Query 003317
Match_columns 831
No_of_seqs 463 out of 4134
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-47 7.5E-52 437.7 24.7 310 156-487 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.5E-40 2.9E-44 376.7 18.1 285 154-480 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-37 4.4E-42 395.6 29.4 312 150-487 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4E-35 1.4E-39 341.6 27.4 304 152-484 123-449 (591)
5 4fcg_A Uncharacterized protein 99.8 5.4E-19 1.8E-23 188.9 18.2 216 515-795 81-300 (328)
6 3o6n_A APL1; leucine-rich repe 99.8 7.4E-19 2.5E-23 193.3 18.3 259 511-804 65-348 (390)
7 2id5_A Lingo-1, leucine rich r 99.8 1E-18 3.5E-23 197.7 18.8 281 494-803 15-328 (477)
8 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.6E-23 188.8 17.3 258 510-803 61-341 (347)
9 3oja_B Anopheles plasmodium-re 99.8 1.3E-18 4.5E-23 202.1 17.3 260 511-805 71-355 (597)
10 4fmz_A Internalin; leucine ric 99.8 2.7E-18 9.4E-23 185.6 17.4 191 510-726 39-231 (347)
11 1o6v_A Internalin A; bacterial 99.8 1E-17 3.5E-22 188.6 20.0 268 498-805 54-341 (466)
12 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-19 1.9E-23 187.7 9.0 250 515-790 50-309 (313)
13 3v47_A TOLL-like receptor 5B a 99.7 1.2E-17 4.1E-22 187.8 18.1 282 494-804 14-404 (455)
14 4ecn_A Leucine-rich repeat pro 99.7 1.7E-17 6E-22 197.3 17.4 275 509-803 442-784 (876)
15 3o6n_A APL1; leucine-rich repe 99.7 3.7E-17 1.3E-21 179.7 18.1 238 510-783 88-350 (390)
16 4ecn_A Leucine-rich repeat pro 99.7 1.5E-17 5E-22 197.9 15.5 269 510-805 510-837 (876)
17 3oja_B Anopheles plasmodium-re 99.7 1.7E-17 5.9E-22 192.7 15.5 243 510-783 94-356 (597)
18 2ft3_A Biglycan; proteoglycan, 99.7 5.9E-17 2E-21 173.8 18.6 241 514-785 53-307 (332)
19 4fcg_A Uncharacterized protein 99.7 1.9E-17 6.7E-22 176.8 13.9 211 495-756 86-309 (328)
20 1xku_A Decorin; proteoglycan, 99.7 1.2E-16 4.1E-21 171.3 19.8 222 515-790 52-280 (330)
21 2ft3_A Biglycan; proteoglycan, 99.7 4.6E-17 1.6E-21 174.6 16.6 252 510-783 73-331 (332)
22 3bz5_A Internalin-J, INLJ; leu 99.7 3.3E-17 1.1E-21 183.2 15.4 182 511-727 60-244 (457)
23 2z7x_B TOLL-like receptor 1, v 99.7 9E-17 3.1E-21 183.9 18.8 134 663-803 322-476 (520)
24 1o6v_A Internalin A; bacterial 99.7 1.4E-16 4.7E-21 179.5 19.2 189 511-726 130-319 (466)
25 2id5_A Lingo-1, leucine rich r 99.7 6E-17 2E-21 183.2 16.3 248 511-783 76-331 (477)
26 3t6q_A CD180 antigen; protein- 99.7 8.3E-17 2.8E-21 187.9 17.9 120 494-625 16-140 (606)
27 1xku_A Decorin; proteoglycan, 99.7 2.1E-16 7.2E-21 169.4 18.8 251 510-782 71-329 (330)
28 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-16 5E-21 185.8 18.8 108 511-625 52-164 (606)
29 3v47_A TOLL-like receptor 5B a 99.7 1.4E-16 4.7E-21 179.1 17.9 259 511-789 75-412 (455)
30 4eco_A Uncharacterized protein 99.7 4.3E-17 1.5E-21 190.5 13.3 152 641-805 434-597 (636)
31 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-17 1E-21 191.6 11.6 268 510-804 280-554 (606)
32 3rgz_A Protein brassinosteroid 99.7 2.4E-17 8.3E-22 197.2 11.0 257 513-791 267-533 (768)
33 3t6q_A CD180 antigen; protein- 99.7 8.4E-17 2.9E-21 187.9 14.9 271 511-803 274-555 (606)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9E-16 3.1E-20 177.2 22.9 136 662-804 350-506 (562)
35 3j0a_A TOLL-like receptor 5; m 99.7 3.3E-16 1.1E-20 189.4 19.8 120 493-625 7-134 (844)
36 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.8E-21 173.3 13.7 262 494-783 35-312 (353)
37 2z81_A CD282 antigen, TOLL-lik 99.7 1.5E-16 5.2E-21 183.3 15.1 83 510-594 45-134 (549)
38 4eco_A Uncharacterized protein 99.7 2.8E-16 9.4E-21 183.7 17.4 202 509-726 241-467 (636)
39 3rgz_A Protein brassinosteroid 99.7 1.8E-16 6.3E-21 189.6 15.8 261 514-793 393-725 (768)
40 2z63_A TOLL-like receptor 4, v 99.7 4E-16 1.4E-20 180.7 17.6 60 743-804 465-527 (570)
41 2z81_A CD282 antigen, TOLL-lik 99.7 3.1E-16 1.1E-20 180.7 16.4 144 495-651 10-159 (549)
42 3zyi_A Leucine-rich repeat-con 99.7 6.8E-16 2.3E-20 173.0 18.6 219 515-783 75-301 (452)
43 3zyi_A Leucine-rich repeat-con 99.7 7.5E-16 2.6E-20 172.7 18.3 236 517-803 56-298 (452)
44 3zyj_A Leucine-rich repeat-con 99.7 1.2E-15 4E-20 170.4 19.4 219 515-783 64-290 (440)
45 3zyj_A Leucine-rich repeat-con 99.7 1.2E-15 4.1E-20 170.4 19.3 236 517-803 45-287 (440)
46 2z66_A Variable lymphocyte rec 99.7 2.5E-16 8.5E-21 166.9 12.3 236 495-783 12-259 (306)
47 2z63_A TOLL-like receptor 4, v 99.7 4E-16 1.4E-20 180.7 15.1 62 743-805 440-504 (570)
48 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-15 4.2E-20 180.5 18.8 106 512-625 46-156 (680)
49 2z66_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 164.9 13.5 215 497-759 35-259 (306)
50 3o53_A Protein LRIM1, AGAP0063 99.6 1.8E-16 6.2E-21 168.7 9.9 239 514-788 33-278 (317)
51 3bz5_A Internalin-J, INLJ; leu 99.6 8.3E-16 2.9E-20 171.7 15.6 219 511-765 81-303 (457)
52 1ogq_A PGIP-2, polygalacturona 99.6 2.3E-16 8E-21 167.4 10.5 230 509-765 70-308 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.6 5.2E-15 1.8E-19 170.3 22.5 247 493-803 43-292 (622)
54 1w5s_A Origin recognition comp 99.6 5.3E-15 1.8E-19 163.7 21.2 294 153-465 22-371 (412)
55 2qen_A Walker-type ATPase; unk 99.6 6.8E-15 2.3E-19 159.0 21.4 292 153-481 12-349 (350)
56 2z7x_B TOLL-like receptor 1, v 99.6 1.3E-15 4.5E-20 174.2 16.7 138 640-783 324-479 (520)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.9E-15 6.7E-20 174.4 17.9 121 493-627 34-159 (562)
58 2z80_A TOLL-like receptor 2, v 99.6 1.1E-15 3.7E-20 165.4 14.8 243 495-759 57-312 (353)
59 2fna_A Conserved hypothetical 99.6 2.5E-14 8.7E-19 154.9 25.2 289 153-480 13-356 (357)
60 1ozn_A Reticulon 4 receptor; N 99.6 7.7E-16 2.6E-20 161.3 12.4 214 495-727 16-236 (285)
61 1ziw_A TOLL-like receptor 3; i 99.6 3.4E-15 1.2E-19 176.7 16.9 287 494-805 8-363 (680)
62 1ozn_A Reticulon 4 receptor; N 99.6 3.3E-15 1.1E-19 156.4 14.8 216 518-783 14-236 (285)
63 3oja_A Leucine-rich immune mol 99.6 9.5E-16 3.2E-20 172.9 11.1 231 514-780 33-270 (487)
64 3j0a_A TOLL-like receptor 5; m 99.6 2.1E-14 7.2E-19 173.6 21.9 258 510-789 43-378 (844)
65 4g8a_A TOLL-like receptor 4; l 99.6 6.7E-15 2.3E-19 172.7 16.2 96 497-597 38-138 (635)
66 1h6u_A Internalin H; cell adhe 99.6 5E-15 1.7E-19 156.6 12.9 105 510-627 36-142 (308)
67 3o53_A Protein LRIM1, AGAP0063 99.6 2.5E-16 8.6E-21 167.6 2.7 235 516-785 11-250 (317)
68 3rfs_A Internalin B, repeat mo 99.6 9.2E-15 3.1E-19 151.8 14.1 206 510-771 36-245 (272)
69 1jl5_A Outer protein YOPM; leu 99.6 5.4E-15 1.9E-19 165.0 12.3 238 514-791 10-275 (454)
70 3g06_A SSPH2 (leucine-rich rep 99.6 4.5E-14 1.5E-18 162.5 18.2 230 494-784 65-296 (622)
71 2o6q_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 146.8 15.9 195 516-759 17-216 (270)
72 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.3E-20 171.9 4.8 217 534-785 31-250 (487)
73 3qfl_A MLA10; coiled-coil, (CC 99.5 1.5E-14 5.1E-19 126.4 10.3 83 9-98 1-84 (115)
74 2xwt_C Thyrotropin receptor; s 99.5 1.3E-14 4.3E-19 147.6 10.7 197 538-785 32-239 (239)
75 4ay9_X Follicle-stimulating ho 99.5 3.6E-14 1.2E-18 153.1 14.1 218 538-781 31-255 (350)
76 1wwl_A Monocyte differentiatio 99.5 1.5E-14 5.2E-19 153.4 10.9 198 514-758 94-306 (312)
77 1jl5_A Outer protein YOPM; leu 99.5 9.2E-14 3.2E-18 155.0 16.9 175 515-726 111-287 (454)
78 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 143.4 16.1 195 538-783 17-216 (270)
79 1wwl_A Monocyte differentiatio 99.5 4.9E-15 1.7E-19 157.2 5.7 240 513-782 41-306 (312)
80 1h6u_A Internalin H; cell adhe 99.5 4.9E-14 1.7E-18 149.0 12.8 177 522-725 26-204 (308)
81 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.8E-18 144.0 15.1 33 748-781 200-233 (276)
82 4g8a_A TOLL-like receptor 4; l 99.5 9.9E-14 3.4E-18 162.7 16.2 150 640-803 420-575 (635)
83 2xwt_C Thyrotropin receptor; s 99.5 6.3E-14 2.2E-18 142.4 11.9 203 546-803 22-234 (239)
84 3rfs_A Internalin B, repeat mo 99.5 1.5E-14 5E-19 150.2 7.3 222 515-794 19-244 (272)
85 1p9a_G Platelet glycoprotein I 99.5 1.5E-13 5E-18 143.9 14.2 195 511-758 6-205 (290)
86 2z62_A TOLL-like receptor 4, v 99.5 1.4E-13 4.9E-18 143.1 13.8 197 515-758 28-234 (276)
87 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.8E-18 144.0 12.7 196 534-783 7-206 (290)
88 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.6E-18 143.1 11.7 169 510-727 41-211 (291)
89 1m9s_A Internalin B; cell inva 99.4 1.7E-13 5.9E-18 157.5 11.1 170 510-728 38-209 (605)
90 2ast_B S-phase kinase-associat 99.4 1.8E-14 6.1E-19 154.7 2.7 199 515-758 70-282 (336)
91 4ay9_X Follicle-stimulating ho 99.4 6.6E-13 2.3E-17 143.1 13.3 231 547-803 21-254 (350)
92 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.8E-18 148.5 6.9 108 510-624 88-205 (336)
93 4glp_A Monocyte differentiatio 99.4 7.1E-13 2.4E-17 140.4 12.6 201 515-758 91-304 (310)
94 2ca6_A RAN GTPase-activating p 99.4 3.7E-14 1.3E-18 155.4 0.9 84 511-596 28-135 (386)
95 2qby_B CDC6 homolog 3, cell di 99.4 3.4E-11 1.2E-15 131.6 24.5 293 153-465 20-339 (384)
96 1m9s_A Internalin B; cell inva 99.4 3.2E-13 1.1E-17 155.3 8.1 185 516-759 22-208 (605)
97 2v1u_A Cell division control p 99.4 1.5E-11 5.2E-16 134.5 21.0 290 153-465 19-351 (387)
98 2ca6_A RAN GTPase-activating p 99.4 3E-14 1E-18 156.1 -0.9 253 517-783 11-314 (386)
99 1fnn_A CDC6P, cell division co 99.4 6.3E-11 2.1E-15 129.8 25.2 289 153-465 17-351 (389)
100 4glp_A Monocyte differentiatio 99.4 1.1E-12 3.7E-17 139.0 9.7 202 557-783 90-305 (310)
101 3m19_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 129.3 12.7 172 515-727 14-190 (251)
102 3ogk_B Coronatine-insensitive 99.3 3.4E-13 1.2E-17 156.8 4.5 133 557-702 269-412 (592)
103 3m19_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 127.1 14.2 81 516-597 36-121 (251)
104 1h6t_A Internalin B; cell adhe 99.3 4.8E-12 1.6E-16 132.4 11.9 178 522-758 31-210 (291)
105 2qby_A CDC6 homolog 1, cell di 99.3 3.9E-11 1.3E-15 131.2 18.9 291 153-464 20-347 (386)
106 1z7x_W Ribonuclease inhibitor; 99.3 1.9E-13 6.6E-18 153.6 -0.3 38 745-783 281-324 (461)
107 4ezg_A Putative uncharacterize 99.3 7.8E-12 2.7E-16 122.7 10.3 152 554-758 40-191 (197)
108 3goz_A Leucine-rich repeat-con 99.3 6.8E-13 2.3E-17 143.8 2.9 239 514-759 21-295 (362)
109 3goz_A Leucine-rich repeat-con 99.2 2.8E-12 9.4E-17 139.0 4.9 253 520-783 3-295 (362)
110 1xeu_A Internalin C; cellular 99.2 5.1E-12 1.7E-16 130.1 6.4 165 535-727 17-183 (263)
111 2o6s_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 118.3 11.8 77 519-597 11-90 (208)
112 3cvr_A Invasion plasmid antige 99.2 3.4E-11 1.2E-15 136.8 12.2 179 515-727 59-241 (571)
113 1z7x_W Ribonuclease inhibitor; 99.2 6.8E-13 2.3E-17 149.1 -1.9 263 510-783 108-409 (461)
114 2p1m_B Transport inhibitor res 99.2 3.8E-12 1.3E-16 148.0 4.0 134 581-725 287-441 (594)
115 4ezg_A Putative uncharacterize 99.2 2.5E-11 8.5E-16 119.0 8.9 149 512-704 41-192 (197)
116 1njg_A DNA polymerase III subu 99.2 3.3E-10 1.1E-14 115.1 16.6 197 153-361 23-231 (250)
117 1dce_A Protein (RAB geranylger 99.2 1.4E-12 4.9E-17 148.9 -1.5 119 641-778 442-566 (567)
118 2o6s_A Variable lymphocyte rec 99.2 9.5E-11 3.3E-15 116.0 11.6 169 547-772 19-189 (208)
119 3ogk_B Coronatine-insensitive 99.2 1.2E-11 4.2E-16 143.6 5.3 256 512-788 240-528 (592)
120 3cvr_A Invasion plasmid antige 99.1 8.8E-11 3E-15 133.4 11.3 53 538-597 60-114 (571)
121 2chg_A Replication factor C sm 99.1 3.7E-10 1.3E-14 113.0 14.4 182 153-357 17-203 (226)
122 1xeu_A Internalin C; cellular 99.1 9.1E-11 3.1E-15 120.6 9.7 146 510-704 36-183 (263)
123 2p1m_B Transport inhibitor res 99.1 1.8E-11 6.2E-16 142.3 0.8 60 663-725 287-347 (594)
124 2v9t_B SLIT homolog 2 protein 99.1 6.3E-10 2.2E-14 111.0 12.0 80 516-596 33-117 (220)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 5.7E-10 2E-14 111.3 11.2 78 518-597 14-95 (220)
126 2xot_A Amphoterin-induced prot 99.0 3.9E-10 1.3E-14 121.9 10.4 171 518-726 21-199 (361)
127 2v9t_B SLIT homolog 2 protein 99.0 7.4E-10 2.5E-14 110.5 10.8 78 518-597 14-94 (220)
128 2xot_A Amphoterin-induced prot 99.0 4.2E-10 1.5E-14 121.6 9.5 171 494-704 22-200 (361)
129 3e6j_A Variable lymphocyte rec 99.0 9.5E-10 3.3E-14 110.4 11.0 146 518-704 22-170 (229)
130 1sxj_B Activator 1 37 kDa subu 99.0 2.3E-09 7.7E-14 114.0 13.7 185 153-360 21-212 (323)
131 3e6j_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 108.5 9.6 142 497-678 26-172 (229)
132 2v70_A SLIT-2, SLIT homolog 2 98.9 3E-09 1E-13 106.0 11.2 116 495-622 16-137 (220)
133 2ell_A Acidic leucine-rich nuc 98.9 1.6E-09 5.5E-14 103.0 7.4 103 514-625 23-131 (168)
134 1a9n_A U2A', U2A'; complex (nu 98.9 1.8E-09 6.3E-14 103.5 5.8 109 511-627 15-126 (176)
135 2wfh_A SLIT homolog 2 protein 98.8 1.1E-08 3.7E-13 99.6 11.1 78 518-597 13-92 (193)
136 2je0_A Acidic leucine-rich nuc 98.8 3.6E-09 1.2E-13 98.3 6.5 105 514-627 16-126 (149)
137 1hqc_A RUVB; extended AAA-ATPa 98.8 1.7E-07 5.9E-12 99.4 20.0 270 153-464 12-324 (324)
138 4b8c_D Glucose-repressible alc 98.8 3.1E-09 1.1E-13 125.3 6.7 114 551-679 217-330 (727)
139 1dce_A Protein (RAB geranylger 98.8 6.1E-09 2.1E-13 118.9 7.2 104 515-627 441-546 (567)
140 2ell_A Acidic leucine-rich nuc 98.7 2.9E-08 9.9E-13 94.2 10.3 110 510-625 44-158 (168)
141 4b8c_D Glucose-repressible alc 98.7 4.7E-09 1.6E-13 123.8 5.7 108 510-627 219-329 (727)
142 1iqp_A RFCS; clamp loader, ext 98.7 3.2E-08 1.1E-12 105.2 11.2 185 153-360 25-214 (327)
143 1w8a_A SLIT protein; signaling 98.7 2.9E-08 9.9E-13 96.5 9.7 78 518-597 11-92 (192)
144 1a9n_A U2A', U2A'; complex (nu 98.7 2.1E-08 7.1E-13 96.0 8.5 121 498-627 27-153 (176)
145 1w8a_A SLIT protein; signaling 98.7 1.8E-08 6.1E-13 98.0 7.8 120 495-626 13-138 (192)
146 2wfh_A SLIT homolog 2 protein 98.7 3.1E-08 1.1E-12 96.3 9.5 121 494-626 14-138 (193)
147 3sb4_A Hypothetical leucine ri 98.7 3.4E-08 1.1E-12 105.2 10.6 238 514-779 48-328 (329)
148 2je0_A Acidic leucine-rich nuc 98.7 2.4E-08 8.3E-13 92.6 7.8 106 510-621 37-147 (149)
149 3te6_A Regulatory protein SIR3 98.7 2.3E-07 7.8E-12 96.3 15.7 170 155-327 22-213 (318)
150 2o6r_A Variable lymphocyte rec 98.6 8.1E-08 2.8E-12 92.0 10.1 105 514-626 27-136 (177)
151 1ds9_A Outer arm dynein; leuci 98.6 3.3E-09 1.1E-13 103.9 -0.3 72 547-629 37-108 (198)
152 2o6r_A Variable lymphocyte rec 98.6 1.4E-07 4.9E-12 90.2 10.7 78 518-597 10-90 (177)
153 2chq_A Replication factor C sm 98.6 2.2E-07 7.6E-12 98.3 13.2 179 153-357 17-203 (319)
154 2r9u_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 90.5 8.4 99 518-625 15-116 (174)
155 3g39_A Variable lymphocyte rec 98.6 1.3E-07 4.3E-12 89.9 8.5 100 517-625 11-113 (170)
156 1jr3_A DNA polymerase III subu 98.6 7.8E-07 2.7E-11 96.4 15.8 194 153-358 16-221 (373)
157 2r9u_A Variable lymphocyte rec 98.5 1.9E-07 6.4E-12 89.0 8.9 99 494-597 16-119 (174)
158 1jbk_A CLPB protein; beta barr 98.5 1.2E-07 4.3E-12 91.8 7.4 47 153-199 22-68 (195)
159 3g39_A Variable lymphocyte rec 98.5 4E-07 1.4E-11 86.4 8.9 98 495-597 14-116 (170)
160 3sb4_A Hypothetical leucine ri 98.4 2.6E-07 9.1E-12 98.2 8.5 250 513-793 23-317 (329)
161 1ds9_A Outer arm dynein; leuci 98.4 1.5E-08 5E-13 99.2 -2.2 107 511-626 44-152 (198)
162 3bos_A Putative DNA replicatio 98.4 4.9E-07 1.7E-11 91.2 8.9 171 153-357 28-216 (242)
163 2z4s_A Chromosomal replication 98.4 3.4E-06 1.2E-10 92.9 15.0 181 154-356 106-304 (440)
164 3h4m_A Proteasome-activating n 98.4 1E-06 3.6E-11 91.4 10.0 176 153-356 17-229 (285)
165 1sxj_A Activator 1 95 kDa subu 98.3 7E-06 2.4E-10 92.6 16.8 188 153-359 39-254 (516)
166 3pvs_A Replication-associated 98.3 1.2E-05 4E-10 88.4 18.1 176 153-357 26-214 (447)
167 4fdw_A Leucine rich hypothetic 98.3 6.5E-06 2.2E-10 89.5 15.0 254 515-806 113-381 (401)
168 1sxj_D Activator 1 41 kDa subu 98.3 4.4E-06 1.5E-10 89.6 12.7 193 153-357 37-234 (353)
169 1sxj_E Activator 1 40 kDa subu 98.2 5.5E-06 1.9E-10 88.9 13.0 196 153-358 14-237 (354)
170 1d2n_A N-ethylmaleimide-sensit 98.2 4.1E-05 1.4E-09 78.6 18.9 192 153-380 33-264 (272)
171 3pfi_A Holliday junction ATP-d 98.2 2.3E-05 8E-10 83.3 17.2 170 153-357 29-226 (338)
172 3syl_A Protein CBBX; photosynt 98.2 6.8E-06 2.3E-10 86.3 12.0 153 154-328 32-220 (309)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.4E-05 4.8E-10 81.6 13.8 179 153-357 6-221 (262)
174 4fdw_A Leucine rich hypothetic 98.2 5.2E-05 1.8E-09 82.4 18.4 209 516-758 136-355 (401)
175 3u61_B DNA polymerase accessor 98.1 2.6E-05 9.1E-10 82.4 14.7 175 153-355 26-213 (324)
176 3d8b_A Fidgetin-like protein 1 98.1 9.1E-05 3.1E-09 79.2 17.5 179 153-359 84-296 (357)
177 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00023 8E-09 74.7 20.2 179 153-359 12-224 (322)
178 3uk6_A RUVB-like 2; hexameric 98.0 2.3E-05 7.9E-10 84.5 12.8 192 153-356 44-301 (368)
179 1l8q_A Chromosomal replication 98.0 4.8E-05 1.6E-09 80.3 14.6 174 153-353 11-203 (324)
180 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.3E-11 81.3 2.6 39 749-787 115-154 (176)
181 2ifg_A High affinity nerve gro 98.0 5.6E-06 1.9E-10 88.5 7.4 83 511-595 27-115 (347)
182 3eie_A Vacuolar protein sortin 98.0 3.8E-05 1.3E-09 80.9 13.7 176 153-358 18-228 (322)
183 3b9p_A CG5977-PA, isoform A; A 98.0 0.00028 9.7E-09 73.3 20.2 176 153-358 21-233 (297)
184 3vfd_A Spastin; ATPase, microt 98.0 0.00017 5.7E-09 78.2 19.0 179 153-358 115-326 (389)
185 2ifg_A High affinity nerve gro 98.0 6.8E-06 2.3E-10 87.9 7.7 99 519-626 12-115 (347)
186 2qp9_X Vacuolar protein sortin 98.0 5.3E-05 1.8E-09 80.9 14.2 177 153-358 51-261 (355)
187 1a5t_A Delta prime, HOLB; zinc 98.0 8.9E-05 3E-09 78.5 15.6 170 159-356 8-203 (334)
188 1sxj_C Activator 1 40 kDa subu 98.0 6.2E-05 2.1E-09 80.0 14.4 173 153-354 25-208 (340)
189 3un9_A NLR family member X1; l 98.0 1.7E-06 6E-11 93.1 1.9 109 515-627 72-196 (372)
190 2p65_A Hypothetical protein PF 97.9 2.8E-05 9.4E-10 74.6 9.7 47 153-199 22-68 (187)
191 2zan_A Vacuolar protein sortin 97.9 0.0003 1E-08 77.4 18.7 180 153-358 134-345 (444)
192 3cf0_A Transitional endoplasmi 97.8 0.00031 1.1E-08 73.1 15.8 173 153-353 15-223 (301)
193 2ra8_A Uncharacterized protein 97.8 9.2E-06 3.2E-10 86.7 4.1 147 549-727 163-318 (362)
194 3un9_A NLR family member X1; l 97.8 2.4E-06 8E-11 92.1 -0.6 161 557-727 71-250 (372)
195 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.1E-10 74.1 5.1 36 558-594 61-96 (176)
196 3pxg_A Negative regulator of g 97.8 0.00016 5.6E-09 80.1 13.3 150 153-326 180-339 (468)
197 2ra8_A Uncharacterized protein 97.7 1.6E-05 5.6E-10 84.8 4.9 170 549-758 130-317 (362)
198 4b4t_J 26S protease regulatory 97.7 0.00031 1.1E-08 74.6 14.3 171 153-352 148-355 (405)
199 1qvr_A CLPB protein; coiled co 97.7 0.00012 4.1E-09 87.8 11.8 156 152-325 169-345 (854)
200 2gno_A DNA polymerase III, gam 97.6 0.00025 8.5E-09 73.6 11.8 148 157-325 1-152 (305)
201 3ec2_A DNA replication protein 97.6 2.6E-05 8.8E-10 74.5 3.3 116 158-294 19-142 (180)
202 4b4t_H 26S protease regulatory 97.6 0.00059 2E-08 73.5 14.1 170 154-351 210-415 (467)
203 1in4_A RUVB, holliday junction 97.6 0.0014 4.7E-08 69.3 16.8 170 153-357 25-222 (334)
204 1lv7_A FTSH; alpha/beta domain 97.6 0.0013 4.4E-08 66.7 16.0 175 153-355 12-222 (257)
205 2r62_A Cell division protease 97.6 5.3E-05 1.8E-09 77.6 5.5 151 153-327 11-198 (268)
206 3hu3_A Transitional endoplasmi 97.6 0.00048 1.6E-08 76.3 13.5 176 153-356 204-413 (489)
207 4b4t_L 26S protease subunit RP 97.6 0.00028 9.5E-09 76.3 11.2 170 153-351 181-387 (437)
208 3n70_A Transport activator; si 97.5 6.4E-05 2.2E-09 68.8 5.1 45 154-198 2-48 (145)
209 3pxi_A Negative regulator of g 97.5 0.00077 2.6E-08 79.8 15.5 150 153-326 180-339 (758)
210 4b4t_M 26S protease regulatory 97.5 0.00041 1.4E-08 75.0 11.7 170 153-351 181-387 (434)
211 4fs7_A Uncharacterized protein 97.5 0.0008 2.7E-08 73.0 14.0 35 511-546 67-103 (394)
212 4b4t_I 26S protease regulatory 97.5 0.00081 2.8E-08 71.7 13.2 169 154-351 183-388 (437)
213 4b4t_K 26S protease regulatory 97.4 0.0008 2.7E-08 72.6 12.7 171 153-351 172-379 (428)
214 2ce7_A Cell division protein F 97.4 0.0011 3.6E-08 73.0 13.2 171 153-351 16-221 (476)
215 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0014 5E-08 77.6 15.5 156 153-325 186-362 (758)
216 1ofh_A ATP-dependent HSL prote 97.3 0.0012 4.1E-08 68.9 12.6 47 153-199 15-75 (310)
217 2w58_A DNAI, primosome compone 97.3 0.00047 1.6E-08 67.0 8.6 120 153-294 25-158 (202)
218 4fcw_A Chaperone protein CLPB; 97.2 0.0013 4.5E-08 68.6 10.8 47 153-199 17-72 (311)
219 2bjv_A PSP operon transcriptio 97.0 0.001 3.6E-08 67.7 7.3 47 153-199 6-54 (265)
220 3t15_A Ribulose bisphosphate c 96.9 0.0056 1.9E-07 63.2 12.5 27 173-199 35-61 (293)
221 2c9o_A RUVB-like 1; hexameric 96.9 0.0067 2.3E-07 66.9 13.7 47 153-199 37-88 (456)
222 1ojl_A Transcriptional regulat 96.9 0.0013 4.3E-08 68.4 7.2 46 153-198 2-49 (304)
223 3rw6_A Nuclear RNA export fact 96.8 0.00086 3E-08 67.6 5.1 63 514-596 169-233 (267)
224 2x8a_A Nuclear valosin-contain 96.8 0.016 5.4E-07 59.0 14.5 149 153-326 10-192 (274)
225 3m6a_A ATP-dependent protease 96.8 0.016 5.6E-07 65.2 15.8 46 154-199 82-133 (543)
226 3cf2_A TER ATPase, transitiona 96.7 0.0016 5.6E-08 75.7 7.0 171 154-352 205-408 (806)
227 3pxi_A Negative regulator of g 96.7 0.002 6.7E-08 76.3 7.7 147 153-325 491-675 (758)
228 2dhr_A FTSH; AAA+ protein, hex 96.7 0.011 3.9E-07 65.1 12.8 167 153-351 31-236 (499)
229 4fs7_A Uncharacterized protein 96.6 0.009 3.1E-07 64.6 11.9 78 511-592 158-239 (394)
230 4gt6_A Cell surface protein; l 96.6 0.019 6.7E-07 61.9 14.2 72 517-591 66-145 (394)
231 3rw6_A Nuclear RNA export fact 96.6 0.0014 4.9E-08 66.0 4.7 59 512-589 193-257 (267)
232 1io0_A Tropomodulin; LRR prote 96.6 0.00068 2.3E-08 64.8 2.0 110 513-627 34-164 (185)
233 1ixz_A ATP-dependent metallopr 96.6 0.0094 3.2E-07 60.0 10.7 170 153-351 16-221 (254)
234 2kjq_A DNAA-related protein; s 96.6 0.0034 1.2E-07 57.3 6.6 40 173-216 35-74 (149)
235 4gt6_A Cell surface protein; l 96.5 0.033 1.1E-06 60.2 15.5 81 511-593 83-170 (394)
236 1iy2_A ATP-dependent metallopr 96.5 0.009 3.1E-07 61.1 10.3 170 153-351 40-245 (278)
237 3hr8_A Protein RECA; alpha and 96.5 0.0079 2.7E-07 63.3 9.6 87 173-268 60-150 (356)
238 2cvh_A DNA repair and recombin 96.5 0.0075 2.6E-07 59.1 8.8 88 173-268 19-116 (220)
239 1ypw_A Transitional endoplasmi 96.4 0.0062 2.1E-07 72.0 9.4 151 153-328 204-388 (806)
240 1io0_A Tropomodulin; LRR prote 96.4 0.0015 5.3E-08 62.3 3.4 15 662-676 148-162 (185)
241 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0019 6.5E-08 66.2 4.2 70 173-268 122-193 (331)
242 1n0w_A DNA repair protein RAD5 96.4 0.014 4.7E-07 58.2 10.5 93 173-268 23-130 (243)
243 2zr9_A Protein RECA, recombina 96.3 0.012 4.2E-07 62.0 9.6 87 173-268 60-150 (349)
244 1xp8_A RECA protein, recombina 96.2 0.015 5.3E-07 61.5 9.7 87 173-268 73-163 (366)
245 1v5w_A DMC1, meiotic recombina 96.1 0.036 1.2E-06 58.4 12.4 92 173-267 121-229 (343)
246 3io5_A Recombination and repai 96.1 0.019 6.6E-07 58.5 9.7 88 175-269 29-123 (333)
247 1u94_A RECA protein, recombina 96.1 0.014 4.8E-07 61.6 9.0 86 173-267 62-151 (356)
248 2z43_A DNA repair and recombin 96.1 0.027 9.4E-07 58.8 11.2 92 173-267 106-213 (324)
249 1jr3_D DNA polymerase III, del 96.0 0.06 2.1E-06 56.8 13.8 164 165-356 9-183 (343)
250 1g5t_A COB(I)alamin adenosyltr 96.0 0.0037 1.3E-07 59.2 3.3 118 173-295 27-163 (196)
251 2i1q_A DNA repair and recombin 95.8 0.02 6.9E-07 59.9 8.9 92 173-267 97-214 (322)
252 2b8t_A Thymidine kinase; deoxy 95.8 0.0036 1.2E-07 61.2 2.6 113 173-295 11-126 (223)
253 3co5_A Putative two-component 95.7 0.0026 8.8E-08 57.8 1.2 44 154-197 5-50 (143)
254 1qvr_A CLPB protein; coiled co 95.7 0.014 4.9E-07 69.8 8.0 46 154-199 559-613 (854)
255 3dm5_A SRP54, signal recogniti 95.7 0.053 1.8E-06 58.5 11.5 27 173-199 99-125 (443)
256 1rz3_A Hypothetical protein rb 95.6 0.012 4.1E-07 56.9 5.4 42 158-199 3-47 (201)
257 1r6b_X CLPA protein; AAA+, N-t 95.5 0.017 5.9E-07 68.3 7.6 46 153-198 458-512 (758)
258 2px0_A Flagellar biosynthesis 95.5 0.047 1.6E-06 56.1 9.9 86 173-265 104-190 (296)
259 3c8u_A Fructokinase; YP_612366 95.4 0.013 4.5E-07 56.9 5.2 40 160-199 6-47 (208)
260 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.047 1.6E-06 53.8 9.2 88 173-267 22-133 (235)
261 2xxa_A Signal recognition part 95.2 0.12 4.3E-06 55.9 12.5 91 173-266 99-192 (433)
262 3e70_C DPA, signal recognition 95.1 0.13 4.4E-06 53.5 11.8 58 172-233 127-185 (328)
263 3kl4_A SRP54, signal recogniti 95.1 0.091 3.1E-06 56.6 10.8 91 173-267 96-189 (433)
264 3lda_A DNA repair protein RAD5 95.0 0.12 4E-06 55.4 11.4 94 173-267 177-283 (400)
265 1qhx_A CPT, protein (chloramph 95.0 0.013 4.6E-07 55.1 3.5 25 175-199 4-28 (178)
266 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.8E-07 54.5 3.6 25 175-199 2-26 (173)
267 2ck3_D ATP synthase subunit be 95.0 0.15 5.1E-06 55.0 11.9 100 165-267 143-263 (482)
268 3cf2_A TER ATPase, transitiona 94.9 0.056 1.9E-06 63.0 9.1 170 153-350 477-682 (806)
269 3vaa_A Shikimate kinase, SK; s 94.9 0.016 5.6E-07 55.8 3.9 27 173-199 24-50 (199)
270 3lw7_A Adenylate kinase relate 94.8 0.015 5E-07 54.6 3.5 22 175-197 2-23 (179)
271 1vma_A Cell division protein F 94.8 0.071 2.4E-06 54.8 8.8 90 173-267 103-196 (306)
272 1j8m_F SRP54, signal recogniti 94.8 0.12 4.2E-06 52.9 10.6 89 174-266 98-189 (297)
273 3sr0_A Adenylate kinase; phosp 94.8 0.063 2.2E-06 51.7 7.7 74 176-268 2-85 (206)
274 1pzn_A RAD51, DNA repair and r 94.7 0.07 2.4E-06 56.2 8.7 95 173-268 130-242 (349)
275 3bh0_A DNAB-like replicative h 94.7 0.11 3.7E-06 54.0 10.0 52 173-230 67-118 (315)
276 1kgd_A CASK, peripheral plasma 94.7 0.017 5.8E-07 54.6 3.4 25 174-198 5-29 (180)
277 3uie_A Adenylyl-sulfate kinase 94.7 0.021 7.1E-07 55.1 4.1 29 171-199 22-50 (200)
278 3ice_A Transcription terminati 94.6 0.049 1.7E-06 57.0 6.9 99 164-267 163-271 (422)
279 3trf_A Shikimate kinase, SK; a 94.6 0.02 6.7E-07 54.4 3.6 26 174-199 5-30 (185)
280 2r44_A Uncharacterized protein 94.6 0.022 7.4E-07 59.9 4.3 45 153-199 27-71 (331)
281 1zp6_A Hypothetical protein AT 94.5 0.02 6.9E-07 54.6 3.6 25 173-197 8-32 (191)
282 2ffh_A Protein (FFH); SRP54, s 94.5 0.14 4.8E-06 55.1 10.5 89 173-266 97-189 (425)
283 1kag_A SKI, shikimate kinase I 94.5 0.017 5.9E-07 54.0 3.0 25 175-199 5-29 (173)
284 1ly1_A Polynucleotide kinase; 94.5 0.021 7.3E-07 53.7 3.6 22 175-196 3-24 (181)
285 2ga8_A Hypothetical 39.9 kDa p 94.4 0.041 1.4E-06 57.3 5.8 44 156-199 2-49 (359)
286 2yvu_A Probable adenylyl-sulfa 94.4 0.028 9.4E-07 53.4 4.2 27 173-199 12-38 (186)
287 2hf9_A Probable hydrogenase ni 94.4 0.036 1.2E-06 54.4 5.1 38 162-199 26-63 (226)
288 4eun_A Thermoresistant glucoki 94.4 0.025 8.6E-07 54.4 3.9 27 172-198 27-53 (200)
289 3cmu_A Protein RECA, recombina 94.4 0.098 3.3E-06 66.5 10.0 86 173-267 1426-1515(2050)
290 1nks_A Adenylate kinase; therm 94.3 0.025 8.5E-07 53.9 3.7 25 175-199 2-26 (194)
291 3hws_A ATP-dependent CLP prote 94.3 0.038 1.3E-06 58.8 5.5 45 155-199 17-76 (363)
292 3t61_A Gluconokinase; PSI-biol 94.3 0.02 6.9E-07 55.2 3.0 25 174-198 18-42 (202)
293 1odf_A YGR205W, hypothetical 3 94.3 0.039 1.3E-06 56.4 5.3 28 172-199 29-56 (290)
294 1g8p_A Magnesium-chelatase 38 94.3 0.021 7.1E-07 60.5 3.3 47 153-199 24-70 (350)
295 2orw_A Thymidine kinase; TMTK, 94.3 0.0026 9E-08 60.5 -3.4 25 175-199 4-28 (184)
296 1sky_E F1-ATPase, F1-ATP synth 94.2 0.12 4.1E-06 55.9 9.1 91 174-267 151-255 (473)
297 3iij_A Coilin-interacting nucl 94.2 0.025 8.4E-07 53.4 3.3 27 173-199 10-36 (180)
298 2rhm_A Putative kinase; P-loop 94.2 0.03 1E-06 53.4 4.0 25 174-198 5-29 (193)
299 3tr0_A Guanylate kinase, GMP k 94.1 0.026 9E-07 54.4 3.5 25 174-198 7-31 (205)
300 1um8_A ATP-dependent CLP prote 94.1 0.047 1.6E-06 58.4 5.8 46 154-199 22-97 (376)
301 1kht_A Adenylate kinase; phosp 94.1 0.028 9.7E-07 53.5 3.6 25 175-199 4-28 (192)
302 1knq_A Gluconate kinase; ALFA/ 94.1 0.03 1E-06 52.5 3.7 26 173-198 7-32 (175)
303 1ex7_A Guanylate kinase; subst 94.1 0.019 6.4E-07 54.4 2.2 25 175-199 2-26 (186)
304 3tau_A Guanylate kinase, GMP k 94.1 0.029 9.8E-07 54.5 3.6 28 172-199 6-33 (208)
305 2ze6_A Isopentenyl transferase 94.1 0.03 1E-06 56.2 3.8 25 175-199 2-26 (253)
306 2wsm_A Hydrogenase expression/ 94.1 0.037 1.3E-06 54.1 4.5 41 159-199 15-55 (221)
307 2qor_A Guanylate kinase; phosp 94.0 0.026 8.8E-07 54.6 3.2 26 173-198 11-36 (204)
308 4h09_A Hypothetical leucine ri 94.0 0.99 3.4E-05 47.9 16.1 73 515-592 46-122 (379)
309 1via_A Shikimate kinase; struc 94.0 0.026 8.8E-07 53.0 3.0 25 175-199 5-29 (175)
310 3a00_A Guanylate kinase, GMP k 94.0 0.024 8.3E-07 53.8 2.9 25 175-199 2-26 (186)
311 1fx0_B ATP synthase beta chain 94.0 0.16 5.6E-06 55.0 9.5 100 165-267 155-276 (498)
312 1ye8_A Protein THEP1, hypothet 93.9 0.031 1.1E-06 52.6 3.4 24 176-199 2-25 (178)
313 2bdt_A BH3686; alpha-beta prot 93.9 0.032 1.1E-06 53.1 3.6 23 175-197 3-25 (189)
314 2bbw_A Adenylate kinase 4, AK4 93.9 0.034 1.2E-06 55.6 3.9 27 173-199 26-52 (246)
315 3umf_A Adenylate kinase; rossm 93.9 0.037 1.2E-06 53.8 3.9 27 173-199 28-54 (217)
316 1gvn_B Zeta; postsegregational 93.9 0.053 1.8E-06 55.5 5.3 26 173-198 32-57 (287)
317 2jaq_A Deoxyguanosine kinase; 93.9 0.033 1.1E-06 53.7 3.6 24 176-199 2-25 (205)
318 2dr3_A UPF0273 protein PH0284; 93.9 0.14 4.9E-06 50.7 8.5 48 173-226 22-69 (247)
319 3nbx_X ATPase RAVA; AAA+ ATPas 93.9 0.037 1.3E-06 61.1 4.4 45 153-199 22-66 (500)
320 3asz_A Uridine kinase; cytidin 93.9 0.035 1.2E-06 53.8 3.8 27 173-199 5-31 (211)
321 2c95_A Adenylate kinase 1; tra 93.8 0.037 1.3E-06 52.9 3.8 27 173-199 8-34 (196)
322 1cke_A CK, MSSA, protein (cyti 93.8 0.034 1.2E-06 54.7 3.6 24 175-198 6-29 (227)
323 2j41_A Guanylate kinase; GMP, 93.8 0.036 1.2E-06 53.5 3.7 25 174-198 6-30 (207)
324 1lvg_A Guanylate kinase, GMP k 93.8 0.028 9.6E-07 54.0 2.9 25 174-198 4-28 (198)
325 1tev_A UMP-CMP kinase; ploop, 93.8 0.039 1.3E-06 52.7 3.8 25 174-198 3-27 (196)
326 3ney_A 55 kDa erythrocyte memb 93.8 0.038 1.3E-06 52.6 3.7 26 173-198 18-43 (197)
327 1zuh_A Shikimate kinase; alpha 93.7 0.038 1.3E-06 51.4 3.6 27 173-199 6-32 (168)
328 1y63_A LMAJ004144AAA protein; 93.7 0.04 1.4E-06 52.2 3.8 25 173-197 9-33 (184)
329 3fwy_A Light-independent proto 93.7 0.036 1.2E-06 57.4 3.7 41 172-216 46-86 (314)
330 1xjc_A MOBB protein homolog; s 93.7 0.042 1.5E-06 50.9 3.7 27 173-199 3-29 (169)
331 2iyv_A Shikimate kinase, SK; t 93.7 0.03 1E-06 53.0 2.8 25 175-199 3-27 (184)
332 2if2_A Dephospho-COA kinase; a 93.6 0.037 1.3E-06 53.4 3.4 22 175-196 2-23 (204)
333 3cm0_A Adenylate kinase; ATP-b 93.6 0.042 1.4E-06 52.0 3.8 25 174-198 4-28 (186)
334 1ukz_A Uridylate kinase; trans 93.6 0.044 1.5E-06 52.8 3.9 26 173-198 14-39 (203)
335 2bwj_A Adenylate kinase 5; pho 93.5 0.041 1.4E-06 52.7 3.6 25 174-198 12-36 (199)
336 1e6c_A Shikimate kinase; phosp 93.5 0.036 1.2E-06 51.8 3.0 25 175-199 3-27 (173)
337 1uf9_A TT1252 protein; P-loop, 93.5 0.047 1.6E-06 52.5 4.0 26 172-197 6-31 (203)
338 4gp7_A Metallophosphoesterase; 93.5 0.038 1.3E-06 51.7 3.1 23 173-195 8-30 (171)
339 2z0h_A DTMP kinase, thymidylat 93.5 0.1 3.4E-06 49.8 6.3 24 176-199 2-25 (197)
340 2r6a_A DNAB helicase, replicat 93.4 0.96 3.3E-05 49.5 14.9 51 173-228 202-252 (454)
341 2plr_A DTMP kinase, probable t 93.4 0.049 1.7E-06 52.8 4.0 26 174-199 4-29 (213)
342 1znw_A Guanylate kinase, GMP k 93.4 0.042 1.4E-06 53.2 3.5 27 172-198 18-44 (207)
343 2qt1_A Nicotinamide riboside k 93.4 0.045 1.5E-06 52.9 3.7 26 173-198 20-45 (207)
344 1qf9_A UMP/CMP kinase, protein 93.4 0.048 1.6E-06 51.9 3.8 25 174-198 6-30 (194)
345 2j37_W Signal recognition part 93.3 0.48 1.6E-05 52.2 12.0 27 173-199 100-126 (504)
346 1htw_A HI0065; nucleotide-bind 93.3 0.05 1.7E-06 50.0 3.6 27 172-198 31-57 (158)
347 2vli_A Antibiotic resistance p 93.3 0.036 1.2E-06 52.3 2.7 26 174-199 5-30 (183)
348 1jjv_A Dephospho-COA kinase; P 93.3 0.043 1.5E-06 53.0 3.3 22 175-196 3-24 (206)
349 2p5t_B PEZT; postsegregational 93.3 0.064 2.2E-06 53.8 4.6 26 173-198 31-56 (253)
350 2pt5_A Shikimate kinase, SK; a 93.2 0.051 1.8E-06 50.4 3.6 24 176-199 2-25 (168)
351 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.053 1.8E-06 54.6 3.9 25 174-198 4-28 (260)
352 3aez_A Pantothenate kinase; tr 93.2 0.053 1.8E-06 56.1 4.0 28 172-199 88-115 (312)
353 1z6g_A Guanylate kinase; struc 93.2 0.04 1.4E-06 53.9 2.9 26 173-198 22-47 (218)
354 4a1f_A DNAB helicase, replicat 93.2 0.28 9.7E-06 51.0 9.5 53 173-231 45-97 (338)
355 2cdn_A Adenylate kinase; phosp 93.2 0.051 1.7E-06 52.3 3.6 27 173-199 19-45 (201)
356 1uj2_A Uridine-cytidine kinase 93.2 0.056 1.9E-06 54.2 4.0 27 173-199 21-47 (252)
357 4e22_A Cytidylate kinase; P-lo 93.1 0.051 1.7E-06 54.5 3.6 27 173-199 26-52 (252)
358 2yhs_A FTSY, cell division pro 93.1 0.38 1.3E-05 52.4 10.6 27 173-199 292-318 (503)
359 2pbr_A DTMP kinase, thymidylat 93.1 0.054 1.9E-06 51.6 3.6 24 176-199 2-25 (195)
360 1ls1_A Signal recognition part 93.1 0.28 9.6E-06 50.2 9.2 89 173-266 97-189 (295)
361 4a74_A DNA repair and recombin 93.0 0.17 5.7E-06 49.6 7.3 47 173-219 24-72 (231)
362 3tlx_A Adenylate kinase 2; str 93.0 0.092 3.1E-06 52.2 5.3 27 172-198 27-53 (243)
363 2wwf_A Thymidilate kinase, put 93.0 0.059 2E-06 52.2 3.9 26 174-199 10-35 (212)
364 1gtv_A TMK, thymidylate kinase 93.0 0.033 1.1E-06 54.2 2.0 25 175-199 1-25 (214)
365 2jeo_A Uridine-cytidine kinase 93.0 0.062 2.1E-06 53.5 4.0 27 172-198 23-49 (245)
366 2grj_A Dephospho-COA kinase; T 93.0 0.061 2.1E-06 51.2 3.7 26 173-198 11-36 (192)
367 2f1r_A Molybdopterin-guanine d 93.0 0.041 1.4E-06 51.3 2.4 26 174-199 2-27 (171)
368 1g41_A Heat shock protein HSLU 92.9 0.066 2.3E-06 57.8 4.4 47 153-199 15-75 (444)
369 1nn5_A Similar to deoxythymidy 92.9 0.063 2.2E-06 52.1 3.9 27 173-199 8-34 (215)
370 1s96_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 52.7 3.5 27 173-199 15-41 (219)
371 1tue_A Replication protein E1; 92.9 0.084 2.9E-06 50.2 4.5 38 162-199 45-83 (212)
372 1zd8_A GTP:AMP phosphotransfer 92.9 0.058 2E-06 53.0 3.6 25 174-198 7-31 (227)
373 3fb4_A Adenylate kinase; psych 92.8 0.06 2.1E-06 52.4 3.6 24 176-199 2-25 (216)
374 1aky_A Adenylate kinase; ATP:A 92.8 0.065 2.2E-06 52.4 3.9 26 174-199 4-29 (220)
375 3tqc_A Pantothenate kinase; bi 92.7 0.096 3.3E-06 54.1 5.0 27 173-199 91-117 (321)
376 1rj9_A FTSY, signal recognitio 92.7 0.073 2.5E-06 54.8 4.1 27 173-199 101-127 (304)
377 3dl0_A Adenylate kinase; phosp 92.6 0.066 2.2E-06 52.1 3.5 23 176-198 2-24 (216)
378 1zak_A Adenylate kinase; ATP:A 92.6 0.061 2.1E-06 52.7 3.3 26 174-199 5-30 (222)
379 2i3b_A HCR-ntpase, human cance 92.6 0.061 2.1E-06 51.1 3.1 25 175-199 2-26 (189)
380 3cmu_A Protein RECA, recombina 92.5 0.28 9.6E-06 62.5 9.7 87 173-268 382-472 (2050)
381 1np6_A Molybdopterin-guanine d 92.5 0.079 2.7E-06 49.5 3.8 27 173-199 5-31 (174)
382 2v54_A DTMP kinase, thymidylat 92.5 0.071 2.4E-06 51.2 3.6 25 174-198 4-28 (204)
383 2qgz_A Helicase loader, putati 92.5 0.098 3.3E-06 54.1 4.8 40 159-198 134-176 (308)
384 1zu4_A FTSY; GTPase, signal re 92.5 0.29 9.9E-06 50.7 8.4 27 173-199 104-130 (320)
385 1m7g_A Adenylylsulfate kinase; 92.5 0.077 2.6E-06 51.5 3.8 28 172-199 23-50 (211)
386 3l0o_A Transcription terminati 92.5 0.35 1.2E-05 50.6 8.8 53 163-217 163-216 (427)
387 2q6t_A DNAB replication FORK h 92.4 0.44 1.5E-05 52.0 10.2 53 173-230 199-251 (444)
388 2pez_A Bifunctional 3'-phospho 92.4 0.084 2.9E-06 49.6 3.8 27 173-199 4-30 (179)
389 3nwj_A ATSK2; P loop, shikimat 92.3 0.065 2.2E-06 53.4 3.1 26 174-199 48-73 (250)
390 3d3q_A TRNA delta(2)-isopenten 92.3 0.079 2.7E-06 55.0 3.8 25 175-199 8-32 (340)
391 3r20_A Cytidylate kinase; stru 92.3 0.079 2.7E-06 52.0 3.6 26 174-199 9-34 (233)
392 2onk_A Molybdate/tungstate ABC 92.2 0.079 2.7E-06 52.5 3.5 26 172-198 23-48 (240)
393 3lv8_A DTMP kinase, thymidylat 92.1 0.21 7E-06 49.2 6.4 52 174-228 27-78 (236)
394 2ehv_A Hypothetical protein PH 92.1 0.075 2.6E-06 53.0 3.3 24 173-196 29-52 (251)
395 4tmk_A Protein (thymidylate ki 92.1 0.21 7.2E-06 48.3 6.3 52 175-229 4-55 (213)
396 4eaq_A DTMP kinase, thymidylat 92.1 0.17 5.6E-06 49.8 5.7 27 173-199 25-51 (229)
397 3tif_A Uncharacterized ABC tra 92.1 0.067 2.3E-06 52.9 2.8 26 173-198 30-55 (235)
398 3lnc_A Guanylate kinase, GMP k 92.0 0.054 1.9E-06 53.4 2.1 26 173-198 26-52 (231)
399 3end_A Light-independent proto 92.0 0.17 5.7E-06 52.3 6.0 42 172-217 39-80 (307)
400 3b9q_A Chloroplast SRP recepto 92.0 0.099 3.4E-06 53.7 4.1 27 173-199 99-125 (302)
401 3rfe_A Platelet glycoprotein I 92.0 0.13 4.3E-06 45.5 4.2 37 559-596 32-68 (130)
402 1vht_A Dephospho-COA kinase; s 92.0 0.097 3.3E-06 51.0 3.8 23 174-196 4-26 (218)
403 2pcj_A ABC transporter, lipopr 91.9 0.07 2.4E-06 52.3 2.8 26 173-198 29-54 (224)
404 3b85_A Phosphate starvation-in 91.9 0.069 2.4E-06 51.6 2.6 25 173-197 21-45 (208)
405 3be4_A Adenylate kinase; malar 91.9 0.093 3.2E-06 51.1 3.6 25 175-199 6-30 (217)
406 1sq5_A Pantothenate kinase; P- 91.8 0.1 3.4E-06 54.1 3.9 27 172-198 78-104 (308)
407 3ake_A Cytidylate kinase; CMP 91.8 0.096 3.3E-06 50.5 3.6 24 175-198 3-26 (208)
408 3crm_A TRNA delta(2)-isopenten 91.8 0.095 3.2E-06 54.0 3.7 25 174-198 5-29 (323)
409 3cmw_A Protein RECA, recombina 91.8 0.28 9.5E-06 61.7 8.4 87 173-268 382-472 (1706)
410 1e4v_A Adenylate kinase; trans 91.8 0.097 3.3E-06 50.8 3.6 23 176-198 2-24 (214)
411 3exa_A TRNA delta(2)-isopenten 91.8 0.096 3.3E-06 53.4 3.6 26 174-199 3-28 (322)
412 2xb4_A Adenylate kinase; ATP-b 91.8 0.098 3.4E-06 51.2 3.6 23 176-198 2-24 (223)
413 1q57_A DNA primase/helicase; d 91.7 0.68 2.3E-05 51.5 10.9 53 173-230 241-293 (503)
414 4edh_A DTMP kinase, thymidylat 91.7 0.3 1E-05 47.3 6.9 52 174-229 6-57 (213)
415 4akg_A Glutathione S-transfera 91.7 1.3 4.6E-05 58.5 14.8 79 175-267 1268-1346(2695)
416 3k1j_A LON protease, ATP-depen 91.6 0.13 4.3E-06 58.9 4.9 45 153-199 41-85 (604)
417 1ak2_A Adenylate kinase isoenz 91.6 0.11 3.8E-06 51.2 3.9 26 174-199 16-41 (233)
418 2f6r_A COA synthase, bifunctio 91.6 0.1 3.5E-06 53.2 3.6 23 173-195 74-96 (281)
419 2cbz_A Multidrug resistance-as 91.5 0.083 2.8E-06 52.3 2.8 26 173-198 30-55 (237)
420 3gfo_A Cobalt import ATP-bindi 91.5 0.082 2.8E-06 53.5 2.8 26 173-198 33-58 (275)
421 3a8t_A Adenylate isopentenyltr 91.5 0.094 3.2E-06 54.2 3.2 26 173-198 39-64 (339)
422 1b0u_A Histidine permease; ABC 91.4 0.085 2.9E-06 53.1 2.8 26 173-198 31-56 (262)
423 2d2e_A SUFC protein; ABC-ATPas 91.4 0.1 3.5E-06 52.1 3.3 25 173-197 28-52 (250)
424 3p32_A Probable GTPase RV1496/ 91.3 0.37 1.3E-05 50.9 7.8 38 162-199 65-104 (355)
425 3vr4_D V-type sodium ATPase su 91.2 0.2 6.9E-06 53.7 5.5 99 165-267 141-258 (465)
426 2zu0_C Probable ATP-dependent 91.2 0.11 3.7E-06 52.5 3.3 25 173-197 45-69 (267)
427 4g1u_C Hemin import ATP-bindin 91.2 0.092 3.2E-06 52.9 2.8 26 173-198 36-61 (266)
428 1ji0_A ABC transporter; ATP bi 91.2 0.094 3.2E-06 52.0 2.8 26 173-198 31-56 (240)
429 2og2_A Putative signal recogni 91.2 0.14 4.6E-06 53.9 4.1 27 173-199 156-182 (359)
430 3foz_A TRNA delta(2)-isopenten 91.1 0.13 4.3E-06 52.5 3.7 27 173-199 9-35 (316)
431 1cr0_A DNA primase/helicase; R 91.1 0.3 1E-05 50.1 6.7 54 172-230 33-86 (296)
432 3ld9_A DTMP kinase, thymidylat 91.1 0.24 8.3E-06 48.2 5.6 56 172-229 19-74 (223)
433 1a7j_A Phosphoribulokinase; tr 91.1 0.08 2.7E-06 54.2 2.3 27 173-199 4-30 (290)
434 1g6h_A High-affinity branched- 91.1 0.096 3.3E-06 52.5 2.8 26 173-198 32-57 (257)
435 2olj_A Amino acid ABC transpor 91.1 0.096 3.3E-06 52.6 2.8 26 173-198 49-74 (263)
436 2pze_A Cystic fibrosis transme 91.1 0.097 3.3E-06 51.5 2.8 26 173-198 33-58 (229)
437 1oix_A RAS-related protein RAB 91.1 0.12 4.1E-06 49.1 3.4 25 174-198 29-53 (191)
438 1sgw_A Putative ABC transporte 91.1 0.082 2.8E-06 51.3 2.2 26 173-198 34-59 (214)
439 1mv5_A LMRA, multidrug resista 91.0 0.1 3.5E-06 51.8 2.9 26 173-198 27-52 (243)
440 2ff7_A Alpha-hemolysin translo 91.0 0.099 3.4E-06 52.0 2.8 26 173-198 34-59 (247)
441 2v9p_A Replication protein E1; 91.0 0.12 4.1E-06 52.9 3.4 27 172-198 124-150 (305)
442 3cmw_A Protein RECA, recombina 90.9 0.38 1.3E-05 60.5 8.4 86 173-267 1430-1519(1706)
443 2eyu_A Twitching motility prot 90.9 0.19 6.7E-06 50.3 4.8 110 172-297 23-135 (261)
444 2qe7_A ATP synthase subunit al 90.9 0.38 1.3E-05 52.2 7.2 97 165-267 152-264 (502)
445 1vpl_A ABC transporter, ATP-bi 90.8 0.11 3.6E-06 52.1 2.8 26 173-198 40-65 (256)
446 2ghi_A Transport protein; mult 90.7 0.11 3.7E-06 52.2 2.8 26 173-198 45-70 (260)
447 2ixe_A Antigen peptide transpo 90.7 0.11 3.7E-06 52.6 2.8 26 173-198 44-69 (271)
448 3oaa_A ATP synthase subunit al 90.7 0.48 1.6E-05 51.3 7.7 98 165-267 152-264 (513)
449 2qi9_C Vitamin B12 import ATP- 90.6 0.11 3.9E-06 51.6 2.8 26 173-198 25-50 (249)
450 3gqb_B V-type ATP synthase bet 90.6 0.17 5.9E-06 54.2 4.2 101 165-267 137-261 (464)
451 1ltq_A Polynucleotide kinase; 90.5 0.14 4.9E-06 52.6 3.6 23 175-197 3-25 (301)
452 2dyk_A GTP-binding protein; GT 90.5 0.16 5.4E-06 46.3 3.5 24 175-198 2-25 (161)
453 1yrb_A ATP(GTP)binding protein 90.5 0.17 5.8E-06 50.8 4.0 26 173-198 13-38 (262)
454 2yz2_A Putative ABC transporte 90.5 0.12 4.1E-06 52.1 2.8 26 173-198 32-57 (266)
455 2ihy_A ABC transporter, ATP-bi 90.5 0.12 4E-06 52.5 2.8 26 173-198 46-71 (279)
456 2f9l_A RAB11B, member RAS onco 90.4 0.14 4.8E-06 48.9 3.2 25 174-198 5-29 (199)
457 3sop_A Neuronal-specific septi 90.4 0.15 5E-06 51.5 3.4 24 176-199 4-27 (270)
458 2nq2_C Hypothetical ABC transp 90.4 0.12 4.1E-06 51.6 2.8 26 173-198 30-55 (253)
459 2qmh_A HPR kinase/phosphorylas 90.2 0.15 5E-06 48.3 2.9 26 173-198 33-58 (205)
460 3hjn_A DTMP kinase, thymidylat 90.1 0.42 1.4E-05 45.5 6.2 50 176-229 2-51 (197)
461 1nlf_A Regulatory protein REPA 90.0 0.15 5.2E-06 51.8 3.2 27 173-199 29-55 (279)
462 2r8r_A Sensor protein; KDPD, P 90.0 0.24 8.2E-06 47.9 4.4 25 175-199 7-31 (228)
463 3bgw_A DNAB-like replicative h 90.0 0.76 2.6E-05 50.0 8.9 52 173-230 196-247 (444)
464 1q3t_A Cytidylate kinase; nucl 90.0 0.19 6.6E-06 49.6 3.9 26 173-198 15-40 (236)
465 3zvl_A Bifunctional polynucleo 90.0 0.16 5.3E-06 55.0 3.4 27 172-198 256-282 (416)
466 2wji_A Ferrous iron transport 90.0 0.18 6.2E-06 46.4 3.5 23 175-197 4-26 (165)
467 3eph_A TRNA isopentenyltransfe 90.0 0.19 6.6E-06 53.2 4.0 26 174-199 2-27 (409)
468 3mfy_A V-type ATP synthase alp 89.9 1.3 4.4E-05 48.5 10.4 57 165-227 217-275 (588)
469 2zej_A Dardarin, leucine-rich 89.8 0.12 4.1E-06 48.7 2.1 22 176-197 4-25 (184)
470 3fvq_A Fe(3+) IONS import ATP- 89.8 0.17 5.7E-06 53.1 3.3 26 173-198 29-54 (359)
471 2c61_A A-type ATP synthase non 89.7 0.26 8.8E-06 53.2 4.7 101 165-267 142-259 (469)
472 2ocp_A DGK, deoxyguanosine kin 89.6 0.21 7.2E-06 49.5 3.9 26 174-199 2-27 (241)
473 1g8f_A Sulfate adenylyltransfe 89.6 0.33 1.1E-05 53.5 5.6 44 156-199 375-420 (511)
474 1svm_A Large T antigen; AAA+ f 89.6 0.2 6.9E-06 53.1 3.8 27 172-198 167-193 (377)
475 1cp2_A CP2, nitrogenase iron p 89.6 0.42 1.4E-05 48.1 6.1 38 175-216 2-39 (269)
476 1p9r_A General secretion pathw 89.6 0.32 1.1E-05 52.3 5.5 30 170-199 163-192 (418)
477 2pjz_A Hypothetical protein ST 89.6 0.15 5.2E-06 51.1 2.8 24 174-197 30-53 (263)
478 2vp4_A Deoxynucleoside kinase; 89.5 0.13 4.6E-06 50.5 2.3 25 173-197 19-43 (230)
479 2ce2_X GTPase HRAS; signaling 89.5 0.18 6.2E-06 46.0 3.0 23 176-198 5-27 (166)
480 2r9v_A ATP synthase subunit al 89.5 0.56 1.9E-05 50.9 7.2 97 165-267 165-277 (515)
481 3nh6_A ATP-binding cassette SU 89.5 0.14 4.8E-06 52.5 2.4 27 172-198 78-104 (306)
482 3v9p_A DTMP kinase, thymidylat 89.4 0.3 1E-05 47.6 4.7 27 173-199 24-50 (227)
483 3f9v_A Minichromosome maintena 89.3 0.12 4.1E-06 58.7 1.9 45 154-198 296-351 (595)
484 3tui_C Methionine import ATP-b 89.3 0.19 6.4E-06 52.8 3.3 27 172-198 52-78 (366)
485 3iqw_A Tail-anchored protein t 89.3 0.47 1.6E-05 49.4 6.3 47 169-219 11-57 (334)
486 2bbs_A Cystic fibrosis transme 89.1 0.17 5.9E-06 51.6 2.8 26 173-198 63-88 (290)
487 1z2a_A RAS-related protein RAB 89.1 0.21 7.2E-06 45.8 3.2 25 174-198 5-29 (168)
488 1u0j_A DNA replication protein 89.1 0.39 1.3E-05 47.8 5.3 36 163-198 91-128 (267)
489 1z47_A CYSA, putative ABC-tran 89.0 0.2 7E-06 52.4 3.3 26 173-198 40-65 (355)
490 4gzl_A RAS-related C3 botulinu 89.0 0.23 7.9E-06 47.7 3.5 38 161-198 17-54 (204)
491 2wjg_A FEOB, ferrous iron tran 89.0 0.21 7.2E-06 47.0 3.1 24 174-197 7-30 (188)
492 1nij_A Hypothetical protein YJ 88.9 0.2 6.8E-06 52.0 3.1 26 173-198 3-28 (318)
493 3kta_A Chromosome segregation 88.9 0.22 7.7E-06 46.7 3.3 24 175-198 27-50 (182)
494 3upu_A ATP-dependent DNA helic 88.8 0.43 1.5E-05 52.4 6.0 42 157-199 29-70 (459)
495 3rlf_A Maltose/maltodextrin im 88.8 0.21 7.3E-06 52.7 3.3 26 173-198 28-53 (381)
496 1tq4_A IIGP1, interferon-induc 88.8 0.27 9.4E-06 52.6 4.2 25 173-197 68-92 (413)
497 3con_A GTPase NRAS; structural 88.8 0.21 7.2E-06 47.1 3.0 24 175-198 22-45 (190)
498 3vr4_A V-type sodium ATPase ca 88.8 1.6 5.4E-05 48.1 10.1 56 165-226 222-279 (600)
499 1zj6_A ADP-ribosylation factor 88.7 0.36 1.2E-05 45.4 4.6 34 163-197 6-39 (187)
500 2yyz_A Sugar ABC transporter, 88.6 0.22 7.7E-06 52.3 3.3 26 173-198 28-53 (359)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-47 Score=437.75 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=251.3
Q ss_pred ccchHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHH--hhhhccCCCCCEEEEEEeCCCC--CHHHHHHHHH
Q 003317 156 VGLESTLDKVWSCLGEE---NVGIIGLYGMGGVGKTTLLTQINN--KFLDSRKDDFDVVIWVVVSKDL--KIERIQDDIW 228 (831)
Q Consensus 156 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~ 228 (831)
|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+ ++.+|+.++||++++.+ +...+++.|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQL--IGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSST--BTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHH--HhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 69999999999999653 689999999999999999999998 444 78999999999999985 8999999999
Q ss_pred HHhCCCCC-----CCCCCCHHHHHHHHHHHHcCC-cEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhhcc
Q 003317 229 KKIGLCDN-----SWRSKSLEDKAVDIFRVLSKK-KFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGAMK 302 (831)
Q Consensus 229 ~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 302 (831)
.+++.... .....+.+.+...+++.++++ ||||||||||+..++ .+ + ..+||+||||||+..++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcC
Confidence 99986521 112335677889999999996 999999999997754 11 1 127999999999999998776
Q ss_pred -CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHhccc
Q 003317 303 -AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLRRSA 381 (831)
Q Consensus 303 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 381 (831)
....|++++|+.++||+||.++++... .++++.+++++|+++|+|+||||+++|+.|+.+ + |..+ +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 446799999999999999999987653 246788899999999999999999999999764 2 5443 3343321
Q ss_pred CCCCCchhhhhHHhhccCCCCchhHHHHHH-----------HHhcCCCCccccHHHHHHHHHhc--CCCCCcc-hhhHHH
Q 003317 382 SEFPGMDEVYPRLKFSYDSLPGEKIRSCFL-----------YCCLFPEDYKIHKMSLIDYWISE--KILDNND-RSRAIN 447 (831)
Q Consensus 382 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~ae--g~i~~~~-~~~~~~ 447 (831)
... ...++..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +...++
T Consensus 356 ~~~-~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 356 ESR-GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHH-CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred hcc-cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 111 123789999999999998 8999999 999999999999 8899999 9998766 355666
Q ss_pred HHHHHHHHHHhccccccc---CCCeEEeCHHHHHHHHHHHhhh
Q 003317 448 EGYYIIGVVLHSCLLEEA---GNDWVKMHDVIRDMALWIATEI 487 (831)
Q Consensus 448 ~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~~~~ 487 (831)
.++ ||++|+++||++.. +..+|+|||+||+||++++.++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 666 99999999999976 3458999999999999988764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.5e-40 Score=376.74 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=230.6
Q ss_pred CcccchHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHh
Q 003317 154 PTVGLESTLDKVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDV-VIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+ ++.+|+. ++|+++++.++...++..|+..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~r--V~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCH--HHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhH--HHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 349999999999999976 5689999999999999999999999865 6688986 99999999999988888888754
Q ss_pred CCCCC----CCC-----CCCHHHHHHHHHHHH---cCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHh
Q 003317 232 GLCDN----SWR-----SKSLEDKAVDIFRVL---SKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCG 299 (831)
Q Consensus 232 ~~~~~----~~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 299 (831)
+.... ... ..+.++....+++.+ .+||+||||||||+...|+.+ .+||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence 32110 000 112345566777766 679999999999998888765 26899999999999886
Q ss_pred hccCCceEEcC------CCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCC-ChhHHHH
Q 003317 300 AMKAHEYFKVE------CLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKK-QPEDWKY 372 (831)
Q Consensus 300 ~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~-~~~~w~~ 372 (831)
.+.....|.++ +|+.+|||+||.+.+... ..++..+| |+|+||||+++|+.|+.+. +..+|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55443456666 999999999999984321 12334444 9999999999999999863 6778875
Q ss_pred HHHHHhcccCCCCCchhhhhHHhhccCCCCchhH-HHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 003317 373 AIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKI-RSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYY 451 (831)
Q Consensus 373 ~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~ 451 (831)
. +...+..+|.+||+.||+ +. |+||+|||+||+++.|+++.++.+|+++| ++.++.
T Consensus 350 ~------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~ 406 (1221)
T 1vt4_I 350 V------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMV 406 (1221)
T ss_dssp C------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHH
T ss_pred C------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHH
Confidence 2 124899999999999999 78 99999999999999999999999999987 135778
Q ss_pred HHHHHHhccccccc-CCCeEEeCHHHHHHH
Q 003317 452 IIGVVLHSCLLEEA-GNDWVKMHDVIRDMA 480 (831)
Q Consensus 452 ~~~~L~~~~ll~~~-~~~~~~mHdlv~d~a 480 (831)
++++|+++||++.. +...|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999999986 457899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-37 Score=395.61 Aligned_cols=312 Identities=21% Similarity=0.286 Sum_probs=255.8
Q ss_pred CCCCCcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCC--HHHHH
Q 003317 150 RPIEPTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLK--IERIQ 224 (831)
Q Consensus 150 ~~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~--~~~~~ 224 (831)
.+...||||++++++|.++|.. ++.++|+|+||||+||||||+++|++.+ .+..+| +.++|+++++..+ ....+
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHS-LLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHH-HHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChh-HHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3446799999999999999953 5789999999999999999999999864 123444 6888999998644 34557
Q ss_pred HHHHHHhCCCCC--CCCCCCHHHHHHHHHHHHcCC--cEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhh
Q 003317 225 DDIWKKIGLCDN--SWRSKSLEDKAVDIFRVLSKK--KFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGA 300 (831)
Q Consensus 225 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 300 (831)
..++..+..... .....+.++....++..+.++ |+||||||||+...|..+ .+||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 778887765432 123456788899999999877 999999999998777654 568999999999999854
Q ss_pred -ccCCceEEcCC-CChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHHh
Q 003317 301 -MKAHEYFKVEC-LAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVLR 378 (831)
Q Consensus 301 -~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l~ 378 (831)
+.....+.+.+ |+++||++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|..+++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45667899996 99999999999988543 245567799999999999999999999998754 47999999887
Q ss_pred cccCCC------CCchhhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 003317 379 RSASEF------PGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYYI 452 (831)
Q Consensus 379 ~~~~~~------~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~~ 452 (831)
...... ...+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ .+.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 654321 1223799999999999999 899999999999999999999999999654 3667889
Q ss_pred HHHHHhcccccccC---CCeEEeCHHHHHHHHHHHhhh
Q 003317 453 IGVVLHSCLLEEAG---NDWVKMHDVIRDMALWIATEI 487 (831)
Q Consensus 453 ~~~L~~~~ll~~~~---~~~~~mHdlv~d~a~~~~~~~ 487 (831)
+++|+++||++... ..+|+|||+||++|+..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999998762 236999999999999987664
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=341.57 Aligned_cols=304 Identities=20% Similarity=0.295 Sum_probs=239.5
Q ss_pred CCCcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcc-CCCC-CEEEEEEeCCCCCHHHHHHHH
Q 003317 152 IEPTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSR-KDDF-DVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~i 227 (831)
+..+|||+.++++|.++|.. ++.++|+|+||||+||||||++++++.. + ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHS--LLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHH--HHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchh--HHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 36799999999999999974 4689999999999999999999998763 3 4778 58999999876 344444443
Q ss_pred ---HHHhCCCCC--CCCCCCHHHHHHHHHHHHcC--CcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHhh
Q 003317 228 ---WKKIGLCDN--SWRSKSLEDKAVDIFRVLSK--KKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCGA 300 (831)
Q Consensus 228 ---~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 300 (831)
+..++.... .....+.+.....++..+.+ +++||||||+|+...+..+ .+|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 445542111 12345677788888888876 7999999999987655432 468999999999988765
Q ss_pred ccCCceEEc---CCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChhHHHHHHHHH
Q 003317 301 MKAHEYFKV---ECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMACKKQPEDWKYAIQVL 377 (831)
Q Consensus 301 ~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~l~~l 377 (831)
+. ...+++ ++|+.+|+++||...++... +...+.+.+|+++|+|+||||..+|+.++... ..|..+++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334544 58999999999999987532 12245789999999999999999999998743 4799988888
Q ss_pred hcccCC-C-----CCchhhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 003317 378 RRSASE-F-----PGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRAINEGYY 451 (831)
Q Consensus 378 ~~~~~~-~-----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~~~~~~ 451 (831)
...... . .....+..++..||+.||+ +.|.||++||+||+++.|+...+...|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 765322 1 1223789999999999999 899999999999999999999999999543 245677
Q ss_pred HHHHHHhccccccc---CCCeEEeCHHHHHHHHHHH
Q 003317 452 IIGVVLHSCLLEEA---GNDWVKMHDVIRDMALWIA 484 (831)
Q Consensus 452 ~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~ 484 (831)
++++|+++||++.. ....|+||++||++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 89999999999864 2347999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.4e-19 Score=188.95 Aligned_cols=216 Identities=20% Similarity=0.316 Sum_probs=143.3
Q ss_pred cceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 515 KGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
.+++.|++++|.+..+|.. .++++|++|++++ +..+|..++++++|++|+|++| .+..+|.. ++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEECC
Confidence 6788889998888877765 5677777777776 5567777777777777777777 56677764 7777777777777
Q ss_pred cccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceee
Q 003317 592 NCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLH 671 (831)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 671 (831)
+|..... .+..+.. ..+. ..+.++++|++|+
T Consensus 159 ~n~~~~~-------~p~~~~~--------------------------------~~~~----------~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 159 ACPELTE-------LPEPLAS--------------------------------TDAS----------GEHQGLVNLQSLR 189 (328)
T ss_dssp EETTCCC-------CCSCSEE--------------------------------EC-C----------CCEEESTTCCEEE
T ss_pred CCCCccc-------cChhHhh--------------------------------ccch----------hhhccCCCCCEEE
Confidence 7654430 1111110 0000 0234566777777
Q ss_pred ecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCCCCCCcc
Q 003317 672 MQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKL 750 (831)
Q Consensus 672 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L 750 (831)
+++|....++ ..+. .+++|+.|+|++|. +..+| .++.+++|+.|++++|+....++. .++.+++|
T Consensus 190 L~~n~l~~lp-~~l~----~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L 255 (328)
T 4fcg_A 190 LEWTGIRSLP-ASIA----NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPL 255 (328)
T ss_dssp EEEECCCCCC-GGGG----GCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCC
T ss_pred CcCCCcCcch-Hhhc----CCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCC
Confidence 7777555432 2333 36777888887774 44443 467778888888887776666655 56777788
Q ss_pred ceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc
Q 003317 751 EYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA 795 (831)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~ 795 (831)
++|+|++|+....+|.....+++|++|++++|+.+..+|.....+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 888888877777777666777888888888888888888766553
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=7.4e-19 Score=193.28 Aligned_cols=259 Identities=17% Similarity=0.189 Sum_probs=159.9
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
+..++++++|++++|.+..++.. ..+++|++|++++ +..+| ..++++++|++|++++| .+..+|...++++++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence 45567788888888887777653 6788888888876 55554 45778888888888888 6778887655788888
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccC-------------
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEH------------- 652 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~------------- 652 (831)
++|++++|.+..+ .+..+.++++|+.|+++.+.+..+. + ...++|+.|+++++.-
T Consensus 144 ~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~-~----~~l~~L~~L~l~~n~l~~~~~~~~L~~L~ 211 (390)
T 3o6n_A 144 TTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLTHVD-L----SLIPSLFHANVSYNLLSTLAIPIAVEELD 211 (390)
T ss_dssp CEEECCSSCCCBC-------CTTTTSSCTTCCEEECCSSCCSBCC-G----GGCTTCSEEECCSSCCSEEECCSSCSEEE
T ss_pred cEEECCCCccCcc-------ChhhccCCCCCCEEECCCCcCCccc-c----ccccccceeecccccccccCCCCcceEEE
Confidence 8888888877652 2344667777777777765543221 1 1112344444443321
Q ss_pred -----CceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEec
Q 003317 653 -----SNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVST 725 (831)
Q Consensus 653 -----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~ 725 (831)
...++ ....++|+.|++++|..... .++. .+++|+.|++++|. +..+ | .+..+++|+.|++++
T Consensus 212 l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~----~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 212 ASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLL----NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGG----GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS
T ss_pred CCCCeeeecc---ccccccccEEECCCCCCccc--HHHc----CCCCccEEECCCCc-CCCcChhHccccccCCEEECCC
Confidence 11111 11124566666665544432 2222 36667777776663 3332 2 355667777777776
Q ss_pred ccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccccceEEec
Q 003317 726 CANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSAKDRKIVIRA 804 (831)
Q Consensus 726 c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~~l~~~~i~~ 804 (831)
| .+..++. ....+|+|+.|+++++ .+..++.....+++|++|++++| .++.+|..... +++.+.+.+
T Consensus 282 n-~l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-~L~~L~l~~ 348 (390)
T 3o6n_A 282 N-RLVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHH-TLKNLTLSH 348 (390)
T ss_dssp S-CCCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTC-CCSEEECCS
T ss_pred C-cCcccCc--------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeCchhhc-cCCEEEcCC
Confidence 4 3444443 4456788888888886 66666655666788888888876 47777754333 566666663
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=197.72 Aligned_cols=281 Identities=19% Similarity=0.183 Sum_probs=174.9
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHT 568 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~ 568 (831)
.+...+..+..+| . .-..++++|+|++|.+..+++. ..+++|++|+|++ +..+ |..+++|++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip---~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAVP---E-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSCC---S-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcCC---C-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3444455555555 1 1235788888888888877543 7788888888886 5554 667788888888888888
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHH--Hhh------------
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALER--FLS------------ 634 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~--l~~------------ 634 (831)
.+..+|.+.+.++++|++|++++|.+..+ .+..+.++++|+.|++..+.+..+.. +..
T Consensus 91 -~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 91 -RLKLIPLGVFTGLSNLTKLDISENKIVIL-------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp -CCCSCCTTSSTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred -cCCccCcccccCCCCCCEEECCCCccccC-------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 67788876677888888888888776652 22334455555555554433221100 000
Q ss_pred --------cccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCC
Q 003317 635 --------FHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSK 705 (831)
Q Consensus 635 --------~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~ 705 (831)
.....++|+.|+++++. ........+..+++|++|++++|.... ++...+ ...+|+.|+|++| .
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n-~ 235 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-----YGLNLTSLSITHC-N 235 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-----TTCCCSEEEEESS-C
T ss_pred cCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc-----cCccccEEECcCC-c
Confidence 00112245555554443 222222245556666666666665544 222222 1347888888877 5
Q ss_pred CCCCC--cccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccC-CCCCCCCCccEEeecCC
Q 003317 706 LRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIY-WSPLPFPQLMEIRVNGC 782 (831)
Q Consensus 706 l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~-~~~~~~p~L~~L~l~~C 782 (831)
++.+| .+..+++|+.|+|+++. +..++.. .+..+++|+.|+|+++ ++..+. .....+++|++|++++|
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred ccccCHHHhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence 66666 36788899999998854 5555432 5678899999999986 555553 34567899999999986
Q ss_pred CCCCCCCCCCc-c-ccccceEEe
Q 003317 783 PILQKLPLDSS-S-AKDRKIVIR 803 (831)
Q Consensus 783 ~~L~~lp~~~~-~-~~l~~~~i~ 803 (831)
+++.+|.... . .+|+.+.+.
T Consensus 307 -~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 307 -QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp -CCSCCCGGGBSCGGGCCEEECC
T ss_pred -cCceeCHhHcCCCcccCEEEcc
Confidence 7888886432 2 256666554
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.1e-18 Score=188.84 Aligned_cols=258 Identities=17% Similarity=0.200 Sum_probs=139.2
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
.+..++++++|++++|.+..++....+++|++|++++ +..+| .++.+++|++|++++| .+..+|. +.++++|++
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYS 136 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCE
T ss_pred hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh--hccCCceeE
Confidence 4556667777777777777666666777777777776 44444 4667777777777776 4666665 666777777
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceee----------
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLD---------- 657 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~---------- 657 (831)
|++++|.... .+..+.++++|+.|++..+.+..+..+. ..++|+.|+++++.- ...+
T Consensus 137 L~l~~n~~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~ 203 (347)
T 4fmz_A 137 LNLGANHNLS--------DLSPLSNMTGLNYLTVTESKVKDVTPIA----NLTDLYSLSLNYNQI-EDISPLASLTSLHY 203 (347)
T ss_dssp EECTTCTTCC--------CCGGGTTCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECTTSCC-CCCGGGGGCTTCCE
T ss_pred EECCCCCCcc--------cccchhhCCCCcEEEecCCCcCCchhhc----cCCCCCEEEccCCcc-cccccccCCCccce
Confidence 7776664433 2223455555555555544332222111 122444454444431 1111
Q ss_pred ----------eccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEeccc
Q 003317 658 ----------VLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCA 727 (831)
Q Consensus 658 ----------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 727 (831)
...+..+++|++|++++|....++. +. .+++|+.|++++| .+..++.+..+++|+.|++++|.
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~----~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LA----NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hh----cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc
Confidence 0013445556666666554443222 21 3566666666665 44555556666666666666643
Q ss_pred CccccccCCccccccCCCCCCccceecccccccccccC-CCCCCCCCccEEeecCCCCCCCCCCCCccccccceEEe
Q 003317 728 NMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIY-WSPLPFPQLMEIRVNGCPILQKLPLDSSSAKDRKIVIR 803 (831)
Q Consensus 728 ~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~-~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~~l~~~~i~ 803 (831)
+..++ .+..+++|+.|++++|. +.... .....+++|++|++++|+ ++.+|......+++.+.+.
T Consensus 277 -l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 277 -ISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFA 341 (347)
T ss_dssp -CCCCG---------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSS
T ss_pred -cCCCh---------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehh
Confidence 33331 34566677777777653 33222 223456777777777765 5554432122245555554
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.3e-18 Score=202.14 Aligned_cols=260 Identities=17% Similarity=0.187 Sum_probs=165.6
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
+..++++++|+|++|.+..+++. ..+++|++|+|++ +..+|. .++++++|++|+|++| .+..+|...++++++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 45567888888888888877653 7888888888887 555554 4688888888888888 6788887756888888
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccC-------------
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEH------------- 652 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~------------- 652 (831)
++|++++|.+..+ .+..+.++++|+.|+++.+.+..+. + ...++|+.|+++++.-
T Consensus 150 ~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~-~----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ 217 (597)
T 3oja_B 150 TTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLTHVD-L----SLIPSLFHANVSYNLLSTLAIPIAVEELD 217 (597)
T ss_dssp CEEECCSSCCCBC-------CTTTTTTCTTCCEEECTTSCCSBCC-G----GGCTTCSEEECCSSCCSEEECCTTCSEEE
T ss_pred CEEEeeCCcCCCC-------ChhhhhcCCcCcEEECcCCCCCCcC-h----hhhhhhhhhhcccCccccccCCchhheee
Confidence 8888888877652 3345667777777777765543321 0 1122444555444321
Q ss_pred -----CceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEec
Q 003317 653 -----SNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVST 725 (831)
Q Consensus 653 -----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~ 725 (831)
...++. ...++|+.|++++|..... .++. .+++|+.|+|++|. +..+ | .++.+++|+.|+|++
T Consensus 218 ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~----~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 218 ASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL----NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGG----GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTT
T ss_pred ccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhc----cCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCC
Confidence 111110 1124566666666554431 2222 36777777777763 3332 2 466677777777777
Q ss_pred ccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccccceEEecc
Q 003317 726 CANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSAKDRKIVIRAK 805 (831)
Q Consensus 726 c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~~l~~~~i~~~ 805 (831)
|. +..++. ....+|+|+.|+|++| .+..+|.....+++|++|++++| .+..+|..... +|+.+.+.++
T Consensus 288 N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~L~~L~l~~N 355 (597)
T 3oja_B 288 NR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHH-TLKNLTLSHN 355 (597)
T ss_dssp SC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTC-CCSEEECCSS
T ss_pred CC-CCCCCc--------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcChhhcC-CCCEEEeeCC
Confidence 43 454543 4556788888888885 56667666667888888888886 46777754433 5677776643
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=2.7e-18 Score=185.59 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=137.1
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
....++++++|+++++.+..++....+++|++|++++ +..+|. ++.+++|++|++++| .+..+|. +.++++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH--HcCCCcCCE
Confidence 4556789999999999999998888999999999998 777777 999999999999999 7888874 999999999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+..+ ..+.++++|+.|++..+.... .+..+ ...++|+.|+++++.- .... .+..+++|
T Consensus 115 L~l~~n~i~~~---------~~~~~l~~L~~L~l~~n~~~~--~~~~~-~~l~~L~~L~l~~~~~-~~~~--~~~~l~~L 179 (347)
T 4fmz_A 115 LYLNEDNISDI---------SPLANLTKMYSLNLGANHNLS--DLSPL-SNMTGLNYLTVTESKV-KDVT--PIANLTDL 179 (347)
T ss_dssp EECTTSCCCCC---------GGGTTCTTCCEEECTTCTTCC--CCGGG-TTCTTCCEEECCSSCC-CCCG--GGGGCTTC
T ss_pred EECcCCcccCc---------hhhccCCceeEEECCCCCCcc--cccch-hhCCCCcEEEecCCCc-CCch--hhccCCCC
Confidence 99999988762 227788899999887653211 11112 2245799999988763 2222 36678899
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecc
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTC 726 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 726 (831)
++|++++|....++. +. .+++|+.|++++| .+..++.+..+++|+.|++++|
T Consensus 180 ~~L~l~~n~l~~~~~--~~----~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LA----SLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp SEEECTTSCCCCCGG--GG----GCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEEccCCccccccc--cc----CCCccceeecccC-CCCCCchhhcCCcCCEEEccCC
Confidence 999999887655322 21 2455555555554 3333333445555555555553
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1e-17 Score=188.63 Aligned_cols=268 Identities=17% Similarity=0.209 Sum_probs=155.6
Q ss_pred cCCCceeeccccccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCC
Q 003317 498 AGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIP 575 (831)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp 575 (831)
.+.....+| .+..+.++++|++++|.+..+++...+++|++|++++ +..+|. ++++++|++|++++| .+..+|
T Consensus 54 ~~~~i~~l~---~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 54 DRLGIKSID---GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp CSSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred CCCCCccCc---chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCCh
Confidence 333444455 5667788889999988888887778888899998887 666666 888889999999888 678887
Q ss_pred hhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCce
Q 003317 576 SPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNW 655 (831)
Q Consensus 576 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~ 655 (831)
. +.++++|++|++++|.+..+ ..+.++++|+.|++.. ....+.. + .-.++|+.|+++++. ...
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~-~~~~~~~---~-~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISDI---------SALSGLTSLQQLSFGN-QVTDLKP---L-ANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECCC---------GGGTTCTTCSEEEEEE-SCCCCGG---G-TTCTTCCEEECCSSC-CCC
T ss_pred H--HcCCCCCCEEECCCCccCCC---------hhhccCCcccEeecCC-cccCchh---h-ccCCCCCEEECcCCc-CCC
Confidence 5 78888999999988876652 2355555555555541 1111111 1 112355666665544 222
Q ss_pred eeeccccCCCCcceeeecCCCCCceeeccccc------------------CCCCCCCccEEEEEcCCCCCCCCcccccCC
Q 003317 656 LDVLSLGELKNLHTLHMQFPFLDDLKFGCVRV------------------GTHAFHSLHTVRIYYCSKLRDLTWLALAPN 717 (831)
Q Consensus 656 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~ 717 (831)
++ .+..+++|++|++++|......+ +.. ....+++|+.|++++| .+..++.+..+++
T Consensus 192 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 192 IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAPLSGLTK 266 (466)
T ss_dssp CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGTTCTT
T ss_pred Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchhhhcCCC
Confidence 21 34445555555555554433211 110 0012444444444444 2333333444445
Q ss_pred CceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccccc
Q 003317 718 VRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSAKD 797 (831)
Q Consensus 718 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~~l 797 (831)
|+.|++++|. +..++ .+..+++|+.|+++++ .+..++. ...+++|++|++++| ++..++......+|
T Consensus 267 L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 333 (466)
T 1o6v_A 267 LTELKLGANQ-ISNIS---------PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKL 333 (466)
T ss_dssp CSEEECCSSC-CCCCG---------GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTC
T ss_pred CCEEECCCCc-cCccc---------cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccC
Confidence 5555554432 22221 2456677777777775 4554442 456788888888877 45554432222267
Q ss_pred cceEEecc
Q 003317 798 RKIVIRAK 805 (831)
Q Consensus 798 ~~~~i~~~ 805 (831)
+.+.+.++
T Consensus 334 ~~L~l~~n 341 (466)
T 1o6v_A 334 QRLFFYNN 341 (466)
T ss_dssp CEEECCSS
T ss_pred CEeECCCC
Confidence 77777644
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=5.6e-19 Score=187.67 Aligned_cols=250 Identities=17% Similarity=0.171 Sum_probs=189.1
Q ss_pred cceeEEEeccccccc---cCCC-CCCCCcccccccC----cCccchhhhcCCcccEEeccCCCCCC-CCChhhhcCCccC
Q 003317 515 KGVRKISLMQNQIRN---LPFT-PICPDLQTLFLKG----INELPRELKALVNLKYLNLDHTTFLH-PIPSPLISSFSML 585 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~---lp~~-~~~~~Lr~L~L~~----~~~lp~~i~~L~~Lr~L~L~~~~~l~-~lp~~~i~~L~~L 585 (831)
.++++|+++++.+.. +|.. .++++|++|++++ ...+|..++++++|++|++++| .+. .+|.. ++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCC
Confidence 579999999999974 6655 8899999999983 4478999999999999999999 565 78875 9999999
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh-HHHHHhhcccccccccceeeccccCCceeeeccccCC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR-ALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGEL 664 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l 664 (831)
++|++++|.+.. ..+..+.++++|+.|++..+.+. .+. ..+..+...|+.|+++++.-....+ ..+..+
T Consensus 128 ~~L~Ls~N~l~~-------~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l 197 (313)
T 1ogq_A 128 VTLDFSYNALSG-------TLPPSISSLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIP-PTFANL 197 (313)
T ss_dssp CEEECCSSEEES-------CCCGGGGGCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECC-GGGGGC
T ss_pred CEEeCCCCccCC-------cCChHHhcCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCC-hHHhCC
Confidence 999999998774 25567788899999998876654 111 1122233478999998876322222 245566
Q ss_pred CCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCC
Q 003317 665 KNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNL 744 (831)
Q Consensus 665 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~ 744 (831)
+ |+.|++++|......+..+. .+++|+.|+|++|.....++.+..+++|+.|++++|.....++. .+
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--------~l 264 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFG----SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--------GL 264 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCC----TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--------GG
T ss_pred c-ccEEECcCCcccCcCCHHHh----cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--------HH
Confidence 5 99999999866554444443 48999999999986544566778899999999999764435554 67
Q ss_pred CCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 003317 745 DPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPL 790 (831)
Q Consensus 745 ~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~ 790 (831)
..+++|+.|+++++.--..+|.. ..+++|+.|++.+++.+...|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 78999999999997444456644 7799999999999988877664
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.2e-17 Score=187.78 Aligned_cols=282 Identities=18% Similarity=0.167 Sum_probs=166.7
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cC-cc-chhhhcCCcccEEeccC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--IN-EL-PRELKALVNLKYLNLDH 567 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~-~l-p~~i~~L~~Lr~L~L~~ 567 (831)
.+...+.+...+| . -.+++++|++++|.+..+++. ..+++|++|++++ +. .+ |..++++++|++|+|++
T Consensus 14 ~~~c~~~~l~~lp---~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVP---E--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCC---C--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCC---C--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3444555555666 2 236788888888888876443 7888888888887 22 34 45678888888888888
Q ss_pred CCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhh--hcCCcCCCceeEeecchhHHHHHhhcccccccccce
Q 003317 568 TTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDE--LVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSL 645 (831)
Q Consensus 568 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L 645 (831)
| .+..+++..++++++|++|++++|.+.. ..+.. +.++++|+.|+++.+.+...... ......++|+.|
T Consensus 89 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L 159 (455)
T 3v47_A 89 N-QFLQLETGAFNGLANLEVLTLTQCNLDG-------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRRFHVL 159 (455)
T ss_dssp C-TTCEECTTTTTTCTTCCEEECTTSCCBT-------HHHHSSTTTTCTTCCEEECCSSBCCSCCCC-GGGGGCTTCCEE
T ss_pred C-ccCccChhhccCcccCCEEeCCCCCCCc-------cccCcccccCcccCCEEECCCCccCccCcc-cccCCCCcccEE
Confidence 8 5666543357888888888888887654 01111 44555555555554433221000 000011233333
Q ss_pred eeccccCCceeee---------------------------------ccccCC----------------------------
Q 003317 646 YLNVWEHSNWLDV---------------------------------LSLGEL---------------------------- 664 (831)
Q Consensus 646 ~l~~~~~~~~~~~---------------------------------~~l~~l---------------------------- 664 (831)
+++++.-....+. ..+..+
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 3333321000000 000011
Q ss_pred -----------------------------------CCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC
Q 003317 665 -----------------------------------KNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL 709 (831)
Q Consensus 665 -----------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 709 (831)
++|+.|++++|......+.++. .+++|+.|+|++|. +..+
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~-l~~~ 314 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQNE-INKI 314 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEECTTSC-CCEE
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc----cCCCCCEEECCCCc-cccc
Confidence 3455555555544433333332 46788888887774 4433
Q ss_pred -C-cccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccccccccc-CCCCCCCCCccEEeecCCCCCC
Q 003317 710 -T-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSI-YWSPLPFPQLMEIRVNGCPILQ 786 (831)
Q Consensus 710 -~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~p~L~~L~l~~C~~L~ 786 (831)
+ .+..+++|+.|++++|. +..++.. .+..+++|+.|+++++ .+..+ +.....+++|++|++++| +++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNF-LGSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCEECGG-------GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred ChhHhcCcccCCEEECCCCc-cCCcChh-------HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence 3 46778888888888854 4444321 5678899999999996 55655 445677999999999885 788
Q ss_pred CCCCCC-cc-ccccceEEec
Q 003317 787 KLPLDS-SS-AKDRKIVIRA 804 (831)
Q Consensus 787 ~lp~~~-~~-~~l~~~~i~~ 804 (831)
.+|... .. .+|+.+.+.+
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCS
T ss_pred cCCHhHhccCCcccEEEccC
Confidence 888754 22 2677777763
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.7e-17 Score=197.30 Aligned_cols=275 Identities=15% Similarity=0.128 Sum_probs=153.5
Q ss_pred cccccccceeEEEeccccccc------------------cCCC-C--CCCCcccccccC---cCccchhhhcCCcccEEe
Q 003317 509 QGIERWKGVRKISLMQNQIRN------------------LPFT-P--ICPDLQTLFLKG---INELPRELKALVNLKYLN 564 (831)
Q Consensus 509 ~~~~~~~~lr~L~l~~~~i~~------------------lp~~-~--~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~ 564 (831)
..+..++++++|+|++|.+.. +|.. . ++++|++|+|++ ...+|..+++|++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 356778888889998888887 7776 4 788888888886 566788888888888888
Q ss_pred ccCCCCCC--CCChhhhcCCc-------cCcEeeeccccCCCccccccccchh--hhcCCcCCCceeEeecchhHHHHHh
Q 003317 565 LDHTTFLH--PIPSPLISSFS-------MLLVLRMFNCKSSSMANVVREVLID--ELVQLDHLNELSMSLHSIRALERFL 633 (831)
Q Consensus 565 L~~~~~l~--~lp~~~i~~L~-------~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~~L~~L~i~~~~~~~l~~l~ 633 (831)
|++|..+. .+|.. +++++ +|++|++++|.+.. .+. .+.++++|+.|+++.+.+.. ++
T Consensus 522 Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~--------ip~~~~l~~L~~L~~L~Ls~N~l~~---lp 589 (876)
T 4ecn_A 522 IACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEE--------FPASASLQKMVKLGLLDCVHNKVRH---LE 589 (876)
T ss_dssp CTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCB--------CCCHHHHTTCTTCCEEECTTSCCCB---CC
T ss_pred CcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCc--------cCChhhhhcCCCCCEEECCCCCccc---ch
Confidence 88884255 37764 66655 88888888877665 233 56666667777666555442 22
Q ss_pred hcccccccccceeeccccCCceeeeccccCCCC-cceeeecCCCCCceeeccccc-------------------------
Q 003317 634 SFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKN-LHTLHMQFPFLDDLKFGCVRV------------------------- 687 (831)
Q Consensus 634 ~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~------------------------- 687 (831)
.+ ...++|+.|+++++.- ..++. .+..+++ |+.|++++|....++ ..+..
T Consensus 590 ~~-~~L~~L~~L~Ls~N~l-~~lp~-~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 590 AF-GTNVKLTDLKLDYNQI-EEIPE-DFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CC-CTTSEESEEECCSSCC-SCCCT-TSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred hh-cCCCcceEEECcCCcc-ccchH-HHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchh
Confidence 11 1123555555555442 22221 3444444 555555555433221 11100
Q ss_pred CC--CCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccc
Q 003317 688 GT--HAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKS 763 (831)
Q Consensus 688 ~~--~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 763 (831)
.. ..+++|+.|+|++| .+..+|. +..+++|+.|+|++|. +..++...+....+...++++|+.|+|++| ++..
T Consensus 666 ~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC
T ss_pred hhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCcc
Confidence 00 01236666766665 3445543 2356777777777743 445543211110001223346666666654 4445
Q ss_pred cCCCCC--CCCCccEEeecCCCCCCCCCCCCccc-cccceEEe
Q 003317 764 IYWSPL--PFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIR 803 (831)
Q Consensus 764 i~~~~~--~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~ 803 (831)
+|.... .+|+|+.|++++| +++.+|.....+ +|+.+.+.
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECC
T ss_pred chHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECC
Confidence 554443 5566666666554 444455443332 44444443
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=3.7e-17 Score=179.73 Aligned_cols=238 Identities=18% Similarity=0.193 Sum_probs=182.5
Q ss_pred ccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchhh-hcCCcccEEeccCCCCCCCCChhhhcCCcc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPREL-KALVNLKYLNLDHTTFLHPIPSPLISSFSM 584 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~i-~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~ 584 (831)
.+..+.++++|++++|.+..+++. ..+++|++|++++ +..+|..+ +++++|++|++++| .+..+++..++++++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCC
Confidence 467788999999999999998764 7899999999998 78888764 89999999999999 678887767999999
Q ss_pred CcEeeeccccCCCccccccccchhhhcCCcCCCc-------------------eeEeecchhHHHHHhhcccccccccce
Q 003317 585 LLVLRMFNCKSSSMANVVREVLIDELVQLDHLNE-------------------LSMSLHSIRALERFLSFHKLKSCTGSL 645 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~-------------------L~i~~~~~~~l~~l~~~~~l~~~L~~L 645 (831)
|++|++++|.+..+ . +..+++|+. |+++.+.+..+. .....+|+.|
T Consensus 167 L~~L~l~~n~l~~~-------~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L 231 (390)
T 3o6n_A 167 LQNLQLSSNRLTHV-------D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-----GPVNVELTIL 231 (390)
T ss_dssp CCEEECCSSCCSBC-------C---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-----CCCCSSCCEE
T ss_pred CCEEECCCCcCCcc-------c---cccccccceeecccccccccCCCCcceEEECCCCeeeecc-----ccccccccEE
Confidence 99999999988762 1 233344444 444333222110 0123578999
Q ss_pred eeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEe
Q 003317 646 YLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVS 724 (831)
Q Consensus 646 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~ 724 (831)
+++++.- ... ..+..+++|++|++++|......+..+. .+++|+.|+|++| .++.++. +..+|+|+.|+++
T Consensus 232 ~l~~n~l-~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 232 KLQHNNL-TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV----KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp ECCSSCC-CCC--GGGGGCTTCSEEECCSSCCCEEESGGGT----TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred ECCCCCC-ccc--HHHcCCCCccEEECCCCcCCCcChhHcc----ccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence 9988763 332 3677889999999999987776566664 3899999999998 5555553 5679999999999
Q ss_pred cccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCC
Q 003317 725 TCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 725 ~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
+|. +..++. .+..+++|+.|+++++ .+..++ ...+++|++|++++++
T Consensus 304 ~n~-l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 304 HNH-LLHVER--------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSC-CCCCGG--------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCc-ceecCc--------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 964 666655 5677899999999996 566664 5678999999998864
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.5e-17 Score=197.95 Aligned_cols=269 Identities=13% Similarity=0.168 Sum_probs=169.6
Q ss_pred ccccccceeEEEecccc-ccc--cCCC--------CCCCCcccccccC--cCccch--hhhcCCcccEEeccCCCCCCCC
Q 003317 510 GIERWKGVRKISLMQNQ-IRN--LPFT--------PICPDLQTLFLKG--INELPR--ELKALVNLKYLNLDHTTFLHPI 574 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~-i~~--lp~~--------~~~~~Lr~L~L~~--~~~lp~--~i~~L~~Lr~L~L~~~~~l~~l 574 (831)
.+..++++++|+|++|. +.. +|.. ..+++|++|++++ +..+|. .++++++|++|+|++| .+..+
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l 588 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHL 588 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBC
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccc
Confidence 45666777777777776 553 4431 3455777777776 556776 7777777777777777 45677
Q ss_pred ChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcC-CCceeEeecchhHHHHHhhcccc---------------
Q 003317 575 PSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDH-LNELSMSLHSIRALERFLSFHKL--------------- 638 (831)
Q Consensus 575 p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~-L~~L~i~~~~~~~l~~l~~~~~l--------------- 638 (831)
| . ++++++|++|++++|.+.. .+..+.++++ |+.|+++.+.+..++ .....
T Consensus 589 p-~-~~~L~~L~~L~Ls~N~l~~--------lp~~l~~l~~~L~~L~Ls~N~L~~lp---~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 589 E-A-FGTNVKLTDLKLDYNQIEE--------IPEDFCAFTDQVEGLGFSHNKLKYIP---NIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp C-C-CCTTSEESEEECCSSCCSC--------CCTTSCEECTTCCEEECCSSCCCSCC---SCCCTTCSSCEEEEECCSSC
T ss_pred h-h-hcCCCcceEEECcCCcccc--------chHHHhhccccCCEEECcCCCCCcCc---hhhhccccCCCCEEECcCCc
Confidence 7 3 7777777777777776654 2333455555 556665544433211 11111
Q ss_pred ----------------cccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccC---CCCCCCccEEE
Q 003317 639 ----------------KSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVG---THAFHSLHTVR 699 (831)
Q Consensus 639 ----------------~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~l~~L~~L~ 699 (831)
..+|+.|+++++. ...++...+..+++|+.|++++|....++...+... ..++++|+.|+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 1245555555544 222222223356778888888776654443333211 12344889999
Q ss_pred EEcCCCCCCCCc-cc--ccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccc------cccccCCCCCC
Q 003317 700 IYYCSKLRDLTW-LA--LAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLM------NLKSIYWSPLP 770 (831)
Q Consensus 700 L~~c~~l~~l~~-l~--~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~------~l~~i~~~~~~ 770 (831)
|++| .+..+|. +. .+++|+.|+|++|. +..++. .+..+++|+.|+|++++ -...+|.....
T Consensus 735 Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~--------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT--------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp CCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC--------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred CCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccch--------hhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 9888 5556664 54 78999999998854 555655 56788999999997633 24456666677
Q ss_pred CCCccEEeecCCCCCCCCCCCCccccccceEEecc
Q 003317 771 FPQLMEIRVNGCPILQKLPLDSSSAKDRKIVIRAK 805 (831)
Q Consensus 771 ~p~L~~L~l~~C~~L~~lp~~~~~~~l~~~~i~~~ 805 (831)
+++|+.|++++|. +..+|..... +|+.+.+.++
T Consensus 805 L~~L~~L~Ls~N~-L~~Ip~~l~~-~L~~LdLs~N 837 (876)
T 4ecn_A 805 CPSLIQLQIGSND-IRKVDEKLTP-QLYILDIADN 837 (876)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCCS-SSCEEECCSC
T ss_pred CCCCCEEECCCCC-CCccCHhhcC-CCCEEECCCC
Confidence 9999999999874 5889987654 7888888855
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.7e-17 Score=192.73 Aligned_cols=243 Identities=17% Similarity=0.174 Sum_probs=183.2
Q ss_pred ccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchh-hhcCCcccEEeccCCCCCCCCChhhhcCCcc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTTFLHPIPSPLISSFSM 584 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~ 584 (831)
.+..+.++++|+|++|.+..+++. ..+++|++|+|++ +..+|.. ++++++|++|+|++| .+..+|+..++++++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCc
Confidence 467788999999999999998765 7899999999998 7788876 489999999999999 678887766999999
Q ss_pred CcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhh--------------cccccccccceeeccc
Q 003317 585 LLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLS--------------FHKLKSCTGSLYLNVW 650 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~--------------~~~l~~~L~~L~l~~~ 650 (831)
|++|++++|.+..+ . +..+++|+.|++..+.+..+..... ......+|+.|+++++
T Consensus 173 L~~L~L~~N~l~~~-------~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 173 LQNLQLSSNRLTHV-------D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp CCEEECTTSCCSBC-------C---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred CcEEECcCCCCCCc-------C---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence 99999999988762 1 2333444444443322211100000 0012347899999887
Q ss_pred cCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEecccCc
Q 003317 651 EHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVSTCANM 729 (831)
Q Consensus 651 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l 729 (831)
.- ... ..+..+++|+.|++++|......+..+. .+++|+.|+|++| .+..+|. +..+|+|+.|+|++|. +
T Consensus 243 ~l-~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l 313 (597)
T 3oja_B 243 NL-TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV----KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-L 313 (597)
T ss_dssp CC-CCC--GGGGGCTTCSEEECCSSCCCEEESGGGT----TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-C
T ss_pred CC-CCC--hhhccCCCCCEEECCCCccCCCCHHHhc----CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-C
Confidence 63 222 3677899999999999988776666665 3899999999998 5555554 5679999999999965 5
Q ss_pred cccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCC
Q 003317 730 EEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 730 ~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
..++. .+..+++|+.|+|+++ .+..++ ...+++|+.|++++||
T Consensus 314 ~~i~~--------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHVER--------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCGG--------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CccCc--------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 56665 5678999999999996 566654 5678999999999875
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=5.9e-17 Score=173.83 Aligned_cols=241 Identities=15% Similarity=0.181 Sum_probs=163.6
Q ss_pred ccceeEEEeccccccccCC--CCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 514 WKGVRKISLMQNQIRNLPF--TPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~--~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
..++++|++++|.+..+++ ...+++|++|++++ +..+ |..++++++|++|++++| .+..+|.. +. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN-LP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSS-CC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcc-cc--ccCCEE
Confidence 3678888998888888765 37888899998887 5555 677888899999999888 67888875 43 788899
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcc
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLH 668 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 668 (831)
++++|.+..+ ....+.++++|+.|++..+.+......+...... +|+.|+++++. ...++. .+ .++|+
T Consensus 129 ~l~~n~i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~-~~--~~~L~ 196 (332)
T 2ft3_A 129 RIHDNRIRKV-------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK-DL--PETLN 196 (332)
T ss_dssp ECCSSCCCCC-------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS-SS--CSSCS
T ss_pred ECCCCccCcc-------CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc-cc--cCCCC
Confidence 9888887762 2334677888888888766554221111111112 67777777765 222322 11 26788
Q ss_pred eeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccCCCC
Q 003317 669 TLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDP 746 (831)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 746 (831)
+|++++|....+++..+. .+++|+.|++++| .+..++ ++..+++|+.|++++| .+..++. .+..
T Consensus 197 ~L~l~~n~i~~~~~~~l~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~--------~l~~ 262 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLL----RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA--------GLPD 262 (332)
T ss_dssp CCBCCSSCCCCCCTTSST----TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT--------TGGG
T ss_pred EEECCCCcCCccCHHHhc----CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecCh--------hhhc
Confidence 888888876655444443 3778888888887 444443 4777888888888875 4556655 5667
Q ss_pred CCccceecccccccccccCCCCC-------CCCCccEEeecCCCCC
Q 003317 747 FAKLEYLVLENLMNLKSIYWSPL-------PFPQLMEIRVNGCPIL 785 (831)
Q Consensus 747 ~~~L~~L~L~~~~~l~~i~~~~~-------~~p~L~~L~l~~C~~L 785 (831)
+++|+.|+++++ .++.++.... .+++|+.|++.++|-.
T Consensus 263 l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 888888888874 5666553211 1567888888887643
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.9e-17 Score=176.84 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=142.1
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFL 571 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l 571 (831)
+...+.....+| ..+..+.++++|++++|.+..+|.. ..+++|++|++++ +..+|..+++|++|++|++++|..+
T Consensus 86 L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 86 LELRSVPLPQFP--DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEESSCCSSCC--SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred EEccCCCchhcC--hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 334444445555 3467789999999999999999875 8999999999998 7789999999999999999998788
Q ss_pred CCCChhhhcC---------CccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccc
Q 003317 572 HPIPSPLISS---------FSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCT 642 (831)
Q Consensus 572 ~~lp~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L 642 (831)
..+|.. ++. +++|++|++++|.+.. .+..+.++++|+.|+++.+.+.
T Consensus 164 ~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~N~l~--------------- 219 (328)
T 4fcg_A 164 TELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS--------LPASIANLQNLKSLKIRNSPLS--------------- 219 (328)
T ss_dssp CCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC--------CCGGGGGCTTCCEEEEESSCCC---------------
T ss_pred cccChh-HhhccchhhhccCCCCCEEECcCCCcCc--------chHhhcCCCCCCEEEccCCCCC---------------
Confidence 889985 554 8888888888887665 2344556666666665533221
Q ss_pred cceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceE
Q 003317 643 GSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNI 721 (831)
Q Consensus 643 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L 721 (831)
.++ ..+..+++|+.|++++|......+..+. .+++|+.|+|++|.....+| .++.+++|+.|
T Consensus 220 ------------~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 220 ------------ALG-PAIHHLPKLEELDLRGCTALRNYPPIFG----GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp ------------CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTT----CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred ------------cCc-hhhccCCCCCEEECcCCcchhhhHHHhc----CCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 111 1344556666666666655543333332 25666666666665555554 35566666666
Q ss_pred EEecccCccccccCCccccccCCCCCCccceeccc
Q 003317 722 GVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLE 756 (831)
Q Consensus 722 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~ 756 (831)
+|++|+.++.+|. .++.+++|+.+.+.
T Consensus 283 ~L~~n~~~~~iP~--------~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 283 DLRGCVNLSRLPS--------LIAQLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCCCCCG--------GGGGSCTTCEEECC
T ss_pred eCCCCCchhhccH--------HHhhccCceEEeCC
Confidence 6666665555554 45555666655554
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.2e-16 Score=171.32 Aligned_cols=222 Identities=15% Similarity=0.183 Sum_probs=100.4
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++++|++++|.+..++.. ..+++|++|++++ +..+ |..++++++|++|++++| .+..+|.. +. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hc--ccccEEE
Confidence 3455555555555554432 4455555555554 3333 444555555555555555 34455543 21 4555555
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+..+ ....+.++++|+.|++..+.+.... .....+..+++|++
T Consensus 128 l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 128 VHENEITKV-------RKSVFNGLNQMIVVELGTNPLKSSG-------------------------IENGAFQGMKKLSY 175 (330)
T ss_dssp CCSSCCCBB-------CHHHHTTCTTCCEEECCSSCCCGGG-------------------------BCTTGGGGCTTCCE
T ss_pred CCCCccccc-------CHhHhcCCccccEEECCCCcCCccC-------------------------cChhhccCCCCcCE
Confidence 555544431 2223444444444444433321100 11113444555555
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC--CcccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL--TWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
|++++|....++. . .+++|+.|++++|. +..+ ..+..+++|+.|++++|. +..++.. .+..+
T Consensus 176 L~l~~n~l~~l~~-~------~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l 239 (330)
T 1xku_A 176 IRIADTNITTIPQ-G------LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG-------SLANT 239 (330)
T ss_dssp EECCSSCCCSCCS-S------CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTT-------TGGGS
T ss_pred EECCCCccccCCc-c------ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChh-------hccCC
Confidence 5555554433211 1 12455555555542 3222 134455555555555533 3332221 33445
Q ss_pred CccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCC
Q 003317 748 AKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPL 790 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~ 790 (831)
++|+.|+++++ .+..++.....+++|++|++++| .++.+|.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccCh
Confidence 55555555554 44445444445555555555553 3444443
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=4.6e-17 Score=174.64 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=186.5
Q ss_pred ccccccceeEEEeccccccccCC--CCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 510 GIERWKGVRKISLMQNQIRNLPF--TPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~--~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
.+..+.++++|++++|.+..+++ ...+++|++|++++ +..+|..+. ++|++|++++| .+..+|...+.++++|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccC
Confidence 46778899999999999998744 38899999999998 778887765 89999999999 7889998778999999
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELK 665 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~ 665 (831)
++|++++|.+.. ....+..+..+ +|+.|+++.+.+..++ . ...++|+.|+++++. ........+..++
T Consensus 150 ~~L~l~~n~l~~-----~~~~~~~~~~l-~L~~L~l~~n~l~~l~---~--~~~~~L~~L~l~~n~-i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 150 NCIEMGGNPLEN-----SGFEPGAFDGL-KLNYLRISEAKLTGIP---K--DLPETLNELHLDHNK-IQAIELEDLLRYS 217 (332)
T ss_dssp CEEECCSCCCBG-----GGSCTTSSCSC-CCSCCBCCSSBCSSCC---S--SSCSSCSCCBCCSSC-CCCCCTTSSTTCT
T ss_pred CEEECCCCcccc-----CCCCcccccCC-ccCEEECcCCCCCccC---c--cccCCCCEEECCCCc-CCccCHHHhcCCC
Confidence 999999998864 12234555666 7888888876655322 1 123589999999876 3444434678899
Q ss_pred CcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCC
Q 003317 666 NLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNL 744 (831)
Q Consensus 666 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~ 744 (831)
+|++|++++|....+++.++. .+++|+.|++++| .+..+| ++..+++|+.|+++++ .+..++...+.... ..
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-~~ 290 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLS----FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG-FG 290 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGG----GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-CC
T ss_pred CCCEEECCCCcCCcCChhHhh----CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccc-cc
Confidence 999999999987776555554 3899999999998 566766 4889999999999995 47766543222111 12
Q ss_pred CCCCccceeccccccccc-cc-CCCCCCCCCccEEeecCCC
Q 003317 745 DPFAKLEYLVLENLMNLK-SI-YWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 745 ~~~~~L~~L~L~~~~~l~-~i-~~~~~~~p~L~~L~l~~C~ 783 (831)
..+++|+.|.+.+++-.. .+ +.....+++|+.|++++|.
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 236889999999976331 22 2234568889999998875
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=3.3e-17 Score=183.16 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=87.4
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
+..++++++|++++|.+..+| ...+++|++|++++ +..+| ++++++|++|++++| .+..+| ++++++|++|
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD---VSQNPLLTYL 132 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC---CTTCTTCCEE
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec---CCCCCcCCEE
Confidence 334444444444444444443 34444444444443 33332 444444444444444 334433 3444444444
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecc-hhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS-IRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
++++|.+..+ .+.++++|+.|++..+. +..+ .+ ...++|+.|+++++. ...+ .+..+++|
T Consensus 133 ~l~~N~l~~l----------~l~~l~~L~~L~l~~n~~~~~~----~~-~~l~~L~~L~ls~n~-l~~l---~l~~l~~L 193 (457)
T 3bz5_A 133 NCARNTLTEI----------DVSHNTQLTELDCHLNKKITKL----DV-TPQTQLTTLDCSFNK-ITEL---DVSQNKLL 193 (457)
T ss_dssp ECTTSCCSCC----------CCTTCTTCCEEECTTCSCCCCC----CC-TTCTTCCEEECCSSC-CCCC---CCTTCTTC
T ss_pred ECCCCcccee----------ccccCCcCCEEECCCCCccccc----cc-ccCCcCCEEECCCCc-ccee---ccccCCCC
Confidence 4444444331 13344444444444331 1100 01 112356666665544 2222 24455666
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEeccc
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCA 727 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 727 (831)
+.|++++|....++ + ..+++|+.|++++| .++.+| ++.+++|+.|+++++.
T Consensus 194 ~~L~l~~N~l~~~~---l----~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 194 NRLNCDTNNITKLD---L----NQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CEEECCSSCCSCCC---C----TTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred CEEECcCCcCCeec---c----ccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence 66666666544331 1 23677788888776 455565 6677788888877753
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=183.86 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC----cccccCCCceEEEecccCccccccCCcc
Q 003317 663 ELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT----WLALAPNVRNIGVSTCANMEEIISPGKI 738 (831)
Q Consensus 663 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~l~~~~~~ 738 (831)
.+++|++|++++|...+..+.++. .+++|+.|++++| .+..++ .++.+++|+.|++++|.....++.....
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCC----CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hCCcccEEEeECCccChhhhhhhc----cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 445555566655544432222222 3666666666665 333322 2556677777777765432224321010
Q ss_pred c--ccc------------CCCCC-CccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCC-Cccc-cccceE
Q 003317 739 S--QVQ------------NLDPF-AKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLD-SSSA-KDRKIV 801 (831)
Q Consensus 739 ~--~~~------------~~~~~-~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~-~~~~-~l~~~~ 801 (831)
. .+. ....+ ++|+.|+++++ +++.+|.....+++|++|++++| +++.+|.. .... +++.+.
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 0 000 11122 57777777775 56677766668899999999987 78889875 3322 566666
Q ss_pred Ee
Q 003317 802 IR 803 (831)
Q Consensus 802 i~ 803 (831)
+.
T Consensus 475 l~ 476 (520)
T 2z7x_B 475 LH 476 (520)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.4e-16 Score=179.47 Aligned_cols=189 Identities=17% Similarity=0.227 Sum_probs=104.4
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC-cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG-INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~-~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
+..+.++++|++++|.+..++....+++|+.|++++ +..++ .++++++|++|++++| .+..++. +.++++|++|+
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 205 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNLESLI 205 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEE
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEE
Confidence 555566666666666666665556666666666654 22333 2677777888888877 4666654 67777788888
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+... ..+..+++|+.|++..+.+..+..+. ..++|+.|+++++.- .... .+..+++|+.
T Consensus 206 l~~n~l~~~---------~~~~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l-~~~~--~~~~l~~L~~ 269 (466)
T 1o6v_A 206 ATNNQISDI---------TPLGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQI-SNLA--PLSGLTKLTE 269 (466)
T ss_dssp CCSSCCCCC---------GGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCC-CCCG--GGTTCTTCSE
T ss_pred ecCCccccc---------ccccccCCCCEEECCCCCcccchhhh----cCCCCCEEECCCCcc-ccch--hhhcCCCCCE
Confidence 877766551 11455666666666655444332211 123566666665542 1111 2445556666
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecc
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTC 726 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 726 (831)
|++++|....+++ +. .+++|+.|++++| .+..++.+..+++|+.|++++|
T Consensus 270 L~l~~n~l~~~~~--~~----~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 270 LKLGANQISNISP--LA----GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp EECCSSCCCCCGG--GT----TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred EECCCCccCcccc--cc----CCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 6666554443221 11 2455555555554 3444444555555555555554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=183.17 Aligned_cols=248 Identities=18% Similarity=0.178 Sum_probs=158.1
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
+..+.++++|+|++|.+..+|.. ..+++|++|+|++ +..+ |..+.++++|++|++++| .+..++...+.++++|
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCC
Confidence 34445555556655555555542 4555566666554 3322 344555666666666665 3444443345566666
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELK 665 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~ 665 (831)
++|++++|.+..+ ....+.++++|+.|++..+.+..+.. .......+|+.|+++++.....++. ......
T Consensus 155 ~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 224 (477)
T 2id5_A 155 EQLTLEKCNLTSI-------PTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTP-NCLYGL 224 (477)
T ss_dssp CEEEEESCCCSSC-------CHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECT-TTTTTC
T ss_pred CEEECCCCcCccc-------ChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCc-ccccCc
Confidence 6666666655441 23345666777777766554432211 1112245799999998876555543 333445
Q ss_pred CcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccC
Q 003317 666 NLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQN 743 (831)
Q Consensus 666 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 743 (831)
+|++|++++|....++...+. .+++|+.|+|++|. +..++ .+..+++|+.|+|++|. +..+... .
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~ 291 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVR----HLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY-------A 291 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHT----TCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECTT-------T
T ss_pred cccEEECcCCcccccCHHHhc----CccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECHH-------H
Confidence 999999999987766544444 38999999999984 55544 37789999999999965 5555332 6
Q ss_pred CCCCCccceecccccccccccCCC-CCCCCCccEEeecCCC
Q 003317 744 LDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVNGCP 783 (831)
Q Consensus 744 ~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~ 783 (831)
+..+++|+.|+|+++ .++.++.. ...+++|++|+++++|
T Consensus 292 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 778999999999996 77777654 3568999999998765
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=8.3e-17 Score=187.91 Aligned_cols=120 Identities=18% Similarity=0.095 Sum_probs=75.7
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHT 568 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~ 568 (831)
.+...+.+...+| . .-..++++|++++|.+..+++. ..+++|++|++++ +..+ |..++++++|++|+|++|
T Consensus 16 ~~~c~~~~l~~iP---~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLNEIP---G-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCSSCC---T-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcccCc---C-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3444445555555 1 1124678888888888777543 6788888888876 4444 566777888888888877
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
.+..+++..++++++|++|++++|.+..+ .+..+.++++|+.|+++.+.
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 92 -PLIFMAETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp -CCSEECTTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSC
T ss_pred -cccccChhhhcccccccEeeccccCcccC-------CcchhccCCcccEEECCCCc
Confidence 45555444577778888888877776652 12234555555555555443
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2.1e-16 Score=169.36 Aligned_cols=251 Identities=15% Similarity=0.141 Sum_probs=182.0
Q ss_pred ccccccceeEEEeccccccccCC-C-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 510 GIERWKGVRKISLMQNQIRNLPF-T-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~-~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
.+..+.++++|++++|.+..+++ . ..+++|++|++++ +..+|..+. ++|++|++++| .+..+|...+.++++|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccc
Confidence 36778999999999999998843 3 8899999999998 778887665 79999999999 7888988779999999
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELK 665 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~ 665 (831)
++|++++|.+.. ....+..+.++++|+.|++..+.+..++ . ...++|+.|+++++. ........+..++
T Consensus 148 ~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~l~---~--~~~~~L~~L~l~~n~-l~~~~~~~~~~l~ 216 (330)
T 1xku_A 148 IVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNITTIP---Q--GLPPSLTELHLDGNK-ITKVDAASLKGLN 216 (330)
T ss_dssp CEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCCSCC---S--SCCTTCSEEECTTSC-CCEECTGGGTTCT
T ss_pred cEEECCCCcCCc-----cCcChhhccCCCCcCEEECCCCccccCC---c--cccccCCEEECCCCc-CCccCHHHhcCCC
Confidence 999999998864 2234567788889999988876654322 1 122578899998876 4444334677888
Q ss_pred CcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCC
Q 003317 666 NLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNL 744 (831)
Q Consensus 666 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~ 744 (831)
+|++|++++|.....++..+. .+++|+.|+|++| .+..+| ++..+++|+.|++++|. +..++...+.... ..
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~-~~ 289 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLA----NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG-YN 289 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGG----GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS-CC
T ss_pred CCCEEECCCCcCceeChhhcc----CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc-cc
Confidence 999999999887665554554 3788999999988 455665 57888999999999854 6666543222111 12
Q ss_pred CCCCccceecccccccccccC---CCCCCCCCccEEeecCC
Q 003317 745 DPFAKLEYLVLENLMNLKSIY---WSPLPFPQLMEIRVNGC 782 (831)
Q Consensus 745 ~~~~~L~~L~L~~~~~l~~i~---~~~~~~p~L~~L~l~~C 782 (831)
..++.|+.|++.+++- ..+. .....+++|+.++++++
T Consensus 290 ~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 2357888888888653 2222 23345677888887764
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=1.5e-16 Score=185.81 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=66.8
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccC
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSML 585 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L 585 (831)
+..++++++|++++|.+..+++. .++++|++|++++ +..+ |..+++|++|++|++++| .+..+|...++++++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCC
Confidence 44556666666666666665432 5666666666665 4444 556666666777777666 4555553346666677
Q ss_pred cEeeeccccCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
++|++++|.+..+ ..+..+.++++|+.|+++.+.
T Consensus 131 ~~L~L~~n~l~~~------~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 131 KKLNVAHNFIHSC------KLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CEEECCSSCCCCC------CCCGGGGTCTTCCEEECCSSC
T ss_pred CEEeCCCCcccce------echHhHhhcCCCCEEEccCCc
Confidence 7777766665531 235567777778877776554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=1.4e-16 Score=179.10 Aligned_cols=259 Identities=16% Similarity=0.140 Sum_probs=167.4
Q ss_pred cccccceeEEEeccccccccCC-C-CCCCCcccccccC--cCc-cchh--hhcCCcccEEeccCCCCCCCC-ChhhhcCC
Q 003317 511 IERWKGVRKISLMQNQIRNLPF-T-PICPDLQTLFLKG--INE-LPRE--LKALVNLKYLNLDHTTFLHPI-PSPLISSF 582 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~-~-~~~~~Lr~L~L~~--~~~-lp~~--i~~L~~Lr~L~L~~~~~l~~l-p~~~i~~L 582 (831)
+..++++++|++++|.+..+++ . ..+++|++|++++ +.. .|.. ++++++|++|++++| .+..+ |...++++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l 153 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNM 153 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGC
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCC
Confidence 4556677777777777666533 2 6677777777776 332 3433 677777777777777 45555 43336677
Q ss_pred ccCcEeeeccccCCCccccccccchhh-------------------------------hcCCcCCCceeEeecchhHH--
Q 003317 583 SMLLVLRMFNCKSSSMANVVREVLIDE-------------------------------LVQLDHLNELSMSLHSIRAL-- 629 (831)
Q Consensus 583 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------------L~~L~~L~~L~i~~~~~~~l-- 629 (831)
++|++|++++|.+... .+..+.. +..+++|+.|+++.+.+...
T Consensus 154 ~~L~~L~L~~n~l~~~----~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSI----CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp TTCCEEECTTCCBSCC----CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred CcccEEeCCCCccccc----ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 7777777777766542 1111111 12335566666665543321
Q ss_pred HHHhhc---cc--------------------------------ccccccceeeccccCCceeeeccccCCCCcceeeecC
Q 003317 630 ERFLSF---HK--------------------------------LKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQF 674 (831)
Q Consensus 630 ~~l~~~---~~--------------------------------l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 674 (831)
..+... .. ...+|+.|+++++.- .......+..+++|++|++++
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTT
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc-cccchhhcccCCCCCEEECCC
Confidence 111110 00 013566666666542 222223577889999999999
Q ss_pred CCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 675 PFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
|......+..+. .+++|+.|+|++| .++.++ .+..+++|+.|++++|. +..++.. .+..+++|++
T Consensus 309 n~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~ 375 (455)
T 3v47_A 309 NEINKIDDNAFW----GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQ-------SFLGLPNLKE 375 (455)
T ss_dssp SCCCEECTTTTT----TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTT-------TTTTCTTCCE
T ss_pred CcccccChhHhc----CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChh-------hccccccccE
Confidence 988776555554 4899999999998 455543 47889999999999965 5555332 6788999999
Q ss_pred ecccccccccccCCCC-CCCCCccEEeecCCCCCCCCC
Q 003317 753 LVLENLMNLKSIYWSP-LPFPQLMEIRVNGCPILQKLP 789 (831)
Q Consensus 753 L~L~~~~~l~~i~~~~-~~~p~L~~L~l~~C~~L~~lp 789 (831)
|+++++ +++.++... ..+++|++|++++++---..|
T Consensus 376 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999995 777777654 679999999999876555555
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=4.3e-17 Score=190.50 Aligned_cols=152 Identities=12% Similarity=0.097 Sum_probs=83.1
Q ss_pred cccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccC---CCCCCCccEEEEEcCCCCCCCCc-cc--c
Q 003317 641 CTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVG---THAFHSLHTVRIYYCSKLRDLTW-LA--L 714 (831)
Q Consensus 641 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~l~~L~~L~L~~c~~l~~l~~-l~--~ 714 (831)
+|+.|+++++. ...++...+..+++|+.|++++|....++...+... ...+++|+.|+|++| .+..+|. +. .
T Consensus 434 ~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTT
T ss_pred CCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhcc
Confidence 45555555544 222222223345666677776666554433332210 111236777777776 3445553 43 6
Q ss_pred cCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc------ccccccCCCCCCCCCccEEeecCCCCCCCC
Q 003317 715 APNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL------MNLKSIYWSPLPFPQLMEIRVNGCPILQKL 788 (831)
Q Consensus 715 l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~------~~l~~i~~~~~~~p~L~~L~l~~C~~L~~l 788 (831)
+++|+.|+|++|. +..++. .+..+++|+.|+|+++ .-...+|.....+++|++|++++|. ++.+
T Consensus 512 l~~L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i 581 (636)
T 4eco_A 512 LPYLVGIDLSYNS-FSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKV 581 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC
T ss_pred CCCcCEEECCCCC-CCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCcc
Confidence 7777777777744 444544 4556777777777442 2234455555567777777777653 4777
Q ss_pred CCCCccccccceEEecc
Q 003317 789 PLDSSSAKDRKIVIRAK 805 (831)
Q Consensus 789 p~~~~~~~l~~~~i~~~ 805 (831)
|.... .+|+.+.+.++
T Consensus 582 p~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 582 NEKIT-PNISVLDIKDN 597 (636)
T ss_dssp CSCCC-TTCCEEECCSC
T ss_pred CHhHh-CcCCEEECcCC
Confidence 76544 25666666644
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=3.1e-17 Score=191.60 Aligned_cols=268 Identities=16% Similarity=0.068 Sum_probs=194.3
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
.+..+.+++.|+++++.+..+|....+++|++|++++ +..+| .+ .+++|++|++++|..+..++ +..+++|++
T Consensus 280 ~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~ 354 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK---KVALPSLSY 354 (606)
T ss_dssp SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC---CCCCTTCCE
T ss_pred ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh---hccCCCCCE
Confidence 3667788999999999998888668899999999988 77788 45 89999999999986555442 678999999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+.. ....+..+..+++|+.|++..+.+..+. ......++|+.|+++++.-....+...+..+++|
T Consensus 355 L~ls~n~l~~-----~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 355 LDLSRNALSF-----SGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp EECCSSCEEE-----EEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred EECcCCccCC-----CcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 9999987765 2223567788888888888866544322 2222345788899887753222222356778899
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCC-CC-cccccCCCceEEEecccCccccccCCccccccCCC
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRD-LT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLD 745 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~ 745 (831)
+.|++++|......+..+. .+++|+.|++++|..... +| .++.+++|+.|++++|. +..++.. .+.
T Consensus 427 ~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~ 494 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFL----GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-------VFD 494 (606)
T ss_dssp CEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-------TTT
T ss_pred CEEECcCCCCCccchhhhc----CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh-------hhc
Confidence 9999999876654444443 488999999988843332 33 47788999999999875 4444331 577
Q ss_pred CCCccceeccccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCCccc--cccceEEec
Q 003317 746 PFAKLEYLVLENLMNLKSI-YWSPLPFPQLMEIRVNGCPILQKLPLDSSSA--KDRKIVIRA 804 (831)
Q Consensus 746 ~~~~L~~L~L~~~~~l~~i-~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~--~l~~~~i~~ 804 (831)
.+++|+.|+++++ ++..+ +.....+++|++|++++| +++.+|...... +++.+.+.+
T Consensus 495 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 495 TLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp TCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCS
T ss_pred ccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccC
Confidence 8899999999987 45544 555677899999999887 488888875443 367777653
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=2.4e-17 Score=197.22 Aligned_cols=257 Identities=18% Similarity=0.216 Sum_probs=132.2
Q ss_pred cccceeEEEecccccc-ccCCC--CCCCCcccccccC--c-CccchhhhcCCcccEEeccCCCCCC-CCChhhhcCCccC
Q 003317 513 RWKGVRKISLMQNQIR-NLPFT--PICPDLQTLFLKG--I-NELPRELKALVNLKYLNLDHTTFLH-PIPSPLISSFSML 585 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~-~lp~~--~~~~~Lr~L~L~~--~-~~lp~~i~~L~~Lr~L~L~~~~~l~-~lp~~~i~~L~~L 585 (831)
.+.++++|++++|.+. .+|.. ..+++|++|++++ + ..+|..++++++|++|++++| .+. .+|...++++++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCC
Confidence 4567777777777766 45554 2347777777776 2 356777777777788877777 344 6776557777777
Q ss_pred cEeeeccccCCCccccccccchhhhcCCc-CCCceeEeecchhHHHHHhhcc-cccccccceeeccccCCceeeeccccC
Q 003317 586 LVLRMFNCKSSSMANVVREVLIDELVQLD-HLNELSMSLHSIRALERFLSFH-KLKSCTGSLYLNVWEHSNWLDVLSLGE 663 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~~~~~l~~l~~~~-~l~~~L~~L~l~~~~~~~~~~~~~l~~ 663 (831)
++|++++|.+.. ..+..+.++. +|+.|+++.+.+.... ..... ...++|+.|+++++.-....+ ..+..
T Consensus 346 ~~L~Ls~n~l~~-------~~p~~l~~l~~~L~~L~Ls~N~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~ 416 (768)
T 3rgz_A 346 KVLDLSFNEFSG-------ELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSN 416 (768)
T ss_dssp CEEECCSSEEEE-------CCCTTHHHHTTTCSEEECCSSEEEEEC-CTTTTCSTTCCCCEEECCSSEEEEECC-GGGGG
T ss_pred CEEeCcCCccCc-------cccHHHHhhhcCCcEEEccCCCcCCCc-ChhhhhcccCCccEEECCCCccccccC-HHHhc
Confidence 777777776653 1233344443 5555555543322100 00000 002345666665554211111 13445
Q ss_pred CCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCcccccc
Q 003317 664 LKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQ 742 (831)
Q Consensus 664 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~ 742 (831)
+++|+.|++++|......+..+. .+++|+.|++++|.....+| .+..+++|+.|++++|.....++.
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------- 484 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLG----SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-------- 484 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGG----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------
T ss_pred CCCCCEEECcCCcccCcccHHHh----cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH--------
Confidence 55666666665544332233332 24555555555553332333 244555555555555443323332
Q ss_pred CCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCC
Q 003317 743 NLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLD 791 (831)
Q Consensus 743 ~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~ 791 (831)
.+..+++|+.|++++|.-...+|.....+++|++|++++|.-...+|..
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 3444555555555554333334444444555555555554333344443
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=8.4e-17 Score=187.86 Aligned_cols=271 Identities=14% Similarity=0.120 Sum_probs=173.2
Q ss_pred cccccceeEEEeccccccccCCC-CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
+..++++++|++++|.+..+|.. ..+++|++|++++ +..+ |..++.+++|++|++++|.....+|.+.+.++++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 45567777777777777777665 6777777777776 4444 456777777888888777433366665577777888
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCC
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKN 666 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 666 (831)
+|++++|.+.. ....+..+.++++|+.|++..+.+.... +......++|+.|+++++.-....+...+..+++
T Consensus 354 ~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 354 ELDLSHDDIET-----SDCCNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp EEECCSSCCCE-----EEESTTTTTTCTTCCEEECCSCSCEEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred EEECCCCcccc-----ccCcchhcccCCCCCEEECCCCcCCcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 88887777665 2222455677777777777755443211 1111223468888887765322222223667788
Q ss_pred cceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCC----CCCcccccCCCceEEEecccCccccccCCcccccc
Q 003317 667 LHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLR----DLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQ 742 (831)
Q Consensus 667 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~----~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~ 742 (831)
|+.|++++|......+..+. .+++|+.|++++|.-.. ....+..+++|+.|++++|. +..++..
T Consensus 427 L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------- 494 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFD----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH------- 494 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTT----TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT-------
T ss_pred CCEEECCCCccCCcCHHHHh----CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh-------
Confidence 88888888876554444443 37888888888874322 11346778888888888865 4444321
Q ss_pred CCCCCCccceecccccccccc-cCCCCCCCCCccEEeecCCCCCCCCCCCC-ccc-cccceEEe
Q 003317 743 NLDPFAKLEYLVLENLMNLKS-IYWSPLPFPQLMEIRVNGCPILQKLPLDS-SSA-KDRKIVIR 803 (831)
Q Consensus 743 ~~~~~~~L~~L~L~~~~~l~~-i~~~~~~~p~L~~L~l~~C~~L~~lp~~~-~~~-~l~~~~i~ 803 (831)
.+..+++|+.|+++++ ++.. .+.....+++| +|++++| +++.+|... ... +++.+.+.
T Consensus 495 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECT
T ss_pred hhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCC
Confidence 5778899999999986 4444 34455668888 8999886 566665432 211 45555544
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=9e-16 Score=177.16 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=82.5
Q ss_pred cCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc----ccccCCCceEEEecccCccccccCCc
Q 003317 662 GELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW----LALAPNVRNIGVSTCANMEEIISPGK 737 (831)
Q Consensus 662 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----l~~l~~L~~L~L~~c~~l~~l~~~~~ 737 (831)
..+++|++|++++|...+..+..+. .+++|+.|++++| .++.++. +..+++|+.|++++|.....++...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS----TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC----SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCccccchhhhhc----ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 4456677777777655542233332 3677777777776 4554432 55677777777777543222332111
Q ss_pred cc--cc------------cCCCCC-CccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCC-Cccc-cccce
Q 003317 738 IS--QV------------QNLDPF-AKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLD-SSSA-KDRKI 800 (831)
Q Consensus 738 ~~--~~------------~~~~~~-~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~-~~~~-~l~~~ 800 (831)
.. .+ .....+ ++|+.|+++++ +++.+|.....+++|++|++++| +++.+|.. .... +++.+
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 00 00 012233 58888888886 77788877778999999999885 78889986 3322 56666
Q ss_pred EEec
Q 003317 801 VIRA 804 (831)
Q Consensus 801 ~i~~ 804 (831)
.+.+
T Consensus 503 ~l~~ 506 (562)
T 3a79_B 503 WLHD 506 (562)
T ss_dssp ECCS
T ss_pred EecC
Confidence 6653
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=189.44 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=78.9
Q ss_pred ceEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC---cCcc-chhhhcCCcccEEecc
Q 003317 493 NYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG---INEL-PRELKALVNLKYLNLD 566 (831)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~---~~~l-p~~i~~L~~Lr~L~L~ 566 (831)
..+...+.+...+| . ...++++|+|++|.+..+++. ..+++|++|+|++ +..+ |..+++|++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP---~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVP---Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCC---S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCC---C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 34555666667777 3 457888888888888776443 7788888888876 3344 5677788888888888
Q ss_pred CCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhh--hcCCcCCCceeEeecc
Q 003317 567 HTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDE--LVQLDHLNELSMSLHS 625 (831)
Q Consensus 567 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~~L~~L~i~~~~ 625 (831)
+| .+..++++.++++++|++|++++|.+.. ..+.. +.+|++|+.|+++.+.
T Consensus 82 ~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 82 SS-KIYFLHPDAFQGLFHLFELRLYFCGLSD-------AVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TC-CCCEECTTSSCSCSSCCCEECTTCCCSS-------CCSTTCCCSSCSSCCEEEEESCC
T ss_pred CC-cCcccCHhHccCCcccCEeeCcCCCCCc-------ccccCccccccCCCCEEECCCCc
Confidence 87 5666544457788888888887776654 11222 4455555555555443
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=173.30 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=162.0
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCC--CCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF--TPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHT 568 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~--~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~ 568 (831)
.+...+.....+| . .-..++++|++++|.+..++. ...+++|++|++++ +..+ |..++++++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP---~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIP---S-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCC---T-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccc---c-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3444455556666 1 223588999999999888876 37889999999987 5555 456888999999999998
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecc-hhHHHHHhhcccccccccceee
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS-IRALERFLSFHKLKSCTGSLYL 647 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l 647 (831)
.+..+|...++++++|++|++++|.+..+ + ....+.++++|+.|++..+. +..+. .......++|+.|++
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-----~-~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 111 -YLSNLSSSWFKPLSSLTFLNLLGNPYKTL-----G-ETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEI 181 (353)
T ss_dssp -CCSSCCHHHHTTCTTCSEEECTTCCCSSS-----C-SSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEE
T ss_pred -cCCcCCHhHhCCCccCCEEECCCCCCccc-----C-chhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEEC
Confidence 68888887688899999999998877762 1 11245667777777777552 22110 001111345667777
Q ss_pred ccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-----cccccCCCceEE
Q 003317 648 NVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-----WLALAPNVRNIG 722 (831)
Q Consensus 648 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-----~l~~l~~L~~L~ 722 (831)
+++. ........+..+++|++|++++|....++..... .+++|+.|++++|. ++.++ .....+.++.++
T Consensus 182 ~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 182 DASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD----VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH----HTTTEEEEEEESCB-CTTCCCC------CCCCCCEEE
T ss_pred CCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhh----hcccccEEECCCCc-cccccccccccccccchhhccc
Confidence 6654 2223223556667777777777665443332222 25677777777663 33322 122345566666
Q ss_pred EecccCcc----ccccCCccccccCCCCCCccceecccccccccccCCCC-CCCCCccEEeecCCC
Q 003317 723 VSTCANME----EIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSP-LPFPQLMEIRVNGCP 783 (831)
Q Consensus 723 L~~c~~l~----~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~-~~~p~L~~L~l~~C~ 783 (831)
++++..-. .++. .+..+++|+.|+++++ +++.++... ..+++|++|++++++
T Consensus 256 L~~~~l~~~~l~~l~~--------~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNVKITDESLFQVMK--------LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESCBCCHHHHHHHHH--------HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccCcchhhhHH--------HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 66643111 1221 3456677777777775 566666553 567777777777764
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.68 E-value=1.5e-16 Score=183.31 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=54.6
Q ss_pred ccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCC--ChhhhcCC
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPI--PSPLISSF 582 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~l--p~~~i~~L 582 (831)
.+..++++++|++++|.+..+++. ..+++|++|++++ +..+|. .++++++|++|++++| .+..+ |. .++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTS-LFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSC-SCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhh-hhhcc
Confidence 355667777777777777766542 6777777777776 555544 3777777777777777 45533 33 26667
Q ss_pred ccCcEeeecccc
Q 003317 583 SMLLVLRMFNCK 594 (831)
Q Consensus 583 ~~L~~L~l~~~~ 594 (831)
++|++|++++|.
T Consensus 123 ~~L~~L~L~~n~ 134 (549)
T 2z81_A 123 TNLQTLRIGNVE 134 (549)
T ss_dssp TTCCEEEEEESS
T ss_pred CCccEEECCCCc
Confidence 777777776665
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=2.8e-16 Score=183.66 Aligned_cols=202 Identities=9% Similarity=0.116 Sum_probs=130.4
Q ss_pred cccc--cccceeEEEeccccccc-cCCC-CCCCCcccccccCcC-----ccchhhhcC------CcccEEeccCCCCCCC
Q 003317 509 QGIE--RWKGVRKISLMQNQIRN-LPFT-PICPDLQTLFLKGIN-----ELPRELKAL------VNLKYLNLDHTTFLHP 573 (831)
Q Consensus 509 ~~~~--~~~~lr~L~l~~~~i~~-lp~~-~~~~~Lr~L~L~~~~-----~lp~~i~~L------~~Lr~L~L~~~~~l~~ 573 (831)
..+. .++++++|++++|.+.. +|.. .++++|++|++++.. .+|..+++| ++|++|++++| .+..
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc
Confidence 4556 88999999999998654 6655 889999999999843 689999887 99999999999 6789
Q ss_pred CCh--hhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhccccccc-ccceeeccc
Q 003317 574 IPS--PLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSC-TGSLYLNVW 650 (831)
Q Consensus 574 lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~-L~~L~l~~~ 650 (831)
+|. . ++++++|++|++++|.+.+ ..+ .+.++++|+.|+++.+.+. .++....-..+ |+.|+++++
T Consensus 320 ip~~~~-l~~l~~L~~L~L~~N~l~g-------~ip-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 320 FPVETS-LQKMKKLGMLECLYNQLEG-------KLP-AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCCHHH-HTTCTTCCEEECCSCCCEE-------ECC-CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSS
T ss_pred cCchhh-hccCCCCCEEeCcCCcCcc-------chh-hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCC
Confidence 997 5 9999999999999998873 122 5667777777777766544 22221222234 777777766
Q ss_pred cCCceeeeccccC--CCCcceeeecCCCCCceeeccccc---CCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEE
Q 003317 651 EHSNWLDVLSLGE--LKNLHTLHMQFPFLDDLKFGCVRV---GTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGV 723 (831)
Q Consensus 651 ~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L 723 (831)
.- ..++. .+.. +++|+.|++++|......+..+.. ..-.+++|+.|++++| .+..+|. +..+++|+.|++
T Consensus 388 ~l-~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 388 KL-KYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp CC-SSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEEC
T ss_pred cC-cccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEEC
Confidence 52 23332 2222 336777777766554422222210 0002345666666655 3334442 233556666666
Q ss_pred ecc
Q 003317 724 STC 726 (831)
Q Consensus 724 ~~c 726 (831)
++|
T Consensus 465 s~N 467 (636)
T 4eco_A 465 MGN 467 (636)
T ss_dssp CSS
T ss_pred CCC
Confidence 553
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=1.8e-16 Score=189.60 Aligned_cols=261 Identities=16% Similarity=0.133 Sum_probs=176.8
Q ss_pred ccceeEEEeccccccc-cCCC-CCCCCcccccccC---cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 514 WKGVRKISLMQNQIRN-LPFT-PICPDLQTLFLKG---INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~-lp~~-~~~~~Lr~L~L~~---~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
+.++++|++++|.+.. +|.. ..+++|++|++++ ...+|..++++++|++|++++|.....+|.. ++.+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEE
Confidence 4567777777777763 4433 6777888888876 3356777888888888888887433356664 7788888888
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcc
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLH 668 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 668 (831)
++++|.+.. ..+..+.++++|+.|++..+.+.. .++......++|+.|+++++.-....+ ..+..+++|+
T Consensus 472 ~L~~N~l~~-------~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~ 541 (768)
T 3rgz_A 472 ILDFNDLTG-------EIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLI 541 (768)
T ss_dssp ECCSSCCCS-------CCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCC
T ss_pred EecCCcccC-------cCCHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCC
Confidence 888877765 245567777777777777665431 111111223467888887776332333 2566778888
Q ss_pred eeeecCCCCCc-eeecccc-------------------------------------------------------------
Q 003317 669 TLHMQFPFLDD-LKFGCVR------------------------------------------------------------- 686 (831)
Q Consensus 669 ~L~l~~~~~~~-~~~~~~~------------------------------------------------------------- 686 (831)
.|++++|.... ++.....
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 88887775442 2111100
Q ss_pred ----cCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccc
Q 003317 687 ----VGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNL 761 (831)
Q Consensus 687 ----~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 761 (831)
.....+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|. .++.+++|+.|+|+++.--
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--------~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--------EVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCE
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--------HHhCCCCCCEEECCCCccc
Confidence 012235788999999886555666 488899999999999765556665 7788999999999997555
Q ss_pred cccCCCCCCCCCccEEeecCCCCCCCCCCCCc
Q 003317 762 KSIYWSPLPFPQLMEIRVNGCPILQKLPLDSS 793 (831)
Q Consensus 762 ~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~ 793 (831)
..+|.....+++|++|++++|+--..+|....
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 56777778899999999998766566776543
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=180.72 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=41.0
Q ss_pred CCCCCCccceeccccccccccc-CCCCCCCCCccEEeecCCCCCCCCCCCC-cc-ccccceEEec
Q 003317 743 NLDPFAKLEYLVLENLMNLKSI-YWSPLPFPQLMEIRVNGCPILQKLPLDS-SS-AKDRKIVIRA 804 (831)
Q Consensus 743 ~~~~~~~L~~L~L~~~~~l~~i-~~~~~~~p~L~~L~l~~C~~L~~lp~~~-~~-~~l~~~~i~~ 804 (831)
.+..+++|+.|++++| .++.+ +.....+++|++|++++| +++.+|... .. .+++.+.+.+
T Consensus 465 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecC
Confidence 5667788888888876 45554 445567889999999887 677776532 22 2567777764
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=3.1e-16 Score=180.70 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=104.2
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTT 569 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~ 569 (831)
+...+.....+| . .-..++++|++++|.+..+++. ..+++|++|++++ +..+| ..++++++|++|++++|
T Consensus 10 c~~~~~~l~~ip---~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n- 84 (549)
T 2z81_A 10 CDGRSRSFTSIP---S-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84 (549)
T ss_dssp EECTTSCCSSCC---S-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred EECCCCcccccc---c-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-
Confidence 333444555666 2 2237899999999999987543 8999999999998 66655 67999999999999999
Q ss_pred CCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecc-hhHHHHHhhcccccccccceeec
Q 003317 570 FLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS-IRALERFLSFHKLKSCTGSLYLN 648 (831)
Q Consensus 570 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~ 648 (831)
.+..+|+..++++++|++|++++|.+..+ ..+..+.++++|+.|++..+. ...+.. ....-.++|+.|+++
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTL------GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIK 156 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSS------CSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEEEEEE
T ss_pred ccCccCHHHhccCCCCcEEECCCCccccc------chhhhhhccCCccEEECCCCccccccCH--hhhhcccccCeeecc
Confidence 78888887799999999999999988752 123456778888888887654 221110 011113467777776
Q ss_pred ccc
Q 003317 649 VWE 651 (831)
Q Consensus 649 ~~~ 651 (831)
++.
T Consensus 157 ~n~ 159 (549)
T 2z81_A 157 ALS 159 (549)
T ss_dssp ETT
T ss_pred CCc
Confidence 654
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=6.8e-16 Score=173.03 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=127.6
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++++|+|++|.+..+++. ..+++|++|+|++ +..++ ..+.++++|++|+|++| .+..+|.+.+.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 4555666666655554332 4555555555554 33332 44555555555555555 45555544455555555555
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+..+ ....+.+++ +|+.|+++++.....++...+.++++|++
T Consensus 154 L~~N~l~~~-------~~~~~~~l~--------------------------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 154 LRNNPIESI-------PSYAFNRVP--------------------------SLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CCSCCCCEE-------CTTTTTTCT--------------------------TCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CCCCCccee-------CHhHHhcCC--------------------------cccEEeCCCCCCccccChhhccCCCCCCE
Confidence 555544431 111222333 34445554444444444445667788888
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
|++++|....++ .+ ..+++|+.|+|++|. +..+ | .+..+++|+.|++++|. +..+... .+..+
T Consensus 201 L~L~~n~l~~~~--~~----~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l 265 (452)
T 3zyi_A 201 LNLGMCNIKDMP--NL----TPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERN-------AFDGL 265 (452)
T ss_dssp EECTTSCCSSCC--CC----TTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEECTT-------TTTTC
T ss_pred EECCCCcccccc--cc----cccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceECHH-------HhcCC
Confidence 888888765542 12 247788888888874 4443 3 36778888888888754 4444331 56677
Q ss_pred CccceecccccccccccCCC-CCCCCCccEEeecCCC
Q 003317 748 AKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVNGCP 783 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~ 783 (831)
++|+.|+|+++ +++.++.. ...+++|+.|+++++|
T Consensus 266 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 88888888875 66666654 3457888888887764
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=7.5e-16 Score=172.68 Aligned_cols=236 Identities=16% Similarity=0.198 Sum_probs=175.8
Q ss_pred eeEEEeccccccccCCCCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 517 VRKISLMQNQIRNLPFTPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 517 lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
.+.++..+.++..+|.. -.++|++|+|++ +..+ |..++++++|++|+|++| .+..++...+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 45677777888888764 347899999998 5555 577899999999999999 688888667999999999999999
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
.+..+ ....+.++++|+.|+++.+. ...++...+..+++|+.|+++
T Consensus 134 ~l~~~-------~~~~~~~l~~L~~L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 134 WLTVI-------PSGAFEYLSKLRELWLRNNP---------------------------IESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CCSBC-------CTTTSSSCTTCCEEECCSCC---------------------------CCEECTTTTTTCTTCCEEECC
T ss_pred cCCcc-------ChhhhcccCCCCEEECCCCC---------------------------cceeCHhHHhcCCcccEEeCC
Confidence 87762 22335566666666665332 222322356788999999999
Q ss_pred CCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 674 FPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 674 ~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
+|..++ ++...+. .+++|+.|+|++| .+..+|.+..+++|+.|+|++|. +..++.. .+..+++|+.
T Consensus 180 ~~~~l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~ 246 (452)
T 3zyi_A 180 ELKKLEYISEGAFE----GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPG-------SFHGLSSLKK 246 (452)
T ss_dssp CCTTCCEECTTTTT----TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGG-------GGTTCTTCCE
T ss_pred CCCCccccChhhcc----CCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCcc-------cccCccCCCE
Confidence 977766 4444443 4899999999998 67788889999999999999965 5555332 6788999999
Q ss_pred ecccccccccccCC-CCCCCCCccEEeecCCCCCCCCCCCCcc-c-cccceEEe
Q 003317 753 LVLENLMNLKSIYW-SPLPFPQLMEIRVNGCPILQKLPLDSSS-A-KDRKIVIR 803 (831)
Q Consensus 753 L~L~~~~~l~~i~~-~~~~~p~L~~L~l~~C~~L~~lp~~~~~-~-~l~~~~i~ 803 (831)
|+++++ .+..++. ....+++|+.|++++| +++.+|..... . +|+.+.+.
T Consensus 247 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 247 LWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECC
T ss_pred EEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEcc
Confidence 999986 5666543 4567899999999986 78888875422 2 56666655
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=170.43 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=128.1
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++++|+|++|.+..++.. ..+++|++|+|++ +..++ ..+.++++|++|+|++| .+..+|.+.+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 4555666666665555432 4555555555554 33333 34555555555555555 45555544455555555555
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+..+ ....+.+++ +|+.|+++++.....++...+.++++|++
T Consensus 143 L~~N~i~~~-------~~~~~~~l~--------------------------~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 143 LRNNPIESI-------PSYAFNRIP--------------------------SLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CCSCCCCEE-------CTTTTTTCT--------------------------TCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCCCccccc-------CHHHhhhCc--------------------------ccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 555544431 111222333 34444554444444444345667788888
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
|++++|....++ .+ ..+++|+.|+|++| .+..+ + .+..+++|+.|+++++. +..++.. .+..+
T Consensus 190 L~L~~n~l~~~~--~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l 254 (440)
T 3zyj_A 190 LNLAMCNLREIP--NL----TPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERN-------AFDNL 254 (440)
T ss_dssp EECTTSCCSSCC--CC----TTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-------SSTTC
T ss_pred ecCCCCcCcccc--cc----CCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChh-------hhcCC
Confidence 888888665543 12 24778888888887 44443 2 46778888888888744 5554332 56677
Q ss_pred CccceecccccccccccCCCC-CCCCCccEEeecCCC
Q 003317 748 AKLEYLVLENLMNLKSIYWSP-LPFPQLMEIRVNGCP 783 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~~i~~~~-~~~p~L~~L~l~~C~ 783 (831)
++|+.|+|+++ +++.++... ..+++|+.|+++++|
T Consensus 255 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 88888888885 666666543 457888888887654
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=170.38 Aligned_cols=236 Identities=18% Similarity=0.250 Sum_probs=176.4
Q ss_pred eeEEEeccccccccCCCCCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 517 VRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 517 lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
.+.++..+..+..+|.. -.++++.|+|++ +..++ ..+.++++|++|+|++| .+..++.+.+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 45677788888888864 337899999998 66665 67899999999999999 688888777999999999999999
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
.+..+ ....+.++++|+.|+++.+. ...++...+..+++|++|+++
T Consensus 123 ~l~~~-------~~~~~~~l~~L~~L~L~~N~---------------------------i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 123 RLTTI-------PNGAFVYLSKLKELWLRNNP---------------------------IESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSSC-------CTTTSCSCSSCCEEECCSCC---------------------------CCEECTTTTTTCTTCCEEECC
T ss_pred cCCee-------CHhHhhccccCceeeCCCCc---------------------------ccccCHHHhhhCcccCEeCCC
Confidence 87762 22345666666666655332 122222356778999999999
Q ss_pred CCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 674 FPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 674 ~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
+|.... ++...+. .+++|+.|+|++| .++.+|.+..+++|+.|+|++|. +..++.. .+..+++|+.
T Consensus 169 ~~~~l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~ 235 (440)
T 3zyj_A 169 ELKRLSYISEGAFE----GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPG-------SFQGLMHLQK 235 (440)
T ss_dssp CCTTCCEECTTTTT----TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTT-------TTTTCTTCCE
T ss_pred CCCCcceeCcchhh----cccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChh-------hhccCccCCE
Confidence 977666 4444443 4899999999998 67888889999999999999964 5555432 6778999999
Q ss_pred ecccccccccccCC-CCCCCCCccEEeecCCCCCCCCCCCCcc--ccccceEEe
Q 003317 753 LVLENLMNLKSIYW-SPLPFPQLMEIRVNGCPILQKLPLDSSS--AKDRKIVIR 803 (831)
Q Consensus 753 L~L~~~~~l~~i~~-~~~~~p~L~~L~l~~C~~L~~lp~~~~~--~~l~~~~i~ 803 (831)
|+++++ .++.++. ....+++|++|++++| +++.+|..... .+|+.+.+.
T Consensus 236 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 236 LWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp EECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC
T ss_pred EECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC
Confidence 999985 6666654 3567899999999986 78888875422 256666554
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=2.5e-16 Score=166.90 Aligned_cols=236 Identities=17% Similarity=0.150 Sum_probs=140.0
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc---chhhhcCCcccEEeccC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL---PRELKALVNLKYLNLDH 567 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l---p~~i~~L~~Lr~L~L~~ 567 (831)
+...+.+...+| . .-..++++|++++|.+..+|.. ..+++|++|++++ +..+ |..+..+++|++|++++
T Consensus 12 l~c~~~~l~~ip---~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVP---T-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCC---S-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcccCC---C-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 333444455555 1 2236788888888888887764 6788888888886 3333 67777788888888888
Q ss_pred CCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceee
Q 003317 568 TTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYL 647 (831)
Q Consensus 568 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l 647 (831)
| .+..+|.. +.++++|++|++++|.+..+ .....+.++++|+.|+++.+.+.
T Consensus 88 n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~~~~l~~L~~L~l~~n~l~-------------------- 139 (306)
T 2z66_A 88 N-GVITMSSN-FLGLEQLEHLDFQHSNLKQM------SEFSVFLSLRNLIYLDISHTHTR-------------------- 139 (306)
T ss_dssp C-SEEEEEEE-EETCTTCCEEECTTSEEESS------TTTTTTTTCTTCCEEECTTSCCE--------------------
T ss_pred C-ccccChhh-cCCCCCCCEEECCCCccccc------ccchhhhhccCCCEEECCCCcCC--------------------
Confidence 8 57777775 77888888888888776652 11234555566655555433221
Q ss_pred ccccCCceeeeccccCCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEe
Q 003317 648 NVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVS 724 (831)
Q Consensus 648 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~ 724 (831)
......+..+++|++|++++|...+ ..+..+. .+++|+.|++++| .+..+ | .+..+++|+.|+++
T Consensus 140 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 140 -------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT----ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp -------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT----TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred -------ccchhhcccCcCCCEEECCCCccccccchhHHh----hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECC
Confidence 1111134556667777776665443 2233332 3666777777666 33333 2 35566777777776
Q ss_pred cccCccccccCCccccccCCCCCCccceecccccccccc-cCCCCCCCC-CccEEeecCCC
Q 003317 725 TCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKS-IYWSPLPFP-QLMEIRVNGCP 783 (831)
Q Consensus 725 ~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-i~~~~~~~p-~L~~L~l~~C~ 783 (831)
+|. +..++.. .+..+++|+.|+++++ .+.. .+.....+| +|++|++++++
T Consensus 208 ~N~-l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 208 HNN-FFSLDTF-------PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TSC-CSBCCSG-------GGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCc-cCccChh-------hccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 643 3333221 3455667777777765 3333 233344453 67777776643
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=180.71 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCCCCCccceecccccccc-cccCCCCCCCCCccEEeecCCCCCCCC-CCCCccc-cccceEEecc
Q 003317 743 NLDPFAKLEYLVLENLMNL-KSIYWSPLPFPQLMEIRVNGCPILQKL-PLDSSSA-KDRKIVIRAK 805 (831)
Q Consensus 743 ~~~~~~~L~~L~L~~~~~l-~~i~~~~~~~p~L~~L~l~~C~~L~~l-p~~~~~~-~l~~~~i~~~ 805 (831)
.+..+++|+.|++++|.-. ..+|.....+++|++|++++| +++.+ |...... +|+.+.+.++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC
Confidence 4456677777777776432 245555666778888888776 34444 4443332 5666666643
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=1.2e-15 Score=180.54 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=50.1
Q ss_pred ccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 512 ERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
..++++++|++++|.+..+++. .++++|++|++++ +..+|. .++++++|++|++++| .+..+|+..++++++|+
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCC
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCC
Confidence 3344444444444444444332 3444555555543 444443 3455555555555555 34444433355555555
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
+|++++|.+.. ..+..+.++++|+.|++..+.
T Consensus 125 ~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 125 TLDLSHNGLSS-------TKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EEECCSSCCSC-------CCCCSSSCCTTCCEEECCSSC
T ss_pred EEECCCCcccc-------cCchhhcccccCCEEEccCCc
Confidence 55555554433 122334455556666555443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=4.4e-16 Score=164.93 Aligned_cols=215 Identities=19% Similarity=0.183 Sum_probs=150.5
Q ss_pred ecCCCceeeccccccccccceeEEEeccccccccC---CC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCC
Q 003317 497 EAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLP---FT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTF 570 (831)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp---~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~ 570 (831)
..+.....+| ...+..+.++++|++++|.+..+. .. ..+++|++|++++ +..+|..+..+++|++|++++| .
T Consensus 35 L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~ 112 (306)
T 2z66_A 35 LESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-N 112 (306)
T ss_dssp CCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-E
T ss_pred CCCCccCccC-HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-c
Confidence 3333444444 112567899999999999987652 22 5789999999998 7788988999999999999999 6
Q ss_pred CCCCCh-hhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecc
Q 003317 571 LHPIPS-PLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNV 649 (831)
Q Consensus 571 l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~ 649 (831)
+..+|. ..+.++++|++|++++|.+.. ..+..+.++++|+.|++..+.+..
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~~--------------------- 164 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFNGLSSLEVLKMAGNSFQE--------------------- 164 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEE-------CSTTTTTTCTTCCEEECTTCEEGG---------------------
T ss_pred ccccccchhhhhccCCCEEECCCCcCCc-------cchhhcccCcCCCEEECCCCcccc---------------------
Confidence 788775 458999999999999998765 233445666667666665433211
Q ss_pred ccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEeccc
Q 003317 650 WEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCA 727 (831)
Q Consensus 650 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 727 (831)
...+ ..+..+++|++|++++|....+.+..+. .+++|+.|++++|. +..++ .+..+++|+.|++++|.
T Consensus 165 ----~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 165 ----NFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ----GEEC-SCCTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ----ccch-hHHhhCcCCCEEECCCCCcCCcCHHHhc----CCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 0011 1456678888888888876665455543 37888888888873 44444 36678888888888865
Q ss_pred CccccccCCccccccCCCCCC-ccceecccccc
Q 003317 728 NMEEIISPGKISQVQNLDPFA-KLEYLVLENLM 759 (831)
Q Consensus 728 ~l~~l~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 759 (831)
.....+. .+..+| +|++|++++++
T Consensus 235 l~~~~~~--------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKKQ--------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSSS--------SCCCCCTTCCEEECTTCC
T ss_pred CcccCHH--------HHHhhhccCCEEEccCCC
Confidence 3333322 455664 88888888753
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=1.8e-16 Score=168.71 Aligned_cols=239 Identities=18% Similarity=0.134 Sum_probs=137.1
Q ss_pred ccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 514 WKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
+.++++|++++|.+..+++. ..+++|++|++++ +..++. ++.+++|++|++++| .+..+| .+++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc-----CCCCcCEEE
Confidence 45677777777777766532 6777777777776 444443 667777777777777 455444 336777777
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccc-cCCCCcc
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSL-GELKNLH 668 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~ 668 (831)
+++|.+..+ + . ..+++|+.|+++.+.+..+.. ......++|+.|+++++. ........+ ..+++|+
T Consensus 106 l~~n~l~~~-----~--~---~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 106 AANNNISRV-----S--C---SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (317)
T ss_dssp CCSSCCSEE-----E--E---CCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CCCCccCCc-----C--c---cccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCC
Confidence 777766552 1 1 124556666666555443221 011113466777776654 233322233 3466777
Q ss_pred eeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-CcccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 669 TLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-TWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
+|++++|....++... .+++|+.|++++| .++.+ +.+..+++|+.|++++| .+..++. .+..+
T Consensus 173 ~L~L~~N~l~~~~~~~------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~--------~~~~l 236 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQV------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK--------ALRFS 236 (317)
T ss_dssp EEECTTSCCCEEECCC------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT--------TCCCC
T ss_pred EEECCCCcCccccccc------ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh--------HhhcC
Confidence 7777777655442111 2567777777776 34443 34566777777777764 3555544 45566
Q ss_pred Cccceecccccccc-cccCCCCCCCCCccEEeecCCCCCCCC
Q 003317 748 AKLEYLVLENLMNL-KSIYWSPLPFPQLMEIRVNGCPILQKL 788 (831)
Q Consensus 748 ~~L~~L~L~~~~~l-~~i~~~~~~~p~L~~L~l~~C~~L~~l 788 (831)
++|+.|++++++-. ..++.....+++|+.|++.+|+.++..
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 77777777765433 223333445667777777666665543
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=8.3e-16 Score=171.74 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=138.0
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
+..+.++++|++++|.+..++ ...+++|++|++++ +..+| ++.+++|++|++++| .+..+| ++++++|++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEE
Confidence 567788999999999988875 67889999999987 66666 788999999999998 677775 6788889999
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcc
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLH 668 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 668 (831)
++++|.... .+ .+..+++|+.|+++.+.+..++ + ...++|+.|+++++. ...+ .+..+++|+
T Consensus 154 ~l~~n~~~~--------~~-~~~~l~~L~~L~ls~n~l~~l~----l-~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~ 215 (457)
T 3bz5_A 154 DCHLNKKIT--------KL-DVTPQTQLTTLDCSFNKITELD----V-SQNKLLNRLNCDTNN-ITKL---DLNQNIQLT 215 (457)
T ss_dssp ECTTCSCCC--------CC-CCTTCTTCCEEECCSSCCCCCC----C-TTCTTCCEEECCSSC-CSCC---CCTTCTTCS
T ss_pred ECCCCCccc--------cc-ccccCCcCCEEECCCCccceec----c-ccCCCCCEEECcCCc-CCee---ccccCCCCC
Confidence 998885433 11 3566777778877766655432 1 123467777777665 2222 356677777
Q ss_pred eeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCc--cccccCCCC
Q 003317 669 TLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGK--ISQVQNLDP 746 (831)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~--~~~~~~~~~ 746 (831)
.|++++|....++ + ..+++|+.|++++| .++.+| ++.+++|+.|+++++ .++.+.-... .+.. ..+.
T Consensus 216 ~L~Ls~N~l~~ip---~----~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~-~~~~ 284 (457)
T 3bz5_A 216 FLDCSSNKLTEID---V----TPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYF-QAEG 284 (457)
T ss_dssp EEECCSSCCSCCC---C----TTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEE-ECTT
T ss_pred EEECcCCcccccC---c----cccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCccCCcc-cccc
Confidence 7777777665542 2 13677777777776 344443 344555544444331 2222211000 0001 2344
Q ss_pred CCccceecccccccccccC
Q 003317 747 FAKLEYLVLENLMNLKSIY 765 (831)
Q Consensus 747 ~~~L~~L~L~~~~~l~~i~ 765 (831)
+++|+.|++++|+.++.++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEE
T ss_pred cccCCEEECCCCcccceec
Confidence 5666666666665555444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=2.3e-16 Score=167.37 Aligned_cols=230 Identities=14% Similarity=0.088 Sum_probs=174.2
Q ss_pred cccccccceeEEEecc-cccc-ccCCC-CCCCCcccccccC--cC-ccchhhhcCCcccEEeccCCCCCC-CCChhhhcC
Q 003317 509 QGIERWKGVRKISLMQ-NQIR-NLPFT-PICPDLQTLFLKG--IN-ELPRELKALVNLKYLNLDHTTFLH-PIPSPLISS 581 (831)
Q Consensus 509 ~~~~~~~~lr~L~l~~-~~i~-~lp~~-~~~~~Lr~L~L~~--~~-~lp~~i~~L~~Lr~L~L~~~~~l~-~lp~~~i~~ 581 (831)
..+..++++++|++++ |.+. .+|.. .++++|++|++++ +. .+|..++++++|++|++++| .+. .+|.. +++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~ 147 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISS 147 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-GGG
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChH-Hhc
Confidence 4677889999999995 7776 45554 8899999999998 54 78999999999999999999 566 67875 999
Q ss_pred CccCcEeeeccccCCCccccccccchhhhcCCc-CCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeecc
Q 003317 582 FSMLLVLRMFNCKSSSMANVVREVLIDELVQLD-HLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLS 660 (831)
Q Consensus 582 L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~ 660 (831)
+++|++|++++|.+.. ..+..+.++. +|+.|+++.+.+... .+...... .|+.|+++++.- .......
T Consensus 148 l~~L~~L~L~~N~l~~-------~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~l-~L~~L~Ls~N~l-~~~~~~~ 216 (313)
T 1ogq_A 148 LPNLVGITFDGNRISG-------AIPDSYGSFSKLFTSMTISRNRLTGK--IPPTFANL-NLAFVDLSRNML-EGDASVL 216 (313)
T ss_dssp CTTCCEEECCSSCCEE-------ECCGGGGCCCTTCCEEECCSSEEEEE--CCGGGGGC-CCSEEECCSSEE-EECCGGG
T ss_pred CCCCCeEECcCCcccC-------cCCHHHhhhhhcCcEEECcCCeeecc--CChHHhCC-cccEEECcCCcc-cCcCCHH
Confidence 9999999999998874 2566777887 889998886654311 11111112 399999988763 2222236
Q ss_pred ccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccc
Q 003317 661 LGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKIS 739 (831)
Q Consensus 661 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~ 739 (831)
+..+++|+.|++++|......+. +. .+++|+.|+|++|.-...+| ++..+++|+.|++++|.....+|.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-~~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~----- 286 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-VG----LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----- 286 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-CC----CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-----
T ss_pred HhcCCCCCEEECCCCceeeecCc-cc----ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-----
Confidence 77899999999999976543222 22 47999999999985443555 588999999999999764445543
Q ss_pred cccCCCCCCccceecccccccccccC
Q 003317 740 QVQNLDPFAKLEYLVLENLMNLKSIY 765 (831)
Q Consensus 740 ~~~~~~~~~~L~~L~L~~~~~l~~i~ 765 (831)
.+.+++|+.|++.+++.+...|
T Consensus 287 ----~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 ----GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ----STTGGGSCGGGTCSSSEEESTT
T ss_pred ----CccccccChHHhcCCCCccCCC
Confidence 4789999999999988776544
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=5.2e-15 Score=170.33 Aligned_cols=247 Identities=22% Similarity=0.205 Sum_probs=155.2
Q ss_pred ceEEecCCCceeeccccccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCC
Q 003317 493 NYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTF 570 (831)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~ 570 (831)
..+...+..+..+| .. -.+++++|++++|.+..+|. .+++|++|+|++ +..+|. .+++|++|++++| .
T Consensus 43 ~~L~ls~n~L~~lp---~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 43 AVLNVGESGLTTLP---DC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-P 112 (622)
T ss_dssp CEEECCSSCCSCCC---SC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-C
T ss_pred cEEEecCCCcCccC---hh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-c
Confidence 34555555566666 21 12789999999999998887 688999999998 777776 7889999999998 6
Q ss_pred CCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccc
Q 003317 571 LHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVW 650 (831)
Q Consensus 571 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~ 650 (831)
+..+|. .+.+|++|++++|.+..+ +. .+++|+.|+++.+.+..++ ....+|+.|+++++
T Consensus 113 l~~l~~----~l~~L~~L~L~~N~l~~l-----p~------~l~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N 171 (622)
T 3g06_A 113 LTHLPA----LPSGLCKLWIFGNQLTSL-----PV------LPPGLQELSVSDNQLASLP------ALPSELCKLWAYNN 171 (622)
T ss_dssp CCCCCC----CCTTCCEEECCSSCCSCC-----CC------CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS
T ss_pred CCCCCC----CCCCcCEEECCCCCCCcC-----CC------CCCCCCEEECcCCcCCCcC------CccCCCCEEECCCC
Confidence 888876 567889999998887762 22 2367777777766554322 22346777777765
Q ss_pred cCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCcc
Q 003317 651 EHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANME 730 (831)
Q Consensus 651 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~ 730 (831)
. ...++ ..+++|+.|++++|....++. .+++|+.|++++| .++.+|. .+++|+.|++++| .+.
T Consensus 172 ~-l~~l~----~~~~~L~~L~Ls~N~l~~l~~--------~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N-~L~ 234 (622)
T 3g06_A 172 Q-LTSLP----MLPSGLQELSVSDNQLASLPT--------LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGN-RLT 234 (622)
T ss_dssp C-CSCCC----CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSS-CCS
T ss_pred C-CCCCc----ccCCCCcEEECCCCCCCCCCC--------ccchhhEEECcCC-cccccCC--CCCCCCEEEccCC-ccC
Confidence 4 22222 335677777777776544321 1456666666665 3444443 2466666666664 344
Q ss_pred ccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCccc-cccceEEe
Q 003317 731 EIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSSA-KDRKIVIR 803 (831)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~~-~l~~~~i~ 803 (831)
.++ ..+++|+.|+++++ +++.++. .+++|+.|++++| +++.+|.....+ +|+.+.+.
T Consensus 235 ~lp-----------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 235 SLP-----------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CCC-----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred cCC-----------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 332 23456666666664 5555553 4566666666664 555666543332 44445444
No 54
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=5.3e-15 Score=163.74 Aligned_cols=294 Identities=13% Similarity=0.047 Sum_probs=181.9
Q ss_pred CCcccchHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHHhhhhcc-CCCCC-EEEEEEeCCCCCHH
Q 003317 153 EPTVGLESTLDKVWSCL-G----E--ENVGIIGL--YGMGGVGKTTLLTQINNKFLDSR-KDDFD-VVIWVVVSKDLKIE 221 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-~~~F~-~~~wv~~s~~~~~~ 221 (831)
..++||+.+++++.+++ . + ...+.+.| +|++|+||||||+.+++...... ...|. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67899999999999888 3 2 24567777 99999999999999998864110 01233 46788877777889
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc--------cccccccCC---CCCC--CCc
Q 003317 222 RIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV--------DLTQLGVPL---PSPT--TAS 286 (831)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~l---~~~~--~gs 286 (831)
.++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+ +..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999999764321 23345666777777775 689999999997632 122221111 1112 344
Q ss_pred EEEEEcCChhHHhhcc---------CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhC------CCc
Q 003317 287 KVVFTTRFVEVCGAMK---------AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECG------GLP 351 (831)
Q Consensus 287 ~ilvTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~------GlP 351 (831)
.+|+||+...+...+. ....+.+.+++.++++++|...+.... ....-..+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5777887554321111 123399999999999999987764322 111223567889999999 999
Q ss_pred hHHHHHHHHh-c----cC---CChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcCC--CCcc
Q 003317 352 LALITIGRAM-A----CK---KQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFP--EDYK 421 (831)
Q Consensus 352 lai~~~~~~l-~----~~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~~~ 421 (831)
..+..++... . .. -+.+.+..++.... . ...+.-++..||+ +.+.++..++.+. .+..
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------A-ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 7665544321 1 11 12233333322110 0 2334557788998 7888888888653 3335
Q ss_pred ccHHHHHHHHH--h---cCCCCCcchhhHHHHHHHHHHHHHhccccccc
Q 003317 422 IHKMSLIDYWI--S---EKILDNNDRSRAINEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 422 i~~~~li~~W~--a---eg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 465 (831)
+....+...+. + .|. .. ........++++|...+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-KP----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-CC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCC-CC----CCHHHHHHHHHHHHhCCCEEee
Confidence 55555554442 2 121 11 1123455679999999999764
No 55
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=6.8e-15 Score=159.03 Aligned_cols=292 Identities=14% Similarity=0.072 Sum_probs=178.6
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC------CHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL------KIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~ 226 (831)
..++||+.+++++.+++..+ +++.|+|++|+|||||++++++.. + .+|+.+.... +...+.+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-----P----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-----S----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-----C----cEEEEeecccccccCCCHHHHHHH
Confidence 56899999999999988654 799999999999999999998763 1 6777765432 56666777
Q ss_pred HHHHhCC---------------C-CCCCCCCCHHHHHHHHHHHHcC-CcEEEEEcCCCCccc--------ccccccCCCC
Q 003317 227 IWKKIGL---------------C-DNSWRSKSLEDKAVDIFRVLSK-KKFVLLLDDMWKRVD--------LTQLGVPLPS 281 (831)
Q Consensus 227 i~~~l~~---------------~-~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~--------~~~l~~~l~~ 281 (831)
+...+.. . .......+..+....+.+.... ++++||+||++.... +......+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 7665532 0 0000123456666666666543 499999999976432 1111111111
Q ss_pred CCCCcEEEEEcCChhHHhhc-----------cC-CceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC
Q 003317 282 PTTASKVVFTTRFVEVCGAM-----------KA-HEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG 349 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 349 (831)
...+.++|+|++...+...+ +. ...+.+.+|+.+|+.+++.+.+..... +-..+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCC
Confidence 12467899998876532211 11 247899999999999999876543221 1124578899999999
Q ss_pred CchHHHHHHHHhccCCChhHHHH-HHHHHhcccCCCCCchhhhhHH-hhccCCCCchhHHHHHHHHhcCCCCccccHHHH
Q 003317 350 LPLALITIGRAMACKKQPEDWKY-AIQVLRRSASEFPGMDEVYPRL-KFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSL 427 (831)
Q Consensus 350 lPlai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~l 427 (831)
+|+++..++..+....+...+.. ..+.... .+...+ .+.+ + ++ ..+..+..+|. + ..+...+
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~l~~-~-~~-~~~~~l~~la~---g-~~~~~~l 301 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG---------LIMGELEELRR-R-SP-RYVDILRAIAL---G-YNRWSLI 301 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------HHHHHHHHHHH-H-CH-HHHHHHHHHHT---T-CCSHHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHH---------HHHHHHHHHHh-C-Ch-hHHHHHHHHHh---C-CCCHHHH
Confidence 99999998876532122222211 1111100 011111 1111 2 55 78888888887 2 2344455
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHHHHhcccccccCCCeEE-eCHHHHHHHH
Q 003317 428 IDYWISEKILDNNDRSRAINEGYYIIGVVLHSCLLEEAGNDWVK-MHDVIRDMAL 481 (831)
Q Consensus 428 i~~W~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mHdlv~d~a~ 481 (831)
....-+.. - .. .......+++.|.+.+++...+ ..|+ .|++++++.+
T Consensus 302 ~~~~~~~~-~-~~----~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKG-T-KI----PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTT-C-CC----CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHh-C-CC----CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 44332211 0 11 1234567899999999998753 4455 4888887653
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=174.15 Aligned_cols=138 Identities=20% Similarity=0.116 Sum_probs=82.8
Q ss_pred ccccceeeccccCCceeeeccccCCCCcceeeecCCCCCcee--ecccccCCCCCCCccEEEEEcCCCCCCCCc--cccc
Q 003317 640 SCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLK--FGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALA 715 (831)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l 715 (831)
++|+.|+++++.-....+ ..+..+++|+.|++++|....++ +..+. .+++|+.|++++|.-...+|. +..+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~----~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTT----QMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHT----TCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred CcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHh----hCCCCCEEECCCCcCCcccccchhccC
Confidence 355566665554211111 24567788899999888766522 12232 367788888877643322442 4455
Q ss_pred CCCceEEEecccCccccccCC------------cccccc-CCCCCCccceecccccccccccCCC-CCCCCCccEEeecC
Q 003317 716 PNVRNIGVSTCANMEEIISPG------------KISQVQ-NLDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVNG 781 (831)
Q Consensus 716 ~~L~~L~L~~c~~l~~l~~~~------------~~~~~~-~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~ 781 (831)
++|+.|++++|......+..- ....++ .+..+++|+.|+++++ +++.++.. ...+++|++|++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC
Confidence 666666666653222211100 000111 3557899999999996 78888876 56789999999998
Q ss_pred CC
Q 003317 782 CP 783 (831)
Q Consensus 782 C~ 783 (831)
+|
T Consensus 478 N~ 479 (520)
T 2z7x_B 478 NP 479 (520)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=1.9e-15 Score=174.36 Aligned_cols=121 Identities=23% Similarity=0.246 Sum_probs=85.7
Q ss_pred ceEEecCCCceeeccccccccccceeEEEeccccccccCC--CCCCCCcccccccC--cCcc-chhhhcCCcccEEeccC
Q 003317 493 NYLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF--TPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDH 567 (831)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~--~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~ 567 (831)
..+...+.....+| . .-..++++|++++|.+..+++ ...+++|++|++++ +..+ |..++++++|++|+|++
T Consensus 34 ~~l~ls~~~L~~ip---~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVP---K-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCC---T-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCC---C-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 44555555666666 1 123678888888888888764 37888888888887 5555 56688888888888888
Q ss_pred CCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 568 TTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 568 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
| .+..+|.. .+++|++|++++|.+..+ ..+..+.++++|+.|+++.+.+.
T Consensus 110 N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l------~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 110 N-RLQNISCC---PMASLRHLDLSFNDFDVL------PVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp S-CCCEECSC---CCTTCSEEECCSSCCSBC------CCCGGGGGCTTCCEEEEECSBCC
T ss_pred C-cCCccCcc---ccccCCEEECCCCCcccc------CchHhhcccCcccEEecCCCccc
Confidence 8 57788863 788888888888877652 12356667777777777765543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=165.45 Aligned_cols=243 Identities=17% Similarity=0.195 Sum_probs=175.8
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCC--CCCCCCcccccccC--cCccchh-hhcCCcccEEeccCCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF--TPICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTT 569 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~--~~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~ 569 (831)
+...+.....++ ...+..++++++|++++|.+..+++ ...+++|++|++++ +..+|.. ++++++|++|++++|
T Consensus 57 L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 134 (353)
T 2z80_A 57 LDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN- 134 (353)
T ss_dssp EECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-
T ss_pred EECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-
Confidence 334444444444 1246778999999999999998865 37899999999998 7788876 899999999999999
Q ss_pred CCCCCCh-hhhcCCccCcEeeecccc-CCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceee
Q 003317 570 FLHPIPS-PLISSFSMLLVLRMFNCK-SSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYL 647 (831)
Q Consensus 570 ~l~~lp~-~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l 647 (831)
.+..+|. ..+.++++|++|++++|. +.. .....+.++++|+.|+++.+.+.... +......++|+.|++
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTK-------IQRKDFAGLTFLEELEIDASDLQSYE--PKSLKSIQNVSHLIL 205 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCE-------ECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEE
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccc-------cCHHHccCCCCCCEEECCCCCcCccC--HHHHhccccCCeecC
Confidence 7889987 558999999999999985 433 23456778889999999877654321 111222457999999
Q ss_pred ccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCC-----CC-cccccCCCceE
Q 003317 648 NVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRD-----LT-WLALAPNVRNI 721 (831)
Q Consensus 648 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L 721 (831)
+++. ...++...+..+++|+.|++++|.....+...+. .....+.++.++++++. +.. +| ++..+++|+.|
T Consensus 206 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 206 HMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp ECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEE
T ss_pred CCCc-cccchhhhhhhcccccEEECCCCccccccccccc-cccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEE
Confidence 8876 3333322344578999999999987664433332 12246778999998873 332 22 46789999999
Q ss_pred EEecccCccccccCCccccccCCCCCCccceecccccc
Q 003317 722 GVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLM 759 (831)
Q Consensus 722 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 759 (831)
++++| .+..++.. .+..+++|++|++++++
T Consensus 283 ~Ls~N-~l~~i~~~-------~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRN-QLKSVPDG-------IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSS-CCCCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred ECCCC-CCCccCHH-------HHhcCCCCCEEEeeCCC
Confidence 99996 46676652 35789999999999874
No 59
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=2.5e-14 Score=154.93 Aligned_cols=289 Identities=13% Similarity=0.086 Sum_probs=173.2
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-----CCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-----LKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i 227 (831)
..++||+.+++.+.+ +.. +++.|+|++|+|||||++.+++... . ..+|+.+... .+.......+
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 568999999999999 755 6999999999999999999998863 2 2578887643 3445555555
Q ss_pred HHHhC--------------C------CCCCC-------CCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc-----ccccc
Q 003317 228 WKKIG--------------L------CDNSW-------RSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV-----DLTQL 275 (831)
Q Consensus 228 ~~~l~--------------~------~~~~~-------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l 275 (831)
...+. . +.... ...........+.+.-+ ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44331 0 00000 01234444444443322 49999999996532 22222
Q ss_pred ccCCCCCCCCcEEEEEcCChhHHhh----------c-cC-CceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHH
Q 003317 276 GVPLPSPTTASKVVFTTRFVEVCGA----------M-KA-HEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETV 343 (831)
Q Consensus 276 ~~~l~~~~~gs~ilvTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I 343 (831)
...+.....+..+|+|++....... . +. ...+.+.+|+.+|+.+++.+.+...... ... ...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHHH
Confidence 2212111246789999997653221 1 11 2578999999999999998866432211 122 2889
Q ss_pred HHHhCCCchHHHHHHHHhccCCChhHHHHH-HHHHhcccCCCCCchhhhhHHh-hccC--CCCchhHHHHHHHHhcCCCC
Q 003317 344 TKECGGLPLALITIGRAMACKKQPEDWKYA-IQVLRRSASEFPGMDEVYPRLK-FSYD--SLPGEKIRSCFLYCCLFPED 419 (831)
Q Consensus 344 ~~~c~GlPlai~~~~~~l~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~s~fp~~ 419 (831)
++.|+|+|+++..++..+....+...|..- .+.... .+...+. +.+. .||+ ..+..+..+|. +
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g 302 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK---------LILKEFENFLHGREIARK-RYLNIMRTLSK---C 302 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---C
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH---------HHHHHHHHHhhccccccH-HHHHHHHHHHc---C
Confidence 999999999999998876533333333221 111100 1111111 1111 5777 78899988887 2
Q ss_pred ccccHHHHHHHHH-hcCCCCCcchhhHHHHHHHHHHHHHhcccccccCCCeEE-eCHHHHHHH
Q 003317 420 YKIHKMSLIDYWI-SEKILDNNDRSRAINEGYYIIGVVLHSCLLEEAGNDWVK-MHDVIRDMA 480 (831)
Q Consensus 420 ~~i~~~~li~~W~-aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mHdlv~d~a 480 (831)
. +...+....- ..|. .........+++.|.+.+++...+ ..|+ .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 1 3444432210 1121 011234567899999999998754 4455 588988763
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=7.7e-16 Score=161.27 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=131.8
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTT 569 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~ 569 (831)
+...+.+...+| .....++++|++++|.+..++.. ..+++|++|++++ +..+ |..++.+++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip----~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 16 TSCPQQGLQAVP----VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EECCSSCCSSCC----TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCcCCcccCC----cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 334444455555 22346899999999999888753 7889999999987 5555 6788899999999999985
Q ss_pred CCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecc
Q 003317 570 FLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNV 649 (831)
Q Consensus 570 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~ 649 (831)
.+..++...+.++++|++|++++|.+..+ .+..+.++++|+.|++..+.+..+.. ......++|+.|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQEL-------GPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHG 162 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEE-------CHhHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCC
Confidence 47888555688999999999999887762 34456677777777777554432110 0011123455555555
Q ss_pred ccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEeccc
Q 003317 650 WEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCA 727 (831)
Q Consensus 650 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 727 (831)
+. ...++...+..+++|+.|++++|......+..+. .+++|+.|++++| .+..++. +..+++|+.|++++++
T Consensus 163 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 163 NR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR----DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-ccccCHHHhcCccccCEEECCCCcccccCHhHcc----CcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 43 2333322344555566666655554443333332 2555566665555 3333332 4455555555555543
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=3.4e-15 Score=176.71 Aligned_cols=287 Identities=17% Similarity=0.183 Sum_probs=174.5
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHT 568 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~ 568 (831)
.+...+.+...+| . .-..++++|++++|.+..++.. ..+++|++|++++ +..+ |..+++|++|++|+|++|
T Consensus 8 ~~~cs~~~L~~ip---~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLTQVP---D-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCSSCC---S-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eeECCCCCccccc---c-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 4555555666666 2 1137899999999999998864 8899999999997 5554 678999999999999999
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeec
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLN 648 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~ 648 (831)
.+..+|...++++++|++|++++|.+..+ .+..+.++++|+.|+++.+.+.... +....-.++|+.|+++
T Consensus 84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCTNLTELHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLS 153 (680)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECC
T ss_pred -ccCccChhhhccCCCCCEEECCCCccCcc-------ChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEcc
Confidence 78999987799999999999999988762 2345778888999998866543211 1111123466677766
Q ss_pred cccCCceeeecc--ccCCCCcceeeecCCCCCceeeccccc---------------------------------------
Q 003317 649 VWEHSNWLDVLS--LGELKNLHTLHMQFPFLDDLKFGCVRV--------------------------------------- 687 (831)
Q Consensus 649 ~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------------------- 687 (831)
++.- ....... ...+++|++|++++|....+.+..+..
T Consensus 154 ~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 154 NNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp SSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred CCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 6542 1111111 112345555555555433322211110
Q ss_pred --------CCCCC--CCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccCCCCCCccceecc
Q 003317 688 --------GTHAF--HSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVL 755 (831)
Q Consensus 688 --------~~~~l--~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L 755 (831)
....+ ++|+.|++++|. +..++ +++.+++|+.|++++|. +..++.. .+..+++|+.|++
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L~L 303 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSH-------SLHGLFNVRYLNL 303 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTT-------TTTTCTTCCEEEC
T ss_pred cccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChh-------hhcCCCCccEEec
Confidence 00012 236666666653 33221 35566677777776644 3333221 4566777777777
Q ss_pred ccccccc-----ccCC----CCCCCCCccEEeecCCCCCCCCCCC-Ccc-ccccceEEecc
Q 003317 756 ENLMNLK-----SIYW----SPLPFPQLMEIRVNGCPILQKLPLD-SSS-AKDRKIVIRAK 805 (831)
Q Consensus 756 ~~~~~l~-----~i~~----~~~~~p~L~~L~l~~C~~L~~lp~~-~~~-~~l~~~~i~~~ 805 (831)
+++..-. .++. ....+++|++|++++| ++..++.. ... .+|+.+.+.++
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCC
Confidence 6532111 1221 3345788888888776 45555432 222 25777776643
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=3.3e-15 Score=156.40 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=140.2
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
+.++.+++.+..+|.. ..++|++|++++ +..+| ..++.+++|++|++++| .+..++...+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 5678888888888753 457899999987 66666 46889999999999998 6777754458899999999999886
Q ss_pred -CCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 595 -SSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 595 -~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
+..+ .+..+.++++|+.|++..+.+. ......+..+++|++|+++
T Consensus 92 ~l~~~-------~~~~~~~l~~L~~L~l~~n~l~---------------------------~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 92 QLRSV-------DPATFHGLGRLHTLHLDRCGLQ---------------------------ELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp TCCCC-------CTTTTTTCTTCCEEECTTSCCC---------------------------CCCTTTTTTCTTCCEEECC
T ss_pred Ccccc-------CHHHhcCCcCCCEEECCCCcCC---------------------------EECHhHhhCCcCCCEEECC
Confidence 5541 2445566666666666543321 1111235556677777777
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccc
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLE 751 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~ 751 (831)
+|....++...+. .+++|+.|++++| .++.++. +..+++|+.|+++++. +..+... .+..+++|+
T Consensus 138 ~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~ 204 (285)
T 1ozn_A 138 DNALQALPDDTFR----DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPH-------AFRDLGRLM 204 (285)
T ss_dssp SSCCCCCCTTTTT----TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT-------TTTTCTTCC
T ss_pred CCcccccCHhHhc----cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHh-------HccCccccc
Confidence 7765544433333 3667777777776 3444432 5667777777777754 3433221 456677777
Q ss_pred eecccccccccccCCC-CCCCCCccEEeecCCC
Q 003317 752 YLVLENLMNLKSIYWS-PLPFPQLMEIRVNGCP 783 (831)
Q Consensus 752 ~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~ 783 (831)
.|+++++ .+..++.. ...+++|++|++++++
T Consensus 205 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 7777774 55555432 3456777777777654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=9.5e-16 Score=172.88 Aligned_cols=231 Identities=17% Similarity=0.134 Sum_probs=134.4
Q ss_pred ccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 514 WKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
+.++++|+|++|.+..+++. ..+++|++|+|++ +..+++ ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CCCcCEEE
Confidence 34788888888888776542 6778888888876 444443 777888888888887 5665553 37788888
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeecccc-CCCCcc
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLG-ELKNLH 668 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~ 668 (831)
+++|.+..+ + + ..+++|+.|+++.+.+..+.. ......++|+.|+++++. ........+. .+++|+
T Consensus 106 L~~N~l~~~-----~--~---~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRV-----S--C---SRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (487)
T ss_dssp CCSSCCCCE-----E--E---CCCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CcCCcCCCC-----C--c---cccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCccc
Confidence 888777652 1 1 134566666666555443211 111113456667776655 2222222333 566777
Q ss_pred eeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-CcccccCCCceEEEecccCccccccCCccccccCCCCC
Q 003317 669 TLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-TWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF 747 (831)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 747 (831)
.|++++|....++.. ..+++|+.|+|++|. ++.+ +.+..+++|+.|++++|. +..++. .+..+
T Consensus 173 ~L~Ls~N~l~~~~~~------~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~--------~l~~l 236 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQ------VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEK--------ALRFS 236 (487)
T ss_dssp EEECTTSCCCEEECC------CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECT--------TCCCC
T ss_pred EEecCCCcccccccc------ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccch--------hhccC
Confidence 777777665543211 125667777776663 3333 345666777777777643 445544 45566
Q ss_pred Cccceecccccccc-cccCCCCCCCCCccEEeec
Q 003317 748 AKLEYLVLENLMNL-KSIYWSPLPFPQLMEIRVN 780 (831)
Q Consensus 748 ~~L~~L~L~~~~~l-~~i~~~~~~~p~L~~L~l~ 780 (831)
++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 67777777665433 1233233445666666654
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=2.1e-14 Score=173.59 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=130.7
Q ss_pred ccccccceeEEEecccc-ccccCC--CCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCC-CCh-hhhcC
Q 003317 510 GIERWKGVRKISLMQNQ-IRNLPF--TPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHP-IPS-PLISS 581 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~-i~~lp~--~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~-lp~-~~i~~ 581 (831)
.+..++++++|++++|. +..+++ ..++++|++|+|++ +..+ |..+++|++|++|+|++| .+.. +|. ..+++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence 45566667777777663 334422 26667777777765 4433 566667777777777776 3443 332 23566
Q ss_pred CccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh-----HHHHHh--hccc-----------------
Q 003317 582 FSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR-----ALERFL--SFHK----------------- 637 (831)
Q Consensus 582 L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~-----~l~~l~--~~~~----------------- 637 (831)
|++|++|++++|.+... .....+.+|++|+.|+++.+.+. .+..+. .+..
T Consensus 122 L~~L~~L~Ls~N~l~~~------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSL------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp CSSCCEEEEESCCCCCC------CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred cCCCCEEECCCCccccc------ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 67777777776666541 11234556666666666544331 111110 0000
Q ss_pred cc------ccccceeeccccCCcee-----------------------------------eeccccC--CCCcceeeecC
Q 003317 638 LK------SCTGSLYLNVWEHSNWL-----------------------------------DVLSLGE--LKNLHTLHMQF 674 (831)
Q Consensus 638 l~------~~L~~L~l~~~~~~~~~-----------------------------------~~~~l~~--l~~L~~L~l~~ 674 (831)
.+ ..|+.|+++++.-.... ....+.+ .++|+.|++++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 00 02555666554210000 0000111 24566666666
Q ss_pred CCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCCCceEEEecccCccccccCCccccccCCCCCCccce
Q 003317 675 PFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEY 752 (831)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 752 (831)
|....+.+..+. .+++|+.|+|++|. +..+ + .+..+++|+.|++++|. +..+... .+..+++|+.
T Consensus 276 n~l~~~~~~~~~----~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~ 342 (844)
T 3j0a_A 276 GFVFSLNSRVFE----TLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGELYSS-------NFYGLPKVAY 342 (844)
T ss_dssp CCCCEECSCCSS----SCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCC-CSCCCSC-------SCSSCTTCCE
T ss_pred CcccccChhhhh----cCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCC-CCccCHH-------HhcCCCCCCE
Confidence 655444333333 36677777777663 3332 2 35566777777777643 3333221 4556666666
Q ss_pred ecccccccccccCCC-CCCCCCccEEeecCCCCCCCCC
Q 003317 753 LVLENLMNLKSIYWS-PLPFPQLMEIRVNGCPILQKLP 789 (831)
Q Consensus 753 L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~~L~~lp 789 (831)
|+++++ .+..++.. ...+++|++|++++| .++.+|
T Consensus 343 L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 343 IDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp EECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCS
T ss_pred EECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCccc
Confidence 666664 44444432 344566666666554 344333
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=6.7e-15 Score=172.70 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=61.1
Q ss_pred ecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCC
Q 003317 497 EAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFL 571 (831)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l 571 (831)
..+.++..+| ..+ ..++++|+|++|.+..+|+. ..+++|++|+|++ +..+|+ .+++|++|++|+|++| .+
T Consensus 38 c~~~~l~~vP--~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l 112 (635)
T 4g8a_A 38 CMELNFYKIP--DNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 112 (635)
T ss_dssp CTTSCCSSCC--SSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred CCCCCcCccC--CCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cC
Confidence 3444555555 111 24667777777777776653 6677777777776 555643 4666777777777777 56
Q ss_pred CCCChhhhcCCccCcEeeeccccCCC
Q 003317 572 HPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 572 ~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
+.+|.+++.+|++|++|++++|.+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 66766656677777777777766554
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=5e-15 Score=156.63 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=86.8
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
....+.++++|+++++.+..++....+++|++|++++ +..+|. ++.+++|++|++++| .+..+|. +.++++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchh--hcCCCCCCE
Confidence 3456789999999999999998778899999999998 777777 899999999999999 6888874 899999999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
|++++|.+..+ ..+..+++|+.|+++.+.+.
T Consensus 112 L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 112 LDLTSTQITDV---------TPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp EECTTSCCCCC---------GGGTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCc---------hhhcCCCCCCEEECCCCccC
Confidence 99999987761 23677777777777655443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=2.5e-16 Score=167.61 Aligned_cols=235 Identities=15% Similarity=0.188 Sum_probs=171.8
Q ss_pred ceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 516 GVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
.+...+++.+.+...+.. ..+++|++|++++ +..++ ..++++++|++|+|++| .+..+++ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEEC
Confidence 345556666666544333 5678999999997 55554 68899999999999999 6776665 889999999999
Q ss_pred ccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCccee
Q 003317 591 FNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTL 670 (831)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 670 (831)
++|.+.. +..+++|+.|+++.+.+..+. ....++|+.|+++++. ........+..+++|+.|
T Consensus 88 s~n~l~~------------l~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 88 NNNYVQE------------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp CSSEEEE------------EEECTTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEE
T ss_pred cCCcccc------------ccCCCCcCEEECCCCccCCcC-----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEE
Confidence 9987665 223367788887766554321 1123578999998876 333333356778899999
Q ss_pred eecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCcc
Q 003317 671 HMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKL 750 (831)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L 750 (831)
++++|....+.+..+. ..+++|+.|++++| .++.++....+++|+.|++++| .+..++. .+..+++|
T Consensus 150 ~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L 216 (317)
T 3o53_A 150 DLKLNEIDTVNFAELA---ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGP--------EFQSAAGV 216 (317)
T ss_dssp ECTTSCCCEEEGGGGG---GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECG--------GGGGGTTC
T ss_pred ECCCCCCCcccHHHHh---hccCcCCEEECCCC-cCcccccccccccCCEEECCCC-cCCcchh--------hhcccCcc
Confidence 9999987765554442 13789999999887 5666666667899999999985 4666655 56678999
Q ss_pred ceecccccccccccCCCCCCCCCccEEeecCCCCC
Q 003317 751 EYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPIL 785 (831)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L 785 (831)
+.|+++++ .++.++.....+++|+.|++++|+-.
T Consensus 217 ~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 99999986 77788877778899999999887654
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=9.2e-15 Score=151.76 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=131.1
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
....+++++.|++.++.+..++....+++|++|++++ +..++ .++.+++|++|++++| .+..+|...++++++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 3456688999999999888887778888888888887 55554 6778888888888888 677777766788888888
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+..+ ....+.++++|+.|++..+.+ ..++...+..+++|
T Consensus 114 L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l---------------------------~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 114 LVLVENQLQSL-------PDGVFDKLTNLTYLNLAHNQL---------------------------QSLPKGVFDKLTNL 159 (272)
T ss_dssp EECTTSCCCCC-------CTTTTTTCTTCCEEECCSSCC---------------------------CCCCTTTTTTCTTC
T ss_pred EECCCCcCCcc-------CHHHhccCCCCCEEECCCCcc---------------------------CccCHHHhccCccC
Confidence 88888877652 222344555555555443221 11221234566777
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCC
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLD 745 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~ 745 (831)
+.|++++|....+++..+. .+++|+.|++++|. +..++. +..+++|+.|++++|. ..+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~---------------~~~ 219 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFD----KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP---------------WDC 219 (272)
T ss_dssp CEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC---------------BCC
T ss_pred CEEECCCCCcCccCHHHhc----CCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC---------------ccc
Confidence 7777777765544433332 36777777777763 444432 5667777777777653 223
Q ss_pred CCCccceecccccccccccCCCCCCC
Q 003317 746 PFAKLEYLVLENLMNLKSIYWSPLPF 771 (831)
Q Consensus 746 ~~~~L~~L~L~~~~~l~~i~~~~~~~ 771 (831)
.+|+|+.|.+..+.-...+|...+.+
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCcHHHHHHHHHHhCCCcccCccccc
Confidence 45666766666544334455444333
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=5.4e-15 Score=165.00 Aligned_cols=238 Identities=16% Similarity=0.104 Sum_probs=139.4
Q ss_pred ccceeEEEeccccccccCCC-CCCCCcccccccC---cCccchhhhcCCcc-------------cEEeccCCCCCCCCCh
Q 003317 514 WKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG---INELPRELKALVNL-------------KYLNLDHTTFLHPIPS 576 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~---~~~lp~~i~~L~~L-------------r~L~L~~~~~l~~lp~ 576 (831)
.+++++|++++|.+..+|.. .++++|++|++++ ...+|.+++++.+| ++|++++| .+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 47899999999999999976 8999999999998 45789989888875 99999999 6888886
Q ss_pred hhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCcee
Q 003317 577 PLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWL 656 (831)
Q Consensus 577 ~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~ 656 (831)
+ .++|++|++++|.+..+ +. .+.+|+.|+++.+.+..+. ...++|+.|+++++. ...+
T Consensus 89 --~--~~~L~~L~l~~n~l~~l-----p~------~~~~L~~L~l~~n~l~~l~------~~~~~L~~L~L~~n~-l~~l 146 (454)
T 1jl5_A 89 --L--PPHLESLVASCNSLTEL-----PE------LPQSLKSLLVDNNNLKALS------DLPPLLEYLGVSNNQ-LEKL 146 (454)
T ss_dssp --C--CTTCSEEECCSSCCSSC-----CC------CCTTCCEEECCSSCCSCCC------SCCTTCCEEECCSSC-CSSC
T ss_pred --C--cCCCCEEEccCCcCCcc-----cc------ccCCCcEEECCCCccCccc------CCCCCCCEEECcCCC-CCCC
Confidence 2 47899999999988762 22 2367777887766554322 222578899998876 3334
Q ss_pred eeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccC-
Q 003317 657 DVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISP- 735 (831)
Q Consensus 657 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~- 735 (831)
+ .+..+++|++|++++|....++ . .+++|+.|++++| .+..+|.++.+++|+.|++++|. +..++..
T Consensus 147 p--~~~~l~~L~~L~l~~N~l~~lp-~-------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~ 214 (454)
T 1jl5_A 147 P--ELQNSSFLKIIDVDNNSLKKLP-D-------LPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLP 214 (454)
T ss_dssp C--CCTTCTTCCEEECCSSCCSCCC-C-------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCC
T ss_pred c--ccCCCCCCCEEECCCCcCcccC-C-------CcccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCc
Confidence 4 5778889999999888655432 1 1457888888887 56667777788888888888754 3333220
Q ss_pred ----------CccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCC
Q 003317 736 ----------GKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLD 791 (831)
Q Consensus 736 ----------~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~ 791 (831)
.....++.++.+++|++|+++++ .++.++. .+++|++|++++| +++.+|..
T Consensus 215 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~ 275 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPEL 275 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCC
T ss_pred CcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCcc
Confidence 00001112344555555555553 3444331 2355666666554 35555543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=4.5e-14 Score=162.54 Aligned_cols=230 Identities=19% Similarity=0.142 Sum_probs=170.5
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFL 571 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l 571 (831)
.+...+..+..+| . .++++++|+|++|.+..+|. .+++|++|++++ +..+|. .+.+|++|++++| .+
T Consensus 65 ~L~L~~N~l~~lp---~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l 133 (622)
T 3g06_A 65 TLVIPDNNLTSLP---A--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QL 133 (622)
T ss_dssp EEEECSCCCSCCC---C--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CC
T ss_pred EEEecCCCCCCCC---C--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CC
Confidence 4444555555666 3 56899999999999999987 889999999998 777877 6789999999999 68
Q ss_pred CCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc
Q 003317 572 HPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE 651 (831)
Q Consensus 572 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 651 (831)
..+|.. +++|++|++++|.+..+ +. .+.+|+.|++..+.+..++ ...++|+.|+++++.
T Consensus 134 ~~lp~~----l~~L~~L~Ls~N~l~~l-----~~------~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 134 TSLPVL----PPGLQELSVSDNQLASL-----PA------LPSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQ 192 (622)
T ss_dssp SCCCCC----CTTCCEEECCSSCCSCC-----CC------CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSC
T ss_pred CcCCCC----CCCCCEEECcCCcCCCc-----CC------ccCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCC
Confidence 899873 48999999999988762 22 2355666777666554322 334678889988865
Q ss_pred CCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccc
Q 003317 652 HSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEE 731 (831)
Q Consensus 652 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~ 731 (831)
...++. .+++|+.|++++|....++. .+++|+.|++++| .++.+| ..+++|+.|++++| .+..
T Consensus 193 -l~~l~~----~~~~L~~L~L~~N~l~~l~~--------~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~ 255 (622)
T 3g06_A 193 -LASLPT----LPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTS 255 (622)
T ss_dssp -CSCCCC----CCTTCCEEECCSSCCSSCCC--------CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSC
T ss_pred -CCCCCC----ccchhhEEECcCCcccccCC--------CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCc
Confidence 333321 24788999998886654321 2578999999887 566676 56788999999885 4555
Q ss_pred cccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCCC
Q 003317 732 IISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPI 784 (831)
Q Consensus 732 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~ 784 (831)
++. .+++|+.|+|++| +++.+|.....+++|+.|++++|+-
T Consensus 256 lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 256 LPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 532 5678999999886 6778877777889999999988753
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=4e-14 Score=146.82 Aligned_cols=195 Identities=19% Similarity=0.314 Sum_probs=122.8
Q ss_pred ceeEEEeccccccccCCCCCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 516 GVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
..++++++++.+..+|... .++|+.|++++ +..+|. .++++++|++|++++| .+..+|.+.+.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4667888888888877642 26788888887 666654 6778888888888888 67788877567888888888888
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+..+ ....+.++++|+.|++..+.+ ..++...+..+++|++|++
T Consensus 95 n~l~~~-------~~~~~~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 95 NKLQAL-------PIGVFDQLVNLAELRLDRNQL---------------------------KSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp SCCCCC-------CTTTTTTCSSCCEEECCSSCC---------------------------CCCCTTTTTTCTTCCEEEC
T ss_pred CcCCcC-------CHhHcccccCCCEEECCCCcc---------------------------CeeCHHHhCcCcCCCEEEC
Confidence 876652 223344555555555543221 1111123456677777777
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCcc
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKL 750 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L 750 (831)
++|....++...+. .+++|+.|+|++| .+..++. +..+++|+.|++++| .+..++.. .+..+++|
T Consensus 141 s~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L 207 (270)
T 2o6q_A 141 GYNELQSLPKGVFD----KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-------AFDSLEKL 207 (270)
T ss_dssp CSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTC
T ss_pred CCCcCCccCHhHcc----CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-------HhccccCC
Confidence 77765544433332 3677777777766 3444442 556777777777764 34444331 34556777
Q ss_pred ceecccccc
Q 003317 751 EYLVLENLM 759 (831)
Q Consensus 751 ~~L~L~~~~ 759 (831)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 777776653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=1.3e-15 Score=171.85 Aligned_cols=217 Identities=16% Similarity=0.198 Sum_probs=169.6
Q ss_pred CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhh
Q 003317 534 PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDEL 610 (831)
Q Consensus 534 ~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L 610 (831)
..+++|++|+|++ +..+ |..++.+++|++|+|++| .+..+++ ++.+++|++|++++|.+..+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------------ 95 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQEL------------ 95 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEE------------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCC------------
Confidence 4677999999998 5555 478999999999999999 6777665 89999999999999977652
Q ss_pred cCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCC
Q 003317 611 VQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTH 690 (831)
Q Consensus 611 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 690 (831)
...++|+.|+++.+.+..+.. ...++|+.|+++++.- .......+..+++|+.|++++|......+..+..
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--- 166 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--- 166 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---
T ss_pred CCCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---
Confidence 223778888888766543211 1235799999998763 3333336678899999999999887755555431
Q ss_pred CCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCC
Q 003317 691 AFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLP 770 (831)
Q Consensus 691 ~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~ 770 (831)
.+++|+.|+|++| .++.++....+++|+.|+|++|. +..++. .+..+++|+.|+++++ .+..+|.....
T Consensus 167 ~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~l~~L~~L~Ls~N-~l~~lp~~l~~ 235 (487)
T 3oja_A 167 SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKALRF 235 (487)
T ss_dssp GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTTCCC
T ss_pred hCCcccEEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCH--------hHcCCCCccEEEecCC-cCcccchhhcc
Confidence 3799999999998 56666777789999999999954 666665 5678899999999995 77888877788
Q ss_pred CCCccEEeecCCCCC
Q 003317 771 FPQLMEIRVNGCPIL 785 (831)
Q Consensus 771 ~p~L~~L~l~~C~~L 785 (831)
+++|+.|++++|+-.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 999999999987654
No 73
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.55 E-value=1.5e-14 Score=126.36 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=74.2
Q ss_pred hhhHHHHhHHHhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHHHH
Q 003317 9 LSCDALFTRCLDCCVGRTTYVFNIEDNLVALRTKMDDLIEARNDVMRRVTIAERQQ-MTRLNRVQLWLTRVQGLAIEVDQ 87 (831)
Q Consensus 9 ~~~~~~~~~l~~~~~~e~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~~~d~ed 87 (831)
|+++++++||++++.+|+..+.++++++++|++||+.|+++|.+ |+.++ ...+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988 55552 23478999999999999999999
Q ss_pred HHHhHHHHhhh
Q 003317 88 LQEVKSQEVER 98 (831)
Q Consensus 88 ~ld~~~~~~~~ 98 (831)
++|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988753
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.3e-14 Score=147.61 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=100.8
Q ss_pred CcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc-ccCCCccccccccchhhhcCC
Q 003317 538 DLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN-CKSSSMANVVREVLIDELVQL 613 (831)
Q Consensus 538 ~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L 613 (831)
+|++|++++ +..+|. .++++++|++|++++|..++.+|...+.++++|++|++++ |.+..+ ....+.++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-------~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-------DPDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-------CTTSEECC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-------CHHHhCCC
Confidence 344444443 333333 4455566666666665325555554455666666666655 444431 12233444
Q ss_pred cCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcc---eeeecCC-CCCceeecccccCC
Q 003317 614 DHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLH---TLHMQFP-FLDDLKFGCVRVGT 689 (831)
Q Consensus 614 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~ 689 (831)
++|+.|++..+.+.. ++ .+..+++|+ .|++++| ....++...+.
T Consensus 105 ~~L~~L~l~~n~l~~---------------------------lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--- 152 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM---------------------------FP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQ--- 152 (239)
T ss_dssp TTCCEEEEEEECCCS---------------------------CC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTT---
T ss_pred CCCCEEeCCCCCCcc---------------------------cc--ccccccccccccEEECCCCcchhhcCccccc---
Confidence 444444444332211 11 122233333 6666666 33334333333
Q ss_pred CCCCCcc-EEEEEcCCCCCCCCc-ccccCCCceEEEecccCccccccCCccccccCCCCC-CccceecccccccccccCC
Q 003317 690 HAFHSLH-TVRIYYCSKLRDLTW-LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPF-AKLEYLVLENLMNLKSIYW 766 (831)
Q Consensus 690 ~~l~~L~-~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~i~~ 766 (831)
.+++|+ .|++++| .++.+|. ....++|+.|++++|..++.++.. .+..+ ++|+.|++++ ..++.++.
T Consensus 153 -~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-------~~~~l~~~L~~L~l~~-N~l~~l~~ 222 (239)
T 2xwt_C 153 -GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-------AFGGVYSGPSLLDVSQ-TSVTALPS 222 (239)
T ss_dssp -TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-------TTTTCSBCCSEEECTT-CCCCCCCC
T ss_pred -chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-------HhhccccCCcEEECCC-CccccCCh
Confidence 256666 6766665 3444432 222366777777775445555432 45566 7788888877 35666654
Q ss_pred CCCCCCCccEEeecCCCCC
Q 003317 767 SPLPFPQLMEIRVNGCPIL 785 (831)
Q Consensus 767 ~~~~~p~L~~L~l~~C~~L 785 (831)
. .+++|+.|++.+|+.|
T Consensus 223 ~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 223 K--GLEHLKELIARNTWTL 239 (239)
T ss_dssp T--TCTTCSEEECTTC---
T ss_pred h--HhccCceeeccCccCC
Confidence 3 6778888888777654
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.6e-14 Score=153.13 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=125.8
Q ss_pred CcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe-eeccccCCCccccccccchhhhcCC
Q 003317 538 DLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL-RMFNCKSSSMANVVREVLIDELVQL 613 (831)
Q Consensus 538 ~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L 613 (831)
+++.|+|++ ++.+|. .+.+|++|++|+|++|...+.+|.+++.+|++|+++ .+.++.+..+ .+..+.+|
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-------~~~~f~~l 103 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-------NPEAFQNL 103 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-------CTTSBCCC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-------Cchhhhhc
Confidence 444444443 444443 244555555555555532233444444455544432 2333333331 12233444
Q ss_pred cCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCC-CCcceeeecCCCCCceeecccccCCCCC
Q 003317 614 DHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGEL-KNLHTLHMQFPFLDDLKFGCVRVGTHAF 692 (831)
Q Consensus 614 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l 692 (831)
++|+.|++..+.+..+....... ...+..|++.++.....++...+..+ ..|+.|++++|...+++...+. .
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~--~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-----~ 176 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-----G 176 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCC--BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-----T
T ss_pred cccccccccccccccCCchhhcc--cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-----c
Confidence 45555555444332211110000 11344455554444444443344444 3688899998877666554443 5
Q ss_pred CCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCC
Q 003317 693 HSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLP 770 (831)
Q Consensus 693 ~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~ 770 (831)
.+|+.|.+.+++.++.+|. +..+++|+.|+++++ .++.++. ..|.+|+.|.+.++.+++.+| ....
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----------YGLENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----------SSCTTCCEEECTTCTTCCCCC-CTTT
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----------hhhccchHhhhccCCCcCcCC-Cchh
Confidence 6789999988878888874 678999999999984 5777754 457788888888888888888 4667
Q ss_pred CCCccEEeecC
Q 003317 771 FPQLMEIRVNG 781 (831)
Q Consensus 771 ~p~L~~L~l~~ 781 (831)
+++|+.+++.+
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 89999998864
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=1.5e-14 Score=153.37 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=102.5
Q ss_pred ccceeEEEeccccccc-cCCC---CCCCCcccccccC--cCccchhhhcC-----CcccEEeccCCCCCCCCChhhhcCC
Q 003317 514 WKGVRKISLMQNQIRN-LPFT---PICPDLQTLFLKG--INELPRELKAL-----VNLKYLNLDHTTFLHPIPSPLISSF 582 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~-lp~~---~~~~~Lr~L~L~~--~~~lp~~i~~L-----~~Lr~L~L~~~~~l~~lp~~~i~~L 582 (831)
+.++++|++++|.+.. +|.. ..+++|++|++++ +..+|..++.+ ++|++|++++| .+..+|...++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccC
Confidence 4556666666666552 3332 4555566666655 44445555544 55666666655 4555553345556
Q ss_pred ccCcEeeeccccCCCccccccccchhhh--cCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeecc
Q 003317 583 SMLLVLRMFNCKSSSMANVVREVLIDEL--VQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLS 660 (831)
Q Consensus 583 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~ 660 (831)
++|++|++++|.+.. ....+..+ .++++|+.|+++.+.+..+..+. ...
T Consensus 173 ~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~ 223 (312)
T 1wwl_A 173 PALSTLDLSDNPELG-----ERGLISALCPLKFPTLQVLALRNAGMETPSGVC------------------------SAL 223 (312)
T ss_dssp SSCCEEECCSCTTCH-----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH------------------------HHH
T ss_pred CCCCEEECCCCCcCc-----chHHHHHHHhccCCCCCEEECCCCcCcchHHHH------------------------HHH
Confidence 666666665555432 00112222 44444444444433333222111 012
Q ss_pred ccCCCCcceeeecCCCCCcee-ecccccCCCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEecccCccccccCCcc
Q 003317 661 LGELKNLHTLHMQFPFLDDLK-FGCVRVGTHAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVSTCANMEEIISPGKI 738 (831)
Q Consensus 661 l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~ 738 (831)
+..+++|+.|++++|...... ...+ ..+++|+.|++++| .++.+|. +. ++|+.|+++++ .++.++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p----- 290 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSC----DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNP----- 290 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCC----CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCC-----
T ss_pred HhcCCCCCEEECCCCcCCcccchhhh----hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCCh-----
Confidence 234567777777777655422 1222 12567777777776 3445543 32 67777777774 355442
Q ss_pred ccccCCCCCCccceeccccc
Q 003317 739 SQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 739 ~~~~~~~~~~~L~~L~L~~~ 758 (831)
.+..+++|++|+++++
T Consensus 291 ----~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 291 ----SPDELPQVGNLSLKGN 306 (312)
T ss_dssp ----CTTTSCEEEEEECTTC
T ss_pred ----hHhhCCCCCEEeccCC
Confidence 3456777777777764
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=9.2e-14 Score=155.01 Aligned_cols=175 Identities=23% Similarity=0.223 Sum_probs=106.6
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
.++++|++++|.+..++... ++|++|++++ +..+| .++++++|++|++++| .+..+|.. + .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~-~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL-P---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC-C---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCC-c---ccccEEECcC
Confidence 55666666666666554332 5677777776 55666 4777777777777777 56666652 2 4777777777
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+.. . + .+.++++|+.|++..+.+..++ ....+|+.|+++++. ...++ .+..+++|++|++
T Consensus 183 n~l~~-----l---~-~~~~l~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~n~-l~~lp--~~~~l~~L~~L~l 244 (454)
T 1jl5_A 183 NQLEE-----L---P-ELQNLPFLTAIYADNNSLKKLP------DLPLSLESIVAGNNI-LEELP--ELQNLPFLTTIYA 244 (454)
T ss_dssp SCCSS-----C---C-CCTTCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSC-CSSCC--CCTTCTTCCEEEC
T ss_pred CcCCc-----C---c-cccCCCCCCEEECCCCcCCcCC------CCcCcccEEECcCCc-CCccc--ccCCCCCCCEEEC
Confidence 76665 1 1 4677777888877766544322 223478888888775 33343 4667788888888
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecc
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTC 726 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 726 (831)
++|....++. .+++|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 245 ~~N~l~~l~~--------~~~~L~~L~l~~N-~l~~l~~~--~~~L~~L~ls~N 287 (454)
T 1jl5_A 245 DNNLLKTLPD--------LPPSLEALNVRDN-YLTDLPEL--PQSLTFLDVSEN 287 (454)
T ss_dssp CSSCCSSCCS--------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS
T ss_pred CCCcCCcccc--------cccccCEEECCCC-cccccCcc--cCcCCEEECcCC
Confidence 8876544321 1355666666655 33333321 245555555543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.1e-13 Score=143.39 Aligned_cols=195 Identities=17% Similarity=0.247 Sum_probs=145.8
Q ss_pred CcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcC
Q 003317 538 DLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDH 615 (831)
Q Consensus 538 ~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~ 615 (831)
+++++++++ +..+|..+. .+|++|++++| .+..+|...+.++++|++|++++|.+..+ ....+.++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-------~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTL-------PAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCC-------CTTTTSSCTT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCee-------ChhhhcCCCC
Confidence 467888876 777887554 68999999999 68888876689999999999999887762 1223455666
Q ss_pred CCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCc
Q 003317 616 LNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSL 695 (831)
Q Consensus 616 L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 695 (831)
|+.|+++.+.+ ..++...+..+++|++|++++|....+++..+. .+++|
T Consensus 87 L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L 135 (270)
T 2o6q_A 87 LETLWVTDNKL---------------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----SLTKL 135 (270)
T ss_dssp CCEEECCSSCC---------------------------CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----TCTTC
T ss_pred CCEEECCCCcC---------------------------CcCCHhHcccccCCCEEECCCCccCeeCHHHhC----cCcCC
Confidence 66666653321 122222466789999999999987766555444 48999
Q ss_pred cEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCC-CCCCC
Q 003317 696 HTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWS-PLPFP 772 (831)
Q Consensus 696 ~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p 772 (831)
+.|+|++| .+..++. +..+++|+.|++++|. +..++.. .+..+++|+.|+++++ .++.++.. ...++
T Consensus 136 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 136 TYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEG-------AFDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205 (270)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred CEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeChh-------HhccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence 99999998 5666654 7889999999999854 6655442 4678899999999996 77777754 45689
Q ss_pred CccEEeecCCC
Q 003317 773 QLMEIRVNGCP 783 (831)
Q Consensus 773 ~L~~L~l~~C~ 783 (831)
+|+.|+++++|
T Consensus 206 ~L~~L~l~~N~ 216 (270)
T 2o6q_A 206 KLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEecCCC
Confidence 99999998875
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=4.9e-15 Score=157.17 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=127.0
Q ss_pred cccceeEEEeccccccccCCC-CCCCCcccccccC--c--Cccchhhh-------cCCcccEEeccCCCCCC-CCChhhh
Q 003317 513 RWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--I--NELPRELK-------ALVNLKYLNLDHTTFLH-PIPSPLI 579 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~--~~lp~~i~-------~L~~Lr~L~L~~~~~l~-~lp~~~i 579 (831)
...+++++++++|.+ .+|.. ... |++|++++ + ..+|..+. ++++|++|++++| .+. .+|.. +
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPP-L 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCC-S
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHH-H
Confidence 345677777777777 55553 222 77888776 2 23566665 7888888888888 454 57765 4
Q ss_pred --cCCccCcEeeeccccCCCccccccccchhhhcCC--cCCCceeEeecchhHHHHHhhcccccccccceeeccccCCce
Q 003317 580 --SSFSMLLVLRMFNCKSSSMANVVREVLIDELVQL--DHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNW 655 (831)
Q Consensus 580 --~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L--~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~ 655 (831)
+.+++|++|++++|.+.. .+..+..+... ++|+.|+++.+.+..+. +......++|+.|+++++.-...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWAT-----RDAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSS-----SSSHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHhcCCCccEEEccCCCCcc-----hhHHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCCEEECCCCCcCcc
Confidence 788888888888888776 22223333221 66666666655443211 01111123555555555442111
Q ss_pred ee---eccccCCCCcceeeecCCCCCce---eecccccCCCCCCCccEEEEEcCCCCCC-C--CcccccCCCceEEEecc
Q 003317 656 LD---VLSLGELKNLHTLHMQFPFLDDL---KFGCVRVGTHAFHSLHTVRIYYCSKLRD-L--TWLALAPNVRNIGVSTC 726 (831)
Q Consensus 656 ~~---~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~c 726 (831)
.. ...+..+++|++|++++|....+ ....+. .+++|+.|++++|. +.. . +.+..+++|+.|++++|
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA----ARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH----TTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh----cCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC
Confidence 10 00124555666666666654421 111111 24566666666553 332 2 22334566666666653
Q ss_pred cCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCC
Q 003317 727 ANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGC 782 (831)
Q Consensus 727 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C 782 (831)
. ++.++. .+. ++|++|+++++ +++.+|. ...+++|++|+++++
T Consensus 264 ~-l~~ip~--------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 264 G-LKQVPK--------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CSSCCS--------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred c-cChhhh--------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 3 344433 222 56666666653 4555543 445566666666553
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=4.9e-14 Score=149.01 Aligned_cols=177 Identities=18% Similarity=0.228 Sum_probs=96.0
Q ss_pred eccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCcc
Q 003317 522 LMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMA 599 (831)
Q Consensus 522 l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 599 (831)
+..+.+..+.....+++|++|++++ +..+| .+..+++|++|++++| .+..+|. +.++++|++|++++|.+..
T Consensus 26 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~-- 99 (308)
T 1h6u_A 26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKN-- 99 (308)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSC--
T ss_pred hCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCC--
Confidence 3344444433335677888888876 56666 5777888888888888 6777776 7788888888888887665
Q ss_pred ccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc
Q 003317 600 NVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD 679 (831)
Q Consensus 600 ~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 679 (831)
+..+.++++|+.|+++.+.+..+..+ ...++|+.|+++++. ...++ .+..+++|+.|++++|....
T Consensus 100 -------~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 100 -------VSAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQ-ITNIS--PLAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp -------CGGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred -------chhhcCCCCCCEEECCCCCCCCchhh----cCCCCCCEEECCCCc-cCcCc--cccCCCCccEEEccCCcCCC
Confidence 12466666666666665444332211 112244455554443 11111 23344455555555443332
Q ss_pred eeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEec
Q 003317 680 LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVST 725 (831)
Q Consensus 680 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 725 (831)
++. +. .+++|+.|++++| .+..++.+..+++|+.|++++
T Consensus 166 ~~~--l~----~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 166 LTP--LA----NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKN 204 (308)
T ss_dssp CGG--GT----TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTT
T ss_pred Chh--hc----CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccC
Confidence 211 11 2444555555444 334444444445555555544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=1.1e-13 Score=143.99 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=17.8
Q ss_pred CccceecccccccccccCCCC-CCCCCccEEeecC
Q 003317 748 AKLEYLVLENLMNLKSIYWSP-LPFPQLMEIRVNG 781 (831)
Q Consensus 748 ~~L~~L~L~~~~~l~~i~~~~-~~~p~L~~L~l~~ 781 (831)
++|+.|+++++ .++.++... ..+++|++|++++
T Consensus 200 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 200 IRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred CcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 35666666654 355554332 3456666666654
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=9.9e-14 Score=162.72 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=103.7
Q ss_pred ccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCC-C-cccccCC
Q 003317 640 SCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDL-T-WLALAPN 717 (831)
Q Consensus 640 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~ 717 (831)
..|+.+++..+......+...+..+++|+.++++.|......+..+. .+++|+.|++++|.....+ | .+..+++
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccc----cchhhhhhhhhhcccccccCchhhhhccc
Confidence 35666666655432222333566788999999998876554444333 4789999999988644432 3 4778999
Q ss_pred CceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCC-CCCCCCccEEeecCCCCCCCCCCC-Cccc
Q 003317 718 VRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVNGCPILQKLPLD-SSSA 795 (831)
Q Consensus 718 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~~L~~lp~~-~~~~ 795 (831)
|+.|+|++|. +..+++. .+.++++|+.|+|+++ +++.++.. ...+++|+.|+++++ +++.+|.. ..+.
T Consensus 496 L~~L~Ls~N~-L~~l~~~-------~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l 565 (635)
T 4g8a_A 496 LTFLDLSQCQ-LEQLSPT-------AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHF 565 (635)
T ss_dssp CCEEECTTSC-CCEECTT-------TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCC
T ss_pred cCEEECCCCc-cCCcChH-------HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhh
Confidence 9999999964 6666442 6788999999999995 77777643 466899999999885 66666543 3332
Q ss_pred --cccceEEe
Q 003317 796 --KDRKIVIR 803 (831)
Q Consensus 796 --~l~~~~i~ 803 (831)
+|+.+.+.
T Consensus 566 ~~~L~~L~L~ 575 (635)
T 4g8a_A 566 PSSLAFLNLT 575 (635)
T ss_dssp CTTCCEEECT
T ss_pred hCcCCEEEee
Confidence 56667663
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.50 E-value=6.3e-14 Score=142.42 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=148.1
Q ss_pred CcCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc-CCCccccccccchhhhcCCcCCCceeEee-
Q 003317 546 GINELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK-SSSMANVVREVLIDELVQLDHLNELSMSL- 623 (831)
Q Consensus 546 ~~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~~L~~L~i~~- 623 (831)
++..+|. +. .+|++|++++| .++.+|...+.++++|++|++++|. +..+ ....+.++++|+.|++..
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-------~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-------ESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEE-------CTTTEESCTTCCEEEEEEE
T ss_pred CccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCccee-------CHhHcCCCcCCcEEECCCC
Confidence 3566776 43 38999999999 7899998779999999999999996 6552 223455666666666653
Q ss_pred cchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCcc---EEEE
Q 003317 624 HSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLH---TVRI 700 (831)
Q Consensus 624 ~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~---~L~L 700 (831)
+. ...++...+..+++|++|++++|....++. +. .+++|+ .|++
T Consensus 91 n~---------------------------l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~----~l~~L~~L~~L~l 137 (239)
T 2xwt_C 91 RN---------------------------LTYIDPDALKELPLLKFLGIFNTGLKMFPD--LT----KVYSTDIFFILEI 137 (239)
T ss_dssp TT---------------------------CCEECTTSEECCTTCCEEEEEEECCCSCCC--CT----TCCBCCSEEEEEE
T ss_pred CC---------------------------eeEcCHHHhCCCCCCCEEeCCCCCCccccc--cc----cccccccccEEEC
Confidence 22 222332356678999999999997766432 32 356666 9999
Q ss_pred EcCCCCCCCCc--ccccCCCc-eEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCC-CCCC-CCcc
Q 003317 701 YYCSKLRDLTW--LALAPNVR-NIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWS-PLPF-PQLM 775 (831)
Q Consensus 701 ~~c~~l~~l~~--l~~l~~L~-~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~-p~L~ 775 (831)
++|+.++.++. +..+++|+ .|+++++ .+..++.. .+.. ++|+.|++++++.++.++.. ...+ ++|+
T Consensus 138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp ESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred CCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 99866777664 78899999 9999985 46676552 2333 79999999998778888754 4567 9999
Q ss_pred EEeecCCCCCCCCCCCCccccccceEEe
Q 003317 776 EIRVNGCPILQKLPLDSSSAKDRKIVIR 803 (831)
Q Consensus 776 ~L~l~~C~~L~~lp~~~~~~~l~~~~i~ 803 (831)
.|++++ .+++.+|.... ..++.+.+.
T Consensus 209 ~L~l~~-N~l~~l~~~~~-~~L~~L~l~ 234 (239)
T 2xwt_C 209 LLDVSQ-TSVTALPSKGL-EHLKELIAR 234 (239)
T ss_dssp EEECTT-CCCCCCCCTTC-TTCSEEECT
T ss_pred EEECCC-CccccCChhHh-ccCceeecc
Confidence 999998 57889998622 257777766
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=1.5e-14 Score=150.21 Aligned_cols=222 Identities=16% Similarity=0.186 Sum_probs=136.3
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
.++..+++..+.+........+++|+.|++++ +..++ .++.+++|++|++++| .+..+|. ++++++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCC
Confidence 34444455555554444445667777777766 44443 4667777777777777 4666553 67777777777777
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+..+ ....+.++++|+.|++. ++. ...+....+..+++|++|++
T Consensus 95 n~l~~~-------~~~~~~~l~~L~~L~L~--------------------------~n~-l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 95 NQLQSL-------PNGVFDKLTNLKELVLV--------------------------ENQ-LQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp SCCCCC-------CTTTTTTCTTCCEEECT--------------------------TSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CccCcc-------ChhHhcCCcCCCEEECC--------------------------CCc-CCccCHHHhccCCCCCEEEC
Confidence 766541 12223444444444443 332 12222224667788888888
Q ss_pred cCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCcc
Q 003317 673 QFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKL 750 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L 750 (831)
++|....+++..+. .+++|+.|++++| .++.++. ++.+++|+.|++++|. +..++.. .+..+++|
T Consensus 141 ~~n~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L 207 (272)
T 3rfs_A 141 AHNQLQSLPKGVFD----KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG-------VFDRLTSL 207 (272)
T ss_dssp CSSCCCCCCTTTTT----TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-------TTTTCTTC
T ss_pred CCCccCccCHHHhc----cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccCHH-------HHhCCcCC
Confidence 88866655444443 3788888888887 4555554 6778888888888854 5544431 46778888
Q ss_pred ceecccccccccccCCCCCCCCCccEEeecCCCCCCCCCCCCcc
Q 003317 751 EYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCPILQKLPLDSSS 794 (831)
Q Consensus 751 ~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~~L~~lp~~~~~ 794 (831)
+.|++++++-. +.+|+|+.|.+..+.--..+|.....
T Consensus 208 ~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 208 QYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 88888886321 34677887777765444456655443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.5e-13 Score=143.85 Aligned_cols=195 Identities=18% Similarity=0.146 Sum_probs=121.3
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
+..+.+++.++++++.+..+|... .+++++|++++ +..+ |..+..+++|++|+|++| .+..+|. .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCE
Confidence 455678889999999988887642 36888888887 5555 467888888888888888 6777776 478888888
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+.. .+..+..+++|+.|+++.+.+. .++...+..+++|
T Consensus 82 L~Ls~N~l~~--------l~~~~~~l~~L~~L~l~~N~l~---------------------------~l~~~~~~~l~~L 126 (290)
T 1p9a_G 82 LDLSHNQLQS--------LPLLGQTLPALTVLDVSFNRLT---------------------------SLPLGALRGLGEL 126 (290)
T ss_dssp EECCSSCCSS--------CCCCTTTCTTCCEEECCSSCCC---------------------------CCCSSTTTTCTTC
T ss_pred EECCCCcCCc--------CchhhccCCCCCEEECCCCcCc---------------------------ccCHHHHcCCCCC
Confidence 8888887765 2233455566666665544322 1111234555666
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCC
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLD 745 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~ 745 (831)
++|++++|....++...+. .+++|+.|+|++| .++.+|. +..+++|+.|+++++ .+..++. .+.
T Consensus 127 ~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~--------~~~ 192 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLT----PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPK--------GFF 192 (290)
T ss_dssp CEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCT--------TTT
T ss_pred CEEECCCCCCCccChhhcc----cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccCh--------hhc
Confidence 6666666655444333332 2566666666665 3444443 345666666666653 3445544 334
Q ss_pred CCCccceeccccc
Q 003317 746 PFAKLEYLVLENL 758 (831)
Q Consensus 746 ~~~~L~~L~L~~~ 758 (831)
.+++|+.|.|.++
T Consensus 193 ~~~~L~~l~L~~N 205 (290)
T 1p9a_G 193 GSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCCSEEECCSC
T ss_pred ccccCCeEEeCCC
Confidence 4456666666543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.4e-13 Score=143.12 Aligned_cols=197 Identities=18% Similarity=0.219 Sum_probs=120.6
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLR 589 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~ 589 (831)
.++++|++++|.+..++.. ..+++|++|++++ +..+|. .++++++|++|++++| .+..+|...+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 5789999999998887753 7788899998887 556554 6788888999999888 57777755688888999999
Q ss_pred eccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 590 MFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
+++|.+..+ ....+.++++|+.|+++.+.+..+. ++ ..+..+++|++
T Consensus 107 l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------l~-~~~~~l~~L~~ 153 (276)
T 2z62_A 107 AVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFK-------------------------LP-EYFSNLTNLEH 153 (276)
T ss_dssp CTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCC-------------------------CC-GGGGGCTTCCE
T ss_pred CCCCCcccc-------CchhcccCCCCCEEECcCCccceec-------------------------Cc-hhhccCCCCCE
Confidence 888877652 1223556666666666544322100 01 13445566666
Q ss_pred eeecCCCCCceeecccccCCCCCCCcc----EEEEEcCCCCCCCC-cccccCCCceEEEecccCccccccCCccccccCC
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLH----TVRIYYCSKLRDLT-WLALAPNVRNIGVSTCANMEEIISPGKISQVQNL 744 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~----~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~ 744 (831)
|++++|....++...+.. +++|+ .|++++| .+..++ ......+|+.|++++|. +..++.. .+
T Consensus 154 L~Ls~N~l~~~~~~~~~~----l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-------~~ 220 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRV----LHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDG-------IF 220 (276)
T ss_dssp EECCSSCCCEECGGGGHH----HHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTT-------TT
T ss_pred EECCCCCCCcCCHHHhhh----hhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHh-------Hh
Confidence 666666555443333321 33333 5666555 233332 23334466666666643 4444331 34
Q ss_pred CCCCccceeccccc
Q 003317 745 DPFAKLEYLVLENL 758 (831)
Q Consensus 745 ~~~~~L~~L~L~~~ 758 (831)
..+++|+.|+++++
T Consensus 221 ~~l~~L~~L~l~~N 234 (276)
T 2z62_A 221 DRLTSLQKIWLHTN 234 (276)
T ss_dssp TTCCSCCEEECCSS
T ss_pred cccccccEEEccCC
Confidence 55666666666654
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.4e-13 Score=144.03 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=128.5
Q ss_pred CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhc
Q 003317 534 PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELV 611 (831)
Q Consensus 534 ~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 611 (831)
.++++++.+++++ +..+|..+. ++|++|+|++| .+..++...+.++++|++|++++|.+..+ +. ..
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~----~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKL-----QV----DG 74 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEE-----EC----CS
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcc-----cC----CC
Confidence 3455666666665 555665443 46666666666 45555544466666666666666655541 11 13
Q ss_pred CCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCC
Q 003317 612 QLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHA 691 (831)
Q Consensus 612 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 691 (831)
.+++|+. |+++++. ...++. .+..+++|+.|++++|....+++..+. .
T Consensus 75 ~l~~L~~--------------------------L~Ls~N~-l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~----~ 122 (290)
T 1p9a_G 75 TLPVLGT--------------------------LDLSHNQ-LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR----G 122 (290)
T ss_dssp CCTTCCE--------------------------EECCSSC-CSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTT----T
T ss_pred CCCcCCE--------------------------EECCCCc-CCcCch-hhccCCCCCEEECCCCcCcccCHHHHc----C
Confidence 3444444 4444433 222221 456778899999999877766555554 3
Q ss_pred CCCccEEEEEcCCCCCCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCC
Q 003317 692 FHSLHTVRIYYCSKLRDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPL 769 (831)
Q Consensus 692 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 769 (831)
+++|+.|+|++| .++.++. +..+++|+.|+++++ .+..++.. .+..+++|+.|+++++ .++.+|....
T Consensus 123 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-------~~~~l~~L~~L~L~~N-~l~~ip~~~~ 192 (290)
T 1p9a_G 123 LGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-------LLNGLENLDTLLLQEN-SLYTIPKGFF 192 (290)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-------TTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-------HhcCcCCCCEEECCCC-cCCccChhhc
Confidence 889999999887 5666654 568899999999885 46666542 4567889999999885 7778887777
Q ss_pred CCCCccEEeecCCC
Q 003317 770 PFPQLMEIRVNGCP 783 (831)
Q Consensus 770 ~~p~L~~L~l~~C~ 783 (831)
.+++|+.|++.++|
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 78889999988755
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=1.9e-13 Score=143.08 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=122.6
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
....+.++++|++++|.+..++....+++|++|++++ +..+|. ++++++|++|++++| .+..+|. +.++++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh--hccCCCCCE
Confidence 3456788999999999998887778888888888887 666666 888888888888888 5777765 788888888
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+.. +..+.++++|+.|+++.+.+. .+ ..+..+++|
T Consensus 117 L~L~~n~i~~---------~~~l~~l~~L~~L~l~~n~l~---------------------------~~--~~l~~l~~L 158 (291)
T 1h6t_A 117 LSLEHNGISD---------INGLVHLPQLESLYLGNNKIT---------------------------DI--TVLSRLTKL 158 (291)
T ss_dssp EECTTSCCCC---------CGGGGGCTTCCEEECCSSCCC---------------------------CC--GGGGGCTTC
T ss_pred EECCCCcCCC---------ChhhcCCCCCCEEEccCCcCC---------------------------cc--hhhccCCCC
Confidence 8888887665 134555555555555433221 11 245567788
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEeccc
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCA 727 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 727 (831)
+.|++++|....+++ +. .+++|+.|++++| .++.++.+..+++|+.|+++++.
T Consensus 159 ~~L~L~~N~l~~~~~--l~----~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP--LA----GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CEEEccCCccccchh--hc----CCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 888888886655432 32 3788888888887 56677777888888888888754
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.7e-13 Score=157.49 Aligned_cols=170 Identities=22% Similarity=0.296 Sum_probs=121.2
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
....+.+++.|++++|.+..++....+++|+.|+|++ +..+|. ++.|++|++|+|++| .+..+|. ++.|++|++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~ 113 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKS 113 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCCCE
Confidence 3455678888888888888887777888888888887 666665 788888888888888 6777774 788888888
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+.. +..+..|++|+.|+++.+.+. .+ ..+..+++|
T Consensus 114 L~Ls~N~l~~---------l~~l~~l~~L~~L~Ls~N~l~---------------------------~l--~~l~~l~~L 155 (605)
T 1m9s_A 114 LSLEHNGISD---------INGLVHLPQLESLYLGNNKIT---------------------------DI--TVLSRLTKL 155 (605)
T ss_dssp EECTTSCCCC---------CGGGGGCTTCSEEECCSSCCC---------------------------CC--GGGGSCTTC
T ss_pred EEecCCCCCC---------CccccCCCccCEEECCCCccC---------------------------Cc--hhhcccCCC
Confidence 8888887665 233555666666665533322 11 245567788
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccC
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCAN 728 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~ 728 (831)
+.|+|++|....+.+ +. .+++|+.|+|++| .+..++.+..+++|+.|+|++|..
T Consensus 156 ~~L~Ls~N~l~~~~~--l~----~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 156 DTLSLEDNQISDIVP--LA----GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SEEECCSSCCCCCGG--GT----TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEE
T ss_pred CEEECcCCcCCCchh--hc----cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcC
Confidence 888888876655433 32 3778888888887 566677777888888888887653
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.8e-14 Score=154.74 Aligned_cols=199 Identities=18% Similarity=0.169 Sum_probs=107.8
Q ss_pred cceeEEEeccccccccCCC-CCCCCcccccccC--cC-c-cchhhhcCCcccEEeccCCCCCC-CCChhhhcCCccCcEe
Q 003317 515 KGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--IN-E-LPRELKALVNLKYLNLDHTTFLH-PIPSPLISSFSMLLVL 588 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~-~-lp~~i~~L~~Lr~L~L~~~~~l~-~lp~~~i~~L~~L~~L 588 (831)
.+++++++++|.+...+.. ..+++|++|++++ +. . +|..+..+++|++|++++| .+. ..|. .++++++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHH-HHhcCCCCCEE
Confidence 5677777777776654433 5667777777766 22 1 5566666777777777776 343 3343 36666777777
Q ss_pred eecccc-CCCccccccccchhhhcCCcCCCceeEeec-chhHHHHHhhcccccccccceeeccccCCceeeeccccCCC-
Q 003317 589 RMFNCK-SSSMANVVREVLIDELVQLDHLNELSMSLH-SIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELK- 665 (831)
Q Consensus 589 ~l~~~~-~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~-~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~- 665 (831)
++++|. +.. ......+.++++|+.|++..+ .+... . +. ..+..++
T Consensus 148 ~L~~~~~l~~------~~l~~~~~~~~~L~~L~l~~~~~l~~~-~------------------------~~-~~~~~l~~ 195 (336)
T 2ast_B 148 NLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFDFTEK-H------------------------VQ-VAVAHVSE 195 (336)
T ss_dssp ECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTTCCHH-H------------------------HH-HHHHHSCT
T ss_pred ECCCCCCCCH------HHHHHHHhcCCCCCEEcCCCCCCcChH-H------------------------HH-HHHHhccc
Confidence 776663 321 112223444555555555433 22210 0 00 1233455
Q ss_pred CcceeeecCCC--CCc-eeecccccCCCCCCCccEEEEEcCCCCCC--CCcccccCCCceEEEecccCccccccCCcccc
Q 003317 666 NLHTLHMQFPF--LDD-LKFGCVRVGTHAFHSLHTVRIYYCSKLRD--LTWLALAPNVRNIGVSTCANMEEIISPGKISQ 740 (831)
Q Consensus 666 ~L~~L~l~~~~--~~~-~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 740 (831)
+|++|++++|. ... ..+..+. .+++|+.|++++|..++. ++.+..+++|+.|++++|..+.....
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------ 265 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------ 265 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------
T ss_pred CCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH------
Confidence 67777777663 221 1111222 267777777777754332 34566777777777777653322110
Q ss_pred ccCCCCCCccceeccccc
Q 003317 741 VQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 741 ~~~~~~~~~L~~L~L~~~ 758 (831)
..+..+++|+.|++++|
T Consensus 266 -~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 -LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -GGGGGCTTCCEEECTTS
T ss_pred -HHHhcCCCCCEEeccCc
Confidence 03456777777777776
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=6.6e-13 Score=143.14 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=161.8
Q ss_pred cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCce-eEeecc
Q 003317 547 INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNEL-SMSLHS 625 (831)
Q Consensus 547 ~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L-~i~~~~ 625 (831)
++++|..+ .++|++|+|++| .|+.+|.+++.+|++|++|++++|.+... .....+.+|++|..+ ....+.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~------i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEV------IEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCE------ECTTSBCSCTTCCEEEEEEETT
T ss_pred CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCc------cChhHhhcchhhhhhhcccCCc
Confidence 56667655 368999999999 79999988789999999999999987651 112334566666543 333333
Q ss_pred hhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc-eeecccccCCCCCCCccEEEEEcCC
Q 003317 626 IRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD-LKFGCVRVGTHAFHSLHTVRIYYCS 704 (831)
Q Consensus 626 ~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~c~ 704 (831)
+..+. +......++|+.|+++++. ...++...+....++..|++.++..+. ++...+.. ....++.|++++|
T Consensus 92 l~~l~--~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~---~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 92 LLYIN--PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---LSFESVILWLNKN- 164 (350)
T ss_dssp CCEEC--TTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT---SBSSCEEEECCSS-
T ss_pred ccccC--chhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhh---cchhhhhhccccc-
Confidence 33221 1112234579999998876 333332234455677888887765554 44444331 2346889999887
Q ss_pred CCCCCCc-ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCCC
Q 003317 705 KLRDLTW-LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 705 ~l~~l~~-l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
.++.++. ....++|+.|.+.+++.++.++.. .+..+++|+.|+++++ +++.+|. ..+.+|+.|.+.+|+
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-------~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-------VFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTY 234 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-------TTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCT
T ss_pred cccCCChhhccccchhHHhhccCCcccCCCHH-------HhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCC
Confidence 5666653 446678999999988999988763 5678999999999995 7888874 458899999999999
Q ss_pred CCCCCCCCCccccccceEEe
Q 003317 784 ILQKLPLDSSSAKDRKIVIR 803 (831)
Q Consensus 784 ~L~~lp~~~~~~~l~~~~i~ 803 (831)
+++.+|.-..-.+|+.+.+.
T Consensus 235 ~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 235 NLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TCCCCCCTTTCCSCCEEECS
T ss_pred CcCcCCCchhCcChhhCcCC
Confidence 99999964433366766664
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.1e-13 Score=148.54 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=84.1
Q ss_pred ccccccceeEEEeccccccc--cCCC-CCCCCcccccccC--cC-ccchhhhcCCcccEEeccCCCCCCC--CChhhhcC
Q 003317 510 GIERWKGVRKISLMQNQIRN--LPFT-PICPDLQTLFLKG--IN-ELPRELKALVNLKYLNLDHTTFLHP--IPSPLISS 581 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~--lp~~-~~~~~Lr~L~L~~--~~-~lp~~i~~L~~Lr~L~L~~~~~l~~--lp~~~i~~ 581 (831)
.+..+.++++|++++|.+.. ++.. ..+++|++|++++ +. ..|..++.+++|++|++++|..+.. +|. .+.+
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~ 166 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSS 166 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhc
Confidence 34567899999999998764 4444 7899999999998 33 4678899999999999999955663 665 4889
Q ss_pred CccCcEeeeccc-cCCCccccccccchhhhcCCc-CCCceeEeec
Q 003317 582 FSMLLVLRMFNC-KSSSMANVVREVLIDELVQLD-HLNELSMSLH 624 (831)
Q Consensus 582 L~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~-~L~~L~i~~~ 624 (831)
+++|++|++++| .+.. ......+.+++ +|+.|++..+
T Consensus 167 ~~~L~~L~l~~~~~l~~------~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCEEcCCCCCCcCh------HHHHHHHHhcccCCCEEEeCCC
Confidence 999999999999 6654 12345567777 8888877755
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=7.1e-13 Score=140.38 Aligned_cols=201 Identities=11% Similarity=0.092 Sum_probs=104.0
Q ss_pred cceeEEEeccccccccCC-C---CCCCCcccccccC--cCc-cc----hhhhcCCcccEEeccCCCCCCCCChhhhcCCc
Q 003317 515 KGVRKISLMQNQIRNLPF-T---PICPDLQTLFLKG--INE-LP----RELKALVNLKYLNLDHTTFLHPIPSPLISSFS 583 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~-~---~~~~~Lr~L~L~~--~~~-lp----~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~ 583 (831)
.++++|++++|.+....+ . ..+++|++|++++ +.. .| ..+..+++|++|+|++| .+..+|...+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCC
Confidence 447777777776654322 2 4566777777765 222 11 23445667777777777 45655544466777
Q ss_pred cCcEeeeccccCCCccccccccc--hhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccc
Q 003317 584 MLLVLRMFNCKSSSMANVVREVL--IDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSL 661 (831)
Q Consensus 584 ~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l 661 (831)
+|++|++++|.+.. .... ...+.++++|+.|+++.+.+..+...... .+
T Consensus 170 ~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------------------------l~ 220 (310)
T 4glp_A 170 ALTSLDLSDNPGLG-----ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------------------------LA 220 (310)
T ss_dssp TCCEEECCSCTTCH-----HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------------------------HH
T ss_pred CCCEEECCCCCCcc-----chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------------------------HH
Confidence 77777777765443 0000 11123455555555554444322221110 12
Q ss_pred cCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccc
Q 003317 662 GELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQV 741 (831)
Q Consensus 662 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~ 741 (831)
..+++|++|++++|......+..+. ....+++|++|+|++| .++.+|.-. .++|+.|++++|. +..++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~~-------- 288 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRAP-------- 288 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSCC--------
T ss_pred hcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCCc--------
Confidence 3455666666666655443222221 1111356677777665 344544311 2667777776643 44432
Q ss_pred cCCCCCCccceeccccc
Q 003317 742 QNLDPFAKLEYLVLENL 758 (831)
Q Consensus 742 ~~~~~~~~L~~L~L~~~ 758 (831)
.+..+++|+.|+++++
T Consensus 289 -~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 -QPDELPEVDNLTLDGN 304 (310)
T ss_dssp -CTTSCCCCSCEECSST
T ss_pred -hhhhCCCccEEECcCC
Confidence 2345667777777664
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=3.7e-14 Score=155.39 Aligned_cols=84 Identities=21% Similarity=0.195 Sum_probs=50.9
Q ss_pred cccccceeEEEecccccccc-----CC-CCCCCCcccccccCc--C----ccchhh-------hcCCcccEEeccCCCCC
Q 003317 511 IERWKGVRKISLMQNQIRNL-----PF-TPICPDLQTLFLKGI--N----ELPREL-------KALVNLKYLNLDHTTFL 571 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~l-----p~-~~~~~~Lr~L~L~~~--~----~lp~~i-------~~L~~Lr~L~L~~~~~l 571 (831)
+..++++++|+|++|.+... +. ...+++|++|+|++. . .+|..+ ..+++|++|+|++| .+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 34456777778877776542 11 245677777777651 2 234333 56677777777777 44
Q ss_pred CC-----CChhhhcCCccCcEeeeccccCC
Q 003317 572 HP-----IPSPLISSFSMLLVLRMFNCKSS 596 (831)
Q Consensus 572 ~~-----lp~~~i~~L~~L~~L~l~~~~~~ 596 (831)
.. +|.. +.++++|++|++++|.+.
T Consensus 107 ~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 107 GPTAQEPLIDF-LSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CTTTHHHHHHH-HHHCTTCCEEECCSSCCH
T ss_pred CHHHHHHHHHH-HHhCCCCCEEECcCCCCC
Confidence 44 4443 666777777777776654
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=3.4e-11 Score=131.62 Aligned_cols=293 Identities=14% Similarity=-0.003 Sum_probs=178.1
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcc--CCC--CCEEEEEEeCCCC-CHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSR--KDD--FDVVIWVVVSKDL-KIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~~--F~~~~wv~~s~~~-~~~~~ 223 (831)
..++||+.+++++.+++.. +..+.+.|+|++|+||||+|+.+++...... ... ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999998877643 4567999999999999999999999864110 011 3467888887777 88889
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc--cccc-ccCCCCCCCCcEEEEEcCChhH---
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD--LTQL-GVPLPSPTTASKVVFTTRFVEV--- 297 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~ilvTtR~~~v--- 297 (831)
+..++.++..........+.......+...+..++.+|||||++.... +... ...+.....+..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 999998883222112344456777788888887777999999975321 1111 1111111157788888886532
Q ss_pred -Hhhc--cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhC---CCch-HHHHHHHHh--cc---CC
Q 003317 298 -CGAM--KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECG---GLPL-ALITIGRAM--AC---KK 365 (831)
Q Consensus 298 -~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPl-ai~~~~~~l--~~---~~ 365 (831)
.... .....+.+++++.++..++|...+.... ....-..+..+.|++.++ |.|. |+..+-.+. .. .-
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 1111 1123899999999999999999875311 011122356778888888 8887 444433322 21 23
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHHHHHHhcCCCCCcchhhH
Q 003317 366 QPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLIDYWISEKILDNNDRSRA 445 (831)
Q Consensus 366 ~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 445 (831)
+.+.+..+++... ...+.-++..|++ +.+..+..++....+-.+. +......-..| +.. ..
T Consensus 259 ~~~~v~~~~~~~~------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~----~~ 319 (384)
T 2qby_B 259 RKEHVDKAIVDYE------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP----LS 319 (384)
T ss_dssp CHHHHHHHHHHHH------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC----CC
T ss_pred CHHHHHHHHHHHh------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC----CC
Confidence 5566666655432 1234556677886 5555555455411101111 11111111223 111 12
Q ss_pred HHHHHHHHHHHHhccccccc
Q 003317 446 INEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 446 ~~~~~~~~~~L~~~~ll~~~ 465 (831)
......+++.|...|++...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 34556779999999999763
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=3.2e-13 Score=155.32 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=124.0
Q ss_pred ceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 516 GVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
.+..+.+..+.+..+.....+++|+.|++++ +..+| .++.|++|++|+|++| .+..+|+ +++|++|++|++++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC
Confidence 3444455555555554445667777777765 55555 4667777777777777 5666665 667777777777776
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
.+.. +..+.+|++|+.| +|+++. ...+ ..+..+++|+.|+|+
T Consensus 98 ~l~~---------l~~l~~l~~L~~L--------------------------~Ls~N~-l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 98 KIKD---------LSSLKDLKKLKSL--------------------------SLEHNG-ISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp CCCC---------CTTSTTCTTCCEE--------------------------ECTTSC-CCCC--GGGGGCTTCSEEECC
T ss_pred CCCC---------ChhhccCCCCCEE--------------------------EecCCC-CCCC--ccccCCCccCEEECC
Confidence 6554 1134444444444 444433 1222 246678899999999
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCcccee
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYL 753 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L 753 (831)
+|....+ ..+. .+++|+.|+|++| .+..++++..+++|+.|+|++|. +..++ .+..+++|+.|
T Consensus 140 ~N~l~~l--~~l~----~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L 202 (605)
T 1m9s_A 140 NNKITDI--TVLS----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVL 202 (605)
T ss_dssp SSCCCCC--GGGG----SCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCSEE
T ss_pred CCccCCc--hhhc----ccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCC-CCCCh---------HHccCCCCCEE
Confidence 9977654 3333 4899999999998 56666668899999999999964 55552 56788999999
Q ss_pred cccccc
Q 003317 754 VLENLM 759 (831)
Q Consensus 754 ~L~~~~ 759 (831)
+|++++
T Consensus 203 ~L~~N~ 208 (605)
T 1m9s_A 203 ELFSQE 208 (605)
T ss_dssp ECCSEE
T ss_pred EccCCc
Confidence 999864
No 97
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.5e-11 Score=134.54 Aligned_cols=290 Identities=14% Similarity=0.073 Sum_probs=178.7
Q ss_pred CCcccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcc--CCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSR--KDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
+.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... .+.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 4667899999999999999999998864110 011235678888888889999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCccc----cccc---ccCCCCC--CCCcEEEEEcCCh
Q 003317 227 IWKKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRVD----LTQL---GVPLPSP--TTASKVVFTTRFV 295 (831)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~l---~~~l~~~--~~gs~ilvTtR~~ 295 (831)
++.+++..... ...+..+....+...+. +++.+|||||++.... .+.+ ....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999764321 34456666777777773 4688999999975421 1111 1111111 3456677777755
Q ss_pred hH--------HhhccCCceEEcCCCChHHHHHHHHHHhhhc--ccCCCCChHHHHHHHHHHhC---CCch-HHHHHHHHh
Q 003317 296 EV--------CGAMKAHEYFKVECLAHEKAWILFQEHVERQ--TLESHPDIPELAETVTKECG---GLPL-ALITIGRAM 361 (831)
Q Consensus 296 ~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~I~~~c~---GlPl-ai~~~~~~l 361 (831)
.. ...+ ....+.+++++.++..+++.+.+... ..... .+..+.+++.++ |.|. ++..+..+.
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 22 1211 12478999999999999999886531 11122 235677888888 9994 333332222
Q ss_pred c-----c--CCChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHh-cCCCCccccHHHHHHHHH-
Q 003317 362 A-----C--KKQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCC-LFPEDYKIHKMSLIDYWI- 432 (831)
Q Consensus 362 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~W~- 432 (831)
. . .-+.+.+..++.... ...+.-++..|+. +.+..+...+ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1 124555655554332 1234456678887 5555554444 443223455554444321
Q ss_pred ---hcCCCCCcchhhHHHHHHHHHHHHHhccccccc
Q 003317 433 ---SEKILDNNDRSRAINEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 433 ---aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 465 (831)
..| +.+ ........++++|...|++...
T Consensus 321 ~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-LEH----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEE
Confidence 123 111 1234566789999999999773
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=3e-14 Score=156.08 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=166.7
Q ss_pred eeEEEeccccccccCCC-CCCCCcccccccC--cC-----ccchhhhcCCcccEEeccCCCCCC----CCChhh------
Q 003317 517 VRKISLMQNQIRNLPFT-PICPDLQTLFLKG--IN-----ELPRELKALVNLKYLNLDHTTFLH----PIPSPL------ 578 (831)
Q Consensus 517 lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~-----~lp~~i~~L~~Lr~L~L~~~~~l~----~lp~~~------ 578 (831)
++...+....+..++.. ..+++|++|+|++ +. .++..+..+++|++|+|++| .+. .+|.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHH
Confidence 33333444444445443 6789999999998 22 24555778999999999998 344 345441
Q ss_pred hcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHH--HHHhhccccc---------ccccceee
Q 003317 579 ISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRAL--ERFLSFHKLK---------SCTGSLYL 647 (831)
Q Consensus 579 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l--~~l~~~~~l~---------~~L~~L~l 647 (831)
+.++++|++|++++|.+...+ ....+..+.++++|+.|+++.+.+... ..+....... ++|+.|++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTA---QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTT---HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HhhCCcccEEECCCCcCCHHH---HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 378999999999999876510 012345678899999999998776532 1222211111 58999999
Q ss_pred ccccCC-ceeee--ccccCCCCcceeeecCCCCCce-----eecccccCCCCCCCccEEEEEcCCCC-----CCCC-ccc
Q 003317 648 NVWEHS-NWLDV--LSLGELKNLHTLHMQFPFLDDL-----KFGCVRVGTHAFHSLHTVRIYYCSKL-----RDLT-WLA 713 (831)
Q Consensus 648 ~~~~~~-~~~~~--~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~l~~L~~L~L~~c~~l-----~~l~-~l~ 713 (831)
+++.-. ..++. ..+..+++|++|++++|..... .+..+ ..+++|+.|+|++|. + ..++ .+.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l----~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL----AYCQELKVLDLQDNT-FTHLGSSALAIALK 241 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----GGCTTCCEEECCSSC-CHHHHHHHHHHHGG
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----hcCCCccEEECcCCC-CCcHHHHHHHHHHc
Confidence 987632 12221 1455788999999999976531 11133 248999999999984 4 2333 467
Q ss_pred ccCCCceEEEecccCccccccCCccccccCC--CCCCccceecccccccccc-----cCCCC-CCCCCccEEeecCCC
Q 003317 714 LAPNVRNIGVSTCANMEEIISPGKISQVQNL--DPFAKLEYLVLENLMNLKS-----IYWSP-LPFPQLMEIRVNGCP 783 (831)
Q Consensus 714 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~--~~~~~L~~L~L~~~~~l~~-----i~~~~-~~~p~L~~L~l~~C~ 783 (831)
.+++|+.|+|++|. +......... ..+ +.+++|+.|+|++| .+.. ++... ..+|+|++|++++|+
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~---~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVV---DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHH---HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCcCEEECCCCC-CchhhHHHHH---HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 89999999999976 4432100000 023 44899999999997 4444 55443 458999999999975
No 99
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=6.3e-11 Score=129.76 Aligned_cols=289 Identities=12% Similarity=0.035 Sum_probs=179.6
Q ss_pred CCcccchHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHHhhhhccCCC-CCEEEEEEeCCCCCHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE----ENVG--IIGLYGMGGVGKTTLLTQINNKFLDSRKDD-FDVVIWVVVSKDLKIERIQD 225 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~ 225 (831)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++... .. -..+++++++...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~----~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK----DKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT----TSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh----hhcCeeEEEEeCccCCCHHHHHH
Confidence 6789999999999988854 3334 899999999999999999998874 22 23567888888888889999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCc--ccccccccCCCCC-C---CCcEEEEEcCChhH
Q 003317 226 DIWKKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKR--VDLTQLGVPLPSP-T---TASKVVFTTRFVEV 297 (831)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~-~---~gs~ilvTtR~~~v 297 (831)
.++..++..... ...+..+....+...+. +++.+|||||++.. .....+...+... . .+..||++|+....
T Consensus 93 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 999998754321 23456666667766664 56889999999764 2222332222111 1 36678888776543
Q ss_pred Hhhcc-------CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHh---------CCCchHHHHHHHH-
Q 003317 298 CGAMK-------AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKEC---------GGLPLALITIGRA- 360 (831)
Q Consensus 298 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPlai~~~~~~- 360 (831)
...+. ....+.+.+++.++..+++...+.... ....-..+..+.|++.+ +|.|..+..+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 32221 123699999999999999998875421 01122356778899999 7887654443322
Q ss_pred hc-----cC--CChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhcCC---CCccccHHHHHHH
Q 003317 361 MA-----CK--KQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCLFP---EDYKIHKMSLIDY 430 (831)
Q Consensus 361 l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~~ 430 (831)
.. .. -+.+....+..... . ..+.-.+..|+. +.+.++..++.+. .+..+....+...
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~---~---------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL---F---------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS---C---------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh---h---------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 11 11 12222333222221 1 112223456776 6677666666543 2224555666554
Q ss_pred HHh----cCCCCCcchhhHHHHHHHHHHHHHhccccccc
Q 003317 431 WIS----EKILDNNDRSRAINEGYYIIGVVLHSCLLEEA 465 (831)
Q Consensus 431 W~a----eg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 465 (831)
+-. .|.. .. .......++++|...+++...
T Consensus 318 ~~~~~~~~~~~-~~----~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGER-PR----VHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTCC-CC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCCC-CC----CHHHHHHHHHHHHhCCCeEEe
Confidence 432 2311 11 124456789999999999763
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=138.95 Aligned_cols=202 Identities=19% Similarity=0.117 Sum_probs=124.0
Q ss_pred CCcccEEeccCCCCCCCCChhhh--cCCccCcEeeeccccCCCcccccccc-chhhhcCCcCCCceeEeecchhHHHHHh
Q 003317 557 LVNLKYLNLDHTTFLHPIPSPLI--SSFSMLLVLRMFNCKSSSMANVVREV-LIDELVQLDHLNELSMSLHSIRALERFL 633 (831)
Q Consensus 557 L~~Lr~L~L~~~~~l~~lp~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~L~~L~i~~~~~~~l~~l~ 633 (831)
+.+|++|++++|......|.. + +++++|++|++++|.+... .+. ....+..+++|+.|+++.+.+.... +
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~ 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWATG----RSWLAELQQWLKPGLKVLSIAQAHSPAFS--C 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSST----TSSHHHHHTTBCSCCCEEEEECCSSCCCC--T
T ss_pred cCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccch----hhhhHHHHhhhccCCCEEEeeCCCcchhh--H
Confidence 455777777776322334443 4 6667777777777666541 000 0122345666666666655543211 1
Q ss_pred hcccccccccceeeccccCCce--eee-ccccCCCCcceeeecCCCCCceeec---ccccCCCCCCCccEEEEEcCCCCC
Q 003317 634 SFHKLKSCTGSLYLNVWEHSNW--LDV-LSLGELKNLHTLHMQFPFLDDLKFG---CVRVGTHAFHSLHTVRIYYCSKLR 707 (831)
Q Consensus 634 ~~~~l~~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~l~~L~~L~L~~c~~l~ 707 (831)
......++|+.|+++++.-... +.. ..+..+++|++|++++|....++.. .+. .+++|+.|+|++|. +.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~----~l~~L~~L~Ls~N~-l~ 237 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA----AGVQPHSLDLSHNS-LR 237 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH----HTCCCSSEECTTSC-CC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh----cCCCCCEEECCCCC-CC
Confidence 1111234677777776652211 111 1235788999999999977543221 122 37999999999985 44
Q ss_pred CC-C-ccccc---CCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCCCccEEeecCC
Q 003317 708 DL-T-WLALA---PNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFPQLMEIRVNGC 782 (831)
Q Consensus 708 ~l-~-~l~~l---~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~l~~C 782 (831)
.. | .+..+ ++|+.|++++|. ++.++. .+ +++|+.|+++++ +++.++. ...+|+|+.|+++++
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~--------~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK--------GL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS--------CC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred ccchhhHHhccCcCcCCEEECCCCC-CCchhh--------hh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 43 3 34444 899999999854 666654 23 489999999995 7777764 567899999999886
Q ss_pred C
Q 003317 783 P 783 (831)
Q Consensus 783 ~ 783 (831)
+
T Consensus 305 ~ 305 (310)
T 4glp_A 305 P 305 (310)
T ss_dssp T
T ss_pred C
Confidence 4
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=5e-12 Score=129.34 Aligned_cols=172 Identities=17% Similarity=0.259 Sum_probs=100.6
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
...++++++++.+..+|... .++|+.|++++ +..++ ..++++++|++|+|++| .+..++...+.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 34567888888888887642 25777777776 44443 45677777777777777 5666666556777777777777
Q ss_pred cccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceee
Q 003317 592 NCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLH 671 (831)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 671 (831)
+|.+..+ ....+.++++|+.|+++.+. ...++...+..+++|+.|+
T Consensus 92 ~n~l~~~-------~~~~~~~l~~L~~L~L~~N~---------------------------l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 92 NNQLASL-------PLGVFDHLTQLDKLYLGGNQ---------------------------LKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TSCCCCC-------CTTTTTTCTTCCEEECCSSC---------------------------CCCCCTTTTTTCTTCCEEE
T ss_pred CCccccc-------ChhHhcccCCCCEEEcCCCc---------------------------CCCcChhHhccCCcccEEE
Confidence 7766552 12223444444444443222 1111111344566677777
Q ss_pred ecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEeccc
Q 003317 672 MQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCA 727 (831)
Q Consensus 672 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 727 (831)
+++|....+++..+. .+++|+.|+|++| .+..++ .+..+++|+.|++++++
T Consensus 138 Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 138 LNTNQLQSIPAGAFD----KLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCcCCccCHHHcC----cCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 766655544433332 2566666666665 344443 25566666666666643
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=3.4e-13 Score=156.76 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=61.9
Q ss_pred CCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcc
Q 003317 557 LVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFH 636 (831)
Q Consensus 557 L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~ 636 (831)
+++|+.|+++++ ....+|. .+..+++|++|++++|.+.. .....-+.++++|+.|++. +.+. ...+..+.
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L~Ls~~~l~~------~~~~~~~~~~~~L~~L~L~-~~~~-~~~l~~~~ 338 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPI-LFPFAAQIRKLDLLYALLET------EDHCTLIQKCPNLEVLETR-NVIG-DRGLEVLA 338 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGG-GGGGGGGCCEEEETTCCCCH------HHHHHHHTTCTTCCEEEEE-GGGH-HHHHHHHH
T ss_pred cccccccCcccc-chhHHHH-HHhhcCCCcEEecCCCcCCH------HHHHHHHHhCcCCCEEecc-CccC-HHHHHHHH
Confidence 333333433333 2334454 35667777777777776432 1122335667777777766 2222 12222222
Q ss_pred cccccccceeecc----------ccCCceeeecc-ccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEc
Q 003317 637 KLKSCTGSLYLNV----------WEHSNWLDVLS-LGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYY 702 (831)
Q Consensus 637 ~l~~~L~~L~l~~----------~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 702 (831)
..+++|+.|++++ |.......... ...+++|++|++.++......+..+. ..+++|+.|++++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVL 412 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEE
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEee
Confidence 2334677777774 33322221111 22356666666644433321112211 0245566666653
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=9.9e-12 Score=127.10 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=38.2
Q ss_pred ceeEEEeccccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 516 GVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
++++|++++|.+..++.. ..+++|++|++++ +..++ ..+..+++|++|+|++| .+..+|...+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEc
Confidence 445555555555444332 4445555555554 33332 22444555555555555 344444443445555555555
Q ss_pred ccccCCC
Q 003317 591 FNCKSSS 597 (831)
Q Consensus 591 ~~~~~~~ 597 (831)
++|.+..
T Consensus 115 ~~N~l~~ 121 (251)
T 3m19_A 115 GGNQLKS 121 (251)
T ss_dssp CSSCCCC
T ss_pred CCCcCCC
Confidence 5554443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=4.8e-12 Score=132.42 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=101.6
Q ss_pred eccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCcc
Q 003317 522 LMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMA 599 (831)
Q Consensus 522 l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 599 (831)
+..+.+..+.....+++|+.|++++ +..+| .++.+++|++|++++| .+..+|. ++++++|++|++++|.+..
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-- 104 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-- 104 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC--
Confidence 3333333333334455555555554 33343 2445555555555555 3444443 4555555555555554433
Q ss_pred ccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc
Q 003317 600 NVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD 679 (831)
Q Consensus 600 ~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 679 (831)
+..+.+++ +|+.|+++++. ...+ ..+..+++|+.|++++|....
T Consensus 105 -------~~~l~~l~--------------------------~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 105 -------LSSLKDLK--------------------------KLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp -------GGGGTTCT--------------------------TCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred -------ChhhccCC--------------------------CCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCCcCCc
Confidence 11233333 34444444443 2222 245667888888888887655
Q ss_pred eeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 680 LKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 680 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
+ ..+. .+++|+.|++++| .+..++.+..+++|+.|++++| .+.+++ .+..+++|+.|+++++
T Consensus 149 ~--~~l~----~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~---------~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 149 I--TVLS----RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp C--GGGG----GCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEEEEEE
T ss_pred c--hhhc----cCCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCCh---------hhccCCCCCEEECcCC
Confidence 4 2332 3788888888887 5666666888888888888885 455543 4567888888888875
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=3.9e-11 Score=131.22 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=173.7
Q ss_pred CCcccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLG----EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
..++||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++..... ...-..++|+.+....+...++..++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK-FLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH-TCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEECCCCCCHHHHHHHHH
Confidence 678999999999999886 3456799999999999999999999986411 00023567888777777888888888
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCcc------cccccccCCCC-CCCCcEEEEEcCChhHHh
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRV------DLTQLGVPLPS-PTTASKVVFTTRFVEVCG 299 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 299 (831)
.+++..... ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 888654321 23345666667777665 458999999996532 12222111110 233556777777654322
Q ss_pred hcc-------CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhC---CCchHHHH-HHHHhc-----c
Q 003317 300 AMK-------AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECG---GLPLALIT-IGRAMA-----C 363 (831)
Q Consensus 300 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPlai~~-~~~~l~-----~ 363 (831)
.+. ....+.+++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+.. +..... .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 211 124799999999999999998764321 111223566778888887 99984433 322221 1
Q ss_pred --CCChhHHHHHHHHHhcccCCCCCchhhhhHHhhccCCCCchhHHHHHHHHhc-CCCC-ccccHHHHHHHH--Hh--cC
Q 003317 364 --KKQPEDWKYAIQVLRRSASEFPGMDEVYPRLKFSYDSLPGEKIRSCFLYCCL-FPED-YKIHKMSLIDYW--IS--EK 435 (831)
Q Consensus 364 --~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~-fp~~-~~i~~~~li~~W--~a--eg 435 (831)
.-+.+.++.++.... ...+.-.+..+|. +.+..+..++. +-.+ ..+....+.+.. ++ .|
T Consensus 257 ~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp CSSCCHHHHHHHHHHHH------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHh------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 124445554444321 1234555677876 55555554442 2111 223343332222 11 12
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcccccc
Q 003317 436 ILDNNDRSRAINEGYYIIGVVLHSCLLEE 464 (831)
Q Consensus 436 ~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 464 (831)
+.+ ........+++.|...|++..
T Consensus 324 -~~~----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 -VEA----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp -CCC----CCHHHHHHHHHHHHHHTSEEE
T ss_pred -CCC----CCHHHHHHHHHHHHhCCCEEE
Confidence 111 112345567899999999965
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.30 E-value=1.9e-13 Score=153.58 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=19.0
Q ss_pred CCCCccceecccccccccccCC-----C-CCCCCCccEEeecCCC
Q 003317 745 DPFAKLEYLVLENLMNLKSIYW-----S-PLPFPQLMEIRVNGCP 783 (831)
Q Consensus 745 ~~~~~L~~L~L~~~~~l~~i~~-----~-~~~~p~L~~L~l~~C~ 783 (831)
..+++|++|+++++ .+..... . ....++|++|++++|.
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 34566666666664 2221110 0 1123577777777764
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=7.8e-12 Score=122.68 Aligned_cols=152 Identities=15% Similarity=0.252 Sum_probs=97.1
Q ss_pred hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHh
Q 003317 554 LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFL 633 (831)
Q Consensus 554 i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~ 633 (831)
.+.+++|++|++++| .+..+| + +..+++|++|++++|.+.. +..+.++++|+.|+++.+.+..
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~~---------~~~l~~l~~L~~L~l~~n~l~~----- 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHATN---------YNPISGLSNLERLRIMGKDVTS----- 102 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCSC---------CGGGTTCTTCCEEEEECTTCBG-----
T ss_pred hhhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCCc---------chhhhcCCCCCEEEeECCccCc-----
Confidence 366778888888888 677777 3 7888888888888885543 2345566666666665433211
Q ss_pred hcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCccc
Q 003317 634 SFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLA 713 (831)
Q Consensus 634 ~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~ 713 (831)
.....+..+++|+.|++++|......+..+. .+++|+.|++++|..++.++.+.
T Consensus 103 ----------------------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~~l~ 156 (197)
T 4ezg_A 103 ----------------------DKIPNLSGLTSLTLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIMPLK 156 (197)
T ss_dssp ----------------------GGSCCCTTCTTCCEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCGGGG
T ss_pred ----------------------ccChhhcCCCCCCEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccHhhc
Confidence 0011455667777777777765543333333 36777777777775466677777
Q ss_pred ccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 714 LAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 714 ~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
.+++|+.|++++|. +.+++ .+..+++|+.|+++++
T Consensus 157 ~l~~L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 157 TLPELKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSCCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC
T ss_pred CCCCCCEEECCCCC-CcChH---------HhccCCCCCEEEeeCc
Confidence 77777777777754 44432 3456677777777664
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=6.8e-13 Score=143.84 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=136.9
Q ss_pred ccceeEEEeccccccccCC----C--CCCC-CcccccccC--cCcc-chhhhcC-----CcccEEeccCCCCCCCCChhh
Q 003317 514 WKGVRKISLMQNQIRNLPF----T--PICP-DLQTLFLKG--INEL-PRELKAL-----VNLKYLNLDHTTFLHPIPSPL 578 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~----~--~~~~-~Lr~L~L~~--~~~l-p~~i~~L-----~~Lr~L~L~~~~~l~~lp~~~ 578 (831)
.+++++|++++|.+...+. . ..++ +|++|+|++ +... +..++.+ ++|++|+|++| .+...+...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 3558999999998887654 1 5666 888888887 3332 4555554 88888998888 567665433
Q ss_pred hc----CC-ccCcEeeeccccCCCccccccccchhhhcCC-cCCCceeEeecchhH--HHHHhhc-ccccccccceeecc
Q 003317 579 IS----SF-SMLLVLRMFNCKSSSMANVVREVLIDELVQL-DHLNELSMSLHSIRA--LERFLSF-HKLKSCTGSLYLNV 649 (831)
Q Consensus 579 i~----~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~~L~~L~i~~~~~~~--l~~l~~~-~~l~~~L~~L~l~~ 649 (831)
+. .+ ++|++|++++|.+...+ .......+..+ ++|+.|+++.+.+.. ...+... .....+|+.|++++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKS---SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSC---HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHH---HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 33 34 78888888888876520 00111234443 578888887666541 2222221 12223788888887
Q ss_pred ccCCceeeec----cccCC-CCcceeeecCCCCCceeecccccCCCC-CCCccEEEEEcCCCCCCCCc------ccccCC
Q 003317 650 WEHSNWLDVL----SLGEL-KNLHTLHMQFPFLDDLKFGCVRVGTHA-FHSLHTVRIYYCSKLRDLTW------LALAPN 717 (831)
Q Consensus 650 ~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~------l~~l~~ 717 (831)
|.- ...... .+..+ ++|++|++++|.........+...... .++|+.|+|++| .++..+. +..+++
T Consensus 177 n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 177 NNL-ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp SCG-GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTT
T ss_pred CCC-chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCC
Confidence 752 222111 23334 488888888886554211111100011 357888888887 4554432 356788
Q ss_pred CceEEEecccCccccccCCccccccCCCCCCccceecccccc
Q 003317 718 VRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLM 759 (831)
Q Consensus 718 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 759 (831)
|+.|++++|. +..+.......-...+..+++|+.|++++++
T Consensus 255 L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 255 LQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8888888865 1111110000000045567778888887753
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=2.8e-12 Score=139.01 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=164.5
Q ss_pred EEecccccccc-CCC-CCCCCcccccccC--cCccc-----hhhhcCC-cccEEeccCCCCCCCCChhhhcCC-----cc
Q 003317 520 ISLMQNQIRNL-PFT-PICPDLQTLFLKG--INELP-----RELKALV-NLKYLNLDHTTFLHPIPSPLISSF-----SM 584 (831)
Q Consensus 520 L~l~~~~i~~l-p~~-~~~~~Lr~L~L~~--~~~lp-----~~i~~L~-~Lr~L~L~~~~~l~~lp~~~i~~L-----~~ 584 (831)
..++.|.+... |.. ...++|++|++++ +...+ ..+..++ +|++|+|++| .+...+...+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 45677777653 333 4556699999998 55544 6778888 9999999999 6777765456665 99
Q ss_pred CcEeeeccccCCCcccccccc-chhhhcCC-cCCCceeEeecchhHH--HHHhhc-ccccccccceeeccccCCceeeec
Q 003317 585 LLVLRMFNCKSSSMANVVREV-LIDELVQL-DHLNELSMSLHSIRAL--ERFLSF-HKLKSCTGSLYLNVWEHSNWLDVL 659 (831)
Q Consensus 585 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L-~~L~~L~i~~~~~~~l--~~l~~~-~~l~~~L~~L~l~~~~~~~~~~~~ 659 (831)
|++|++++|.+... .+. ....+..+ ++|+.|+++.+.+... ..+... ..+..+|+.|+++++.- ......
T Consensus 82 L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~ 156 (362)
T 3goz_A 82 VTSLNLSGNFLSYK----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSD 156 (362)
T ss_dssp CCEEECCSSCGGGS----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHH
T ss_pred ccEEECcCCcCChH----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHHHHH
Confidence 99999999987752 111 12235566 8899999988776532 222221 12235899999998762 221111
Q ss_pred ----cccCCC-CcceeeecCCCCCceeecccccCCCCC-CCccEEEEEcCCCCCC-----CC-cccc-cCCCceEEEecc
Q 003317 660 ----SLGELK-NLHTLHMQFPFLDDLKFGCVRVGTHAF-HSLHTVRIYYCSKLRD-----LT-WLAL-APNVRNIGVSTC 726 (831)
Q Consensus 660 ----~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~-----l~-~l~~-l~~L~~L~L~~c 726 (831)
.+..++ +|++|++++|......+..+......+ ++|+.|+|++|. ++. ++ .+.. .++|+.|+|++|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 233444 999999999976654333222111124 599999999984 444 22 2334 359999999996
Q ss_pred cCccccccCCccccccCCCCCCccceecccccc-------cccccCCCCCCCCCccEEeecCCC
Q 003317 727 ANMEEIISPGKISQVQNLDPFAKLEYLVLENLM-------NLKSIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 727 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~-------~l~~i~~~~~~~p~L~~L~l~~C~ 783 (831)
. +.+....... ..+..+++|+.|++++|. .+..+......+++|+.|++++++
T Consensus 236 ~-l~~~~~~~l~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 C-LHGPSLENLK---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp C-CCCCCHHHHH---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred C-CCcHHHHHHH---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4 5443210000 045678999999999874 133344445678899999998764
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=5.1e-12 Score=130.05 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=88.2
Q ss_pred CCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcC
Q 003317 535 ICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQ 612 (831)
Q Consensus 535 ~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 612 (831)
.+.++..+++++ +..++ .+..+++|++|++++| .+..+|. ++.+++|++|++++|.+..+ +. +.+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~i~~~--------~~-l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQISDL--------SP-LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCC--------GG-GTT
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCCccCCC--------hh-hcc
Confidence 344444444443 44444 4556666666666666 5666662 66666666666666665541 11 555
Q ss_pred CcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCC
Q 003317 613 LDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAF 692 (831)
Q Consensus 613 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 692 (831)
+++|+.|+++.+.+..+..+ .. .+|+.|+++++. ...++ .+..+++|+.|++++|....++ .+. .+
T Consensus 84 l~~L~~L~L~~N~l~~l~~~---~~--~~L~~L~L~~N~-l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~----~l 149 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNLNGI---PS--ACLSRLFLDNNE-LRDTD--SLIHLKNLEILSIRNNKLKSIV--MLG----FL 149 (263)
T ss_dssp CSSCCEEECCSSCCSCCTTC---CC--SSCCEEECCSSC-CSBSG--GGTTCTTCCEEECTTSCCCBCG--GGG----GC
T ss_pred CCCCCEEECCCCccCCcCcc---cc--CcccEEEccCCc-cCCCh--hhcCcccccEEECCCCcCCCCh--HHc----cC
Confidence 66666666554443322211 11 345555555543 22222 3555666666666666554431 222 25
Q ss_pred CCccEEEEEcCCCCCCCCcccccCCCceEEEeccc
Q 003317 693 HSLHTVRIYYCSKLRDLTWLALAPNVRNIGVSTCA 727 (831)
Q Consensus 693 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 727 (831)
++|+.|++++| .+..++.+..+++|+.|+++++.
T Consensus 150 ~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 66666666665 34444556666666666666643
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=4.6e-11 Score=118.30 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=39.8
Q ss_pred EEEeccccccccCCCCCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccC
Q 003317 519 KISLMQNQIRNLPFTPICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKS 595 (831)
Q Consensus 519 ~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 595 (831)
.++.+++.+..+|.. ..++|++|++++ +..+|. .++.+++|++|++++| .+..+|...+.++++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 344555555555432 233455555554 334433 2455666666666665 45555554445566666666665554
Q ss_pred CC
Q 003317 596 SS 597 (831)
Q Consensus 596 ~~ 597 (831)
..
T Consensus 89 ~~ 90 (208)
T 2o6s_A 89 QS 90 (208)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=3.4e-11 Score=136.78 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=106.5
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
.++++|++++|.+..+|... +++|++|+|++ +..+| +.+++|++|+|++| .+..+|. +++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCC
Confidence 37889999999998887743 47899999987 77788 56789999999998 6788886 554 899999998
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeee
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHM 672 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 672 (831)
|.+..+ +. .+++|+.|+++.+.+..++ . ..++|+.|+++++. ...++. +. ++|+.|++
T Consensus 130 N~l~~l-----p~------~l~~L~~L~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~L 187 (571)
T 3cvr_A 130 NQLTML-----PE------LPALLEYINADNNQLTMLP---E---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDV 187 (571)
T ss_dssp SCCSCC-----CC------CCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEEC
T ss_pred CcCCCC-----CC------cCccccEEeCCCCccCcCC---C---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEEC
Confidence 887762 21 4667777777655543221 1 23355556655554 222221 22 55666666
Q ss_pred cCCCCCceeecccccC-CCCCCCccEEEEEcCCCCCCCCc-ccccCCCceEEEeccc
Q 003317 673 QFPFLDDLKFGCVRVG-THAFHSLHTVRIYYCSKLRDLTW-LALAPNVRNIGVSTCA 727 (831)
Q Consensus 673 ~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~ 727 (831)
++|....++. +... ....+.|+.|+|++| .++.+|. +..+++|+.|+|++|.
T Consensus 188 s~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 188 STNLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CSSCCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred cCCCCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 6554443322 2100 000111255555554 3444443 4455555555555543
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=6.8e-13 Score=149.10 Aligned_cols=263 Identities=16% Similarity=0.117 Sum_probs=167.5
Q ss_pred ccccccceeEEEeccccccccC-----C--CCCCCCcccccccC--cC-----ccchhhhcCCcccEEeccCCCCCCCCC
Q 003317 510 GIERWKGVRKISLMQNQIRNLP-----F--TPICPDLQTLFLKG--IN-----ELPRELKALVNLKYLNLDHTTFLHPIP 575 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp-----~--~~~~~~Lr~L~L~~--~~-----~lp~~i~~L~~Lr~L~L~~~~~l~~lp 575 (831)
.+..++++++|++++|.+.... . ....++|++|++++ +. .++..+..+++|++|++++| .+...+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAG 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHH
Confidence 3456678889999988875421 1 12356799999887 22 35677788899999999998 455432
Q ss_pred hhhhc-----CCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHH--HHHhh-cccccccccceee
Q 003317 576 SPLIS-----SFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRAL--ERFLS-FHKLKSCTGSLYL 647 (831)
Q Consensus 576 ~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l--~~l~~-~~~l~~~L~~L~l 647 (831)
...+. .+++|++|++++|.+...+ ....+..+.++++|+.|+++.+.+... ..+.. +.....+|+.|++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDN---CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTH---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHH---HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 22232 3668999999998776510 001345567788899999887765532 22221 2222458999999
Q ss_pred ccccCCceeee----ccccCCCCcceeeecCCCCCceeeccccc-CCCCCCCccEEEEEcCCCCCCC------CcccccC
Q 003317 648 NVWEHSNWLDV----LSLGELKNLHTLHMQFPFLDDLKFGCVRV-GTHAFHSLHTVRIYYCSKLRDL------TWLALAP 716 (831)
Q Consensus 648 ~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~ 716 (831)
++|. ...... ..+..+++|++|++++|......+..+.. .....++|+.|++++|. ++.. .++..++
T Consensus 264 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 264 WECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341 (461)
T ss_dssp TTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred cCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence 9885 333211 13556889999999998754322222211 01124699999999985 4332 1355779
Q ss_pred CCceEEEecccCccccccCCccccccCC-CCCCccceeccccccccc-----ccCCCCCCCCCccEEeecCCC
Q 003317 717 NVRNIGVSTCANMEEIISPGKISQVQNL-DPFAKLEYLVLENLMNLK-----SIYWSPLPFPQLMEIRVNGCP 783 (831)
Q Consensus 717 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~-----~i~~~~~~~p~L~~L~l~~C~ 783 (831)
+|+.|++++|. +.+........ .+ ...++|++|++++| .++ .++.....+++|++|++++|+
T Consensus 342 ~L~~L~Ls~n~-i~~~~~~~l~~---~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 342 FLLELQISNNR-LEDAGVRELCQ---GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SCCEEECCSSB-CHHHHHHHHHH---HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CccEEEccCCc-cccccHHHHHH---HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99999999974 54432100000 11 12679999999997 444 444444568999999999874
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=3.8e-12 Score=148.02 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=60.5
Q ss_pred CCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccc--------cC
Q 003317 581 SFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVW--------EH 652 (831)
Q Consensus 581 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~--------~~ 652 (831)
.+++|++|++++|.+.. .....-+.++++|+.|++..+ +. ...+..+...+++|+.|++.++ ..
T Consensus 287 ~~~~L~~L~L~~~~l~~------~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQS------YDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp HHTTCCEEECTTCCCCH------HHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hhCCCCEEEccCCCCCH------HHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 44556666666555322 111222446666666666643 11 1222222222346777777432 11
Q ss_pred Cceeeecccc-CCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEE-----cCCCCCCCCc-------ccccCCCc
Q 003317 653 SNWLDVLSLG-ELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIY-----YCSKLRDLTW-------LALAPNVR 719 (831)
Q Consensus 653 ~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~l~~l~~-------l~~l~~L~ 719 (831)
........+. .+++|++|.+.++.........+. ..+++|+.|+++ +|..++..|. +..+++|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 1111111121 356666665544443322122221 125677777777 4455553331 23455566
Q ss_pred eEEEec
Q 003317 720 NIGVST 725 (831)
Q Consensus 720 ~L~L~~ 725 (831)
.|++++
T Consensus 436 ~L~L~~ 441 (594)
T 2p1m_B 436 RLSLSG 441 (594)
T ss_dssp EEECCS
T ss_pred EEeecC
Confidence 665544
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=2.5e-11 Score=119.04 Aligned_cols=149 Identities=15% Similarity=0.245 Sum_probs=96.6
Q ss_pred ccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCC-CChhhhcCCccCcEe
Q 003317 512 ERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHP-IPSPLISSFSMLLVL 588 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~-lp~~~i~~L~~L~~L 588 (831)
..+.++++|++++|.+..+|....+++|++|++++ +..+ ..++.+++|++|++++| .+.. .|.. ++++++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEE
Confidence 45678889999988888877667777777777776 3333 35677777777777777 4554 3443 7777777777
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcc
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLH 668 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 668 (831)
++++|.+.. ..+..+.++++|+.|+++ +|.....++ .+..+++|+
T Consensus 118 ~Ls~n~i~~-------~~~~~l~~l~~L~~L~L~--------------------------~n~~i~~~~--~l~~l~~L~ 162 (197)
T 4ezg_A 118 DISHSAHDD-------SILTKINTLPKVNSIDLS--------------------------YNGAITDIM--PLKTLPELK 162 (197)
T ss_dssp ECCSSBCBG-------GGHHHHTTCSSCCEEECC--------------------------SCTBCCCCG--GGGGCSSCC
T ss_pred EecCCccCc-------HhHHHHhhCCCCCEEEcc--------------------------CCCCccccH--hhcCCCCCC
Confidence 777776654 234555556655555554 332122222 456677888
Q ss_pred eeeecCCCCCceeecccccCCCCCCCccEEEEEcCC
Q 003317 669 TLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCS 704 (831)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 704 (831)
.|++++|....++ .+. .+++|+.|+++++.
T Consensus 163 ~L~l~~n~i~~~~--~l~----~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 163 SLNIQFDGVHDYR--GIE----DFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECTTBCCCCCT--TGG----GCSSCCEEEECBC-
T ss_pred EEECCCCCCcChH--Hhc----cCCCCCEEEeeCcc
Confidence 8888887665432 222 37888888887763
No 116
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=3.3e-10 Score=115.08 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=115.9
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++... ....+.. ........ ...+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~------~~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA------TPCGVCDN-CREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS------SCCSCSHH-HHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC------CCCcccHH-HHHHhccC
Confidence 468999999999999987643 46899999999999999999998875 1111100 00000000 00010000
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHHH-----cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChhH-Hh-h
Q 003317 232 GLCDN--SWRSKSLEDKAVDIFRVL-----SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVEV-CG-A 300 (831)
Q Consensus 232 ~~~~~--~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~-~ 300 (831)
..... .............+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+.... .. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 00000 000000111111222221 356899999999653 3344443333333456788888876432 11 1
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAM 361 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 361 (831)
......+.+.+++.++..+++.+.+..... .-..+..+.|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122467899999999999999988765331 1124667899999999999987765543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=1.4e-12 Score=148.92 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=82.2
Q ss_pred cccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcccccCCCce
Q 003317 641 CTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWLALAPNVRN 720 (831)
Q Consensus 641 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 720 (831)
.|+.|+++++. ...++ .+..+++|+.|++++|....++ ..++ .+++|+.|+|++| .++.+|.++.+++|+.
T Consensus 442 ~L~~L~Ls~n~-l~~lp--~~~~l~~L~~L~Ls~N~l~~lp-~~~~----~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLC--HLEQLLLVTHLDLSHNRLRALP-PALA----ALRCLEVLQASDN-ALENVDGVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSC-CSSCC--CGGGGTTCCEEECCSSCCCCCC-GGGG----GCTTCCEEECCSS-CCCCCGGGTTCSSCCE
T ss_pred CceEEEecCCC-CCCCc--CccccccCcEeecCcccccccc-hhhh----cCCCCCEEECCCC-CCCCCcccCCCCCCcE
Confidence 47778888765 34444 4777888888888888766553 3333 3788888888887 5666777888888888
Q ss_pred EEEecccCcccc--ccCCccccccCCCCCCccceecccccccccccCCCCC----CCCCccEEe
Q 003317 721 IGVSTCANMEEI--ISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPL----PFPQLMEIR 778 (831)
Q Consensus 721 L~L~~c~~l~~l--~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~----~~p~L~~L~ 778 (831)
|+|++| .+..+ |. .++.+++|+.|+|+++ .++.++.... .+|+|+.|+
T Consensus 513 L~Ls~N-~l~~~~~p~--------~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCNN-RLQQSAAIQ--------PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCSS-CCCSSSTTG--------GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCCC-CCCCCCCcH--------HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 888884 45555 33 5677888888888885 5555554322 267777775
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.17 E-value=9.5e-11 Score=115.98 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=108.6
Q ss_pred cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 547 INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 547 ~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
+..+|..+ ..+|++|++++| .+..+|...+.++++|++|++++|.+..+ ....+.++++|+.|+++.+.+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSL-------PNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCcc-------ChhhcCCCCCcCEEECCCCcC
Confidence 55666544 458999999999 68888877678999999999998877652 122345556666655553321
Q ss_pred hHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCC
Q 003317 627 RALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKL 706 (831)
Q Consensus 627 ~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 706 (831)
..++...+..+++|++|++++|....++...+. .+++|+.|++++| .+
T Consensus 89 ---------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~l~~N-~l 136 (208)
T 2o6s_A 89 ---------------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQN-QL 136 (208)
T ss_dssp ---------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CC
T ss_pred ---------------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhc----cCCcCCEEECCCC-cc
Confidence 112212355677888888888766554443333 3778888888876 45
Q ss_pred CCCCc--ccccCCCceEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCCCCCCC
Q 003317 707 RDLTW--LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWSPLPFP 772 (831)
Q Consensus 707 ~~l~~--l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~p 772 (831)
+.++. +..+++|+.|+++++. ..+.+++|+.|.+..+.--..+|...+.++
T Consensus 137 ~~~~~~~~~~l~~L~~L~l~~N~---------------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 137 KSVPDGVFDRLTSLQYIWLHDNP---------------WDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCC---------------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ceeCHHHhccCCCccEEEecCCC---------------eecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 55543 5677888888887753 234567777777776544445554444443
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.16 E-value=1.2e-11 Score=143.62 Aligned_cols=256 Identities=17% Similarity=0.110 Sum_probs=156.2
Q ss_pred ccccceeEEEecccccc----cc-CCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCC-hhhhcCCc
Q 003317 512 ERWKGVRKISLMQNQIR----NL-PFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIP-SPLISSFS 583 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~----~l-p~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp-~~~i~~L~ 583 (831)
..+.++++|++...... .. .....+++|+.|++++ ...+|..+..+++|++|+|++|. +.... ...+.+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCc
Confidence 34566777777642211 11 1226778888888876 45678888899999999999995 44321 12368899
Q ss_pred cCcEeeeccccCCCccccccccchhhhcCCcCCCceeEee-----------cchhHHHHHhhcccccccccceeeccccC
Q 003317 584 MLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSL-----------HSIRALERFLSFHKLKSCTGSLYLNVWEH 652 (831)
Q Consensus 584 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~-----------~~~~~l~~l~~~~~l~~~L~~L~l~~~~~ 652 (831)
+|++|++.++ +.. .....-..++++|+.|++.. +.+. ...+..+...+++|+.|++.. ..
T Consensus 319 ~L~~L~L~~~-~~~------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~-~~ 389 (592)
T 3ogk_B 319 NLEVLETRNV-IGD------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYV-SD 389 (592)
T ss_dssp TCCEEEEEGG-GHH------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEE-SC
T ss_pred CCCEEeccCc-cCH------HHHHHHHHhCCCCCEEEeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeec-CC
Confidence 9999999843 222 12223335678888888883 2222 222223223346899999843 33
Q ss_pred CceeeeccccC-CCCcceeeecCCC---CCc-eeec-ccccCCCCCCCccEEEEEcCCC-CCC--CCccc-ccCCCceEE
Q 003317 653 SNWLDVLSLGE-LKNLHTLHMQFPF---LDD-LKFG-CVRVGTHAFHSLHTVRIYYCSK-LRD--LTWLA-LAPNVRNIG 722 (831)
Q Consensus 653 ~~~~~~~~l~~-l~~L~~L~l~~~~---~~~-~~~~-~~~~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~ 722 (831)
.+......+.. +++|++|+++++. ..+ .+.+ .+......+++|+.|+++.|.. ++. +..++ .+++|+.|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 33322223433 7899999997432 222 2111 1110112378999999988753 222 22333 489999999
Q ss_pred EecccCccc--cccCCccccccCCCCCCccceecccccccccc--cCCCCCCCCCccEEeecCCCCCCCC
Q 003317 723 VSTCANMEE--IISPGKISQVQNLDPFAKLEYLVLENLMNLKS--IYWSPLPFPQLMEIRVNGCPILQKL 788 (831)
Q Consensus 723 L~~c~~l~~--l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--i~~~~~~~p~L~~L~l~~C~~L~~l 788 (831)
+++|. +.+ ++. ...++++|++|+|++|+ ++. ++.....+|+|++|++++|+ ++.-
T Consensus 470 L~~n~-l~~~~~~~--------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 470 LGYVG-ESDEGLME--------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp ECSCC-SSHHHHHH--------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred ccCCC-CCHHHHHH--------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 99876 432 111 34678999999999987 443 22223458999999999997 6544
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=8.8e-11 Score=133.42 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCC
Q 003317 538 DLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 538 ~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
+|++|++++ +..+|..+ +++|++|+|++| .+..+| + .+++|++|++++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP-E---LPASLEYLDACDNRLST 114 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCCCCC
Confidence 566666665 45555544 256666666666 455666 2 35666666666665554
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=3.7e-10 Score=112.97 Aligned_cols=182 Identities=14% Similarity=0.171 Sum_probs=115.8
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... . ..+ ...+.+..+.......+...+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--G-ENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--G-GGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--c-cccccceEEeccccccChHHHHHHHHHHh
Confidence 46799999999999999876666699999999999999999998763 1 112 1234444444333333222222111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCChhH-Hh-hccCCceE
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFVEV-CG-AMKAHEYF 307 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~-~~~~~~~~ 307 (831)
.... .-.+++.+||+||++... ....+...+.....+.++|+||+.... .. .......+
T Consensus 94 ~~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 94 RTAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp TSCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 1100 012578899999997642 233333223223456788888876532 11 11223478
Q ss_pred EcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 308 KVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 308 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
.+.+++.++..+++.+.+...... -..+..+.|++.++|.|..+..+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999887643311 12456788999999999865443
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=9.1e-11 Score=120.65 Aligned_cols=146 Identities=22% Similarity=0.281 Sum_probs=96.3
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
.+..+.++++|++++|.+..++....+++|++|++++ +..+|. ++.+++|++|++++| .+..+|. +.. .+|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~--~~~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNG--IPS-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT--CCC-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCc--ccc-CcccE
Confidence 4556677888888888777777657777777777776 666666 777777777777777 5777775 334 77777
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNL 667 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 667 (831)
|++++|.+.. +..+.++++|+.|+++.+.+ ..++ .+..+++|
T Consensus 111 L~L~~N~l~~---------~~~l~~l~~L~~L~Ls~N~i---------------------------~~~~--~l~~l~~L 152 (263)
T 1xeu_A 111 LFLDNNELRD---------TDSLIHLKNLEILSIRNNKL---------------------------KSIV--MLGFLSKL 152 (263)
T ss_dssp EECCSSCCSB---------SGGGTTCTTCCEEECTTSCC---------------------------CBCG--GGGGCTTC
T ss_pred EEccCCccCC---------ChhhcCcccccEEECCCCcC---------------------------CCCh--HHccCCCC
Confidence 7777776654 12355555555555543322 2221 45567788
Q ss_pred ceeeecCCCCCceeecccccCCCCCCCccEEEEEcCC
Q 003317 668 HTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCS 704 (831)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 704 (831)
+.|++++|..... ..+ ..+++|+.|++++|.
T Consensus 153 ~~L~L~~N~i~~~--~~l----~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGL----TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCCCBC--TTS----TTCCCCCEEEEEEEE
T ss_pred CEEECCCCcCcch--HHh----ccCCCCCEEeCCCCc
Confidence 8888888766544 222 347788888888764
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.06 E-value=1.8e-11 Score=142.25 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=29.7
Q ss_pred CCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCcc-cccCCCceEEEec
Q 003317 663 ELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTWL-ALAPNVRNIGVST 725 (831)
Q Consensus 663 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l-~~l~~L~~L~L~~ 725 (831)
.+++|++|++++|.........+ ...+++|+.|++++|..-..++.+ ..+++|+.|++.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHH---HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCCCCEEEccCCCCCHHHHHHH---HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 45677777777776322111111 113567777777766111112222 2366677776644
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=6.3e-10 Score=110.97 Aligned_cols=80 Identities=26% Similarity=0.340 Sum_probs=35.0
Q ss_pred ceeEEEeccccccccCCC--CCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 516 GVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
++++|++++|.+..++.. ..+++|++|+|++ +..+ |..+.++++|++|+|++| .+..+|...+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEEC
Confidence 444555555544444431 3444444444443 2222 334444444444444444 344444433344444444444
Q ss_pred ccccCC
Q 003317 591 FNCKSS 596 (831)
Q Consensus 591 ~~~~~~ 596 (831)
++|.+.
T Consensus 112 ~~N~l~ 117 (220)
T 2v9t_B 112 NANKIN 117 (220)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 444433
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=5.7e-10 Score=111.27 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccc--hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELP--RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp--~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
+.++++++.+..+|.. -.+.+++|++++ +..++ ..++.+++|++|+|++| .+..+|.+.+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 4677888888777653 234556777776 55553 23677777777777777 567776655777777777777777
Q ss_pred cCCC
Q 003317 594 KSSS 597 (831)
Q Consensus 594 ~~~~ 597 (831)
.+..
T Consensus 92 ~l~~ 95 (220)
T 2v70_A 92 RLEN 95 (220)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 6655
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=3.9e-10 Score=121.85 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=87.4
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccchh-hh-cCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRE-LK-ALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~-i~-~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
+.++++++.+..+|.. -.++++.|+|++ +..+|.. +. ++++|++|+|++| .+..+|.+.+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 3556666666666542 223456666665 4445433 33 5666666666666 466666545666666666666666
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeec
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQ 673 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 673 (831)
.+..+ ....+.+|++|+.|+++.+.+ ..+....+..+++|+.|+++
T Consensus 99 ~l~~~-------~~~~~~~l~~L~~L~L~~N~i---------------------------~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 99 HLHTL-------DEFLFSDLQALEVLLLYNNHI---------------------------VVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp CCCEE-------CTTTTTTCTTCCEEECCSSCC---------------------------CEECTTTTTTCTTCCEEECC
T ss_pred cCCcC-------CHHHhCCCcCCCEEECCCCcc---------------------------cEECHHHhCCcccCCEEECC
Confidence 55441 112233444444444432221 11111244556666666666
Q ss_pred CCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--ccccCC--CceEEEecc
Q 003317 674 FPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--LALAPN--VRNIGVSTC 726 (831)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~--L~~L~L~~c 726 (831)
+|....++...+. ....+++|+.|+|++| .+..+|. +..++. |+.|+|+++
T Consensus 145 ~N~l~~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 145 QNQISRFPVELIK-DGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCSCCGGGTC-----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcCCeeCHHHhc-CcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence 6655544433321 0113566677777665 4555542 445554 356666653
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=7.4e-10 Score=110.49 Aligned_cols=78 Identities=12% Similarity=0.236 Sum_probs=43.1
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
+.++.+++.+..+|... .++|+.|++++ +..+|. .+..+++|++|+|++| .+..++++.+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 35666777776666531 24566666655 444443 4555666666666665 4555433335566666666666555
Q ss_pred CCC
Q 003317 595 SSS 597 (831)
Q Consensus 595 ~~~ 597 (831)
+..
T Consensus 92 l~~ 94 (220)
T 2v9t_B 92 ITE 94 (220)
T ss_dssp CCC
T ss_pred CCc
Confidence 444
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.02 E-value=4.2e-10 Score=121.60 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=117.4
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--C-CCCCcccccccC--cCccc-hhhhcCCcccEEeccC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--P-ICPDLQTLFLKG--INELP-RELKALVNLKYLNLDH 567 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~-~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~ 567 (831)
.+...+..+..+| . .-...+++|+|++|.+..++.. . .+++|++|+|++ +..+| ..+.++++|++|+|++
T Consensus 22 ~l~c~~~~l~~iP---~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVP---Q-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCC---S-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccC---c-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3444555556665 1 2235789999999999998775 3 899999999998 77776 5689999999999999
Q ss_pred CCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceee
Q 003317 568 TTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYL 647 (831)
Q Consensus 568 ~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l 647 (831)
| .+..+|...+.++++|++|++++|.+..+ .+..+.++++|+.|+++.+.+..+..- .
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-------~~~~~~~l~~L~~L~L~~N~l~~l~~~--~------------ 155 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYNNHIVVV-------DRNAFEDMAQLQKLYLSQNQISRFPVE--L------------ 155 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCSCCGG--G------------
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCCCcccEE-------CHHHhCCcccCCEEECCCCcCCeeCHH--H------------
Confidence 9 68999887789999999999999998762 345567777777777775543321100 0
Q ss_pred ccccCCceeeeccccCCCCcceeeecCCCCCceeecccccCCCCCCC--ccEEEEEcCC
Q 003317 648 NVWEHSNWLDVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHS--LHTVRIYYCS 704 (831)
Q Consensus 648 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~c~ 704 (831)
...+..+++|+.|++++|....++...+.. +++ |+.|+|.+|+
T Consensus 156 ----------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 156 ----------IKDGNKLPKLMLLDLSSNKLKKLPLTDLQK----LPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----------TC----CTTCCEEECCSSCCCCCCHHHHHH----SCHHHHTTEECCSSC
T ss_pred ----------hcCcccCCcCCEEECCCCCCCccCHHHhhh----ccHhhcceEEecCCC
Confidence 001134566777777776655544443332 343 3666666653
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.01 E-value=9.5e-10 Score=110.44 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=96.3
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
..++.+++.+..+|.. -.++|++|+|++ +..+ |..++.+++|++|+|++| .+..+|...+.++++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc
Confidence 3567777777777763 237788888877 5554 566788888888888888 5788887667888888888888887
Q ss_pred CCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecC
Q 003317 595 SSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQF 674 (831)
Q Consensus 595 ~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 674 (831)
+..+ ....+..+++|+.|+++.+.+. .++ ..+..+++|+.|++++
T Consensus 100 l~~l-------~~~~~~~l~~L~~L~Ls~N~l~---------------------------~lp-~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 100 LTVL-------PSAVFDRLVHLKELFMCCNKLT---------------------------ELP-RGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCCC-------CTTTTTTCTTCCEEECCSSCCC---------------------------SCC-TTGGGCTTCSEEECCS
T ss_pred CCcc-------ChhHhCcchhhCeEeccCCccc---------------------------ccC-cccccCCCCCEEECCC
Confidence 7662 2223455666666665543321 111 1345667788888877
Q ss_pred CCCCceeecccccCCCCCCCccEEEEEcCC
Q 003317 675 PFLDDLKFGCVRVGTHAFHSLHTVRIYYCS 704 (831)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 704 (831)
|....++...+. .+++|+.|+|++|+
T Consensus 145 N~l~~~~~~~~~----~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 145 NQLKSIPHGAFD----RLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTT----TCTTCCEEECTTSC
T ss_pred CcCCccCHHHHh----CCCCCCEEEeeCCC
Confidence 766555443333 37778888887764
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=2.3e-09 Score=114.00 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=115.6
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... .++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~---~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL---GRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH---GGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc---CCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 56899999999999999877665699999999999999999998863 1111 1234443333222222 22222221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh-HHhh-ccCCce
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE-VCGA-MKAHEY 306 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~ 306 (831)
.... ..+ .+++.++|+||++.. ..+..+...+.....++.+|+||+... +... ......
T Consensus 97 ~~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 97 AQKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred Hhcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 1000 001 346889999999763 233333333322335677888776543 2111 223458
Q ss_pred EEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHHHH
Q 003317 307 FKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIGRA 360 (831)
Q Consensus 307 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~ 360 (831)
+.+.+++.++..+++...+...... -..+....|++.++|.|. |+..+...
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999887543311 124567889999999995 45554443
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=1.7e-09 Score=108.54 Aligned_cols=142 Identities=21% Similarity=0.225 Sum_probs=106.8
Q ss_pred ecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchh-hhcCCcccEEeccCCCCC
Q 003317 497 EAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTTFL 571 (831)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~~l 571 (831)
..+.....+| ..-..++++|+|++|.+..+++. ..+++|++|+|++ +..+|.. +..+++|++|+|++| .+
T Consensus 26 c~~~~l~~ip----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 26 CRSKRHASVP----AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp CTTSCCSSCC----SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred ccCCCcCccC----CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 3344455555 12247899999999999998553 7899999999998 7788754 689999999999999 78
Q ss_pred CCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc
Q 003317 572 HPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE 651 (831)
Q Consensus 572 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 651 (831)
..+|...+..+++|++|++++|.+.. .+..+.++++|+.|+++.+.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~~~~l~~L~~L~L~~N~l~------------------------ 148 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTE--------LPRGIERLTHLTHLALDQNQLK------------------------ 148 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCS--------CCTTGGGCTTCSEEECCSSCCC------------------------
T ss_pred CccChhHhCcchhhCeEeccCCcccc--------cCcccccCCCCCEEECCCCcCC------------------------
Confidence 99998778999999999999998876 3445566777777766644322
Q ss_pred CCceeeeccccCCCCcceeeecCCCCC
Q 003317 652 HSNWLDVLSLGELKNLHTLHMQFPFLD 678 (831)
Q Consensus 652 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 678 (831)
.++...+..+++|+.|++.+|+..
T Consensus 149 ---~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 ---SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ---CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ---ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 122124566788888888887643
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=3e-09 Score=106.03 Aligned_cols=116 Identities=13% Similarity=0.169 Sum_probs=87.1
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCC---CCCCCCcccccccC--cCccch-hhhcCCcccEEeccCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF---TPICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHT 568 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~---~~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~ 568 (831)
+...+..+..+| . .-...+++|++++|.+..+++ ...+++|++|+|++ +..+|. .++.+++|++|+|++|
T Consensus 16 l~~s~n~l~~iP---~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 16 VDCSNQKLNKIP---E-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EECCSSCCSSCC---S-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeCCCCcccCc---c-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 334444455555 1 223567899999999999854 37899999999998 677765 7899999999999999
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEe
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMS 622 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~ 622 (831)
.+..+|.+.+..+++|++|++++|.+..+ .+..+.++++|+.|+++
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTLMLRSNRITCV-------GNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEEECTTSCCCCB-------CTTSSTTCTTCSEEECT
T ss_pred -ccCccCHhHhcCCcCCCEEECCCCcCCeE-------CHhHcCCCccCCEEECC
Confidence 78999887799999999999999988762 23334445555555444
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=1.6e-09 Score=103.02 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=71.8
Q ss_pred ccceeEEEecccccc--ccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCC-CChhhhcCCccCcE
Q 003317 514 WKGVRKISLMQNQIR--NLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHP-IPSPLISSFSMLLV 587 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~--~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~-lp~~~i~~L~~L~~ 587 (831)
..++++|++++|.+. .+|.. ..+++|++|++++ +..+ ..++.+++|++|++++| .+.. +|. .+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDM-LAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCH-HHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHH-HHhhCCCCCE
Confidence 367889999988887 67766 6778888888876 5555 56777888888888888 4565 554 3666888888
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
|++++|.+..+ ..+..+.++++|+.|+++.+.
T Consensus 100 L~Ls~N~l~~~------~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 100 LNLSGNKLKDI------STLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EECBSSSCCSS------GGGGGGSSCSCCCEEECCSSG
T ss_pred EeccCCccCcc------hhHHHHhcCCCCCEEEeeCCc
Confidence 88888776652 122456666666666665444
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=1.8e-09 Score=103.47 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=85.5
Q ss_pred cccccceeEEEeccccccccCCCCCCC-CcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcE
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICP-DLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLV 587 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~-~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~ 587 (831)
+..+.++++|++++|.+..+|....+. +|++|++++ +..+ ..++.+++|++|++++| .+..+|++.++.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 445678999999999999887765554 999999998 6666 57888999999999999 688888765589999999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
|++++|.+..+ + .+..+.++++|+.|++..+.+.
T Consensus 93 L~L~~N~i~~~-----~-~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLVEL-----G-DLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCCCG-----G-GGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCCcc-----h-hhHhhhcCCCCCEEEecCCCCC
Confidence 99999988652 1 2336777788888887766543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=1.1e-08 Score=99.56 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=59.7
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccC
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKS 595 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 595 (831)
++++++++.+..+|.. -.++|++|++++ +..+|..+..+++|++|+|++| .+..++.+.+.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4678888888888754 246788888876 6777777888888888888888 67777766678888888888888776
Q ss_pred CC
Q 003317 596 SS 597 (831)
Q Consensus 596 ~~ 597 (831)
..
T Consensus 91 ~~ 92 (193)
T 2wfh_A 91 RC 92 (193)
T ss_dssp CB
T ss_pred CE
Confidence 65
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=3.6e-09 Score=98.27 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=79.5
Q ss_pred ccceeEEEecccccc--ccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCC-CChhhhcCCccCcE
Q 003317 514 WKGVRKISLMQNQIR--NLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHP-IPSPLISSFSMLLV 587 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~--~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~-lp~~~i~~L~~L~~ 587 (831)
..++++|++++|.+. .+|.. ..+++|++|++++ +..+ ..++.+++|++|++++| .+.. +|. .++++++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEV-LAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHH-HHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHH-HhhhCCCCCE
Confidence 378999999999988 67766 7888999999887 5555 66788889999999988 5666 555 4777889999
Q ss_pred eeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 588 LRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 588 L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
|++++|.+..+ ..+..+.++++|+.|+++.+.+.
T Consensus 93 L~ls~N~i~~~------~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 93 LNLSGNKIKDL------STIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EECTTSCCCSH------HHHGGGGGCTTCCEEECTTCGGG
T ss_pred EECCCCcCCCh------HHHHHHhhCCCCCEEeCcCCccc
Confidence 99988887651 12356677777777777655543
No 137
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.81 E-value=1.7e-07 Score=99.37 Aligned_cols=270 Identities=15% Similarity=0.083 Sum_probs=138.6
Q ss_pred CCcccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
..++|++..++.+..++.. .....|.|+|++|+|||++|+.+++... .. .+++..+......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~----~~---~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG----VN---LRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----CC---EEEECTTTCCSHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----CC---EEEEeccccCChHHHHH--
Confidence 6789999999988887742 3456789999999999999999998753 22 23444333322222211
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCC--------C----------CCCCcE
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLP--------S----------PTTASK 287 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs~ 287 (831)
.+ ... ..++.+|+|||+.... ....+...+. . ...+.+
T Consensus 83 --~l-------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 --IL-------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp --HH-------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred --HH-------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11 100 1245688888886532 1111100000 0 012345
Q ss_pred EEEEcCChh-HHhhc-cC-CceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhcc-
Q 003317 288 VVFTTRFVE-VCGAM-KA-HEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRAMAC- 363 (831)
Q Consensus 288 ilvTtR~~~-v~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~- 363 (831)
+|.||.... +...+ .. ...+.+.+++.++...++.+.+..... .-..+....|++.++|.|..+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666655332 21111 11 257899999999999999888754331 122467789999999999887766554421
Q ss_pred -----C--CChhHHHHHHHHHhcccCCCCCch-hhhhHHhhccCCCCchhHHHHHHHHhcCCCCccccHHHHH----HHH
Q 003317 364 -----K--KQPEDWKYAIQVLRRSASEFPGMD-EVYPRLKFSYDSLPGEKIRSCFLYCCLFPEDYKIHKMSLI----DYW 431 (831)
Q Consensus 364 -----~--~~~~~w~~~l~~l~~~~~~~~~~~-~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li----~~W 431 (831)
. -+.+....++..+..........+ .+...+...|..=+. ....+-..++ +++..+. .+-
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~ 289 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYL 289 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHH
Confidence 1 123334443333221110011011 111111112211111 1222222222 2332222 234
Q ss_pred HhcCCCCCcc-hhhHHHHHHHHHH-HHHhcccccc
Q 003317 432 ISEKILDNND-RSRAINEGYYIIG-VVLHSCLLEE 464 (831)
Q Consensus 432 ~aeg~i~~~~-~~~~~~~~~~~~~-~L~~~~ll~~ 464 (831)
+..|++.... +....+.|..|++ ++.+|+|+|+
T Consensus 290 i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 290 IRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5678885433 3566677888887 8888888875
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.80 E-value=3.1e-09 Score=125.33 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=54.5
Q ss_pred chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHH
Q 003317 551 PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALE 630 (831)
Q Consensus 551 p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~ 630 (831)
|..+..+.+|++|+|++| .+..+|.+ +.+|++|++|+|++|.+.. .+..+.+|++|+.|+++.+.+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~~--------lp~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLTE--------LPAEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCSC--------CCGGGGGGTTCCEEECTTSCCSS--
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCcc--------cChhhhCCCCCCEEeCcCCcCCc--
Confidence 444555555555555555 34455554 4455555555555554443 22334445555555555444331
Q ss_pred HHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCCc
Q 003317 631 RFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLDD 679 (831)
Q Consensus 631 ~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 679 (831)
++.....+.+|+.|+|+++. ...++. .+..+++|+.|+|++|....
T Consensus 285 -lp~~~~~l~~L~~L~L~~N~-l~~lp~-~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 285 -LPAELGSCFQLKYFYFFDNM-VTTLPW-EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp -CCSSGGGGTTCSEEECCSSC-CCCCCS-STTSCTTCCCEECTTSCCCS
T ss_pred -cChhhcCCCCCCEEECCCCC-CCccCh-hhhcCCCccEEeCCCCccCC
Confidence 11111122345555555553 333332 36666777777777776554
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=6.1e-09 Score=118.88 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=89.0
Q ss_pred cceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecc
Q 003317 515 KGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFN 592 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 592 (831)
..++.|++++|.+..+|....+++|++|+|++ +..+|..+++|++|++|+|++| .++.+| . +++|++|++|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCC
Confidence 35889999999999998888999999999998 7889999999999999999999 688898 4 99999999999999
Q ss_pred ccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 593 CKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
|.+..+ ..+..+.+|++|+.|+++.+.+.
T Consensus 518 N~l~~~------~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 518 NRLQQS------AAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SCCCSS------STTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCC------CCcHHHhcCCCCCEEEecCCcCC
Confidence 988772 11667888888888888766544
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.75 E-value=2.9e-08 Score=94.19 Aligned_cols=110 Identities=23% Similarity=0.242 Sum_probs=89.3
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCc-cchhhhcCCcccEEeccCCCCCCCCCh-hhhcCCccC
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INE-LPRELKALVNLKYLNLDHTTFLHPIPS-PLISSFSML 585 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~-lp~~i~~L~~Lr~L~L~~~~~l~~lp~-~~i~~L~~L 585 (831)
.+..+.++++|++++|.+..++....+++|++|++++ +.. +|..++.+++|++|++++| .+..+|. ..+..+++|
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECL 122 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCC
T ss_pred HHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCC
Confidence 3477899999999999999886668999999999998 555 8888888999999999999 7888873 348999999
Q ss_pred cEeeeccccCCCcccccccc-chhhhcCCcCCCceeEeecc
Q 003317 586 LVLRMFNCKSSSMANVVREV-LIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~L~~L~i~~~~ 625 (831)
++|++++|.+..+ +. ....+..+++|+.|++..+.
T Consensus 123 ~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 123 KSLDLFNCEVTNL-----NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECCSSGGGTS-----TTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEEeeCCcCcch-----HHHHHHHHHhCccCcEecCCCCC
Confidence 9999999988762 11 11356777788777776543
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.75 E-value=4.7e-09 Score=123.76 Aligned_cols=108 Identities=27% Similarity=0.305 Sum_probs=93.2
Q ss_pred ccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
.+..+..++.|+|++|.+..+|.. ..+++|++|+|++ +..+|..+++|++|++|+|++| .+..+|.. +++|++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCC
Confidence 345668899999999999998875 7899999999998 7899999999999999999999 68899986 99999999
Q ss_pred EeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 587 VLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 587 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
+|+|++|.+.. .+..+.+|++|+.|+++.+.+.
T Consensus 297 ~L~L~~N~l~~--------lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNMVTT--------LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSCCCC--------CCSSTTSCTTCCCEECTTSCCC
T ss_pred EEECCCCCCCc--------cChhhhcCCCccEEeCCCCccC
Confidence 99999998876 3445888899999999877654
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.2e-08 Score=105.19 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=112.7
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCC-CEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDF-DVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... - ..+ ...+.+..+...... ..+..+..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--G-ENWRHNFLELNASDERGIN-VIREKVKEF 100 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--G-GGHHHHEEEEETTCHHHHH-TTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--C-CcccCceEEeeccccCchH-HHHHHHHHH
Confidence 56899999999999999877766799999999999999999998863 1 111 122333332211111 011111110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChhH-Hhh-ccCCceE
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVEV-CGA-MKAHEYF 307 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~~~~ 307 (831)
.... ....+++.++|+||++.. ..+..+...+.....++++|+||....- ... ......+
T Consensus 101 ~~~~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 101 ARTK----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHSC----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HhhC----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 0000 001256889999999754 2233333333223456788888775431 111 1123478
Q ss_pred EcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHHHH
Q 003317 308 KVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIGRA 360 (831)
Q Consensus 308 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 360 (831)
.+.+++.++...++.+.+...... -..+..+.|++.++|.|..+..+...
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999998877543311 12456788999999999865544433
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.73 E-value=2.9e-08 Score=96.52 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=46.0
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccchh--hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRE--LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~--i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
++++++++.+..+|.. -.++|++|++++ +..+|.. ++.+++|++|+|++| .+..+++..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777653 122566666665 4455432 566666666666666 455553334666666666666666
Q ss_pred cCCC
Q 003317 594 KSSS 597 (831)
Q Consensus 594 ~~~~ 597 (831)
.+..
T Consensus 89 ~l~~ 92 (192)
T 1w8a_A 89 KIKE 92 (192)
T ss_dssp CCCE
T ss_pred cCCc
Confidence 5544
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.72 E-value=2.1e-08 Score=96.04 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=94.2
Q ss_pred cCCCceeecccccccccc-ceeEEEeccccccccCCCCCCCCcccccccC--cCccchhh-hcCCcccEEeccCCCCCCC
Q 003317 498 AGAGLTEVQVLQGIERWK-GVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPREL-KALVNLKYLNLDHTTFLHP 573 (831)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~-~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i-~~L~~Lr~L~L~~~~~l~~ 573 (831)
.+.....+| .+..+. ++++|++++|.+..++....+++|++|++++ +..+|..+ +.+++|++|++++| .+..
T Consensus 27 ~~n~l~~i~---~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~ 102 (176)
T 1a9n_A 27 RGYKIPVIE---NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVE 102 (176)
T ss_dssp TTSCCCSCC---CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCC
T ss_pred eCCCCchhH---HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCc
Confidence 333444444 455555 9999999999999987779999999999998 77888655 99999999999999 6888
Q ss_pred CCh-hhhcCCccCcEeeeccccCCCccccccccc-hhhhcCCcCCCceeEeecchh
Q 003317 574 IPS-PLISSFSMLLVLRMFNCKSSSMANVVREVL-IDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 574 lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~~L~~L~i~~~~~~ 627 (831)
+|. ..++.+++|++|++++|.+..+ +.. ...+..+++|+.|++..+...
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N~i~~~-----~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRNPVTNK-----KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSSGGGGS-----TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhHhhhcCCCCCEEEecCCCCCCc-----HhHHHHHHHHCCccceeCCCcCCHH
Confidence 886 2388999999999999988762 211 123677888888888766654
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.71 E-value=1.8e-08 Score=97.99 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=95.5
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCC---CCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPF---TPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHT 568 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~---~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~ 568 (831)
+...+..+..+| . .-..++++|++++|.+..++. ...+++|++|+|++ +..+ |..++.+++|++|+|++|
T Consensus 13 l~~s~~~l~~ip---~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 13 VDCTGRGLKEIP---R-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EECTTSCCSSCC---S-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCCcCcCc---c-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 444455555666 1 123489999999999999876 37899999999998 6666 778999999999999999
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
.+..+|...+.++++|++|++++|.+..+ .+..+..+++|+.|++..+.+
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCV-------MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEE-------CTTSSTTCTTCCEEECTTCCB
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCee-------CHHHhhcCCCCCEEEeCCCCc
Confidence 68888876789999999999999988762 345677788888888876543
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.71 E-value=3.1e-08 Score=96.31 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=95.3
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC-CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTT 569 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~ 569 (831)
.+...+..+..+| . .-..++++|++++|.+..+|.. ..+++|++|+|++ +..++ ..+..|++|++|+|++|
T Consensus 14 ~l~~~~~~l~~ip---~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLP---K-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp EEECTTSCCSSCC---S-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEcCCCCCCcCC---C-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 3444455555665 1 1236899999999999999855 8899999999998 77776 56899999999999999
Q ss_pred CCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 570 FLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 570 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
.+..+|...+..+++|++|++++|.+..+ ....+..+++|+.|++..+.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV-------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee-------ChhhhhcCccccEEEeCCCCe
Confidence 78999887799999999999999998872 223466777888888775543
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=3.4e-08 Score=105.15 Aligned_cols=238 Identities=9% Similarity=0.020 Sum_probs=132.7
Q ss_pred ccceeEEEeccccccccCCC-CCCCCcccccccCcCccc-hhhhc--------CCcccEEeccCCCCCCCCChhhhcCCc
Q 003317 514 WKGVRKISLMQNQIRNLPFT-PICPDLQTLFLKGINELP-RELKA--------LVNLKYLNLDHTTFLHPIPSPLISSFS 583 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~-~~~~~Lr~L~L~~~~~lp-~~i~~--------L~~Lr~L~L~~~~~l~~lp~~~i~~L~ 583 (831)
+.++++|+|++|.+...... ..++.++.+.+.. ..+| ..+.+ |.+|+.|+|.+ .++.++..++..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~-~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMA-NFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECT-TEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccc-cccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence 46788888888887721111 2222233333322 2333 23445 77777777777 36777776777777
Q ss_pred cCcEeeeccccCCCccccccccchhhhcCCcCCCceeE---------------------------eecchhHHHHHh-hc
Q 003317 584 MLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSM---------------------------SLHSIRALERFL-SF 635 (831)
Q Consensus 584 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i---------------------------~~~~~~~l~~l~-~~ 635 (831)
+|++|++.++.+..++ +..+.. +.++..+.. .......++... ..
T Consensus 125 ~L~~l~l~~n~i~~i~----~~aF~~---~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLL----PEALAD---SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TCCEEEBCCSSCCEEC----TTSSCT---TTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred ccceEEcCCCCccccc----hhhhcC---CCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 7777777776654421 111111 111111111 111111111111 00
Q ss_pred ccccccccceeeccccCCceeeecccc-CCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc--c
Q 003317 636 HKLKSCTGSLYLNVWEHSNWLDVLSLG-ELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW--L 712 (831)
Q Consensus 636 ~~l~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l 712 (831)
.-...++..+.+.+.-. ......+. .+++|++|++.+|....++...+. .+++|+.|+|.++ ++.++. +
T Consensus 198 ~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~----~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPDFTFA----QKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp TCCGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT----TCTTCCEEECCTT--CCEECTTTT
T ss_pred ccCccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecHhhhh----CCCCCCEEECCcc--cceehHHHh
Confidence 00112333444433211 00000111 378999999998877667666554 4889999999874 666653 7
Q ss_pred cccCCCc-eEEEecccCccccccCCccccccCCCCCCccceecccccccccccCCC-CCCCCCccEEee
Q 003317 713 ALAPNVR-NIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRV 779 (831)
Q Consensus 713 ~~l~~L~-~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l 779 (831)
..+++|+ .|.+.+ .++.+... .+.++++|+.|.+.+ .+++.++.. ...+++|+.|+.
T Consensus 270 ~~~~~L~~~l~l~~--~l~~I~~~-------aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA--SVTAIEFG-------AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT--TCCEECTT-------TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc--cceEEchh-------hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 7899999 999987 56666543 677899999999876 477777653 345777777653
No 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=2.4e-08 Score=92.60 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=85.7
Q ss_pred ccccccceeEEEeccccccccCCCCCCCCcccccccC--cCc-cchhhhcCCcccEEeccCCCCCCCCCh-hhhcCCccC
Q 003317 510 GIERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INE-LPRELKALVNLKYLNLDHTTFLHPIPS-PLISSFSML 585 (831)
Q Consensus 510 ~~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~-lp~~i~~L~~Lr~L~L~~~~~l~~lp~-~~i~~L~~L 585 (831)
.+..+.++++|++++|.+..++....+++|++|++++ +.. +|..++.+++|++|++++| .+..+|. ..++.+++|
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence 4567899999999999999886668999999999998 665 8888889999999999999 6888751 248999999
Q ss_pred cEeeeccccCCCcccccccc-chhhhcCCcCCCceeE
Q 003317 586 LVLRMFNCKSSSMANVVREV-LIDELVQLDHLNELSM 621 (831)
Q Consensus 586 ~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~~L~~L~i 621 (831)
++|++++|.+..+ +. ....+..+++|+.|++
T Consensus 116 ~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 116 KSLDLFNCEVTNL-----NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTCGGGGS-----TTHHHHHHHHCTTCCEETT
T ss_pred CEEeCcCCcccch-----HHHHHHHHHHCCCcccccC
Confidence 9999999988762 11 1135666777776654
No 149
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.3e-07 Score=96.30 Aligned_cols=170 Identities=9% Similarity=0.069 Sum_probs=105.6
Q ss_pred cccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCC-CC--CEEEEEEeCCCCCHHHHHHHH
Q 003317 155 TVGLESTLDKVWSCLG----EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD-DF--DVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~F--~~~~wv~~s~~~~~~~~~~~i 227 (831)
+.||++++++|...|. ++..+.+.|+|++|+|||++|+.|++...+.... .. -..+.+++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6899999999987774 3578899999999999999999999998522111 11 145677777778889999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHH---cCCcEEEEEcCCCCcccccccccCC--CCCCCC-cEEEEEcCChh-----
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVL---SKKKFVLLLDDMWKRVDLTQLGVPL--PSPTTA-SKVVFTTRFVE----- 296 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l--~~~~~g-s~ilvTtR~~~----- 296 (831)
++++...... .....+ ....+...+ .+++++++||+++....-+.+...+ +....+ .-||.++...+
T Consensus 102 ~~~L~g~~~~-~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLC-GDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC---CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCC-chHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9999653211 122223 333333333 4578999999997643211111111 111111 22333343221
Q ss_pred H----HhhccCCceEEcCCCChHHHHHHHHHHhhh
Q 003317 297 V----CGAMKAHEYFKVECLAHEKAWILFQEHVER 327 (831)
Q Consensus 297 v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 327 (831)
+ ...+ ....+.+.+++.+|-.+++.+++..
T Consensus 180 L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 INIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1122 1246899999999999999998754
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.65 E-value=8.1e-08 Score=91.98 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=80.2
Q ss_pred ccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchh-hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 514 WKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
..++++|++++|.+..++.. ..+++|++|++++ +..+|.. ++.+++|++|++++| .+..+|...+.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 36888999998888887764 6788899999887 6667654 588889999999988 6788887667888899999
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
++++|.+..+ ....+..+++|+.|++..+.+
T Consensus 106 ~l~~N~l~~~-------~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTNQLKSV-------PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCSCC-------CTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcceEe-------CHHHhcCCcccCEEEecCCCe
Confidence 9988877762 223346677777777776543
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.63 E-value=3.3e-09 Score=103.87 Aligned_cols=72 Identities=24% Similarity=0.250 Sum_probs=51.5
Q ss_pred cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 547 INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 547 ~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
++.+|..++.+++|++|++++| .+..+| . +.++++|++|++++|.+.. .+..+..+++|+.|+++.+.+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~--------l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKK--------IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECS--------CSSHHHHHHHCSEEEEEEEEC
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCccc--------ccchhhcCCcCCEEECcCCcC
Confidence 5667778888999999999988 678888 3 8888999999998887765 222334445566666665554
Q ss_pred hHH
Q 003317 627 RAL 629 (831)
Q Consensus 627 ~~l 629 (831)
..+
T Consensus 106 ~~l 108 (198)
T 1ds9_A 106 ASL 108 (198)
T ss_dssp CCH
T ss_pred CcC
Confidence 433
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.61 E-value=1.4e-07 Score=90.21 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=47.4
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
+.++++++++..+|.. ..++|++|++++ +..+|. .++.+++|++|++++| .+..+|...++++++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 4667777777776642 335666666665 444543 3456666666666666 4566665545666666666666665
Q ss_pred CCC
Q 003317 595 SSS 597 (831)
Q Consensus 595 ~~~ 597 (831)
+..
T Consensus 88 l~~ 90 (177)
T 2o6r_A 88 LQS 90 (177)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.61 E-value=2.2e-07 Score=98.26 Aligned_cols=179 Identities=14% Similarity=0.196 Sum_probs=111.7
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-VVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~---~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF---GENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH---TTCHHHHCEEEETTSTTCTT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc---CCcccCCeEEEeCccccChH----------
Confidence 56799999999999998877666699999999999999999998853 11111 12333333221100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--H-cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh-HHhh-ccCC
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRV--L-SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE-VCGA-MKAH 304 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 304 (831)
...+....+... + .+++-++|+||++.. .....+...+.....+.++|+||.... +... ....
T Consensus 84 ----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ----------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ----------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 111111111111 1 256889999999753 223444444443345677777776543 2111 1233
Q ss_pred ceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 305 EYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 305 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
..+.+.+++.++...++.+.+...... -..+....|++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 589999999999999998877543311 22456788889999998765443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=1.2e-07 Score=90.46 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=65.9
Q ss_pred eEEEeccccccccCCCCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 518 RKISLMQNQIRNLPFTPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 518 r~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
+.++++++.+..+|... .++|++|+|++ +..+ |..++++++|++|+|++| .+..+|...+.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 45677777777776642 36777777776 5555 456777777777777777 6777777655777777777777777
Q ss_pred CCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 595 SSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 595 ~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
+..+ ....+.++++|+.|++..+.
T Consensus 93 l~~l-------~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSI-------PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCC-------CTTTTTTCTTCSEEECCSSC
T ss_pred ccee-------CHHHhccccCCCEEEeCCCC
Confidence 6652 12235566666666666544
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.56 E-value=1.3e-07 Score=89.89 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=71.5
Q ss_pred eeEEEeccccccccCCCCCCCCcccccccC--cCcc-chhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 517 VRKISLMQNQIRNLPFTPICPDLQTLFLKG--INEL-PRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 517 lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~l-p~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
.+.++++++.+..+|... .++|++|+|++ +..+ |..++.+++|++|+|++| .+..+|.+.+.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 356777888887777543 37788888877 6666 556778888888888888 677888766678888888888888
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecc
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHS 625 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~ 625 (831)
.+..+ ....+.++++|+.|++..+.
T Consensus 89 ~l~~~-------~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSI-------PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred ccCEe-------CHHHhcCCCCCCEEEeCCCC
Confidence 77662 22346667777777776554
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=7.8e-07 Score=96.36 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=110.0
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|++..++.+.+.+..+. .+.+.|+|++|+||||+|+.+++... ....+. ...+........+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~--~~~~~~-------~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN--CETGIT-------ATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS--CTTCSC-------SSCCSSSHHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCCCCC-------CCCCcccHHHHHHhccC
Confidence 568999999999999987654 46789999999999999999998764 111110 00000000111111000
Q ss_pred C-----CCCC-CCCCCCHHHHHHHHHHH-HcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh-HH-hh
Q 003317 232 G-----LCDN-SWRSKSLEDKAVDIFRV-LSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE-VC-GA 300 (831)
Q Consensus 232 ~-----~~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~ 300 (831)
. .... ........+....+... ..+++.++|+||+... ..+..+...+.....+..+|++|.... +. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0 0000 00111222222111110 1356789999999653 223333322322234566676665432 21 11
Q ss_pred ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 301 MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 301 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
......+.+.+++.++..+++.+.+...... -..+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2234688999999999999998877543311 124567889999999998776544
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.53 E-value=1.9e-07 Score=89.02 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=82.1
Q ss_pred eEEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchh-hhcCCcccEEeccCC
Q 003317 494 YLVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHT 568 (831)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~ 568 (831)
.+...+..+..+| . .-..++++|+|++|.+..+++. ..+++|++|+|++ +..+|.. ++++++|++|+|++|
T Consensus 16 ~l~~~~n~l~~iP---~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVP---A-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCC---S-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccC---C-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4445555566666 2 2237899999999999998653 7899999999998 8888876 589999999999999
Q ss_pred CCCCCCChhhhcCCccCcEeeeccccCCC
Q 003317 569 TFLHPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 569 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
.+..+|.+.+.++++|++|++++|.+..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7899998779999999999999997765
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=1.2e-07 Score=91.83 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=42.6
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++||+..++++.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999877777889999999999999999998864
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.45 E-value=4e-07 Score=86.36 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=80.8
Q ss_pred EEecCCCceeeccccccccccceeEEEeccccccccCCC--CCCCCcccccccC--cCccchh-hhcCCcccEEeccCCC
Q 003317 495 LVEAGAGLTEVQVLQGIERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG--INELPRE-LKALVNLKYLNLDHTT 569 (831)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp~~-i~~L~~Lr~L~L~~~~ 569 (831)
+...+..+..+| . .-..++++|+|++|.+..+++. ..+++|++|+|++ +..+|.. +..+++|++|+|++|
T Consensus 14 l~~s~n~l~~ip---~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 14 VDCSGKSLASVP---T-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp EECTTSCCSSCC---S-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEeCCCCcCccC---c-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 344445555565 1 2247899999999999998654 7899999999998 7788765 589999999999999
Q ss_pred CCCCCChhhhcCCccCcEeeeccccCCC
Q 003317 570 FLHPIPSPLISSFSMLLVLRMFNCKSSS 597 (831)
Q Consensus 570 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 597 (831)
.+..+|.+.+.++++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7899998778999999999999997764
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=2.6e-07 Score=98.15 Aligned_cols=250 Identities=13% Similarity=0.097 Sum_probs=138.2
Q ss_pred cccceeEEEeccccc-cccCCCC-CCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcC-------
Q 003317 513 RWKGVRKISLMQNQI-RNLPFTP-ICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISS------- 581 (831)
Q Consensus 513 ~~~~lr~L~l~~~~i-~~lp~~~-~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~------- 581 (831)
.+.+++.|.++++-- ..+.... .+++|++|+|++ +......-+.++.++++.+..+ .+|..++.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 356777887775410 0111111 277788888876 3311111223333455555554 577777888
Q ss_pred -CccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeecccc---CCceee
Q 003317 582 -FSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWE---HSNWLD 657 (831)
Q Consensus 582 -L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~---~~~~~~ 657 (831)
+++|++|++.. .+..+ ....+.++++|+.+.+..+.+..+..- .+.. +..+..+...... ....+.
T Consensus 99 g~~~L~~l~L~~-~i~~I-------~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~-~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNI-------EDAAFKGCDNLKICQIRKKTAPNLLPE-ALAD-SVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp ECTTCCC-CBCT-TCCEE-------CTTTTTTCTTCCEEEBCCSSCCEECTT-SSCT-TTCEEEECTTCTHHHHTSTTTT
T ss_pred ccCCCcEEECCc-cccch-------hHHHhhcCcccceEEcCCCCccccchh-hhcC-CCceEEecCcchhhhhcccccc
Confidence 99999999988 66552 233456677777777765443211110 0000 1112222211100 000000
Q ss_pred eccccCC--------------------------CCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCCCCCCCc
Q 003317 658 VLSLGEL--------------------------KNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLTW 711 (831)
Q Consensus 658 ~~~l~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 711 (831)
...+..+ .++..+.+.+.-... ....+. ..+++|+.|+|.+| .++.++.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~l~---~~~~~L~~l~L~~n-~i~~I~~ 243 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKLIR---DYMPNLVSLDISKT-NATTIPD 243 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHHHH---HHCTTCCEEECTTB-CCCEECT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH-HHHHHH---HhcCCCeEEECCCC-CcceecH
Confidence 0011122 233333333321100 000110 12689999999886 4666664
Q ss_pred --ccccCCCceEEEecccCccccccCCccccccCCCCCCccc-eecccccccccccCC-CCCCCCCccEEeecCCCCCCC
Q 003317 712 --LALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLE-YLVLENLMNLKSIYW-SPLPFPQLMEIRVNGCPILQK 787 (831)
Q Consensus 712 --l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~i~~-~~~~~p~L~~L~l~~C~~L~~ 787 (831)
+..+++|+.|++.+. ++.++.. .+.++++|+ .|.+.+ +++.++. ....+++|+.|++.+ .+++.
T Consensus 244 ~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCE
T ss_pred hhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCc
Confidence 778999999999873 7777553 677889999 999987 7777764 345689999999865 57888
Q ss_pred CCCCCc
Q 003317 788 LPLDSS 793 (831)
Q Consensus 788 lp~~~~ 793 (831)
++...-
T Consensus 312 I~~~aF 317 (329)
T 3sb4_A 312 LGDELF 317 (329)
T ss_dssp ECTTTT
T ss_pred cchhhh
Confidence 776543
No 161
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.41 E-value=1.5e-08 Score=99.18 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=66.8
Q ss_pred cccccceeEEEeccccccccCCCCCCCCcccccccC--cCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 511 IERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKG--INELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~--~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
+..+.++++|++++|.+..+|....+++|++|++++ +..+|..++.+++|++|++++| .+..+|. ++++++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCCCEE
Confidence 445566777777777776666446666677777765 5566666666667777777776 5666652 6666677777
Q ss_pred eeccccCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 589 RMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
++++|.+..+ ..+..+.++++|+.|++..+.+
T Consensus 121 ~l~~N~i~~~------~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 121 YMSNNKITNW------GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EESEEECCCH------HHHHHHTTTTTCSEEEECSCHH
T ss_pred ECCCCcCCch------hHHHHHhcCCCCCEEEecCCcc
Confidence 7776666541 1123556666666666665544
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=4.9e-07 Score=91.19 Aligned_cols=171 Identities=9% Similarity=0.056 Sum_probs=102.5
Q ss_pred CCcccc---hHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGL---ESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
+.++|. +..++.+..++.....+.+.|+|++|+||||+|+.+++... .....+.|+.++...+. +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~----~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN----ELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEGGGGGGS------CGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH----HcCCeEEEEEHHHHHHH------HHH
Confidence 456763 35566666666555678899999999999999999999875 22334566665432110 000
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----ccccccCCCC-CCCC-cEEEEEcCChh-------
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----LTQLGVPLPS-PTTA-SKVVFTTRFVE------- 296 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~ilvTtR~~~------- 296 (831)
. + +.+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...
T Consensus 98 ~-------------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 L-------------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp G-------------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred H-------------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 0 011 3467899999965321 1222111110 0112 24777766321
Q ss_pred --HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 297 --VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 297 --v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
+...+.....+.+.+++.++..+++...+..... .-..+....|++.++|.+-.+..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 2222222367899999999999999988764331 223566788999999988766543
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.37 E-value=3.4e-06 Score=92.86 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=107.4
Q ss_pred Ccc-cchH--HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 154 PTV-GLES--TLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 154 ~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
.|+ |... ....+........ ...+.|+|++|+||||||+.+++... ....-..+++++. ..+..++..
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~--~~~~~~~v~~v~~------~~~~~~~~~ 177 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH--HHCCSSCEEEEEH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEeeH------HHHHHHHHH
Confidence 455 6433 2333444443333 67899999999999999999999864 1111123455533 334445555
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----ccccccCCCC-CCCCcEEEEEcCCh---------
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----LTQLGVPLPS-PTTASKVVFTTRFV--------- 295 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~ilvTtR~~--------- 295 (831)
.+... .. ..+...+..++-+|++||++.... .+.+...+.. ...|..||+||.+.
T Consensus 178 ~~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 44321 11 223334444677999999965321 2222222110 13467888888752
Q ss_pred hHHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 296 EVCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 296 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.+...+.....+.+.+++.++-..++.+.+.......++ +....|++.+.|.+-.+..
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 233334445678999999999999999887654322222 3467888999998865543
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=1e-06 Score=91.40 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=101.8
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
..++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++... ..| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~---~~v~~~~~~~ 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN----ATF---IRVVGSELVK 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT----CEE---EEEEGGGGCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCE---EEEehHHHHH
Confidence 5679999999999887732 3556799999999999999999998864 222 2232221110
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc------------c----ccccccCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV------------D----LTQLGVPLP--S 281 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 281 (831)
. ............+......++.+|+|||+.... . +..+...+. .
T Consensus 90 --------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 --------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp --------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred --------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 011111122222333334567899999995420 0 111111110 1
Q ss_pred CCCCcEEEEEcCChhHH-----hhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC-CchHHH
Q 003317 282 PTTASKVVFTTRFVEVC-----GAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG-LPLALI 355 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~ 355 (831)
...+..||.||...... +.......+.+...+.++..++|...+.......... ...+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 22356677788754321 1111224689999999999999988876543222223 4567777777 444444
Q ss_pred H
Q 003317 356 T 356 (831)
Q Consensus 356 ~ 356 (831)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=7e-06 Score=92.56 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=108.2
Q ss_pred CCcccchHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeC
Q 003317 153 EPTVGLESTLDKVWSCLGE-----------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVS 215 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s 215 (831)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.++.+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~------~-~~i~in~s 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG------Y-DILEQNAS 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT------C-EEEEECTT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC------C-CEEEEeCC
Confidence 5679999999999999864 1347999999999999999999998752 2 23445555
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH--HHcCCcEEEEEcCCCCccc-----ccccccCCCCCCCCcEE
Q 003317 216 KDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR--VLSKKKFVLLLDDMWKRVD-----LTQLGVPLPSPTTASKV 288 (831)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~i 288 (831)
...... +....+....... ..........+ ...+++.+||+|++..... +..+...+.. .+..|
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred CcchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 544433 2233222221100 00000000000 1135788999999965321 1222111111 12335
Q ss_pred EEEcCChh---HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC-chHHHHHHH
Q 003317 289 VFTTRFVE---VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL-PLALITIGR 359 (831)
Q Consensus 289 lvTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~~ 359 (831)
|+++.+.. +.........+.+.+++.++..+.+.+.+.......++ +....|++.++|. +-++..+..
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 44443321 22222234578999999999999998887654433332 3477889999995 455555533
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.33 E-value=1.2e-05 Score=88.42 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=104.7
Q ss_pred CCcccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHH
Q 003317 153 EPTVGLESTL---DKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIW 228 (831)
Q Consensus 153 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~ 228 (831)
+.++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++... ..| +.++.. ..... .+.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~----~~f-----~~l~a~~~~~~~-ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN----ADV-----ERISAVTSGVKE-IREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT----CEE-----EEEETTTCCHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC----CCe-----EEEEeccCCHHH-HHHHH
Confidence 5689999888 6777888777788999999999999999999998864 222 222222 12221 11111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh--H-HhhccC
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE--V-CGAMKA 303 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~--v-~~~~~~ 303 (831)
... ......+++.+|++|++... ...+.+...+.. +.-.-|..||.+.. + ......
T Consensus 96 ~~a------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 ERA------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHH------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHH------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCc
Confidence 110 00112467889999999753 223333332322 12222333655543 1 111223
Q ss_pred CceEEcCCCChHHHHHHHHHHhhhccc----CCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 304 HEYFKVECLAHEKAWILFQEHVERQTL----ESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 304 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
...+.+.+++.++...++.+.+..... ....-..+..+.|++.++|.+-.+..+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 457899999999999999888754110 001123456788888899988655443
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.29 E-value=6.5e-06 Score=89.50 Aligned_cols=254 Identities=12% Similarity=0.106 Sum_probs=146.1
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC-cCccchh-hhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG-INELPRE-LKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~-~~~lp~~-i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
..+..+.+. +++..++.. .++ +|+.+.+.. +..++.. +.+ .+|+.+.+.+ .+..++..++.++.+|+.+++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeec
Confidence 344445444 234455443 343 577777764 5555532 333 3677777775 367777667777888888888
Q ss_pred ccccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhh-cccccccccceeeccccCCceeeeccccCCCCcce
Q 003317 591 FNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLS-FHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHT 669 (831)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 669 (831)
.++.+..+ ....+. ...|+.+.+. .++. .+.. ....+.+|+.+.+... ...+....+.+ .+|+.
T Consensus 188 ~~n~l~~I----~~~aF~----~~~L~~l~lp-~~l~---~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 188 SKTKITKL----PASTFV----YAGIEEVLLP-VTLK---EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTSCCSEE----CTTTTT----TCCCSEEECC-TTCC---EECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSE
T ss_pred CCCcceEe----chhhEe----ecccCEEEeC-Cchh---eehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccE
Confidence 77666552 111121 2445544443 1111 1110 0112345677776542 33444334555 68888
Q ss_pred eeecCCCCCceeecccccCCCCCCCccEEEEEcCCCC----CCCC--cccccCCCceEEEecccCccccccCCccccccC
Q 003317 670 LHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSKL----RDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQN 743 (831)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 743 (831)
+.+..+ ...++...+. .+++|+.+.+.++... ..++ .+..+++|+.+.|.+ .++.+... .
T Consensus 253 i~lp~~-i~~I~~~aF~----~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-------a 318 (401)
T 4fdw_A 253 VKLPNG-VTNIASRAFY----YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-------L 318 (401)
T ss_dssp EEEETT-CCEECTTTTT----TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-------T
T ss_pred EEeCCC-ccEEChhHhh----CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-------h
Confidence 888443 3334444443 4889999999875321 1233 366789999999874 36666543 6
Q ss_pred CCCCCccceecccccccccccCCC-CCCCCCccEEeecCCCCCCCCCCCCcc---ccccceEEeccc
Q 003317 744 LDPFAKLEYLVLENLMNLKSIYWS-PLPFPQLMEIRVNGCPILQKLPLDSSS---AKDRKIVIRAKQ 806 (831)
Q Consensus 744 ~~~~~~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~l~~C~~L~~lp~~~~~---~~l~~~~i~~~~ 806 (831)
+.++++|+.+.|.+ +++.+... ...+ +|+.|.+.+. .+..++.+... ..++.+.+..+.
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 67788999999954 46666543 3446 8999999874 55555544322 145667776544
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=4.4e-06 Score=89.60 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=109.9
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIG 232 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 232 (831)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++.........+ .+..+..+.......+ ++.+..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 568999999999999998775555999999999999999999987531000111 2233343333233222 22222111
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCChh-HHhh-ccCCceE
Q 003317 233 -LCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRFVE-VCGA-MKAHEYF 307 (831)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~ 307 (831)
.... ..... .....-.+++-++++|++.... ....+...+.......++|++|.... +... ......+
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 0000 00000 0000112355699999986532 22223222222233456666664332 2111 1122478
Q ss_pred EcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 308 KVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 308 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
.+.+++.++....+.+.+...... -..+..+.|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999998877543311 22567889999999998865443
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.5e-06 Score=88.89 Aligned_cols=196 Identities=9% Similarity=0.099 Sum_probs=105.5
Q ss_pred CCcccchHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCC--CCE--------------------E
Q 003317 153 EPTVGLESTLDKVWSCL-GEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDD--FDV--------------------V 209 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--F~~--------------------~ 209 (831)
..++|.+..++.+.+++ ..+..+.+.|+|+.|+||||+|+.+++.......+. ++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56799999999999888 665554599999999999999999998642000010 010 1
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCc
Q 003317 210 IWVVVSKDL-KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTAS 286 (831)
Q Consensus 210 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 286 (831)
+.+..+... ......++++..+..... ..... .+ ..+.+++-++|+|++.... ....+...+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111100 000112233332211100 00000 00 0023467799999997632 1222222221112356
Q ss_pred EEEEEcCCh-hHHh-hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 003317 287 KVVFTTRFV-EVCG-AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITIG 358 (831)
Q Consensus 287 ~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 358 (831)
.+|++|.+. .+.. .......+++.+++.++....+.+.+.......+ -.+....|++.++|.+..+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 677766543 2221 1223368899999999999999888765432111 02567889999999887654443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.24 E-value=4.1e-05 Score=78.59 Aligned_cols=192 Identities=16% Similarity=0.072 Sum_probs=104.5
Q ss_pred CCcccchHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHH
Q 003317 153 EPTVGLESTLDKVWS-------CLG---EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIER 222 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~ 222 (831)
..++|....+++++. .+. ....+.+.|+|++|+|||++|+.+++... ..| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FPF---IKICSPDK----- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CSE---EEEECGGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CCE---EEEeCHHH-----
Confidence 456788777666665 232 34567899999999999999999999753 222 22222211
Q ss_pred HHHHHHHHhCCCCCCCCCCCHH----HHHHHHHHHHcCCcEEEEEcCCCCc-----------cc-ccccccCCC---CCC
Q 003317 223 IQDDIWKKIGLCDNSWRSKSLE----DKAVDIFRVLSKKKFVLLLDDMWKR-----------VD-LTQLGVPLP---SPT 283 (831)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~----~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~l~~~l~---~~~ 283 (831)
+ ...... .....+......+..+|+|||+... .. ...+...+. ...
T Consensus 101 --------~-------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 165 (272)
T 1d2n_A 101 --------M-------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG 165 (272)
T ss_dssp --------C-------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTT
T ss_pred --------h-------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCC
Confidence 0 011111 1222223333467889999998542 01 111211111 122
Q ss_pred CCcEEEEEcCChhHHhh---ccC-CceEEcCCCCh-HHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC------ch
Q 003317 284 TASKVVFTTRFVEVCGA---MKA-HEYFKVECLAH-EKAWILFQEHVERQTLESHPDIPELAETVTKECGGL------PL 352 (831)
Q Consensus 284 ~gs~ilvTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl------Pl 352 (831)
....||.||........ .+. ...+.+++++. ++...++.+.. . -..+....|++.+.|. .-
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-----~~~~~~~~l~~~~~g~~~~g~ir~ 237 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-----FKDKERTTIAQQVKGKKVWIGIKK 237 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-----SCHHHHHHHHHHHTTSEEEECHHH
T ss_pred CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-----CCHHHHHHHHHHhcCCCccccHHH
Confidence 23456667776654332 111 35688999988 66565555421 1 1245578888898884 33
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHhcc
Q 003317 353 ALITIGRAMACKKQPEDWKYAIQVLRRS 380 (831)
Q Consensus 353 ai~~~~~~l~~~~~~~~w~~~l~~l~~~ 380 (831)
++..+-.... ......+..++..+...
T Consensus 238 l~~~l~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 238 LLMLIEMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHhh-hchHHHHHHHHHHHHHc
Confidence 3333333222 23445667666666544
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.22 E-value=2.3e-05 Score=83.33 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=100.2
Q ss_pred CCcccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
..++|++..++++..++.. ...+.|.|+|++|+|||++|+.+++... ..| +.++.+.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~----~~~---~~~~~~~~~~~~~----- 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS----ANI---KTTAAPMIEKSGD----- 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT----CCE---EEEEGGGCCSHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC----CCe---EEecchhccchhH-----
Confidence 5689999999998888753 3456789999999999999999988754 332 2233222211111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCC------------------CCCCCCcE
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPL------------------PSPTTASK 287 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~gs~ 287 (831)
....+.. ..+..+|+||++.... ....+...+ ....++..
T Consensus 97 ------------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 97 ------------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ------------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ------------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1111111 2356688888886531 111110000 00111345
Q ss_pred EEEEcCChh-HHhh-cc-CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 288 VVFTTRFVE-VCGA-MK-AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 288 ilvTtR~~~-v~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
+|.+|.... +... .. ....+.+.+++.++...++.+.+...... -..+....|++.+.|.|-.+..+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 665555432 1111 11 23578999999999999998887643311 12456788888999998655443
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=6.8e-06 Score=86.31 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=87.2
Q ss_pred CcccchHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC
Q 003317 154 PTVGLESTLDKVWSCLG---------------EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL 218 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~ 218 (831)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH--RLGYVRKGHLVSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH--HTTSSSSCCEEEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCcCCCcEEEEcHH-
Confidence 47898888888776553 23456799999999999999999988874 2222211122333211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc-----------ccccccccCCCCCCCCcE
Q 003317 219 KIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR-----------VDLTQLGVPLPSPTTASK 287 (831)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ 287 (831)
.+... ............+... +.-+|++|++... .....+...+.....+..
T Consensus 109 -----------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 -----------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp -----------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred -----------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 01000 0111111222222221 4569999999732 112223222223334567
Q ss_pred EEEEcCChh----------HHhhccCCceEEcCCCChHHHHHHHHHHhhhc
Q 003317 288 VVFTTRFVE----------VCGAMKAHEYFKVECLAHEKAWILFQEHVERQ 328 (831)
Q Consensus 288 ilvTtR~~~----------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 328 (831)
||.||.... +...+ ...+.+++++.++-..++...+...
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 777776432 22222 2678999999999999998887643
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.18 E-value=1.4e-05 Score=81.58 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=99.7
Q ss_pred CCcccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG---E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+. . ...+.|.|+|++|+|||++|+.+++... .. .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----~~---~~~~~~~~~~~~ 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----VP---FLAMAGAEFVEV 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CC---EEEEETTTTSSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CC---EEEechHHHHhh
Confidence 567999988887766542 1 2345688999999999999999999764 22 233443332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc-------------c----ccccccCCCC--
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV-------------D----LTQLGVPLPS-- 281 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~~-- 281 (831)
............+.......+.+|++||++... . ...+...+..
T Consensus 79 -----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 79 -----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred -----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 011111222223333334568999999997531 1 1111111111
Q ss_pred CCCCcEEEEEcCChhHH-hhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHH
Q 003317 282 PTTASKVVFTTRFVEVC-GAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALI 355 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~ 355 (831)
...+..||.||...... ... .....+.+...+.++-.+++...+..... ..........+++.+.|.+- .|.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHH
Confidence 12345666676554321 111 12356789999999999999888764431 12222235788888888754 444
Q ss_pred HH
Q 003317 356 TI 357 (831)
Q Consensus 356 ~~ 357 (831)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 174
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.16 E-value=5.2e-05 Score=82.39 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=108.1
Q ss_pred ceeEEEeccccccccCCC--CCCCCcccccccC-cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeec
Q 003317 516 GVRKISLMQNQIRNLPFT--PICPDLQTLFLKG-INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMF 591 (831)
Q Consensus 516 ~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~-~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 591 (831)
+++.+.+..+ +..++.. .++ +|+.+.+.. +..++ ..+.+|.+|+.+++++| .+..+|.+++. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeC
Confidence 4666666543 5555443 333 566666655 45554 34566777777777766 56777766554 4677777775
Q ss_pred cccCCCccccccccchhhhcCCcCCCceeEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceee
Q 003317 592 NCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLH 671 (831)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 671 (831)
.+ +..+ ....+.++.+|+.+.+.. ++ ..+.........|+.+.+.+ ....+....+.++++|+.+.
T Consensus 212 ~~-l~~I-------~~~aF~~~~~L~~l~l~~-~l---~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 212 VT-LKEI-------GSQAFLKTSQLKTIEIPE-NV---STIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TT-CCEE-------CTTTTTTCTTCCCEECCT-TC---CEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEE
T ss_pred Cc-hhee-------hhhHhhCCCCCCEEecCC-Cc---cCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEE
Confidence 43 3221 122334444455444431 11 01110000113566666632 23344444566677777777
Q ss_pred ecCCCCC-----ceeecccccCCCCCCCccEEEEEcCCCCCCCC--cccccCCCceEEEecccCccccccCCccccccCC
Q 003317 672 MQFPFLD-----DLKFGCVRVGTHAFHSLHTVRIYYCSKLRDLT--WLALAPNVRNIGVSTCANMEEIISPGKISQVQNL 744 (831)
Q Consensus 672 l~~~~~~-----~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~ 744 (831)
+.++... .++...+. .+++|+.+.|.+ .+..++ .+..+++|+.+.|.. .+..+... .+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~----~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-------aF 342 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLE----GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFS-------AF 342 (401)
T ss_dssp EESSCCCCCTTCEECTTTTT----TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTT-------SS
T ss_pred eCCccccCCcccEECHHHhh----CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHH-------hC
Confidence 7665433 13223332 366777777653 344443 255667777777743 24544332 44
Q ss_pred CCCCccceeccccc
Q 003317 745 DPFAKLEYLVLENL 758 (831)
Q Consensus 745 ~~~~~L~~L~L~~~ 758 (831)
.++ +|+.|.+.+.
T Consensus 343 ~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 343 NNT-GIKEVKVEGT 355 (401)
T ss_dssp SSS-CCCEEEECCS
T ss_pred CCC-CCCEEEEcCC
Confidence 555 6777777663
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=2.6e-05 Score=82.35 Aligned_cols=175 Identities=11% Similarity=0.078 Sum_probs=100.3
Q ss_pred CCcccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
+.++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++... ...+.++.+.. ... ..++.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-------~~~~~i~~~~~-~~~-~i~~~~~~~ 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-------ADMMFVNGSDC-KID-FVRGPLTNF 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-------EEEEEEETTTC-CHH-HHHTHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-------CCEEEEccccc-CHH-HHHHHHHHH
Confidence 568999999999999997654 46777888899999999999998753 12344443332 222 222222111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc---cccccccCCCCCCCCcEEEEEcCChh-HHhh-ccCCce
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV---DLTQLGVPLPSPTTASKVVFTTRFVE-VCGA-MKAHEY 306 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~ 306 (831)
.... ...+++-++|+||+.... ....+...+.....+.++|+||.... +... ......
T Consensus 97 ~~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 97 ASAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred Hhhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 0000 012367899999997643 22222222211123567777776543 1110 111247
Q ss_pred EEcCCCChHHHHHHHH-------HHhhhcccCCCCChHHHHHHHHHHhCCCchHHH
Q 003317 307 FKVECLAHEKAWILFQ-------EHVERQTLESHPDIPELAETVTKECGGLPLALI 355 (831)
Q Consensus 307 ~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 355 (831)
+.+.+++.++-.+++. +.+.......++ .+....|++.++|.+..+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 8999999888544332 222222211111 2667889999988776443
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.06 E-value=9.1e-05 Score=79.16 Aligned_cols=179 Identities=15% Similarity=0.066 Sum_probs=102.8
Q ss_pred CCcccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG------------EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++... .. .+.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~---~~~i~~~~l~~~ 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----AT---FFSISASSLTSK 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----CE---EEEEEGGGGCCS
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----Ce---EEEEehHHhhcc
Confidence 467999999999888763 23467899999999999999999998753 22 234444322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCCcc-------------cccccccCCC----CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR-VLSKKKFVLLLDDMWKRV-------------DLTQLGVPLP----SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~----~~ 282 (831)
...........+.. .-..++.+|+||++.... ....+...+. ..
T Consensus 157 ------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 157 ------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp ------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 00011222222222 223577899999984320 0111111111 11
Q ss_pred CCCcEEEEEcCChh-HHhhc--cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC-CchHHHHHH
Q 003317 283 TTASKVVFTTRFVE-VCGAM--KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG-LPLALITIG 358 (831)
Q Consensus 283 ~~gs~ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~ 358 (831)
..+..||.||.... +.... .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23445555665432 21111 123467889999999999998877543211 124567889999998 455565554
Q ss_pred H
Q 003317 359 R 359 (831)
Q Consensus 359 ~ 359 (831)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.05 E-value=0.00023 Score=74.70 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=102.3
Q ss_pred CCcccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG------------EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++++|.+..++.+.+.+. ....+.|.++|++|+|||++|+.+++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~---~~~i~~~~l~~- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---NST---FFSISSSDLVS- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---SCE---EEEEECCSSCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---CCc---EEEEEhHHHHh-
Confidence 467899988888877652 12347899999999999999999999862 121 23333332210
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc-------------ccccccC---CCCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD-------------LTQLGVP---LPSPTT 284 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 284 (831)
.............+...-..++.+|++|++..... ...+... +.....
T Consensus 85 ----------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ----------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ----------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ----------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00112222222222223346788999999975310 0011111 111123
Q ss_pred CcEEEEEcCChh-----HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc-hHHHHHH
Q 003317 285 ASKVVFTTRFVE-----VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP-LALITIG 358 (831)
Q Consensus 285 gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~ 358 (831)
+..||.||.... +.+ .....+.+...+.++-.+++...+...... -.......|++.+.|.. -.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555665332 222 223567889999999999998877543211 12345678899998874 4455544
Q ss_pred H
Q 003317 359 R 359 (831)
Q Consensus 359 ~ 359 (831)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.05 E-value=2.3e-05 Score=84.47 Aligned_cols=192 Identities=12% Similarity=0.065 Sum_probs=102.7
Q ss_pred CCcccchHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe----CCCCCHHHH
Q 003317 153 EPTVGLESTLDK---VWSCLGEEN--VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV----SKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~----s~~~~~~~~ 223 (831)
+.++|++..++. +.+.+..+. .+.+.|+|++|+|||++|+.+++... ....| +.+.. +......+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~---~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTPF---TAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCCE---EEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCCc---ccccchhhhhcccchhHH
Confidence 578999988766 445554443 35899999999999999999999874 11122 22221 222333444
Q ss_pred HHHHHHHhCC---------------------CCC-------CCCCCCHHHHHHHHHHHH-----cCC----cEEEEEcCC
Q 003317 224 QDDIWKKIGL---------------------CDN-------SWRSKSLEDKAVDIFRVL-----SKK----KFVLLLDDM 266 (831)
Q Consensus 224 ~~~i~~~l~~---------------------~~~-------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv 266 (831)
+.+....... ... .............+.... .++ +.+|++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 4444333110 000 000001122222222211 233 459999999
Q ss_pred CCcc--cccccccCCCCCCCCcEEEEEcC-C----------------hhHHhhccCCceEEcCCCChHHHHHHHHHHhhh
Q 003317 267 WKRV--DLTQLGVPLPSPTTASKVVFTTR-F----------------VEVCGAMKAHEYFKVECLAHEKAWILFQEHVER 327 (831)
Q Consensus 267 ~~~~--~~~~l~~~l~~~~~gs~ilvTtR-~----------------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 327 (831)
.... ....+...+...... .++++|. . +.+..+ ...+.+.+++.++..+++.+.+..
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHH
Confidence 7532 222222222222222 3443332 1 122222 245799999999999999988765
Q ss_pred cccCCCCChHHHHHHHHHHhC-CCchHHHH
Q 003317 328 QTLESHPDIPELAETVTKECG-GLPLALIT 356 (831)
Q Consensus 328 ~~~~~~~~~~~~~~~I~~~c~-GlPlai~~ 356 (831)
... .--.+....|++.+. |.|..+..
T Consensus 275 ~~~---~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 EDV---EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TTC---CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCC---CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 331 122456788888887 77765543
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=4.8e-05 Score=80.34 Aligned_cols=174 Identities=15% Similarity=0.178 Sum_probs=99.0
Q ss_pred CCcc-cch--HHHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTV-GLE--STLDKVWSCLGEE--NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~v-Gr~--~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
+.++ |.. .....+...+... ....+.|+|++|+||||||+.+++... . ..+ .+++++ ..++...+
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~--~-~~~-~~~~i~------~~~~~~~~ 80 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK--K-RGY-RVIYSS------ADDFAQAM 80 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH--H-TTC-CEEEEE------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH--H-CCC-EEEEEE------HHHHHHHH
Confidence 4454 532 2334444444433 356899999999999999999999874 1 122 234553 33344444
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----ccccccCCCC-CCCCcEEEEEcCCh-------
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----LTQLGVPLPS-PTTASKVVFTTRFV------- 295 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~ilvTtR~~------- 295 (831)
...+.. .... .+...+. +.-+|++||+..... ...+...+.. ...|..||+||.+.
T Consensus 81 ~~~~~~-------~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 81 VEHLKK-------GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHH-------TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHc-------CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 444321 1111 1222222 467999999965321 1222211110 12356788777532
Q ss_pred --hHHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 296 --EVCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 296 --~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
.+...+.....+.+.+ +.++...++...+...... --.+....|++.+ |..-.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhC-CCHHH
Confidence 2233334446789999 9999999999887643321 2245677888888 76643
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.5e-06 Score=81.30 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=17.0
Q ss_pred ccceecccccccccccCC-CCCCCCCccEEeecCCCCCCC
Q 003317 749 KLEYLVLENLMNLKSIYW-SPLPFPQLMEIRVNGCPILQK 787 (831)
Q Consensus 749 ~L~~L~L~~~~~l~~i~~-~~~~~p~L~~L~l~~C~~L~~ 787 (831)
+|++|+|++|+++++-.. ....+|+|++|++++|++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 444444444444433111 112345555555555555543
No 181
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=5.6e-06 Score=88.53 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=36.4
Q ss_pred cccccceeEEEecc-ccccccCCC--CCCCCcccccccC--cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCcc
Q 003317 511 IERWKGVRKISLMQ-NQIRNLPFT--PICPDLQTLFLKG--INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSM 584 (831)
Q Consensus 511 ~~~~~~lr~L~l~~-~~i~~lp~~--~~~~~Lr~L~L~~--~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~ 584 (831)
+..+.+|++|+|++ |.+..++.. ..+++|+.|+|++ +..+| ..+++|++|++|+|++| .+..+|.+.+..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-
Confidence 33444455555553 444444431 3444444444444 33332 23344444444444444 34444443222222
Q ss_pred CcEeeeccccC
Q 003317 585 LLVLRMFNCKS 595 (831)
Q Consensus 585 L~~L~l~~~~~ 595 (831)
|++|++.+|.+
T Consensus 105 L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 LQELVLSGNPL 115 (347)
T ss_dssp CCEEECCSSCC
T ss_pred ceEEEeeCCCc
Confidence 44444444433
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.03 E-value=3.8e-05 Score=80.91 Aligned_cols=176 Identities=16% Similarity=0.110 Sum_probs=103.2
Q ss_pred CCcccchHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG----------E--ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+. . ...+.|.++|++|+|||++|+.+++... ..| +.++.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~---~~v~~------ 84 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STF---FSVSS------ 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT----CEE---EEEEH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC----CCE---EEEch------
Confidence 567999999999988772 1 1356799999999999999999998864 222 22222
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCCccc-------------cccccc---CCCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR-VLSKKKFVLLLDDMWKRVD-------------LTQLGV---PLPSPT 283 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~---~l~~~~ 283 (831)
.++ .... ....+.....+.. .-..++.+|+||++..... ...+.. .+....
T Consensus 85 ~~l----~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 85 SDL----VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp HHH----HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred HHH----hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 111 1100 0112222333332 2345778999999974311 111111 111223
Q ss_pred CCcEEEEEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC-chHHHHH
Q 003317 284 TASKVVFTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL-PLALITI 357 (831)
Q Consensus 284 ~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~ 357 (831)
.+..||.||..... .+ .....+.+...+.++-.++|...+..... .--......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566667764322 22 22356788899999999999988764321 11234567888888884 4445444
Q ss_pred H
Q 003317 358 G 358 (831)
Q Consensus 358 ~ 358 (831)
.
T Consensus 228 ~ 228 (322)
T 3eie_A 228 V 228 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.02 E-value=0.00028 Score=73.29 Aligned_cols=176 Identities=14% Similarity=0.083 Sum_probs=101.8
Q ss_pred CCcccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGE------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++... .. .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~----~~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----AT---FLNISAASLTS- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT----CE---EEEEESTTTSS-
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC----CC---eEEeeHHHHhh-
Confidence 5679999999998887632 2457899999999999999999998753 22 23333332210
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHHcCCcEEEEEcCCCCccc-------------cccc---ccCCCCC-
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF-RVLSKKKFVLLLDDMWKRVD-------------LTQL---GVPLPSP- 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~-------------~~~l---~~~l~~~- 282 (831)
. ...........+. .....++.+|++|++..... ...+ ...++..
T Consensus 93 -------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 -------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp -------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred -------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 0 0111222222222 23345778999999964311 0001 0111111
Q ss_pred -CCCcEEEEEcCChh-----HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHH
Q 003317 283 -TTASKVVFTTRFVE-----VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALI 355 (831)
Q Consensus 283 -~~gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~ 355 (831)
+.+..||.||.... +.+. ....+.+...+.++...++...+..... +-.......|++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHH
Confidence 13355666666532 2222 2356777888888888888877654321 1123556789999999875 554
Q ss_pred HHH
Q 003317 356 TIG 358 (831)
Q Consensus 356 ~~~ 358 (831)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=0.00017 Score=78.19 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=99.8
Q ss_pred CCcccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGE------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+.. ...+.|.|+|++|+|||++|+.+++... .. .+.++.+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----~~---~~~v~~~~l~~- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----AT---FFNISAASLTS- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----CE---EEEECSCCC---
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----Cc---EEEeeHHHhhc-
Confidence 5679999999999887721 2357899999999999999999988753 22 23333322211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--------c-----ccccccCC---CC-CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--------D-----LTQLGVPL---PS-PT 283 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~-~~ 283 (831)
.. ...........+...-...+.+|+||++.... . ...+...+ .. ..
T Consensus 187 -~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 -KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred -cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 01111222222222224466899999996430 0 01111111 11 11
Q ss_pred CCcEEEEEcCChh-HHhh-c-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 003317 284 TASKVVFTTRFVE-VCGA-M-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL-ALITIG 358 (831)
Q Consensus 284 ~gs~ilvTtR~~~-v~~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 358 (831)
....||.||.... +... . .....+.+...+.++-.+++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2344555665432 2111 1 12246788999999999999887754321 1224567789999988654 554443
No 185
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.01 E-value=6.8e-06 Score=87.88 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=79.5
Q ss_pred EEEeccc-cccccCCCCCCCCcccccccC---cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccc
Q 003317 519 KISLMQN-QIRNLPFTPICPDLQTLFLKG---INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNC 593 (831)
Q Consensus 519 ~L~l~~~-~i~~lp~~~~~~~Lr~L~L~~---~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 593 (831)
.++.+++ .+..+|....+++|+.|+|++ +..+| ..+++|.+|++|+|++| .+..+|+..+.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 899999877889999999984 77777 57899999999999999 789888877899999999999999
Q ss_pred cCCCccccccccchhhhcCCcCCCceeEeecch
Q 003317 594 KSSSMANVVREVLIDELVQLDHLNELSMSLHSI 626 (831)
Q Consensus 594 ~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~ 626 (831)
.+..+ + ...+..+. |+.|++..+.+
T Consensus 91 ~l~~~-----~--~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESL-----S--WKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCC-----C--STTTCSCC-CCEEECCSSCC
T ss_pred cccee-----C--HHHcccCC-ceEEEeeCCCc
Confidence 98873 2 12233344 88888876554
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=5.3e-05 Score=80.88 Aligned_cols=177 Identities=16% Similarity=0.083 Sum_probs=101.0
Q ss_pred CCcccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGE------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+.. ...+-|.|+|++|+|||++|+.+++... ..| +.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~---~~v~~------ 117 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STF---FSVSS------ 117 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT----CEE---EEEEH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCE---EEeeH------
Confidence 5679999999998887621 1345688999999999999999999864 222 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc-------------ccccccCC---CCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD-------------LTQLGVPL---PSPTT 284 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~ 284 (831)
.++ .... ...........+...-..++.+|+||++..... ...+...+ .....
T Consensus 118 ~~l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 118 SDL----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHH----hhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 1110 111222222222223345789999999974311 11111111 11123
Q ss_pred CcEEEEEcCChh-----HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 003317 285 ASKVVFTTRFVE-----VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL-PLALITIG 358 (831)
Q Consensus 285 gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~ 358 (831)
+..||.||.... +.+ .....+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455665665432 222 2335678899999999999988775432111 134567889999884 44454443
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.99 E-value=8.9e-05 Score=78.48 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhccC------------------CCCCEEEEEEeC---C
Q 003317 159 ESTLDKVWSCLGEEN-VGIIGLYGMGGVGKTTLLTQINNKFLDSRK------------------DDFDVVIWVVVS---K 216 (831)
Q Consensus 159 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~~F~~~~wv~~s---~ 216 (831)
++..+.+.+.+..+. .+.+.++|+.|+||||+|+.+.+....... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777776665 467999999999999999999988641110 1122 2222221 1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCCCCCCcEEEEEcCC
Q 003317 217 DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPSPTTASKVVFTTRF 294 (831)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTtR~ 294 (831)
...+.+ .+++.+.+.... ..+++-++|+|+++... ....+...+-....++.+|++|.+
T Consensus 87 ~~~i~~-ir~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCCHHH-HHHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 111111 122222221100 12567799999997542 223333333222345666666655
Q ss_pred hh-HHh-hccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 295 VE-VCG-AMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 295 ~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.+ +.. .......+++.+++.++..+.+.+... -..+.+..+++.++|.|..+..
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 43 322 223346899999999999998887651 1134567899999999976644
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=6.2e-05 Score=80.03 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=101.9
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD-VVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
..++|.+..++.+...+..+..+.+.++|+.|+||||+|+.+++... ...+. .+.-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~~~~~~~~~~~~~~~----------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYSNMVLELNASDDRGI----------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHHHHEEEECTTSCCSH-----------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCccceEEEEcCcccccH-----------
Confidence 45689998899998888877665699999999999999999999864 11111 1222222222122
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH------cCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCChh-HHh-hc
Q 003317 232 GLCDNSWRSKSLEDKAVDIFRVL------SKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFVE-VCG-AM 301 (831)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~ 301 (831)
+.....+.... .+.+-++|+|++... .....+...+......+++|++|.... +.. ..
T Consensus 91 ------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 91 ------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp ------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 11111122111 134678999998643 222222222211123456666665332 211 11
Q ss_pred cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHH
Q 003317 302 KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLAL 354 (831)
Q Consensus 302 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 354 (831)
.....+.+.+++.++..+.+.+.+...... -..+..+.|++.++|.+--+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLK---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCC---BCHHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 223578999999999988888776433211 12456788899999987643
No 189
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=1.7e-06 Score=93.09 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred cceeEEEeccccccccCC-----C--CCCCCcccccccCcCc----cchhhhcCCcccEEeccCCCCCCCCChhhh----
Q 003317 515 KGVRKISLMQNQIRNLPF-----T--PICPDLQTLFLKGINE----LPRELKALVNLKYLNLDHTTFLHPIPSPLI---- 579 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~-----~--~~~~~Lr~L~L~~~~~----lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i---- 579 (831)
.++++|++++|.+..... . ..+++|+.|+|++..- +......+++|++|+|++| .+...+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 568888999888764321 1 2346777777776211 1122234567788888887 4554332222
Q ss_pred -cCCccCcEeeeccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 580 -SSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 580 -~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
...++|++|++++|.+...+ .......+..+++|+.|+++.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAG---VAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHH---HHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHH---HHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 24567888888877664310 0112234456666777777666554
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=2.8e-05 Score=74.56 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=42.5
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999877777889999999999999999998864
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=0.0003 Score=77.38 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=100.9
Q ss_pred CCcccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG------------EENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+.++|.+..++.+.+.+. ....+.|.++|++|+|||++|+.+++... .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~~-----~~~~v~~~~-- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---NS-----TFFSISSSD-- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---SS-----EEEEECCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---CC-----CEEEEeHHH--
Confidence 567999999998887762 12457899999999999999999999852 11 223333221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc-------------ccccccCCCC---CCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD-------------LTQLGVPLPS---PTT 284 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~ 284 (831)
+... ..+. ......... ...-..++.+|+||++..... ...+...+.. ...
T Consensus 204 --l~~~---~~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 --LVSK---WLGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred --HHhh---hcch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1100 0110 111222222 222245788999999975310 1112122211 234
Q ss_pred CcEEEEEcCChhHH-hh-c-cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 003317 285 ASKVVFTTRFVEVC-GA-M-KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL-PLALITIG 358 (831)
Q Consensus 285 gs~ilvTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~ 358 (831)
+..||.||...... .. . .....+.+...+.++-..+|...+....... .......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666666543221 11 1 1234678888888998999988775432111 134567889999985 44454443
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.81 E-value=0.00031 Score=73.05 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=99.0
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
..++|.+..++++.+.+.. ...+.|.|+|++|+|||++|+.+++... ..| +.+ +
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~-----i~v----~ 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANF-----ISI----K 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEE-----EEE----C
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC----CCE-----EEE----E
Confidence 4578999988888776632 3457899999999999999999998753 222 222 2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----------------ccccccCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----------------LTQLGVPLP--S 281 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~ 281 (831)
..++.... .+. . .......+.......+.+|++|++..... ...+...+. .
T Consensus 82 ~~~l~~~~---~g~-----~---~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 GPELLTMW---FGE-----S---EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHHH---HTT-----C---TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred hHHHHhhh---cCc-----h---HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 23333222 121 1 11122233333346789999999964210 111111111 1
Q ss_pred CCCCcEEEEEcCChhHH-hh-c---cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchH
Q 003317 282 PTTASKVVFTTRFVEVC-GA-M---KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLA 353 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 353 (831)
...+..||.||...... .. . .....+.+...+.++-.+++...+.........++ ..+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 12345666677654321 11 1 12357889999999999999887754332222233 3555667777644
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=9.2e-06 Score=86.69 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=81.5
Q ss_pred ccchhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhc--CCcCCCceeEeecch
Q 003317 549 ELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELV--QLDHLNELSMSLHSI 626 (831)
Q Consensus 549 ~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~~L~~L~i~~~~~ 626 (831)
.++..+..+++|+.|+|++|..+ .+|. + .+++|++|++..|.+.. ..+..+. .+++|+.|+++....
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~-------~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPD-------SVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCH-------HHHHHHHHSBCTTCCEEEEECBCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCCh-------HHHHHHHHccCCCCcEEEEecccc
Confidence 35566677888888888887333 4554 4 37888888888776543 2333443 577777777653210
Q ss_pred hHHHHHhhcccccccccceeeccccCCcee-eeccccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcCCC
Q 003317 627 RALERFLSFHKLKSCTGSLYLNVWEHSNWL-DVLSLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYCSK 705 (831)
Q Consensus 627 ~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 705 (831)
.. . +......+ +......+++|+.|.+.+|.........+. ..+.+++|+.|+|+.| .
T Consensus 232 ~~-~------------------~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n-~ 290 (362)
T 2ra8_A 232 DY-G------------------FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAG-V 290 (362)
T ss_dssp GG-T------------------CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSS-C
T ss_pred cc-c------------------cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCC-C
Confidence 00 0 00000000 000112467888888887765431111111 1124778888888665 4
Q ss_pred CCC-----C-CcccccCCCceEEEeccc
Q 003317 706 LRD-----L-TWLALAPNVRNIGVSTCA 727 (831)
Q Consensus 706 l~~-----l-~~l~~l~~L~~L~L~~c~ 727 (831)
++. + ..+..+++|+.|+|++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 443 1 123567888888888764
No 194
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=2.4e-06 Score=92.07 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCcccEEeccCCCCCCCCChhhhcC-----CccCcEeeeccccCCCccccccccchhhh-cCCcCCCceeEeecchhH--
Q 003317 557 LVNLKYLNLDHTTFLHPIPSPLISS-----FSMLLVLRMFNCKSSSMANVVREVLIDEL-VQLDHLNELSMSLHSIRA-- 628 (831)
Q Consensus 557 L~~Lr~L~L~~~~~l~~lp~~~i~~-----L~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~~L~~L~i~~~~~~~-- 628 (831)
+++|++|+|++| .+...+...+.. .++|++|++++|.+.. ..+..+ ..+++|+.|+++.+.+..
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 345666666666 344322221221 2466666666665433 111111 223345555555554432
Q ss_pred HHHHhhcc-cccccccceeeccccCCceeeec----cccCCCCcceeeecCCCCCceeecccccCCCCCCCccEEEEEcC
Q 003317 629 LERFLSFH-KLKSCTGSLYLNVWEHSNWLDVL----SLGELKNLHTLHMQFPFLDDLKFGCVRVGTHAFHSLHTVRIYYC 703 (831)
Q Consensus 629 l~~l~~~~-~l~~~L~~L~l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 703 (831)
...+.... .....|+.|++++|. ....... .+..+++|++|++++|.........+.......++|+.|+|++|
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 12222111 112356777776664 2211111 23456778888888776543221111111123567888888777
Q ss_pred CCCCCCC------cccccCCCceEEEeccc
Q 003317 704 SKLRDLT------WLALAPNVRNIGVSTCA 727 (831)
Q Consensus 704 ~~l~~l~------~l~~l~~L~~L~L~~c~ 727 (831)
.++... .+...++|+.|+|++|.
T Consensus 222 -~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 -GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred -CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 333321 13345778888888754
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.8e-05 Score=74.10 Aligned_cols=36 Identities=8% Similarity=0.286 Sum_probs=21.8
Q ss_pred CcccEEeccCCCCCCCCChhhhcCCccCcEeeecccc
Q 003317 558 VNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCK 594 (831)
Q Consensus 558 ~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 594 (831)
.+|++||+++|. ++...-..+.++++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCC
Confidence 357777777773 554333335666677777776664
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.76 E-value=0.00016 Score=80.12 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCCC-C-EEEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDDF-D-VVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
++++||+.+++.++..|......-+.++|++|+|||++|+.+++..... +.... + ..+.++.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------------
Confidence 5689999999999999977666677899999999999999999986300 11111 1 122222220
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHH-------hhcc
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVC-------GAMK 302 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-------~~~~ 302 (831)
.. .+. ....... .+...-..++.+|++| ...+....+...+. ....++|.+|...... ....
T Consensus 247 ~~---~g~-~e~~~~~---~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KY---RGE-FEDRLKK---VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp ----------CTTHHH---HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cc---cch-HHHHHHH---HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 000 0111222 2222223567899999 22222222333332 1234566555544311 1111
Q ss_pred CCceEEcCCCChHHHHHHHHHHhh
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
....+.++..+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 224689999999999999987654
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=1.6e-05 Score=84.76 Aligned_cols=170 Identities=12% Similarity=0.165 Sum_probs=90.0
Q ss_pred ccchhhhcCCcccEEeccCCCC---------CCCCChhhhcCCccCcEeeeccccCCCccccccccchhhhcCCcCCCce
Q 003317 549 ELPRELKALVNLKYLNLDHTTF---------LHPIPSPLISSFSMLLVLRMFNCKSSSMANVVREVLIDELVQLDHLNEL 619 (831)
Q Consensus 549 ~lp~~i~~L~~Lr~L~L~~~~~---------l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 619 (831)
.++.++..+++|+.|.+.+... ...++. ++..+++|+.|++++|.... .+ .+ .+++|+.|
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~-----l~----~~-~~~~L~~L 198 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS-----IG----KK-PRPNLKSL 198 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB-----CC----SC-BCTTCSEE
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce-----ec----cc-cCCCCcEE
Confidence 3445566777888887765421 112443 46788899999998763222 11 12 25666666
Q ss_pred eEeecchhHHHHHhhcccccccccceeeccccCCceeeeccccCCCCcceeeecCCCCC---ceeeccccc--CCCCCCC
Q 003317 620 SMSLHSIRALERFLSFHKLKSCTGSLYLNVWEHSNWLDVLSLGELKNLHTLHMQFPFLD---DLKFGCVRV--GTHAFHS 694 (831)
Q Consensus 620 ~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~--~~~~l~~ 694 (831)
.+..+.+.. ..+..+ ....+++|++|+|+.+... ......+.. ....+++
T Consensus 199 ~L~~~~l~~-~~l~~l------------------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~ 253 (362)
T 2ra8_A 199 EIISGGLPD-SVVEDI------------------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253 (362)
T ss_dssp EEECSBCCH-HHHHHH------------------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT
T ss_pred EEecCCCCh-HHHHHH------------------------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC
Confidence 665433221 111100 1124566777766432100 000100000 1124899
Q ss_pred ccEEEEEcCCCCCCCC-cc---cccCCCceEEEecccCccccccCCccccccCCCCCCccceeccccc
Q 003317 695 LHTVRIYYCSKLRDLT-WL---ALAPNVRNIGVSTCANMEEIISPGKISQVQNLDPFAKLEYLVLENL 758 (831)
Q Consensus 695 L~~L~L~~c~~l~~l~-~l---~~l~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 758 (831)
|+.|.|++|....... .+ ..+|+|+.|+|+.| .+.+...... ...+..+++|+.|+|++|
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L---~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLL---LDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHH---HTTHHHHTTCSEEECCSB
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHH---HhhcccCCcceEEECCCC
Confidence 9999999984321111 11 35899999999874 4554210000 003457899999999987
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00031 Score=74.64 Aligned_cols=171 Identities=14% Similarity=0.175 Sum_probs=98.9
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++... ..| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~----~~f---~~v~~s~l~s 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD----CKF---IRVSGAELVQ 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT----CEE---EEEEGGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC----CCc---eEEEhHHhhc
Confidence 3457888888888766521 2457889999999999999999999875 333 3333332210
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHHcCCcEEEEEcCCCCcc----------c------ccccccCCC--
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF-RVLSKKKFVLLLDDMWKRV----------D------LTQLGVPLP-- 280 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~-- 280 (831)
.+.... +.....+. ..-...+++|++|+++... + ...+...+.
T Consensus 221 -----------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 -----------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -----------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -----------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 001111 22222222 2234678999999987421 0 011111111
Q ss_pred CCCCCcEEEEEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch
Q 003317 281 SPTTASKVVFTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL 352 (831)
Q Consensus 281 ~~~~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 352 (831)
....+..||.||...+. .+...-...+.++.-+.++-.++|+.+........+.+ ...|++.+.|.--
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 12334455666654332 22223456888999999999999988776544333333 3567778887653
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=0.00012 Score=87.77 Aligned_cols=156 Identities=15% Similarity=0.245 Sum_probs=85.9
Q ss_pred CCCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhh-ccCCCC--CEEEEEEeCCCCCHHHHHHHHH
Q 003317 152 IEPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLD-SRKDDF--DVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~~F--~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
.++++||+.++.++++.|.......+.++|++|+||||+|+.+++.... .+.... ..++.++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 3568999999999999997766677899999999999999999998631 011111 1334443322110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEEcCCCCccc-------cc---ccccCCCCCCCCcEEEEEcCChh
Q 003317 229 KKIGLCDNSWRSKSLEDKAVDIFRVLS--KKKFVLLLDDMWKRVD-------LT---QLGVPLPSPTTASKVVFTTRFVE 296 (831)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~---~l~~~l~~~~~gs~ilvTtR~~~ 296 (831)
+.. ...........+...+. +++.+|++|++..... ++ .+...+ . ..+..+|.+|....
T Consensus 240 ---g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 ---GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHH
T ss_pred ---cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchH
Confidence 000 11123333333333332 3688999999965320 11 111111 1 12334555554333
Q ss_pred HH-----hh-ccCCceEEcCCCChHHHHHHHHHHh
Q 003317 297 VC-----GA-MKAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 297 v~-----~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
.. .. ......+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 21 11 1122458999999999999987554
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.00025 Score=73.55 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 003317 157 GLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCD 235 (831)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 235 (831)
|-++.++.+.+.+..+..+.+.++|+.|+||||+|+.+.+....-...+.+. .++..+. ...+.+ .+++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 4456677788888776788999999999999999999987632001123333 4444332 223222 233444443211
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCCh-hHHhhccCCceEEcCCC
Q 003317 236 NSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFV-EVCGAMKAHEYFKVECL 312 (831)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l~~L 312 (831)
..+++-++|+|++... .....+...+-.....+.+|++|.+. .+....... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 0245678999999753 23333433332223456666655443 444434444 8999999
Q ss_pred ChHHHHHHHHHHh
Q 003317 313 AHEKAWILFQEHV 325 (831)
Q Consensus 313 ~~~e~~~Lf~~~~ 325 (831)
++++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988776
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=2.6e-05 Score=74.52 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003317 158 LESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLC 234 (831)
Q Consensus 158 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 234 (831)
.+..++.+.+++.+ .....+.|+|++|+||||||+.+++... ....+. ++++ +..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~~g~~-~~~~------~~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY--EKKGIR-GYFF------DTKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH--HHSCCC-CCEE------EHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH--HHcCCe-EEEE------EHHHHHHHHHHHhcCc
Confidence 34444555555433 2457899999999999999999999874 112222 2233 3455555555444321
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCC--ccccc--ccccCCCC-CCCCcEEEEEcCC
Q 003317 235 DNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWK--RVDLT--QLGVPLPS-PTTASKVVFTTRF 294 (831)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~ilvTtR~ 294 (831)
. . . ... +.+. +.-+|||||++. ...|. .+...+.. ...|..+|+||..
T Consensus 90 ~----~-~--~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 K----D-T--KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp C----C-S--HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred h----H-H--HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 1 1 111 2222 556899999973 23332 11111111 1246778888874
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00059 Score=73.50 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=97.3
Q ss_pred CcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 154 PTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++... ..| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~----~~f---i~vs~s~L~s- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD----ATF---IRVIGSELVQ- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT----CEE---EEEEGGGGCC-
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC----CCe---EEEEhHHhhc-
Confidence 45788888888876542 1 3578899999999999999999999875 332 3333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----------------ccccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----------------LTQLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 282 (831)
.+...........+...-...+++|++|++..... ...+...+. ..
T Consensus 282 ----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ----------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ----------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ----------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00111112222222233346789999999864210 001111111 12
Q ss_pred CCCcEEEEEcCChhH-----HhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 283 TTASKVVFTTRFVEV-----CGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
..+..||.||-..+. .+...-...+.+...+.++-.++|+.++.........++ ..|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 234445556653332 221123567888888999999999887765432333333 56777888764
No 203
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=0.0014 Score=69.25 Aligned_cols=170 Identities=19% Similarity=0.183 Sum_probs=93.1
Q ss_pred CCcccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE-----ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDI 227 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 227 (831)
+.++|.+..++.+...+.. +....+.++|++|+||||||+.+++... ..|. ....+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~----~~~~---~~sg~~~~~~~------ 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ----TNIH---VTSGPVLVKQG------ 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT----CCEE---EEETTTCCSHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEE---EEechHhcCHH------
Confidence 4578988777777666542 2457899999999999999999999864 2221 11111111111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--cccccccCCCC--------CC----------CCcE
Q 003317 228 WKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--DLTQLGVPLPS--------PT----------TASK 287 (831)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~--------~~----------~gs~ 287 (831)
+... +...+ .++-++++|++.... ..+.+...+.. .+ ....
T Consensus 92 -----------------~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 92 -----------------DMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -----------------HHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -----------------HHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1111 11111 234466778775421 11111000000 00 0112
Q ss_pred EE-EEcCChhHHhhcc--CCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 003317 288 VV-FTTRFVEVCGAMK--AHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALITI 357 (831)
Q Consensus 288 il-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 357 (831)
++ .|++...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 22 3555433321111 1235789999999999999988754321 222567899999999999765443
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.0013 Score=66.65 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=93.5
Q ss_pred CCcccchHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCL---GE---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+.++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++... ..| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----VPF---FTISGSDFVE- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT----CCE---EEECSCSSTT-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CCE---EEEeHHHHHH-
Confidence 56789988887766543 21 1245688999999999999999998764 232 3332221110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----------------ccccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----------------LTQLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 282 (831)
. ............+.......+.++++|++..... ...+...+. ..
T Consensus 84 ---------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 ---------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ---------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ---------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 0112223333333344445678999999842100 001110010 11
Q ss_pred CCCcEEEEEcCChh-HHhhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCC-CchHHH
Q 003317 283 TTASKVVFTTRFVE-VCGAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGG-LPLALI 355 (831)
Q Consensus 283 ~~gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~ 355 (831)
..+..||.||...+ +.... .....+.+...+.++-.+++...+.......... ...++..+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 23455666666443 21111 1234677888888888888877664332122222 3456677777 554443
No 205
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=5.3e-05 Score=77.59 Aligned_cols=151 Identities=16% Similarity=0.085 Sum_probs=81.4
Q ss_pred CCcccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLGE------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||++|+.+++... ..|-. +..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~---v~~~~~~~- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH----VPFFS---MGGSSFIE- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----CCCCC---CCSCTTTT-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEE---echHHHHH-
Confidence 5689998888777765531 1234578999999999999999999864 23311 11111100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc-----------------cccccccCCCC--
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV-----------------DLTQLGVPLPS-- 281 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~-- 281 (831)
..... ....... .+......++.+|++||+.... ....+...+..
T Consensus 83 ---------~~~~~----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 ---------MFVGL----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ---------SCSSS----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ---------hhcch----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00000 0111111 1222223467899999995421 11222222211
Q ss_pred -CCCCcEEEEEcCChhHH-hh-c---cCCceEEcCCCChHHHHHHHHHHhhh
Q 003317 282 -PTTASKVVFTTRFVEVC-GA-M---KAHEYFKVECLAHEKAWILFQEHVER 327 (831)
Q Consensus 282 -~~~gs~ilvTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 327 (831)
......||.||...... .. . .....+.+...+.++-.+++...+..
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 11224566676654321 11 1 12346788888889888888877643
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.57 E-value=0.00048 Score=76.33 Aligned_cols=176 Identities=17% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
..++|.+..++++.+.+.. ...+-|.|+|++|+|||++|+.+++... ..| +.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----~~f---v~vn~----- 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFF---FLING----- 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEE---EEEEH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCE---EEEEc-----
Confidence 3578999999998877631 3456789999999999999999988753 222 33332
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc-------------cccccccCCC--CCCC
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV-------------DLTQLGVPLP--SPTT 284 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~ 284 (831)
.+ +...+ ...........+.....+++.+|+||++.... ....+...+. ....
T Consensus 272 -~~----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 272 -PE----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp -HH----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred -hH----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 11 11110 11112223334444456778999999984210 0111111111 1123
Q ss_pred CcEEEEEcCChh-HHhhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC-chHHHH
Q 003317 285 ASKVVFTTRFVE-VCGAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL-PLALIT 356 (831)
Q Consensus 285 gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~ 356 (831)
+..||.||.... +...+ .....+.+...+.++-.+++...+..........+ .++++.+.|. +-.+..
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAA 413 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHH
Confidence 455666666442 21111 22346889999999999999988765432232333 4566667764 433433
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00028 Score=76.31 Aligned_cols=170 Identities=16% Similarity=0.227 Sum_probs=97.1
Q ss_pred CCcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+++++... ..| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~----~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG----ANF---IFSPASGIVD 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----CEE---EEEEGGGTCC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCE---EEEehhhhcc
Confidence 345788888888776552 1 2468899999999999999999999875 222 3333332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHHcCCcEEEEEcCCCCcc--------c--------ccccccCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF-RVLSKKKFVLLLDDMWKRV--------D--------LTQLGVPL--P 280 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~--------~--------~~~l~~~l--~ 280 (831)
.+.... +.....+. ..-...+++|++|+++... . ...+...+ .
T Consensus 254 -----------------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 -----------------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp -----------------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred -----------------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 001111 22222222 2334678999999996421 0 01111111 1
Q ss_pred CCCCCcEEEEEcCChhHHh-hc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 281 SPTTASKVVFTTRFVEVCG-AM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 281 ~~~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....+..||.||-..+... .+ .-...+.++.-+.++-.++|+.+........+.++ ..|++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 1223456777776443321 11 12346788888888888999877765432333343 56677787754
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.55 E-value=6.4e-05 Score=68.84 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 154 PTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999888887742 334457899999999999999998875
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.53 E-value=0.00077 Score=79.79 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCCC-CE-EEEEEeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDDF-DV-VIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~~-~~wv~~s~~~~~~~~~~~i~~ 229 (831)
++++||+.+++++...|......-+.++|++|+|||++|+.+++..... +.... .+ .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 5689999999999999977666678999999999999999999886300 11111 11 111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhHHh-------hcc
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEVCG-------AMK 302 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-------~~~ 302 (831)
+... ...........+......++.+|++| ........+...+. ....++|.||....... ...
T Consensus 245 --g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 --GTKY---RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred --cccc---cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 0000 00011112222233334678899999 22222222222222 22355666665443100 011
Q ss_pred CCceEEcCCCChHHHHHHHHHHhh
Q 003317 303 AHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 303 ~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
....+.++..+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 124689999999999999986654
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00041 Score=74.95 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+++.|.+..+++|.+.+. . ...+-|.++|++|+|||.+|+++++... ..| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~----~~f---~~v~~s~l~~ 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN----ATF---LKLAAPQLVQ 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----CEE---EEEEGGGGCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC----CCE---EEEehhhhhh
Confidence 345788988888877642 1 2467899999999999999999999875 222 3333322110
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCCc-------c-----c----ccccccCCC--
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR-VLSKKKFVLLLDDMWKR-------V-----D----LTQLGVPLP-- 280 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~-----~----~~~l~~~l~-- 280 (831)
. +.. ..+.....+.. .-...+++|++|+++.. . . ...+...+.
T Consensus 254 --------------~---~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 254 --------------M---YIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp --------------S---CSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred --------------c---ccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 0 011 11222222222 22457899999998531 0 0 011111111
Q ss_pred CCCCCcEEEEEcCChhHHh-hc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 281 SPTTASKVVFTTRFVEVCG-AM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 281 ~~~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....+-.||.||...+... .+ .-...+.++.-+.++-.++|+.+........+-+ ...|++.+.|.-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1223445666776543321 11 1234678888888888899987765543233333 356677887754
No 211
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.50 E-value=0.0008 Score=73.01 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=22.2
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG 546 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~ 546 (831)
+.++.+|+.+.|.. ++..++.. .+|++|+.+++..
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC
Confidence 44556777777753 46666544 5677777777754
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00081 Score=71.71 Aligned_cols=169 Identities=19% Similarity=0.220 Sum_probs=94.8
Q ss_pred CcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 154 PTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++... ..| +.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~----~~f---i~v~~s~l~s- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS----ATF---LRIVGSELIQ- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT----CEE---EEEESGGGCC-
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC----CCE---EEEEHHHhhh-
Confidence 34688888888776552 1 2467899999999999999999999975 332 2233222110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEEcCCCCccc----------------ccccccCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR-VLSKKKFVLLLDDMWKRVD----------------LTQLGVPL--PS 281 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~ 281 (831)
.+.. ..+.....+.. .-...+++|++|+++.... ...+...+ ..
T Consensus 255 ----------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 ----------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ----------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ----------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0011 11222233322 2345789999999864210 00111111 01
Q ss_pred CCCCcEEEEEcCChhHH-hhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 282 PTTASKVVFTTRFVEVC-GAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
...+..||.||-..+.. ..+ .-...+.+..-+.++-.++|+.+........+.++ ..|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 22344556666544332 111 11345778888888888999887765443333343 56667777754
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0008 Score=72.60 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=91.6
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++... .+| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~----~~~---~~v~~~~l~~ 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK----AAF---IRVNGSEFVH 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT----CEE---EEEEGGGTCC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCe---EEEecchhhc
Confidence 3457889888888776521 2467799999999999999999999875 332 3343332211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--------cc--------ccccccCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--------VD--------LTQLGVPLP--S 281 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~--------~~~l~~~l~--~ 281 (831)
.+.......+...+...-...++++++|+++.. .. ...+...+. .
T Consensus 245 -----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 -----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp -----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred -----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 001111222222222233467899999998521 00 011111111 1
Q ss_pred CCCCcEEEEEcCChhH-----HhhccCCceEEcCCCCh-HHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 282 PTTASKVVFTTRFVEV-----CGAMKAHEYFKVECLAH-EKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
...+..||.||...+. .+...-...+.+..+.. ++-..+|..+........+.++ ..|++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 2334556666654332 22111234567766654 4555667666544332233333 56677787754
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.40 E-value=0.0011 Score=72.95 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=96.2
Q ss_pred CCcccchHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCL---GE---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.+++|.+..++++.+.+ .. ...+-|.|+|++|+|||+||+.+++... ..| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~----~~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN----VPF---FHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT----CCE---EEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCe---eeCCHHHHHHH
Confidence 45789988877766543 21 1234588999999999999999999764 333 23333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc----------------cccccccCCC--CC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV----------------DLTQLGVPLP--SP 282 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 282 (831)
+ ...........+.....+.+.+|+||++.... ....+...+. ..
T Consensus 89 ----------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 ----------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp ----------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred ----------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 01111222233444445678999999995421 0111111110 11
Q ss_pred CCCcEEEEEcCChhHHh-h-c---cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 283 TTASKVVFTTRFVEVCG-A-M---KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 283 ~~gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
..+..||.||...+... . . .-...+.++..+.++-.+++..++.........+ ...|++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 23556676776554321 1 1 1234778888888888888877765433222222 344778888876
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.39 E-value=0.0014 Score=77.56 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=91.5
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCC-CCCEEEEE-EeCCCCCHHHHHHHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKD-DFDVVIWV-VVSKDLKIERIQDDIWK 229 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~-~F~~~~wv-~~s~~~~~~~~~~~i~~ 229 (831)
++++||+.++.++++.|......-+.|+|++|+||||+|+.+++..... +.. .+.+.++. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 5679999999999999987777788999999999999999999876311 110 12333331 11110
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCcc--------c--ccccccCCCCCCCCcEEEEEcCChhHH
Q 003317 230 KIGLCDNSWRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKRV--------D--LTQLGVPLPSPTTASKVVFTTRFVEVC 298 (831)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~--~~~l~~~l~~~~~gs~ilvTtR~~~v~ 298 (831)
+.... .....++....+.+.+. .++.+|++||+.... . ...+...+.. ..+..+|.+|...+..
T Consensus 254 -~~~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 -LAGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp --CCCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHH
T ss_pred -hcccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHh
Confidence 00000 12234444444444443 457899999997531 1 1111222222 2345666666544321
Q ss_pred hhc-------cCCceEEcCCCChHHHHHHHHHHh
Q 003317 299 GAM-------KAHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 299 ~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
... .....+.+...+.++..+++...+
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 112368899999999998887655
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=0.0012 Score=68.88 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=38.4
Q ss_pred CCcccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE--------------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999988877643 2356788999999999999999998764
No 217
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.33 E-value=0.00047 Score=66.96 Aligned_cols=120 Identities=21% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCcccch----HHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHH
Q 003317 153 EPTVGLE----STLDKVWSCLGEE----NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQ 224 (831)
Q Consensus 153 ~~~vGr~----~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 224 (831)
+.+++.+ ..++.+.+++... ....+.|+|++|+||||||+.+++... .....++++++ ..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~----~~~~~~~~~~~------~~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA----KRNVSSLIVYV------PELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH----TTTCCEEEEEH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH----HcCCeEEEEEh------HHHH
Confidence 4555543 3444555555432 127899999999999999999999875 23344566644 3444
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCc--ccccc--ccc-CCCCC-CCCcEEEEEcCC
Q 003317 225 DDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKR--VDLTQ--LGV-PLPSP-TTASKVVFTTRF 294 (831)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 294 (831)
..+..... .......... +.+. -+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 95 ~~~~~~~~-------~~~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQ-------DQTMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC----------CCCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhc-------cchHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 44443322 1112222222 2222 39999999653 33322 211 11111 234568887774
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.19 E-value=0.0013 Score=68.64 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 35789999888888777432 235899999999999999999999864
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.98 E-value=0.001 Score=67.65 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=34.3
Q ss_pred CCcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4578999888887766532 2345678999999999999999998753
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.94 E-value=0.0056 Score=63.16 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456888999999999999999999874
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.93 E-value=0.0067 Score=66.95 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=36.5
Q ss_pred CCcccchHHHHHHHHH---hcCC--CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSC---LGEE--NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.++|.+..++.+..+ +..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5689999888765443 3333 346789999999999999999998864
No 222
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.91 E-value=0.0013 Score=68.43 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 153 EPTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999988888877643 344567799999999999999999865
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.84 E-value=0.00086 Score=67.63 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=41.1
Q ss_pred ccceeEEEeccccccccCCCCCCCCcccccccCcCccchhhhcCCcccEEeccCCCCCCCCChhhhcCCc--cCcEeeec
Q 003317 514 WKGVRKISLMQNQIRNLPFTPICPDLQTLFLKGINELPRELKALVNLKYLNLDHTTFLHPIPSPLISSFS--MLLVLRMF 591 (831)
Q Consensus 514 ~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~--~L~~L~l~ 591 (831)
+.+++.|+|++|.+..++ .+|..++.+++|++|+|++| .+..+.. +..+. +|++|++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~-----------------~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLD-----------------DMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLD 228 (267)
T ss_dssp CTTCCEEECTTSCCCCCG-----------------GGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECT
T ss_pred CCCCCEEECCCCCCCCCc-----------------cchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEcc
Confidence 456777777777766542 34556667777777777777 5666532 44444 77777777
Q ss_pred cccCC
Q 003317 592 NCKSS 596 (831)
Q Consensus 592 ~~~~~ 596 (831)
+|.+.
T Consensus 229 ~Npl~ 233 (267)
T 3rw6_A 229 GNSLC 233 (267)
T ss_dssp TSTTG
T ss_pred CCcCc
Confidence 77655
No 224
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.016 Score=58.99 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=80.8
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
.++.|.++.++++.+.+.. .-.+-+.++|++|+||||||+.++.... . ..+.+..+.-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~----~---~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG----L---NFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT----C---EEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC----C---CEEEEEcHHHHh
Confidence 4567888877777665421 1123499999999999999999998764 1 234444322110
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCccc---------ccc----cccCCCC--CC
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRVD---------LTQ----LGVPLPS--PT 283 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~~~----l~~~l~~--~~ 283 (831)
. ...........+.+.. ...+.++++|++..... ... +...+.. ..
T Consensus 83 ~------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 83 M------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp S------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred h------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0 0000111222233322 34678999999864210 000 1001111 11
Q ss_pred CCcEEEEEcCChhHHhh-----ccCCceEEcCCCChHHHHHHHHHHhh
Q 003317 284 TASKVVFTTRFVEVCGA-----MKAHEYFKVECLAHEKAWILFQEHVE 326 (831)
Q Consensus 284 ~gs~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~ 326 (831)
...-++.+|...++... ..-...+.++..+.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 23445556665554221 12345678888899998999987764
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.81 E-value=0.016 Score=65.16 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLESTLDKVWSCLG------EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|.+..+..+.+.+. ......+.++|++|+||||||+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788777776654432 12467899999999999999999998864
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.73 E-value=0.0016 Score=75.72 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=95.3
Q ss_pred CcccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 154 PTVGLESTLDKVWSCLG----E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
++.|.+..+++|.+.+. . ...+-|.++|++|+|||+||+++++... .+| +.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg----~~~---~~v~~~----- 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFF---FLINGP----- 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----CEE---EEEEHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CeE---EEEEhH-----
Confidence 34678887777766542 1 2467899999999999999999998864 222 333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--------c-----ccccccCCC--CCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--------D-----LTQLGVPLP--SPTTA 285 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~--~~~~g 285 (831)
++ . +.. .......+...+....+..+.+|++|+++... + ...+...+. ....+
T Consensus 273 -~l----~---sk~----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 273 -EI----M---SKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HH----H---SSC----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -Hh----h---ccc----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 11 1 100 11122223333333445678999999986421 0 001111110 11123
Q ss_pred cEEEEEcCChh-HHhhc----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCch
Q 003317 286 SKVVFTTRFVE-VCGAM----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPL 352 (831)
Q Consensus 286 s~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 352 (831)
..||.||...+ +-..+ .-...+.+...+.++-.++|..+........+.+ ...|++++.|.--
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 34555555433 21111 1245788898899998999887765443233333 3567778887653
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.71 E-value=0.002 Score=76.31 Aligned_cols=147 Identities=19% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHH
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERI 223 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 223 (831)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~----~~~~~~i~i~~s~~~~~~-- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF----GDEESMIRIDMSEYMEKH-- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH----SCTTCEEEEEGGGGCSSC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc----CCCcceEEEechhccccc--
Confidence 4578999999888877742 1233799999999999999999999863 222234555554432100
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEEcCCCCcc--cccccccC-----CCC------CCCCcEEE
Q 003317 224 QDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLS-KKKFVLLLDDMWKRV--DLTQLGVP-----LPS------PTTASKVV 289 (831)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--~~~~l~~~-----l~~------~~~gs~il 289 (831)
... ...+...++ ...-+|+||++.... ....+... +.. .....+||
T Consensus 565 ----------------~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 565 ----------------STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp ----------------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred ----------------ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 000 111112222 234489999996531 11111111 111 12346788
Q ss_pred EEcCC-----hhH----Hhhc-----c-CCceEEcCCCChHHHHHHHHHHh
Q 003317 290 FTTRF-----VEV----CGAM-----K-AHEYFKVECLAHEKAWILFQEHV 325 (831)
Q Consensus 290 vTtR~-----~~v----~~~~-----~-~~~~~~l~~L~~~e~~~Lf~~~~ 325 (831)
+||.. ..+ ...+ . -...+.+.+++.++-..++...+
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 88873 111 1111 1 12478899999988887776654
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.65 E-value=0.011 Score=65.14 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=90.6
Q ss_pred CCcccchHHHHHHHHHh---cCC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCL---GEE---------NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
.+++|.+..+.++.+.. ... -.+-|.|+|++|+||||||+.+++... .. .+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~----~~---~i~i~g~~~~~- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VP---FITASGSDFVE- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CC---EEEEEGGGGTS-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----CC---EEEEehhHHHH-
Confidence 56789988777766543 221 124589999999999999999998753 22 23343322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC----CcEEEEEcCCCCcc------------c----ccccccCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSK----KKFVLLLDDMWKRV------------D----LTQLGVPLP 280 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~------------~----~~~l~~~l~ 280 (831)
.........++..++. .+.++++|++.... . ...+...+.
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0011112233333332 35799999995321 0 111111111
Q ss_pred C--CCCCcEEEEEcCChhHHhh-c----cCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 281 S--PTTASKVVFTTRFVEVCGA-M----KAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 281 ~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
. ...+..++.||...++... . .....+.++..+.++-.+++..++.......+.. ...|++.+.|..
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1 1223455556665554221 1 1234788888898888888876654322111112 345677777765
No 229
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.64 E-value=0.009 Score=64.62 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=51.2
Q ss_pred cccccceeEEEeccccccccCCC--CCCCCcccccccC-cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCc
Q 003317 511 IERWKGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG-INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLL 586 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~-~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~ 586 (831)
+..+.+|+.+.+.++ +..++.. ..|.+|+.+.+.. +..++ ..+.++..|+.+.+..+ +..+... .....+|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~-~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNS--LYYLGDF-ALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTT-TTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCC--ceEeehh-hcccCCCc
Confidence 455677888888643 4455544 6788999988865 55554 34567888888877765 2344443 34556788
Q ss_pred Eeeecc
Q 003317 587 VLRMFN 592 (831)
Q Consensus 587 ~L~l~~ 592 (831)
.+.+..
T Consensus 234 ~i~ip~ 239 (394)
T 4fs7_A 234 NIIIPD 239 (394)
T ss_dssp EEEECT
T ss_pred eEEECC
Confidence 887754
No 230
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.61 E-value=0.019 Score=61.93 Aligned_cols=72 Identities=8% Similarity=0.169 Sum_probs=38.6
Q ss_pred eeEEEeccccccccCCC--CCCCCcccccccC-----cCccc-hhhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEe
Q 003317 517 VRKISLMQNQIRNLPFT--PICPDLQTLFLKG-----INELP-RELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVL 588 (831)
Q Consensus 517 lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~-----~~~lp-~~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L 588 (831)
|+.+.+.. .+..+... .+|.+|+.+.+.. ++.++ ..+..+.+|+.+.+..+ +..++..++..+.+|+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence 55555543 34444443 5666777666543 33333 23445556666555543 455555555666666666
Q ss_pred eec
Q 003317 589 RMF 591 (831)
Q Consensus 589 ~l~ 591 (831)
.+.
T Consensus 143 ~lp 145 (394)
T 4gt6_A 143 TIP 145 (394)
T ss_dssp ECC
T ss_pred ccc
Confidence 664
No 231
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.61 E-value=0.0014 Score=66.02 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=37.0
Q ss_pred ccccceeEEEeccccccccCCCCCCCCcccccccCcCccchhhhcCCcccEEeccCCCCCCCCCh------hhhcCCccC
Q 003317 512 ERWKGVRKISLMQNQIRNLPFTPICPDLQTLFLKGINELPRELKALVNLKYLNLDHTTFLHPIPS------PLISSFSML 585 (831)
Q Consensus 512 ~~~~~lr~L~l~~~~i~~lp~~~~~~~Lr~L~L~~~~~lp~~i~~L~~Lr~L~L~~~~~l~~lp~------~~i~~L~~L 585 (831)
..+.+|++|+|++|.+..+... ..+..+ +|++|+|++|..-..+|. .++..+++|
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l------------------~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L 253 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSEREL------------------DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKL 253 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGG------------------GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTC
T ss_pred hhCCCCCEEECCCCccCCchhh------------------hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCccc
Confidence 3567777888877776654221 112234 899999999853334552 246778888
Q ss_pred cEee
Q 003317 586 LVLR 589 (831)
Q Consensus 586 ~~L~ 589 (831)
+.||
T Consensus 254 ~~LD 257 (267)
T 3rw6_A 254 LRLD 257 (267)
T ss_dssp CEES
T ss_pred CeEC
Confidence 8887
No 232
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.58 E-value=0.00068 Score=64.79 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred cccceeEEEeccc-cccc-----cCCC-CCCCCcccccccC-------cCccchhhhcCCcccEEeccCCCCCCC-----
Q 003317 513 RWKGVRKISLMQN-QIRN-----LPFT-PICPDLQTLFLKG-------INELPRELKALVNLKYLNLDHTTFLHP----- 573 (831)
Q Consensus 513 ~~~~lr~L~l~~~-~i~~-----lp~~-~~~~~Lr~L~L~~-------~~~lp~~i~~L~~Lr~L~L~~~~~l~~----- 573 (831)
...++++|+|++| .+.. +... ...++|++|+|++ ...+...+...++|++|+|++| .+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 3467888888887 6653 1111 4456666666665 2223444555566666666666 3443
Q ss_pred CChhhhcCCccCcEeee--ccccCCCccccccccchhhhcCCcCCCceeEeecchh
Q 003317 574 IPSPLISSFSMLLVLRM--FNCKSSSMANVVREVLIDELVQLDHLNELSMSLHSIR 627 (831)
Q Consensus 574 lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~i~~~~~~ 627 (831)
+.. .+...++|++|++ ++|.+..-+ .......+...++|+.|++..+.+.
T Consensus 113 l~~-~L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVE-ALQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH-GGGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HHHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 222 2445556666666 555554310 0012233444455666666555443
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.57 E-value=0.0094 Score=60.01 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=87.1
Q ss_pred CCcccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG---E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+.++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.+++... .. .+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~----~~---~i~~~~------ 82 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VP---FITASG------ 82 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----CC---EEEEEH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CC---EEEeeH------
Confidence 456888776666554331 1 1123489999999999999999998753 22 223321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCcc------------c----ccccccCCCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKRV------------D----LTQLGVPLPSPT 283 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~ 283 (831)
.++ .... ..........+.+.. ...+.++++|++.... . ...+...+..+.
T Consensus 83 ~~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 83 SDF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp HHH----HHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred HHH----HHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 111 1100 001112222233333 2456899999984210 0 111111111111
Q ss_pred --CCcEEEEEcCChhHHhh-----ccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 284 --TASKVVFTTRFVEVCGA-----MKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 284 --~gs~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....++.||....+... ......+.++..+.++-.+++...+.........+ ...|++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 22334456665544211 12345678888898888888877654332122222 345667777654
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.0034 Score=57.34 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
....++|+|+.|+|||||++.+++... . ..+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--E-AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--T-TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--h-cCC-cEEEEcHHH
Confidence 567899999999999999999999875 2 222 255665443
No 235
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.55 E-value=0.033 Score=60.15 Aligned_cols=81 Identities=9% Similarity=0.262 Sum_probs=59.1
Q ss_pred cccccceeEEEecccc---ccccCCC--CCCCCcccccccC-cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCc
Q 003317 511 IERWKGVRKISLMQNQ---IRNLPFT--PICPDLQTLFLKG-INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFS 583 (831)
Q Consensus 511 ~~~~~~lr~L~l~~~~---i~~lp~~--~~~~~Lr~L~L~~-~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~ 583 (831)
+.++.+|+.+.+..+. +..++.. ..|.+|+.+.+.. +..++. .+..+.+|+.+.+..+ +..++...+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccccccce--eeeecccceeccc
Confidence 4567789999987653 5555544 6788898887765 666653 4577889999998764 5677777778888
Q ss_pred cCcEeeeccc
Q 003317 584 MLLVLRMFNC 593 (831)
Q Consensus 584 ~L~~L~l~~~ 593 (831)
+|+.+.+..+
T Consensus 161 ~L~~i~~~~~ 170 (394)
T 4gt6_A 161 SLHTVTLPDS 170 (394)
T ss_dssp TCCEEECCTT
T ss_pred ccccccccce
Confidence 8888888653
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.52 E-value=0.009 Score=61.08 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=87.9
Q ss_pred CCcccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCH
Q 003317 153 EPTVGLESTLDKVWSCLG---E---------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKI 220 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~ 220 (831)
+.++|.+..++++.+... . .-.+-+.|+|++|+||||||+.+++... .. .+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~----~~---~i~~~~------ 106 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VP---FITASG------ 106 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----CC---EEEEEH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----CC---EEEecH------
Confidence 467898877766654432 1 1123389999999999999999998753 22 233321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEEcCCCCc------------ccc----cccccCCCCCC
Q 003317 221 ERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL-SKKKFVLLLDDMWKR------------VDL----TQLGVPLPSPT 283 (831)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~~~----~~l~~~l~~~~ 283 (831)
.++ .... .. ........+.+.. ...+.++++|++... ..+ ..+...+..+.
T Consensus 107 ~~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 107 SDF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HHH----HHST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHH----HHHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 111 1100 00 0111222222322 346789999998421 001 11111121111
Q ss_pred --CCcEEEEEcCChhHH-----hhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCc
Q 003317 284 --TASKVVFTTRFVEVC-----GAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLP 351 (831)
Q Consensus 284 --~gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 351 (831)
....++.||...++. +.......+.+...+.++-.+++...+.......... ...+++.+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 123344455544432 1112345788899999888888887664332122222 345667777754
No 237
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.49 E-value=0.0079 Score=63.27 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++.|+|++|+||||||.+++.... . .-..++|++....++.. .+++++..... ....+.++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--K--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--H--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--h--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHH
Confidence 467999999999999999999998864 1 22357888877766654 55666654221 123456666666
Q ss_pred HHHHHc-CCcEEEEEcCCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~~ 268 (831)
+...++ .+.-++|+|.+..
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTT
T ss_pred HHHHhhhcCCCeEEehHhhh
Confidence 666554 4556899999854
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0075 Score=59.10 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------CCCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD----------NSWRSKS 242 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~~ 242 (831)
.-.++.|+|.+|+|||||+..++. .. -..++|++....++...+.. +...++... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~------~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS------GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH------CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc------CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 457999999999999999999987 22 13678888776556655443 333332210 0001112
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCC
Q 003317 243 LEDKAVDIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 243 ~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (831)
..+....++..+..+.-+||+|.+..
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 23344555555544577999998753
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.0062 Score=72.02 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=84.0
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+.++|.+..++++.+++.. .....|.|+|++|+||||||+.+++... ..| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----~~~---i~v~~~---- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFF---FLINGP---- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----CEE---EEEEHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CcE---EEEEch----
Confidence 3468988888888777632 2456899999999999999999988753 222 333321
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCccc----------------ccccccCCCCCC
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRVD----------------LTQLGVPLPSPT 283 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~~ 283 (831)
++ . +. . ...........+.......+.++++|++..... +..+...+. ..
T Consensus 273 --~l----~---~~-~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 273 --EI----M---SK-L---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp --HH----S---SS-S---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred --Hh----h---hh-h---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 11 0 00 0 111112222333344456788999999843210 111111111 12
Q ss_pred CCcEEEEEcCChh-HHhhc----cCCceEEcCCCChHHHHHHHHHHhhhc
Q 003317 284 TASKVVFTTRFVE-VCGAM----KAHEYFKVECLAHEKAWILFQEHVERQ 328 (831)
Q Consensus 284 ~gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 328 (831)
.+..+|.||.... +-..+ .....+.+...+.++-.+++...+...
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 3345555665432 21111 112456788888898888888766543
No 240
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.42 E-value=0.0015 Score=62.28 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=9.9
Q ss_pred cCCCCcceeeecCCC
Q 003317 662 GELKNLHTLHMQFPF 676 (831)
Q Consensus 662 ~~l~~L~~L~l~~~~ 676 (831)
...++|++|++++|.
T Consensus 148 ~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHCSSCCEEECCCSS
T ss_pred HhCCCcCEEeccCCC
Confidence 344677777777764
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.40 E-value=0.0019 Score=66.18 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV--SKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 250 (831)
..+++.|+|++|+||||||.+++.... . .++|++. .... .. ...+.++....+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G--~-----~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i 176 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG--G-----KDKYATVRFGEPL-------------SG-----YNTDFNVFVDDI 176 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH--T-----TSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC--C-----CEEEEEecchhhh-------------hh-----hhcCHHHHHHHH
Confidence 346788999999999999999987622 1 1334554 2221 10 113556666777
Q ss_pred HHHHcCCcEEEEEcCCCC
Q 003317 251 FRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~ 268 (831)
.+.+.+.+ +||+|++..
T Consensus 177 ~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 177 ARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHCS-EEEEECCTT
T ss_pred HHHHhhCC-EEEEecccc
Confidence 77777666 999999854
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.014 Score=58.23 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----C---CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD----DFDVVIWVVVSKDLKIERIQDDIWKKIGLCDN----S---WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~ 241 (831)
.-.++.|+|++|+|||||+..++.... ... .-..++|+.....++...+ ..+++.++.... . ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ--LPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT--SCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh--CchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecC
Confidence 457999999999999999999988642 111 2357889887776555444 344555543210 0 0112
Q ss_pred CHHH---HHHHHHHHHc-CCcEEEEEcCCCC
Q 003317 242 SLED---KAVDIFRVLS-KKKFVLLLDDMWK 268 (831)
Q Consensus 242 ~~~~---~~~~l~~~l~-~k~~LlVlDdv~~ 268 (831)
+..+ ....+.+.+. .+.-+||+|++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2222 2333555554 4677999999753
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.27 E-value=0.012 Score=62.02 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++..... ....+.++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~----~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ----AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH----HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 567999999999999999999987764 122468899888776643 35556543211 122345666655
Q ss_pred HHHHHcC-CcEEEEEcCCCC
Q 003317 250 IFRVLSK-KKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~~-k~~LlVlDdv~~ 268 (831)
+....+. +.-+||+|.+..
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEcChHh
Confidence 5555543 466999999843
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.16 E-value=0.015 Score=61.48 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
..+++.|+|.+|+||||||.+++.... . .-..++|++....++.. .++.++..... ....+.++....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--K--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--H--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 457899999999999999999888764 1 22368999988776643 24555543211 123456666666
Q ss_pred HHHHHcC-CcEEEEEcCCCC
Q 003317 250 IFRVLSK-KKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~~-k~~LlVlDdv~~ 268 (831)
+....+. +.-+||+|.+..
T Consensus 144 l~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTT
T ss_pred HHHHHhcCCCCEEEEeChHH
Confidence 6666653 445999999843
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.13 E-value=0.036 Score=58.41 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD----DFDVVIWVVVSKDLKIERIQDDIWKKIGLCDN----------SW 238 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~ 238 (831)
.-.++.|+|.+|+||||||.+++.... ... .-..++|++....++...+. .++..++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~--~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ--LPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT--SCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecC
Confidence 567999999999999999999988743 111 23578999988877776654 34555554210 00
Q ss_pred CCCCHHHHHHHHHHHHc---CCcEEEEEcCCC
Q 003317 239 RSKSLEDKAVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 239 ~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
......+....+...++ .+.-+||+|.+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 11122233444555554 445588888874
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.11 E-value=0.019 Score=58.53 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHH-HHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDK-AVDI 250 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~-~~~l 250 (831)
.++-|.|++|+|||||+.+++.... ....-..++|++....++.. .+++++...+. ....+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3789999999999999999887764 11123478999988887753 36777764321 123345555 3333
Q ss_pred HHH--H-cCCcEEEEEcCCCCc
Q 003317 251 FRV--L-SKKKFVLLLDDMWKR 269 (831)
Q Consensus 251 ~~~--l-~~k~~LlVlDdv~~~ 269 (831)
... + .++.-++|+|.|...
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHhhccCceEEEEeccccc
Confidence 322 3 356789999998653
No 247
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.09 E-value=0.014 Score=61.57 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
..+++.|.|.+|+||||||.+++.... . .-..++|++....++.. .+..++..... ....+.++....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~--~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--R--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--H--CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHH
Confidence 567999999999999999999988764 1 22368899988777643 24555543211 012345555555
Q ss_pred HHHHHc-CCcEEEEEcCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~ 267 (831)
+....+ .+.-+||+|.+.
T Consensus 133 ~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHTCCSEEEEECGG
T ss_pred HHHHHhccCCCEEEEcCHH
Confidence 554443 445599999974
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.09 E-value=0.027 Score=58.84 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD----DFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSK 241 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 241 (831)
.-.++.|+|.+|+||||+|.+++.... ... .-..++|++....++...+. ++++.++..... ....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~--~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh--cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCC
Confidence 457999999999999999999987753 110 13478999988887776655 445666543210 0112
Q ss_pred CHH---HHHHHHHHHHc--CCcEEEEEcCCC
Q 003317 242 SLE---DKAVDIFRVLS--KKKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~---~~~~~l~~~l~--~k~~LlVlDdv~ 267 (831)
+.+ +....+...++ .+.-+||+|.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 222 34445555554 355688999874
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.04 E-value=0.06 Score=56.76 Aligned_cols=164 Identities=12% Similarity=-0.078 Sum_probs=98.9
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHH
Q 003317 165 VWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLE 244 (831)
Q Consensus 165 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 244 (831)
+.+.+.+.-.+++.++|+.|.||++.++.+.+... ...|+...-+.+....++.++...+-.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA---AQGFEEHHTFSIDPNTDWNAIFSLCQA--------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH---HHTCCEEEEEECCTTCCHHHHHHHHHH---------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH---hCCCCeeEEEEecCCCCHHHHHHHhcC---------------
Confidence 33444434567999999999999999999988764 124432222223333444443322211
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCC---cccccccccCCCCCCCCcEEEEEcCC-------hhHHhh-ccCCceEEcCCCC
Q 003317 245 DKAVDIFRVLSKKKFVLLLDDMWK---RVDLTQLGVPLPSPTTASKVVFTTRF-------VEVCGA-MKAHEYFKVECLA 313 (831)
Q Consensus 245 ~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~-~~~~~~~~l~~L~ 313 (831)
.-+-+++-++|+|++.. ...++.+...+.....++.+|++|.. ..+... ......++..+++
T Consensus 71 -------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 71 -------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp -------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred -------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 11235667888899865 23445454444333446666665532 233333 2345688999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCCchHHHH
Q 003317 314 HEKAWILFQEHVERQTLESHPDIPELAETVTKECGGLPLALIT 356 (831)
Q Consensus 314 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 356 (831)
.++....+.+.+...... -..+.+..+++.++|.+..+..
T Consensus 144 ~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 999988888877544311 1245678889999998877654
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.95 E-value=0.0037 Score=59.22 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC---CCHHHHHHHHHH---HhCCCCCCCCCCC----
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD---LKIERIQDDIWK---KIGLCDNSWRSKS---- 242 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~---~l~~~~~~~~~~~---- 242 (831)
....|.|++..|.||||.|-...-+.. ++=..+..+..-.. .....++..+.- +.+. .-.+...+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~----g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~ 101 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV----GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREAD 101 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH----HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHH
Confidence 345777788888999999999888764 34345666654432 233334333310 0000 00011111
Q ss_pred ---HHHHHHHHHHHHcCCcE-EEEEcCCCCc-----ccccccccCCCCCCCCcEEEEEcCCh
Q 003317 243 ---LEDKAVDIFRVLSKKKF-VLLLDDMWKR-----VDLTQLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 243 ---~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
........++.+.+.+| |||||++... ...+++...+........||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12233445556656666 9999998421 22222322232333456799999975
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.85 E-value=0.02 Score=59.89 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccC------------CCC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC--
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRK------------DDF--DVVIWVVVSKDLKIERIQDDIWKKIGLCDN-- 236 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-- 236 (831)
.-.++.|+|.+|+||||+|.+++.... .. +.. ..++|++....++...+.+ +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~--l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~ 173 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQ--NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTV 173 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTT--CGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh--ccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHH
Confidence 567999999999999999999887632 11 111 4789999888877776653 4556654311
Q ss_pred --C---CCCCCHH---HHHHHHHHHHcC--CcEEEEEcCCC
Q 003317 237 --S---WRSKSLE---DKAVDIFRVLSK--KKFVLLLDDMW 267 (831)
Q Consensus 237 --~---~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 267 (831)
. ....+.+ +....+...++. +.-+||+|.+.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 0112223 234455555543 44588888874
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.80 E-value=0.0036 Score=61.25 Aligned_cols=113 Identities=14% Similarity=-0.096 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFR 252 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (831)
.-.++.|+|..|+||||++..+.++.. .+-..++.+....+. . -...+++.++............+....+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~----~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE----YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH----hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 457899999999999999999888875 222234444433321 1 112344445443222122233444445554
Q ss_pred HHcCCcE-EEEEcCCCCc--ccccccccCCCCCCCCcEEEEEcCCh
Q 003317 253 VLSKKKF-VLLLDDMWKR--VDLTQLGVPLPSPTTASKVVFTTRFV 295 (831)
Q Consensus 253 ~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~ 295 (831)
.+.+.++ +||+|.+... +..+.+ ..+.+ .|..||+|-+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 4444445 9999998642 122222 11212 267788888854
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.73 E-value=0.0026 Score=57.77 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=32.9
Q ss_pred CcccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 154 PTVGLESTLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 468998888888877643 33445779999999999999988765
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.72 E-value=0.014 Score=69.79 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLESTLDKVWSCLGEE---------NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999888887776321 235899999999999999999998864
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.053 Score=58.49 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998875
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.59 E-value=0.012 Score=56.85 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=33.6
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 158 LESTLDKVWSCLGE---ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 158 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|++.++++.+.+.. ....+|+|.|++|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 55567777777654 3568999999999999999999988764
No 257
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.52 E-value=0.017 Score=68.28 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=37.0
Q ss_pred CCcccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 153 EPTVGLESTLDKVWSCLGE---------ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888776642 123479999999999999999999875
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.50 E-value=0.047 Score=56.05 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIF 251 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (831)
...+|+|+|.+|+||||++..++.... .... ..+..+.... .....+.+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH
Confidence 457999999999999999999988764 2122 2344444322 22334444444444444321 1123333333333
Q ss_pred HHHcCCcEEEEEcC
Q 003317 252 RVLSKKKFVLLLDD 265 (831)
Q Consensus 252 ~~l~~k~~LlVlDd 265 (831)
.+ .+.=++|+|-
T Consensus 179 -~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 -LF-SEYDHVFVDT 190 (296)
T ss_dssp -HG-GGSSEEEEEC
T ss_pred -Hh-cCCCEEEEeC
Confidence 23 3445788884
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.45 E-value=0.013 Score=56.89 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 160 STLDKVWSCLGE--ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+-.++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666653 4568999999999999999999988775
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.37 E-value=0.047 Score=53.79 Aligned_cols=88 Identities=23% Similarity=0.199 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--------------
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSW-------------- 238 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------------- 238 (831)
.-.++.|+|++|+|||||++.++.... . . -..++|+.... ....+...+ ..++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~-~-~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--R-D-GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKE 94 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--H-H-TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC--
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--H-C-CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccc
Confidence 457999999999999999999987653 1 1 12456665433 344444333 2443221100
Q ss_pred -------CCCCHHHHHHHHHHHHcC-CcE--EEEEcCCC
Q 003317 239 -------RSKSLEDKAVDIFRVLSK-KKF--VLLLDDMW 267 (831)
Q Consensus 239 -------~~~~~~~~~~~l~~~l~~-k~~--LlVlDdv~ 267 (831)
...+..+....+...+.. ++- ++|+|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 95 KEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred cCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 112455555555555432 333 99999975
No 261
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.23 E-value=0.12 Score=55.86 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNS-WRSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l 250 (831)
..++|.|+|.+|+||||++..++.... .+... .+.-++... .....+.+.......+.+.-. ....+........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR--EKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH--HTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 468999999999999999999998875 22122 344455432 233334344444444432111 0123444443333
Q ss_pred HHHHcCCcE-EEEEcCC
Q 003317 251 FRVLSKKKF-VLLLDDM 266 (831)
Q Consensus 251 ~~~l~~k~~-LlVlDdv 266 (831)
...++.+.| ++|+|-.
T Consensus 176 l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHhCCCCEEEEECC
Confidence 344442333 6667764
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.13 Score=53.54 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=37.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGL 233 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 233 (831)
....+++|+|+.|+||||+++.++.... . ... .+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 4578999999999999999999998775 1 222 233433221 22344455555666653
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.09 E-value=0.091 Score=56.64 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK-DLKIERIQDDIWKKIGLCDNSW-RSKSLEDKAVDI 250 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 250 (831)
...+|.++|.+|+||||++..++.... . ... .+..++... .....+.+.......+.+.... ...+........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~-~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--K-RGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--H-TTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--H-cCC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 468999999999999999999998875 2 222 344444322 1122333444445544432111 122333333333
Q ss_pred HHHHc-CCcEEEEEcCCC
Q 003317 251 FRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (831)
...+. ...=++|+|-..
T Consensus 172 l~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHHTTTTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 33333 233366777553
No 264
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.03 E-value=0.12 Score=55.40 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh-hc-cCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL-DS-RKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS-------WRSKSL 243 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (831)
.-.++.|+|++|+|||||+..++-... +. ....-..++|++....++...+ +.+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 567999999999999999998764432 00 0012356889987776665544 3466666543110 011222
Q ss_pred H---HHHHHHHHHHc-CCcEEEEEcCCC
Q 003317 244 E---DKAVDIFRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 244 ~---~~~~~l~~~l~-~k~~LlVlDdv~ 267 (831)
. +....+...+. .+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 22333333333 456788999864
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.96 E-value=0.013 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998753
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.95 E-value=0.014 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|+|.|++|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.95 E-value=0.15 Score=55.04 Aligned_cols=100 Identities=18% Similarity=0.294 Sum_probs=62.7
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC------CC
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLC------DN 236 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~ 236 (831)
+++.+.. ..-.-++|+|.+|+|||+|++++.+... +.+-+.++++-+++.. .+.++.+++...=... ..
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~---~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA---KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT---TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH---hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 5555544 3567889999999999999999998752 2445677888888764 3456667776542221 00
Q ss_pred ----CCCCCCHHHH------HHHHHHHH---cCCcEEEEEcCCC
Q 003317 237 ----SWRSKSLEDK------AVDIFRVL---SKKKFVLLLDDMW 267 (831)
Q Consensus 237 ----~~~~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 267 (831)
...+.+.... .-.+.+++ .++.+|+++||+-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0012222211 11223333 4689999999984
No 268
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.92 E-value=0.056 Score=62.99 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCcccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 153 EPTVGLESTLDKVWSCLGE-------------ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
..+.|.++.++++.+.+.- ...+-|.++|++|+|||.+|+++++... .. ++.++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~----~~-----f~~v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----AN-----FISIK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT----CE-----EEECC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC----Cc-----eEEec----
Confidence 3456888888887765521 1345688999999999999999999864 22 22222
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEEcCCCCcc--------c----cc----ccccCCC--C
Q 003317 220 IERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVLSKKKFVLLLDDMWKRV--------D----LT----QLGVPLP--S 281 (831)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~----~~----~l~~~l~--~ 281 (831)
..++ +... ...+.......+...-+..+++|++|+++... . .. .+...+. .
T Consensus 544 ~~~l----~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 544 GPEL----LTMW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHHH----HTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred cchh----hccc-------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1221 1111 22333333333333335678999999986421 0 01 1111111 1
Q ss_pred CCCCcEEEEEcCChh-----HHhhccCCceEEcCCCChHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHhCCC
Q 003317 282 PTTASKVVFTTRFVE-----VCGAMKAHEYFKVECLAHEKAWILFQEHVERQTLESHPDIPELAETVTKECGGL 350 (831)
Q Consensus 282 ~~~gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 350 (831)
...+--||-||-..+ +.+...-...+.+..-+.++-.++|+.+........+.++ ..|++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 112222333443222 2221123456777776777777787766543332222233 4455666654
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.016 Score=55.76 Aligned_cols=27 Identities=37% Similarity=0.293 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.|+|++|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998763
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.85 E-value=0.015 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.84 E-value=0.071 Score=54.84 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHH--HHHHHHHHHhCCCCCC-CCCCCHHHH-HH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIE--RIQDDIWKKIGLCDNS-WRSKSLEDK-AV 248 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~ 248 (831)
...+|.|+|.+|+||||++..++.... .. -..+.++.. +.+... +-+...++..+.+.-. ....+.... ..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~--g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DE--GKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD 177 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HT--TCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hc--CCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 467999999999999999999998875 11 123444443 233322 2234455555542210 012222222 23
Q ss_pred HHHHHHcCCcEEEEEcCCC
Q 003317 249 DIFRVLSKKKFVLLLDDMW 267 (831)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~ 267 (831)
.+...+....-++|+|-.-
T Consensus 178 al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHhcCCCEEEEECCC
Confidence 4444455555588888653
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.82 E-value=0.12 Score=52.87 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD-LKIERIQDDIWKKIGLCDNS-WRSKSLEDKAVDIF 251 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 251 (831)
..+++++|.+|+||||++..++.... .. -..+.++..... ....+.++...+..+.+.-. ....+..+......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 67999999999999999999988775 11 224555554322 22333344555555543111 01234445544444
Q ss_pred HHHcCCcE-EEEEcCC
Q 003317 252 RVLSKKKF-VLLLDDM 266 (831)
Q Consensus 252 ~~l~~k~~-LlVlDdv 266 (831)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 44543344 7788864
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.76 E-value=0.063 Score=51.75 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh----------CCCCCCCCCCCHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI----------GLCDNSWRSKSLED 245 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l----------~~~~~~~~~~~~~~ 245 (831)
+|.|.|++|+||||.|+.+++++. ...++ ..+++++-+..- -..+ ...+.+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---------~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G---~lvpd~i 63 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---------FVHIS------TGDILREAVQKGTPLGKKAKEYMERG---ELVPDDL 63 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---------CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHT---CCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---------CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcC---CcCCHHH
Confidence 578999999999999999998874 12232 334444332210 0000 2234455
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCC
Q 003317 246 KAVDIFRVLSKKKFVLLLDDMWK 268 (831)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~ 268 (831)
....+.+.+..... +|||..-.
T Consensus 64 v~~lv~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 64 IIALIEEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHHHHHHCCSSSC-EEEESCCC
T ss_pred HHHHHHHhhccCCc-eEecCCch
Confidence 56667777765443 67898743
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.74 E-value=0.07 Score=56.23 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKDDF-DVVIWVVVSKDLKIERIQDDIWKKIGLCDN----------SWRS 240 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~ 240 (831)
.-.++.|+|++|+|||||+..++...... ..+.. ..++|++....+....+ ..+++..+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999998875200 01111 24588887665543333 334444432210 0001
Q ss_pred CCHHHHHHHHHHHHc------CCcEEEEEcCCCC
Q 003317 241 KSLEDKAVDIFRVLS------KKKFVLLLDDMWK 268 (831)
Q Consensus 241 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 268 (831)
....+....+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112334445555554 4677999999854
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.11 Score=54.00 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
.-.++.|.|.+|+||||+|.+++.... ..+ ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS--DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 567999999999999999999987764 222 577887655 4567777777654
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.017 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.69 E-value=0.021 Score=55.07 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 171 EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 171 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.....+|+|+|++|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999998764
No 278
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.63 E-value=0.049 Score=57.04 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCCCCC
Q 003317 164 KVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCD-NSWRSK 241 (831)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~ 241 (831)
++++.+.. ..-..++|+|.+|+|||||++.+.+.... ....++++ ++-+++... -..++.+.+.... ....+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I-~~lIGER~~---Ev~~~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLM-VLLIDERPE---EVTEMQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEE-EEEESSCHH---HHHHHHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEE-EEEecCChH---HHHHHHHHhCeEEEEeCCCC
Confidence 45555544 35678999999999999999998876530 11334444 466776532 2223333331100 000122
Q ss_pred CHHHHHH------HHHHHH--cCCcEEEEEcCCC
Q 003317 242 SLEDKAV------DIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 242 ~~~~~~~------~l~~~l--~~k~~LlVlDdv~ 267 (831)
+...... .+.+++ .++.+||++||+.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 2221111 112223 5899999999984
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.59 E-value=0.02 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.57 E-value=0.022 Score=59.88 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|++..++.+...+..+ .-+.++|++|+|||++|+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46789999998888877653 4688999999999999999998754
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.54 E-value=0.02 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
...+|+|+|++|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999765
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.53 E-value=0.14 Score=55.11 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHH--HHHHHHHHhCCCCCCC-CCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIER--IQDDIWKKIGLCDNSW-RSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~~~~-~~~~~~~~~~~ 249 (831)
...+|.|+|.+|+||||++..++.... ..-..+..+.. +.+.... .+.......+.+.-.. ...+..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~----~~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~ 171 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK----GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRR 171 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH----TTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHH
Confidence 457999999999999999999998875 22223444443 3334332 2344455555431110 12333444333
Q ss_pred HHHHHcCCcE-EEEEcCC
Q 003317 250 IFRVLSKKKF-VLLLDDM 266 (831)
Q Consensus 250 l~~~l~~k~~-LlVlDdv 266 (831)
..+.++.+.| ++|+|-.
T Consensus 172 ~l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHCCCCEEEEcCC
Confidence 3344432334 6677743
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.53 E-value=0.017 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988753
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.48 E-value=0.021 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINN 196 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (831)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.43 E-value=0.041 Score=57.29 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 156 VGLESTLDKVWSCLG----EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 156 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555566655552 35667899999999999999999988754
No 286
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.39 E-value=0.028 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.|.|++|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998875
No 287
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.36 E-value=0.036 Score=54.42 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 162 LDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 162 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+.+.+.+.......|+|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444445688999999999999999999988753
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.36 E-value=0.025 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998775
No 289
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.35 E-value=0.098 Score=66.55 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
..+.|-|+|++|+|||+||.++..... ..=..++|+++...++... ++.++..... ....+.++....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~----~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH----TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 678999999999999999999988765 2334678888877766555 4555533211 122344556666
Q ss_pred HHHHHc-CCcEEEEEcCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~ 267 (831)
++...+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 665554 466799999984
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.025 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.32 E-value=0.038 Score=58.83 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 155 TVGLESTLDKVWSCLG-------------E--ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 155 ~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5898888888887772 1 1346789999999999999999998753
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.30 E-value=0.02 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.27 E-value=0.039 Score=56.41 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|+|+|..|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999988775
No 294
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.27 E-value=0.021 Score=60.53 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.++|.+..+..+...+......-|.|+|++|+|||++|+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 45789988666654444333334589999999999999999998753
No 295
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.25 E-value=0.0026 Score=60.47 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++.|+|+.|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977776653
No 296
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.22 E-value=0.12 Score=55.93 Aligned_cols=91 Identities=15% Similarity=0.292 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHHH-
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCD-----NSWRSKSLEDK- 246 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~- 246 (831)
-..++|+|.+|+|||||+..+..... . ..-+.++++.+++.. ...++..++...-.+.. ....+......
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~--~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA--Q-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH--H-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh--h-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 34689999999999999999988754 1 222445667777664 34455554543210000 00011111111
Q ss_pred ----HHHHHHHH---cCCcEEEEEcCCC
Q 003317 247 ----AVDIFRVL---SKKKFVLLLDDMW 267 (831)
Q Consensus 247 ----~~~l~~~l---~~k~~LlVlDdv~ 267 (831)
.-.+.+++ .+++.|+++||+.
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11223333 4789999999984
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.18 E-value=0.025 Score=53.41 Aligned_cols=27 Identities=41% Similarity=0.324 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.|+|++|+||||+|+.+.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999998753
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.18 E-value=0.03 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.12 E-value=0.026 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.12 E-value=0.047 Score=58.44 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=35.6
Q ss_pred CcccchHHHHHHHHHhc------------------------------CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 154 PTVGLESTLDKVWSCLG------------------------------EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888888887776662 01345688999999999999999998753
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.12 E-value=0.028 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998764
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.11 E-value=0.03 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998764
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.10 E-value=0.019 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999988753
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.06 E-value=0.029 Score=54.46 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|+|+|+.|+||||+++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999999988753
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.06 E-value=0.03 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++|.|+|+.|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999988753
No 306
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.05 E-value=0.037 Score=54.08 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 159 ESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 159 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++..+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555445788999999999999999999988753
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.04 E-value=0.026 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998875
No 308
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.02 E-value=0.99 Score=47.93 Aligned_cols=73 Identities=5% Similarity=0.100 Sum_probs=39.7
Q ss_pred cceeEEEeccccccccCCC--CCCCCcccccccC-cCccch-hhhcCCcccEEeccCCCCCCCCChhhhcCCccCcEeee
Q 003317 515 KGVRKISLMQNQIRNLPFT--PICPDLQTLFLKG-INELPR-ELKALVNLKYLNLDHTTFLHPIPSPLISSFSMLLVLRM 590 (831)
Q Consensus 515 ~~lr~L~l~~~~i~~lp~~--~~~~~Lr~L~L~~-~~~lp~-~i~~L~~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l 590 (831)
.+++.+.+. .++..++.. ..|.+|+.+.|.. +..++. .+.++ +|..+.+..+ +..++..++.. .+|+.+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce--eeEeccceecc-CCcccccC
Confidence 456666664 345566554 6777777777754 455543 23333 4555555443 45555544433 35666666
Q ss_pred cc
Q 003317 591 FN 592 (831)
Q Consensus 591 ~~ 592 (831)
..
T Consensus 121 p~ 122 (379)
T 4h09_A 121 PG 122 (379)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.01 E-value=0.026 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 310
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.01 E-value=0.024 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997753
No 311
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.99 E-value=0.16 Score=54.97 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=63.7
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------C
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLC-------D 235 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~ 235 (831)
+++.|.. ..-.-++|+|.+|+|||+|++++.+... +.+-+.++++-+++.. ...++.+++...-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a---~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA---KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT---TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH---hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 4455543 3556789999999999999999998753 3455788888888876 4556777776542221 0
Q ss_pred C----CCCCCCHH------HHHHHHHHHHc---CCcEEEEEcCCC
Q 003317 236 N----SWRSKSLE------DKAVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 236 ~----~~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
. ...+.+.. ...-.+.++++ ++.+|+++||+-
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 00122222 12233445554 589999999984
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.95 E-value=0.031 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.93 E-value=0.032 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999763
No 314
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.91 E-value=0.034 Score=55.56 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997753
No 315
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.91 E-value=0.037 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.|.|++|+||||.|+.+++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999999998874
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.89 E-value=0.053 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.88 E-value=0.033 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998864
No 318
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.87 E-value=0.14 Score=50.71 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDD 226 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 226 (831)
.-.++.|.|++|+||||+|.+++.... ..-..++|++... ...++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~----~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL----KMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH----HTTCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH----hcCCeEEEEEccC--CHHHHHHH
Confidence 457999999999999999988876653 1123577776544 33444333
No 319
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.87 E-value=0.037 Score=61.13 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=37.5
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35789999998888777544 4788999999999999999998763
No 320
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.86 E-value=0.035 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988754
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.82 E-value=0.037 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988753
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.80 E-value=0.034 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.79 E-value=0.036 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 324
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.78 E-value=0.028 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.039 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 326
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.76 E-value=0.038 Score=52.64 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56799999999999999999998775
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.73 E-value=0.038 Score=51.39 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.71 E-value=0.04 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
....|+|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 329
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.70 E-value=0.036 Score=57.40 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
++.+||+|.|-|||||||.+..+.--.. ..-..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA----~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS----ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH----HCCCeEEEEecCC
Confidence 4789999999999999999998888775 1222456666553
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.68 E-value=0.042 Score=50.86 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++++|+|..|+||||++..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999998864
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.67 E-value=0.03 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988753
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.61 E-value=0.037 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINN 196 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (831)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.60 E-value=0.042 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...|+|.|+.|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.58 E-value=0.044 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998775
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.54 E-value=0.041 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.50 E-value=0.036 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.50 E-value=0.047 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999764
No 338
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.48 E-value=0.038 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQIN 195 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (831)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999643
No 339
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.47 E-value=0.1 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 340
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.43 E-value=0.96 Score=49.46 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
...++.|.|.+|+||||+|..++.... .. .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~--~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA--TK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH--HH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--Hh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 557999999999999999999988764 11 123577776443 4566666654
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.43 E-value=0.049 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999875
No 342
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.42 E-value=0.042 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345799999999999999999998765
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.41 E-value=0.045 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999987653
No 344
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.37 E-value=0.048 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.33 E-value=0.48 Score=52.19 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|+|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998775
No 346
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.33 E-value=0.05 Score=49.96 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998875
No 347
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.29 E-value=0.036 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988754
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.28 E-value=0.043 Score=52.99 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINN 196 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~ 196 (831)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.28 E-value=0.064 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998875
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.23 E-value=0.051 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.22 E-value=0.053 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 352
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.21 E-value=0.053 Score=56.10 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|+|+|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999988765
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.20 E-value=0.04 Score=53.87 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998764
No 354
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.19 E-value=0.28 Score=50.97 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKI 231 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 231 (831)
.-.++.|.|.+|+||||+|..++.... . .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a--~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL--N--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH--H--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--H--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 457999999999999999999988865 2 2245666654 456677777776543
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.18 E-value=0.051 Score=52.27 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|.|.|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988753
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.17 E-value=0.056 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567999999999999999999988653
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.12 E-value=0.051 Score=54.46 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456999999999999999999997753
No 358
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.09 E-value=0.38 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+++|+|.+|+|||||++.++....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 467999999999999999999988764
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.08 E-value=0.054 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.05 E-value=0.28 Score=50.19 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHH--HHHHHHHHHhCCCCCCC-CCCCHHHHHH-
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIE--RIQDDIWKKIGLCDNSW-RSKSLEDKAV- 248 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~- 248 (831)
...+++|+|.+|+||||++..++.... .. -..+.++... ..... ..+..+.+..+...-.. ...+..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~--~~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~ 171 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRR 171 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH--HT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--Hc--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHH
Confidence 457999999999999999999998875 11 1234444432 22222 22334445555432110 1223444433
Q ss_pred HHHHHHcCCcEEEEEcCC
Q 003317 249 DIFRVLSKKKFVLLLDDM 266 (831)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv 266 (831)
.+........=++|+|--
T Consensus 172 ~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 172 VEEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHHTCCEEEEECC
T ss_pred HHHHHHhCCCCEEEEeCC
Confidence 233332244457888875
No 361
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.03 E-value=0.17 Score=49.63 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc-cCC-CCCEEEEEEeCCCCC
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDS-RKD-DFDVVIWVVVSKDLK 219 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~-~F~~~~wv~~s~~~~ 219 (831)
.-.+++|+|++|+|||||++.++...... -.. .-..++|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 55799999999999999999998754300 011 234678887655444
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.02 E-value=0.092 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.....|+|.|++|+||||+|+.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998875
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.02 E-value=0.059 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.01 E-value=0.033 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|+|.|+.|+||||+|+.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998864
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.96 E-value=0.062 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355799999999999999999998864
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.96 E-value=0.061 Score=51.21 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998763
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.95 E-value=0.041 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++++|+|..|+|||||++.+..-..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36899999999999999999988875
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.94 E-value=0.066 Score=57.84 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGE--------------ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..+..+...+.. -..+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3568988888887665521 1346799999999999999999998864
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.90 E-value=0.063 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998874
No 370
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.90 E-value=0.056 Score=52.72 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999988753
No 371
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.89 E-value=0.084 Score=50.17 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.3
Q ss_pred HHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 162 LDKVWSCLGEE-NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 162 ~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+..+..++.+- ....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455555431 234799999999999999999998864
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.88 E-value=0.058 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.84 E-value=0.06 Score=52.38 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988753
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.84 E-value=0.065 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988763
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.71 E-value=0.096 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999887653
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.67 E-value=0.073 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|++|+||||+++.++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998875
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.61 E-value=0.066 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.61 E-value=0.061 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.58 E-value=0.061 Score=51.08 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988763
No 380
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.55 E-value=0.28 Score=62.50 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++.|+|++|+||||||.+++.... ..-..++|++....++.. .++.++..... .+..+.++....
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a----~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~ 452 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH----TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH----hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHH
Confidence 567999999999999999999998875 222468888887776643 25666654321 123456666666
Q ss_pred HHHHHc-CCcEEEEEcCCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~~ 268 (831)
++...+ .+.-+||+|.+..
T Consensus 453 ~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGG
T ss_pred HHHHHHhcCCcEEEECCHHH
Confidence 665553 4566999998853
No 381
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.52 E-value=0.079 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++++|+|+.|+|||||+..+.....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 367999999999999999999988764
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.50 E-value=0.071 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 383
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.49 E-value=0.098 Score=54.08 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 159 ESTLDKVWSCLGEE---NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 159 ~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...++.+.+++... ....+.|+|++|+|||+||+.+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444455555431 25788999999999999999999976
No 384
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.49 E-value=0.29 Score=50.69 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999988775
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.46 E-value=0.077 Score=51.47 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999988753
No 386
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.46 E-value=0.35 Score=50.58 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC
Q 003317 163 DKVWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD 217 (831)
Q Consensus 163 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~ 217 (831)
-++++.+.. ..-..++|+|.+|+|||+|++.+.+.... ....+.+ +++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEE-EEEEeccC
Confidence 356676655 45668899999999999999999887530 1123443 45666654
No 387
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.41 E-value=0.44 Score=52.03 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
...++.|.|.+|+||||+|..++.... . ..-..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a--~-~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA--L-KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH--H-TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--H-hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 457999999999999999999988764 2 122357776654 4566777776644
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.36 E-value=0.084 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+++.+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988764
No 389
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.33 E-value=0.065 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.30 E-value=0.079 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.30 E-value=0.079 Score=51.96 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.19 E-value=0.079 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998654
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.14 E-value=0.21 Score=49.18 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIW 228 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 228 (831)
...|.|.|+.|+||||+++.+.+... ..++..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~---~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ---QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH---HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999999875 24566444444333333344444444
No 394
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.08 E-value=0.075 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINN 196 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~ 196 (831)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999999884
No 395
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.08 E-value=0.21 Score=48.31 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
..|.|.|+.|+||||+++.+.+... ...+..+....-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~---~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE---QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH---HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999999875 234433444443333345555666654
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.07 E-value=0.17 Score=49.79 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....|+|.|+.|+||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999875
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.05 E-value=0.067 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55799999999999999999887654
No 398
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.02 E-value=0.054 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=17.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH-Hhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQIN-NKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~-~~~ 198 (831)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 399
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.02 E-value=0.17 Score=52.32 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCC
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKD 217 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~ 217 (831)
...++|+|+|-||+||||+|..++.... .. -..++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~--G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--IL--GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HT--TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HC--CCeEEEEeCCCC
Confidence 4678999999999999999999988875 22 224666665543
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.99 E-value=0.099 Score=53.74 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+++|+|+.|+||||+++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998875
No 401
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.96 E-value=0.13 Score=45.49 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=32.9
Q ss_pred cccEEeccCCCCCCCCChhhhcCCccCcEeeeccccCC
Q 003317 559 NLKYLNLDHTTFLHPIPSPLISSFSMLLVLRMFNCKSS 596 (831)
Q Consensus 559 ~Lr~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 596 (831)
+|++|+|++| .|+.+|.+++..+.+|++|+|.+|...
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 6899999999 799999988899999999999988553
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.96 E-value=0.097 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINN 196 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~ 196 (831)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.93 E-value=0.07 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987653
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.91 E-value=0.069 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.192 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.-.+++|+|+.|+|||||++.++.-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999876
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.86 E-value=0.093 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.84 E-value=0.1 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355799999999999999999998864
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.84 E-value=0.096 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998875
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.83 E-value=0.095 Score=54.02 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.++|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999875
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.80 E-value=0.28 Score=61.70 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-+++.|+|.+|+||||||.+++.... . .-..++|++....++.. .++.++...+. ....+.++....
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~ 452 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--R--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 452 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--H--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--H--hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHH
Confidence 567999999999999999999988765 2 23468899887777653 25666653221 123456666666
Q ss_pred HHHHHc-CCcEEEEEcCCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMWK 268 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~~ 268 (831)
+....+ .+.-+||+|.+..
T Consensus 453 l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 453 CDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHhcCCCEEEECCHHH
Confidence 665553 4566999999854
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.79 E-value=0.097 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.78 E-value=0.096 Score=53.42 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|.|+|+.|+||||||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46899999999999999999987653
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.77 E-value=0.098 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 413
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.73 E-value=0.68 Score=51.48 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
.-.++.|.|.+|+||||+|.+++.... ..+=..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a---~~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG---TAMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT---TTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH---HhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 457899999999999999999988864 12123577776544 566777766544
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.71 E-value=0.3 Score=47.26 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
...|.|.|+.|+||||+++.+.+... ...+..+ ...-.......+.+++++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~---~~~~~v~-~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR---ERGIEVQ-LTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEE-EEESSCSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH---HcCCCcc-cccCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999875 2445543 2222222223344455443
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.69 E-value=1.3 Score=58.50 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNSWRSKSLEDKAVDIFRVL 254 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (831)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+-..+...... ..... .-.-
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-----~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~~~-------~P~~ 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-----LY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-KGLTL-------LPKS 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-----SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTEEE-------EEBS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-----CC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCccc-------cCCC
Confidence 5678999999999999987776532 22 456678888878777766666554321000 00000 0000
Q ss_pred cCCcEEEEEcCCC
Q 003317 255 SKKKFVLLLDDMW 267 (831)
Q Consensus 255 ~~k~~LlVlDdv~ 267 (831)
.+++.++.+||+.
T Consensus 1334 ~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1334 DIKNLVLFCDEIN 1346 (2695)
T ss_dssp SSSCEEEEEETTT
T ss_pred CCceEEEEecccc
Confidence 3678899999974
No 416
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.63 E-value=0.13 Score=58.85 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 153 EPTVGLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45689998888887777554 5889999999999999999998753
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.62 E-value=0.11 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998863
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.59 E-value=0.1 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQIN 195 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (831)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.53 E-value=0.083 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999999999999999998764
No 420
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.49 E-value=0.082 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999987654
No 421
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.48 E-value=0.094 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999998775
No 422
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.41 E-value=0.085 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999987654
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.37 E-value=0.1 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999874
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.34 E-value=0.37 Score=50.89 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=29.3
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 162 LDKVWSCLG--EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 162 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++.+.+. .....+|+|+|.+|+||||++..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444443 35678999999999999999999988764
No 425
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.25 E-value=0.2 Score=53.70 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCC----EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC--
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFD----VVIWVVVSKDL-KIERIQDDIWKKIGLCDN-- 236 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-- 236 (831)
.++.+.. ..-.-++|.|.+|+|||+|+.++.+... .+-+ .++++-+++.. .+.++.+++...=.+...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~----~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv 216 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQAT----VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM 216 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCB----CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHH----hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence 4455543 2344578999999999999999998754 2223 66777777653 455666665543111000
Q ss_pred --CCCCCCHHHH------HHHHHHHHc---CCcEEEEEcCCC
Q 003317 237 --SWRSKSLEDK------AVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 237 --~~~~~~~~~~------~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
...+.+.... .-.+.++++ ++.+|+++||+-
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0012222221 123345553 689999999984
No 426
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.19 E-value=0.11 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5579999999999999999999875
No 427
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.19 E-value=0.092 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56799999999999999999998754
No 428
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.18 E-value=0.094 Score=51.98 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999987654
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.16 E-value=0.14 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+++|+|+.|+||||+++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999998875
No 430
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.14 E-value=0.13 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
..++|.|+|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 357899999999999999999988753
No 431
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.12 E-value=0.3 Score=50.08 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=35.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
..-.+++|+|++|+|||||++.++.... .. .-..++|+.... +..++...+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~-~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG--TA-MGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH--HT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH--HH-cCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3557999999999999999999988765 11 112456665432 344444444443
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.12 E-value=0.24 Score=48.16 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=35.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
.....|.|.|+.|+||||+++.+.+... ....+..+....-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~--~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS--EIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh--hccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 4567999999999999999999999875 1023444332222333334444555554
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.11 E-value=0.08 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988653
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.10 E-value=0.096 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999987654
No 435
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.10 E-value=0.096 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 56799999999999999999987654
No 436
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.09 E-value=0.097 Score=51.46 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998764
No 437
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.09 E-value=0.12 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998764
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.08 E-value=0.082 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 439
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.04 E-value=0.1 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999987654
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.02 E-value=0.099 Score=52.04 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.97 E-value=0.12 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998764
No 442
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.94 E-value=0.38 Score=60.47 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKKIGLCDNS---WRSKSLEDKAVD 249 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 249 (831)
.-++|-|+|+.|+||||||.++..... ..=...+|+...+..+..- ++.+|...+. ......++....
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~----~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH----hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHH
Confidence 458999999999999999999998765 4456788998887777653 7777765432 134445666666
Q ss_pred HHHHHc-CCcEEEEEcCCC
Q 003317 250 IFRVLS-KKKFVLLLDDMW 267 (831)
Q Consensus 250 l~~~l~-~k~~LlVlDdv~ 267 (831)
+...++ +..-+||+|-|-
T Consensus 1501 ~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHTCCSEEEESCST
T ss_pred HHHHHHcCCCCEEEEccHH
Confidence 666665 456699999984
No 443
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.88 E-value=0.19 Score=50.34 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEe-CCCCCHHHHHHHHHH--HhCCCCCCCCCCCHHHHHH
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVV-SKDLKIERIQDDIWK--KIGLCDNSWRSKSLEDKAV 248 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~ 248 (831)
....+++|+|+.|+||||+++.+...... .+...+++.- .-.+-.... ..+.. .++. .. .....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~----~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~---~~l~~ 89 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ----TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DT---KSFAD 89 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH----HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TB---SCHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC----CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CH---HHHHH
Confidence 45679999999999999999999876541 1122222211 100000000 00000 0110 01 12244
Q ss_pred HHHHHHcCCcEEEEEcCCCCcccccccccCCCCCCCCcEEEEEcCChhH
Q 003317 249 DIFRVLSKKKFVLLLDDMWKRVDLTQLGVPLPSPTTASKVVFTTRFVEV 297 (831)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 297 (831)
.+...+..++=++++|+..+......+.... ..|.-|++||-+.++
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 5666666677788999986443322221111 235668888876554
No 444
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.85 E-value=0.38 Score=52.24 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHH-HHHHhhhhccCCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLT-QINNKFLDSRKDDFD-VVIWVVVSKDL-KIERIQDDIWKKIGLCDN---- 236 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---- 236 (831)
.++.+.. ..-.-++|+|.+|+|||+||. .+.+.. .-+ .++++-+++.. .+.++.+++...-.+...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK------GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG------SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh------cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 4555543 345678999999999999965 666653 234 34677777764 345666666543222110
Q ss_pred CCCCCCHHHH------HHHHHHHH--cCCcEEEEEcCCC
Q 003317 237 SWRSKSLEDK------AVDIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 237 ~~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 267 (831)
...+.+.... .-.+.+++ .++..|+++||+-
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0012222111 11233344 4799999999984
No 445
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.82 E-value=0.11 Score=52.11 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999999999999999997654
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.73 E-value=0.11 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55799999999999999999987653
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.72 E-value=0.11 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999997754
No 448
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.66 E-value=0.48 Score=51.32 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHH-HHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----C
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLL-TQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN----S 237 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 237 (831)
.++.+.. ..-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. .+.++.+++.+.=.+... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 4455543 34567899999999999997 4565542 222245788888764 345666665443211110 0
Q ss_pred CCCCCHHHH------HHHHHHHH--cCCcEEEEEcCCC
Q 003317 238 WRSKSLEDK------AVDIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 238 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 267 (831)
..+.+.... .-.+.+++ +++..||++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 011222111 11222333 5799999999984
No 449
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.58 E-value=0.11 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987764
No 450
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.57 E-value=0.17 Score=54.23 Aligned_cols=101 Identities=12% Similarity=0.187 Sum_probs=57.2
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccC--------CCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCC
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRK--------DDFD-VVIWVVVSKDL-KIERIQDDIWKKIGL 233 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~ 233 (831)
.++.+.. ..-.-++|.|.+|+|||+|+.++++... .. ++=+ .++++-+++.. .+.++.+++...=..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~--a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~ 214 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQAT--VRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL 214 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCB--CCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHH--hcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc
Confidence 4455543 2445678999999999999999988754 21 1112 56677777653 345555554432101
Q ss_pred CC-----CCCCCCCHHHH-----HHHHHHHHc---CCcEEEEEcCCC
Q 003317 234 CD-----NSWRSKSLEDK-----AVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 234 ~~-----~~~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
.. ...+....... .-.+.++++ ++.+|+++||+-
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 00 01122222222 123344543 689999999984
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.53 E-value=0.14 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 452
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.47 E-value=0.16 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
+-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998763
No 453
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.47 E-value=0.17 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.46 E-value=0.12 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55799999999999999999987654
No 455
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.45 E-value=0.12 Score=52.50 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55799999999999999999987654
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.43 E-value=0.14 Score=48.93 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 457
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.41 E-value=0.15 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998753
No 458
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.41 E-value=0.12 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.22 E-value=0.15 Score=48.26 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-+.|.|.|++|+||||||..+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678999999999999999998764
No 460
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.10 E-value=0.42 Score=45.54 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWK 229 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 229 (831)
.|+|=|.-|+||||.++.+++... .....++...-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~----~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE----KRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 478889999999999999999886 22223444444444445555555554
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.04 E-value=0.15 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.-.++.|+|++|+|||||+..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987543
No 462
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.03 E-value=0.24 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.190 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
-.|.+.|.||+||||+|..+.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578899999999999999988875
No 463
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.02 E-value=0.76 Score=49.96 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLKIERIQDDIWKK 230 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 230 (831)
...++.|.|.+|+||||+|.+++.... .. -..++|++.- .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a--~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS--DN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH--HT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH--Hc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 557999999999999999999988875 22 2356766544 3445555555543
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.99 E-value=0.19 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998865
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.98 E-value=0.16 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999988764
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.98 E-value=0.18 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 467
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.96 E-value=0.19 Score=53.16 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
.++|+|.|+.|+||||||..++....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 36899999999999999999998764
No 468
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.90 E-value=1.3 Score=48.54 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK-IERIQDDI 227 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 227 (831)
+++.+.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.++.+++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~------~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS------DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS------SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc------CCCEEEEEEecccHHHHHHHHHHH
Confidence 5555544 356788999999999999999987763 235788888888764 44555554
No 469
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.84 E-value=0.12 Score=48.67 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 470
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.76 E-value=0.17 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998764
No 471
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.66 E-value=0.26 Score=53.25 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=58.7
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCC--CCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKD--DFDVVIWVVVSKDL-KIERIQDDIWKKIGLCDN---- 236 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---- 236 (831)
+++.+.. ..-.-++|.|.+|+|||+|+.++++... ... .=+.++++-+++.. .+.++.+++...=.+...
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~--~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAS--VPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCB--CTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHh--hccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 4555543 3445678899999999999999998864 211 11456677777654 455666666643211100
Q ss_pred CCCCCCHHHH------HHHHHHHHc---CCcEEEEEcCCC
Q 003317 237 SWRSKSLEDK------AVDIFRVLS---KKKFVLLLDDMW 267 (831)
Q Consensus 237 ~~~~~~~~~~------~~~l~~~l~---~k~~LlVlDdv~ 267 (831)
...+.+.... .-.+.++++ ++.+|+++||+-
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 0012222211 122334443 699999999973
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.65 E-value=0.21 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
...|+|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998863
No 473
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.63 E-value=0.33 Score=53.49 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 156 VGLESTLDKVWSCLG--EENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 156 vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+.|.+..+.+.+... .....+|.+.|++|+||||+|+.+.....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 445444444444441 23557999999999999999999999975
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.62 E-value=0.2 Score=53.06 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999764
No 475
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.61 E-value=0.42 Score=48.13 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCC
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSK 216 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~ 216 (831)
++|+|.|-||+||||+|..++.... ..-..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la----~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH----AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH----TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH----HCCCcEEEEcCCC
Confidence 5788899999999999999998875 2223456666543
No 476
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.61 E-value=0.32 Score=52.33 Aligned_cols=30 Identities=30% Similarity=0.233 Sum_probs=25.6
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 170 GEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 170 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
......+++|+|+.|+||||+.+.+.....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345667999999999999999999988763
No 477
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.60 E-value=0.15 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999988754
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.52 E-value=0.13 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988664
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.48 E-value=0.18 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 176 IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 480
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.48 E-value=0.56 Score=50.92 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=55.2
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHH-HHHHhhhhccCCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLT-QINNKFLDSRKDDFD-VVIWVVVSKDL-KIERIQDDIWKKIGLCDN---- 236 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---- 236 (831)
.++.+.. ..-.-++|+|.+|+|||+||. .+.+.. .-+ .++++-+++.. .+.++.+.+...=.+...
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~------~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK------GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT------TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh------cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4455543 345678999999999999965 666653 244 34677777764 345666666542111100
Q ss_pred CCCCCCH-HHH-----HHHHHHHH--cCCcEEEEEcCCC
Q 003317 237 SWRSKSL-EDK-----AVDIFRVL--SKKKFVLLLDDMW 267 (831)
Q Consensus 237 ~~~~~~~-~~~-----~~~l~~~l--~~k~~LlVlDdv~ 267 (831)
...+.+. .+. .-.+.+++ .++..|+++||+-
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 0012222 111 11233344 4799999999984
No 481
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.45 E-value=0.14 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356799999999999999999987654
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.45 E-value=0.3 Score=47.64 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
....|.|.|+.|+||||+++.+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999875
No 483
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.34 E-value=0.12 Score=58.73 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=32.2
Q ss_pred CcccchHHHHHHHHHhcCCCce-----------EEEEEcCCCCcHHHHHHHHHHhh
Q 003317 154 PTVGLESTLDKVWSCLGEENVG-----------IIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3467777666665544443222 58899999999999999988764
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.33 E-value=0.19 Score=52.78 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 172 ENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..-.+++|+|+.|+|||||.+.+..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 356799999999999999999988754
No 485
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.32 E-value=0.47 Score=49.41 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=33.9
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCCC
Q 003317 169 LGEENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDLK 219 (831)
Q Consensus 169 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~~ 219 (831)
+.+...+++.+.|.||+||||+|..++.... ..-..++-|+.....+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la----~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA----KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT----TSSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH----hCCCcEEEEECCCCCC
Confidence 3344578889999999999999999998875 2234566666554443
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.15 E-value=0.17 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55799999999999999999998764
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.13 E-value=0.21 Score=45.79 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 488
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.11 E-value=0.39 Score=47.79 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHhcCC-C-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 163 DKVWSCLGEE-N-VGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 163 ~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-+..++... . ...|.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455666553 2 4579999999999999999999864
No 489
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.03 E-value=0.2 Score=52.44 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 490
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.02 E-value=0.23 Score=47.65 Aligned_cols=38 Identities=21% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 161 TLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 161 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444344444455678999999999999999888653
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.97 E-value=0.21 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 174 VGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 492
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.92 E-value=0.2 Score=52.04 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 493
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.88 E-value=0.22 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.+.+|+|+.|+||||++.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987754
No 494
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.85 E-value=0.43 Score=52.36 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHhhh
Q 003317 157 GLESTLDKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNKFL 199 (831)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (831)
+-...++.+...+.+.. +.+.|.|.+|+||||++..+.....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455566666665543 4899999999999999999998875
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.83 E-value=0.21 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45799999999999999999998754
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.82 E-value=0.27 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999884
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.81 E-value=0.21 Score=47.10 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 175 GIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 498
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.81 E-value=1.6 Score=48.06 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHhhhhccCCCCCEEEEEEeCCCC-CHHHHHHH
Q 003317 165 VWSCLGE-ENVGIIGLYGMGGVGKTTLLTQINNKFLDSRKDDFDVVIWVVVSKDL-KIERIQDD 226 (831)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~ 226 (831)
+++.|.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~------~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS------DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS------SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc------CCCEEEEEEecccHHHHHHHHHH
Confidence 5566654 356788999999999999999998864 23578888887763 33344443
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.68 E-value=0.36 Score=45.36 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHh
Q 003317 163 DKVWSCLGEENVGIIGLYGMGGVGKTTLLTQINNK 197 (831)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (831)
.++.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 44456678899999999999999998854
No 500
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.65 E-value=0.22 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 003317 173 NVGIIGLYGMGGVGKTTLLTQINNKF 198 (831)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (831)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 55799999999999999999998754
Done!