cccccccchHHHHHHHHHHHHccCcHHHHHHHhC
Confidence 221111 11 2233332211 0000111456777887889999999988874444
Q ss_pred EEeCHHHHHHHHHHHhh
Q 003317 470 VKMHDVIRDMALWIATE 486 (831)
Q Consensus 470 ~~mHdlv~d~a~~~~~~ 486 (831)
+=|.-|-.-.+.+...
T Consensus 377 -rdHtTV~~a~~kI~~~ 392 (408)
T COG0593 377 -RDHTTVLHAVRKIEQL 392 (408)
T ss_pred -CCccHHHHHHHHHHHH
Confidence 7788777777766654
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0016 Score=68.84 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=109.8
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhcc-----------CCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSR-----------KDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+..+.+ +.+-++|+.|+||+++|..+.+..-... .....-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4578999999999999987764 8999999999999999999988763111 111222344432100000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-----CCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS-----KKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTR 293 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR 293 (831)
..+-...+...+...........++ ++.+.+.+. +++=++|+|++.... ....+...+-.-.++.-|++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 0011111112111000001122222 233444443 456689999986542 23333322321123344555555
Q ss_pred ChhHHh-hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 294 FVEVCG-AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 294 ~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
...+.. ..+....+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 444433 233457899999999999999987643211 111236788999999976544
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0027 Score=73.02 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=107.2
Q ss_pred CCcccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..+..+.+.+..+.+ +.+.++|+.|+||||+|+.+++.... ....+ ...++.....++|...-
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c--~~~~~-------~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC--EQGLT-------AEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC--CCCCC-------CCCCCccHHHHHHhcCC
Confidence 5679999999999999877765 56789999999999999999888631 11100 00001111111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEE-EEcCChhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVV-FTTRFVEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~ 300 (831)
.... +.......++. +.+.+.+ .+++-++|+|++.... ....+...+-.....+.+| +||....+...
T Consensus 87 ~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 00011112221 2222222 2344589999986542 2333433332222344444 56555555432
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc-hHHHHHHHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP-LALITIGRA 360 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~ 360 (831)
......+++.+++.++....+...+...... --.+....|++.++|.. .|+..+-.+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2334678999999999888887776544311 22456788999999966 455554333
No 151
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.60 E-value=0.005 Score=73.85 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=38.3
Q ss_pred CCcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.+..++.|.+++.. ...+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999998886631 2446899999999999999999999864
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00035 Score=84.17 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=90.7
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDDF-DVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
.+++||+++++++++.|......-+.++|++|+|||++|+.++...... +.... +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 5689999999999999987777777899999999999999999886411 11111 244442 1 222111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc---------cccccccCCCCCCCCcEEEEEcCChhHHh-
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV---------DLTQLGVPLPSPTTASKVVFTTRFVEVCG- 299 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~ilvTtR~~~v~~- 299 (831)
+.. -....++....+.+.+ ..++.+|++|++.... +...+..+.... ..-++|.+|..++...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKH 322 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHH
Confidence 100 1112333333333333 3568999999985321 111121111111 1245665665544321
Q ss_pred ------hccCCceEEcCCCChHHHHHHHHHHh
Q 003317 300 ------AMKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 300 ------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
.......+.+...+.++...++....
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 11123567889999999888887543
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.58 E-value=0.003 Score=62.45 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=40.8
Q ss_pred cCCCCCcccchHHHHHHHH----HhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 149 ERPIEPTVGLESTLDKVWS----CLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 149 ~~~~~~~vGr~~~~~~l~~----~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.+.+.++|.+..++.+++ ++.+....-+-++|..|+|||++++++.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 3334678999998888775 34445677888899999999999999999885
No 154
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=8.4e-05 Score=52.71 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred CcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCC
Q 003317 558 VNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 558 ~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
++|++|++++| .++.+|+. +++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCC
Confidence 47899999999 78899885 8999999999999998776
No 155
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0013 Score=71.98 Aligned_cols=164 Identities=19% Similarity=0.159 Sum_probs=97.0
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 003317 158 LESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS 237 (831)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 237 (831)
|.....++.+.+..... ++.|+|+-++||||+++.+..... +. .+++..-+......-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~----~~---~iy~~~~d~~~~~~~l~d~---------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL----EE---IIYINFDDLRLDRIELLDL---------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC----cc---eEEEEecchhcchhhHHHH----------
Confidence 33445556565544333 999999999999999977766653 22 4555433321111111111
Q ss_pred CCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHh-----h-ccCCceEEcCC
Q 003317 238 WRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCG-----A-MKAHEYFKVEC 311 (831)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-----~-~~~~~~~~l~~ 311 (831)
...+...-..++..++||.|....+|......+.+.++. +|++|+-+..... . .+....+.+.|
T Consensus 84 ---------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 84 ---------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred ---------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 111111112277899999999999999887777776666 8888888765422 1 23356789999
Q ss_pred CChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 312 LAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 312 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
||-.|...+-. .. ..+......-+-.-..||.|-++..
T Consensus 154 lSF~Efl~~~~-----~~--~~~~~~~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 154 LSFREFLKLKG-----EE--IEPSKLELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCHHHHHhhcc-----cc--cchhHHHHHHHHHHHhCCCcHHHhC
Confidence 99999766543 00 0000111122223356888877644
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.0012 Score=75.00 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=93.2
Q ss_pred CCcccchHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCL---GE---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++++|.+..++++.+.+ .. ...+-+.++|++|+|||++|+.+++... .+| +.++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~----~~~-----~~i~~---- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----VPF-----FSISG---- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----CCe-----eeccH----
Confidence 34678877776655443 21 2345688999999999999999998754 232 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc------------ccc----ccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV------------DLT----QLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~~----~l~~~l~--~~ 282 (831)
.++. ... ...........+.......+.+|++||++... .+. .+...+. ..
T Consensus 122 ~~~~----~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 SDFV----EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHH----HHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111 111 01112223333333445677899999995421 011 1111111 12
Q ss_pred CCCcEEEEEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 283 TTASKVVFTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
..+-.||.||..... .+...-...+.+...+.++-.++|...+........ .....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 234455666654432 111123457889999998889999887654331111 12457788888743
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0041 Score=71.16 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=105.3
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.+.+++..+. .+.+.++|+.|+||||+|+.+.+.... ...-+ +..++.....+.|....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c--~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC--LNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC--CCCCC-------CCCCCccHHHHHHhcCC
Confidence 567999999999999987764 456778999999999999999887531 11000 01111111222221110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEE-EEEcCChhHHhh
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKV-VFTTRFVEVCGA 300 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i-lvTtR~~~v~~~ 300 (831)
.... +.......++. ..+.+.. .++.-++|+|++... ..+..+...+........+ +.||....+...
T Consensus 87 ~~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000 00011122211 1222221 345668899999754 2344443333222223344 445554444322
Q ss_pred -ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 301 -MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 301 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
......+++.+++.++....+...+...+.. --.+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 2234678899999999988888877654321 12456788899999877543
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.51 E-value=3.2e-05 Score=85.98 Aligned_cols=123 Identities=24% Similarity=0.240 Sum_probs=77.5
Q ss_pred cceeEEEeccccccccCC-CCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 515 KGVRKISLMQNQIRNLPF-TPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~-~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
..+..+++..|.+..+-. ...+.+|..|++.+ +..+...+..+.+|++|++++| .|..+.. +..|+.|+.|++.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheec
Confidence 344445566666665322 46778888888877 5555555677888888888888 6777775 7778888888888
Q ss_pred cccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc
Q 003317 592 NCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE 651 (831)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 651 (831)
+|.+.. +..+..|..|+.+++..+.+..++... ......++.+.+.++.
T Consensus 149 ~N~i~~---------~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISD---------ISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNS 197 (414)
T ss_pred cCcchh---------ccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCc
Confidence 887765 334444666666666666655554410 0112245555555543
No 159
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.49 E-value=0.00063 Score=70.33 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=103.2
Q ss_pred CCcccchHHHHHHHHHhcCCC---ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEEN---VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
..+.+|+..+..+..++.+.. .+.|.|+|-+|.|||.+.+++.+... . ..+|+++-..++.+.++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n----~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN----L---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC----C---cceeeehHHhccHHHHHHHHHH
Confidence 456799999999999886642 35568999999999999999998863 1 2589999999999999999999
Q ss_pred HhCCC-CCCCCC----CCHHHHHHHHHH--HHc--CCcEEEEEcCCCCccccccc--------ccCCCCCCCCcEEEEEc
Q 003317 230 KIGLC-DNSWRS----KSLEDKAVDIFR--VLS--KKKFVLLLDDMWKRVDLTQL--------GVPLPSPTTASKVVFTT 292 (831)
Q Consensus 230 ~l~~~-~~~~~~----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l--------~~~l~~~~~gs~ilvTt 292 (831)
+.+.. .++... .........+.+ ... ++.++||||+++...+.+.+ -..+ ..+...|+...
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~--~~~~i~iils~ 156 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL--NEPTIVIILSA 156 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh--CCCceEEEEec
Confidence 98622 211111 111222333333 122 45899999999764433322 1111 12233333322
Q ss_pred CC-hh-HHhhccCCc--eEEcCCCChHHHHHHHHHH
Q 003317 293 RF-VE-VCGAMKAHE--YFKVECLAHEKAWILFQEH 324 (831)
Q Consensus 293 R~-~~-v~~~~~~~~--~~~l~~L~~~e~~~Lf~~~ 324 (831)
-. +. ....+++.. ++..+.-+.+|-..++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21 11 222345444 4567888999988888653
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.49 E-value=0.00091 Score=80.51 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=42.4
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++++||+.++.+++..|.......+.++|++|+|||++|+.+.....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 67899999999999999887777788999999999999999998863
No 161
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0021 Score=70.35 Aligned_cols=168 Identities=17% Similarity=0.127 Sum_probs=96.3
Q ss_pred CcccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHH
Q 003317 154 PTVGLESTLDKVWSCLGE------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIE 221 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~ 221 (831)
++=|.+..+.++.+.+.. ...+-|.++|++|+|||.||++++++.. -. ++.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~----vP-----f~~isAp---- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG----VP-----FLSISAP---- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC----Cc-----eEeecch----
Confidence 445888888888877632 2567889999999999999999999975 23 3333332
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---cc----------cccccC---CCC-CCC
Q 003317 222 RIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---DL----------TQLGVP---LPS-PTT 284 (831)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~----------~~l~~~---l~~-~~~ 284 (831)
+|+... ...+++.+.+.+.+....-++++++|+++... +| .++... +.. ...
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 222222 23445555555555667789999999997421 11 111111 111 111
Q ss_pred CcEEEE---EcCChhHH---hhcc-CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC
Q 003317 285 ASKVVF---TTRFVEVC---GAMK-AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG 349 (831)
Q Consensus 285 gs~ilv---TtR~~~v~---~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 349 (831)
|-.||| |+|.+.+- +..+ -..-|.+.--++..-.+++...+.+-....+-++ ++|++..-|
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPG 394 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPG 394 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCC
Confidence 322333 66655442 2222 2345677777777777777776655443333343 344444444
No 162
>PLN03150 hypothetical protein; Provisional
Probab=97.47 E-value=0.00026 Score=82.57 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=42.9
Q ss_pred eeEEEeccccccc-cCCC-CCCCCcccccccC--c-CccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 517 VRKISLMQNQIRN-LPFT-PICPDLQTLFLKG--I-NELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 517 lr~L~l~~~~i~~-lp~~-~~~~~Lr~L~L~~--~-~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
++.|+|++|.+.. +|.. ..+++|+.|+|++ + ..+|..++.|++|++|+|++|.....+|.. +++|++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 5566666666543 3322 4555666666655 2 245555666666666666665322345543 5566666666666
Q ss_pred cccCC
Q 003317 592 NCKSS 596 (831)
Q Consensus 592 ~~~~~ 596 (831)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 55544
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.00069 Score=77.48 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCcccchHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEE-----NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.++|.++.++++..++... ..+++.|+|++|+||||+++.++....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 56799999999999888652 346799999999999999999998754
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00023 Score=76.07 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=47.7
Q ss_pred ccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCc
Q 003317 640 SCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVR 719 (831)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~ 719 (831)
.+++.|++++|. +..++ .+ .++|++|.+++|..++..++.+ +++|++|.+++|..+..+| ++|+
T Consensus 52 ~~l~~L~Is~c~-L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L------P~nLe~L~Ls~Cs~L~sLP-----~sLe 115 (426)
T PRK15386 52 RASGRLYIKDCD-IESLP--VL--PNELTEITIENCNNLTTLPGSI------PEGLEKLTVCHCPEISGLP-----ESVR 115 (426)
T ss_pred cCCCEEEeCCCC-CcccC--CC--CCCCcEEEccCCCCcccCCchh------hhhhhheEccCcccccccc-----cccc
Confidence 578889998873 44443 22 2479999999887766333333 4689999999987666554 4577
Q ss_pred eEEEec
Q 003317 720 NIGVST 725 (831)
Q Consensus 720 ~L~L~~ 725 (831)
.|+++.
T Consensus 116 ~L~L~~ 121 (426)
T PRK15386 116 SLEIKG 121 (426)
T ss_pred eEEeCC
Confidence 777754
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00057 Score=73.16 Aligned_cols=62 Identities=19% Similarity=0.358 Sum_probs=36.9
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC---cCccchhhhcCCcccEEeccCCCCCCCCCh
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG---INELPRELKALVNLKYLNLDHTTFLHPIPS 576 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~ 576 (831)
+..+.++++|++++|.+..+|.. .++|+.|.+++ +..+|..+ ..+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 34457788899998888777632 22466666655 33344433 13566666666655555554
No 166
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.43 E-value=0.0033 Score=74.58 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=86.0
Q ss_pred CCcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
...+|.++.+++|+++|.. ....++.++|++|+||||+|+.++.... ..|-. +..+...+..++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~----~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG----RKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEE---EEcCCCCCHHHhccc
Confidence 4568999999999988752 2456899999999999999999998754 33322 334443343332211
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc------ccccccCCC---------------CCCCC
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD------LTQLGVPLP---------------SPTTA 285 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~---------------~~~~g 285 (831)
-....+ .........+... ....-+++||+++.... ...+...+. ..-..
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 1111222223221 22344788999864211 011111110 01122
Q ss_pred cEEEEEcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHh
Q 003317 286 SKVVFTTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 286 s~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
.-+|.|+....+... .+....+++.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 333445543333211 2233578999999999888887766
No 167
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00012 Score=51.92 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=29.1
Q ss_pred CCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCCh
Q 003317 537 PDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPS 576 (831)
Q Consensus 537 ~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~ 576 (831)
++|++|++++ ++.+|..+++|++|++|++++| .++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3556666665 6677888999999999999999 6777764
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.43 E-value=0.00091 Score=80.84 Aligned_cols=157 Identities=14% Similarity=0.231 Sum_probs=89.0
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCC-CCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDD-FDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
++++||+.++.+++..|.......+.++|++|+|||++|..+++...+. +... ....+|.- ++..+ +.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l----~a- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL----IA- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH----hh-
Confidence 5689999999999999987777777899999999999999999886411 0000 12233321 11111 10
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc---------cccccccCCCCCCCC-cEEEEEcCChhHH
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV---------DLTQLGVPLPSPTTA-SKVVFTTRFVEVC 298 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTtR~~~v~ 298 (831)
+.. .....+.....+...+. +++.+|++|++.... +...+..+.. ..| -++|-+|...+.-
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 000 01122333333333332 468999999986431 1112222222 223 3455455444331
Q ss_pred h-------hccCCceEEcCCCChHHHHHHHHHHhh
Q 003317 299 G-------AMKAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 299 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
. .......+.+...+.++...++.....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111235688999999999998876543
No 169
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.0026 Score=63.78 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEE
Q 003317 152 IEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIW 211 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w 211 (831)
...+.++......++.++.+ ..+|.+.|++|+|||+||.++..+.- ..+.|+.++-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l--~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEAL--IHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHH--hcCCeeEEEE
Confidence 34567888888888888865 35999999999999999999888642 2344554443
No 170
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=7.4e-06 Score=90.26 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=84.4
Q ss_pred cccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 513 RWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.|.++...+.++|.+..+... .-++.|+.|+|+. +...- .+..|.+|++|||++| .+..+|.-....+. |+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeee
Confidence 367777788888877766555 5678888888887 33332 6778888999999988 67888863233333 88888
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE 651 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 651 (831)
+++|.... +..+.+|++|+.|+++.|-+.....+..+..+ ..|+.|.|.++.
T Consensus 239 lrnN~l~t---------L~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTT---------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHh---------hhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 88886654 55667777777888876665544444333322 246666666653
No 171
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.40 E-value=0.0011 Score=73.83 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=87.0
Q ss_pred CcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccC-CCCCEEEEEEeCCCCC
Q 003317 154 PTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRK-DDFDVVIWVVVSKDLK 219 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~F~~~~wv~~s~~~~ 219 (831)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++....... ..+....++.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 456799988888876531 14567899999999999999999998741110 11223444444332
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc---------cc-----cccccCCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV---------DL-----TQLGVPLPS--P 282 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~-----~~l~~~l~~--~ 282 (831)
+ ++...... ............+... .+++++|+||+++... +. ..+...+.. .
T Consensus 261 --e----Ll~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --E----LLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --h----hcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1 11110000 0001111112222211 3578999999997421 11 112111211 1
Q ss_pred CCCcEEEEEcCChhHHh-hc----cCCceEEcCCCChHHHHHHHHHHhh
Q 003317 283 TTASKVVFTTRFVEVCG-AM----KAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
..+..||.||...+... .+ .-...+.++..+.++..++|..+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 12344555555443211 11 2245689999999999999998864
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0069 Score=67.73 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=65.7
Q ss_pred CCcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
++.+|.++.+++|++++.- -+-++++.+|++|+|||++|+.++.... ..| +.++|+.-.|..++-.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn----RkF---fRfSvGG~tDvAeIkG- 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN----RKF---FRFSVGGMTDVAEIKG- 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC----Cce---EEEeccccccHHhhcc-
Confidence 4568999999999998832 2678999999999999999999999874 333 3456777767666532
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHc---CCcEEEEEcCCCC
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVLS---KKKFVLLLDDMWK 268 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 268 (831)
+. ..-....-.++-+.|+ ...-|+.+|.|+.
T Consensus 483 -------HR----RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 -------HR----RTYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred -------cc----eeeeccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 11 1111111223334443 3566889999864
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.39 E-value=0.0008 Score=79.08 Aligned_cols=157 Identities=19% Similarity=0.281 Sum_probs=90.0
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCC-CCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDD-FDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
++++||+.++.++++.|......-+.++|++|+|||++|+.+++..... +... .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 5679999999999999877656667799999999999999999875310 1111 24455521 11111 10
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCc----------ccccccccCCCCCCCCcEEEEEcCChhHHh
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKR----------VDLTQLGVPLPSPTTASKVVFTTRFVEVCG 299 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 299 (831)
+.. -..+.++....+...+ +.++.+|++|++... .+...+..++... ..-++|-+|...+...
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHH
Confidence 000 0112333333343333 346789999999642 1111122222211 2234554544333211
Q ss_pred -------hccCCceEEcCCCChHHHHHHHHHHh
Q 003317 300 -------AMKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 300 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
.......+.++..+.++..+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123579999999999999998654
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.38 E-value=0.0028 Score=73.13 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=95.0
Q ss_pred CCcccchHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSC---LGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.+++|.++.++++.+. +... ..+-|.++|++|+|||++|+.+++... .+| +.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~----~p~-----i~is~s--- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE----VPF-----FSISGS--- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCe-----eeccHH---
Confidence 4567887766665443 3321 245789999999999999999998753 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc------------c----ccccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV------------D----LTQLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 282 (831)
++. ... ...........+.......+++|++||++... . +..+...+. ..
T Consensus 251 -~f~----~~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 -EFV----EMF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHH----HHh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 111 110 00111222333444456788999999995321 1 111211111 12
Q ss_pred CCCcEEEEEcCChhHHh-hc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC
Q 003317 283 TTASKVVFTTRFVEVCG-AM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL 350 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 350 (831)
..+-.||.||...+... .+ .-...+.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 23555666666543322 11 123578888899999999998887653211 122356778888773
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.38 E-value=0.00058 Score=63.05 Aligned_cols=89 Identities=25% Similarity=0.093 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
...+.|+|++|+||||+++.+++... .....++.+..+........... ...... . ............+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG----PPGGGVIYIDGEDILEEVLDQLL-LIIVGG--K-KASGSGELRLRLALAL 73 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC----CCCCCEEEECCEEccccCHHHHH-hhhhhc--c-CCCCCHHHHHHHHHHH
Confidence 35789999999999999999999875 22234555554443322221111 001110 0 0222333334455555
Q ss_pred HcCCc-EEEEEcCCCCcc
Q 003317 254 LSKKK-FVLLLDDMWKRV 270 (831)
Q Consensus 254 l~~k~-~LlVlDdv~~~~ 270 (831)
.+..+ .++++|++....
T Consensus 74 ~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 74 ARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHhcCCCEEEEECCcccC
Confidence 55444 899999998653
No 176
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00011 Score=70.06 Aligned_cols=35 Identities=37% Similarity=0.610 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccC-CCCCEEEE
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRK-DDFDVVIW 211 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~F~~~~w 211 (831)
+.|.|+|++|+||||||+.+++... .. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN--IPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCceecchhhc
Confidence 4689999999999999999999975 33 56777776
No 177
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0066 Score=64.48 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-------CCCCCCCCHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLC-------DNSWRSKSLED 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~ 245 (831)
-.+.+.++|+.|+||||+|+.+++..-.. .... ......-...+.+... ..+ .+.......++
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~--~~~~-------~~~Cg~C~sC~~~~~g-~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCE--APQG-------GGACGSCKGCQLLRAG-SHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCC--CCCC-------CCCCCCCHHHHHHhcC-CCCCEEEEeccCCCCCCCHHH
Confidence 35678899999999999999999887411 1100 0000001111111100 000 00001122233
Q ss_pred HHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCCh-hHH-hhccCCceEEcCCCChHH
Q 003317 246 KAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFV-EVC-GAMKAHEYFKVECLAHEK 316 (831)
Q Consensus 246 ~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e 316 (831)
..+ +.+.+ .+++=++|+|++... .....+...+-.-..++.+|+||.+. .+. ...+....+.+.+++.++
T Consensus 91 iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~ 169 (328)
T PRK05707 91 VRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEE 169 (328)
T ss_pred HHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHH
Confidence 222 22222 234445677999754 23333333332222356666666654 343 223345679999999999
Q ss_pred HHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 317 AWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 317 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
+.+.+.+.... ...+.+..++..++|.|.....+
T Consensus 170 ~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 170 SLQWLQQALPE-------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHhccc-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 99888765311 11234567789999999765443
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.013 Score=57.74 Aligned_cols=184 Identities=17% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 003317 171 EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVS-KDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVD 249 (831)
Q Consensus 171 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 249 (831)
.++..++.++|.-|+|||++.+....... + +.++=+.+. +..+...+...++..+.......-....++....
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~----~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN----E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC----C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 45678999999999999999995555442 1 112213333 3456778888888888763211111122333344
Q ss_pred HHHHH-cCCc-EEEEEcCCCCc--ccccccccC--C-CCC-CCCcEEEEE---cCC---hhHHhhcc-CCce-EEcCCCC
Q 003317 250 IFRVL-SKKK-FVLLLDDMWKR--VDLTQLGVP--L-PSP-TTASKVVFT---TRF---VEVCGAMK-AHEY-FKVECLA 313 (831)
Q Consensus 250 l~~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~--l-~~~-~~gs~ilvT---tR~---~~v~~~~~-~~~~-~~l~~L~ 313 (831)
+.... +++| ..+++||.... +..+.++.. + .+. +.=+.+++- -+. ..+.+... .... |.+.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 44444 4677 89999998643 222222111 1 111 111222221 111 01111111 1223 8999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHH
Q 003317 314 HEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRA 360 (831)
Q Consensus 314 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 360 (831)
.++...++..+..+.....+--..+....|.....|.|.+|+.++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999888766532222223556788999999999999876543
No 179
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00041 Score=71.57 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
..+.++|..|+|||.||.++++... .....+++++ ..+++..+....... ...+.. .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~----~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI----EKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH----HcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHh
Confidence 4689999999999999999999985 2234456664 455666665554321 111222 233344
Q ss_pred cCCcEEEEEcCCCC--cccccc--cccCCCC-CCCCcEEEEEcCC
Q 003317 255 SKKKFVLLLDDMWK--RVDLTQ--LGVPLPS-PTTASKVVFTTRF 294 (831)
Q Consensus 255 ~~k~~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 294 (831)
.+-. ||||||+.. ..+|.. +...+.. ...|..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4444 899999943 233432 2111111 1345678999874
No 180
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0033 Score=67.59 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
....+.+.|++|+|||+||..++.. ..|..+=-++ ++++ +|.. ...........+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~------S~FPFvKiiS------pe~m-------iG~s----EsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS------SDFPFVKIIS------PEDM-------IGLS----ESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh------cCCCeEEEeC------hHHc-------cCcc----HHHHHHHHHHHHHH
Confidence 4667889999999999999999876 4566443331 1111 1111 11122233334444
Q ss_pred HHcCCcEEEEEcCCCCcccccccccCCCC-------------CCCCcEEE--EEcCChhHHhhccC----CceEEcCCCC
Q 003317 253 VLSKKKFVLLLDDMWKRVDLTQLGVPLPS-------------PTTASKVV--FTTRFVEVCGAMKA----HEYFKVECLA 313 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~il--vTtR~~~v~~~~~~----~~~~~l~~L~ 313 (831)
..+..--.||+||+...-+|-.++..+.. ...|-|.+ -||....|.+.|+- ...|.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 55667789999999887777766554321 12344544 47777788887763 4578899998
Q ss_pred h-HHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 314 H-EKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 314 ~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
. ++..+.+...- .-.+.+...++.+...+| +-..|+-+-.++
T Consensus 674 ~~~~~~~vl~~~n----~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELN----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHcc----CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 66666665432 123445566777777766 333344444443
No 181
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.25 E-value=4.8e-05 Score=77.36 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=93.5
Q ss_pred CCCCCcccccccC-------cCccchhhhcCCcccEEeccCCCCCCCCChhh-------------hcCCccCcEeeeccc
Q 003317 534 PICPDLQTLFLKG-------INELPRELKALVNLKYLNLDHTTFLHPIPSPL-------------ISSFSMLLVLRMFNC 593 (831)
Q Consensus 534 ~~~~~Lr~L~L~~-------~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~ 593 (831)
..+|+|++|+||+ +..+-.-+.++..|++|.|.+| .+....... +++-++|+++...+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4566777777776 3334455667888888888888 555432221 234456777777776
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
+....+.. ..-.-++..+.|+.+.+..+.+..-.. . .-...+..+++|+.|++.
T Consensus 168 rlen~ga~---~~A~~~~~~~~leevr~~qN~I~~eG~----------------------~-al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 168 RLENGGAT---ALAEAFQSHPTLEEVRLSQNGIRPEGV----------------------T-ALAEALEHCPHLEVLDLR 221 (382)
T ss_pred ccccccHH---HHHHHHHhccccceEEEecccccCchh----------------------H-HHHHHHHhCCcceeeecc
Confidence 65542111 112334444555555555443321000 0 000134455666666666
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC------cc-cccCCCceEEEecccCccccccCCccccccCCCC
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT------WL-ALAPNVRNIGVSTCANMEEIISPGKISQVQNLDP 746 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~------~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 746 (831)
.|....-....+....+.+++|+.|+++.|. +++=. .+ ...|+|+.|.+.+|. ++.-..... . .....
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~l--a-~~~~e 296 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALAL--A-ACMAE 296 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHH--H-HHHhc
Confidence 6544321111111123345666666666663 22211 11 235667777766643 221100000 0 02334
Q ss_pred CCccceeccccc
Q 003317 747 FAKLEYLVLENL 758 (831)
Q Consensus 747 ~~~L~~L~L~~~ 758 (831)
.|.|+.|+|++|
T Consensus 297 k~dL~kLnLngN 308 (382)
T KOG1909|consen 297 KPDLEKLNLNGN 308 (382)
T ss_pred chhhHHhcCCcc
Confidence 667777777664
No 182
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=2.4e-05 Score=86.45 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=76.9
Q ss_pred ccccccceeEEEeccccccccCCC-CCCCCcccccccC----------------------------------cCccchhh
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG----------------------------------INELPREL 554 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~----------------------------------~~~lp~~i 554 (831)
++-.++.+|+|-+.++.+....+. .--..|+.|...+ +..+-.++
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 455678999999999987764333 1122334443332 22223344
Q ss_pred hcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhh
Q 003317 555 KALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLS 634 (831)
Q Consensus 555 ~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~ 634 (831)
.-|++|++|||++| ++..... +..|++|++||++.|....+ +. +. .... +|+.|.+..|.+..+..+..
T Consensus 184 qll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L~~v-----p~-l~-~~gc-~L~~L~lrnN~l~tL~gie~ 252 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCLRHV-----PQ-LS-MVGC-KLQLLNLRNNALTTLRGIEN 252 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchhccc-----cc-cc-hhhh-hheeeeecccHHHhhhhHHh
Confidence 45566666666666 4455442 66666666666666655441 11 00 1111 14555555554444443332
Q ss_pred cccccccccceeeccccCCceeeeccccCCCCcceeeecCCC
Q 003317 635 FHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPF 676 (831)
Q Consensus 635 ~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 676 (831)
+ .+|+.|+++++--...-.+..+..+..|+.|.+.||+
T Consensus 253 L----ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 L----KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h----hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2 2455566655432222222233445556666666654
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.013 Score=60.47 Aligned_cols=193 Identities=18% Similarity=0.253 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHH
Q 003317 156 VGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIER 222 (831)
Q Consensus 156 vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (831)
=|-++.+++|.+.+. . +..+-|.+||++|.|||-||++|+++.. ..| +.|... +
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~----AtF-----IrvvgS----E 220 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD----ATF-----IRVVGS----E 220 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC----ceE-----EEeccH----H
Confidence 367888888777652 1 3678899999999999999999999864 444 333322 2
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCc-------------cc---ccccccCCCC--CC
Q 003317 223 IQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKR-------------VD---LTQLGVPLPS--PT 283 (831)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------------~~---~~~l~~~l~~--~~ 283 (831)
+.+..+ | .-..++..+.+.-+ ..+..|.+|.++.. +. ..++..-+.. ..
T Consensus 221 lVqKYi---G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 221 LVQKYI---G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHHh---c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 222222 1 11234444444444 46889999988642 00 1112111211 23
Q ss_pred CCcEEEEEcCChhHH-----hhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc----hHH
Q 003317 284 TASKVVFTTRFVEVC-----GAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP----LAL 354 (831)
Q Consensus 284 ~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----lai 354 (831)
..-|||..|-..++. +.-.-...++++.-+.+--.++|+-++.......+-++ +.+++.|.|.- -||
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 356888877654442 22223567888866666668888888877665555555 44556666654 345
Q ss_pred HHHHHHhcc--CC---ChhHHHHHHHHH
Q 003317 355 ITIGRAMAC--KK---QPEDWKYAIQVL 377 (831)
Q Consensus 355 ~~~~~~l~~--~~---~~~~w~~~l~~l 377 (831)
.+=|++++- .+ +.+++..+.+..
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 555555442 22 344555554443
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0029 Score=66.98 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=65.3
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCE-EEEEEeCCC-CCHHHHHHHHHHHhCCCCCC
Q 003317 161 TLDKVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDV-VIWVVVSKD-LKIERIQDDIWKKIGLCDNS 237 (831)
Q Consensus 161 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~ 237 (831)
...++++.+.. +.-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+.....
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~---~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~- 194 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA---ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF- 194 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC-
Confidence 34557777754 3445679999999999999999999864 223344 467666664 4678888888877665321
Q ss_pred CCCCCHH--H---HHHHHHHHH--cCCcEEEEEcCCC
Q 003317 238 WRSKSLE--D---KAVDIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 238 ~~~~~~~--~---~~~~l~~~l--~~k~~LlVlDdv~ 267 (831)
+..... . ....+.+++ .+++.+||+|++.
T Consensus 195 -de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 195 -DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111111 1 111222222 4899999999984
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.016 Score=60.96 Aligned_cols=179 Identities=11% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEE-----EEEEeCCCCCHHHHHHHHHHHhCC
Q 003317 160 STLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVV-----IWVVVSKDLKIERIQDDIWKKIGL 233 (831)
Q Consensus 160 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~-----~wv~~s~~~~~~~~~~~i~~~l~~ 233 (831)
...+.+...+..+.+ ..+.++|+.|+||+++|..+++..-. .....+- -|+..+..+|+..+. ..
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC--~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA--SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC--CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 446667777766654 46899999999999999999887641 1111100 000000000000000 00
Q ss_pred CCCCC----CCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCC-hhHHh-h
Q 003317 234 CDNSW----RSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRF-VEVCG-A 300 (831)
Q Consensus 234 ~~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~ 300 (831)
+.... .....++ +..+.+.+ .+++=++|+|++.... .-..+...+-.-..++.+|++|.+ ..+.. .
T Consensus 82 p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 00000 0011222 22222322 2455689999987542 222222222222235656555554 44432 2
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
.+....+.+.+++.+++.+.+.+. + . ....+..++..++|.|+.+..+
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~-~-~-------~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQ-G-V-------SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHc-C-C-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 334568899999999998888643 1 1 1233667899999999866443
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.0009 Score=66.69 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV 214 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 214 (831)
-.++|+|..|+||||++..+..... ..|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~----~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR----HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc----ccCCEEEEEec
Confidence 4678999999999999999998764 78888877754
No 187
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0012 Score=63.25 Aligned_cols=66 Identities=23% Similarity=0.429 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS 255 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (831)
.|.|+|++|+||||||+.+..... ...-+.|...|-.. +...+.++....+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHh
Confidence 489999999999999999987753 01123455555211 123345566666677777
Q ss_pred CCcEEEEEcCCC
Q 003317 256 KKKFVLLLDDMW 267 (831)
Q Consensus 256 ~k~~LlVlDdv~ 267 (831)
+.+ .|+|+..
T Consensus 58 ~~~--wIidg~~ 67 (171)
T PRK07261 58 KHD--WIIDGNY 67 (171)
T ss_pred CCC--EEEcCcc
Confidence 666 6778764
No 188
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.00083 Score=68.90 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
....+.++|++|+|||.||..+.+... .....++|+. ..++...+..... .........
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~----~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l~---- 163 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI----ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAIA---- 163 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHH----HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHHH----
Confidence 445699999999999999999998874 2233455653 4555555543321 122222222
Q ss_pred HHcCCcEEEEEcCCCCc--ccc-c-ccccCCCCCCCCcEEEEEcCCh
Q 003317 253 VLSKKKFVLLLDDMWKR--VDL-T-QLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
.+ .+.-||||||+... ..+ . .+...+.....+..+||||...
T Consensus 164 ~l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 164 KL-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HH-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 22 23459999999543 111 1 1222221111123588888743
No 189
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.00099 Score=60.83 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999864
No 190
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.07 E-value=0.00011 Score=72.04 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=103.4
Q ss_pred ccccccceeEEEeccccccc-----cCC-CCCCCCcccccccC------cCccc-------hhhhcCCcccEEeccCCCC
Q 003317 510 GIERWKGVRKISLMQNQIRN-----LPF-TPICPDLQTLFLKG------INELP-------RELKALVNLKYLNLDHTTF 570 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~-----lp~-~~~~~~Lr~L~L~~------~~~lp-------~~i~~L~~Lr~L~L~~~~~ 570 (831)
....+..+..++|++|.|.. +.. ..+-.+|+..++++ ..++| +.+-+|++|+..+||.|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44456788999999998864 211 14567788888876 22333 4556899999999999965
Q ss_pred CCCCCh---hhhcCCccCcEeeeccccCCCccccccc------cchhhhcCCcCCCceeEeecchhHHHH--Hhhccccc
Q 003317 571 LHPIPS---PLISSFSMLLVLRMFNCKSSSMANVVRE------VLIDELVQLDHLNELSMSLHSIRALER--FLSFHKLK 639 (831)
Q Consensus 571 l~~lp~---~~i~~L~~L~~L~l~~~~~~~~~~~~~~------~~~~~L~~L~~L~~L~i~~~~~~~l~~--l~~~~~l~ 639 (831)
-...|+ +.|++-++|.+|.+++|..-.++..... ...+...+-+.|+...+..+...+... .......+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 555554 2467888999999999876553111101 111223334556655554443322111 00111112
Q ss_pred ccccceeeccccCC----ceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcC
Q 003317 640 SCTGSLYLNVWEHS----NWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYC 703 (831)
Q Consensus 640 ~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 703 (831)
.+|+.+.+..+... +.+-...+..+.+|+.|+|..|...-.....+.......+.|+.|.+..|
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 35555555544311 11111123345667777776664332111111111122455666666666
No 191
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.0028 Score=62.04 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSW-RSKSLEDKAVDIF 251 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (831)
.+||.++|+.|+||||.+..++.... .+ -..+..++... .....+-++..++.++.+.... ...+..+......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 47899999999999988888887775 22 44566666533 3355677888899988653211 2233444444333
Q ss_pred HHHcCCc-EEEEEcCC
Q 003317 252 RVLSKKK-FVLLLDDM 266 (831)
Q Consensus 252 ~~l~~k~-~LlVlDdv 266 (831)
+..+.++ =++++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 3344444 37777865
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.014 Score=62.31 Aligned_cols=159 Identities=12% Similarity=0.030 Sum_probs=83.2
Q ss_pred Cccc-chHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 154 PTVG-LESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 154 ~~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
.++| -+..++.+.+.+..+. .+.+.++|+.|+||||+|+.+.+..-. ....... ........+.+...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c--~~~~~~~-------~cg~C~~c~~~~~~- 75 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC--LERNGVE-------PCGTCTNCKRIDSG- 75 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC--CCCCCCC-------CCCcCHHHHHHhcC-
Confidence 3466 6777788888887665 456699999999999999999887531 1101000 00000111111000
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHH
Q 003317 232 GLCD-----NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVC 298 (831)
Q Consensus 232 ~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 298 (831)
..++ ........++..+. .+.+ .+.+=++|+|++.... ....+...+-....++.+|++|.+. .+.
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l-~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYL-KEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHH-HHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 00011122222222 2221 2445578899986532 2333433343333456666666543 333
Q ss_pred h-hccCCceEEcCCCChHHHHHHHHH
Q 003317 299 G-AMKAHEYFKVECLAHEKAWILFQE 323 (831)
Q Consensus 299 ~-~~~~~~~~~l~~L~~~e~~~Lf~~ 323 (831)
. ..+....+++.+++.++..+.+.+
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 2 223456899999999998777754
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.96 E-value=0.11 Score=62.99 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.+..++.+.+.+.. ....++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999998888877742 123578899999999999999999775
No 194
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.012 Score=65.60 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=87.0
Q ss_pred ccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHH
Q 003317 156 VGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIER 222 (831)
Q Consensus 156 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (831)
=|-++-+.++-+.+.- ...+-|..+|++|+|||++|+++++... ..|- .+...
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~----~nFl-----svkgp----- 502 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG----MNFL-----SVKGP----- 502 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc----CCee-----eccCH-----
Confidence 3466666666544421 3678899999999999999999999865 4442 22221
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc-------------ccccccCCCCCCCCcEEE
Q 003317 223 IQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD-------------LTQLGVPLPSPTTASKVV 289 (831)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gs~il 289 (831)
+++... -..++..+.+.++..-+--+.++.||.++.... +..+..-+........|+
T Consensus 503 ---EL~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 ---ELFSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred ---HHHHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111111 112222333333333334668888888754210 111111111112222333
Q ss_pred E---EcCChhHHhh-cc---CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHH
Q 003317 290 F---TTRFVEVCGA-MK---AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELA 340 (831)
Q Consensus 290 v---TtR~~~v~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 340 (831)
| |-|.+.+-.. +. ....+.++.-+.+--.++|+.++........-++.+++
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 3 4554433211 22 34567777777777899999999876544444555544
No 195
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.94 E-value=0.00042 Score=80.57 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCCCcccccccCcCcc----chhhh-cCCcccEEeccCCCCC-CCCChhhhcCCccCcEeeeccccCCCccccccccchh
Q 003317 535 ICPDLQTLFLKGINEL----PRELK-ALVNLKYLNLDHTTFL-HPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLID 608 (831)
Q Consensus 535 ~~~~Lr~L~L~~~~~l----p~~i~-~L~~Lr~L~L~~~~~l-~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 608 (831)
.-.+|+.|+++|.+.+ |..+| .|+.|+.|.+++-... .++-. ...+++||..||++++.+.. +.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~n---------l~ 189 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISN---------LS 189 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccC---------cH
Confidence 4467888888883333 33443 4788888888875211 11222 34578888888888887765 35
Q ss_pred hhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeec-----cccCCCCcceeeecCCCCCc
Q 003317 609 ELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVL-----SLGELKNLHTLHMQFPFLDD 679 (831)
Q Consensus 609 ~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~ 679 (831)
.+.+|++|+.|.+..-.+.....+..+..+ ++|+.|+++........... .-..+|+|+.|+.+++...+
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 566666666665554333333333333332 36777887765432211100 11236777777777665544
No 196
>PRK06526 transposase; Provisional
Probab=96.92 E-value=0.0011 Score=67.63 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
....+.|+|++|+|||+||..+.+... ...+ .+.|+ +..++...+..... ..... ..+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~-~v~f~------t~~~l~~~l~~~~~-------~~~~~---~~l~~ 156 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC---QAGH-RVLFA------TAAQWVARLAAAHH-------AGRLQ---AELVK 156 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH---HCCC-chhhh------hHHHHHHHHHHHHh-------cCcHH---HHHHH
Confidence 456789999999999999999988864 2223 23332 34455555543321 11111 12222
Q ss_pred HHcCCcEEEEEcCCCC
Q 003317 253 VLSKKKFVLLLDDMWK 268 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~ 268 (831)
+ .+.-+||+||+..
T Consensus 157 -l-~~~dlLIIDD~g~ 170 (254)
T PRK06526 157 -L-GRYPLLIVDEVGY 170 (254)
T ss_pred -h-ccCCEEEEccccc
Confidence 2 2345899999964
No 197
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.0057 Score=61.99 Aligned_cols=75 Identities=25% Similarity=0.273 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
....+.++|.+|+|||+||.++++... .....++++++ .+++..+-..... ...... +.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~----~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~~----~l~ 159 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL----AKGRSVIVVTV------PDVMSRLHESYDN------GQSGEK----FLQ 159 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH----HcCCCeEEEEH------HHHHHHHHHHHhc------cchHHH----HHH
Confidence 456899999999999999999999975 23344566643 3455555443321 111112 222
Q ss_pred HHcCCcEEEEEcCCCC
Q 003317 253 VLSKKKFVLLLDDMWK 268 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~ 268 (831)
.+ .+--||||||+..
T Consensus 160 ~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 160 EL-CKVDLLVLDEIGI 174 (248)
T ss_pred Hh-cCCCEEEEcCCCC
Confidence 22 3556999999943
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.87 E-value=0.0097 Score=66.51 Aligned_cols=172 Identities=16% Similarity=0.114 Sum_probs=90.4
Q ss_pred CcccchHHHHHHHHHh---cC-------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 154 PTVGLESTLDKVWSCL---GE-------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
.+.|.+..++.+.... .. ...+-|.++|++|+|||.+|+.+++... ..|- -+..+ .+
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~----~~~~---~l~~~------~l 295 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ----LPLL---RLDVG------KL 295 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEE---EEEhH------Hh
Confidence 4567776666555421 11 2456789999999999999999999864 2331 11111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----c----------cccccCCCCCCCCcEEE
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----L----------TQLGVPLPSPTTASKVV 289 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~il 289 (831)
.... ...+...+...+...-...+++|++|+++.... . ..+...+.....+--||
T Consensus 296 ----~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 296 ----FGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ----cccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 1000 111222222222222235789999999864210 0 00111111122233455
Q ss_pred EEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 290 FTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 290 vTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
.||.+... .+...-...+.++.-+.++-.++|..+.......... ..-...+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 56654432 1211234578888889999999998887653211100 112456667777654
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.86 E-value=0.0086 Score=56.73 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHhhhhccC----------------CCCCEEEEEEeCCC--
Q 003317 157 GLESTLDKVWSCLGEENV-GIIGLYGMGGVGKTTLLTQINNKFLDSRK----------------DDFDVVIWVVVSKD-- 217 (831)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~F~~~~wv~~s~~-- 217 (831)
|-+..++.+.+.+..+.. ..+.++|+.|+||+|+|..+.+..-.... ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777888888877765 46899999999999999999887641111 11222333322221
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCC
Q 003317 218 -LKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRF 294 (831)
Q Consensus 218 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~ 294 (831)
..++++- ++...+.... ..++.=++|+||+... .....+...+-....++.+|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 1222221 3333332211 1235568999999764 3344443333333456888888876
Q ss_pred hh-HH-hhccCCceEEcCCCC
Q 003317 295 VE-VC-GAMKAHEYFKVECLA 313 (831)
Q Consensus 295 ~~-v~-~~~~~~~~~~l~~L~ 313 (831)
.+ +. .-......+.+.++|
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 54 32 223344567776654
No 200
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.024 Score=60.74 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=124.9
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHHhhhhccCCCCCEEEEEEeCCC---CCHHHHHHHHHHHhCC
Q 003317 158 LESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLL-TQINNKFLDSRKDDFDVVIWVVVSKD---LKIERIQDDIWKKIGL 233 (831)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~ 233 (831)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++.++.+ .+..+++.+- .+-..+...++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~--------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK--------NVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC--------CEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999999888899999999999999999 77766543 1556655432 2334555666666553
Q ss_pred C-----------------------CCCCCCCCHHHHHHHHHH---HHc--------------------------CCcEEE
Q 003317 234 C-----------------------DNSWRSKSLEDKAVDIFR---VLS--------------------------KKKFVL 261 (831)
Q Consensus 234 ~-----------------------~~~~~~~~~~~~~~~l~~---~l~--------------------------~k~~Ll 261 (831)
- ..++......++...|.. .|+ .++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1 111122223333322211 111 136799
Q ss_pred EEcCCCCc-----------ccccccccCCCCCCCCcEEEEEcCChhHHh----hcc--CCceEEcCCCChHHHHHHHHHH
Q 003317 262 LLDDMWKR-----------VDLTQLGVPLPSPTTASKVVFTTRFVEVCG----AMK--AHEYFKVECLAHEKAWILFQEH 324 (831)
Q Consensus 262 VlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~ 324 (831)
|+|+.-.. .+|... +.. .+-..||++|-+..... .+. ..+.+.+...+.+.|..+...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~---Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAAS---LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHH---HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99998532 234432 222 33467888887655433 332 2457889999999999999998
Q ss_pred hhhcccC------------CC-----CChHHHHHHHHHHhCCCchHHHHHHHHhccCCChh
Q 003317 325 VERQTLE------------SH-----PDIPELAETVTKECGGLPLALITIGRAMACKKQPE 368 (831)
Q Consensus 325 ~~~~~~~------------~~-----~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~ 368 (831)
....... .. .....-....++..||=-.=+..+++.++...+++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8653100 00 12334456677889999999999999998765544
No 201
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=0.026 Score=56.10 Aligned_cols=210 Identities=12% Similarity=0.173 Sum_probs=118.6
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-c-CCCCCEEEEEEeCCC----------C--
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-R-KDDFDVVIWVVVSKD----------L-- 218 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-~~~F~~~~wv~~s~~----------~-- 218 (831)
..+.++++...++.+....+..+-+-++|++|.||-|.+..+.+..-.. + +-.-+..-|.+-|.. +
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 3467778888888777776788999999999999999888887775310 1 112234445443332 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCCc--ccccccccCCCCCCCCc
Q 003317 219 ---------KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKF-VLLLDDMWKR--VDLTQLGVPLPSPTTAS 286 (831)
Q Consensus 219 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs 286 (831)
.-+.+.++++++.+-... . +.-.++.| ++|+-.+++. +....++...-.-...+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 112344444444331110 0 00113455 5556555432 22222322222234457
Q ss_pred EEEEEcCCh--hHHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccC
Q 003317 287 KVVFTTRFV--EVCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACK 364 (831)
Q Consensus 287 ~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~ 364 (831)
|+|+..-+. -+...-...-.+++...+++|-...+.+.+..+....+ .+++.+|+++++|.-.-.-.+...++.+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 777633221 11111122346899999999999999998877653332 7889999999999654333333333221
Q ss_pred ----------CChhHHHHHHHHHhc
Q 003317 365 ----------KQPEDWKYAIQVLRR 379 (831)
Q Consensus 365 ----------~~~~~w~~~l~~l~~ 379 (831)
-...+|+-++..+..
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHH
Confidence 134579987765543
No 202
>PLN03150 hypothetical protein; Provisional
Probab=96.82 E-value=0.0016 Score=76.14 Aligned_cols=109 Identities=11% Similarity=0.002 Sum_probs=51.8
Q ss_pred cceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCCC
Q 003317 667 LHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLD 745 (831)
Q Consensus 667 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~ 745 (831)
++.|+|++|......+..+. .+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|. .++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~----~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--------~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--------SLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHHh----CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--------HHh
Confidence 45555555544332222222 25566666666553333444 355566666666665443334433 455
Q ss_pred CCCccceecccccccccccCCCCCC-CCCccEEeecCCCCCCC
Q 003317 746 PFAKLEYLVLENLMNLKSIYWSPLP-FPQLMEIRVNGCPILQK 787 (831)
Q Consensus 746 ~~~~L~~L~L~~~~~l~~i~~~~~~-~p~L~~L~l~~C~~L~~ 787 (831)
.+++|+.|+|+++.-...+|..... +.++..+++.+++.+-.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 5666666666654333334433222 23444555555444433
No 203
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00068 Score=66.79 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=56.1
Q ss_pred ccceeEEEeccccccccCCCCCCCCcccccccC-----cCccchhhhcCCcccEEeccCCCCCC---CCChhhhcCCccC
Q 003317 514 WKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG-----INELPRELKALVNLKYLNLDHTTFLH---PIPSPLISSFSML 585 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~-----~~~lp~~i~~L~~Lr~L~L~~~~~l~---~lp~~~i~~L~~L 585 (831)
+..+.++++.+..+.++...+.+++|+.|.++. ...++..+.++++|++|++++| .++ .+++ ...+.||
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcch
Confidence 456777777777777777777888888888876 3445555566688888888888 344 3443 5567777
Q ss_pred cEeeeccccCCC
Q 003317 586 LVLRMFNCKSSS 597 (831)
Q Consensus 586 ~~L~l~~~~~~~ 597 (831)
..|++.+|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 777777776554
No 204
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.80 E-value=0.013 Score=59.93 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH-HHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI-ERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i 227 (831)
..++|-.++-.++-.++.. ++..-|.|+|+.|.|||+|.-.+..+.+ ....+| +-|........ .-.++.|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q-~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ-ENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH-hcCCeE---EEEEECccchhhHHHHHHH
Confidence 4578988888888887754 5677788999999999999988877732 233444 44444444332 3345556
Q ss_pred HHHhCCCCC--CCCCCCHHHHHHHHHHHHcC------CcEEEEEcCCCCccc-------ccccccCCCCCCCCcEEEEEc
Q 003317 228 WKKIGLCDN--SWRSKSLEDKAVDIFRVLSK------KKFVLLLDDMWKRVD-------LTQLGVPLPSPTTASKVVFTT 292 (831)
Q Consensus 228 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~ilvTt 292 (831)
.+++...-. .....+..+...++-..|+. -++++|+|.++--.. ..-+-..-....+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 555532111 11223334444555555542 357888887753211 000111111234567788999
Q ss_pred CChhH-------HhhccCCceEEcCCCChHHHHHHHHHHhh
Q 003317 293 RFVEV-------CGAMKAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 293 R~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
|-... -.++.-..++-++.++-++...++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 95432 22333334667788888888888887764
No 205
>PRK09183 transposase/IS protein; Provisional
Probab=96.78 E-value=0.0027 Score=65.22 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+.|+|++|+|||+||..+.+...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999988754
No 206
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.74 E-value=0.0055 Score=64.40 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=66.2
Q ss_pred cchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003317 157 GLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG 232 (831)
Q Consensus 157 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (831)
++........+++.. ...+-+.++|..|+|||.||.++++... ...+. +.++++ .+++.++....+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~-v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVS-STLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCC-EEEEEH------HHHHHHHHHHHh
Confidence 454445555555542 2456899999999999999999999985 23333 455543 455556655542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccc--cccCC-CCC-CCCcEEEEEcC
Q 003317 233 LCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQ--LGVPL-PSP-TTASKVVFTTR 293 (831)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~ilvTtR 293 (831)
. .+..+.. +.+ .+-=||||||+... ..|.. +...+ ... ..+..+|+||-
T Consensus 205 ~-------~~~~~~l----~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 D-------GSVKEKI----DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c-------CcHHHHH----HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 1222222 222 24558999999643 34542 32222 111 23456788876
No 207
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.74 E-value=0.0013 Score=59.10 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999885
No 208
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.73 E-value=0.035 Score=59.61 Aligned_cols=73 Identities=16% Similarity=0.384 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC---CEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 159 ESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF---DVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 159 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+...+.....+ ...+|-..+...-...++.+|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4455667777765 46889999999999999999999998862101112 2334444433333445555555544
No 209
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.72 E-value=0.006 Score=58.74 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++..-
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45799999999988888888999999999999999999999988864
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.049 Score=63.23 Aligned_cols=104 Identities=21% Similarity=0.371 Sum_probs=65.1
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
..++|-+..++.+.+.+.. .+..+...+|+.|||||-||+.++...- +.=+..+-++.|....-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf----g~e~aliR~DMSEy~EkH-- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF----GDEQALIRIDMSEYMEKH-- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc----CCCccceeechHHHHHHH--
Confidence 4578999999999888742 2466788899999999999999988753 111344444444332211
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCC
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKF-VLLLDDMWK 268 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 268 (831)
.+-+-+|.+.+ -...++ ...|-+.+++++| +|.||+|..
T Consensus 565 --sVSrLIGaPPG---YVGyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 --SVSRLIGAPPG---YVGYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred --HHHHHhCCCCC---Cceecc-ccchhHhhhcCCCeEEEechhhh
Confidence 22233343321 011111 3456677788888 888999975
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.041 Score=58.34 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV 214 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 214 (831)
...+.++|..|+|||+||..+++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCC-CeEEEEEH
Confidence 47899999999999999999999875 222 35666643
No 212
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.69 E-value=0.0086 Score=60.47 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCCHH---H
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK----IGLCDNSWRSKSLE---D 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~---~ 245 (831)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. +.....-....+.. +
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~----~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA----KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 467999999999999999999988764 234678899887 55554433 23322 00000000112222 2
Q ss_pred HHHHHHHHHcCCcEEEEEcCCC
Q 003317 246 KAVDIFRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~ 267 (831)
....+...++.+.-++|+|.+.
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCcH
Confidence 3334444444566688899873
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.079 Score=55.96 Aligned_cols=176 Identities=9% Similarity=0.042 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC---
Q 003317 160 STLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD--- 235 (831)
Q Consensus 160 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--- 235 (831)
...+.+.+.+..+. ...+.+.|+.|+||+++|+.++...-.. .... ...+..-...+.+... ..++
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~--~~~~-------~~~Cg~C~sC~~~~~g-~HPD~~~ 78 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ--TPQG-------DQPCGQCHSCHLFQAG-NHPDFHI 78 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC--CCCC-------CCCCCCCHHHHHHhcC-CCCCEEE
Confidence 34566777776654 4678899999999999999999886411 1110 0001111111111110 0000
Q ss_pred --C-CCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCCh-hHHhh-ccC
Q 003317 236 --N-SWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFV-EVCGA-MKA 303 (831)
Q Consensus 236 --~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~ 303 (831)
+ .......++.. .+.+.+ .+++=++|+|+++... ....+...+-.-..++.+|++|.+. .+... .+.
T Consensus 79 i~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 79 LEPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0 00112233322 233333 2455588899987542 2333333332223345566555543 44422 334
Q ss_pred CceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 304 HEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 304 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
...+.+.+++.++..+.+.+..... ...+...+..++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 5789999999999988887653211 123556788899999643
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.68 E-value=0.0075 Score=71.91 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCcccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-------E--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||++|+.++.... ...+.++.+...+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-------~~~~~~d~se~~~~~-- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-------VHLERFDMSEYMEKH-- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-------CCeEEEeCchhhhcc--
Confidence 3458888888888877642 1 245788999999999999999988753 223455544422211
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCc-EEEEEcCCCCc
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKK-FVLLLDDMWKR 269 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~ 269 (831)
.+...++.+.+- ...+. ...+.+.++.++ -+++||+++..
T Consensus 525 --~~~~lig~~~gy-vg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 --TVSRLIGAPPGY-VGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --cHHHHhcCCCCC-cccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 112222222110 11111 123344444444 49999999753
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.01 Score=71.02 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=92.4
Q ss_pred CcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 154 PTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.+.|.+..++++.+.+.- ...+.|.++|++|+|||++|+.+++... ..| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~----~~~---i~i~~~----- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG----AYF---ISINGP----- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC----CeE---EEEecH-----
Confidence 467999998888776521 2346788999999999999999998763 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc-------------ccccccCCCC-CCCCc
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD-------------LTQLGVPLPS-PTTAS 286 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~gs 286 (831)
++ .... ...........+.......+.+|++||+..... ...+...+.. ...+.
T Consensus 247 -~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 1000 111122233333334456778999999854210 1112111111 12233
Q ss_pred EEEE-EcCChh-HHhhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 287 KVVF-TTRFVE-VCGAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 287 ~ilv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
.++| ||.... +...+ .-...+.+...+.++-.+++...........+ .....+++.+.|..-+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCHH
Confidence 4444 444332 21111 12346778888888888888865533221111 1256777888886543
No 216
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=0.00046 Score=60.80 Aligned_cols=81 Identities=30% Similarity=0.373 Sum_probs=69.7
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
.++..++|++|.+..+|+. .+++.+.+|++++ +..+|.++..++.||.|+++.| .+...|. +|..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~-vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPR-VIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchH-HHHHHHhHHHhcC
Confidence 5677889999999999886 7788999999987 8889999999999999999999 5778887 5888999999988
Q ss_pred ccccCCC
Q 003317 591 FNCKSSS 597 (831)
Q Consensus 591 ~~~~~~~ 597 (831)
.++....
T Consensus 131 ~~na~~e 137 (177)
T KOG4579|consen 131 PENARAE 137 (177)
T ss_pred CCCcccc
Confidence 8776655
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.071 Score=59.25 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
...+|+|+|++|+||||++..++.... .+.....+..++... .....+.++.....++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la--~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA--AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH
Confidence 457999999999999999999888764 222233455554322 11222333333344443221 1223333443333
Q ss_pred HHHcCCcEEEEEcCCC
Q 003317 252 RVLSKKKFVLLLDDMW 267 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (831)
. +.+ .=+||+|...
T Consensus 425 ~-l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 R-LRD-YKLVLIDTAG 438 (559)
T ss_pred H-hcc-CCEEEecCCC
Confidence 3 333 4478888864
No 218
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.011 Score=60.05 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDD----FDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 241 (831)
.-.++.|+|.+|+|||++|.+++.... .... ...++|++....++...+ .++++..+..... ....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~--~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQ--LPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHee--CccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecC
Confidence 568999999999999999999976542 1121 368999998887765444 3444444321110 0111
Q ss_pred CHH---HHHHHHHHHHcC--CcEEEEEcCCC
Q 003317 242 SLE---DKAVDIFRVLSK--KKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 267 (831)
+.+ .....+.+.+.. +.-+||+|.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 222 333444455533 55689999874
No 219
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.03 Score=64.41 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=103.3
Q ss_pred CCcccchHHHHH---HHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDK---VWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.++.|.++.+++ ++++|.+. -++-+-++|++|+|||-||++++.... +-|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg---------VPF~svSGS--- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSVSGS--- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC---------CceeeechH---
Confidence 345787766655 55566542 367889999999999999999999875 334555543
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCccc-----------------ccccccCCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRVD-----------------LTQLGVPLPSP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~l~~~l~~~ 282 (831)
++++.+...+ ..++..|...- ...+..+.+|+++...- +.++..-+...
T Consensus 379 -----EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 -----EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -----HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 2333332211 22333333333 35788999998864211 12222122112
Q ss_pred CCCc--EEEEEcCChhHHhh-----ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 283 TTAS--KVVFTTRFVEVCGA-----MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 283 ~~gs--~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
..+. -++-+|...++... -.-...+.++.-+.....++|+-++..... ..+..++.+ |+...-|.+=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 2222 23335555554321 122456788888888889999998876542 245566777 888888888664
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.63 E-value=0.13 Score=56.84 Aligned_cols=90 Identities=22% Similarity=0.177 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSW-RSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 250 (831)
...+|.++|..|+||||+|..++.... +..+ .++-|+... .....+.++.++.+++.+.... ...+........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~---~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK---KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 467999999999999999999998875 2223 344444322 1223555667777776543211 122333333333
Q ss_pred HHHHcCCcEEEEEcCCC
Q 003317 251 FRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (831)
.+...+. =+||+|..-
T Consensus 170 l~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 170 LEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHhhcC-CEEEEECCC
Confidence 3333444 467888763
No 221
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.62 E-value=0.003 Score=66.67 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=46.7
Q ss_pred CcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhhhc---cCCCCCEEEE
Q 003317 154 PTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFLDS---RKDDFDVVIW 211 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~~F~~~~w 211 (831)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+....- -.+.|...-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 689999999999998854 246899999999999999999999987510 1346666677
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.62 E-value=0.0022 Score=61.80 Aligned_cols=75 Identities=27% Similarity=0.421 Sum_probs=44.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
...-+.++|..|+|||.||..+.+... ...+ .+.|+. ..+++..+-..- ........ .+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~~----~~ 104 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI---RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEEL----LK 104 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH---HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHH----HH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCc-ceeEee------cCceeccccccc-------cccchhhh----cC
Confidence 456799999999999999999999875 2333 456663 455555543221 11222222 23
Q ss_pred HHcCCcEEEEEcCCCCc
Q 003317 253 VLSKKKFVLLLDDMWKR 269 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~ 269 (831)
.+. +-=||||||+...
T Consensus 105 ~l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 105 RLK-RVDLLILDDLGYE 120 (178)
T ss_dssp HHH-TSSCEEEETCTSS
T ss_pred ccc-cccEeccccccee
Confidence 333 3457889999643
No 223
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.61 E-value=0.073 Score=59.91 Aligned_cols=202 Identities=16% Similarity=0.130 Sum_probs=119.2
Q ss_pred CCcccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhc----cCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDS----RKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
..+-+|+.+..+|.+++.. +..+.+-|.|-+|+|||..+..|.+..... .-..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999999888743 345699999999999999999999966411 122343 344555555678999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-----CCcEEEEEcCCCCccc--ccccccCCC-CCCCCcEEEEEcC-C
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS-----KKKFVLLLDDMWKRVD--LTQLGVPLP-SPTTASKVVFTTR-F 294 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~ilvTtR-~ 294 (831)
+..|..++.... .........|..++. .+..+|++|+++.... .+-+-..|. ...++||++|.+= +
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999997643 334444455555543 4678999998753211 001111111 1345677665332 1
Q ss_pred -hhHH-hhcc-------CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHH
Q 003317 295 -VEVC-GAMK-------AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRA 360 (831)
Q Consensus 295 -~~v~-~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 360 (831)
.+.. +.+. ....+.+.+.++++-.++...+..+...-.....+=++++|+.-.|-.-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111 1111 1235777888888888887777655432222223334555655555555555554443
No 224
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.60 E-value=0.037 Score=57.16 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHH
Q 003317 161 TLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 161 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (831)
-++++..++.. -.-|.+.|++|+|||++|+.+.+... . ..+.+++....+..+++
T Consensus 10 l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg----~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD----R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC----C---CEEEEeCCccCCHHHHh
Confidence 34455555543 23566899999999999999987532 2 23455666655555554
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.094 Score=55.25 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC----
Q 003317 160 STLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLC---- 234 (831)
Q Consensus 160 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~---- 234 (831)
...+++.+.+..+. ...+-++|+.|+||+++|+.+.+..-.. ..-+ .....-...+.+... ..+
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~--~~~~--------~~Cg~C~sC~~~~~g-~HPD~~~ 78 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ--NYQS--------EACGFCHSCELMQSG-NHPDLHV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC--CCCC--------CCCCCCHHHHHHHcC-CCCCEEE
Confidence 34566666665554 5688999999999999999998876311 1000 000000111111100 000
Q ss_pred ---CCCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcC-ChhHH-hhcc
Q 003317 235 ---DNSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTR-FVEVC-GAMK 302 (831)
Q Consensus 235 ---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~-~~~~ 302 (831)
.........++.. .+.+.+ .+++=++|+|++... .....+...+-.-..++.+|++|. ...+. +..+
T Consensus 79 i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 79 IKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred EecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000112233332 233333 234458888998754 233333333322233455555544 44443 3334
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
....+.+.+++.+++.+.+.... . + .+..+++.++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~---~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG---I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC---C----c----hHHHHHHHcCCCHHHHHHH
Confidence 45789999999999988876431 0 1 1456789999999876543
No 226
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.57 E-value=0.0064 Score=63.76 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~----~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ----KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 467999999999999999999887764 334567899877766642 44555442211 123345666666
Q ss_pred HHHHHcC-CcEEEEEcCCC
Q 003317 250 IFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~~-k~~LlVlDdv~ 267 (831)
+...++. ..-+||+|.|-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 6665544 55699999974
No 227
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.56 E-value=0.0066 Score=63.61 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. .+..+.++....
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~----~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ----KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 567999999999999999999887764 234567888776665542 45555543211 123345666666
Q ss_pred HHHHHc-CCcEEEEEcCCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~~ 268 (831)
+...++ +..-+||+|.|-.
T Consensus 125 ~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHhhccCCcEEEEcchhh
Confidence 666554 4566999999853
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.54 E-value=0.038 Score=54.38 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=98.2
Q ss_pred CCcccchHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDK---VWSCLGEE------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
+++||.+..+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++... -.| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k----vp~-----l~vka----t~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK----VPL-----LLVKA----TEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC----Cce-----EEech----HHH
Confidence 456898887765 66777652 578999999999999999999999865 333 11111 111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCc----------ccc----cccccCCC--CCCCCc
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKR----------VDL----TQLGVPLP--SPTTAS 286 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~----~~l~~~l~--~~~~gs 286 (831)
|-+.. .+....++.+.+.- +--++.+.+|.++.. .+. ..+..-+. ..+.|-
T Consensus 188 ---iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 188 ---IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ---HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11111 12233344444443 347899999987542 011 11111111 133465
Q ss_pred EEEEEcCChhHHhhc---cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 287 KVVFTTRFVEVCGAM---KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 287 ~ilvTtR~~~v~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
..|-.|.+.+..... .-..-++..--+++|-.+++...+..-....... .+.++++.+|+.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 566666655553321 1234577777788888888888876543222222 456667777653
No 229
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.54 E-value=0.025 Score=64.49 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+.++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999998887766655677899999999999999998754
No 230
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.42 Score=51.49 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
-|-..++|++|.|||+++.+++|... |+..- +..+...+-.+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~------ydIyd-LeLt~v~~n~d-Lr~LL~~----------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN------YDIYD-LELTEVKLDSD-LRHLLLA----------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC------CceEE-eeeccccCcHH-HHHHHHh-----------------------
Confidence 36678999999999999999999864 44221 12222111111 2222221
Q ss_pred HcCCcEEEEEcCCCCccc-----------cc---------ccccCC---CCCCCCcEEEE-EcCChhHH-----hhccCC
Q 003317 254 LSKKKFVLLLDDMWKRVD-----------LT---------QLGVPL---PSPTTASKVVF-TTRFVEVC-----GAMKAH 304 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~-----------~~---------~l~~~l---~~~~~gs~ilv-TtR~~~v~-----~~~~~~ 304 (831)
...+-+||+.|++...+ .. .+...+ -..+.+-|||| ||-..+-. +.-.-.
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 13456777777753211 11 011111 11122346655 66644432 211223
Q ss_pred ceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhc
Q 003317 305 EYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMA 362 (831)
Q Consensus 305 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 362 (831)
..+.+..-+.+.-..||.+..+.+. + ..++.+|.+.-.|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 4578888999999999998876543 1 23466666666665555455555443
No 231
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.014 Score=64.87 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=107.1
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+++||-+..+..|.+.+..+. .......|+-|+||||+|+.++...... .. .....+......++|...-
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~--~~-------~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE--NG-------PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC--CC-------CCCCcchhhhhhHhhhcCC
Confidence 467999999999999887664 4677789999999999999998876411 10 1111222222333333220
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcE-EEEEcCChhHH-h
Q 003317 232 GLCD---NSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASK-VVFTTRFVEVC-G 299 (831)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTtR~~~v~-~ 299 (831)
.... +.......++. +.|.+.. +++-=+.|+|+|... ..|..+...+-.--..-+ |+.||-...+. .
T Consensus 87 ~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 87 LIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000 00011122222 1222222 234448999999753 445555443322122334 44455544442 3
Q ss_pred hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch
Q 003317 300 AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL 352 (831)
Q Consensus 300 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 352 (831)
..+..+.|.++.++.++-...+...+..+.... ..+....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 344567899999999999998888887655322 24556777777777553
No 232
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.024 Score=67.90 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=93.7
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
..+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++... ..| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~----~~f-----i~v~~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG----ANF-----IAVRG--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----CCE-----EEEeh---
Confidence 3456888777777665421 2345688999999999999999999864 333 22221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---------c-----ccccccCCCC--CC
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---------D-----LTQLGVPLPS--PT 283 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~-----~~~l~~~l~~--~~ 283 (831)
.+ ++... ...+...+...+...-...+.+|++|+++... . ...+...+.. ..
T Consensus 521 -~~----l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 -PE----ILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -HH----Hhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 11 11111 11122222222333334678999999985321 0 0111111111 12
Q ss_pred CCcEEEEEcCChhHHh-hc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 284 TASKVVFTTRFVEVCG-AM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 284 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
.+-.||.||...+... .+ .-...+.++..+.++-.++|+............+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2344555665443321 11 2345788899999999999987655433222223 355667787754
No 233
>PRK06921 hypothetical protein; Provisional
Probab=96.51 E-value=0.007 Score=62.36 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV 214 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~ 214 (831)
....+.++|..|+|||+||.++++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~---~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM---RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh---hhcCceEEEEEH
Confidence 467899999999999999999999874 221345566653
No 234
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.50 E-value=0.024 Score=57.29 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC------CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF------DVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WR 239 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~ 239 (831)
.-.++.|+|.+|+|||++|.+++.... ..- ..++|++....++...+. ++....+..... ..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~----~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ----LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh----cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEe
Confidence 567999999999999999999887653 222 567899987777765443 333332211000 01
Q ss_pred CCCHHHHHHHHHHHHc---C-CcEEEEEcCCC
Q 003317 240 SKSLEDKAVDIFRVLS---K-KKFVLLLDDMW 267 (831)
Q Consensus 240 ~~~~~~~~~~l~~~l~---~-k~~LlVlDdv~ 267 (831)
..+.++....+..... . +.-++|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 2345555555555443 3 44589999974
No 235
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.50 E-value=0.013 Score=60.04 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRK----DDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 241 (831)
...+.=|+|.+|+|||.|+.+++-... +. +.=..++|++-...|+...+. +|+++.+..... ....
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~--l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQ--LPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT--SGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCcEEEEEEecccccchHHHHHHHHhh--cccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecC
Confidence 467999999999999999998876543 21 122479999999999887765 567665432110 0122
Q ss_pred CHHHHH---HHHHHHHcC-CcEEEEEcCCC
Q 003317 242 SLEDKA---VDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~~~~---~~l~~~l~~-k~~LlVlDdv~ 267 (831)
+.+++. ..+...+.+ +--|||+|.+-
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 333333 333334433 44489999873
No 236
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00066 Score=77.49 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=22.2
Q ss_pred CccceecccccccccccCCCCC--CCCCccEEeecCCCCCCCC
Q 003317 748 AKLEYLVLENLMNLKSIYWSPL--PFPQLMEIRVNGCPILQKL 788 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~~i~~~~~--~~p~L~~L~l~~C~~L~~l 788 (831)
+.|+.|.+..|...+.-..... .+.++..+.+.+|+.+..-
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3367777777655443222111 1556666777776666543
No 237
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.48 E-value=0.016 Score=54.53 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE---------------------eCCCC-------------
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV---------------------VSKDL------------- 218 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~---------------------~s~~~------------- 218 (831)
.-..+.++|++|.||||+.+.+|...++. ...+|+. |-+++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt-----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT-----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC-----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 56789999999999999999999987522 1222221 11111
Q ss_pred -----------CHHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHHHHHHcCCcEEEEEcCC----CCcccccccccCC
Q 003317 219 -----------KIERIQDDIWKKIGLCDNS----WRSKSLEDKAVDIFRVLSKKKFVLLLDDM----WKRVDLTQLGVPL 279 (831)
Q Consensus 219 -----------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~l~~~l 279 (831)
.+.+-..+.++..++.... .+-..-++..-.+.+.+-+++-+|+-|.- +-...|+-+...-
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 1122223333333432211 12223334444566667778888998964 2223344332211
Q ss_pred CCCCCCcEEEEEcCChhHHhhc
Q 003317 280 PSPTTASKVVFTTRFVEVCGAM 301 (831)
Q Consensus 280 ~~~~~gs~ilvTtR~~~v~~~~ 301 (831)
.-+..|..||++|-+.++...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 2245689999999999876655
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.48 E-value=0.01 Score=59.18 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh-CCCCCC---CCCCC---HHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI-GLCDNS---WRSKS---LED 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~---~~~~~---~~~ 245 (831)
.-+++.|+|++|+|||+++.+++.... .....++|++... ++...+.+ ++... ...... ....+ ..+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~----~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA----RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHH
Confidence 468999999999999999999888764 3357889999876 66555443 33321 000000 01112 223
Q ss_pred HHHHHHHHHcC-CcEEEEEcCCC
Q 003317 246 KAVDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 246 ~~~~l~~~l~~-k~~LlVlDdv~ 267 (831)
....+...+.. +.-+||+|.+.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcH
Confidence 34555555544 45588889874
No 239
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.46 E-value=0.0055 Score=59.72 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 160 STLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 160 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
.+-...++.|. ...++.+.|++|.|||.||.+..-+.- ..+.|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v--~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELV--KEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHH--HTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCcEEEEEe
Confidence 33445556665 567999999999999999999887764 458888888774
No 240
>PRK04296 thymidine kinase; Provisional
Probab=96.46 E-value=0.0033 Score=61.42 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
.++.|+|+.|.||||+|..+..+.. .+...++.+. ..++.......++++++............+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~----~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE----ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH----HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 5788999999999999999988875 2333344342 1112222233455666543221112334455555555 3
Q ss_pred cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh
Q 003317 255 SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE 296 (831)
Q Consensus 255 ~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~ 296 (831)
.++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 334459999998532 1122221111 235788999998743
No 241
>PRK09354 recA recombinase A; Provisional
Probab=96.45 E-value=0.0089 Score=63.21 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++-|+|++|+||||||.+++.... ..-..++|++.-..++. ..+++++...+. ....+.++....
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~----~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ----KAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 467999999999999999999887764 33467889988877765 345555543211 123345666666
Q ss_pred HHHHHcC-CcEEEEEcCCC
Q 003317 250 IFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~~-k~~LlVlDdv~ 267 (831)
+...++. ..-+||+|.|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 6666543 55699999985
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.13 Score=54.76 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEE-EEcCChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccC
Q 003317 256 KKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVV-FTTRFVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLE 331 (831)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 331 (831)
+++=++|+|+++.. .....+...+-.-..++.+| +|++...+... .+....+.+.+++.++..+.+... + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~-~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G-V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C-C---
Confidence 34458889998754 33444433333223455444 55554555432 334578999999999999888664 1 1
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 332 SHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 332 ~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
++ ...++..++|.|..+..+
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999755433
No 243
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.41 E-value=0.0086 Score=72.02 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=38.2
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.+....-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999888732 1345789999999999999999988763
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.40 E-value=0.026 Score=56.70 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~----~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA----GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----hcCCeEEEEECCCCCH
Confidence 568999999999999999999988764 2334677887655543
No 245
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.032 Score=60.46 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=36.4
Q ss_pred CcccchH---HHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLES---TLDKVWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++-|.|+ ++++|+++|.+. =.+-|.++|++|.|||-||++|+....
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 3457655 567788888763 257889999999999999999998865
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0076 Score=58.22 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEE
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWV 212 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv 212 (831)
...+|.+.|+.|+||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~----~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK----LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH----HcCCcEEEE
Confidence 456999999999999999999999875 455555555
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.025 Score=57.20 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 003317 161 TLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW 238 (831)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 238 (831)
.+..+.++..+ .....+.++|.+|+|||+||.++++... ..-..++++ +..++...+-.....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~----~~g~~v~~i------t~~~l~~~l~~~~~~----- 148 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL----LRGKSVLII------TVADIMSAMKDTFSN----- 148 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH----hcCCeEEEE------EHHHHHHHHHHHHhh-----
Confidence 34444444432 2345789999999999999999999875 223455666 345555554443321
Q ss_pred CCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc
Q 003317 239 RSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR 269 (831)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 269 (831)
...+.+. +.+.+. +.=+||+||+...
T Consensus 149 ~~~~~~~----~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 149 SETSEEQ----LLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred ccccHHH----HHHHhc-cCCEEEEeCCCCC
Confidence 1112222 333344 3448888999643
No 248
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.0083 Score=67.31 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..+++-++|++|+||||||..++++.. ..++=|+.|+..+...+-..|...+..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-------YsVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-------YSVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-------ceEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 468999999999999999999988753 34677888888777777777766654322
Q ss_pred HH--cCCcEEEEEcCCCCc
Q 003317 253 VL--SKKKFVLLLDDMWKR 269 (831)
Q Consensus 253 ~l--~~k~~LlVlDdv~~~ 269 (831)
.+ .+++..||+|.++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 22 268889999998753
No 249
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.32 E-value=0.015 Score=70.55 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=43.8
Q ss_pred CCcccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 153 EPTVGLESTLDKVWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+..... ..-...+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~----~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF----DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc----CCCCcEEEEechh
Confidence 45789999999998887531 245788999999999999999998753 2223344455544
No 250
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.30 E-value=0.024 Score=59.76 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRK----DDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW-------RSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~ 241 (831)
.-+++-|+|++|+|||+++.+++-... .. ..=..++|++....|+.+.+. +++++++...... ...
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~--~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQ--LPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHh--cchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCC
Confidence 567999999999999999998765432 11 112478999999888888765 4567766432110 112
Q ss_pred CHHHHH---HHHHHHHc-CCcEEEEEcCCC
Q 003317 242 SLEDKA---VDIFRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~~~~---~~l~~~l~-~k~~LlVlDdv~ 267 (831)
+.++.. ..+...+. ++--|||+|.+-
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 333333 33333443 344588999874
No 251
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.26 E-value=0.024 Score=60.23 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh-hc-cCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL-DS-RKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSKSL 243 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (831)
..+++-|+|.+|+|||+|+.+++-... +. ..+.-..++|++....|+...+.+ ++++++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 567888999999999999998864432 00 011224789999999999887654 66666654211 012333
Q ss_pred HHHH---HHHHHHHcC-CcEEEEEcCCC
Q 003317 244 EDKA---VDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 244 ~~~~---~~l~~~l~~-k~~LlVlDdv~ 267 (831)
++.. ..+...+.. +--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 4333 333333433 34488999874
No 252
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.25 E-value=0.016 Score=59.02 Aligned_cols=91 Identities=18% Similarity=0.322 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDL-KIERIQDDIWKKIGLCD-----NSWRSKSLED 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 245 (831)
.-.-++|+|.+|+|||||++.+++... .+| +.++++-+++.. .+.++.+++...-.... ...+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~----~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA----KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH----hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 456789999999999999999999875 344 456667777664 34556565554321110 0111112211
Q ss_pred -----HHHHHHHHH---cCCcEEEEEcCCC
Q 003317 246 -----KAVDIFRVL---SKKKFVLLLDDMW 267 (831)
Q Consensus 246 -----~~~~l~~~l---~~k~~LlVlDdv~ 267 (831)
.+-.+.+++ +++.+|+++||+-
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 122334455 3899999999984
No 253
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.29 Score=55.80 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=61.8
Q ss_pred CCcccchHHHHHHHHHhcC---------C---CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGE---------E---NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+++=|.++.+.+|.+-+.- . ..+-|.++|++|.|||-+|++|+.+.. ..|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs---------L~FlSVKGP--- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS---------LNFLSVKGP--- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce---------eeEEeecCH---
Confidence 4556889999999887632 1 356889999999999999999998875 344555443
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (831)
+++... -..+++...+.+.+.-..++++|.+|.+++
T Consensus 740 -ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 -ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 221111 122334444444444456999999999875
No 254
>PRK06696 uridine kinase; Validated
Probab=96.24 E-value=0.007 Score=60.95 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 157 GLESTLDKVWSCLG---EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 157 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|++-+++|.+.+. .+...+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35666777777764 35688999999999999999999998874
No 255
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0061 Score=57.71 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=69.0
Q ss_pred cccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCC--CCCCCCcccccCCC
Q 003317 641 CTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCS--KLRDLTWLALAPNV 718 (831)
Q Consensus 641 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~l~~l~~l~~L 718 (831)
+...++++++.- .....+..++.|..|.+..|.+..+.+.... .+++|+.|.|.+++ .+.++.++..+|.|
T Consensus 43 ~~d~iDLtdNdl---~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~----~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDL---RKLDNLPHLPRLHTLLLNNNRITRIDPDLDT----FLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccccch---hhcccCCCccccceEEecCCcceeeccchhh----hccccceEEecCcchhhhhhcchhccCCcc
Confidence 444555555432 2223677788999999988877766544332 47889999998864 34456677888999
Q ss_pred ceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 719 RNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 719 ~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
++|.+-+++ +++... +..--+-.+|+|+.|++..-
T Consensus 116 ~~Ltll~Np-v~~k~~----YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKN----YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCc-hhcccC----ceeEEEEecCcceEeehhhh
Confidence 999988854 433321 11114557889999988764
No 256
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.22 E-value=0.0065 Score=63.70 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.....++|+|++|+|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999975
No 257
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.22 E-value=0.34 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.++|..|+||||++..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 258
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.028 Score=57.44 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
...-+.++|.+|+|||.||.++.++.. ..--.+.++ +..++..++...... .....+|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~----~~g~sv~f~------~~~el~~~Lk~~~~~----------~~~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL----KAGISVLFI------TAPDLLSKLKAAFDE----------GRLEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH----HcCCeEEEE------EHHHHHHHHHHHHhc----------CchHHHHHH
Confidence 677899999999999999999999974 322344555 455666666655532 111122222
Q ss_pred HHcCCcEEEEEcCCCC
Q 003317 253 VLSKKKFVLLLDDMWK 268 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~ 268 (831)
.++ +-=||||||+..
T Consensus 164 ~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 164 ELK-KVDLLIIDDIGY 178 (254)
T ss_pred Hhh-cCCEEEEecccC
Confidence 222 234899999864
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.17 E-value=0.034 Score=52.65 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
++.|+|.+|+||||+++.+..... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~----~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA----TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH----hcCCEEEEEECCcchH
Confidence 468999999999999999998875 3445678887766543
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.027 Score=58.78 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
..+++.|+|++|+||||++..++.... .+..-..+..++.... ....+.+....+.++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~--~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV--LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH
Confidence 457999999999999999999988774 2211134555554321 1223344444555554432 2233344444443
Q ss_pred HHHcCCcEEEEEcCC
Q 003317 252 RVLSKKKFVLLLDDM 266 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv 266 (831)
. +.+ .=+|++|..
T Consensus 269 ~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 R-LRD-KDLILIDTA 281 (282)
T ss_pred H-ccC-CCEEEEeCC
Confidence 3 333 347777753
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.013 Score=65.58 Aligned_cols=71 Identities=30% Similarity=0.229 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF- 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~- 251 (831)
...-|.|.|+.|+|||+||+.+++.+. ++..-.+..|+++.-. ....+.....+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~---k~~~~hv~~v~Cs~l~---------------------~~~~e~iQk~l~~ 485 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS---KDLIAHVEIVSCSTLD---------------------GSSLEKIQKFLNN 485 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc---cccceEEEEEechhcc---------------------chhHHHHHHHHHH
Confidence 456889999999999999999999985 5566667777776541 122222233332
Q ss_pred ---HHHcCCcEEEEEcCCC
Q 003317 252 ---RVLSKKKFVLLLDDMW 267 (831)
Q Consensus 252 ---~~l~~k~~LlVlDdv~ 267 (831)
+.+.-.+-+|||||++
T Consensus 486 vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 486 VFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHHHHhhCCcEEEEcchh
Confidence 3445688999999986
No 262
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.15 E-value=0.03 Score=59.23 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=41.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcc-CC-CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSR-KD-DFDVVIWVVVSKDLKIERIQDDIWKKIGL 233 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (831)
...++.|+|.+|+|||||+..++....-.. .+ .-..++|++....++... +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 578999999999999999999876432000 11 123679999888777775 4445565554
No 263
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00058 Score=77.98 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCCcccccccCcCcc-----chhhhcCCcccEEeccCC-CCCCCCC---hhhhcCCccCcEeeecccc
Q 003317 536 CPDLQTLFLKGINEL-----PRELKALVNLKYLNLDHT-TFLHPIP---SPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 536 ~~~Lr~L~L~~~~~l-----p~~i~~L~~Lr~L~L~~~-~~l~~lp---~~~i~~L~~L~~L~l~~~~ 594 (831)
+++|+.|.+.+...+ -.....+++|+.|++++| ..+...| ......+.+|+.|+++.|.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 566666666652222 233455666666666652 1222222 1112344556666666554
No 264
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.11 E-value=0.018 Score=69.66 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=60.1
Q ss_pred CCcccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-------E--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..- +.-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~----~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF----GSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----CCccceEEEEchhccccccH
Confidence 4568999999999887742 1 234677899999999999999998753 11223344444443222111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCC
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKF-VLLLDDMWK 268 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 268 (831)
. .-++.+.+ ....+. ...+.+.++.++| +++||++..
T Consensus 585 ~----~l~g~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 585 S----KLIGSPPG-YVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred H----HhcCCCCc-ccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 1 11222111 011111 1234455555654 889999975
No 265
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.19 Score=53.68 Aligned_cols=176 Identities=11% Similarity=0.028 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC----
Q 003317 160 STLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLC---- 234 (831)
Q Consensus 160 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~---- 234 (831)
..-+++.+.+..+. ...+.+.|+.|+||+++|..++...-.. ..-+. ...+.-.-.+.+.. ...+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~--~~~~~-------~~Cg~C~sC~~~~~-g~HPD~~~ 78 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ--QPQGH-------KSCGHCRGCQLMQA-GTHPDYYT 78 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC--CCCCC-------CCCCCCHHHHHHHc-CCCCCEEE
Confidence 34566777776654 5688899999999999999998876311 11000 00000011111110 0000
Q ss_pred ---CCCCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCC-hhHHhh-cc
Q 003317 235 ---DNSWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRF-VEVCGA-MK 302 (831)
Q Consensus 235 ---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~ 302 (831)
.........++.. .+.+.+ .+++=++|+|+++... ....+...+-.-..++.+|++|.+ ..+... .+
T Consensus 79 i~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 79 LTPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000112233322 233333 2455689999987542 233333233222334555555554 445432 33
Q ss_pred CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
....+.+.+++.++..+.+.+..+ ...+.+..++..++|.|...
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~--------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT--------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC--------CCHHHHHHHHHHcCCCHHHH
Confidence 456789999999999887765321 11233678899999999644
No 266
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.07 E-value=0.038 Score=56.16 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
.-+++.|.|.+|+|||++|.++....- ..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~----~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL----QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH----HcCCcEEEEEeeC--CHHHHHHHH
Confidence 568999999999999999998766542 2345678887655 455555543
No 267
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.07 E-value=0.0072 Score=67.15 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=41.3
Q ss_pred CCcccchHHHHHHHHHh------cCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCL------GEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+++|.++.+++|++.| .+...+++.++|++|+||||||+.+++-.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 35789999999999988 234678999999999999999999999875
No 268
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.029 Score=59.82 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK--IERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
..++|+++|++|+||||++..++.... ... ..+..++. +.+. ..+-++...+.++.+.. ...+...+...+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~G-kkVglI~a-Dt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKK-KTVGFITT-DHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcC-CcEEEEec-CCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHH
Confidence 357999999999999999999988764 122 23444443 2332 33334445555554432 123455555544
Q ss_pred HHHHcC-CcEEEEEcCCC
Q 003317 251 FRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 251 ~~~l~~-k~~LlVlDdv~ 267 (831)
...-.. +.=++++|-..
T Consensus 313 ~~lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 313 TYFKEEARVDYILIDTAG 330 (436)
T ss_pred HHHHhccCCCEEEEeCcc
Confidence 443222 23367778663
No 269
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.07 E-value=0.055 Score=50.48 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC---CCCHHHHHHHHHHHhC---CCC-CCCCCCCHHH--
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK---DLKIERIQDDIWKKIG---LCD-NSWRSKSLED-- 245 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~---~~~-~~~~~~~~~~-- 245 (831)
..|-|++..|.||||+|...+-+.. ++=..+.++..-. .......++.+ ..+. ... ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~----~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL----GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHH
Confidence 4788999999999999998887764 3333455544333 23333333333 0000 000 0001111111
Q ss_pred -----HHHHHHHHHcCCcE-EEEEcCCCCc-----ccccccccCCCCCCCCcEEEEEcCChh
Q 003317 246 -----KAVDIFRVLSKKKF-VLLLDDMWKR-----VDLTQLGVPLPSPTTASKVVFTTRFVE 296 (831)
Q Consensus 246 -----~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~~ 296 (831)
.....++.+....| |||||++-.. ...+.+...+.....+.-+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22233444444444 9999998543 223333333444445678999999753
No 270
>PRK04132 replication factor C small subunit; Provisional
Probab=96.04 E-value=0.15 Score=60.51 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=90.8
Q ss_pred CCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEE
Q 003317 182 MGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFV 260 (831)
Q Consensus 182 ~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 260 (831)
|.++||||+|..++++.- ...+ ..++-++.|+...... .++++..+....+ . -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~---g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~---~-------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELF---GENWRHNFLELNASDERGINV-IREKVKEFARTKP---I-------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhh---cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC---c-------------CCCCCEE
Confidence 778999999999999863 1222 2466677776545443 3344433221100 0 0124579
Q ss_pred EEEcCCCCcc--cccccccCCCCCCCCcEEEEEcC-ChhHHhh-ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCCh
Q 003317 261 LLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTR-FVEVCGA-MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDI 336 (831)
Q Consensus 261 lVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 336 (831)
+|+|+++... ....+...+-.....+++|.+|. ...+... .+....+++.+++.++-...+.+.+...... -.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~---i~ 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE---LT 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---CC
Confidence 9999998653 34444333332233455555444 4444322 2335789999999999988888776543311 12
Q ss_pred HHHHHHHHHHhCCCchHHH
Q 003317 337 PELAETVTKECGGLPLALI 355 (831)
Q Consensus 337 ~~~~~~I~~~c~GlPlai~ 355 (831)
.+....|++.++|.+..+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4578899999999885443
No 271
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.021 Score=58.04 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
-++|.++|++|.|||+|.++++++..-+..+.+....-+.++. ..+....... ...-...+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 4899999999999999999999998611234444334443332 2232222222 344566777888888
Q ss_pred HcCCcE--EEEEcCCCC
Q 003317 254 LSKKKF--VLLLDDMWK 268 (831)
Q Consensus 254 l~~k~~--LlVlDdv~~ 268 (831)
++++.. ++.+|.|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 877654 556788854
No 272
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.02 E-value=0.026 Score=63.61 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=40.0
Q ss_pred cccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 155 TVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
++--.+-++++..||.+ ...+++.+.|++|+||||.++.+++.. .|+..-|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEecC
Confidence 34445567788888854 246799999999999999999999885 366666754
No 273
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.01 E-value=0.031 Score=54.46 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHH----hcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSC----LGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.|..++.+++- +.+...--|.+||.-|.|||+|++++.+.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 5678988888877753 3444667889999999999999999999975
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.00 E-value=0.029 Score=56.38 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=73.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCC-----CCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-----DLKIERIQDDIWKKIGLCDNS-----WRSKS 242 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~ 242 (831)
+..+++|||.+|+||||+++.+..-.. .-...+++...+ .....+-..++++.++..... ..-..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 567999999999999999999987653 233334333221 222345566777777654311 11112
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCccc---ccccccCCC--CCCCCcEEEEEcCChhHHhhccC
Q 003317 243 LEDKAVDIFRVLSKKKFVLLLDDMWKRVD---LTQLGVPLP--SPTTASKVVFTTRFVEVCGAMKA 303 (831)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~ 303 (831)
-+...-.+.+.+.-++-++|.|..-+.-+ -..+...+. ....|-..+..|-+-.|++.+..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22222345667788999999998654321 122211111 12345667888888887776543
No 275
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.99 E-value=0.029 Score=53.99 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++.++|++|+||||+++.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998875
No 276
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.044 Score=58.85 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=78.9
Q ss_pred cccchHHHHHHHHHhcC-CCceE-EEEEcCCCCcHHHHHHHHHHhhhhcc----CC-------------CCCEEEEEEeC
Q 003317 155 TVGLESTLDKVWSCLGE-ENVGI-IGLYGMGGVGKTTLLTQINNKFLDSR----KD-------------DFDVVIWVVVS 215 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~----~~-------------~F~~~~wv~~s 215 (831)
++|-+....++..+... +..+. +-++|+.|+||||+|..+.+...... .. ....+..+.-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 46667777778777763 44444 99999999999999999999874110 00 12334444444
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc--ccccccCCCCCCCCcEEEE
Q 003317 216 KDLK---IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD--LTQLGVPLPSPTTASKVVF 290 (831)
Q Consensus 216 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~ilv 290 (831)
.... ..+..+++.+....... .++.-++++|+++.... -..+...+-.....+.+|+
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 4433 23444444444332210 35677999999976422 2222222323344567777
Q ss_pred EcCCh-hHHhh-ccCCceEEcCCCC
Q 003317 291 TTRFV-EVCGA-MKAHEYFKVECLA 313 (831)
Q Consensus 291 TtR~~-~v~~~-~~~~~~~~l~~L~ 313 (831)
+|... .+... -.....+++.+.+
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EcCChhhccchhhhcceeeecCCch
Confidence 66633 33322 2234566776633
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.97 E-value=0.0086 Score=58.96 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
.+|.|+|+.|+||||++..+..... ......++.--.. .+.... ...+..+-. ...+.......++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~----~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~------vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN----KNKTHHILTIEDPIEFVHES-KRSLINQRE------VGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh----hcCCcEEEEEcCCccccccC-ccceeeecc------cCCCccCHHHHHHHH
Confidence 4789999999999999998887754 2333333321111 110000 001111100 011123345567777
Q ss_pred HcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHH
Q 003317 254 LSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVC 298 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 298 (831)
++..+=.+++|++.+.+........ ...|..++.|+-..++.
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 7777889999999776554433222 12355577777765543
No 278
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.97 E-value=0.05 Score=57.97 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDD----FDVVIWVVVSKDLKIERIQDDIWKKIGL 233 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (831)
...++-|+|++|+|||+++.+++-... .... =..++|++....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~--~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ--LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc--cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 568999999999999999999987643 1111 1479999998888877665 44455543
No 279
>PRK06547 hypothetical protein; Provisional
Probab=95.93 E-value=0.011 Score=56.44 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 164 KVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999988753
No 280
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.90 E-value=0.039 Score=60.59 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCDNSW-RSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 250 (831)
...++.++|.+|+||||.|..++.... .+..+ .++-|++... ....+-+.....+.+.+.... ...+..+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~--~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK--KKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 467999999999999999998887753 11222 3333433221 122344455556655442211 123344444444
Q ss_pred HHHHcCCcE-EEEEcCCC
Q 003317 251 FRVLSKKKF-VLLLDDMW 267 (831)
Q Consensus 251 ~~~l~~k~~-LlVlDdv~ 267 (831)
.+....+.| ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444445 77777653
No 281
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.033 Score=53.38 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcc--CC---CCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCC---C-CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSR--KD---DFD--VVIWVVVSKDLKIERIQDDIWKKIGLCDN---S-WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~---~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~-~~~~ 241 (831)
.-.+++|+|+.|+|||||.+.+..+.. .+ .. .|. .+.|+ .+ .+.+..++.... . ...-
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G-~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASG-KARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCC-cEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcC
Confidence 457999999999999999998864321 11 11 111 12332 22 456676665321 0 0111
Q ss_pred CH-HHHHHHHHHHHcCC--cEEEEEcCCCCccc---ccccccCCCC-CCCCcEEEEEcCChhHHhhccCCceEEc
Q 003317 242 SL-EDKAVDIFRVLSKK--KFVLLLDDMWKRVD---LTQLGVPLPS-PTTASKVVFTTRFVEVCGAMKAHEYFKV 309 (831)
Q Consensus 242 ~~-~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l 309 (831)
+. +...-.+...+-.+ +-++++|+.-..-+ .+.+...+.. ...|..||++|.+.+.... +...+.+
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 11 22222344445555 67888898754211 2222222211 1246678888888766542 3444444
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=95.89 E-value=0.037 Score=60.74 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.++|.+|+||||.+..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999988887764
No 283
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.89 E-value=0.051 Score=63.65 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRV 253 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (831)
.+-|.++|++|+|||++|+.+++... .+| +.++.+. +. ... ...........+...
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~----~~f---~~is~~~------~~----~~~-------~g~~~~~~~~~f~~a 240 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAK----VPF---FTISGSD------FV----EMF-------VGVGASRVRDMFEQA 240 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC----CCE---EEEehHH------hH----Hhh-------hcccHHHHHHHHHHH
Confidence 34599999999999999999988764 333 2222111 11 111 011222233333333
Q ss_pred HcCCcEEEEEcCCCCcc------------cc----cccccCCCC--CCCCcEEEEEcCChhHHhh-c----cCCceEEcC
Q 003317 254 LSKKKFVLLLDDMWKRV------------DL----TQLGVPLPS--PTTASKVVFTTRFVEVCGA-M----KAHEYFKVE 310 (831)
Q Consensus 254 l~~k~~LlVlDdv~~~~------------~~----~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~ 310 (831)
-...+.+|++|+++... .. ..+...+.. ...+.-+|.||...+.... . .....+.+.
T Consensus 241 ~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 241 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 44578999999986531 01 111111111 1234445557765543221 1 124567888
Q ss_pred CCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC
Q 003317 311 CLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL 350 (831)
Q Consensus 311 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 350 (831)
..+.++-.++++.+........+.+ ...+++.+.|.
T Consensus 321 ~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 321 LPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 8888888888888775433222222 23466666664
No 284
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.87 E-value=0.011 Score=69.73 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468989999888887752 134578999999999999999998875
No 285
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.026 Score=55.01 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
.+.+|+|.|.+|+||||+|+.++..+. ..+-.+ ++...-+. ..-............+.....+.+-+.+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~----~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG----VEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC----cCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHH
Confidence 457999999999999999999999875 232111 11111110 11111111122222222245566677777877
Q ss_pred HHcCCc
Q 003317 253 VLSKKK 258 (831)
Q Consensus 253 ~l~~k~ 258 (831)
.+.+++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 777776
No 286
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.019 Score=59.44 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHH
Q 003317 157 GLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQIN 195 (831)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~ 195 (831)
+|..+-.--+++|.++.+..|.+.|.+|.|||-||-+..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 455555556688999999999999999999998887643
No 287
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.04 Score=59.14 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
...++.++|+.|+||||++..+..... .+.....+..++... .....+-++...+.++.+... ..+..+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~--~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l- 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV--MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL- 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-
Confidence 457999999999999999999998764 122223455555322 234556666677777764421 12222222223
Q ss_pred HHHcCCcEEEEEcCCC
Q 003317 252 RVLSKKKFVLLLDDMW 267 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (831)
..+.++ =++++|...
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 234454 455688874
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.82 E-value=0.052 Score=53.31 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=46.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC---EEEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCCCHHHHHHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD---VVIWVVVSKDLKIERIQDDIWKKI--GLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l 250 (831)
||+|.|++|+||||+|+.+..... ..... ....+............. .-... ..........+.+.+...|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---KRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---TCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---ccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHH
Confidence 799999999999999999999885 22332 233333222222222211 11111 1111222456677777788
Q ss_pred HHHHcCCcEEE
Q 003317 251 FRVLSKKKFVL 261 (831)
Q Consensus 251 ~~~l~~k~~Ll 261 (831)
.....++..-+
T Consensus 77 ~~L~~g~~i~~ 87 (194)
T PF00485_consen 77 KALKNGGSIEI 87 (194)
T ss_dssp HHHHTTSCEEE
T ss_pred HHHhCCCcccc
Confidence 77666666433
No 289
>PTZ00494 tuzin-like protein; Provisional
Probab=95.81 E-value=3.6 Score=44.56 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=97.9
Q ss_pred CCcccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
..+|.|+.+-..+.+.|.. ...+++.+.|.-|+||++|.+....+.. -..++|.+... ++-++.+.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-------~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-------VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-------CCeEEEEecCC---cchHHHHHH
Confidence 5678998877766666643 4789999999999999999998887754 23577777766 567889999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHH---HHHcCCcEEEEEcCCCCccccccc---ccCCCCCCCCcEEEEEcCChhHHhh---
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIF---RVLSKKKFVLLLDDMWKRVDLTQL---GVPLPSPTTASKVVFTTRFVEVCGA--- 300 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~~--- 300 (831)
.++.+.-+.-.+-.+...+..+ ....++.-+||+-=- +-..+..+ ...+.....-|.|++----+.+-..
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 9987643212222333333222 234466666665421 11111111 0112223345667764443332111
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHh
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
...-..|.+++++.++|.++-.+..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1123468899999999998877654
No 290
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.80 E-value=1.2 Score=48.03 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK--DLKIERIQDDIWKKIGLCDN 236 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~ 236 (831)
...||-.+|.-|.||||.|-.+++.++ . ....+-+...+ .+-..+-++.+..+++.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk----k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK----K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH----H-cCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 468999999999999999999999986 2 22223333333 33455777888888887654
No 291
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.16 Score=56.26 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
...-|.++|++|+|||-||++|+|... -.| ++|-.. +++.... .+++......+++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag----~NF-----isVKGP----ELlNkYV-----------GESErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAG----ANF-----ISVKGP----ELLNKYV-----------GESERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhcc----Cce-----EeecCH----HHHHHHh-----------hhHHHHHHHHHHH
Confidence 467788999999999999999999975 444 333332 1211111 1223333333334
Q ss_pred HHcCCcEEEEEcCCCCc-------ccc------cccccCCCC--CCCCcEEEEEcCChhHH-----hhccCCceEEcCCC
Q 003317 253 VLSKKKFVLLLDDMWKR-------VDL------TQLGVPLPS--PTTASKVVFTTRFVEVC-----GAMKAHEYFKVECL 312 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~-------~~~------~~l~~~l~~--~~~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L 312 (831)
.-..-+++|.+|.++.. ..| ..+..-+.. ...|--||-.|-..++- +.-.-....-++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 44568999999998642 111 112111211 22355556555444332 11122445667777
Q ss_pred ChHHHHHHHHHHhhh--cccCCCCChHHHHHHHHHHhCCCc
Q 003317 313 AHEKAWILFQEHVER--QTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 313 ~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
+.+|-.++++..... .....+-++.++|+. .+|.|..
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888899888763 333445566666654 3555654
No 292
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.72 E-value=0.086 Score=56.22 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKT-TLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
..++|.+||+.|+||| |||+..+.-.. ...=..+..++... .....+-++..++-++.+.. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~---~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM---LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh---hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHH
Confidence 4899999999999997 66666655541 23334566665433 23445666666777776542 233444444444
Q ss_pred HHHHcCCcEEEEEcCC
Q 003317 251 FRVLSKKKFVLLLDDM 266 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv 266 (831)
... ++.. +|.+|-+
T Consensus 277 ~~l-~~~d-~ILVDTa 290 (407)
T COG1419 277 EAL-RDCD-VILVDTA 290 (407)
T ss_pred HHh-hcCC-EEEEeCC
Confidence 332 3333 4444554
No 293
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.70 E-value=0.061 Score=56.33 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++-|+|+.|+||||||.++..... ..-..++|+.....++.. .++++|...+. ......++....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q----~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ----KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH----HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh----cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHH
Confidence 457999999999999999999998765 334678999988876653 44555543321 123445666666
Q ss_pred HHHHHcCC-cEEEEEcCCCCc
Q 003317 250 IFRVLSKK-KFVLLLDDMWKR 269 (831)
Q Consensus 250 l~~~l~~k-~~LlVlDdv~~~ 269 (831)
..+.++.. --++|+|.|-..
T Consensus 123 ~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHhhcccccEEEEecCccc
Confidence 66666544 348999998654
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.67 E-value=0.057 Score=58.37 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW---RSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 249 (831)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++ ..-++.++...+.. ...+.++....
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a----~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA----KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILAS 153 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH----hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHH
Confidence 467999999999999999999988764 22346778765433 3333 22344555432211 12233333333
Q ss_pred HHHHHcCCcEEEEEcCCC
Q 003317 250 IFRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~~k~~LlVlDdv~ 267 (831)
+. ..+.-++|+|.+.
T Consensus 154 i~---~~~~~lVVIDSIq 168 (372)
T cd01121 154 IE---ELKPDLVIIDSIQ 168 (372)
T ss_pred HH---hcCCcEEEEcchH
Confidence 32 2366688999874
No 295
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.015 Score=53.00 Aligned_cols=26 Identities=42% Similarity=0.461 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.--|+|.|++|+||||+++.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.63 E-value=0.091 Score=53.35 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---------------
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS--------------- 237 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--------------- 237 (831)
..+++.|+|.+|+|||++|.++..... ..=..++|++.... ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~----~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL----KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH----hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 568999999999999999999976543 23457888887654 45555543 334321110
Q ss_pred ---CCCCCHHHHHHHHHHHHcC-CcEEEEEcCCC
Q 003317 238 ---WRSKSLEDKAVDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 238 ---~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (831)
......++....+.+.+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666777777754 55589999875
No 297
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.62 E-value=0.02 Score=54.37 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=24.9
Q ss_pred cccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCC
Q 003317 559 NLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 559 ~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
+.-.+||++| .+..++. +..+..|.+|.+++|.|..
T Consensus 43 ~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNRITR 78 (233)
T ss_pred ccceeccccc-chhhccc--CCCccccceEEecCCccee
Confidence 4556777777 5666664 6677777777777777766
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.62 E-value=0.028 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988753
No 299
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.022 Score=51.97 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLC 234 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (831)
+|.|-|++|+||||+|+.+.++.. -.| .+...++++|++..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g----l~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG----LKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC----Cce-----------eeccHHHHHHHHHcCCC
Confidence 689999999999999999999875 111 14457889999888764
No 300
>PHA00729 NTP-binding motif containing protein
Probab=95.58 E-value=0.017 Score=57.07 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.9
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 164 KVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999999875
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.57 E-value=0.042 Score=53.23 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE---eCCCCCHHHHHH------HHHHHhCCCCC---CC-C
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV---VSKDLKIERIQD------DIWKKIGLCDN---SW-R 239 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~---~~-~ 239 (831)
.-.+++|+|..|.|||||++.++.... .....+++. +.. .+...... ++++.++.... .. .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNE 97 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCccc
Confidence 567999999999999999999987643 233334432 221 12222211 24555554321 00 1
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc---ccccccCCCC--CCCCcEEEEEcCChhHH
Q 003317 240 SKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD---LTQLGVPLPS--PTTASKVVFTTRFVEVC 298 (831)
Q Consensus 240 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~ilvTtR~~~v~ 298 (831)
-..-+...-.+...+-..+-++++|+.-..-+ ...+...+.. ...|..||++|.+.+..
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11222333345556667788999998754221 2222222211 11256788888876544
No 302
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.57 E-value=0.0011 Score=58.40 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 554 LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 554 i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
+....+|...+|++| .++.+|+..-.+.+.+.+|++.+|.+.. .+.++..++.|+.+++..+.+.
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisd--------vPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISD--------VPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhh--------chHHHhhhHHhhhcccccCccc
Confidence 344455555566666 4566665533344456666666665554 4445555555555555555544
No 303
>PTZ00035 Rad51 protein; Provisional
Probab=95.57 E-value=0.1 Score=55.83 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccC----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRK----DDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 241 (831)
...++.|+|.+|+|||||+..++-... .. ..=..++|++....++...+ .++++.++..... ....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~q--lp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQ--LPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhc--cccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccC
Confidence 568999999999999999998875542 11 12236779998877777663 4456665543210 0122
Q ss_pred CHHHHHHHH---HHHHc-CCcEEEEEcCCC
Q 003317 242 SLEDKAVDI---FRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~~~~~~l---~~~l~-~k~~LlVlDdv~ 267 (831)
+.++....+ ...+. .+--|||+|.+.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 333333333 23333 344588899874
No 304
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.54 E-value=0.11 Score=55.49 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhh-ccCC-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLD-SRKD-DFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSKSL 243 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (831)
...++-|+|.+|+|||+++..++-...- ...+ .-..++|++....|+.+.+ .+|++.++..... ....+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 5678999999999999999988755320 0011 1237999999999888776 4567766643211 011233
Q ss_pred HHHHHHHH---HHHc-CCcEEEEEcCCC
Q 003317 244 EDKAVDIF---RVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 244 ~~~~~~l~---~~l~-~k~~LlVlDdv~ 267 (831)
++....+. ..+. .+.-|||+|.+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33333332 2232 345588888874
No 305
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.52 E-value=0.011 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (831)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998883
No 306
>PRK04328 hypothetical protein; Provisional
Probab=95.51 E-value=0.057 Score=55.27 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD 217 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~ 217 (831)
.-+++.|.|.+|+|||+||.++..... ..-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~----~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL----QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----hcCCcEEEEEeeCC
Confidence 568999999999999999999766642 23456788877663
No 307
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.40 E-value=0.099 Score=54.08 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCCCCC-CCCCCHHH-HH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI--ERIQDDIWKKIGLCDNS-WRSKSLED-KA 247 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~-~~ 247 (831)
.+.++|.++|++|+||||++..++.... ..-..+..++.. .+.. .+-+....+..+.+... ....+... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~----~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK----KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH----hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 3568999999999999999999988765 222355556543 2333 23344455555533110 01122222 22
Q ss_pred HHHHHHHcCCcEEEEEcCCC
Q 003317 248 VDIFRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 248 ~~l~~~l~~k~~LlVlDdv~ 267 (831)
..+.....+..=++++|-.-
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCC
Confidence 33444333444578888763
No 308
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.35 Score=51.47 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
-...+.++|+.|+||||+|+.+....-
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 456788999999999999999988763
No 309
>PRK07667 uridine kinase; Provisional
Probab=95.40 E-value=0.021 Score=56.01 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=30.0
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 162 LDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 162 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+.|.+.+.. +...+|+|-|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555543 3558999999999999999999998875
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.39 E-value=0.085 Score=50.28 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCC--C---CEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDD--F---DVVIWVVVSKDLK--IERIQDDIWKKIGLCDNSWRSKSLED 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--F---~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (831)
.-.+++|+|..|.|||||++.+...... ..+. + ..+.++ .+... ...+...+... .. ..-..-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~ 97 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQ 97 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHH
Confidence 5679999999999999999999887531 1111 1 112222 23221 11333333210 11 01222233
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCCccc---ccccccCCCCCCCCcEEEEEcCChhHH
Q 003317 246 KAVDIFRVLSKKKFVLLLDDMWKRVD---LTQLGVPLPSPTTASKVVFTTRFVEVC 298 (831)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~ilvTtR~~~v~ 298 (831)
..-.+...+-.++=++++|+--..-+ ...+...+... +..||++|.+....
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 33344555566777888998643221 12221122111 35577777776654
No 311
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.37 E-value=0.014 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 312
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.37 E-value=0.052 Score=50.35 Aligned_cols=26 Identities=42% Similarity=0.598 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 55799999999999999999998765
No 313
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.021 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 314
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.36 E-value=0.016 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 315
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.35 Score=47.34 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
+.+-+.++|++|.|||-||++|+++.. .-|+.||.. ++.+..+.. -......+.-
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~---------c~firvsgs----elvqk~ige------------gsrmvrelfv 234 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGS----ELVQKYIGE------------GSRMVRELFV 234 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcc---------eEEEEechH----HHHHHHhhh------------hHHHHHHHHH
Confidence 577889999999999999999998854 344556553 222222211 0111122211
Q ss_pred HH-cCCcEEEEEcCCCCcc------------c----ccccccCCCC--CCCCcEEEEEcCChhHH-----hhccCCceEE
Q 003317 253 VL-SKKKFVLLLDDMWKRV------------D----LTQLGVPLPS--PTTASKVVFTTRFVEVC-----GAMKAHEYFK 308 (831)
Q Consensus 253 ~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~ilvTtR~~~v~-----~~~~~~~~~~ 308 (831)
.- ..-+..+..|.+++.. + ..++..-+.. ..+.-+||..|..-++. +.-.....++
T Consensus 235 marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkie 314 (404)
T KOG0728|consen 235 MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIE 314 (404)
T ss_pred HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccccccc
Confidence 11 3467788888876420 0 0011111111 23456777766544442 2222345678
Q ss_pred cCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHH
Q 003317 309 VECLAHEKAWILFQEHVERQTLESHPDIPELAETV 343 (831)
Q Consensus 309 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I 343 (831)
.++-+++.-.++++-+....+...--++..+|+++
T Consensus 315 fp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 315 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred CCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 88888887788887776554433334555555554
No 316
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.33 E-value=0.13 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876654
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.07 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 318
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.33 E-value=0.04 Score=50.75 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
|.++|++|+|||+||+.+++... ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-------~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-------RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-------CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-------cceEEEEeccccccccceee
Confidence 67999999999999999998863 23445678888887777643
No 319
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.13 Score=54.52 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCC-CCCCCHHHHH-H
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK--IERIQDDIWKKIGLCDNS-WRSKSLEDKA-V 248 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~ 248 (831)
...+|.++|+.|+||||++..++.... ...+ .++.+. .+.+. ..+-++..+..++.+... ....+....+ .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~---~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK---KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 468999999999999999998888765 2333 333343 33332 334456667777654321 1122222222 2
Q ss_pred HHHHHHcCCcEEEEEcCCCC
Q 003317 249 DIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~ 268 (831)
.+...-....=++++|-...
T Consensus 214 ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHhCCCCEEEEECCCc
Confidence 22222222222888888743
No 320
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.32 E-value=0.024 Score=55.93 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=68.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE----------------------eCCCC------------
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV----------------------VSKDL------------ 218 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~----------------------~s~~~------------ 218 (831)
.-.+|+|+|++|+|||||...+.--.++ -...+++. +.+.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p-----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP-----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC-----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 5579999999999999999988654321 11111111 11111
Q ss_pred ------------CHHHHHHHHHHHhCCCCC-----CCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc---ccccccccC
Q 003317 219 ------------KIERIQDDIWKKIGLCDN-----SWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR---VDLTQLGVP 278 (831)
Q Consensus 219 ------------~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~ 278 (831)
...+....+++.+++... ..+-..-++..-.+.+.+-..+-+|+.|+--.. ..-..+...
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 123344455566565421 112222334444566677778888899975321 111111111
Q ss_pred CC--CCCCCcEEEEEcCChhHHhhc
Q 003317 279 LP--SPTTASKVVFTTRFVEVCGAM 301 (831)
Q Consensus 279 l~--~~~~gs~ilvTtR~~~v~~~~ 301 (831)
+. ....|.-||+.|-+..+|..+
T Consensus 185 l~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 185 LRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 21 123477899999999998754
No 321
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.06 Score=54.05 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc---cC------CCC---CEEEEEEe----CCCC--CH--------------
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDS---RK------DDF---DVVIWVVV----SKDL--KI-------------- 220 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~------~~F---~~~~wv~~----s~~~--~~-------------- 220 (831)
.-..++|+|+.|.|||||.+.+..-..+. +. ..+ ..+.||.= ...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 44799999999999999999998843211 10 011 24555531 1111 11
Q ss_pred --------HHHHHHHHHHhCCCCC---CCCCCCH-HHHHHHHHHHHcCCcEEEEEcCCCCc------ccccccccCCCCC
Q 003317 221 --------ERIQDDIWKKIGLCDN---SWRSKSL-EDKAVDIFRVLSKKKFVLLLDDMWKR------VDLTQLGVPLPSP 282 (831)
Q Consensus 221 --------~~~~~~i~~~l~~~~~---~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~ 282 (831)
.+...+.++++++..- ....-+- +...-.|.+.|.+++=|++||.--.- ...-++...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 2444555555554321 1112222 22334566778889999999975332 222233333332
Q ss_pred CCCcEEEEEcCChhHHh
Q 003317 283 TTASKVVFTTRFVEVCG 299 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v~~ 299 (831)
.|+-||++|-+-....
T Consensus 188 -eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 -EGKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCCEEEEEeCCcHHhH
Confidence 2888999998865443
No 322
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.016 Score=57.19 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987763
No 323
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.28 E-value=0.063 Score=51.89 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.-.+++|+|..|+|||||++.+.....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 557899999999999999999987653
No 324
>PRK08233 hypothetical protein; Provisional
Probab=95.28 E-value=0.016 Score=56.35 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998763
No 325
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.28 E-value=0.029 Score=51.58 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~---~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK---RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh---HcCCceEEEEEccC
Confidence 5899999999999999999999985 35566665666555
No 326
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.28 E-value=0.024 Score=57.33 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+...+|+|.|++|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999998875
No 327
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.28 E-value=0.14 Score=51.69 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
.-.++.|.|.+|+||||+|.++..... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~----~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL----RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH----hcCCeEEEEEccC
Confidence 568999999999999999998776543 2235678887644
No 328
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.26 E-value=0.016 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998764
No 329
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.22 E-value=0.12 Score=53.07 Aligned_cols=128 Identities=17% Similarity=0.078 Sum_probs=68.7
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCCCC--
Q 003317 162 LDKVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG-LCDNS-- 237 (831)
Q Consensus 162 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~-- 237 (831)
.+.++..+.. +...-++|+|+.|+|||||.+.++.... .....+++.-.+- ...+-..++..... .+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEe-ecchhHHHHHHHhccccccccc
Confidence 3444444443 4567899999999999999999998753 2233333321110 00011123332222 11110
Q ss_pred --CCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHH
Q 003317 238 --WRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVC 298 (831)
Q Consensus 238 --~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 298 (831)
.+..+.......+...+. ..+-++++|.+...+.+..+...+ ..|..+|+||-+..+.
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 001111111223444443 578899999997666555554333 2477899999876653
No 330
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.19 E-value=0.1 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998864
No 331
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.18 Score=57.06 Aligned_cols=173 Identities=15% Similarity=0.120 Sum_probs=91.6
Q ss_pred CCcccchHHHHH---HHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDK---VWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.+..|.++.+++ +++.|.+. -.+-|..+|++|.|||.||+++..... -.| .+.|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~----VPF-----f~iSGS--- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----VPF-----FSISGS--- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC----CCc-----eeccch---
Confidence 345788776655 55666542 257789999999999999999999875 233 122221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc------------ccc----cccccCCCCCC-
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR------------VDL----TQLGVPLPSPT- 283 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~----~~l~~~l~~~~- 283 (831)
++.+.+ .........+...+..++-++.+++|.++.. +++ .++..-...++
T Consensus 218 -----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 -----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 111111 1112223334444555667899999988642 112 12211111122
Q ss_pred -CCcEEEEEcCChhHH-----hhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 284 -TASKVVFTTRFVEVC-----GAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 284 -~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
.|-.|+..|-..+|. +.-.-...+.++.-+-..-.+.++-++........-++. .|++.+-|.--|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 233333333334443 212224456666666666677777666544323223332 277777776544
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.17 E-value=0.11 Score=55.18 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD----DFDVVIWVVVSKDLKIERIQDDIWKKIGL 233 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 233 (831)
...++-|+|.+|+||||++.+++-... ... .=..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~--~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQ--LPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc--CCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 468999999999999999999987753 111 11379999998888877654 45555543
No 333
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.16 E-value=0.093 Score=51.93 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=56.1
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CC
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN----SW 238 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~ 238 (831)
.++.+.. ..-.-++|+|.+|+|||+|++.+.+... -+.++++.+++.. .+.++.+++...-..... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~------~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t 78 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD------ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAAT 78 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT------TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc------ccceeeeeccccchhHHHHHHHHhhccccccccccccc
Confidence 3444433 2446789999999999999999998853 3444788887653 455555555433111000 00
Q ss_pred CCCCHHH----------HHHHHHHHHcCCcEEEEEcCC
Q 003317 239 RSKSLED----------KAVDIFRVLSKKKFVLLLDDM 266 (831)
Q Consensus 239 ~~~~~~~----------~~~~l~~~l~~k~~LlVlDdv 266 (831)
.+.+... .++.++. .++..|+++||+
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred chhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhh
Confidence 1222211 1223333 689999999998
No 334
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.14 E-value=0.083 Score=46.71 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=34.4
Q ss_pred CcccchHHHHHHHHHhc----C---CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 154 PTVGLESTLDKVWSCLG----E---ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.++|.+-..+.+++.+. + +..-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676666666666553 2 356799999999999999999998884
No 335
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.13 E-value=0.018 Score=57.17 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998764
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.14 Score=54.57 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
+.+++.++|+.|+||||++..++.... .+ -..+.+++.... ....+-++...+.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHH
Confidence 568999999999999999999987764 12 234666665332 2234556666666665432 2334555544444
Q ss_pred HHHc-CCcEEEEEcCCC
Q 003317 252 RVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 252 ~~l~-~k~~LlVlDdv~ 267 (831)
..-. +..=+|++|-..
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 3321 334577778764
No 337
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.11 Score=56.45 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK--IERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
..++|.++|+.|+||||.+..++..+...-...-..+..++.. .+. ...-++..++.++.+.. ...........+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHH
Confidence 4579999999999999999998887641100122344555544 333 33346666666665432 233444444444
Q ss_pred HHHHcCCcEEEEEcCCC
Q 003317 251 FRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (831)
... ++.=++++|...
T Consensus 250 ~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 250 TQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHh--CCCCEEEEcCCC
Confidence 433 345588888874
No 338
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.11 E-value=0.032 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
..+|.|.|.+|+||||||+.+.+... ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~----~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF----ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH----HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEec
Confidence 35899999999999999999999986 3334455553
No 339
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.15 Score=54.08 Aligned_cols=96 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-
Q 003317 162 LDKVWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW- 238 (831)
Q Consensus 162 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~- 238 (831)
..++-+.|..+ .-.+|.|-|-+|+|||||..+++.+.. ..- .+++|+--+. ..+ .+--++.++.+.+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA----~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA----KRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH----hcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceE
Confidence 34444445443 568999999999999999999999985 222 6777754443 222 233456666544221
Q ss_pred --CCCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Q 003317 239 --RSKSLEDKAVDIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 239 --~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (831)
...+.+.....+.+ .++-++|+|.+..
T Consensus 151 l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 22334443333333 5788999999854
No 340
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.10 E-value=0.073 Score=62.31 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
..+++-|+|.+|+|||||+.+++.... ..-..++|+.....++. ..+++++...+. ....+.++....
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~----~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ----AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHH
Confidence 568999999999999999988766543 23356799988777763 367777764321 123445566666
Q ss_pred HHHHHcC-CcEEEEEcCCC
Q 003317 250 IFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~~-k~~LlVlDdv~ 267 (831)
+...++. +.-|||+|.+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 6666644 56699999985
No 341
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.09 E-value=0.18 Score=60.11 Aligned_cols=180 Identities=16% Similarity=0.207 Sum_probs=86.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCC------------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDD------------FDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRS 240 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~------------F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (831)
+.+++.|+|+.|.||||+.+.+....-....+. |+.+ +..++.. +.+...+
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~-------~si~~~L--------- 383 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDE-------QSIEQNL--------- 383 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChH-------hHHhhhh---------
Confidence 457999999999999999999876621000111 1111 1111111 1111111
Q ss_pred CCHHHHHHHHHHHHc--CCcEEEEEcCCCCccc---ccc----cccCCCCCCCCcEEEEEcCChhHHhhccCCceEEcCC
Q 003317 241 KSLEDKAVDIFRVLS--KKKFVLLLDDMWKRVD---LTQ----LGVPLPSPTTASKVVFTTRFVEVCGAMKAHEYFKVEC 311 (831)
Q Consensus 241 ~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~----l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~ 311 (831)
.+...-...+...+. ..+-|+++|..-.-.+ -.. +...+. ..|+.+|+||-..++.........+.-..
T Consensus 384 StfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~ 461 (771)
T TIGR01069 384 STFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENAS 461 (771)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeE
Confidence 011111112223332 4789999999865322 111 222221 25788999999887754322221111111
Q ss_pred CChHH-HHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhc
Q 003317 312 LAHEK-AWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRR 379 (831)
Q Consensus 312 L~~~e-~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 379 (831)
+..++ ... |..+.. .+ . + -...|-.|++++ |+|-.|.--|..+.. ....+...+++.+..
T Consensus 462 ~~~d~~~l~-p~Ykl~-~G--~-~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 462 VLFDEETLS-PTYKLL-KG--I-P-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred EEEcCCCCc-eEEEEC-CC--C-C-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 11110 000 000000 00 0 0 123477787776 788888777777654 344456666655543
No 342
>PRK06762 hypothetical protein; Provisional
Probab=95.08 E-value=0.02 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 343
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.07 E-value=0.073 Score=52.83 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-----EEEEEEeCCCCCHHHH--HHHHHHHhCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-----VVIWVVVSKDLKIERI--QDDIWKKIGLCD 235 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-----~~~wv~~s~~~~~~~~--~~~i~~~l~~~~ 235 (831)
....|.++||+|+||||..|.++.+........|- .+.-+....+.|+++. .++.+++.++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 46688899999999999999999887622111111 1112233445566654 457777776543
No 344
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.07 E-value=0.11 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998863
No 345
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.36 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.-+-|..+|++|.|||-||++|+....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 457889999999999999999999874
No 346
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.11 Score=53.40 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCCCCCHH---HHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK-IGLCDNSWRSKSLE---DKAV 248 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~ 248 (831)
..+++=|+|+.|+||||+|.+++-... ..-..++|++.-..+++..+.. +... +.. -.-....+.+ +.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq----~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~-l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ----KPGGKAAFIDTEHALDPERAKQ-LGVDLLDN-LLVSQPDTGEQQLEIAE 132 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh----cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcc-eeEecCCCHHHHHHHHH
Confidence 568999999999999999999887764 4455899999999888776543 3333 210 0001222333 3344
Q ss_pred HHHHHHcCCcEEEEEcCCCC
Q 003317 249 DIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~ 268 (831)
.+......+--|+|+|.+-.
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHhccCCCCEEEEecCcc
Confidence 44444444456999999843
No 347
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.02 E-value=0.024 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.740 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988875
No 348
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.99 E-value=0.041 Score=63.51 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG 232 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (831)
+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...++..+|..-+. .+...+++.++.++|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~---~~~~~~~~~~~np~-~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP---KEELQDILVYPNPE-DPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC---hHhHHHheEeeCCC-cchHHHHHHHHHhcC
Confidence 56789999888888777654 4789999999999999999998763 34568888876644 367777777776655
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.97 E-value=0.38 Score=54.43 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc---cC-CCCCEEEEEEeCC---------------CC-C-HHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDS---RK-DDFDVVIWVVVSK---------------DL-K-IERIQDDIWKKI 231 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-~~F~~~~wv~~s~---------------~~-~-~~~~~~~i~~~l 231 (831)
.-..|+|+|+.|+|||||.+.+.....+. +. +.--.+.++.-.. .+ + .....+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 55789999999999999999997765311 11 1111222322111 01 1 134555556666
Q ss_pred CCCCCCC----CCCCHHH-HHHHHHHHHcCCcEEEEEcCCCCcccccc---cccCCCCCCCCcEEEEEcCChhHHhhccC
Q 003317 232 GLCDNSW----RSKSLED-KAVDIFRVLSKKKFVLLLDDMWKRVDLTQ---LGVPLPSPTTASKVVFTTRFVEVCGAMKA 303 (831)
Q Consensus 232 ~~~~~~~----~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 303 (831)
+.+.+.. ..-+-.+ ..-.|...+-.++-+||||.--|.-+.+. +...+.. -.|+ ||+.|-++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHhhc-
Confidence 5543321 1112222 22344455667899999998766433222 2222222 2355 888888887766554
Q ss_pred CceEEcC
Q 003317 304 HEYFKVE 310 (831)
Q Consensus 304 ~~~~~l~ 310 (831)
..++.+.
T Consensus 504 ~~i~~~~ 510 (530)
T COG0488 504 TRIWLVE 510 (530)
T ss_pred ceEEEEc
Confidence 3444444
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.95 E-value=0.022 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.95 E-value=0.074 Score=51.05 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356799999999999999999998764
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.94 E-value=0.034 Score=52.85 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD--LKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
.-.+++|+|..|.|||||.+.++.... .....+++.-..- .+..+..+ ..++.-. +-..-+...-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~---qLS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSFASPRDARR---AGIAMVY---QLSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCcCCHHHHHh---cCeEEEE---ecCHHHHHHHHH
Confidence 557999999999999999999987642 3344455432111 11111111 1111100 112222333344
Q ss_pred HHHHcCCcEEEEEcCCCCccc---ccccccCCCC-CCCCcEEEEEcCChhHH
Q 003317 251 FRVLSKKKFVLLLDDMWKRVD---LTQLGVPLPS-PTTASKVVFTTRFVEVC 298 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTtR~~~v~ 298 (831)
...+-.++-++++|+.-..-+ ...+...+.. ...|..||++|.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 555666778888998754322 2222222211 12366688888876543
No 353
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.94 E-value=0.065 Score=57.72 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCcccchHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC---EEEEEEeC
Q 003317 153 EPTVGLESTLDKVWSCLGEE--------------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD---VVIWVVVS 215 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~---~~~wv~~s 215 (831)
..++|.++.+..+.-.+... ..+.|.++|++|+|||++|+.+..... ..|- ..-+...+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~----~~fi~vdat~~~e~g 87 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEATKFTEVG 87 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEeecceeecCC
Confidence 45788888888876555421 247899999999999999999998864 3442 22222222
Q ss_pred C-CCCHHHHHHHHHHHh
Q 003317 216 K-DLKIERIQDDIWKKI 231 (831)
Q Consensus 216 ~-~~~~~~~~~~i~~~l 231 (831)
. ..+.+.+++.+....
T Consensus 88 ~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 88 YVGRDVESMVRDLTDAA 104 (441)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 2 235666666665543
No 354
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.93 E-value=0.1 Score=55.30 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998874
No 355
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.011 Score=58.56 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=53.6
Q ss_pred CCCCCcccccccCcCccc-hhhhcCCcccEEeccCC--CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhh
Q 003317 534 PICPDLQTLFLKGINELP-RELKALVNLKYLNLDHT--TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDEL 610 (831)
Q Consensus 534 ~~~~~Lr~L~L~~~~~lp-~~i~~L~~Lr~L~L~~~--~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L 610 (831)
..+.+|+.|++.++.-.+ ..+-.|++|++|++|.| .....++.- ..++++|++|++++|++.. ...+..+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~------lstl~pl 112 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD------LSTLRPL 112 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc------ccccchh
Confidence 455666666665522111 12336789999999988 434455542 4567999999999998875 2345566
Q ss_pred cCCcCCCceeEeecc
Q 003317 611 VQLDHLNELSMSLHS 625 (831)
Q Consensus 611 ~~L~~L~~L~i~~~~ 625 (831)
+.|++|..|++..+.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 666666666665444
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.069 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.-.+++|+|+.|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 567999999999999999999988753
No 357
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.89 E-value=0.7 Score=48.86 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=35.1
Q ss_pred eEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 306 YFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 306 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
++++++++.+|+..++.-.....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755432222344556677777779988543
No 358
>PRK03839 putative kinase; Provisional
Probab=94.88 E-value=0.023 Score=55.13 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 359
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.23 Score=56.66 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..+.+-++|++|.|||.||+++++... .+|-.+.+- + ++.. +-..........+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~----~~fi~v~~~---------~----l~sk-------~vGesek~ir~~F~~ 330 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR----SRFISVKGS---------E----LLSK-------WVGESEKNIRELFEK 330 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC----CeEEEeeCH---------H----Hhcc-------ccchHHHHHHHHHHH
Confidence 456899999999999999999999754 445333221 1 1110 012223333344444
Q ss_pred HHcCCcEEEEEcCCCCccccc-------------ccccCCCC--CCCCcEEEEEcCChhHHh-h----ccCCceEEcCCC
Q 003317 253 VLSKKKFVLLLDDMWKRVDLT-------------QLGVPLPS--PTTASKVVFTTRFVEVCG-A----MKAHEYFKVECL 312 (831)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~~-------------~l~~~l~~--~~~gs~ilvTtR~~~v~~-~----~~~~~~~~l~~L 312 (831)
..+..+..|.+|++.....+. .+...+.. ...+..||-||-...... . ..-...+.+..-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 446789999999986432111 11111211 122333444444333221 1 122457889999
Q ss_pred ChHHHHHHHHHHhhhc
Q 003317 313 AHEKAWILFQEHVERQ 328 (831)
Q Consensus 313 ~~~e~~~Lf~~~~~~~ 328 (831)
+.++..+.|+.+....
T Consensus 411 d~~~r~~i~~~~~~~~ 426 (494)
T COG0464 411 DLEERLEIFKIHLRDK 426 (494)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999999999988643
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.87 E-value=0.059 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|..|.|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 55799999999999999999998764
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.84 E-value=0.21 Score=51.40 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
.-+++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a----~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA----SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----hCCCcEEEEEecC
Confidence 568999999999999999999876643 2234677887754
No 362
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.83 E-value=0.088 Score=50.71 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|.+|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999874
No 363
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.82 E-value=0.088 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.|.|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 364
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.82 E-value=0.063 Score=54.26 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHhcC-------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLESTLDKVWSCLGE-------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|..-.++.|+..+.+ ...-+++.+|.+|+||.-.++.+++...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 356777777777776643 3567999999999999999999998864
No 365
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.81 E-value=0.046 Score=60.12 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 45799999999998887643 4678999999999999999998764
No 366
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0033 Score=62.21 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCCcccccccCcCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCc
Q 003317 536 CPDLQTLFLKGINELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLD 614 (831)
Q Consensus 536 ~~~Lr~L~L~~~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 614 (831)
+.+.+.|++.+..--- ..+.+++.|++|.||-| .|+.+.+ +..+++|++|.|+.|.|..+ ..+.-|++|+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~sl------dEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIESL------DELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccccH------HHHHHHhcCc
Confidence 4455666666522211 22346777777777777 5777665 67777777777777776653 3344555666
Q ss_pred CCCceeEe
Q 003317 615 HLNELSMS 622 (831)
Q Consensus 615 ~L~~L~i~ 622 (831)
+|+.|-+.
T Consensus 89 sLr~LWL~ 96 (388)
T KOG2123|consen 89 SLRTLWLD 96 (388)
T ss_pred hhhhHhhc
Confidence 66655544
No 367
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.79 E-value=0.055 Score=58.94 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN----SWRSKSLEDK- 246 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~- 246 (831)
.-..++|+|..|+|||||++.+++... .+.++.+-+++.. .+.++..+++..-+.... ...+.+....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~------~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT------ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC------CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 457899999999999999999986532 2566666676654 344555555443222110 0012222111
Q ss_pred -----HHHHHHHH--cCCcEEEEEcCCCC
Q 003317 247 -----AVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 247 -----~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
+-.+.+++ +++.+|+++||+-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 12233444 58999999999843
No 368
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.78 E-value=0.1 Score=50.77 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
++.|.|++|+|||++|.++..... ..=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~----~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL----ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH----HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877753 2224577876644 34444443
No 369
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.77 E-value=0.046 Score=58.16 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 151 PIEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
|...+||.+..+..++-.+.+....-|.|.|..|+||||+++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 346679999999888777777666778899999999999999998765
No 370
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.77 E-value=0.05 Score=49.09 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=29.2
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 161 TLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.+++-+.|.. ....+|.+.|.-|+||||+++.+++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444432 3456999999999999999999999864
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.76 E-value=0.12 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=27.5
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 168 CLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 168 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++...+..+|.|+|.+|+|||||+..+.+...
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445799999999999999999999999864
No 372
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.72 E-value=1.5 Score=46.15 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHH
Q 003317 155 TVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (831)
++=..+....++..+.. .+.|.|.|++|+||||+|+.++.... ..| +.|.++...+..++.
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~----~~~---~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLN----WPC---VRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHC----CCe---EEEEecCCCChhhcC
Confidence 33344455566666643 34699999999999999999999864 222 355555555544443
No 373
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.14 Score=56.60 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
.+++.++|++|+||||++..++.... ....-..+..|+..... ...+.++...+.++.+.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~--~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA--LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH
Confidence 46999999999999999988877652 12233456666543321 122334444555554432 22333444444443
Q ss_pred HHcCCcEEEEEcCC
Q 003317 253 VLSKKKFVLLLDDM 266 (831)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (831)
+. ..=+||+|..
T Consensus 297 -~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 -LR-DCDVILIDTA 308 (424)
T ss_pred -hC-CCCEEEEeCC
Confidence 22 3457888866
No 374
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.71 E-value=0.97 Score=54.15 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=89.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhc------------cCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDS------------RKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWR 239 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 239 (831)
...+++.|.|+.+.||||+.+.+.-..--. .-..|+. ++..++...++..-+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~l--------------- 388 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSL--------------- 388 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhch---------------
Confidence 356789999999999999999886442100 0112222 233333332222111
Q ss_pred CCCHHHHHHHHHHHHc--CCcEEEEEcCCCCccc---cccc----ccCCCCCCCCcEEEEEcCChhHHhhccCCceEEcC
Q 003317 240 SKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRVD---LTQL----GVPLPSPTTASKVVFTTRFVEVCGAMKAHEYFKVE 310 (831)
Q Consensus 240 ~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~ 310 (831)
.+.......+...+. +.+-|+++|....-.+ -..+ ...+. ..|+.+|+||...++.........+.-.
T Consensus 389 -StfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 389 -STFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred -hHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 111111122222222 4778999999864322 1112 22222 2478999999998876544322211110
Q ss_pred CCCh-HHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhc
Q 003317 311 CLAH-EKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRR 379 (831)
Q Consensus 311 ~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~ 379 (831)
.+.. ++... |...+. .... -...|-.|++++ |+|-.|.--|.-+.. ........+++.+..
T Consensus 466 ~~~~d~~~l~-~~Ykl~-~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 466 SVEFDEETLR-PTYRLL-IGIP----GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EEEEecCcCc-EEEEEe-eCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 1100 11000 000000 0100 123477787777 788888777777655 344456666655543
No 375
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.027 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 376
>PRK15453 phosphoribulokinase; Provisional
Probab=94.62 E-value=0.27 Score=50.28 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=46.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC--CCCHHHHHHHHH--HHhCCCCCC--CCCCCHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK--DLKIERIQDDIW--KKIGLCDNS--WRSKSLED 245 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~ 245 (831)
....+|+|.|.+|+||||+|+.+.+.+. ..=...+.++... .++....-..+. +.-+.+-+. .+..+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~----~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dl 78 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR----RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDE 78 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh----hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHH
Confidence 3568999999999999999999987664 1111233333222 123333322221 122222111 35667777
Q ss_pred HHHHHHHHHcC
Q 003317 246 KAVDIFRVLSK 256 (831)
Q Consensus 246 ~~~~l~~~l~~ 256 (831)
+.+.++....+
T Consensus 79 L~~~l~~l~~~ 89 (290)
T PRK15453 79 LEQLFREYGET 89 (290)
T ss_pred HHHHHHHHhcC
Confidence 88888776654
No 377
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.61 E-value=0.079 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998864
No 378
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.023 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.+.|.+|+||||+|+++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999999876
No 379
>PRK05973 replicative DNA helicase; Provisional
Probab=94.61 E-value=0.31 Score=48.98 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
...++.|.|.+|+|||++|.++..... +. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 567999999999999999999877653 12 345666655544 45555554
No 380
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.60 E-value=0.082 Score=61.24 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG 232 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (831)
+.++|.++.++.+...+.... .+.++|++|+||||+|+.+.+... ...|...+++.-+.. +...+++.++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~---~~~~~~~~~~~n~~~-~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP---DEELEDILVYPNPED-PNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC---chhheeEEEEeCCCC-CchHHHHHHHHhhc
Confidence 567899988888777776543 556999999999999999998864 234444444433332 45566777776665
Q ss_pred C
Q 003317 233 L 233 (831)
Q Consensus 233 ~ 233 (831)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 381
>PRK04040 adenylate kinase; Provisional
Probab=94.58 E-value=0.032 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 382
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.58 E-value=0.23 Score=46.94 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEE---EEEeCCCCCHHHHHHHHHHHhCCC--CC--CCCCCC----
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVI---WVVVSKDLKIERIQDDIWKKIGLC--DN--SWRSKS---- 242 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~---wv~~s~~~~~~~~~~~i~~~l~~~--~~--~~~~~~---- 242 (831)
...|-|++..|.||||.|..+.-+.. ...+ .++ |+...........+..+ .+... .. .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~ 78 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREAD 78 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHH
Confidence 46888999999999999998887764 2233 333 33333233333444332 11100 00 011111
Q ss_pred ---HHHHHHHHHHHHcCCcE-EEEEcCCCCc-----ccccccccCCCCCCCCcEEEEEcCCh
Q 003317 243 ---LEDKAVDIFRVLSKKKF-VLLLDDMWKR-----VDLTQLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 243 ---~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
..+.....++.+...+| |||||.+-.. -..+++...+.....+.-||+|-|+.
T Consensus 79 ~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 79 TAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11223344455555555 9999998532 22333433344444567899999975
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.56 E-value=0.12 Score=57.61 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW---RSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 249 (831)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++.. -++.++...... ...+.+++...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a----~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~ 151 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA----AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILAT 151 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHH
Confidence 467999999999999999999988764 22346788775443 333322 245555422110 12233333333
Q ss_pred HHHHHcCCcEEEEEcCCC
Q 003317 250 IFRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~~k~~LlVlDdv~ 267 (831)
+. +.+.-++|+|.+.
T Consensus 152 i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 152 IE---EEKPDLVVIDSIQ 166 (446)
T ss_pred HH---hhCCCEEEEechh
Confidence 32 2355578888874
No 384
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.54 E-value=0.098 Score=57.31 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD----NSWRSKSLED--- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~--- 245 (831)
.-..++|+|.+|+|||||++.+..... ....+++...-+..++.++....+....... ...+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 456899999999999999998876532 2334555543344455555544443321100 0001111111
Q ss_pred --HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 --KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 --~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
.+-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 112233333 48999999999843
No 385
>PRK00625 shikimate kinase; Provisional
Probab=94.53 E-value=0.03 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988753
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.53 E-value=0.027 Score=58.19 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHH
Q 003317 163 DKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (831)
..+++.+...+ +-+.++|+.|+|||++++...+... ...| .+.-++.+...+...++
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~---~~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD---SDKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST---TCCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC---cccc-ceeEeeccCCCCHHHHH
Confidence 44555555544 4558999999999999999887653 1222 34455666655544443
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.51 E-value=0.033 Score=55.92 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|+|++|+||||+|+.+++.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998864
No 388
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.074 Score=51.12 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55799999999999999999998764
No 389
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.062 Score=48.33 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
..+-|.|.|-+|+||||++..++.... .-|+++|+-..-..+....=+... ...-+.+.+.+.|..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~---------~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~ 71 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG---------LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEP 71 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC---------CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHH
Confidence 356789999999999999999996643 346666554322222222111111 123455666666666
Q ss_pred HHcCC
Q 003317 253 VLSKK 257 (831)
Q Consensus 253 ~l~~k 257 (831)
.+.+.
T Consensus 72 ~m~~G 76 (176)
T KOG3347|consen 72 LMIEG 76 (176)
T ss_pred HHhcC
Confidence 66543
No 390
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.46 E-value=0.039 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998875
No 391
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.46 E-value=0.23 Score=50.05 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG 232 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (831)
...++.|.|.+|+||||+|.+++.... +.. ..+++++. ..+..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g-~~~~yi~~--e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNG-YSVSYVST--QLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCC-CcEEEEeC--CCCHHHHHHHH-HHhC
Confidence 456999999999999999877665542 122 34566663 33456666665 3444
No 392
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.27 Score=53.79 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
...+|+++|+.|+||||++..+..... .....+.+..+.... .....+-+..+.+.++.+.. ...+..+....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~--~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al- 264 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV--IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML- 264 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-
Confidence 357999999999999999998877642 112223344443322 22333445556666665432 122333333222
Q ss_pred HHHcCCcEEEEEcCC
Q 003317 252 RVLSKKKFVLLLDDM 266 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv 266 (831)
..++++. ++++|-.
T Consensus 265 ~~l~~~d-~VLIDTa 278 (420)
T PRK14721 265 HELRGKH-MVLIDTV 278 (420)
T ss_pred HHhcCCC-EEEecCC
Confidence 2344443 4556654
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.42 E-value=0.027 Score=55.52 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 394
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.41 E-value=0.044 Score=58.30 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=41.9
Q ss_pred CCCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 151 PIEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.+.+||-++.+..+...+.+....-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3356799999999998888887778888999999999999999987754
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.39 E-value=0.17 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|+|++|+||||+|+.++..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987753
No 396
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.19 Score=50.67 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCcccchHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG----------E--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+++.|-+..++.+.+... . ...+-|.++|++|.||+.||++|+.... .. |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----ST-----FFSvSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----ST-----FFSVSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC----Cc-----eEEeehH---
Confidence 455788888888877652 1 1468899999999999999999998763 22 3344443
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWK 268 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 268 (831)
++.. ..+| ..+.++..|.+.- .+|+.+|.+|.|+.
T Consensus 201 -DLvS---KWmG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 -DLVS---KWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -HHHH---HHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1111 1111 2244555555544 46889999999863
No 397
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.38 E-value=0.044 Score=48.60 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=22.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
|-|+|.+|+||||+|+.++.... ..|.. |....+....++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~----~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG----LSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT------EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcC----CceeE---EEecCCCCcccc
Confidence 67899999999999999999864 66643 334444444444
No 398
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.37 E-value=0.079 Score=51.72 Aligned_cols=42 Identities=33% Similarity=0.526 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.|+|+|-||+||||+|..+..... .++.| .+.=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCc-eEEEEeCCCCCCh
Confidence 689999999999999999666664 22323 3455665556554
No 399
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.36 E-value=0.22 Score=55.07 Aligned_cols=93 Identities=19% Similarity=0.291 Sum_probs=58.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHH-
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN----SWRSKSLED- 245 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~- 245 (831)
..-.-++|+|.+|+|||||+.++.+... +.+-+.++++-++... .+.++..++...-..... ...+.+...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~---~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS---KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH---hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 3557889999999999999999988864 2356788888777654 445666666543221110 001222221
Q ss_pred -----HHHHHHHHH---cCCcEEEEEcCCC
Q 003317 246 -----KAVDIFRVL---SKKKFVLLLDDMW 267 (831)
Q Consensus 246 -----~~~~l~~~l---~~k~~LlVlDdv~ 267 (831)
.+-.+.+++ .++.+|+++||+-
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 122344555 3799999999984
No 400
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.36 E-value=0.035 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 401
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.35 E-value=0.13 Score=56.48 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCcccchHHHHHHHHHhcC-------C---------CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE-------E---------NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..++.+...+.. . ..+.|.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3468999888877554411 0 236789999999999999999987653
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.32 E-value=0.039 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....|.|+|++|+||||+|+.++....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998863
No 403
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.31 E-value=0.031 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 404
>PRK05439 pantothenate kinase; Provisional
Probab=94.31 E-value=0.35 Score=50.62 Aligned_cols=81 Identities=22% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH--HHHHhCCCCCCCCCCCHHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD--IWKKIGLCDNSWRSKSLEDKAVD 249 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~ 249 (831)
...-+|+|.|.+|+||||+|+.+..... ....-..+.-++...-+...+.+.. ++..-+. ...-+.+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~--~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~----Pes~D~~~l~~~ 157 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS--RWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF----PESYDMRALLRF 157 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--hhCCCCceEEEeccccccCHHHHhhhhccccCCC----cccccHHHHHHH
Confidence 3567999999999999999999887653 1111123333443333322222221 1111111 134456666666
Q ss_pred HHHHHcCCc
Q 003317 250 IFRVLSKKK 258 (831)
Q Consensus 250 l~~~l~~k~ 258 (831)
|.....++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 666666654
No 405
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.31 E-value=0.059 Score=52.32 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
.++|.|+|+.|+|||||++.+..... ..|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~----~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP----DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST----TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc----cccccceeec
Confidence 47899999999999999999999865 6776555554
No 406
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=1.9 Score=42.75 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=91.8
Q ss_pred ccccCCCCCc---ccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEE
Q 003317 146 AVEERPIEPT---VGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVV 209 (831)
Q Consensus 146 ~~~~~~~~~~---vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~ 209 (831)
.++++|++.+ -|-+..++++++.+.= ...+-|..+|++|.|||-+|++.+.... ..|-
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~----aTFL-- 234 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN----ATFL-- 234 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc----chHH--
Confidence 4566666443 5788888998887631 2567889999999999999998877643 3331
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCc----cc------------c
Q 003317 210 IWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKR----VD------------L 272 (831)
Q Consensus 210 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----~~------------~ 272 (831)
++..--+-|..+. +-..++..-...-+ ..+..|.+|.+... .+ .
T Consensus 235 ------------KLAgPQLVQMfIG-------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTM 295 (424)
T KOG0652|consen 235 ------------KLAGPQLVQMFIG-------DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTM 295 (424)
T ss_pred ------------HhcchHHHhhhhc-------chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHH
Confidence 1111111111111 11222222222223 46788888987531 00 0
Q ss_pred cccccCCCCC--CCCcEEEEEcCChhHH-----hhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHH
Q 003317 273 TQLGVPLPSP--TTASKVVFTTRFVEVC-----GAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAET 342 (831)
Q Consensus 273 ~~l~~~l~~~--~~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~ 342 (831)
.++..-+..+ ...-+||..|..-++. ++-.-...++.+.-+++.--.++.-+........+-+++++++.
T Consensus 296 LELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 296 LELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred HHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 1111112222 2345677666544442 22222345666555555545566666666665666677777654
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.26 E-value=0.21 Score=55.60 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLC 234 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 234 (831)
..|++++|+.|+||||++..++..+. .+..-..+..+.... .....+-++...+..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV--MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH--HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999999998764 222222445554322 123344455556666554
No 408
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.26 E-value=0.15 Score=49.89 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC--------CEEEEEEeCCC
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF--------DVVIWVVVSKD 217 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F--------~~~~wv~~s~~ 217 (831)
-.++.|+|++|+||||++..+..... ....| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~--~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA--TGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH--T---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--hCCccCCcccccCceEEEEeccCC
Confidence 45899999999999999999988875 22222 36778776665
No 409
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.26 E-value=0.23 Score=50.64 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN-----SWRSKSLEDK 246 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 246 (831)
.-.-++|.|..|+|||+|+..+.+...-..+++-+.++++-+++.. ...++..++...=..... ..++....+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999998877520012335778888888764 456666666553221110 0111111111
Q ss_pred -----HHHHHHHH---cCCcEEEEEcCCCC
Q 003317 247 -----AVDIFRVL---SKKKFVLLLDDMWK 268 (831)
Q Consensus 247 -----~~~l~~~l---~~k~~LlVlDdv~~ 268 (831)
+-.+.+++ +++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 22344554 26899999999854
No 410
>PRK05922 type III secretion system ATPase; Validated
Probab=94.25 E-value=0.096 Score=57.24 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCDN-----SWRSKSLED- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 245 (831)
.-..++|+|..|+|||||.+.+.+... .+....+-++.. ..+.+.+.+.......... ..+......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~------~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK------STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC------CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 556789999999999999999987642 233333333332 3344555444433322111 001111111
Q ss_pred ----HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 ----KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ----~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
.+-.+.+++ +++++|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122334444 47999999999843
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.23 Score=58.10 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK--IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
..+|+++|+.|+||||.+..++..+. .......+..++.. .+. ..+-++...+.++.+.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~--~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV--AREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH--HHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH
Confidence 47999999999999999999887763 11222345555432 333 45666777777776543 2234555544444
Q ss_pred HHHcCCcEEEEEcCCC
Q 003317 252 RVLSKKKFVLLLDDMW 267 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (831)
.++++. +|++|-.-
T Consensus 260 -~~~~~D-~VLIDTAG 273 (767)
T PRK14723 260 -ALGDKH-LVLIDTVG 273 (767)
T ss_pred -HhcCCC-EEEEeCCC
Confidence 344444 67777664
No 412
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.23 E-value=0.23 Score=50.27 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHh--CCCCCC--CCCCCHHHHHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD--LKIERIQDDIWKKI--GLCDNS--WRSKSLEDKAVD 249 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~ 249 (831)
+|+|.|.+|+||||+++.+.+.+. ..+ ..++.++...- ++-...-..+.... +.+-+. ....+.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~ 76 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEEL 76 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHH
Confidence 589999999999999999998775 111 12333332221 22222222222221 111111 356677788888
Q ss_pred HHHHHcCCc
Q 003317 250 IFRVLSKKK 258 (831)
Q Consensus 250 l~~~l~~k~ 258 (831)
++.+.+++.
T Consensus 77 l~~L~~g~~ 85 (277)
T cd02029 77 FRTYGETGR 85 (277)
T ss_pred HHHHHcCCC
Confidence 887776543
No 413
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.22 E-value=0.27 Score=54.14 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN-----SWRSKSLED- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 245 (831)
.-.-++|.|.+|+|||||+.++..... . .+=+.++++-++... .+.++..++...-..... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--K-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 557889999999999999999877754 1 222467777777654 455666666653222110 011212221
Q ss_pred ----HHHHHHHHH---cCCcEEEEEcCCC
Q 003317 246 ----KAVDIFRVL---SKKKFVLLLDDMW 267 (831)
Q Consensus 246 ----~~~~l~~~l---~~k~~LlVlDdv~ 267 (831)
.+-.+.+++ +++.+||++||+-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 122344555 5799999999984
No 414
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.21 E-value=0.29 Score=51.79 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+++++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999998875
No 415
>PRK08149 ATP synthase SpaL; Validated
Probab=94.20 E-value=0.18 Score=55.15 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHH--
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCD-----NSWRSKSLE-- 244 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 244 (831)
.-..++|+|.+|+|||||+..+++... -+.++...+... .++.++..+......... ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~------~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE------ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC------CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 567899999999999999999887542 233333444443 355666666665433211 011111111
Q ss_pred ---HHHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 245 ---DKAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 245 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
..+-.+.+++ ++|++||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222333444 58999999999843
No 416
>PRK06217 hypothetical protein; Validated
Probab=94.18 E-value=0.038 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|.|.+|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998864
No 417
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.13 E-value=0.057 Score=57.34 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=38.5
Q ss_pred CCCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 151 PIEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 151 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+...++|.+..+..+.-.+.+.+..-+.+.|..|+||||+|+.+.+-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 335679999999887765554455668999999999999999998765
No 418
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.09 E-value=0.21 Score=50.44 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------CCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDN-------------SWR 239 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------~~~ 239 (831)
.-+++.|.|.+|+|||+++.++..... +..=..++|++.... ..++.+.+- +++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 568999999999999999998765542 111345778776554 344444433 4432100 001
Q ss_pred -----CCCHHHHHHHHHHHHcC-CcEEEEEcCCC
Q 003317 240 -----SKSLEDKAVDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 240 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (831)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34677778888877765 55799999873
No 419
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.055 Score=62.80 Aligned_cols=156 Identities=15% Similarity=0.285 Sum_probs=88.3
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh-ccCCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLD-SRKDDF-DVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
++++||+.++.++++.|....-.--.++|.+|+|||++|.-++.+.-. .|.... +..++. .|+..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~L------- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSL------- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHH-------
Confidence 678999999999999997754444567999999999999988887630 011111 111111 011111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCccc--------c--cccccCCCCCCCC-cEEEEEcCChhHH
Q 003317 231 IGLCDNSWRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKRVD--------L--TQLGVPLPSPTTA-SKVVFTTRFVEVC 298 (831)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~--------~--~~l~~~l~~~~~g-s~ilvTtR~~~v~ 298 (831)
..+.. -..+.+++...+.+.++ .++..|++|.+..... . ..+.. |.-..| -++|-.|...+.-
T Consensus 238 vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLK--PaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 238 VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLK--PALARGELRCIGATTLDEYR 312 (786)
T ss_pred hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhH--HHHhcCCeEEEEeccHHHHH
Confidence 11111 23355666666555554 4589999999865311 1 11111 111223 3444444333221
Q ss_pred -------hhccCCceEEcCCCChHHHHHHHHHHh
Q 003317 299 -------GAMKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 299 -------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
......+.+.++.-+.+++..+++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111234678888999999888876544
No 420
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.056 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..-.+++|+|.+|+|||||++.+..-.+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 3567999999999999999999987643
No 421
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.065 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999998873
No 422
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.06 E-value=0.15 Score=52.51 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=59.2
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 003317 156 VGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD 235 (831)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 235 (831)
.|...+..+.+..+......+|.|.|..|+||||++..+.+... ..-..++.+.-...+.... ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~----~~~~~iitiEdp~E~~~~~-----~~q~~v~- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN----TPEKNIITVEDPVEYQIPG-----INQVQVN- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC----CCCCeEEEECCCceecCCC-----ceEEEeC-
Confidence 45544444444444445567899999999999999998877653 2112333332222211110 0111111
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccccc
Q 003317 236 NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLT 273 (831)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (831)
..........++..++..+=.++++++.+.+...
T Consensus 132 ----~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ----EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ----CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234566777788888899999998876533
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.04 E-value=0.22 Score=55.54 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 163 DKVWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 163 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
..+-+.|..+ .-.++.|.|.+|+|||||+.++..... +. -..++|++...
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~-g~kvlYvs~EE 132 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KN-QMKVLYVSGEE 132 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hc-CCcEEEEECcC
Confidence 3343444433 568999999999999999999987764 12 23577876543
No 424
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.04 E-value=0.21 Score=48.03 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC---CCCHHHHHHHH--HHHhCCCCC-CCCCCCH---
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK---DLKIERIQDDI--WKKIGLCDN-SWRSKSL--- 243 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i--~~~l~~~~~-~~~~~~~--- 243 (831)
....|-|+|..|-||||.|..+.-+.. ++=..+..+..-. .......+..+ +.......+ .+...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~----g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV----GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH----HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 457899999999999999998887764 3333444444333 22333333332 000000000 0111111
Q ss_pred ----HHHHHHHHHHHcCCcE-EEEEcCCCCc-----ccccccccCCCCCCCCcEEEEEcCCh
Q 003317 244 ----EDKAVDIFRVLSKKKF-VLLLDDMWKR-----VDLTQLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 244 ----~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
.+.....++.+...+| |||||.+-.. -..+++...+.....+.-||+|=|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223344455555555 9999998532 22334444444444567899999975
No 425
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.01 E-value=0.23 Score=54.45 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK-IERIQDDIWKKIGLCD-----NSWRSKSLED- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 245 (831)
.-..++|+|..|+|||||++.+++... -+.++.+-++.... +.+...+.+..-+... ...+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~------~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC------CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 567889999999999999999987643 24455566666543 3444444443322211 0111111211
Q ss_pred ----HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 ----KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ----~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
.+-.+.+++ +++.+|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122233444 58999999999843
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.96 E-value=0.051 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999988753
No 427
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.96 E-value=0.1 Score=56.68 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 161 TLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 161 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+.+++.+.......+.|.|.||+|||++.+.+.+..+
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 445666666666778999999999999999999999875
No 428
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.95 E-value=0.043 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 429
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.93 E-value=0.15 Score=55.07 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=50.3
Q ss_pred CCcccchHHHHHHHHHhcC---------C-----CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC---CEEEEEEeC
Q 003317 153 EPTVGLESTLDKVWSCLGE---------E-----NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF---DVVIWVVVS 215 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F---~~~~wv~~s 215 (831)
..++|.+..+..+..++.. . ..+.|.++|++|+|||++|+.+..... ..| +..-|...+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~----~~fi~vD~t~f~e~G 90 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEATKFTEVG 90 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC----ChheeecchhhccCC
Confidence 4578999988888777632 0 246899999999999999999998864 333 232233222
Q ss_pred C-CCCHHHHHHHHHHHh
Q 003317 216 K-DLKIERIQDDIWKKI 231 (831)
Q Consensus 216 ~-~~~~~~~~~~i~~~l 231 (831)
. ..+.....+.+....
T Consensus 91 yvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 91 YVGRDVESIIRDLVEIA 107 (443)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 2 235666666666544
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.92 E-value=0.067 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998743
No 431
>PRK13949 shikimate kinase; Provisional
Probab=93.89 E-value=0.051 Score=51.89 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998864
No 432
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.89 E-value=0.23 Score=54.34 Aligned_cols=91 Identities=24% Similarity=0.296 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCCCHHH--
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDN-----SWRSKSLED-- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 245 (831)
.-..++|+|..|+|||||++.++.... ....++.....+...+.++..+.+..-+.... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 456899999999999999998887642 22223332223333455555555443222110 011212221
Q ss_pred ---HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 ---KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ---~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
.+-.+.+++ +++.+|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234444 57999999999843
No 433
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.88 E-value=0.34 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|..|+|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56799999999999999999998654
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.86 E-value=0.044 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
++|+|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 435
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.11 Score=48.99 Aligned_cols=116 Identities=23% Similarity=0.231 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL--KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
+-.+++|+|..|.|||||++.+..... .....+++...... ..... ...++... +-..-+...-.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l 91 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVAL 91 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHH
Confidence 457999999999999999999987653 33444544322111 11111 11111100 111122333335
Q ss_pred HHHHcCCcEEEEEcCCCCccc---ccccccCCCC-CCCCcEEEEEcCChhHHhh
Q 003317 251 FRVLSKKKFVLLLDDMWKRVD---LTQLGVPLPS-PTTASKVVFTTRFVEVCGA 300 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 300 (831)
...+...+-++++|+.-..-+ ...+...+.. ...+..++++|.+.+....
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 555556678999998754321 1222111111 1124668888887765544
No 436
>PRK14530 adenylate kinase; Provisional
Probab=93.86 E-value=0.05 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988763
No 437
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.85 E-value=0.047 Score=50.07 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998753
No 438
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.85 E-value=0.044 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 439
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.85 E-value=0.13 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5579999999999999999999876
No 440
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.84 E-value=0.078 Score=49.72 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
|++|+|+.|+||||++..+....+ ...+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~---~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK---ARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEec
Confidence 589999999999999999999875 23454444433
No 441
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.84 E-value=0.31 Score=53.80 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhhh---hccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLL-TQINNKFL---DSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDN------SWRSKS 242 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~---~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~ 242 (831)
.-.-++|.|..|+|||+|| -.+.+... ....+.-+.++++.+++..+...-+.+.+++-+.-.. ..++..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567899999999999997 55666542 0011244577888888876443334444444442111 011111
Q ss_pred HHHH-----HHHHHHHH--cCCcEEEEEcCCCC
Q 003317 243 LEDK-----AVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 243 ~~~~-----~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
..+. .-.+.+++ +++..|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 12233333 47999999999854
No 442
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.82 E-value=0.15 Score=52.73 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
.-+++.|+|.+|+|||+++.++..... .....++||+.... ..++.+.+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~----~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA----REGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH----hcCCcEEEEEecCC--HHHHHHHHH
Confidence 678999999999999999999988865 45888999987775 344443333
No 443
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.82 E-value=0.018 Score=33.83 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=16.6
Q ss_pred cccEEeccCCCCCCCCChhhhcCC
Q 003317 559 NLKYLNLDHTTFLHPIPSPLISSF 582 (831)
Q Consensus 559 ~Lr~L~L~~~~~l~~lp~~~i~~L 582 (831)
+|++|||++| .++.+|.+ +++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5889999999 78888876 6543
No 444
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.79 E-value=0.15 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 445
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.76 E-value=0.12 Score=53.42 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCcccchHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC
Q 003317 153 EPTVGLESTLDK---VWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD 207 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~ 207 (831)
+.+||..+..+. |++++.++ .-+.|.|+|++|.|||+||-.+.+... ..-+|-
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG--~dvPF~ 96 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG--EDVPFV 96 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC--CCCCce
Confidence 568998766554 66777665 568999999999999999999999986 345563
No 446
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.76 E-value=0.091 Score=53.29 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=48.0
Q ss_pred HHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 163 DKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 163 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
.+++..+.. ++..+|+|.|.+|+|||||.-.+...+. .+++--.++=|.-|..++-..++.+=++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~--~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR--ERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH--HCCcEEEEEEECCCCCCCCccccccHhh
Confidence 445555543 5778999999999999999999999886 4555556777777777776666654443
No 447
>PRK13947 shikimate kinase; Provisional
Probab=93.74 E-value=0.052 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 448
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.74 E-value=0.28 Score=50.08 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhhhhccCCCCCEE-EEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHH
Q 003317 173 NVGIIGLYGMGGVGKTTLL-TQINNKFLDSRKDDFDVV-IWVVVSKDL-KIERIQDDIWKKIGLCD-----NSWRSKSLE 244 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 244 (831)
.-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+++.. .+.++.+++...-.... ...++....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 4567899999999999996 5555442 22333 666666653 45566666654321111 011111111
Q ss_pred H-----HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 245 D-----KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 245 ~-----~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
. .+-.+.+++ +++.+|||+||+-.
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 1 112222333 57999999999854
No 449
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.33 Score=47.99 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 156 VGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 156 vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
=|-.+.++++.+... . +..+-|..+|++|.|||-+|++|+|+..
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 356666776665432 1 3678889999999999999999999854
No 450
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.72 E-value=0.17 Score=55.60 Aligned_cols=93 Identities=23% Similarity=0.362 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCD-----NSWRSKSLED- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 245 (831)
.-.-++|.|.+|+|||+|+.++.+... +.+-+.++++-++... .+.++.+++...-.... ...+......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~---~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV---GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH---hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 456889999999999999999888753 2334788888887765 34556666554321111 0111112121
Q ss_pred ----HHHHHHHHHc---CCcEEEEEcCCCC
Q 003317 246 ----KAVDIFRVLS---KKKFVLLLDDMWK 268 (831)
Q Consensus 246 ----~~~~l~~~l~---~k~~LlVlDdv~~ 268 (831)
.+-.+.++++ ++++|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1233445553 6899999999843
No 451
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.71 E-value=0.17 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..|+|.|..|+||||+++.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999875
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.68 E-value=0.06 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQIN 195 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (831)
.-..++|+|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999876
No 453
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.31 Score=47.78 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 156 VGLESTLDKVWSCLG-------------EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 156 vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
-|.+-.+++|.+... -+..+-|.++|++|+|||-||++|+|+..
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 356666666655441 14678899999999999999999999854
No 454
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.66 E-value=0.11 Score=52.04 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHH
Q 003317 161 TLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQD 225 (831)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 225 (831)
...++++.+.. ++..+|+|.|++|+|||||.-.+...++ .+++--.++=|.-|..++-..++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~--~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR--ERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH--HTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh--hcCCceEEEEECCCCCCCCCcccc
Confidence 34455555543 4678999999999999999999999987 334444556666566665555544
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.61 E-value=0.06 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998875
No 456
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.61 E-value=0.073 Score=52.84 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=27.3
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 168 CLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 168 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+...++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34446899999999999999999999988753
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.57 E-value=0.43 Score=54.08 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---
Q 003317 163 DKVWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS--- 237 (831)
Q Consensus 163 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 237 (831)
..+-+.|..+ .-+++.|.|++|+|||||+.++..... ..-..+++++.-. +..++.+.+ +.++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~----~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC----ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence 3344445443 578999999999999999999988764 2334566665444 445555553 455532110
Q ss_pred ----------CCCCCHHHHHHHHHHHHcC-CcEEEEEcCCC
Q 003317 238 ----------WRSKSLEDKAVDIFRVLSK-KKFVLLLDDMW 267 (831)
Q Consensus 238 ----------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (831)
......++....+.+.+.. +.-.+|+|.+.
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0122335666666666654 44577888763
No 458
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.54 E-value=0.49 Score=49.94 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCD-----NSWRSKSLED- 245 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 245 (831)
....++|+|..|+|||||.+.+.+... . +..+..-++. ..++.++.......-+... ...+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT-----A-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-----C-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 456889999999999999998887643 1 2333344443 3455666555554432211 0111111111
Q ss_pred ----HHHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 ----KAVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ----~~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
.+-.+.+++ ++|.+|+++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 112223333 58999999999843
No 459
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.54 E-value=0.063 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998764
No 460
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.54 E-value=0.12 Score=57.54 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=52.3
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEE-EEeCCCCCHHHHHHHHHHHhCCCC--CCCCC
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIW-VVVSKDLKIERIQDDIWKKIGLCD--NSWRS 240 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~--~~~~~ 240 (831)
+++.+.. +.-.-..|+|++|+|||||++.+++... ..+-++.++ +-|.+...- + .+|-+.+.... ..++.
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~---~n~~~~~~ivvLIgERpeE--V-tdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT---TNNPECHLMVVLVDERPEE--V-TDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh---hcCCCeEEEEEEEeCchhh--H-HHHHHhccceEEEECCCC
Confidence 4444433 3456788999999999999999999763 233344433 334444321 1 23333331100 00111
Q ss_pred CCH-----HHHHHHHHHHH--cCCcEEEEEcCCC
Q 003317 241 KSL-----EDKAVDIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 241 ~~~-----~~~~~~l~~~l--~~k~~LlVlDdv~ 267 (831)
... ...+-.+.+++ .++.+||++|++-
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111 11222233344 5799999999984
No 461
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.54 E-value=0.061 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988753
No 462
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.52 E-value=0.12 Score=54.18 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=41.8
Q ss_pred CCcccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.++.++++++.+.. ..-+++.++|+.|.||||||..+.+-.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999998854 3678999999999999999999988875
No 463
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.3 Score=47.75 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccccccc------ccCCCCCCCCcEEEEEcCChhHHhhccCCceE
Q 003317 244 EDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQL------GVPLPSPTTASKVVFTTRFVEVCGAMKAHEYF 307 (831)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l------~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~ 307 (831)
+.....+.+.+--++=+.|||..++--+.+.+ ...+. ..|+-+|+.|-.+.++........|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444555666667889999998764333322 11222 2366678888888888766544443
No 464
>PRK14527 adenylate kinase; Provisional
Probab=93.50 E-value=0.073 Score=52.09 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.|+|++|+||||+|+.+++.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988764
No 465
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.49 E-value=0.14 Score=53.87 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
.+++.+.|.||+||||+|.+..-... .....++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA----~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA----ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH----HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998766654 22255777777666666665544
No 466
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.027 Score=56.02 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=17.7
Q ss_pred ccccceeEEEeccccccccCCCCCCCCccccccc
Q 003317 512 ERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLK 545 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~ 545 (831)
.++..+..|+|+-|.|.++.+...|.+|+.|.|.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR 71 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHH
Confidence 3444555555555555555544555555555544
No 467
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.47 E-value=0.084 Score=52.07 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW-RSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (831)
..+++.|.|+.|.||||+.+.++.-.--..-+.| |.. ....-.+...|...++...... .......-..++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa--~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPA--EYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cch--hhcCccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 4589999999999999999988654310001111 111 0001122233333333221100 0011111111222
Q ss_pred HHH--cCCcEEEEEcCCCC---ccc----ccccccCCCCCCCCcEEEEEcCChhHHhhcc
Q 003317 252 RVL--SKKKFVLLLDDMWK---RVD----LTQLGVPLPSPTTASKVVFTTRFVEVCGAMK 302 (831)
Q Consensus 252 ~~l--~~k~~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 302 (831)
..+ ..++-|+++|+... ..+ ...+...+. ..|+.+|++|-+.+++....
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 222 35788999999843 212 111222222 23788999999988876554
No 468
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.47 E-value=0.07 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45699999999999999999998753
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.44 E-value=0.059 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 470
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.43 E-value=3.2 Score=43.47 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhc------cCCCCCEEEEEEe-CCCCCHHHHHHHHHHHhCC
Q 003317 162 LDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDS------RKDDFDVVIWVVV-SKDLKIERIQDDIWKKIGL 233 (831)
Q Consensus 162 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 233 (831)
++.+.+.+..+. .++.-++|..|.||+++|..+.+..-+. ...+=+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555565544 5677799999999999999998886210 0111112233321 1222222222 33333322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEE-EcCChhHHhh-ccCCceEEc
Q 003317 234 CDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVF-TTRFVEVCGA-MKAHEYFKV 309 (831)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~-~~~~~~~~l 309 (831)
.. .-.+.+=++|+|++.... ....+...+-....++.+|+ |+....+... ......+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 001466688889886542 23334333433334555655 4444444432 344678999
Q ss_pred CCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 310 ECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 310 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.++++++..+.+... + . ..+.+..++...+|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~-~-------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-K-------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-C-C-------ChhHHHHHHHHcCCHHHHHHH
Confidence 999999988777653 1 1 123466666666662234433
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.39 E-value=0.093 Score=56.52 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
.....|.|.|+.|+||||+.+.+.+... ......++. +.+.. +-..... ..+ ..... ...........++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~----~~~~~~i~t-iEdp~--E~~~~~~-~~~-i~q~e-vg~~~~~~~~~l~ 189 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN----KNAAGHIIT-IEDPI--EYVHRNK-RSL-INQRE-VGLDTLSFANALR 189 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC----cCCCCEEEE-EcCCh--hhhccCc-cce-EEccc-cCCCCcCHHHHHH
Confidence 3457899999999999999999887653 334444443 22211 1000000 000 00000 0111223456677
Q ss_pred HHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhH
Q 003317 252 RVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEV 297 (831)
Q Consensus 252 ~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 297 (831)
..++..+=.|++|.+.+.+.+...... ...|..++.|+-..++
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 788889999999999876655432221 2335556666655443
No 472
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.38 E-value=0.095 Score=48.95 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 160 STLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 160 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++++.+.+.+ +++.++|.+|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346677777743 899999999999999999988764
No 473
>PRK14529 adenylate kinase; Provisional
Probab=93.37 E-value=0.29 Score=48.76 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=47.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhccCCCCCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFLDSRKDDFDV--VIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
|.|.|++|+||||+|+.++..+. . .+.+. .+.-.+..........++++.+- ...+.+-....+.+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--L-AHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--C-CCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHH
Confidence 78899999999999999998875 2 23321 11112333333444445554432 2233444555566666
Q ss_pred cCC-cEEEEEcCCCC
Q 003317 255 SKK-KFVLLLDDMWK 268 (831)
Q Consensus 255 ~~k-~~LlVlDdv~~ 268 (831)
.+. .--+|||..-.
T Consensus 73 ~~~~~~g~iLDGfPR 87 (223)
T PRK14529 73 KQDGKNGWLLDGFPR 87 (223)
T ss_pred hccCCCcEEEeCCCC
Confidence 432 34588998854
No 474
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.37 E-value=0.055 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (831)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.35 E-value=0.61 Score=48.53 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
...++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~---~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI---TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 456889999999999999999887753 23235688887655 345566665544
No 476
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.34 E-value=0.33 Score=53.39 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN-----SWRSKSLEDK 246 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 246 (831)
.-..++|+|..|+|||||++.+..... .+.++...++... +..++...+...-+.... ..+.......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~------~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE------ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC------CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 456899999999999999998876432 2344444444432 445555555544322110 0112222211
Q ss_pred -----HHHHHHHH--cCCcEEEEEcCCCC
Q 003317 247 -----AVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 247 -----~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
+-.+.+++ +++++|+++||+-.
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 12233444 58999999999853
No 477
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.5 Score=49.46 Aligned_cols=27 Identities=37% Similarity=0.319 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+-|-.+|++|.|||-+|++++.+..
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC
Confidence 567888999999999999999999865
No 478
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.32 E-value=0.066 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.--+|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55799999999999999999997654
No 479
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.31 E-value=0.12 Score=54.47 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (831)
+++.+.|-||+||||+|...+-... .+ -..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A--~~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA--RR--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HT--TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh--hC--CCCeeEeecCCCccHHHHh
Confidence 6899999999999999988777764 22 2345555555444444443
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=93.31 E-value=0.11 Score=41.97 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46778889999999995555544443
No 481
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.30 E-value=1 Score=47.63 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHH
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIW 228 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 228 (831)
+++.+.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~------~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS------NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC------CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4444433 345689999999999999999998864 23578888887764 3455555543
No 482
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.29 E-value=0.081 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 483
>PRK13975 thymidylate kinase; Provisional
Probab=93.25 E-value=0.077 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..|+|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999875
No 484
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.23 E-value=0.0085 Score=56.82 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCC-
Q 003317 631 RFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRD- 708 (831)
Q Consensus 631 ~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~- 708 (831)
.++........++.++-+++. +.......+.+++.|++|.+.+|.... ...+.+++ ..++|+.|+|++|+++++
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred cCCCCCCCcceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechh
Q ss_pred -CCcccccCCCceEEEecccCcccc
Q 003317 709 -LTWLALAPNVRNIGVSTCANMEEI 732 (831)
Q Consensus 709 -l~~l~~l~~L~~L~L~~c~~l~~l 732 (831)
+-++.++++|+.|.|.+.+.+...
T Consensus 168 GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHHHHHHhhhhHHHHhcCchhhhch
No 485
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.22 E-value=0.038 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
++.|.|+.|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998843
No 486
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.22 E-value=0.34 Score=46.07 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 155 TVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+||....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 36777777777776643 233556699999999999999998864
No 487
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.21 E-value=0.086 Score=51.93 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|+|+|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.17 E-value=0.044 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
..+++|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 379999999999999999999843
No 489
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.17 E-value=0.081 Score=51.35 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 490
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.12 E-value=0.11 Score=49.33 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhh
Q 003317 177 IGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|.|.|.+|+||||+++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999874
No 491
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.12 E-value=0.3 Score=53.45 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC---------EEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-----C
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD---------VVIWVVVSKDLKIERIQDDIWKKIG-LCDN-----S 237 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~-----~ 237 (831)
.-.-++|.|-+|+|||||+.++.+..........| .++++-+++.....+.+.+.+..-+ +... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 45678999999999999999998875300000022 6677778887666666666665554 2110 0
Q ss_pred CCCCCHHHH-----HHHHHHHHc---CCcEEEEEcCCC
Q 003317 238 WRSKSLEDK-----AVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 238 ~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
.+....... +-.+.++++ ++++|+++||+-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 112222221 223445554 699999999984
No 492
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.10 E-value=0.39 Score=52.66 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCD-----NSWRSKSLED 245 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 245 (831)
..-..++|+|..|+|||||++.+++.. +.+..+++.++.. ..+.+.+.+....=.... ...+....+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~------~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r 226 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP------DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER 226 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC------CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHH
Confidence 356789999999999999999888753 2344555555554 344455555432110000 0011111211
Q ss_pred H-----HHHHHHHH--cCCcEEEEEcCCCC
Q 003317 246 K-----AVDIFRVL--SKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ~-----~~~l~~~l--~~k~~LlVlDdv~~ 268 (831)
. +-.+.+++ +++++|+++||+-.
T Consensus 227 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 227 VRALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1 22233444 47899999999843
No 493
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.09 E-value=0.15 Score=53.69 Aligned_cols=47 Identities=26% Similarity=0.281 Sum_probs=35.9
Q ss_pred CCcccchHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDK---VWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+||..+..+. +++++.+. .-+.|.+.|++|.|||+||..+.+...
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 568998766654 56677665 468999999999999999999999976
No 494
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.06 E-value=0.35 Score=46.96 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|.|.|.+|+||||+|+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998764
No 495
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.05 E-value=0.58 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
.-.++.|.|.+|+|||+++.+++.+.. ..+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~---~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA---KKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 456999999999999999999877764 22234567766544 456666666543
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.03 E-value=0.081 Score=51.06 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEE
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVV 213 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~ 213 (831)
.-.|++|+|++|+|||||.+.+..-. ..=+..+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-----~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-----EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-----CCCCceEEEC
Confidence 56799999999999999999886543 2334566663
No 497
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=0.63 Score=48.84 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL--KIERIQDDIWKKIGLC 234 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~ 234 (831)
...||-+||.-|+||||....+++.++ +..|.+ +-|| .+.| ...+-++..+.+.+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~k---kkG~K~-~Lvc-aDTFRagAfDQLkqnA~k~~iP 158 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYK---KKGYKV-ALVC-ADTFRAGAFDQLKQNATKARVP 158 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHH---hcCCce-eEEe-ecccccchHHHHHHHhHhhCCe
Confidence 678999999999999987777766664 244432 2222 2322 3445555556655544
No 498
>PRK06761 hypothetical protein; Provisional
Probab=93.02 E-value=0.17 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++|.|.|++|+||||+++.+++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999999874
No 499
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.075 Score=49.41 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQIN 195 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~ 195 (831)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 500
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.97 E-value=0.61 Score=47.98 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
+..+++++|.+|+||||++..+..... ..-..+.+++..... ....-++...+.++.+.. ...+...+...+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~----~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~--~~~~~~~l~~~l~ 147 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH----GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 147 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE--ecCCHHHHHHHHH
Confidence 457999999999999999999887764 111245555543221 122223333444443321 1234444444443
Q ss_pred HHHc-CCcEEEEEcCCC
Q 003317 252 RVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 252 ~~l~-~k~~LlVlDdv~ 267 (831)
..-+ ++.=++++|..-
T Consensus 148 ~l~~~~~~D~ViIDt~G 164 (270)
T PRK06731 148 YFKEEARVDYILIDTAG 164 (270)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 3222 234578888764
Done!