BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003318
(830 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297737338|emb|CBI26539.3| unnamed protein product [Vitis vinifera]
Length = 868
Score = 1279 bits (3310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/801 (78%), Positives = 695/801 (86%), Gaps = 18/801 (2%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 68 VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 127
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 128 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 187
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 227
L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEEAN+LRVMLLGMVDD
Sbjct: 188 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 247
Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
PRVVLIKLADRLHNMRTIYALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 248 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 307
Query: 288 LQ------MRADLASMWSPRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLS 339
LQ MRADLASMWSP NR G RR SSP PL+E+ A D E D V S
Sbjct: 308 LQPQTFLQMRADLASMWSPSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTS 367
Query: 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 399
MKDLLEAV+PFDIL DRRKR FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+E
Sbjct: 368 MKDLLEAVLPFDILLDRRKRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERE 427
Query: 400 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 459
LLISTSY+PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA
Sbjct: 428 LLISTSYVPGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPA 487
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
+QCCY+LL I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE
Sbjct: 488 VQCCYNLLSIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHE 547
Query: 520 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMG 579
YAEHGLAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK G
Sbjct: 548 YAEHGLAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAG 607
Query: 580 HPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYK 639
HPV+RVEGS+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYK
Sbjct: 608 HPVLRVEGSHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYK 667
Query: 640 KASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAV 699
K SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAV
Sbjct: 668 KVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAV 727
Query: 700 VSAVFEGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA 751
VSA+FEGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA
Sbjct: 728 VSAIFEGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEA 787
Query: 752 SLRQ--SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 809
+RQ +K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLV
Sbjct: 788 GMRQTKTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLV 847
Query: 810 NGQLVLPNTELKDGDIVEVRV 830
NGQ VLPNT+LKDGD+VEVR+
Sbjct: 848 NGQYVLPNTQLKDGDVVEVRM 868
>gi|255557973|ref|XP_002520015.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
gi|223540779|gb|EEF42339.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
Length = 806
Score = 1250 bits (3235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/857 (74%), Positives = 695/857 (81%), Gaps = 82/857 (9%)
Query: 4 LAQKNSPF--PIFFCK--FRRN------RPKFSCLLDH-----------------ANVIA 36
QK+SPF FC FR N KF CLLD N+IA
Sbjct: 2 FTQKSSPFLHKFHFCPYYFRFNTINTNHSYKFRCLLDQIPPKFALSSSLSSVFTTGNIIA 61
Query: 37 AAAAAGK---AHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDV 93
AAAAA HGAVTSAIT VAVTAVAIASGACLSTKVDFLWPK+ EQPG F++DGVDV
Sbjct: 62 AAAAASGSASVHGAVTSAITQVAVTAVAIASGACLSTKVDFLWPKVVEQPGCFVLDGVDV 121
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
TG IF+D +VQKAIAFAKRAHHGQFRKTG+PYL+HCIHTGRILAML+PS+GKRAVDTVV
Sbjct: 122 TGCTIFSDGKVQKAIAFAKRAHHGQFRKTGEPYLSHCIHTGRILAMLVPSAGKRAVDTVV 181
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
AGILHDVVDD ESL SIEEEFG++VAKLVAGVSRLSYINQLLRRHRR+ VNQ +LG EE
Sbjct: 182 AGILHDVVDDTQESLQSIEEEFGEDVAKLVAGVSRLSYINQLLRRHRRVTVNQSSLGQEE 241
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
AN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP KA+AVAQETL IWCSLASRLGL
Sbjct: 242 ANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPLKAQAVAQETLHIWCSLASRLGL 301
Query: 274 WALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 333
WALKAELEDLCFAV
Sbjct: 302 WALKAELEDLCFAV---------------------------------------------- 315
Query: 334 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACE 393
++DLLEAVVPFDIL DR+K T FL+ L K+S+AQ++ KVVQDAGIAL SL+ACE
Sbjct: 316 ------LQDLLEAVVPFDILLDRKKGTIFLNSLRKTSDAQRRPKVVQDAGIALASLIACE 369
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
EALE+ELLISTSY+PGMEVTLSSRLKSLYS+++KM+RKDVGI KVYDARALRVVVGDKNG
Sbjct: 370 EALERELLISTSYVPGMEVTLSSRLKSLYSMYTKMKRKDVGIDKVYDARALRVVVGDKNG 429
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
LHGPAIQCCYSLLDIVHRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD ++LEVQIR
Sbjct: 430 ALHGPAIQCCYSLLDIVHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNASLEVQIR 489
Query: 514 TQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKY 573
TQKMHEYAEHGLAAHWLYKETGNKL SISSMDES+ EASS LSKD +DHN + D FQKY
Sbjct: 490 TQKMHEYAEHGLAAHWLYKETGNKLPSISSMDESETEASSCLSKDFEDHNSIGEDQFQKY 549
Query: 574 SSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEA 633
SLK+GHPV+RV+GS+LLAAVIIRV+K GRELLVAV FGLAASE VADRR SF K WEA
Sbjct: 550 RSLKVGHPVLRVQGSHLLAAVIIRVDKDGRELLVAVGFGLAASEAVADRRSSFPRKRWEA 609
Query: 634 YARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEE 693
YARLYKK SDEWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQF RLLPTFIQ+ LTE+EE
Sbjct: 610 YARLYKKVSDEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFERLLPTFIQVIDLTEQEE 669
Query: 694 SEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 753
SEYWAVVSAVFEGKPVDSV SR + DS A ++A INNKVRLLRTMLRWEEQLR+EASL
Sbjct: 670 SEYWAVVSAVFEGKPVDSVASRPNLDSAASNPIDAGINNKVRLLRTMLRWEEQLRTEASL 729
Query: 754 RQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQL 813
Q K K++ DS++ EVVI+CWP+GEIMRLR+GSTAADAA +VGLEGKLVLVNGQL
Sbjct: 730 GQPKYDMKSHYTADSIILSEVVIICWPHGEIMRLRTGSTAADAARRVGLEGKLVLVNGQL 789
Query: 814 VLPNTELKDGDIVEVRV 830
VLP+TEL DGD+VEVRV
Sbjct: 790 VLPSTELSDGDVVEVRV 806
>gi|357481159|ref|XP_003610865.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355512200|gb|AES93823.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 889
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/873 (70%), Positives = 692/873 (79%), Gaps = 48/873 (5%)
Query: 4 LAQKNSP----FPIFFCKFRRNRPKFSCLLDH------ANVIAAAAAAGKAHGAVTSAIT 53
L Q +SP F + KF+ +R +F CLL ANVIAAAA A HGAV SAI
Sbjct: 19 LHQNSSPLLRRFRFRYVKFKPHRSRFRCLLPQIAVQSSANVIAAAAKAASVHGAVYSAIN 78
Query: 54 HVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKR 113
HVAVTAVAIASGACLSTKVDFLWPK +EQPGT + DGVDVTGYPIF D +VQKAIAFA +
Sbjct: 79 HVAVTAVAIASGACLSTKVDFLWPKPDEQPGTIMQDGVDVTGYPIFTDAKVQKAIAFATK 138
Query: 114 AHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
AH GQ RKTGDPYL HCIHTGRILA L+PSSGKRAV+T+VAGILHDVVDD C+SL IE
Sbjct: 139 AHLGQIRKTGDPYLAHCIHTGRILAALVPSSGKRAVETIVAGILHDVVDDTCQSLQDIEA 198
Query: 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLI 233
EFGD+VA+LVAGVSRLSYINQLLRRHRR+NVNQG LG EEA++LR MLLGM+DDPRVVLI
Sbjct: 199 EFGDDVAELVAGVSRLSYINQLLRRHRRVNVNQGVLGQEEASNLRGMLLGMIDDPRVVLI 258
Query: 234 KLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ---- 289
KLADRLHNMRTIYALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAVLQ
Sbjct: 259 KLADRLHNMRTIYALPMHKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQPQIF 318
Query: 290 --MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASD--DESFTTFDEHVLSMKDLLE 345
MRADLASMWSP R+G S R+ + PL E++++ ++S F+E + SMKDLLE
Sbjct: 319 QSMRADLASMWSPSARIGSSGRLYLKGNLIPLAEKSSTSFYNKSL-AFNEGLCSMKDLLE 377
Query: 346 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 405
AVVPFD+L DRRKR FL+ +A + E K KVVQDAG+AL SLV CEEALE+EL+IS S
Sbjct: 378 AVVPFDVLLDRRKRANFLYSIANNVETCTKPKVVQDAGLALASLVICEEALERELIISAS 437
Query: 406 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
Y+PGMEVTLSSRLKSLYSI+SKM+RKD I KVYDARALRVVVGDKNG LHGPA+QCCYS
Sbjct: 438 YVPGMEVTLSSRLKSLYSIYSKMKRKDTSIDKVYDARALRVVVGDKNGALHGPAVQCCYS 497
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
LLDIVHRLW PIDGEFDDYI+NPKPSGYQSLHTAV+GPD S LEVQIRTQ+MHEYAEHGL
Sbjct: 498 LLDIVHRLWTPIDGEFDDYIINPKPSGYQSLHTAVEGPDNSPLEVQIRTQRMHEYAEHGL 557
Query: 526 AAHWLYKETGNKLQSISSMDESDIEASSSL----------------------------SK 557
AAHWLYKETGN S+ MD + +ASSS+ SK
Sbjct: 558 AAHWLYKETGNPFSSVDRMDTPETDASSSIDKMDAPETEASSSIDRMDTPETEASSYFSK 617
Query: 558 DTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASE 617
DT+ N D L K SLK GHPV+RVEGS+LLAAVII VE RELLVAVSF LAAS+
Sbjct: 618 DTEAENSSDI-LLSKNKSLKAGHPVLRVEGSHLLAAVIISVENEARELLVAVSFQLAASD 676
Query: 618 VVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 677
VADRR FQ K WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYHKQDQFGR
Sbjct: 677 AVADRRSFFQDKRWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 736
Query: 678 LLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLL 737
LLPTF+Q+ + TE+EESEYW VVSAVFEGK VD + S+ D V TSM+ASINNKV LL
Sbjct: 737 LLPTFVQVINFTEQEESEYWDVVSAVFEGKQVDCIASQSKLDLVPSTSMDASINNKVHLL 796
Query: 738 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 797
RTML WEEQLRSE ++ Q+K K +G + GEVV++CWPNGEIMRL++GS+A DAA
Sbjct: 797 RTMLSWEEQLRSEVNINQTKHDAKFDGPRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAA 856
Query: 798 MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
+ GLEGKLVL+NG L LPNT+LKDGD++EVR+
Sbjct: 857 QRTGLEGKLVLINGHLALPNTKLKDGDVLEVRI 889
>gi|225454821|ref|XP_002274363.1| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]
Length = 816
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/793 (75%), Positives = 663/793 (83%), Gaps = 62/793 (7%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 76 VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 135
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 136 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 195
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 227
L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEEAN+LRVMLLGMVDD
Sbjct: 196 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 255
Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
PRVVLIKLADRLHNMRTIYALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 256 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 315
Query: 288 LQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV 347
LQ DLLEAV
Sbjct: 316 LQ----------------------------------------------------DLLEAV 323
Query: 348 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 407
+PFDIL DRRKR FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+
Sbjct: 324 LPFDILLDRRKRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERELLISTSYV 383
Query: 408 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL
Sbjct: 384 PGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLL 443
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAA
Sbjct: 444 SIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAA 503
Query: 528 HWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEG 587
HWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+RVEG
Sbjct: 504 HWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEG 563
Query: 588 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWC 647
S+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYKK SDEWW
Sbjct: 564 SHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWF 623
Query: 648 QPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK 707
+PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+FEGK
Sbjct: 624 EPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGK 683
Query: 708 PVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SK 757
+ S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ +K
Sbjct: 684 QIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTK 743
Query: 758 LGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPN 817
+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPN
Sbjct: 744 VGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPN 803
Query: 818 TELKDGDIVEVRV 830
T+LKDGD+VEVR+
Sbjct: 804 TQLKDGDVVEVRM 816
>gi|449483240|ref|XP_004156531.1| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]
Length = 875
Score = 1204 bits (3115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/795 (74%), Positives = 670/795 (84%), Gaps = 12/795 (1%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPK+EEQPG+ ++DGVDVTGY IF D +V
Sbjct: 84 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKVEEQPGSLVLDGVDVTGYLIFEDTKV 143
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
QKAI FAK+AHHGQ RKTGDPYLTHCIHTG+ILA L+P +G RAVDTVVAGILHD+VDD
Sbjct: 144 QKAIEFAKKAHHGQLRKTGDPYLTHCIHTGKILAALVPPTGNRAVDTVVAGILHDIVDDT 203
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM 224
C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N G+LGHEEAN LRVMLLGM
Sbjct: 204 CQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNPGSLGHEEANKLRVMLLGM 263
Query: 225 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 284
VDDPRVVLIKLADRLHNMRTIYALP KA+AVAQETL+IWCSLASRLGLWALKAELEDLC
Sbjct: 264 VDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLVIWCSLASRLGLWALKAELEDLC 323
Query: 285 FAVLQ------MRADLASMWSPRNRVGYSRRITTIVSSPPLD--ERTASDDESFTTFDEH 336
FAVLQ +R++LASMW P +R G SR+I+ P LD T + T DE
Sbjct: 324 FAVLQPQMFLKLRSELASMWMPSSRAGSSRKISARADFPSLDSSSSTCCHNMPITVTDE- 382
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 396
+MK+LLEAVVPFDIL+DRRKRT +L++L KS +A + KV+Q+A AL +LV CEEAL
Sbjct: 383 ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSIDACIQPKVMQEARNALAALVVCEEAL 442
Query: 397 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
E+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKDV I+KVYD RALRVVVGDKNGTLH
Sbjct: 443 EQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKVYDTRALRVVVGDKNGTLH 502
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
GPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPSGYQSLHTAV GPD S LEVQIRTQ+
Sbjct: 503 GPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPSGYQSLHTAVLGPDNSPLEVQIRTQR 562
Query: 517 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 576
MHEYAEHGLAAHWLYKE GNK S+SS D+S+ + S S DT+ N ++ D KY L
Sbjct: 563 MHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDVSRYFS-DTEFQNSIEDD-SHKYGFL 620
Query: 577 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 636
K GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSFGLAASE VADR SFQIK WEAYAR
Sbjct: 621 KAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSFGLAASEAVADRSSSFQIKRWEAYAR 680
Query: 637 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 696
LYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQ+ TE+EE EY
Sbjct: 681 LYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQVIDFTEQEEFEY 740
Query: 697 WAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA-SLRQ 755
WA++SA+ EGK +++ SR SS+SVA S +ASIN KVR LRTML+WEEQL EA + RQ
Sbjct: 741 WAIMSAISEGKQIETASSRTSSNSVASISTDASINTKVRFLRTMLQWEEQLLCEAGNFRQ 800
Query: 756 SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVL 815
+K GG+ S+ EVVIVCWP GEIMRLR+GSTAADAA +VG EG+LVL+NG VL
Sbjct: 801 AKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTGSTAADAARRVGSEGRLVLINGLPVL 860
Query: 816 PNTELKDGDIVEVRV 830
PNTELKDGD+VEVRV
Sbjct: 861 PNTELKDGDVVEVRV 875
>gi|356495744|ref|XP_003516733.1| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]
Length = 782
Score = 1184 bits (3064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/835 (71%), Positives = 660/835 (79%), Gaps = 65/835 (7%)
Query: 5 AQKNSPFPIFFCKFRRNRPKFSCLLDHA---------NVIAAAAAAGKAHGAVTSAITHV 55
AQ NSPF F F+ +R +F CLLD NVIAAAA A H AV+SAIT V
Sbjct: 4 AQNNSPFLRRFRSFKPHRSRFRCLLDQISAPTLLTSDNVIAAAAKAASVHSAVSSAITQV 63
Query: 56 AVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAH 115
AVTAVAIASGACLSTK DFLWPKL+EQ GT + DGVDVTGYPIFND +VQKAIAFA++AH
Sbjct: 64 AVTAVAIASGACLSTKFDFLWPKLQEQSGTVMQDGVDVTGYPIFNDAKVQKAIAFARKAH 123
Query: 116 HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEF 175
GQ RKTGDPYLTHCIHTGRILA L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EF
Sbjct: 124 RGQMRKTGDPYLTHCIHTGRILAALVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEF 183
Query: 176 GDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
GD+V KLVA VSRLSYINQLLRRHRR++VNQG LG EEA++LRVMLLGMVDDPRVVLIKL
Sbjct: 184 GDDVVKLVASVSRLSYINQLLRRHRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKL 243
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLA 295
ADRLHNMRTIYALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAV
Sbjct: 244 ADRLHNMRTIYALPLQKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAV-------- 295
Query: 296 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 355
++DLLEAVVPFDIL D
Sbjct: 296 --------------------------------------------LQDLLEAVVPFDILLD 311
Query: 356 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 415
RRKR +L + + E K KVVQDAG+AL S+V CEEALE+E++IS SY+PGME+TLS
Sbjct: 312 RRKRANYLSSIGNNLETCTKPKVVQDAGLALASMVICEEALEREMIISASYVPGMEITLS 371
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 475
SRLKSLYS++SKM+RKD+ I KVYDARALRVVVGDKNGTLHGPA+QCCYSLLDIVHRLW
Sbjct: 372 SRLKSLYSLYSKMKRKDISIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWT 431
Query: 476 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
PIDGEFDDYI+NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AE GLAAHWLYKETG
Sbjct: 432 PIDGEFDDYIINPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEQGLAAHWLYKETG 491
Query: 536 NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVI 595
N SI SMDE + EASS SKD ++ N D L KY SLK GHPV+RVEGS+LLAA+I
Sbjct: 492 NPFLSIDSMDEPETEASSYFSKDLEEGNSSDI-LLSKYKSLKAGHPVLRVEGSHLLAAII 550
Query: 596 IRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWC 655
I VE RELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW
Sbjct: 551 ISVENDERELLVAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWF 609
Query: 656 TCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSR 715
TCLEKYTLCRDGMYHKQDQFGRLLPTFIQ+ + TE+EESEYWAVVSAVFEG+ VD + SR
Sbjct: 610 TCLEKYTLCRDGMYHKQDQFGRLLPTFIQVINFTEQEESEYWAVVSAVFEGRQVDWITSR 669
Query: 716 RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVV 775
D VA TS+EA INNKV LLRTML WEEQLRSE S Q+K K S+ GEVV
Sbjct: 670 SKFDLVASTSVEAGINNKVNLLRTMLSWEEQLRSEVSFMQAKHDAKLYDLHGSL--GEVV 727
Query: 776 IVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
I+CWP+GEI+RL++GSTA DAA +VGLEGKLVL+NGQLVLPNT+L+DGD+VEVR+
Sbjct: 728 IICWPHGEILRLKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLRDGDVVEVRI 782
>gi|356538795|ref|XP_003537886.1| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]
Length = 793
Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/835 (70%), Positives = 663/835 (79%), Gaps = 66/835 (7%)
Query: 5 AQKNSPFPIFFCKFRRNRPKFSCLLDHA---------NVIAAAAAAGKAHGAVTSAITHV 55
AQ SPF F F+ R +F CLLD NVIAAA AA AV+SAIT V
Sbjct: 16 AQNKSPFLRRFRSFKPYRSRFRCLLDQIAAPTLLTSDNVIAAAKAASAHS-AVSSAITQV 74
Query: 56 AVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAH 115
AVTA AIASGACLSTKVDFLWPKL+EQPGT ++DGVDVTGYPIF+D +VQKAIAFA++AH
Sbjct: 75 AVTAFAIASGACLSTKVDFLWPKLQEQPGTVMLDGVDVTGYPIFDDAKVQKAIAFARKAH 134
Query: 116 HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEF 175
GQ RKTGDPYLTHCIHTGRILA L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EF
Sbjct: 135 RGQMRKTGDPYLTHCIHTGRILAALVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEF 194
Query: 176 GDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
GD+V KLVA VSRLSYINQLLRR+RR++VNQG LG EEA++LRVMLLGMVDDPRVVLIKL
Sbjct: 195 GDDVVKLVASVSRLSYINQLLRRNRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKL 254
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLA 295
ADRLHNMRTIYALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAV
Sbjct: 255 ADRLHNMRTIYALPLQKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAV-------- 306
Query: 296 SMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSD 355
++DLLEAVVPFDIL D
Sbjct: 307 --------------------------------------------LQDLLEAVVPFDILLD 322
Query: 356 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 415
RRKR +L + + E KK KVVQ+AG+AL ++V CEEALE+E++IS+SY+PGME+TLS
Sbjct: 323 RRKRANYLSSIGNNLETCKKPKVVQEAGLALATMVICEEALEREMIISSSYVPGMEITLS 382
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 475
SRLKSLYS++SKM+RKDV I KVYDARALRVVVGDKNGTLHGPA++CCYSLLDIVHRLW
Sbjct: 383 SRLKSLYSLYSKMKRKDVSIDKVYDARALRVVVGDKNGTLHGPAVRCCYSLLDIVHRLWT 442
Query: 476 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
PIDGEFDDYI+NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AEHGLAAHWLYKETG
Sbjct: 443 PIDGEFDDYIINPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEHGLAAHWLYKETG 502
Query: 536 NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVI 595
N SI SMDE + EASS SK+ ++ N D L KY SLK GHPV+RVEGS+LLAAVI
Sbjct: 503 NPFLSIDSMDEPETEASSYFSKNLEEGNSSDI-LSSKYKSLKAGHPVLRVEGSHLLAAVI 561
Query: 596 IRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWC 655
I VE RELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW
Sbjct: 562 ISVENDERELLVAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWF 620
Query: 656 TCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSR 715
TCLEKYTLCRDGMYHKQDQFGRLLPTFIQ+ + TE+E+SEYWAVVSAVFEG+ VD + SR
Sbjct: 621 TCLEKYTLCRDGMYHKQDQFGRLLPTFIQVINFTEQEKSEYWAVVSAVFEGRQVDWITSR 680
Query: 716 RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVV 775
D VA TS+EA I+NKV LLRTML WEEQLRSE + +Q+K K S+ GEVV
Sbjct: 681 SKFDLVASTSVEAGIDNKVNLLRTMLSWEEQLRSEVNFKQTKHDVKLYDLHGSL--GEVV 738
Query: 776 IVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
I+CWP+GEI+RL++GSTA DAA +VGLEGKLVL+NGQLVLPNT+LKDGD+VEVR+
Sbjct: 739 IICWPHGEILRLKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLKDGDVVEVRI 793
>gi|449439043|ref|XP_004137297.1| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]
Length = 706
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/693 (73%), Positives = 577/693 (83%), Gaps = 12/693 (1%)
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
+AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N
Sbjct: 17 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 76
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
G+LGHEEAN LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVAQETL+IWCS
Sbjct: 77 GSLGHEEANKLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLVIWCS 136
Query: 267 LASRLGLWALKAELEDLCFAVLQ------MRADLASMWSPRNRVGYSRRITTIVSSPPLD 320
LASRLGLWALKAELEDLCFAVLQ +R++LASMW P +R G SR+I+ P LD
Sbjct: 137 LASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWMPSSRAGSSRKISARADFPSLD 196
Query: 321 ER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKV 378
T + T DE +MK+LLEAVVPFDIL+DRRKRT +L++L KS +A + KV
Sbjct: 197 SSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSIDACIQPKV 255
Query: 379 VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 438
+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKDV I+KV
Sbjct: 256 MQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKV 315
Query: 439 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 498
YD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPSGYQSLHT
Sbjct: 316 YDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPSGYQSLHT 375
Query: 499 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKD 558
AV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK S+SS D+S+ + S S D
Sbjct: 376 AVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDVSRYFS-D 434
Query: 559 TDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEV 618
T+ N ++ D KY LK GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSFGLAASE
Sbjct: 435 TEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSFGLAASEA 493
Query: 619 VADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 678
VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQFGRL
Sbjct: 494 VADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 553
Query: 679 LPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLR 738
LPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR SS+SVA S +ASIN KVR LR
Sbjct: 554 LPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTSSNSVASISTDASINTKVRFLR 613
Query: 739 TMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 797
TML+WEEQL EA + RQ+K GG+ S+ EVVIVCWP GEIMRLR+GSTAADAA
Sbjct: 614 TMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTGSTAADAA 673
Query: 798 MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
+VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 674 RRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 706
>gi|357137144|ref|XP_003570161.1| PREDICTED: uncharacterized protein LOC100839209 [Brachypodium
distachyon]
Length = 812
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/792 (63%), Positives = 600/792 (75%), Gaps = 69/792 (8%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
H AV S I +AV+AVAIASGACLSTKVDFLWP++E+ P T + +GV+VTGY IF D +V
Sbjct: 82 HAAVASTIAQLAVSAVAIASGACLSTKVDFLWPRIEQLPDTLVFEGVEVTGYQIFEDPKV 141
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164
QKAI FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD
Sbjct: 142 QKAIVFASTAHFGQFRRTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDT 201
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM 224
ESL SIEE+FG++VA LV+ VS+LSYINQLLRRHR+ N + TL EEAN+LR MLLGM
Sbjct: 202 TESLKSIEEQFGNDVASLVSCVSKLSYINQLLRRHRQKNTDGSTLTSEEANNLRAMLLGM 261
Query: 225 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 284
VDDPRVVLIKL+DRLHNMRTIYALP KA AVAQETL +WCSLASRLG+WALKAELEDLC
Sbjct: 262 VDDPRVVLIKLSDRLHNMRTIYALPIPKAEAVAQETLAVWCSLASRLGVWALKAELEDLC 321
Query: 285 FAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLL 344
FAVLQ DLL
Sbjct: 322 FAVLQ----------------------------------------------------DLL 329
Query: 345 EAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIST 404
+AV+PFD+ DR +R+ FL++L SSEA KK K+V DA +ALTSL ACEE L++ELLI+T
Sbjct: 330 QAVLPFDLFLDRGRRSDFLNNLQSSSEASKKPKIVDDAAVALTSLAACEEELQQELLITT 389
Query: 405 SYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCY 464
SYIPGMEVTLSSRLKSLYSI+ KM RK VGI +VYDARALRV+VGDKNG LHGPA++ CY
Sbjct: 390 SYIPGMEVTLSSRLKSLYSIYCKMERKHVGIRQVYDARALRVIVGDKNGALHGPAVRSCY 449
Query: 465 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 524
S+LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+G
Sbjct: 450 SILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMHEYAEYG 509
Query: 525 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIR 584
LAAHWLYKE+ K+ + S M +++S S ++D + + + S+K+GHPV+R
Sbjct: 510 LAAHWLYKES--KVDTRSGMSNKISQSTSYASSSSEDESYVKDSI----PSIKVGHPVLR 563
Query: 585 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 644
++G++LLAAVI+ ++KGG+ELLVAV F ASE VA+RR SFQ++ WEAYARL+KK +++
Sbjct: 564 IDGNHLLAAVIVSIDKGGKELLVAVHFTHEASEDVAERRSSFQLERWEAYARLHKKVTEK 623
Query: 645 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 704
WWC PGHGDW T LEKYTLCRDG++HKQDQFGRLLPTFIQI LTEEEE EYW VVSAVF
Sbjct: 624 WWCAPGHGDWSTNLEKYTLCRDGIFHKQDQFGRLLPTFIQIIDLTEEEEDEYWMVVSAVF 683
Query: 705 EGKPVDSVVSRRSSDSVAPTSMEAS-------INNKVRLLRTMLRWEEQLRSEASLRQSK 757
EGK ++ S SS++ PTS S INNKV LLRTML+WEEQ+R AS +
Sbjct: 684 EGKETSTLTS-ESSNADRPTSYPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASWAERS 742
Query: 758 LGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPN 817
LG + P + EV I+CWP G+IMR+ +GSTAADA ++G++GKL+ VNGQLV P
Sbjct: 743 LGARTLTEP---ILHEVAIICWPYGKIMRMSTGSTAADAGRRMGVDGKLLWVNGQLVQPQ 799
Query: 818 TELKDGDIVEVR 829
TELKDGDIVEVR
Sbjct: 800 TELKDGDIVEVR 811
>gi|242066290|ref|XP_002454434.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
gi|241934265|gb|EES07410.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
Length = 878
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/796 (65%), Positives = 628/796 (78%), Gaps = 20/796 (2%)
Query: 50 SAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIA 109
S + VAVTAVAIASGACLSTKVDFLWP++E+ P T I +GV+VTGY IF D +VQKAI
Sbjct: 88 STLAQVAVTAVAIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYQIFEDPKVQKAIE 147
Query: 110 FAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLG 169
FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RAV+TVVAGILHDVV D ESL
Sbjct: 148 FASTAHLGQFRRTGDPYVTHCIHTGKILAALVPSTGERAVNTVVAGILHDVVCDTSESLK 207
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 229
SIEE+FGD+VA LV+GVS+LSYINQLLRRHR+ N TL EEAN+LRVMLLGMVDDPR
Sbjct: 208 SIEEQFGDDVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEANNLRVMLLGMVDDPR 267
Query: 230 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
VVLIKLADRLHNMRTIYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 268 VVLIKLADRLHNMRTIYALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQ 327
Query: 290 ------MRADLASMWSPRNRVGYSRR--ITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
+R++L MWS + RR I + + D S ++ F++ ++ +MK
Sbjct: 328 PQVFKKIRSELTLMWSRTGKSKNMRRSSIRNELLASMKDGHMTSINDLFSSCNQEKPNMK 387
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSS-EAQKKAKVVQDAGIALTSLVACEEALEKEL 400
DLL+AV+PFDI DR++R+ FL +L +S E+ K+V DA +AL SL +CEE LE+EL
Sbjct: 388 DLLQAVLPFDIFLDRKRRSYFLRNLNNNSGESIPNPKIVDDAAVALASLASCEEELEREL 447
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
LISTSYIPGMEVTLSSRLKSLYSI+ KM+RKD G+ +VYDARALRV+VGDKNG +HGPA+
Sbjct: 448 LISTSYIPGMEVTLSSRLKSLYSIYCKMKRKDKGLRQVYDARALRVIVGDKNGAMHGPAV 507
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CYS+LDIVHRLW PIDGEFDDYI+NPK SGY+SLHTAVQ D S LEVQIRTQ+MHEY
Sbjct: 508 RSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYRSLHTAVQASDSSPLEVQIRTQRMHEY 567
Query: 521 AEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGH 580
AEHGLAAHWLYKE+ K++ SSM + +++S S ++D + + D+ KYSS+K+GH
Sbjct: 568 AEHGLAAHWLYKES--KVEYRSSMSKRIRQSTSYSSSSSEDESSIQDDIPSKYSSIKVGH 625
Query: 581 PVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKK 640
PV+R+EG +LLAAVI+ ++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYARL+KK
Sbjct: 626 PVLRIEGCDLLAAVIVSIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYARLHKK 685
Query: 641 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 700
S++WWC PGHGDW T LE+YTLC+DG++HKQDQFGRLLPTF+QI LTEEEE EYW VV
Sbjct: 686 VSEKWWCAPGHGDWSTNLERYTLCQDGIFHKQDQFGRLLPTFLQIIDLTEEEEEEYWMVV 745
Query: 701 SAVFEGKPVDSVVSRRS-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRSEASLR 754
SA+FEGK S+ S S +D + ++ INNKV LLRTML+WEEQ+R ASL
Sbjct: 746 SAIFEGKETCSLPSESSYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLA 805
Query: 755 QSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 814
+ LG P + EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ VNGQ+V
Sbjct: 806 EKSLGVNTCTKP---ILREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWVNGQVV 862
Query: 815 LPNTELKDGDIVEVRV 830
LP TELKDGDIVEVRV
Sbjct: 863 LPQTELKDGDIVEVRV 878
>gi|413923562|gb|AFW63494.1| hypothetical protein ZEAMMB73_341215 [Zea mays]
Length = 877
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/801 (64%), Positives = 627/801 (78%), Gaps = 26/801 (3%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V S + VAVTAVAIASGACLSTKVDFLWP++++ P T I +GV+VTGY IF D +VQKA
Sbjct: 85 VASTLAQVAVTAVAIASGACLSTKVDFLWPRIDQLPDTLIFEGVEVTGYQIFEDPKVQKA 144
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
I FA AH GQFR+TGDPY+THCIHTG+ILA L+PS+G+RAV+T+VAGILHDVV D ES
Sbjct: 145 IEFASTAHLGQFRRTGDPYITHCIHTGKILAALVPSTGERAVNTIVAGILHDVVCDTSES 204
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 227
L SIEE+FG +VA LV+GVS+LSYINQLLRRHR+ N TL EEAN+LRVMLLGMVDD
Sbjct: 205 LKSIEEQFGADVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEANNLRVMLLGMVDD 264
Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
PRVVLIKLADRLHNMRTIYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAV
Sbjct: 265 PRVVLIKLADRLHNMRTIYALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAV 324
Query: 288 LQ------MRADLASMWSPRNRVGYSRR-----ITTIVSSPPLDERTASDDESFTTFDEH 336
LQ ++++L MW NR G S+ I + + D S ++ F++ ++
Sbjct: 325 LQPQIFKKIQSELTLMW---NRTGKSKNMRRSSIRNELLASMKDGNMVSINDLFSSCNQE 381
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEA 395
+MKDLL+AV+PFDI DR++R+ FL +L + S E+ K+V DA +AL SL +CEE
Sbjct: 382 RPNMKDLLQAVLPFDIFLDRKRRSYFLSNLNSNSGESIPNPKIVDDAAVALASLASCEEE 441
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
LE+ELLISTSYIPGMEVTLSSRLKSLYSI+ KM+RK+VGI +VYDARALRV+VGDKNG +
Sbjct: 442 LERELLISTSYIPGMEVTLSSRLKSLYSIYCKMKRKEVGIRQVYDARALRVIVGDKNGAM 501
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
HG A++ CYS+LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ
Sbjct: 502 HGSAVRSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQ 561
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 575
+MHEYAEHGLAAHWLYKE+ K++ SSM + +++S S ++D + + D+ KYSS
Sbjct: 562 RMHEYAEHGLAAHWLYKES--KVEYRSSMSKRIRQSTSYSSSSSEDESSVQDDIPSKYSS 619
Query: 576 LKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYA 635
+K+GHPV+R+EGS+LLAAV++ ++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYA
Sbjct: 620 MKVGHPVLRIEGSHLLAAVVVSIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYA 679
Query: 636 RLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESE 695
RL+KK S++WWC PGHGDW T LE+YTLC+DG++HKQDQFGRLLPTFIQI L EEEE E
Sbjct: 680 RLHKKVSEKWWCAPGHGDWSTNLERYTLCQDGIFHKQDQFGRLLPTFIQIIDLAEEEEEE 739
Query: 696 YWAVVSAVFEGKPVDSVVSRRS-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRS 749
YW VVSA+FEGK S+ S S +D + ++ INNKV LLRTML+WEEQ+R
Sbjct: 740 YWMVVSAIFEGKETCSLPSESSYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRR 799
Query: 750 EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 809
ASL + L + EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ V
Sbjct: 800 GASLAEKSLSASIC---TKAILREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWV 856
Query: 810 NGQLVLPNTELKDGDIVEVRV 830
NGQLVLP TELKDGDIVEVRV
Sbjct: 857 NGQLVLPQTELKDGDIVEVRV 877
>gi|222623497|gb|EEE57629.1| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group]
Length = 808
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/799 (61%), Positives = 597/799 (74%), Gaps = 51/799 (6%)
Query: 48 VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
V S + + VTAVAIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKA
Sbjct: 45 VASTLAQLTVTAVAIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKA 104
Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
I FA AH GQFRKTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+
Sbjct: 105 IVFASTAHIGQFRKTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAEN 164
Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 227
L SIEE+FGD+VA LV+GVS+LSYINQLLRRHR+ N TL EE
Sbjct: 165 LKSIEEQFGDDVASLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS----------- 213
Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAV
Sbjct: 214 ------------------YALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAV 255
Query: 288 LQ------MRADLASMWSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVL 338
LQ MR++L +MW+ N+ +RR ++I S P D T S + F+ ++
Sbjct: 256 LQPHVFKKMRSELTTMWNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKP 314
Query: 339 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALE 397
+MKDLL+AV+PFD+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE
Sbjct: 315 NMKDLLQAVLPFDLLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELE 374
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
+ELLISTSYIPGMEVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHG
Sbjct: 375 QELLISTSYIPGMEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHG 434
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
PA++ CYS+LDIV+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+M
Sbjct: 435 PAVKNCYSVLDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRM 494
Query: 518 HEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK 577
HEYAE+GLAAHWLYKE+ K+ S +++S S ++D N + + KYSS+K
Sbjct: 495 HEYAEYGLAAHWLYKES--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMK 552
Query: 578 MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARL 637
MGHPV+R+EGS LLAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+
Sbjct: 553 MGHPVLRIEGSQLLAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARV 612
Query: 638 YKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYW 697
YKK S++WWC PGHGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW
Sbjct: 613 YKKVSEKWWCAPGHGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYW 672
Query: 698 AVVSAVFEGK------PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA 751
VVSA+FEGK P S R +S+ + T + INNKV LLRTML+WEEQ+R A
Sbjct: 673 MVVSAIFEGKEASSLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGA 732
Query: 752 SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNG 811
SL + L P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNG
Sbjct: 733 SLVEKSLSVGTCTEP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNG 789
Query: 812 QLVLPNTELKDGDIVEVRV 830
QLVLP TELKDGDIVEVR+
Sbjct: 790 QLVLPQTELKDGDIVEVRM 808
>gi|218191410|gb|EEC73837.1| hypothetical protein OsI_08580 [Oryza sativa Indica Group]
Length = 847
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/846 (59%), Positives = 615/846 (72%), Gaps = 70/846 (8%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 37 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKGGGAGHAAVASTLAQLTVTAV 96
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 97 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 156
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 157 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 216
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLH 240
LV+GVS+LSYINQLLRRHR+ N TL EE
Sbjct: 217 SLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS------------------------ 252
Query: 241 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ------MRADL 294
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ MR++L
Sbjct: 253 -----YALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSEL 307
Query: 295 ASMWSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFD 351
+MW+ N+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD
Sbjct: 308 TTMWNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFD 366
Query: 352 ILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 410
+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGM
Sbjct: 367 LLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGM 426
Query: 411 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 470
EVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV
Sbjct: 427 EVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIV 486
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 530
+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWL
Sbjct: 487 NRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWL 546
Query: 531 YKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNL 590
YKE+ K+ S +++S S ++D + + + KYSS+KMGHPV+R+EGS L
Sbjct: 547 YKES--KVDYRSGTSNKIGQSTSYPSSSSEDESYIQDVMPSKYSSMKMGHPVLRIEGSQL 604
Query: 591 LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPG 650
LAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PG
Sbjct: 605 LAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPG 664
Query: 651 HGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK--- 707
HGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK
Sbjct: 665 HGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEAS 724
Query: 708 ---PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANG 764
P S R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L
Sbjct: 725 SLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSVGTCT 784
Query: 765 NPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGD 824
P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGD
Sbjct: 785 EP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGD 841
Query: 825 IVEVRV 830
IVEVR+
Sbjct: 842 IVEVRM 847
>gi|297599793|ref|NP_001047830.2| Os02g0699400 [Oryza sativa Japonica Group]
gi|255671187|dbj|BAF09744.2| Os02g0699400 [Oryza sativa Japonica Group]
Length = 868
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/847 (59%), Positives = 619/847 (73%), Gaps = 51/847 (6%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 37 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKSGGAGHAAVASTLAQLTVTAV 96
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 97 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 156
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 157 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 216
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQG-TLGHEEANDLRVMLLGMVDDPRVVLIKLADRL 239
LV+GVS+LSYINQ++ + ++ G ++ + +LL + VL +
Sbjct: 217 SLVSGVSKLSYINQVMHMLEKTLLSADYCAGIDKKTPVEALLL----QKKYVLFYASKYF 272
Query: 240 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ------MRAD 293
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ MR++
Sbjct: 273 S-----YALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSE 327
Query: 294 LASMWSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPF 350
L +MW+ N+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PF
Sbjct: 328 LTTMWNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPF 386
Query: 351 DILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPG 409
D+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPG
Sbjct: 387 DLLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPG 446
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
MEVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDI
Sbjct: 447 MEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDI 506
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
V+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHW
Sbjct: 507 VNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHW 566
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSN 589
LYKE+ K+ S +++S S ++D N + + KYSS+KMGHPV+R+EGS
Sbjct: 567 LYKES--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQ 624
Query: 590 LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQP 649
LLAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC P
Sbjct: 625 LLAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAP 684
Query: 650 GHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK-- 707
GHGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK
Sbjct: 685 GHGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEA 744
Query: 708 ----PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKAN 763
P S R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L
Sbjct: 745 SSLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTC 804
Query: 764 GNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDG 823
P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDG
Sbjct: 805 TEP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDG 861
Query: 824 DIVEVRV 830
DIVEVR+
Sbjct: 862 DIVEVRM 868
>gi|41052967|dbj|BAD07877.1| putative relA/spoT homologous protein RSH2 [Oryza sativa Japonica
Group]
Length = 772
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/837 (58%), Positives = 585/837 (69%), Gaps = 112/837 (13%)
Query: 20 RNRPKFSCLLDH-ANVIAAAAAA------------------GKAHGAVTSAITHVAVTAV 60
R R + C+L+H A +A A+AA G H AV S + + VTAV
Sbjct: 22 RARMRLGCVLEHVAPRLAVASAALLGAGEVIAAAAAAGKSGGAGHAAVASTLAQLTVTAV 81
Query: 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR 120
AIASGACLSTKVDFLWP++E+ P T I +GV+VTGYPIF D +VQKAI FA AH GQFR
Sbjct: 82 AIASGACLSTKVDFLWPRIEQLPDTLIFEGVEVTGYPIFEDPKVQKAIVFASTAHIGQFR 141
Query: 121 KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
KTGDPY+THCIHTG+ILA L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA
Sbjct: 142 KTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVA 201
Query: 181 KLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLH 240
LV+GVS+LSYINQLLRRHR+ N TL EE
Sbjct: 202 SLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS------------------------ 237
Query: 241 NMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSP 300
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAV
Sbjct: 238 -----YALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAV------------- 279
Query: 301 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRT 360
++DLL+AV+PFD+L DR++R+
Sbjct: 280 ---------------------------------------LQDLLQAVLPFDLLLDRKRRS 300
Query: 361 KFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 419
FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRLK
Sbjct: 301 YFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRLK 360
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
SLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PIDG
Sbjct: 361 SLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPIDG 420
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 539
EFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+
Sbjct: 421 EFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KVD 478
Query: 540 SISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVE 599
S +++S S ++D N + + KYSS+KMGHPV+R+EGS LLAAVI+ ++
Sbjct: 479 YRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSID 538
Query: 600 KGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLE 659
KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T LE
Sbjct: 539 KGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNLE 598
Query: 660 KYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSVV 713
KYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S
Sbjct: 599 KYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSNT 658
Query: 714 SRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGE 773
R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P + E
Sbjct: 659 ERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP---ILRE 715
Query: 774 VVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
V I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 716 VAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 772
>gi|302810512|ref|XP_002986947.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
gi|300145352|gb|EFJ12029.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
Length = 947
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/855 (51%), Positives = 566/855 (66%), Gaps = 71/855 (8%)
Query: 13 IFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASG------- 65
+ K R + S LLDH A+ G+ ++A VA TA A A
Sbjct: 124 VLVKKEGRRQAISSLLLDHVVRQVPLASVGQLLATGSTAFRTVAPTASAHAVALMTFAQV 183
Query: 66 ---------ACL--STKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRA 114
AC+ D K+++ + + DGVDV+ YPIF DE+VQ+A+++A+ A
Sbjct: 184 AVTAAVAYGACILPQASSDPRNGKVDDGTASLVFDGVDVSDYPIFQDEKVQRAVSYAREA 243
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ R TGDPY+THCIHT +ILA L+P G +A+DTVVAGILHDVVDD SL +
Sbjct: 244 HAGQMRMTGDPYITHCIHTAKILAALVPQVGTKAIDTVVAGILHDVVDDTTRSLHDLRTS 303
Query: 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ-----GTLGHEEANDLRVMLLGMVDDPR 229
FGD VA LVAGVSRLSYINQLLRRHRR ++ L EE + LR+MLLGMV+DPR
Sbjct: 304 FGDNVADLVAGVSRLSYINQLLRRHRRKTAHEREEFGNGLTSEEVDSLRIMLLGMVNDPR 363
Query: 230 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
VVL+KLADRLHNMRTIYALP KARAVAQETL +WCSLASRLG+W +KAELEDLCFAVL+
Sbjct: 364 VVLVKLADRLHNMRTIYALPAPKARAVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLE 423
Query: 290 ------MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKD 342
+R+ LA+MWS V + R++T L T S +DES ++ LSMKD
Sbjct: 424 PQTFRELRSGLAAMWSVDEEVRHYRKMTKREKRRALIYGTESTEDESNEEIED--LSMKD 481
Query: 343 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI 402
LL+AV+PFD+LS R+ R K L S K+KV++D +AL +L CEEAL+KE+ I
Sbjct: 482 LLDAVIPFDLLSGRKNRGKQKFGLPPS---LSKSKVIEDTKVALAALSLCEEALDKEVAI 538
Query: 403 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 462
ST YIPG EVTLS RLKSLYS SKM+RK V + ++YDARALRVVVGD G LH AI+
Sbjct: 539 STPYIPGTEVTLSGRLKSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKG 598
Query: 463 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 522
CYSLLD+VHRLW+PI GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE
Sbjct: 599 CYSLLDVVHRLWMPISGEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAE 658
Query: 523 HGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS----LKM 578
G AAHWLYKE+G + + +A + +D+ DTDL S+ +++
Sbjct: 659 SGNAAHWLYKESGAPVMT---------QALPTNGRDS------DTDLTPSSSTPSKQVQL 703
Query: 579 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIK-CWEAYARL 637
+P +R+EG +L AAV+IRV+ G+ELLVAVS G A +V+ SF K W+ +A +
Sbjct: 704 RYPALRIEGGSLRAAVVIRVDHDGKELLVAVSSGEA---IVSG--ASFDDKDRWKIFAYM 758
Query: 638 YKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYW 697
Y K + WW PGHGDW TCLEKY LC D +YHK+DQF R LPTF+Q+ L E EY
Sbjct: 759 YSKVAKSWWFAPGHGDWDTCLEKYVLCGDHIYHKKDQFHRPLPTFLQLLELDARELKEYM 818
Query: 698 AVVSAVFEGKPVD---SVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLR 754
V++ V EG ++ + SS +++ S +NNKV+LLR+ML+WE+++ EA+
Sbjct: 819 EVMTMVDEGIEIELQTQAGTSMSSQNLSSGSATTRLNNKVKLLRSMLQWEKEVHFEAA-- 876
Query: 755 QSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 814
+ +P S V EV+++ WPNG+I+R+ +GST +DAA ++G++ K++ VNGQL
Sbjct: 877 ------RHPDDPSSAVLTEVLVISWPNGDIVRMPAGSTVSDAAQRMGIDNKIMYVNGQLA 930
Query: 815 LPNTELKDGDIVEVR 829
LP EL+DGD++EVR
Sbjct: 931 LPLVELRDGDVIEVR 945
>gi|168004493|ref|XP_001754946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694050|gb|EDQ80400.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 667
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/736 (50%), Positives = 478/736 (64%), Gaps = 98/736 (13%)
Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP-SSGKRAVDTVVAGILHD 159
D QVQKAI +A+ AH GQFR+TG+PY+THCIHT RILA LIP GKR +DT++AGILHD
Sbjct: 17 DLQVQKAIEYAREAHAGQFRRTGEPYITHCIHTARILADLIPHQQGKRVIDTIIAGILHD 76
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V+DD S+ FGD+V+KLVAGVS+LS INQLLRR RR V
Sbjct: 77 VIDDTDRDHQSVRLHFGDDVSKLVAGVSKLSNINQLLRRQRRKAVT-------------- 122
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+L R + YALP AKA AVAQETL +WCSLAS+LG WA+KAE
Sbjct: 123 --------------RLFSRCN---CSYALPEAKASAVAQETLAVWCSLASKLGEWAVKAE 165
Query: 280 LEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 339
LEDLCFAV
Sbjct: 166 LEDLCFAV---------------------------------------------------- 173
Query: 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 399
+ +LL+AVVPF++LSDR++R + + +K KV++DA +AL +L ACEEALE+E
Sbjct: 174 LYELLQAVVPFEVLSDRKRRKWRI--VTPGPGEKKLPKVIRDAKVALAALSACEEALERE 231
Query: 400 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 459
LLI+TSY+PGMEV LS RLKSLYS + KMRRK VG+ +++DARALRV+VGD +G LH A
Sbjct: 232 LLIATSYVPGMEVRLSGRLKSLYSTWCKMRRKGVGVDQIFDARALRVIVGDGDGKLHVAA 291
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
++ CY+LL +VH LW P+ GEFDDYI+NPKPSGYQSLHTAVQGPDG+ LEVQIRT+ MH+
Sbjct: 292 VEGCYNLLSVVHSLWKPVGGEFDDYILNPKPSGYQSLHTAVQGPDGAPLEVQIRTRGMHD 351
Query: 520 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK-- 577
+AE+G AAHWLYKE +++ + M+ +++ S D D D +F K S +
Sbjct: 352 HAEYGHAAHWLYKEGDTVVKATTPMNPP-VDSPLPDSDDASD----DEQVFAKPSPRRPV 406
Query: 578 -MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 636
MGHP +RVE LLAAVI+ V GRELLVA SF L A E VA R Q K W Y R
Sbjct: 407 YMGHPALRVEDGRLLAAVIVGVMDEGRELLVAASFALHAREAVAAGRFGNQRKRWLTYCR 466
Query: 637 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 696
LYKK +D+WW PGHGDW TCLEKYTLCRDG+YHKQDQF R LPTFIQ+ L E E+ +Y
Sbjct: 467 LYKKVADQWWFAPGHGDWSTCLEKYTLCRDGLYHKQDQFDRSLPTFIQLLDLNESEQDDY 526
Query: 697 WAVVSAVFEGKPVDSVVSR---RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 753
W V+S V +G+ VD V + +D + TS +NNKV+LLR+ML+WE++LR E +
Sbjct: 527 WKVMSMVEQGEEVDIFVDNAADQHNDLGSGTSTTTRLNNKVKLLRSMLQWEQELRHEVAP 586
Query: 754 RQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQL 813
S + +P++ EV+++ WP+G+IMR+ +GSTAAD A ++G++G++V +N Q
Sbjct: 587 DGSVTILNPD-HPETAALVEVLVISWPDGDIMRMPAGSTAADLARRMGMDGEIVFINHQA 645
Query: 814 VLPNTELKDGDIVEVR 829
LP+T+L+DGD+VE R
Sbjct: 646 ALPHTKLRDGDLVETR 661
>gi|326495622|dbj|BAJ85907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/506 (64%), Positives = 393/506 (77%), Gaps = 30/506 (5%)
Query: 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 398
M+DLL+AV+PFD+ DRR+R+ FL++L SSEA +K K+V DA IALTSL ACEE L++
Sbjct: 1 MEDLLQAVLPFDLFLDRRRRSDFLNNLQSSSEASIRKPKIVDDAAIALTSLAACEEELQQ 60
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
ELLI+TSYIPGMEV LSSRLKSLYSI+ KM+RK VGI +VYDARALRV+VGDKNG LHGP
Sbjct: 61 ELLITTSYIPGMEVRLSSRLKSLYSIYCKMKRKHVGIRQVYDARALRVIVGDKNGALHGP 120
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
A++ CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 121 AVRSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMH 180
Query: 519 EYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
EYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 181 EYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP------ 228
Query: 571 QKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC 630
KY S+K+GHPV+R++G++LLAAVI+ +EKGG+ELLVAV F L ASE VA+RR SFQ+K
Sbjct: 229 SKYISMKVGHPVLRIDGNHLLAAVIVSIEKGGKELLVAVRFTLEASEDVAERRSSFQLKR 288
Query: 631 WEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTE 690
WEAYARL+KK +++WWC PGHGDW T LEKY LCRDG+YHKQDQFGRLLPTFIQI LTE
Sbjct: 289 WEAYARLHKKVTEKWWCAPGHGDWSTNLEKYILCRDGIYHKQDQFGRLLPTFIQIIDLTE 348
Query: 691 EEESEYWAVVSAVFEGKPVDSVVS------RRSSDSVAPTSMEASINNKVRLLRTMLRWE 744
EEE EYW VVSAVFEGK ++ S R +SD T + INNKV LLRTML+WE
Sbjct: 349 EEEEEYWMVVSAVFEGKETSTLTSESSNGDRSTSDLPISTPLSDPINNKVHLLRTMLQWE 408
Query: 745 EQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEG 804
EQ+R AS+ + LG K+ +P + EV I+CWP G+IMR+ +GSTAADA ++G++G
Sbjct: 409 EQVRRRASVAERSLGAKSLTDP---ILREVAIICWPYGKIMRMSTGSTAADAGRRLGVDG 465
Query: 805 KLVLVNGQLVLPNTELKDGDIVEVRV 830
KL+ VNG LVLP TELKDGDIVEVR
Sbjct: 466 KLLWVNGLLVLPQTELKDGDIVEVRT 491
>gi|147784360|emb|CAN72734.1| hypothetical protein VITISV_020261 [Vitis vinifera]
Length = 378
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/376 (69%), Positives = 302/376 (80%), Gaps = 19/376 (5%)
Query: 474 WIPIDGEFDDYIVNPKPSG---------YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 524
W+P D +N K G SLHTAVQGPD S LEVQIRTQ+MHEYAEHG
Sbjct: 3 WVPPKSISDMMFINYKGFGKSKRGVILWQNSLHTAVQGPDNSPLEVQIRTQRMHEYAEHG 62
Query: 525 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIR 584
LAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+R
Sbjct: 63 LAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLR 122
Query: 585 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 644
VEGS+LLAAV++RV+K GRELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDE
Sbjct: 123 VEGSHLLAAVVVRVDKDGRELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLYKKVSDE 182
Query: 645 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 704
WW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+F
Sbjct: 183 WWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIF 242
Query: 705 EGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ- 755
EGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ
Sbjct: 243 EGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQT 302
Query: 756 -SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 814
+K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ V
Sbjct: 303 KTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYV 362
Query: 815 LPNTELKDGDIVEVRV 830
LPNT+LKDGD+VEVR+
Sbjct: 363 LPNTQLKDGDVVEVRM 378
>gi|302792310|ref|XP_002977921.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
gi|300154624|gb|EFJ21259.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
Length = 370
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/389 (58%), Positives = 278/389 (71%), Gaps = 31/389 (7%)
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLLGMV+DPRVVL+KLADRLHNMRTIYALP KARAVAQETL +WCSLASRLG+W +KAE
Sbjct: 1 MLLGMVNDPRVVLVKLADRLHNMRTIYALPAPKARAVAQETLAVWCSLASRLGVWTVKAE 60
Query: 280 LEDLCFAVLQ------MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-DDESFTT 332
LEDLCFAVL+ +R+ LA+MWS V + R++T L T S +DES
Sbjct: 61 LEDLCFAVLEPQTFRELRSGLAAMWSVDEEVRHYRKMTKREKRRALIYGTESTEDESNEE 120
Query: 333 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 392
++ LSMKDLL+AV+PFD+LS R+ R K L S K+KV++D +AL +L C
Sbjct: 121 IED--LSMKDLLDAVIPFDLLSGRKNRGKQKFGLPPS---LSKSKVIEDTKVALAALSLC 175
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
EEAL+KE+ IST YIPG EVTLS RLKSLYS SKM+RK V + ++YDARALRVVVGD
Sbjct: 176 EEALDKEVAISTPYIPGTEVTLSGRLKSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGG 235
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
G LH AI+ CYSLLD+VHRLW+PI GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQI
Sbjct: 236 GKLHVAAIKGCYSLLDVVHRLWMPISGEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQI 295
Query: 513 RTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 572
RTQ MHE AE G AAHWLYKE+G + + D+ + S DTDL
Sbjct: 296 RTQLMHEQAESGNAAHWLYKESGAPVMT------QDLPTNGRDS---------DTDLTPS 340
Query: 573 YSS----LKMGHPVIRVEGSNLLAAVIIR 597
S+ +++ +P +R+EG +L AAV+IR
Sbjct: 341 SSTPSKQVQLRYPALRIEGGSLRAAVVIR 369
>gi|308810138|ref|XP_003082378.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
gi|116060846|emb|CAL57324.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
Length = 850
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 268/836 (32%), Positives = 413/836 (49%), Gaps = 139/836 (16%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
+V GVDV+ Y IF++ +V++A+ FA H G+ RK G+ Y HC+ + +ILA +P +G
Sbjct: 46 MVHGVDVSRYAIFDEPEVRRALGFATGWHGGRRRKNGETYARHCVESAKILAANLPGTGP 105
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI---N 203
++ D VVA +LHDV+DD S ++ E FG V LV VSR+ +NQ++RR RR +
Sbjct: 106 KSRDAVVACLLHDVLDDTGCSEETLREAFGPGVYNLVVQVSRVGSMNQVIRRRRRDLPES 165
Query: 204 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP-AKARAVAQETLL 262
+ L E+ LR +LL +V DPRV LIK+ADRLHNMRT+YA+ KA +A ETL
Sbjct: 166 DERNKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTLYAISSEQKAMDIANETLR 225
Query: 263 IWCSLASRLGLWALKAELEDLCFAVLQ------MRADLASMWSP-----------RNRVG 305
+WCSLA +LG+WA+K+ELEDLCFAVL+ +R MW P N G
Sbjct: 226 VWCSLAEKLGMWAIKSELEDLCFAVLEPDNFDSVREARDKMWRPIYEDEDEGLDSENSYG 285
Query: 306 YSRRITTIVSSPPLDERTA-------SDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 358
+ + + P + SDD + + L+MK +E++ FD +S R
Sbjct: 286 WLSKSFGVSKLPFFNAEETNASGSFDSDDSPSVQYTQAQLAMKMRIESIPSFDWISTRE- 344
Query: 359 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 418
S + +++ + +L +L + ELL+ Y + +++SSRL
Sbjct: 345 --------GDSLRYDRMSELPESIAASLNTLDEVRGRIWSELLMD-GYDSDLNISMSSRL 395
Query: 419 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQCCYSLLDIVHRLWIP 476
KS YS KM+RK + ++V DARA+R+VVGD + + G + CY+LLD++H+++ P
Sbjct: 396 KSAYSTHQKMKRKGLPFNRVCDARAMRIVVGDPSASAGGTEREVDACYALLDLIHKMYRP 455
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I+GE+DDYI+NPK +GY+SLHTAV GPDG+ EVQ+RT+ MH+ AE G+AA W+YK G
Sbjct: 456 IEGEYDDYIINPKQTGYRSLHTAVNGPDGAPFEVQVRTRSMHDSAEFGMAAQWMYK--GK 513
Query: 537 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVII 596
+ S + ++L+ D D +G V V V+I
Sbjct: 514 ATYASKSYQD------AALTDDVPD----------------VGAGVQLVSSGRRSCGVVI 551
Query: 597 RVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR----LYKKASDEWWCQPGHG 652
+ GG +LVA S+VVA + + E L ++ + E++
Sbjct: 552 --QSGGSRMLVAEPKQAQWSDVVAWMSEGYHKQLLEEVRESGLMLARQGTSEFFI----S 605
Query: 653 DWCTCLEKYTLCRDGMYHK-------------------------------------QDQF 675
++C C+++ D + HK Q
Sbjct: 606 EFCYCVDQRWHRVDNLGHKTRVTAEIVAKRLEMSNAEFGEEFGEEMDDIDARIRQLQTIA 665
Query: 676 GRLLPTFIQITHLTEEEESEYWAVVSAV------FEGKPVDSVVSRR----SSDSVAPTS 725
G LL + L E E + A V A+ + + + +R + ++ A +
Sbjct: 666 GDLLNDSTASSILQETELGNWSATVQAIKKRERAMQARQSQAEREKRWRTGAEEAPALSI 725
Query: 726 MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNG--E 783
+ AS K + + + EE + EA + S KAN +P+ V V+I+ W + E
Sbjct: 726 LMASSALKAKPAAGIFQTEEAAKFEAEVALS--SPKAN-HPNIDVEDGVMIITWTDNYPE 782
Query: 784 IMRLRSGSTAADAAM---KVGLEGKL----------VLVNGQLVLPNTELKDGDIV 826
+ ++ GST A+ K+ E +L V VN +V P T LKDGD++
Sbjct: 783 LHSIKRGSTVAEIREIIDKIPGEKRLAPPKVESDESVNVNMVMVPPTTTLKDGDMI 838
>gi|145353023|ref|XP_001420831.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581066|gb|ABO99124.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 890
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 206/505 (40%), Positives = 294/505 (58%), Gaps = 49/505 (9%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
GVDV+ Y IF + +V++A+AFA H GQ RK GD Y HC+ + +ILA +P +G R+
Sbjct: 81 GVDVSRYAIFQEPEVKRALAFAASWHRGQRRKNGDSYAKHCVESAKILAANLPGNGSRSR 140
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN---Q 206
D V A +LHDV+DD + +++ FG V LV VSR+ +N+++RR RR + +
Sbjct: 141 DAVCACLLHDVLDDTACTDETLKATFGTRVYNLVIQVSRVGQMNEVMRRRRRDVDDVEVK 200
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP-AKARAVAQETLLIWC 265
L E+ LR +LL +V DPRV LIK+ADRLHNMRTIYA+ KA +A ETL +WC
Sbjct: 201 AKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTIYAISSEEKAMDIANETLRVWC 260
Query: 266 SLASRLGLWALKAELEDLCFAVLQ------MRADLASMWSPRNR--------VGYSRRIT 311
SLA +LG+WA+K+ELEDLCFAVL + + W PR + S++
Sbjct: 261 SLAEKLGMWAIKSELEDLCFAVLDPENFDGIMTARSKAWKPRAKDMSGRARSSSKSKQTG 320
Query: 312 TIVSSPP----LD--------ERTASD--DESFTTFDEHV----LSMKDLLEAVVPFDIL 353
SSP LD E T SD D S + D+ L +K +E++ FD L
Sbjct: 321 QTESSPSSFFGLDAVSFFGAKEETESDSFDGSGSHDDDRYAPWQLDVKHRIESIPSFDWL 380
Query: 354 SDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI-STSYIPGMEV 412
S R S + + + +L++L A L ELL+ + + +
Sbjct: 381 STRE---------GDSLQVEGLTALPGSIAASLSTLDAIRGRLWSELLMDGYTTQSDLNI 431
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP--AIQCCYSLLDIV 470
++SSRLKS YS + KM+RK++ +V D RA+R+VVGD + + G I CY+LLD++
Sbjct: 432 SVSSRLKSAYSTYMKMKRKNLPFERVCDTRAMRIVVGDASTSERGTEREIDACYALLDLI 491
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 530
H+++ PI+GE+DDYI N K +GY+SLHTA+ GPDG+ LEVQ+RT+ MH+ AE G+AA W+
Sbjct: 492 HKMYRPIEGEYDDYITNAKKTGYRSLHTAIGGPDGAPLEVQVRTRSMHDAAEFGVAAQWM 551
Query: 531 YKETGNKLQSISSMDESDIEASSSL 555
YK K S S D S + + S+
Sbjct: 552 YKGK-PKFASKSYQDASHTDETPSV 575
>gi|224126647|ref|XP_002319889.1| predicted protein [Populus trichocarpa]
gi|222858265|gb|EEE95812.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/201 (72%), Positives = 164/201 (81%), Gaps = 13/201 (6%)
Query: 7 KNSP-----FPIFFCKFRRNRPKFSCLLDH-----ANVIAAAAAA---GKAHGAVTSAIT 53
K SP + + F ++ K+ CLLD ANVIAAA A+ G HGAVTSAIT
Sbjct: 6 KTSPSLFHRYSLHFRSSNSSKYKYRCLLDQIAPVSANVIAAAVASSGSGYLHGAVTSAIT 65
Query: 54 HVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKR 113
HVAVTAVAIASGACLST+VDFLWPK EEQPG FIVDGVDVTGYPIFN+ +V KAIAFAK+
Sbjct: 66 HVAVTAVAIASGACLSTRVDFLWPKGEEQPGCFIVDGVDVTGYPIFNEAKVVKAIAFAKK 125
Query: 114 AHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
AHHGQFRKTGDPY THCIHT RILAML+PS+GKRA+DT+VAGILHDVV+D ESL SIEE
Sbjct: 126 AHHGQFRKTGDPYFTHCIHTARILAMLVPSTGKRAIDTLVAGILHDVVEDTSESLLSIEE 185
Query: 174 EFGDEVAKLVAGVSRLSYINQ 194
FG++VAKLVAGVS++SYINQ
Sbjct: 186 NFGEDVAKLVAGVSKISYINQ 206
>gi|424513407|emb|CCO66029.1| GTP pyrophosphokinase [Bathycoccus prasinos]
Length = 1103
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 198/561 (35%), Positives = 278/561 (49%), Gaps = 128/561 (22%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP---- 142
+V GVDVT +PIF DE V KA+ FA+ H GQ RKTG+PY+TH + RILA +P
Sbjct: 183 VVQGVDVTLFPIFKDEVVLKAVKFAEEKHKGQSRKTGEPYVTHLVEAARILAAALPEPRD 242
Query: 143 ------SSGKRAVDTVVAGILHDVVDDACESLGSI-------------EEEFGDEVAKLV 183
++ ++ +T+ A +L +DD ++ +E FGD A+LV
Sbjct: 243 QNKFGSTTREKLRETISACLLVATLDDPNSKSSNLLKGETNDRIKDELKENFGDATAELV 302
Query: 184 AGVSRLSYINQLLRRHRRINVNQGTLGHEEAND--------------------------L 217
+R+ + +RR +R + ++ AN+ L
Sbjct: 303 LQAARMGKLMAGVRRRQRRKRRENSMMSSSANNSTTSSSEEEIEAQKEEEEEEIDDNEKL 362
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
+LL +V DPRV LIK+A+RLHNMRT+YAL P KA VA ETL +WCS A +LG+W +K
Sbjct: 363 EELLLDVVKDPRVFLIKIAERLHNMRTLYALDPRKAETVADETLRVWCSFAEKLGIWTVK 422
Query: 278 AELEDLCFAVL---------QMRADLASMWSPRNRVGYSRRITTIVSSPPL-DERTASD- 326
+ELED+CFAVL Q R D S R R TI +P L +ER +
Sbjct: 423 SELEDMCFAVLEPERFEEIVQSRDDFWLEESKRGRFRGKNFRGTI--APELQEERNEKEK 480
Query: 327 ----------------------------DESFTTFDEHVLSMKDLLEAVVPFDILSDR-- 356
D S+T +E +++ L+ V PF+ L+ R
Sbjct: 481 AEKEALAFKTNQNKNNYVMMDALDETERDPSWTRLNETQRALRRRLQCVQPFEALTTRDG 540
Query: 357 ---RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 413
R K L + +K +L +L + + + L + + + V
Sbjct: 541 GAMRIDEKVLRESPMRPATKK----------SLEALAQWQNKMFQALRLD-GVVLNVNVR 589
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD----KNGTLHGPA---------- 459
+SSRLKSL+S KM+RK+V +VYD RA R+++GD T G
Sbjct: 590 MSSRLKSLFSTSEKMKRKNVPFSEVYDGRATRIIIGDPVSASTMTSDGEGSASEFFDKDK 649
Query: 460 --------IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 511
I+ CY+LL+ VH++ PI+GE+DDYI PK SGY+SLHTAV G DG LEVQ
Sbjct: 650 LDSGLPSEIEACYALLNAVHKINRPINGEYDDYITKPKKSGYKSLHTAVLGDDGKPLEVQ 709
Query: 512 IRTQKMHEYAEHGLAAHWLYK 532
IRT+ MH+ AE G+AAHWLYK
Sbjct: 710 IRTRGMHDAAEWGVAAHWLYK 730
>gi|224126639|ref|XP_002319887.1| predicted protein [Populus trichocarpa]
gi|222858263|gb|EEE95810.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%)
Query: 517 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 576
MHEYAEHGLAAHWLYKETGN L SI S DES+ EASS LSKD DD ++ D FQKY SL
Sbjct: 1 MHEYAEHGLAAHWLYKETGNTLSSIGSTDESETEASSYLSKDIDDQTSMEDDQFQKYRSL 60
Query: 577 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 636
K GHPV+RVE S+LLAAVIIRVEKGGRELLVAVSFGLAASE VADRR SFQIK WEAYAR
Sbjct: 61 KAGHPVLRVERSHLLAAVIIRVEKGGRELLVAVSFGLAASEAVADRRSSFQIKQWEAYAR 120
Query: 637 LYKKASDEWWCQPGHGDWCTCLEKYTLCRD 666
LYKK SDEWWC+PGHGDWCTCLEKYT CRD
Sbjct: 121 LYKKVSDEWWCEPGHGDWCTCLEKYTFCRD 150
>gi|434402920|ref|YP_007145805.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
gi|428257175|gb|AFZ23125.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
Length = 756
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 165/442 (37%), Positives = 216/442 (48%), Gaps = 109/442 (24%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 46 RAFQFAYQLHQGQYRKSGEPYIGHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IEE FG EV +LV GV++LS +IN T +A + R M L M
Sbjct: 101 VTIDQIEERFGPEVRQLVEGVTKLS----------KINFKSKT--ESQAENFRRMFLAMA 148
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ +P K R +AQET I+ LA+RLG+W K ELEDL F
Sbjct: 149 QDIRVIVVKLADRLHNMRTLQFMPDEKRRRIAQETRDIFAPLANRLGIWQFKWELEDLAF 208
Query: 286 AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 345
L+ A R+I T VS E+ A+ +E T
Sbjct: 209 KYLEPEA--------------FRQIQTYVS-----EKRAAREEKLTKVT----------- 238
Query: 346 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 405
DIL R +Q AG V C
Sbjct: 239 -----DILRQR----------------------LQQAG------VRC------------- 252
Query: 406 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
V +S R K LY I+ KM R+ H++YD ALR++V + CY
Sbjct: 253 ------VDVSGRTKHLYGIYQKMHRQQKEFHEIYDLAALRIIVQTN---------EECYR 297
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
L +VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+
Sbjct: 298 ALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVMGLTGRPLEVQIRTQEMHHVAEYGI 357
Query: 526 AAHWLYKETGNKLQS-ISSMDE 546
AAHW YKE+G S ++ DE
Sbjct: 358 AAHWKYKESGGSNNSQVTGTDE 379
>gi|238926103|ref|ZP_04657863.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
gi|238885993|gb|EEQ49631.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
Length = 739
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 224/470 (47%), Gaps = 118/470 (25%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + ++ +A FA AH GQ R +G+PY+ H +H IL L +T+ A
Sbjct: 22 PNADINKIVRAYEFAANAHRGQERVSGEPYIVHPMHVAYILTTLHLDD-----ETICAAF 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D +L IE FG V L+ GV++L I + + ++ +
Sbjct: 77 LHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIESMSKEDVKLE------------N 124
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M L M D RV++IKLADRLHNMRT+ + K + +A+ETL ++ LA+RLG+ +
Sbjct: 125 YRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIARETLEVYAPLANRLGISGI 184
Query: 277 KAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336
KAELEDLC L+ E++ T E
Sbjct: 185 KAELEDLCLRYLE-------------------------------------PEAYYTLVE- 206
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 396
++ RR+R +F+ D + AQ +A
Sbjct: 207 --------------EVKQKRRERQEFIQDAVQKIRAQLEA-------------------- 232
Query: 397 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
G+E + R K YSI+ KM+R + I+++YD A+RV+V
Sbjct: 233 -----------AGIEAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS------- 274
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
++ CY +L ++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+
Sbjct: 275 --TVKDCYGVLGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKA 331
Query: 517 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 561
MH+ +E G+AAHW YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 332 MHQISEFGIAAHWKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
>gi|304436591|ref|ZP_07396560.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370287|gb|EFM23943.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 739
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 225/470 (47%), Gaps = 118/470 (25%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + ++ +A FA AH GQ R +G+PY+ H +H IL L +T+ A
Sbjct: 22 PNADINKIIRAYEFAANAHRGQERVSGEPYIVHPMHVAYILTTLHLDD-----ETICAAF 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D +L IE FG V L+ GV++L I + + ++ +
Sbjct: 77 LHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIESMSKEDVKLE------------N 124
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M L M D RV++IKLADRLHNMRT+ + K + +A+ETL ++ LA+RLG+ +
Sbjct: 125 YRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIARETLEVYAPLANRLGISGI 184
Query: 277 KAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336
KAELEDLC L+ E++ T E
Sbjct: 185 KAELEDLCLRYLE-------------------------------------PEAYYTLVE- 206
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 396
++ RR+R +F+ D + AQ ++ AGI
Sbjct: 207 --------------EVKQKRRERQEFIQDAVQKIRAQ-----LETAGI------------ 235
Query: 397 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
E + R K YSI+ KM+R + I+++YD A+RV+V
Sbjct: 236 --------------EAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS------- 274
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
++ CY +L ++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+
Sbjct: 275 --TVKDCYGVLGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKA 331
Query: 517 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 561
MH+ +E G+AAHW YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 332 MHQISEFGIAAHWKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
>gi|224126635|ref|XP_002319886.1| predicted protein [Populus trichocarpa]
gi|222858262|gb|EEE95809.1| predicted protein [Populus trichocarpa]
Length = 161
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/160 (75%), Positives = 136/160 (85%)
Query: 671 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASI 730
+QDQF RLLPTFIQ+ L EEEESEY AV+SAVFEGKPVDS+ SR + D+VA TSMEASI
Sbjct: 2 QQDQFERLLPTFIQVIDLMEEEESEYRAVLSAVFEGKPVDSIASRPNIDTVASTSMEASI 61
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
NNKVRLLRTML+WEEQLR EA L Q K K+ + +S GEVVIVCWP+GEI+RLRSG
Sbjct: 62 NNKVRLLRTMLQWEEQLRYEAILGQPKHERKSYSSLESGGLGEVVIVCWPHGEIIRLRSG 121
Query: 791 STAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
STAADAA +VG +GKLVLVNGQLVLPNTELKDGD+VEVRV
Sbjct: 122 STAADAARRVGFDGKLVLVNGQLVLPNTELKDGDVVEVRV 161
>gi|414870236|tpg|DAA48793.1| TPA: hypothetical protein ZEAMMB73_708443 [Zea mays]
Length = 713
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 168/449 (37%), Positives = 221/449 (49%), Gaps = 105/449 (23%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF DE V KA A+RAH GQ R +GDPYL HC+ T LA + G A V AG+L
Sbjct: 213 IFRDELVVKAFKEAERAHRGQKRASGDPYLQHCVETAVHLANI----GANAT-VVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R + N T+ EA+ L
Sbjct: 268 HDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLSHLSKLARDN---NTASRTV---EADRL 321
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
M L M D R VLIKLADRLHNM TI ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 322 HTMFLAMAD-ARAVLIKLADRLHNMNTIEALPLVKQQRFAKETMEIFVPLANRLGIASWK 380
Query: 278 AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHV 337
LE++CF L +P S ++ +FDE +
Sbjct: 381 DHLENICFKHL----------NPEEHKELSSKL-------------------LMSFDEAL 411
Query: 338 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALE 397
L T LH+L KS ++D GI+ S
Sbjct: 412 L---------------------TSTLHNLDKS---------LRDEGISYHS--------- 432
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
LS R KSLYSI+SKM +K++ + V+D LR+VV +
Sbjct: 433 ----------------LSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVETEED---- 472
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
CY LDIVH+LW + G F DYI +PK +GY+SLHT + E+QIRT++M
Sbjct: 473 -----CYRALDIVHKLWPRVTGRFKDYICHPKLNGYRSLHTVIMCEGVHPFEIQIRTKEM 527
Query: 518 HEYAEHGLAAHWLYKETGNKLQSISSMDE 546
H AE+G AAHW YKE G + + M E
Sbjct: 528 HLQAEYGFAAHWRYKEGGCRHSFVLQMVE 556
>gi|384245712|gb|EIE19205.1| hypothetical protein COCSUDRAFT_59689 [Coccomyxa subellipsoidea
C-169]
Length = 880
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 247/501 (49%), Gaps = 94/501 (18%)
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
+L++ V+PF ++ R + +S+ Q +A AL L C L EL
Sbjct: 453 ELIQTVLPFYAVTFR----------SGASQQQSRA--------ALDVLDKCAHRLLYELK 494
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
+ G++V + R+KSLYS++ KM RK V + +V+DA ALRVVV D+NG AI+
Sbjct: 495 ME-GLATGLDVHVEGRIKSLYSMYRKMIRKSVSLREVFDALALRVVVDDQNGFKMQRAIE 553
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY + VHRLW PI GE DDYI NPK SGYQSLH+AV GP G +EVQIRT MHE A
Sbjct: 554 ACYEIQPAVHRLWRPIRGELDDYIFNPKASGYQSLHSAVIGPAGVPMEVQIRTSSMHEIA 613
Query: 522 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHP 581
E+G AAHW YK+T + + ++A +S S DT +K+G P
Sbjct: 614 EYGAAAHWAYKDTPH----------APVQAGASTSGDT----------------IKVGQP 647
Query: 582 VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR-PSFQIKCWEAYARLYKK 640
++RV L V++ +E G +LVAV + S V+ D Q+K AY R K
Sbjct: 648 MVRVLRGKLQLGVVVDIE--GDRMLVAV---VVPSRVMPDTSIDKNQVKTVLAYVRRKK- 701
Query: 641 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 700
+W PGHGD LE Y LC+DG +H D + + P F+ +
Sbjct: 702 ----FWA-PGHGDLHLSLESYMLCKDGYWHLVDSYDQKQPPFVMPLQNVQ---------- 746
Query: 701 SAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGG 760
K D V + TS EA K RLLR ML W+ L + + + G
Sbjct: 747 ------KGFDGVKGKAKL-----TSAEA---RKARLLRRMLEWQRDLLGDPDGMEGEAGS 792
Query: 761 KANGNPDSVVP--GEVVIVCWPNGEIMRLRSGSTAADAAMKVGL-----EG------KLV 807
+ + ++ +P +V ++ P G+I ++ G+TA D + G EG +LV
Sbjct: 793 GGSSSGNAPIPQSSQVQVLIVPTGKIEQVERGTTAGDIIRQKGRIEIEEEGRRHIGPRLV 852
Query: 808 LVNGQLVLPNTELKDGDIVEV 828
VN LV +T L DGD V +
Sbjct: 853 NVNNHLVPESTPLGDGDWVSL 873
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 135/231 (58%), Gaps = 25/231 (10%)
Query: 118 QFRKTGDPYLTHCIHTGRILAMLIPSS-----GKRAVDTVVAGILHDVVDDACESLGSIE 172
Q R TGDPY+ HC+ T I+ L +S +R V+A +LHDVVDD SL +
Sbjct: 63 QKRLTGDPYIMHCVETAAIVECLHATSKLDEMDERVEAAVLAALLHDVVDDTRVSLEEVR 122
Query: 173 EEFGDEVAKLVAGVSRLSYINQLLRR----HRRINVNQGT----LGHEEANDLRVMLLGM 224
EFG +A++V V++LS QLLRR H + V L EE DLR M+L M
Sbjct: 123 AEFGPRIARIVGQVAQLSTTTQLLRRRRRTHNEMYVGAAAPAPELTREEDADLRNMILAM 182
Query: 225 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 284
VD+P V+++KLADRLHNMRT++AL P + RAVA ET+ +WCSLA RLG+++LK+ELEDLC
Sbjct: 183 VDEPLVLVVKLADRLHNMRTVFALRPDRQRAVALETMQVWCSLAERLGMYSLKSELEDLC 242
Query: 285 FAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASD--DESFTTF 333
FAV+ PR + TI PPL +D D++ T
Sbjct: 243 FAVMH----------PREYRALRSELDTIWGLPPLSPTCIADAADKALTPL 283
>gi|428297512|ref|YP_007135818.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 6303]
gi|428234056|gb|AFY99845.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 6303]
Length = 758
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 208/430 (48%), Gaps = 108/430 (25%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ+RK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 46 RAFIFAYQLHQGQYRKSGEPYIYHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IE +FG+EV +LV GV++LS +IN T G +A + R M L M
Sbjct: 101 VTVEDIESKFGEEVRRLVEGVTKLS----------KINFKSKTEG--QAENFRRMFLAMA 148
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ + R AQET I+ LA+RLG+W K ELEDL F
Sbjct: 149 QDIRVIVVKLADRLHNMRTMEVMSEESRRRNAQETRDIYAPLANRLGIWRFKWELEDLAF 208
Query: 286 AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 345
L+ +SF +HV +D
Sbjct: 209 KYLE-------------------------------------PQSFREMQKHVAEKRDA-- 229
Query: 346 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 405
R R K + D+ ++ + +AGI T
Sbjct: 230 ----------REDRLKTVSDMLRTR--------MVEAGIQCTD----------------- 254
Query: 406 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
+S R K LYSIF KM+R++ +++YD A+RV+V + CY
Sbjct: 255 --------ISGRPKHLYSIFQKMQRQNKEFNEIYDLAAIRVIVTTN---------EECYR 297
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
L ++H ++ PI G F DYI PK + YQSLHT V P G LE QIRT +MH AE+G+
Sbjct: 298 ALAVLHDVFRPIPGRFKDYIGLPKSNRYQSLHTGVISPWGRPLEAQIRTLEMHRIAEYGI 357
Query: 526 AAHWLYKETG 535
AAHW YKETG
Sbjct: 358 AAHWKYKETG 367
Score = 39.3 bits (90), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K +R +L W+ L+ S K N D V V P G+++ L +G
Sbjct: 378 DEKFTWVRQLLEWQNDLKDAQEYMDSI---KNNLFEDDVY------VFTPKGDLVALSAG 428
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST+ D A + VG VNG+++ +T+L++GDIVE+
Sbjct: 429 STSVDFAYRIHSEVGNHCGGAKVNGRMIPLSTKLQNGDIVEI 470
>gi|307103379|gb|EFN51640.1| hypothetical protein CHLNCDRAFT_59199 [Chlorella variabilis]
Length = 1290
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 246/515 (47%), Gaps = 87/515 (16%)
Query: 338 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGI--ALTSLVACEEA 395
L K L++ V+PFD T F AK+ AG L L AC +
Sbjct: 745 LQAKLLIDTVLPFDA-------TTF-----------NIAKLRSGAGALRGLEVLQACAQL 786
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L +E+ + S G+EV++ RLKSLYS F KM RK V + +VYDARALRVVV D G
Sbjct: 787 LMREI-GTESLASGLEVSVQGRLKSLYSTFRKMSRKAVPLSEVYDARALRVVVDDDGGRR 845
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
AI CY LL VHRL+ + GE DDYI PKPSGYQSLHTAV GP G +EVQ+RT
Sbjct: 846 QAEAIAACYKLLPAVHRLFRRVAGEEDDYIAQPKPSGYQSLHTAVIGPGGVPMEVQMRTS 905
Query: 516 KMHEYAEHGLAAHWLYKE---------TGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 566
MH AE+G AAHW YKE G S+ + + + S+ + + D D
Sbjct: 906 SMHSDAEYGKAAHWAYKEKPAVPAVQLPGPAAPSLPAPSSASTSSGSATTSGSVDDE--D 963
Query: 567 TDLFQKYSSLKMGHPVIRV-EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 625
D + + GHP++ + G L V++ E GGR LL AVS V D RP+
Sbjct: 964 GD-----AGIAAGHPMLHIGPGGRLRDGVVVASEFGGRRLLCAVS---QEQRAVPDARPA 1015
Query: 626 FQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQI 685
E Y L + + + QP GD +E +TLC DG YH+ D+FG LPT +
Sbjct: 1016 PA----ERYRALLRYVEERGYFQPSQGDMTAAMELFTLCSDGKYHRIDRFGHKLPTVVVP 1071
Query: 686 THLTEEEESEYWAVVSAVFEGKPVDSVVSR------------------RSSDSVAPTSME 727
L EEEE+ A S++ + RS SV M+
Sbjct: 1072 LTLEEEEEAASAADASSLSGSAAAAVAGAAGSEGAAGGGGAGPAPEHIRSQSSVE-GEMD 1130
Query: 728 ASINNKVRLLRTMLRWEEQL----RSEASLRQS----------------KLGGKANGNPD 767
+NN++ LLR+ML W +L +E++L Q +L + G
Sbjct: 1131 -YMNNRIPLLRSMLEWGRELGASIAAESALAQEAAAGNDAAAIAAWTERQLAPQVQGADG 1189
Query: 768 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGL 802
+ +V+++ WP G I+R+ G+TA +GL
Sbjct: 1190 AGA--DVMVLIWPGGRILRVPRGTTAGTVIRDLGL 1222
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 160/291 (54%), Gaps = 33/291 (11%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHH--------------GQFRKTGDPYLTHCI 131
++ GVD++G F VQ+A FA RAH GQ RKT PY++HC+
Sbjct: 345 LLLHGVDISGSRFFCRPIVQQAAEFAARAHRQAPAAAGGLEPGRRGQVRKTRTPYVSHCV 404
Query: 132 HTGRILAMLIPSSGK--RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL 189
T I+ L+ + + RA VVA +LHDV+DD G +EE FG +VA +VA VS+L
Sbjct: 405 ETALIVEGLLSPTEEDERAEAAVVAALLHDVLDDTEVEAGEVEELFGAQVASMVAKVSQL 464
Query: 190 SYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP 249
S NQ++RR R+ Q T EE LR M+L MV +P V+ IKLADRLHNMRT++AL
Sbjct: 465 STTNQIVRRRLRVESAQPT--KEEEAQLRNMILTMVGEPLVIAIKLADRLHNMRTVFALS 522
Query: 250 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRR 309
P K +AVA ET +WCSLA RLG++A+K+ELEDLCFAVLQ P R+
Sbjct: 523 PEKQQAVASETRRVWCSLAERLGMFAVKSELEDLCFAVLQ----------PAEYRALRRQ 572
Query: 310 ITTIVSSPPLDERTAS-----DDESFTTFDEHVLSMKDLLEAVVPFDILSD 355
+ + P + ++ AS DE D H+ A P SD
Sbjct: 573 LDELWGVPTIPDQAASLDACLSDEYECRVDLHLTPTSPAASAASPGSTGSD 623
>gi|298491762|ref|YP_003721939.1| (p)ppGpp synthetase I ['Nostoc azollae' 0708]
gi|298233680|gb|ADI64816.1| (p)ppGpp synthetase I, SpoT/RelA ['Nostoc azollae' 0708]
Length = 758
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 210/441 (47%), Gaps = 109/441 (24%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FA + H GQ+RK+G+ Y+ H + +L L S + AG LHDVV+D
Sbjct: 47 AFQFAYQLHQGQYRKSGEAYIAHPVAVAGLLRDLGGSPA-----MIGAGFLHDVVEDTEV 101
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 226
++ IEE FG EV +LV GV++LS +IN T +A + R M L M
Sbjct: 102 TIEEIEEHFGAEVRQLVEGVTKLS----------KINFTSKT--ESQAENFRRMFLAMAQ 149
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 286
D RV+++KLADRLHNMRT+ + A R AQET I+ LA+RLG+W +K ELEDL F
Sbjct: 150 DIRVIVVKLADRLHNMRTLQYMSEASRRRSAQETRDIFAPLANRLGIWRVKWELEDLAFK 209
Query: 287 VLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEA 346
L+ ++F +HV
Sbjct: 210 YLE-------------------------------------PDAFREIQQHV--------- 223
Query: 347 VVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSY 406
KRT LA+++E +K +Q AGI C
Sbjct: 224 ---------SEKRTAREEKLARATEVLRKR--MQQAGI------QC-------------- 252
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
+ +S R K LYSI+ KM R+ H++YD ALR++V + CY
Sbjct: 253 -----LDVSGRPKHLYSIYQKMHRQHKEFHEIYDLAALRIIVQTN---------EECYRA 298
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L +VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+A
Sbjct: 299 LAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHHVAEYGIA 358
Query: 527 AHWLYKETGNKLQS-ISSMDE 546
AHW YKETG S ++ DE
Sbjct: 359 AHWKYKETGGSTNSQLTGTDE 379
>gi|407002062|gb|EKE18918.1| hypothetical protein ACD_9C00200G0011 [uncultured bacterium]
Length = 494
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 221/437 (50%), Gaps = 113/437 (25%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA++AH GQ R++G+ Y H T +ILA + GK T+ AG++HDV +D
Sbjct: 25 ISEAYEFAQQAHEGQKRRSGEEYFQHPAATAKILAQM-GMGGK----TIAAGLMHDVPED 79
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA--NDLRVML 221
+L IE++FG E+A LV GV++L I LR G+ HEE +LR ML
Sbjct: 80 TEFTLEDIEKKFGKEIAHLVDGVTKLGRIK--LR---------GS--HEEYYLENLRKML 126
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNM+T+ LPP K + +AQET+ I+ +A
Sbjct: 127 LAMASDIRVILIKLADRLHNMQTLNHLPPDKQQRIAQETMEIFAPIA------------- 173
Query: 282 DLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
NR+G + +T D SF D+ S+
Sbjct: 174 --------------------NRLGIG------------EIKTQLQDLSFRYLDKENYSLV 201
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
LE D ++R+++ VQ A + +E ++KE
Sbjct: 202 KELEE-------KDYKERSRY----------------VQQA------IDELKEEIKKE-- 230
Query: 402 ISTSYIPGMEVTLSS-RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
G+++ + R KS+YS+F K+++ D+ I+++YD A+R++V P +
Sbjct: 231 -------GIQIIQADGRAKSIYSLFLKLQKHDMDINRIYDLAAVRIIV---------PEV 274
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY L IVH+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH
Sbjct: 275 ADCYETLGIVHKKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNE 334
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW+Y E +
Sbjct: 335 AEFGIAAHWIYTENKKR 351
>gi|225850169|ref|YP_002730403.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
gi|225646582|gb|ACO04768.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
Length = 716
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 211/452 (46%), Gaps = 114/452 (25%)
Query: 84 GTFIVDGVDVTGYPIFNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML 140
G + D + Y D+ +QK A + H GQFRK+G+PY H I ++LA L
Sbjct: 7 GELVEDLIKKVDY--LEDQDIQKIREAAYYIIEKHEGQFRKSGEPYYIHPIEAAKVLADL 64
Query: 141 IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 200
K T++AG+LHDVV+D ++ I+E FG+ VA +V GV+++
Sbjct: 65 -----KLDRTTIIAGLLHDVVEDTDTTIDEIKERFGETVALIVDGVTKIG---------- 109
Query: 201 RINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 260
+ N N EA + R ML+ M D RV+L+KLADRLHN+RT+ LP K + +A+ET
Sbjct: 110 KYNFNSKE--EAEAENFRKMLVSMAKDIRVILVKLADRLHNIRTLDPLPEYKQKRIAKET 167
Query: 261 LLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLD 320
L I+ LA+RLGLW +KAELED F L A Y + T + S +
Sbjct: 168 LDIYAPLAARLGLWKIKAELEDTSFKYLYPEA-------------YKKITTYLAESKTVQ 214
Query: 321 ERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ 380
E+ E + ++D+L+ +I +D + R K L+ +
Sbjct: 215 EK---------YLQEIISQIRDVLDK---HNIKADIQYRAKHLYSI-------------- 248
Query: 381 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYD 440
E+ L K+L +S +YD
Sbjct: 249 -----------YEKTLRKDLSLSD---------------------------------IYD 264
Query: 441 ARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV 500
+RV+V I+ CY L ++H LW P+ G F DYI PK + YQ+LHT V
Sbjct: 265 VYGVRVLVH---------TIKDCYLALGLIHSLWPPVPGRFKDYISLPKSNMYQALHTTV 315
Query: 501 QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
P G +E+QI+T KMH AE G+AAHW YK
Sbjct: 316 VAPKGKFVEIQIKTYKMHRIAEEGIAAHWRYK 347
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 744 EEQLRSEASLRQSKLGGKANGNPD--SVVPG----EVVIVCWPNGEIMRLRSGSTAADAA 797
E+ L+S LR K N + + S V G E V V P G++++L GST D A
Sbjct: 354 EKDLKSFTWLRNILESIKENKDTEIISTVKGDLSNEEVYVFTPKGDLVKLPLGSTPVDFA 413
Query: 798 MK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+ VG VNG++V +T+LK+GD+VE+
Sbjct: 414 YQIHTQVGHRTAGAKVNGKMVPLDTKLKNGDVVEI 448
>gi|126660186|ref|ZP_01731304.1| (p)ppGpp 3'-pyrophosphohydrolase [Cyanothece sp. CCY0110]
gi|126618551|gb|EAZ89302.1| (p)ppGpp 3'-pyrophosphohydrolase [Cyanothece sp. CCY0110]
Length = 744
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 209/430 (48%), Gaps = 108/430 (25%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYKLHEGQARKSGEPYIAHPVAVAGILRDL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IEE FG EVA LV GV++LS + N + T ++A + R M L M
Sbjct: 96 VTVEEIEEMFGHEVALLVEGVTKLS----------KFNFSNKT--EQQAENFRRMFLAMA 143
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K R +A+ET I+ LA+RLG+W +K ELEDL F
Sbjct: 144 KDIRVIVVKLADRLHNMRTLEPLRPEKQRRIARETKEIFAPLANRLGIWRVKWELEDLSF 203
Query: 286 AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 345
L+ P + R I ++S +D T + ++K+ L+
Sbjct: 204 KYLE----------PED----YREIQNLISEKRIDRET------------RIETVKNTLQ 237
Query: 346 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 405
K + D GI++ EL
Sbjct: 238 -------------------------------KRLDDMGISIL-----------ELQGRPK 255
Query: 406 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
++ G+ + + K + I YD ALR++V + CY
Sbjct: 256 HLYGIYFKMQRQNKGFHEI--------------YDLAALRIIVKTN---------EECYR 292
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
L +VH ++ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+
Sbjct: 293 ALAVVHDVFKPMPGRFKDYIGLPKPNRYQSLHTTVVGLNGRPLEIQIRTLEMHHIAEYGI 352
Query: 526 AAHWLYKETG 535
AAHW YKETG
Sbjct: 353 AAHWKYKETG 362
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 733 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 792
K LR +L W+ L+ + + D++ +V + PNG+++ L G+T
Sbjct: 375 KFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVISLSRGAT 425
Query: 793 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
A D A + VG K +NG+ + + L +GDIVE+
Sbjct: 426 AVDFAYRIHTEVGNHMKGARINGKWSVLDQPLHNGDIVEI 465
>gi|172039304|ref|YP_001805805.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Cyanothece sp.
ATCC 51142]
gi|354552428|ref|ZP_08971736.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. ATCC 51472]
gi|171700758|gb|ACB53739.1| probable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase,
(ppGpp)ase [Cyanothece sp. ATCC 51142]
gi|353555750|gb|EHC25138.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. ATCC 51472]
Length = 744
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 208/430 (48%), Gaps = 108/430 (25%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYKLHEGQTRKSGEPYIAHPVAVAGILRDL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IEE FG EVA LV GV++LS + N + T ++A + R M L M
Sbjct: 96 VTVEEIEEMFGQEVALLVEGVTKLS----------KFNFSNKT--EQQAENFRRMFLAMA 143
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K + +A+ET I+ LA+RLG+W +K ELEDL F
Sbjct: 144 RDIRVIVVKLADRLHNMRTLEPLRPEKQKRIARETKEIFAPLANRLGIWRVKWELEDLSF 203
Query: 286 AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE 345
L+ P + R I VS +D T + ++K++L+
Sbjct: 204 KYLE----------PED----YREIQNFVSEKRIDRET------------RIETVKNILQ 237
Query: 346 AVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTS 405
K + D GI + EL
Sbjct: 238 -------------------------------KRLDDMGIQVL-----------ELQGRPK 255
Query: 406 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
++ G+ + + K + I YD ALR++V + CY
Sbjct: 256 HLYGIYFKMQRQNKGFHEI--------------YDLAALRIIVKTN---------EECYR 292
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
L +VH ++ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+
Sbjct: 293 ALAVVHDVFKPMPGRFKDYIGLPKPNRYQSLHTTVVGLNGRPLEIQIRTLEMHHIAEYGI 352
Query: 526 AAHWLYKETG 535
AAHW YKETG
Sbjct: 353 AAHWKYKETG 362
>gi|157741797|gb|ABV69554.1| RelA/SpoT-like protein [Ipomoea nil]
Length = 727
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 213/446 (47%), Gaps = 105/446 (23%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF+D+ V KA A+ AH GQ R +GDPYL HC+ T +LA + +S V AG
Sbjct: 221 HKIFHDDLVVKAFCEAENAHRGQMRASGDPYLQHCVETAVLLATIGANST-----VVAAG 275
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD + I FG VA LV GVS+LS++++L R + N EA+
Sbjct: 276 LLHDTLDDTFVTYNYISLSFGAGVADLVEGVSKLSHLSKLARENDTANKIV------EAD 329
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM T+ +LP K + A+ETL I+ LA+RLG+
Sbjct: 330 RLHTMFLAMAD-ARAVLIKLADRLHNMMTLDSLPMIKQQRFAKETLEIFAPLANRLGIST 388
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDE 335
K +LE+LCF L N V + + +V T+FDE
Sbjct: 389 WKEQLENLCFKYL-------------NPVQHKELTSKLV----------------TSFDE 419
Query: 336 HVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEA 395
++ +S +K + ++D I+ SL ++
Sbjct: 420 AMV------------------------------TSAVEKLERALKDESISYHSLSGRHKS 449
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L S++ SK + + + +++D LR++V ++
Sbjct: 450 L----------------------YSIHRKMSKKK---LNMDEIHDIHGLRIIVENEED-- 482
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
CY +VH+LW + G+F DYI++PK +GYQSLHT V LEVQIRT+
Sbjct: 483 -------CYKAATVVHQLWPEVPGKFKDYILHPKFNGYQSLHTVVTREGMVPLEVQIRTK 535
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSI 541
+MH AE G AAHW YKE K S
Sbjct: 536 EMHLQAEFGFAAHWRYKEGDCKHSSF 561
>gi|452821782|gb|EME28808.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Galdieria
sulphuraria]
Length = 776
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 149/483 (30%), Positives = 234/483 (48%), Gaps = 121/483 (25%)
Query: 72 VDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCI 131
V++ W +LE Q +T + + ++ A+ A +AH Q R +GDP++TH +
Sbjct: 84 VEYYWSQLETQ----------LTYHSTSDLRVIKSALQLAYQAHELQKRHSGDPFITHPV 133
Query: 132 HTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSY 191
ILA L + DT+VAG+LHD V+D +L +IE+ FG EV ++V G +++S
Sbjct: 134 AVANILAEL-----RMDRDTIVAGLLHDTVEDTEVTLSTIEQLFGMEVRRIVEGETKVSK 188
Query: 192 INQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA 251
+ ++ I++++ +A +LR + + M +D R++++KLADRLHNMRT+ + A
Sbjct: 189 LPKM----ADISIDK------QAENLRQLFIAMTEDWRIIIVKLADRLHNMRTLQFMKQA 238
Query: 252 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRIT 311
K +A+ETL I+ LA RLG+W Q++A+L R+G+
Sbjct: 239 KRHKIAKETLDIFAPLAHRLGMW--------------QIKAEL-------ERLGF----- 272
Query: 312 TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSE 371
+ ++ L+E +P K++ L +S +
Sbjct: 273 ------------------MYLYPSEYEEIRQLVEKKLP-----------KYMRVLEESRQ 303
Query: 372 AQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 431
A K A L+ ++++ S +V +S+R+K LYS++ KM++
Sbjct: 304 ALKTA-------------------LQNDVILQQSV---AQVEVSARIKELYSLWKKMQQH 341
Query: 432 DVGIHKVYDARALRVVVGDKNGTLH---GPAIQC---------------CYSLLDIVHRL 473
I +YD ALRV++ K L A QC CY L IVH +
Sbjct: 342 GKDIEDIYDLVALRVLITPKPMQLECCSSDASQCNEWNRKMLETLEKSLCYYTLGIVHAM 401
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA-LEVQIRTQKMHEYAEHGLAAHWLYK 532
W P DYI PK +GYQSLHT V A LEVQIRT +MH AE+G+AAHW+YK
Sbjct: 402 WQPFPCRVKDYIAFPKENGYQSLHTTVMAGGAQAPLEVQIRTLEMHLVAEYGMAAHWMYK 461
Query: 533 ETG 535
+
Sbjct: 462 DNS 464
>gi|383784464|ref|YP_005469034.1| GTP pyrophosphokinase [Leptospirillum ferrooxidans C2-3]
gi|383083377|dbj|BAM06904.1| GTP pyrophosphokinase [Leptospirillum ferrooxidans C2-3]
Length = 751
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 208/435 (47%), Gaps = 110/435 (25%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A + +AH GQFR++G+ Y+ H ++ ILA S K ++ +LHD ++
Sbjct: 45 KIRQAYELSAKAHEGQFRRSGESYVEHPLNVAWILA-----SMKVDATCLITALLHDTLE 99
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S IE FG +V L+ GV+++ + Q T ++A + R MLL
Sbjct: 100 DTTLSSEQIESLFGSKVVSLIDGVTKIGKFH-----------FQATKAEKQAENFRKMLL 148
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M +D RV+L+KLADRLHNMRTI +L + RA+AQETL I+ LA+RLG+ +K+EL
Sbjct: 149 SMSEDIRVILVKLADRLHNMRTISSLNIDRQRAIAQETLEIYAPLANRLGIGWIKSEL-- 206
Query: 283 LCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD-EHVLSMK 341
+D SF+ D E L +K
Sbjct: 207 -------------------------------------------EDLSFSVQDRETYLDLK 223
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
+ + RR+R ++ + K+ VQ+A IA
Sbjct: 224 --------VKVSNRRRERKNYISTIVKT---------VQEALIA---------------- 250
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
++ + R K +YSI+ KM +++ ++YD +R++ K
Sbjct: 251 ------NNLQGEVQGRYKHIYSIYRKMTIQEIPFEEIYDLMGIRIITDTKLN-------- 296
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY++L ++H LW P+ G D+I PK + YQSLHT V G +G +E QIRT++MH A
Sbjct: 297 -CYAILGLLHSLWKPMAGRIKDFIAVPKSNMYQSLHTTVIGSEGIPVEFQIRTEEMHRVA 355
Query: 522 EHGLAAHWLYKETGN 536
E G+AAHW YKE +
Sbjct: 356 EEGIAAHWNYKENAD 370
>gi|423062390|ref|ZP_17051180.1| (p)ppGpp synthetase I SpoT/RelA [Arthrospira platensis C1]
gi|406716298|gb|EKD11449.1| (p)ppGpp synthetase I SpoT/RelA [Arthrospira platensis C1]
Length = 741
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/483 (31%), Positives = 219/483 (45%), Gaps = 120/483 (24%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+++ + +A FA + H GQ+RK+G+PY+ H I IL L + V AG LHD
Sbjct: 18 DNDLISRAFLFAYQLHKGQYRKSGEPYINHPIAVAGILRFLGSDTA-----MVAAGFLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
+++D + +E FG EV LV GV++LS + N + T +A + R
Sbjct: 73 IIEDTDVTPEELESHFGPEVRHLVEGVTKLS----------KFNFSNTT--ERQAENFRR 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M L M D RV+++KLADRLHNMRT+ + +K R++A ET I+ LA+RLG+ LK E
Sbjct: 121 MFLAMAQDIRVIVVKLADRLHNMRTLEFMSESKQRSIALETREIFAPLANRLGIGRLKWE 180
Query: 280 LEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 339
LEDL F ++ A R I V+ +R A+ +E
Sbjct: 181 LEDLAFKYIEPEA--------------YREIQIRVA-----DRRATREEKLAAL------ 215
Query: 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 399
DIL DR ++ S + C E +
Sbjct: 216 ----------ADILRDRMEK----------------------------SGIRCYEVTGR- 236
Query: 400 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 459
++ G+ + R K + I+ D ALR++V
Sbjct: 237 ----PKHLYGIYKKMQERHKQFHEIY--------------DIAALRLIVETN-------- 270
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
+ CY L IVH + PI G F DYI PKP+ YQSLHT V G G +EVQIRT +MH
Sbjct: 271 -EECYRALAIVHDSYRPIPGRFKDYIGLPKPNRYQSLHTGVIGNTGRPVEVQIRTVEMHH 329
Query: 520 YAEHGLAAHWLYKET-GNKLQSISSMDESD------IEASSSLSK-----DTDDHNPLDT 567
AE+G+AAHW YKET G++ ++ DE +E S L DT +N D
Sbjct: 330 VAEYGIAAHWKYKETGGSEFGKLTETDEKFTWLRQLLEWQSDLKDAQEYLDTVKNNLFDE 389
Query: 568 DLF 570
D++
Sbjct: 390 DVY 392
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+ L+ Q L N D E V V P+G++M L +G
Sbjct: 356 DEKFTWLRQLLEWQSDLKDA----QEYLDTVKNNLFD-----EDVYVFTPDGDVMALSNG 406
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+T D A + VG K VN ++V +T LK+GDIVE+
Sbjct: 407 ATTVDFAYRVHSEVGNHCKGAKVNERMVPLDTVLKNGDIVEI 448
>gi|119509915|ref|ZP_01629057.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Nodularia
spumigena CCY9414]
gi|119465381|gb|EAW46276.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Nodularia
spumigena CCY9414]
Length = 756
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 207/443 (46%), Gaps = 108/443 (24%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA + H GQ+RK+G+ Y++H + +L L G A+ + AG LHDVV+D
Sbjct: 44 IGKAFEFAYQLHEGQYRKSGELYISHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ IEE FG EV +LV GV++LS +IN T +A + R M L
Sbjct: 99 TDVTSEQIEEHFGPEVRQLVEGVTKLS----------KINFTSKT--ESQAENFRRMFLA 146
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ + + R AQ E D+
Sbjct: 147 MAQDIRVIVVKLADRLHNMRTLQYMSESSRRRSAQ--------------------ETRDI 186
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
FA L A+ MW R+ + + P E+F +HV
Sbjct: 187 -FAPL---ANRLGMW----RIKWELEDLSFKYLEP---------EAFRQIQDHV------ 223
Query: 344 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIS 403
KR LAK+++ ++ +Q AGI C++
Sbjct: 224 ------------SEKRAAREEKLAKTTDMLRER--LQQAGIH------CQD--------- 254
Query: 404 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 463
+S R K LYSI+ KM+R+ H++YD ALR++V + C
Sbjct: 255 ----------ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVQTN---------EEC 295
Query: 464 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 523
Y L +VH + PI F DYI PKP+ YQSLHT V G G LE+QIRT +MH AE+
Sbjct: 296 YRALAVVHDAFRPIPSRFKDYIGLPKPNRYQSLHTGVIGLSGRPLEIQIRTVEMHHVAEY 355
Query: 524 GLAAHWLYKETGNKLQSISSMDE 546
G+AAHW YKETG +++ DE
Sbjct: 356 GIAAHWKYKETGGSTSQLTNADE 378
>gi|376001755|ref|ZP_09779611.1| bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Arthrospira sp.
PCC 8005]
gi|375329867|emb|CCE15364.1| bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Arthrospira sp.
PCC 8005]
Length = 764
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 207/448 (46%), Gaps = 109/448 (24%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+++ + +A FA + H GQ+RK+G+PY+ H I IL L + V AG LHD
Sbjct: 41 DNDLISRAFLFAYQLHKGQYRKSGEPYINHPIAVAGILRFLGSDTA-----MVAAGFLHD 95
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
+++D + +E FG EV LV GV++LS + N + T +A + R
Sbjct: 96 IIEDTDVTPEELESHFGPEVRHLVEGVTKLS----------KFNFSNTT--ERQAENFRR 143
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M L M D RV+++KLADRLHNMRT+ + +K R++A ET I+ LA+RLG+ LK E
Sbjct: 144 MFLAMAQDIRVIVVKLADRLHNMRTLEFMSESKQRSIALETREIFAPLANRLGIGRLKWE 203
Query: 280 LEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 339
LEDL F ++ A R I V+ +R A+ +E
Sbjct: 204 LEDLAFKYIEPEA--------------YREIQIRVA-----DRRATREEKLAAL------ 238
Query: 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 399
DIL DR ++ S + C E +
Sbjct: 239 ----------ADILRDRMEK----------------------------SGIRCYEVTGR- 259
Query: 400 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 459
++ G+ + R K + I+ D ALR++V
Sbjct: 260 ----PKHLYGIYKKMQERHKQFHEIY--------------DIAALRLIVETNE------- 294
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
+C Y L IVH + PI G F DYI PKP+ YQSLHT V G G +EVQIRT +MH
Sbjct: 295 -EC-YRALAIVHDSYRPIPGRFKDYIGLPKPNRYQSLHTGVIGNTGRPVEVQIRTVEMHH 352
Query: 520 YAEHGLAAHWLYKET-GNKLQSISSMDE 546
AE+G+AAHW YKET G++ ++ DE
Sbjct: 353 IAEYGIAAHWKYKETGGSEFGKLTETDE 380
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+ L+ Q L N D E V V P+G++M L +G
Sbjct: 379 DEKFTWLRQLLEWQSDLKDA----QEYLDTVKNNLFD-----EDVYVFTPDGDVMALSNG 429
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+T D A + VG K VN ++V +T LK+GDIVE+
Sbjct: 430 ATTVDFAYRVHSEVGNHCKGAKVNERMVPLDTVLKNGDIVEI 471
>gi|162452118|ref|YP_001614485.1| GTP diphosphokinase [Sorangium cellulosum So ce56]
gi|50403843|gb|AAT76675.1| pp(p)Gpp synthetase/hydrolase [Sorangium cellulosum So ce56]
gi|161162700|emb|CAN94005.1| GTP diphosphokinase [Sorangium cellulosum So ce56]
Length = 724
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 208/453 (45%), Gaps = 112/453 (24%)
Query: 85 TFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
T +VD V T P + + + +A A++ AH GQ RK+GDPY +H I+ L
Sbjct: 5 TELVDRVR-TYQPAADVDLIARAYAYSSDAHKGQTRKSGDPYFSHPASVAAIITEL---- 59
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
K +V AG+LHDVV+D + IE FG EVA LV GV++LS IN + R
Sbjct: 60 -KLDTASVCAGLLHDVVEDTLATTTDIENSFGQEVAFLVDGVTKLSKINFASKEDR---- 114
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
+A + R ML+ M D RV+L+KL DRL NMRT
Sbjct: 115 --------QAENFRKMLVAMARDIRVLLVKLCDRLDNMRT-------------------- 146
Query: 265 CSLASRLGLWALKAELED-LCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 323
L +K E +D + +++ A LA NR+G +R + +
Sbjct: 147 --------LEFMKPEAQDRIARETMEIYAPLA------NRLGIARFKSEL---------- 182
Query: 324 ASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAG 383
+D SF + S DL + V + ++R K++H+++K
Sbjct: 183 --EDLSFRYIEPEAWS--DLSQKV-----KTTAKERDKYIHEVSK--------------- 218
Query: 384 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 443
+L G V ++ R K LYSI+ KM+ + +VYD A
Sbjct: 219 ----------------VLAGKLAEQGFAVDVTGRAKHLYSIWRKMQAQQCDFDQVYDVIA 262
Query: 444 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 503
RV+V ++ CY+ L ++H W P+ G F DY+ PKP+ YQSLHT V GP
Sbjct: 263 FRVLV---------ESVADCYATLGVIHSQWTPVPGRFKDYVALPKPNMYQSLHTTVIGP 313
Query: 504 DGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+E+QIRT +MH AE G+AAHW YKE +
Sbjct: 314 GRERIEIQIRTHEMHRVAEQGIAAHWKYKENNS 346
>gi|424869495|ref|ZP_18293198.1| GTP pyrophosphokinase [Leptospirillum sp. Group II 'C75']
gi|124514661|gb|EAY56173.1| GTP pyrophosphokinase [Leptospirillum rubarum]
gi|387220684|gb|EIJ75333.1| GTP pyrophosphokinase [Leptospirillum sp. Group II 'C75']
Length = 762
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 213/450 (47%), Gaps = 115/450 (25%)
Query: 89 DGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRA 148
+G +VT E++++A A AH GQ+R++G+ Y+ H + ILA S K
Sbjct: 47 NGTEVT-------ERLREAYRLAAEAHKGQYRRSGEAYVDHPLSVALILA-----SMKVD 94
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
++ +LHD ++D IEE+FG +V L+ GV+++ Q +
Sbjct: 95 ATCLITALLHDTLEDTDLPPDLIEEKFGKKVLTLIDGVTKIGKFQY-----------QTS 143
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
++A + R MLL M +D RV+L+KLADRLHNMRT+ +L ++ RA+AQET
Sbjct: 144 KAEKQAENFRKMLLSMSEDIRVILVKLADRLHNMRTLSSLDASRQRAIAQET-------- 195
Query: 269 SRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDE 328
L++ A LA NR+G ++ +D
Sbjct: 196 -------------------LEIYAPLA------NRLGIGWM------------KSELEDL 218
Query: 329 SFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTS 388
SF+ + + +DL V S RRK K +L +VQ A
Sbjct: 219 SFSVLEPK--TFQDLRARV------SARRKERKNYINL-----------IVQTA------ 253
Query: 389 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 448
EEAL ++ IPG + R K +YSI+ KM +++ ++YD +R++
Sbjct: 254 ----EEALR------SNGIPG---RVLGRYKHIYSIYRKMTLQEIPFDEIYDLMGIRIIT 300
Query: 449 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 508
K CY +L ++H +W PI G D+I PK + YQSLHT V GP+G +
Sbjct: 301 DTKLN---------CYGILGLLHSIWKPITGRIKDFIAVPKSNMYQSLHTTVIGPEGVPV 351
Query: 509 EVQIRTQKMHEYAEHGLAAHWLYKETGNKL 538
E QIRT++MH AE G+AAHW YKE + L
Sbjct: 352 EFQIRTEEMHRVAEEGIAAHWNYKEKADTL 381
>gi|410478730|ref|YP_006766367.1| GTP pyrophosphokinase [Leptospirillum ferriphilum ML-04]
gi|406773982|gb|AFS53407.1| GTP pyrophosphokinase [Leptospirillum ferriphilum ML-04]
Length = 762
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 208/437 (47%), Gaps = 108/437 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A AH GQ+R++G+ Y+ H + ILA S K ++ +LHD +
Sbjct: 53 ERLREAYRLAAEAHKGQYRRSGEAYVDHPLSVALILA-----SMKVDATCLITALLHDTL 107
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D IEE+FG +V L+ GV+++ Q + ++A + R ML
Sbjct: 108 EDTDLPPDLIEEKFGKKVLTLIDGVTKIGKFQY-----------QTSKAEKQAENFRKML 156
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M +D RV+L+KLADRLHNMRT+ +L ++ RA+AQET
Sbjct: 157 LSMSEDIRVILVKLADRLHNMRTLSSLDASRQRAIAQET--------------------- 195
Query: 282 DLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
L++ A LA NR+G ++ +D SF+ + + +
Sbjct: 196 ------LEIYAPLA------NRLGIGWM------------KSELEDLSFSVLEPK--TFQ 229
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
DL V S RRK K +L +VQ A EEAL
Sbjct: 230 DLRARV------SARRKERKNYINL-----------IVQTA----------EEALR---- 258
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
++ IPG + R K +YSI+ KM +++ ++YD +R++ K
Sbjct: 259 --SNGIPG---RVLGRYKHIYSIYRKMTLQEIPFDEIYDLMGIRIITDTKLN-------- 305
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY +L ++H +W PI G D+I PK + YQSLHT V GP+G +E QIRT++MH A
Sbjct: 306 -CYGILGLLHSIWKPITGRIKDFIAVPKSNMYQSLHTTVIGPEGVPVEFQIRTEEMHRVA 364
Query: 522 EHGLAAHWLYKETGNKL 538
E G+AAHW YKE + L
Sbjct: 365 EEGIAAHWNYKEKADTL 381
>gi|397569561|gb|EJK46819.1| hypothetical protein THAOC_34498 [Thalassiosira oceanica]
Length = 989
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/465 (30%), Positives = 219/465 (47%), Gaps = 97/465 (20%)
Query: 89 DGVDVTGY-----PIF------NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRIL 137
D V+V GY P N +++KA+ A AH Q RK+G+PY+ H + +L
Sbjct: 254 DDVEVEGYWDQLLPTVSYLGTENAAKIKKALRVAYCAHRPQKRKSGEPYIIHPVEVALLL 313
Query: 138 AMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR 197
S K DTV+AG+LHD V+D + IE FG EV +V G +++S + +L
Sbjct: 314 -----SGMKMDADTVMAGLLHDTVEDTDLTFEQIEAMFGTEVKNIVEGETKVSKLPKLAF 368
Query: 198 RHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVA 257
E+A +LR M + M DD R++++KLADRLHNMRT+ + PAK + ++
Sbjct: 369 ---------ADYADEQAENLRQMFIAMTDDYRIIIVKLADRLHNMRTLRHMKPAKQQKIS 419
Query: 258 QETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSP 317
+ETL I+ LA R+GLW K+ELED F + + D + + R R+ + T+ ++
Sbjct: 420 RETLDIFAPLAHRMGLWPFKSELEDTAF--MYLYPDEYTRLNQRLRLRQKKFEETLTNTV 477
Query: 318 PLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAK 377
E+T D + + D V +++ RTK L+ L E +
Sbjct: 478 NALEKTLQSDPTIQSQD-------------VEIEVVG----RTKELYSLWHKMEMKHDRN 520
Query: 378 VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHK 437
+ +T LVA + V L+ R KS
Sbjct: 521 LDH-----ITDLVA------------------LRVILTPRGKS----------------- 540
Query: 438 VYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL--WIPIDGEFDDYIVNPKPSGYQS 495
G +G CY +L +V L + P+ + DYI PKP+GYQS
Sbjct: 541 ----------KGGADGDPADSGTWLCYHVLGLVQHLPGFQPMPTKVKDYISFPKPNGYQS 590
Query: 496 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 540
LHTA+ G ++EVQIRT MH+ AE+G+A+H+ YK+ + +S
Sbjct: 591 LHTALMY-SGQSIEVQIRTAYMHQVAEYGMASHFAYKDEMKRKES 634
>gi|288958019|ref|YP_003448360.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Azospirillum sp. B510]
gi|288910327|dbj|BAI71816.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Azospirillum sp. B510]
Length = 719
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 206/438 (47%), Gaps = 109/438 (24%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++ + +A F+ +AH Q R +GDPY H + IL + +G T+ +
Sbjct: 16 PSADEDLLNRAYVFSMKAHGSQTRASGDPYFLHPLEVAGILTQMKLDAG-----TIATAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD V+D +L IE FG E+A+LV GV++LS + +N Q ++A +
Sbjct: 71 LHDTVEDTVATLEDIERVFGKEIARLVDGVTKLSRLE--------LNSEQA----KQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R ++L M +D RV+L+KLADRLHNMRT L+ L
Sbjct: 119 FRKLVLAMSEDIRVLLVKLADRLHNMRT----------------------------LFHL 150
Query: 277 KAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336
K P R +R I S PL ER
Sbjct: 151 K---------------------KPEKRRRIARETIEIYS--PLAERIG------------ 175
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAK-SSEAQKKAKVVQDAGIALTSLVACEEA 395
+ +KD L+ + ++ D R L LA+ SE + + + + +T L A
Sbjct: 176 MHKIKDELDDLAFAELNPD--ARDSILAQLARLRSEGENRVQTI------ITELRA---- 223
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L++ +P + T+S R KS YSI+ K++RK+V ++ D A R+ VG
Sbjct: 224 -----LLAAEGLP--DATVSGREKSAYSIWRKLQRKNVSFEQLSDIMAFRITVG------ 270
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
++ CY L +VH + + G F DYI PKP+GY+SLHT V GP + +EVQIRTQ
Sbjct: 271 ---SVGECYQALGLVHAHYPVVPGRFKDYISTPKPNGYRSLHTGVIGPGRNRIEVQIRTQ 327
Query: 516 KMHEYAEHGLAAHWLYKE 533
MHE AE G+AAHW YK+
Sbjct: 328 DMHEIAELGVAAHWAYKQ 345
>gi|206602535|gb|EDZ39016.1| GTP pyrophosphokinase [Leptospirillum sp. Group II '5-way CG']
Length = 762
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 208/437 (47%), Gaps = 108/437 (24%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A AH GQ+R++G+ Y+ H + ILA S K ++ +LHD +
Sbjct: 53 ERLREAYRLAAEAHKGQYRRSGEAYVDHPLSVALILA-----SMKVDATCLITALLHDTL 107
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D IEE+FG +V L+ GV+++ Q + ++A + R ML
Sbjct: 108 EDTDLPPELIEEKFGKKVLTLIDGVTKIGKFQY-----------QTSKAEKQAENFRKML 156
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M +D RV+L+KLADRLHNMRT+ +L ++ RA+AQET
Sbjct: 157 LSMSEDIRVILVKLADRLHNMRTLSSLDASRQRAIAQET--------------------- 195
Query: 282 DLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
L++ A LA NR+G ++ +D SF+ + + +
Sbjct: 196 ------LEIYAPLA------NRLGIGWM------------KSELEDLSFSVLEPK--TFQ 229
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
DL V + RRK K +L +VQ A EEAL
Sbjct: 230 DLRARV------AARRKERKNYINL-----------IVQTA----------EEALR---- 258
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
++ IPG + R K +YSI+ KM +++ ++YD +R++ K
Sbjct: 259 --SNGIPG---RVLGRYKHIYSIYRKMTMQEIPFDEIYDLMGIRIITDTKLN-------- 305
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY +L ++H +W PI G D+I PK + YQSLHT V GP+G +E QIRT++MH A
Sbjct: 306 -CYGILGLLHSIWKPITGRIKDFIAVPKSNMYQSLHTTVIGPEGVPVEFQIRTEEMHRVA 364
Query: 522 EHGLAAHWLYKETGNKL 538
E G+AAHW YKE + L
Sbjct: 365 EEGIAAHWNYKEKADTL 381
>gi|307546995|ref|YP_003899474.1| (p)ppGpp synthetase I SpoT/RelA [Halomonas elongata DSM 2581]
gi|307219019|emb|CBV44289.1| (p)ppGpp synthetase I, SpoT/RelA [Halomonas elongata DSM 2581]
Length = 711
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 220/450 (48%), Gaps = 112/450 (24%)
Query: 86 FIVDGV-DVTGYPIFNDE--QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
F +D + D G + DE QV++A +A++AH GQ R++G+PY+TH + ILA +
Sbjct: 2 FTIDDLADRLGGYLPQDEIQQVKRAFYYAEQAHDGQRRRSGEPYVTHPLAVANILANMHM 61
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+++A +LHDV++D ++ E+FG VA+LV GVS+L+ +I
Sbjct: 62 DH-----QSLMAAMLHDVIEDTGVDKEALGEQFGKPVAELVDGVSKLT----------QI 106
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+ +A + + M+L M D RV+++KLADRLHNMRT+ AL P K R +A+ET
Sbjct: 107 TFEDKAVA--QAENFQKMVLAMSRDIRVIIVKLADRLHNMRTLGALRPEKKRRIARET-- 162
Query: 263 IWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 322
L++ A +AS R+G I TI R
Sbjct: 163 -------------------------LEIYARVAS------RLG----INTI--------R 179
Query: 323 TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDA 382
+D SF +A+ P + S+R KR S+ Q++A + Q
Sbjct: 180 VELEDLSF--------------QALHP--MRSERIKRA------VASARGQRRASIRQ-- 215
Query: 383 GIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDAR 442
+ +L+K L G++ ++ R K L SI+ KMR + ++ D
Sbjct: 216 ---------IQNSLQKSLDDE-----GLKGSVVGRQKHLLSIYRKMRDQRKSFAEIMDVF 261
Query: 443 ALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG 502
R++ D + CY +L +VH L+ P+ G F DYI PK +GYQSLHT + G
Sbjct: 262 GFRIITQD---------VDTCYRILGVVHNLYKPVPGRFKDYIAIPKANGYQSLHTTLFG 312
Query: 503 PDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
G +EVQIRT++M A +G+AAHWLYK
Sbjct: 313 TGGMPIEVQIRTREMEAMANNGIAAHWLYK 342
>gi|449467867|ref|XP_004151644.1| PREDICTED: uncharacterized LOC101208449, partial [Cucumis sativus]
Length = 186
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 94/103 (91%)
Query: 45 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQV 104
HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPK+EEQPG+ ++DGVDVTGY IF D +V
Sbjct: 84 HGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKVEEQPGSLVLDGVDVTGYLIFEDTKV 143
Query: 105 QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
QKAI FAK+AHHGQ RKTGDPYLTHCIHTG+ILA L+P +G R
Sbjct: 144 QKAIEFAKKAHHGQLRKTGDPYLTHCIHTGKILAALVPPTGNR 186
>gi|159885638|dbj|BAF93196.1| putative relA/spoT homologous protein RSH2 [Hordeum vulgare]
Length = 139
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 111/150 (74%), Gaps = 20/150 (13%)
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
LHGPA + CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRT
Sbjct: 1 LHGPAARSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRT 60
Query: 515 QKMHEYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLD 566
Q+MHEYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 61 QRMHEYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP-- 112
Query: 567 TDLFQKYSSLKMGHPVIRVEGSNLLAAVII 596
KY S+K+GHPV+R++G++LLAAVI+
Sbjct: 113 ----SKYISMKVGHPVLRIDGNHLLAAVIV 138
>gi|386286490|ref|ZP_10063680.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
gi|385280640|gb|EIF44562.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
Length = 745
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/401 (32%), Positives = 190/401 (47%), Gaps = 104/401 (25%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VNQG 207
D+++A L V ++ S+ ++E +FG VAKLV GV ++ I+ R+N ++
Sbjct: 83 DSLIAATLFRAVRESRLSMSALERDFGRSVAKLVDGVLGMAAIS-------RVNAELDAP 135
Query: 208 TLGHEEAND--LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 265
LG EA +R ML+ +VDD RV LIKLA+R +R + P + R VA+E I+
Sbjct: 136 VLGQSEAQSETIRKMLVALVDDVRVALIKLAERTSAIRAVKNKPEKRYR-VAREVADIYA 194
Query: 266 SLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 325
LA RLG+ +K ELEDL F LQ A ++I ++ LD +
Sbjct: 195 PLAHRLGIGHIKWELEDLSFRYLQPLA--------------YKKIAKLLDEKRLDRQ--- 237
Query: 326 DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIA 385
+ EH ++M L EA+ +I +D R K ++ + + +Q GI
Sbjct: 238 ------HYIEHAITM--LEEALAADNIQADIAGRAKHIYSIWRK---------MQRKGIG 280
Query: 386 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 445
+ +VYD RA+R
Sbjct: 281 FS-------------------------------------------------QVYDIRAVR 291
Query: 446 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 505
V+V P + CY+ L +VH LW I EFDDYI NPK +GY+SLHTAV GPDG
Sbjct: 292 VLV---------PDTKSCYAALGLVHGLWRNIPNEFDDYIANPKENGYRSLHTAVIGPDG 342
Query: 506 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 546
LE+QIRT+ MHE AE G+ +HW+YK +S +S DE
Sbjct: 343 KVLEIQIRTRAMHEEAEFGVCSHWMYKGADKSAKSSNSYDE 383
>gi|145336732|ref|NP_564652.2| RELA/SPOT homolog 3 [Arabidopsis thaliana]
gi|4587556|gb|AAD25787.1|AC006577_23 Similar to gi|1653162 (p)ppGpp 3-pyrophosphohydrolase from
Synechocystis sp genome gb|D90911. EST gb|W43807 comes
from this gene [Arabidopsis thaliana]
gi|110742595|dbj|BAE99211.1| RSH3 [Arabidopsis thaliana]
gi|332194932|gb|AEE33053.1| RELA/SPOT homolog 3 [Arabidopsis thaliana]
Length = 715
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 203/449 (45%), Gaps = 111/449 (24%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R TGDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHD +DD+ S I FG VA LV GVS+LS QL + R N T+
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLS---QLSKLARENNTACKTVE----- 313
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L+A
Sbjct: 314 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLYA 346
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF- 333
L + + L++ A LA NR+G S + ++ F
Sbjct: 347 LPPVKRQRFAKETLEIFAPLA------NRLGIS------------SWKVKLENLCFKHLH 388
Query: 334 -DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 392
D+H M D+LE D + +++
Sbjct: 389 PDQH-HEMSDMLEDSF--------------------------------DEAMITSAIEKL 415
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
E+AL+KE SY +S R KSLYSI+ KM +K + + +++D LR++V ++
Sbjct: 416 EQALKKE---GISY-----HVVSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEK 467
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
CY L +VH+LW + G+ DYI +PK +GYQSLHT V G LEVQI
Sbjct: 468 D---------CYKALGVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQI 518
Query: 513 RTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
RT++MH AE G AAHW YKE K S
Sbjct: 519 RTKEMHLQAEFGFAAHWRYKEGDCKHSSF 547
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum]
Length = 718
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 206/449 (45%), Gaps = 111/449 (24%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LAM+ +S V AG
Sbjct: 211 HKIFCDDFVIKAFYEAEKAHRGQVRASGDPYLQHCVETAVLLAMIGANS-----TVVAAG 265
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD + I G VA LV GVS+LS +++L R N T+
Sbjct: 266 LLHDTLDDTFMTYDYIFRTLGAGVADLVEGVSKLSQLSKLA---RDFNTASKTVE----- 317
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 318 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLDA 350
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G S
Sbjct: 351 LPLAKQQRFAKETLEIFAPLA------NRLGIS--------------------------- 377
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVAC 392
+ K+ LE + F H L + +K+V+ D + +S+
Sbjct: 378 ----TWKEQLENLC-------------FKH-LNPDQHNELSSKLVKSFDEAMITSSVGKL 419
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
E+AL+ + S SY LS R KSLYSI+ KM +K + + +V+D LR++V +K
Sbjct: 420 EQALKDD---SVSYH-----VLSGRHKSLYSIYCKMLKKKLNMDEVHDIHGLRLIVENKE 471
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
CY L +VH+LW + G + DYI NPK +GYQSLHT V G LEVQI
Sbjct: 472 D---------CYKALRVVHQLWSEVPGRYKDYIANPKFNGYQSLHTVVLGEGMVPLEVQI 522
Query: 513 RTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
RT++MH AE+G AAHW YKE K S
Sbjct: 523 RTKEMHLQAEYGFAAHWRYKEGACKHSSF 551
>gi|297847822|ref|XP_002891792.1| hypothetical protein ARALYDRAFT_892466 [Arabidopsis lyrata subsp.
lyrata]
gi|297337634|gb|EFH68051.1| hypothetical protein ARALYDRAFT_892466 [Arabidopsis lyrata subsp.
lyrata]
Length = 715
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 202/447 (45%), Gaps = 107/447 (23%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R GDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRANGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHD +DD+ S I FG VA LV GVS+LS QL + R N T+
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLS---QLSKLARENNTACKTVE----- 313
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L+A
Sbjct: 314 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLYA 346
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L + + L++ A LA NR+G S
Sbjct: 347 LPPVKQQRFAKETLEIFAPLA------NRLGIS--------------------------- 373
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEE 394
S K LE + + D+ H+++ E ++ A + E+
Sbjct: 374 ----SWKVELENMCFKHLYPDQH------HEMSDMLEDSFNEAMITSA------IGKLEQ 417
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
AL+KE SY LS R KSLYSI+ KM +K + + +++D LR++V ++
Sbjct: 418 ALKKE---GISY-----HVLSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEKD- 468
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
CY L +VH+LW + G+ DYI +PK +GYQSLHT V G LEVQIRT
Sbjct: 469 --------CYKALGVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQIRT 520
Query: 515 QKMHEYAEHGLAAHWLYKETGNKLQSI 541
++MH AE G AAHW YKE K S
Sbjct: 521 KEMHLQAEFGFAAHWRYKEGDCKHSSF 547
>gi|15822693|gb|AAL03950.1| relA/spoT-like protein RSH2 [Nicotiana tabacum]
Length = 643
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 205/449 (45%), Gaps = 111/449 (24%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LAM+ +S V AG
Sbjct: 211 HKIFCDDFVIKAFYEAEKAHRGQVRASGDPYLQHCVETAVLLAMIGANS-----TVVAAG 265
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD + I G VA LV GVS+LS QL + R N T+
Sbjct: 266 LLHDTLDDTFMTYDYIFRTLGAGVADLVEGVSKLS---QLSKLARDFNTASKTVE----- 317
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 318 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLDA 350
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G S
Sbjct: 351 LPLAKQQRFAKETLEIFAPLA------NRLGIS--------------------------- 377
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVAC 392
+ K+ LE + F H L + +K+V+ D + +S+
Sbjct: 378 ----TWKEQLENLC-------------FKH-LNPDQHNELSSKLVKSFDEAMITSSVGKL 419
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
E+AL+ + S SY LS R KSLYSI+ KM +K + + +V+D LR++V +K
Sbjct: 420 EQALKDD---SVSYH-----VLSGRHKSLYSIYCKMLKKKLNMDEVHDIHGLRLIVENKE 471
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
CY L +VH+LW + G + DYI NPK +GYQSLHT V G LEVQI
Sbjct: 472 D---------CYKALRVVHQLWSEVPGRYKDYIANPKFNGYQSLHTVVLGEGMVPLEVQI 522
Query: 513 RTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
RT++MH AE+G AAHW YKE K S
Sbjct: 523 RTKEMHLQAEYGFAAHWRYKEGACKHSSF 551
>gi|260437936|ref|ZP_05791752.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
gi|292809687|gb|EFF68892.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
Length = 762
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 197/431 (45%), Gaps = 108/431 (25%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A +AH GQ RK+G+PY+ H + ILA L + +T++AGILHDV++D
Sbjct: 48 IEKAYKVADKAHSGQKRKSGEPYIIHPLCVAIILAQL-----ELDKETIIAGILHDVIED 102
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I EFG+EVA LV GV++L+ QL H +I + +A +LR M L
Sbjct: 103 TEVTYEDISREFGEEVALLVDGVTKLT---QLNYEHDKIEI--------QAENLRKMFLA 151
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M A++ +I LA RL
Sbjct: 152 M--------------------------------AKDIRVILIKLADRLH----------- 168
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
MR P ++ SR I S P+ +R + + + DL
Sbjct: 169 -----NMRT--MQYQKPEKQIEKSRETMEIYS--PIAQRLG--------ISKIKVELDDL 211
Query: 344 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIS 403
+ D+ K HDL EA++ + +VA E EK +S
Sbjct: 212 SLMYLQPDVYH------KLEHDLTLGKEARENF---------VKEIVA--EVKEK---LS 251
Query: 404 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 463
T+ G+ T+ R+K +SI+ KM +D + ++YD A+R++V I+ C
Sbjct: 252 TT---GINYTIDGRVKHFFSIYKKMVNQDKTLDQIYDLFAVRIIVD---------TIKDC 299
Query: 464 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 523
Y++L ++H ++ PI G F DYI PKP+ YQSLHT + G E+QIRT +MH AE+
Sbjct: 300 YAVLGLIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLISQTGQPFEIQIRTYEMHRTAEY 359
Query: 524 GLAAHWLYKET 534
G+AAHW YKE
Sbjct: 360 GIAAHWKYKEN 370
>gi|51893575|ref|YP_076266.1| GTP pyrophosphokinase [Symbiobacterium thermophilum IAM 14863]
gi|51857264|dbj|BAD41422.1| GTP pyrophosphokinase [Symbiobacterium thermophilum IAM 14863]
Length = 735
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 195/433 (45%), Gaps = 115/433 (26%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A AFAK+AH GQ R++G+PY+TH I I+A L +++ A +LHDV++D
Sbjct: 26 IDNAFAFAKQAHEGQCRRSGEPYITHPIAVAEIVASLELDE-----ESIAAALLHDVLED 80
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+EE FG EVA LV GVS+L + R ++ +LR M L
Sbjct: 81 CGVKYEELEERFGKEVATLVDGVSKLDRLQFTSRDEAQVE------------NLRKMFLA 128
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKAELED 282
M A++ +I LA RL + LK + D
Sbjct: 129 M--------------------------------AKDLRVILIKLADRLHNMRTLKHQPSD 156
Query: 283 LCFAVLQMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
+ Q D+ ++P +R+G S E ++
Sbjct: 157 AQVRIAQETMDI---YAPLAHRLGLS---------------------------EIKWELE 186
Query: 342 DLLEAVVPFDILS-DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKEL 400
DL F IL DR + +L + + Q++ + QD L E LEKE
Sbjct: 187 DL-----AFRILEPDRYQEMAYL----VARKRQERMAITQDLMDQL------REVLEKE- 230
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
G++ +S R K YSI+ KM R+ I ++YD A+R++V + +
Sbjct: 231 --------GIQAEISGRPKHFYSIYKKMYRQGKDISQIYDLIAIRIIVEE---------V 273
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L I+H W P+ F DYI PKP+ YQSLHT V GP G E+QIRT++MH
Sbjct: 274 KDCYAVLGIIHSHWKPLPLRFKDYIATPKPNMYQSLHTTVIGPHGEPFEIQIRTREMHRT 333
Query: 521 AEHGLAAHWLYKE 533
AE G+AAHW YKE
Sbjct: 334 AEFGVAAHWSYKE 346
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 786
+ + K++ LR++L W +++R +S K + D V V P G +
Sbjct: 350 DKEFDRKLQWLRSLLEWHQEIRDAREFVESV---KVDIFSDQV------FVFSPKGHVFS 400
Query: 787 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 828
L +G T D A V G VNG++ +T LK+GD+VE+
Sbjct: 401 LPAGGTPLDFAFAVHSDIGYRCVGAKVNGKIAPLDTALKNGDVVEI 446
>gi|303271107|ref|XP_003054915.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462889|gb|EEH60167.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 328
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 129/211 (61%), Gaps = 23/211 (10%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIP---SSGKRAVDTVVAGILHDVVDDACESLGSI 171
HHGQFR +G+PY+ HC+ RI+A L+P + K+ VD VVA ILHDVVDD ++ +
Sbjct: 1 HHGQFRNSGEPYVVHCVEAARIMAALLPPDVNGKKKYVDAVVACILHDVVDDTECAIEDV 60
Query: 172 EEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVV 231
E EFG VAKLV VS+L + ++G + EE L+ +LL MVDDPRV
Sbjct: 61 EAEFGSTVAKLVTDVSKLGN-----------DEDRGRMDTEELVKLKKLLLFMVDDPRVF 109
Query: 232 LIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV---- 287
LIK+ADRLHNMRT+YA+ P KAR VA ETL +WC ++ LGL AE+EDL FAV
Sbjct: 110 LIKVADRLHNMRTMYAVKPEKARFVANETLQVWCPVSEALGLLGANAEMEDLAFAVKDPD 169
Query: 288 -----LQMRADLASMWSPRNRVGYSRRITTI 313
+ RA L ++ S R+ S ++ I
Sbjct: 170 AFRAIINARASLNALASCRDACMRSLQLDAI 200
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 12/177 (6%)
Query: 363 LHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLY 422
+ DLA + + + + +A +L +L +C +A + L + + PG+ V ++ RLKS Y
Sbjct: 158 MEDLAFAVKDPDAFRAIINARASLNALASCRDACMRSLQLD-AIAPGLRVDITGRLKSAY 216
Query: 423 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIP 476
S KM RK + V DARALRVV+G+ GPA ++ C+ LL+ +H+L+ P
Sbjct: 217 STHLKMARKKIPFGAVCDARALRVVIGEP-----GPAPGTKDEVEACFVLLEAIHKLYRP 271
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ GE+DDY+ N K SGYQSLHTAV GPDG+ LEVQ+RT+ MH+ AE G AAHW+YK+
Sbjct: 272 VPGEYDDYVTNVKASGYQSLHTAVTGPDGALLEVQVRTRAMHDAAEFGDAAHWIYKD 328
>gi|303232508|ref|ZP_07319195.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
gi|302481392|gb|EFL44465.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
Length = 829
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 205/452 (45%), Gaps = 114/452 (25%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A FA AH Q R++G+PY+ H + ILA + D++ + ILHD V+
Sbjct: 93 RIDEAYDFASAAHKDQRRQSGEPYINHPVEVAFILAKDLHMDE----DSICSAILHDTVE 148
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D +L IEE FG V +LV GV++L+ ++ ++ ++A +LR M L
Sbjct: 149 DTSATLDDIEERFGYTVRELVDGVTKLT------------SIEVSSMDEKQALNLRKMFL 196
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D R +I LA RL
Sbjct: 197 AMSKDIR--------------------------------VIIIKLADRLH---------- 214
Query: 283 LCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 342
MR LA++ P NR + + T V +P D S S+K
Sbjct: 215 ------NMRT-LAAL--PENRRTFKAKETRDVYAPLADRLGIS-------------SIKW 252
Query: 343 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI 402
LE + + D +R + + + S AQ++ + I LE EL
Sbjct: 253 ELEDLAFLYLDHDEYQR---IARMVQQSRAQREQNITSTIHI-----------LEDEL-- 296
Query: 403 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPA 459
+ + V++ R K L+SI+ KM RKD + +YD A+RV+ VGD
Sbjct: 297 --ARVGMQGVSIQGRPKHLWSIYQKMIRKDKNFNDIYDLIAIRVLTKTVGD--------- 345
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
CYS L VH +W P+ G F DYI PKP+GY+SLHT V G D +E+QIRT +MH
Sbjct: 346 ---CYSALGSVHTIWHPLPGRFKDYIAMPKPNGYRSLHTTVIGIDARPIEIQIRTYEMHS 402
Query: 520 YAEHGLAAHWLYKETGNKLQSISSMDESDIEA 551
AE+G+AAHWLYK++G+ Q S DE +I++
Sbjct: 403 QAEYGIAAHWLYKKSGSS-QGKMSRDEKEIDS 433
>gi|168004491|ref|XP_001754945.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694049|gb|EDQ80399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 573
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 134/213 (62%), Gaps = 16/213 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA- 154
Y +F D V KA A+ AH GQFR+ GD +L+HC+ T ILA ++G +TVVA
Sbjct: 40 YKVFCDPVVVKAFRMAEEAHRGQFRRNGDTFLSHCVETALILA----ATG--VGNTVVAA 93
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
G+LHD +DD+ SL + G++VA LV+GVS+LS +QL R + EA
Sbjct: 94 GLLHDAIDDSNLSLQLLRGALGEDVASLVSGVSKLSEFSQLARDSNTVR------DPTEA 147
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+ LR M+L MVD RVVLIK+ADRLHN+RT+ ALP K +A ETL I+ LA+RLG+W
Sbjct: 148 DSLRTMILAMVD-VRVVLIKIADRLHNLRTLGALPYLKQIGIANETLEIFAPLANRLGIW 206
Query: 275 ALKAELEDLCFAVLQ--MRADLASMWSPRNRVG 305
+ KAELEDLCF L+ DL++ S R R G
Sbjct: 207 SWKAELEDLCFKCLKPVEHQDLSARLSERCREG 239
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 19/162 (11%)
Query: 383 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 441
G+ ++S+ ++AL E G++ V LS R K+LYSI+ KM +K ++ D
Sbjct: 239 GLVMSSIRDLDDALRNE---------GVQFVDLSGRPKNLYSIYKKMMKKKRTPEEILDV 289
Query: 442 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
R LR++V D+N CY L IVH+LW + G+ DYI + KP+GY+SLHT V
Sbjct: 290 RGLRLIVSDENN---------CYEALQIVHKLWKQVPGKSKDYIAHSKPNGYKSLHTVVI 340
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 543
G DG LEVQIRT KMH AE+GLAAHW YKE + + SS
Sbjct: 341 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNTQHSAFSS 382
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa]
gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 205/447 (45%), Gaps = 108/447 (24%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 225 HTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANS-----TVVAAG 279
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ S I + FG VA LV GVS+LS QL + R N T+
Sbjct: 280 LLHDTLDDSFISYDHIFKTFGAGVADLVEGVSKLS---QLSKLARENNTASKTVE----- 331
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLW 274
ADRLH M L A ARAV LI LA RL +
Sbjct: 332 --------------------ADRLHTM----FLAMADARAV-----LI--KLADRLHNMM 360
Query: 275 ALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L D V Q R +++ + I + PL R
Sbjct: 361 TL-----DALPLVKQQR--------------FAKETSEIFA--PLANRLG---------- 389
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEE 394
+ S K+ LE + + D+ K DL+ A++V A+ + + +E
Sbjct: 390 --ISSWKEQLENLCFKHLNPDQHK------DLS--------ARLVDSFDEAM--IASAKE 431
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
LEK L + LS R KSLYS + KM +K + + +++D LR++V +
Sbjct: 432 KLEKALTDE-----AISYDLSGRHKSLYSTYCKMLKKKLNMDQIHDIHGLRLIVENNED- 485
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
CY L +V RLW + G+F DYI NPK +GY+SLHT V G LEVQIRT
Sbjct: 486 --------CYRALRVVQRLWSEVPGKFKDYINNPKFNGYRSLHTVVMGEGTVPLEVQIRT 537
Query: 515 QKMHEYAEHGLAAHWLYKETGNKLQSI 541
++MH AE G AAHW YKE +K S
Sbjct: 538 REMHLQAEFGFAAHWRYKEGDSKHSSF 564
>gi|357514019|ref|XP_003627298.1| GTP pyrophosphokinase [Medicago truncatula]
gi|66947621|emb|CAJ00006.1| RelA-SpoT homolog 1 [Medicago truncatula]
gi|355521320|gb|AET01774.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 726
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 205/446 (45%), Gaps = 107/446 (23%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDDA + I FG VA LV GVS+LS++++L R + N + E
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDN-----NTASKSVE--- 321
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 322 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLDA 354
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G
Sbjct: 355 LPVAKQQRFAKETLEIFAPLA------NRLG----------------------------- 379
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEE 394
+ + KD LE + K L+ + + K + DA IA +++ E+
Sbjct: 380 --IANWKDQLENLC-----------FKHLNPVQHKELSSKLVESYDDAMIA-SAIERLEQ 425
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
AL+ E SY +S R KSLYS++ K+ +K + I ++D LR++V +
Sbjct: 426 ALKDE---GISYH-----VISGRHKSLYSVYCKILKKKLTIDDIHDIYGLRLIVDKEED- 476
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
CY L +VHRLW + G+ DYI PK +GYQSLHT V G LEVQ+RT
Sbjct: 477 --------CYKALKVVHRLWSEVHGKLKDYIRFPKFNGYQSLHTVVMGEGKVPLEVQVRT 528
Query: 515 QKMHEYAEHGLAAHWLYKETGNKLQS 540
+ MH AE G AAHW YKE +L S
Sbjct: 529 KDMHLQAEFGFAAHWRYKEDHCQLSS 554
>gi|357514023|ref|XP_003627300.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355521322|gb|AET01776.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 682
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 206/450 (45%), Gaps = 115/450 (25%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDDA + I FG VA LV GVS+LS++++L R + N + E
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDN-----NTASKSVE--- 321
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL---- 271
ADRLH M L A ARAV LI LA RL
Sbjct: 322 --------------------ADRLHTM----FLAMADARAV-----LI--KLADRLHNMM 350
Query: 272 GLWALK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 330
L AL A+ + L++ A LA NR+G
Sbjct: 351 TLDALPVAKQQRFAKETLEIFAPLA------NRLG------------------------- 379
Query: 331 TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLV 390
+ + KD LE + K L+ + + K + DA IA +++
Sbjct: 380 ------IANWKDQLENLC-----------FKHLNPVQHKELSSKLVESYDDAMIA-SAIE 421
Query: 391 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
E+AL+ E SY +S R KSLYS++ K+ +K + I ++D LR++V
Sbjct: 422 RLEQALKDE---GISY-----HVISGRHKSLYSVYCKILKKKLTIDDIHDIYGLRLIVDK 473
Query: 451 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 510
+ CY L +VHRLW + G+ DYI PK +GYQSLHT V G LEV
Sbjct: 474 EED---------CYKALKVVHRLWSEVHGKLKDYIRFPKFNGYQSLHTVVMGEGKVPLEV 524
Query: 511 QIRTQKMHEYAEHGLAAHWLYKETGNKLQS 540
Q+RT+ MH AE G AAHW YKE +L S
Sbjct: 525 QVRTKDMHLQAEFGFAAHWRYKEDHCQLSS 554
>gi|302784096|ref|XP_002973820.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
gi|300158152|gb|EFJ24775.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
Length = 542
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 124/194 (63%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D + KA A+ AH G FR++G+ YLTHC+ T A+L+ S+G A V AG
Sbjct: 10 HKVFKDPFIIKAFRLAEEAHRGHFRRSGELYLTHCVET----AILLASAGAEAT-VVAAG 64
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I FGD+VA LV GVS++S ++QL R + N+ TL EA+
Sbjct: 65 LLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARDN---NIASKTL---EAD 118
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
LR M L MVD RVVLIKLADRLHNMRT+ AL K +A ETL I +A+RLG+W+
Sbjct: 119 RLRTMFLAMVD-VRVVLIKLADRLHNMRTLEALAAEKQNRIASETLEILVPIANRLGIWS 177
Query: 276 LKAELEDLCFAVLQ 289
KAE+EDLCF L
Sbjct: 178 WKAEMEDLCFKYLN 191
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 382 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 441
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 442 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 540
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa]
gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa]
Length = 737
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 201/451 (44%), Gaps = 116/451 (25%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 227 HKIFCDDFVIKAFYEAEKAHRGQMRASGDPYLEHCVETAVLLAIIGANSS-----VVAAG 281
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ S I + FG VA LV GVS+LS QL + R N T+
Sbjct: 282 LLHDSLDDSFLSYDYIFKTFGAGVADLVEGVSKLS---QLSKLARENNTASKTVE----- 333
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL-GLW 274
ADRLH M L A ARAV LI LA RL +
Sbjct: 334 --------------------ADRLHTM----FLAMADARAV-----LI--KLADRLHNMI 362
Query: 275 ALKA----ELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 330
L A + + +Q+ A LA NR+G S
Sbjct: 363 TLDALPLVKQQRFAKETMQIFAPLA------NRLGIS----------------------- 393
Query: 331 TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLV 390
+ K+ LE + F H L A++V+ A+ +
Sbjct: 394 --------TWKEQLETLC-------------FKH-LNPDQHRHLSARLVESFDEAM--IA 429
Query: 391 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
+ +E L+K L + L R KSLYSI KM +K + + +++D LR++V +
Sbjct: 430 STKEKLDKALTDE-----AISYNLHGRHKSLYSIHCKMSKKKLNMDQIHDIHGLRLIVEN 484
Query: 451 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 510
K CY L +VH LW + G+F DYI NPK +GY+SLHT V G LEV
Sbjct: 485 KED---------CYRALRVVHCLWSEVPGQFKDYITNPKFNGYRSLHTVVMGEGTVPLEV 535
Query: 511 QIRTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
QIRT++MH AE G AAHW YKE K S
Sbjct: 536 QIRTKEMHLQAEFGFAAHWRYKEGDCKHSSF 566
>gi|7141308|gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana]
Length = 712
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 200/449 (44%), Gaps = 114/449 (25%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R TGDPYL HC+ T AML+ G + VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVET----AMLLADIGANST-VVVAG 261
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHD +DD+ S I FG VA LV G ++QL + R N T+
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEG------VSQLSKLARENNTACKTVE----- 310
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L+A
Sbjct: 311 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLYA 343
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF- 333
L + + L++ A LA NR+G S + ++ F
Sbjct: 344 LPPVKRQRFAKETLEIFAPLA------NRLGIS------------SWKVKLENLCFKHLH 385
Query: 334 -DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 392
D+H M D+LE D + +++
Sbjct: 386 PDQH-HEMSDMLEDSF--------------------------------DEAMITSAIEKL 412
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
E+AL+KE SY +S R KSLYSI+ KM +K + + +++D LR++V ++
Sbjct: 413 EQALKKE---GISY-----HVVSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNEK 464
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
CY L +VH+LW + G+ DYI +PK +GYQSLHT V G LEVQI
Sbjct: 465 D---------CYKALGVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQI 515
Query: 513 RTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
RT++MH AE G AAHW YKE K S
Sbjct: 516 RTKEMHLQAEFGFAAHWRYKEGDCKHSSF 544
>gi|302803634|ref|XP_002983570.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
gi|300148813|gb|EFJ15471.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
Length = 540
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D + KA A+ AH G FR++G+ YLTHC+ T A+L+ S+G A V AG
Sbjct: 10 HKVFKDPFIIKAFRLAEEAHRGHFRRSGELYLTHCVET----AILLASAGAEAT-VVAAG 64
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I FGD+VA LV GVS++S ++QL R + N+ TL EA
Sbjct: 65 LLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARDN---NIASKTL---EAG 118
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
LR M L MVD RVVLIKLADRLHNMRT+ AL K +A ETL I +A+RLG+W+
Sbjct: 119 RLRTMFLAMVD-VRVVLIKLADRLHNMRTLEALATEKQNRIASETLEILVPIANRLGIWS 177
Query: 276 LKAELEDLCFAVLQ 289
KAE+EDLCF L
Sbjct: 178 WKAEMEDLCFKYLN 191
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 382 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 441
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 442 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 540
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
>gi|374292006|ref|YP_005039041.1| ppGpp synthetase [Azospirillum lipoferum 4B]
gi|357423945|emb|CBS86808.1| ppGpp synthetase [Azospirillum lipoferum 4B]
Length = 719
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 201/438 (45%), Gaps = 109/438 (24%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++ + +A ++ +AH Q R +GDPY H + IL + +G T+ +
Sbjct: 16 PNADEDLLNRAYVYSMKAHGSQTRASGDPYFLHPLEVAGILTQMKLDAG-----TIATAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD V+D +L IE FG E+A+LV GV++LS + +N Q ++A +
Sbjct: 71 LHDTVEDTVATLEDIERVFGKEIARLVDGVTKLSRLE--------LNSEQA----KQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R ++L M +D RV+L+K LA RL
Sbjct: 119 FRKLVLAMSEDIRVLLVK--------------------------------LADRLH---- 142
Query: 277 KAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336
MR L + P R +R I S PL ER
Sbjct: 143 ------------NMRT-LFHLKKPEKRKRIARETIEIYS--PLAERIG------------ 175
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAK-SSEAQKKAKVVQDAGIALTSLVACEEA 395
+ +KD L+ + ++ D R L LA+ +E + + + + +T L
Sbjct: 176 MHKIKDELDDLAFAELNPD--ARDSILAQLARLRNEGENRVQTI------ITEL------ 221
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
+ELL S +P + T+S R KS YSI+ K++RK+V ++ D A R+ VG
Sbjct: 222 --RELLASEG-LP--DATVSGREKSAYSIWRKLQRKNVSFEQLSDIMAFRITVG------ 270
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
++ CY L +VH + + G F DYI PKP+GY+SLHT V GP + +EVQIRTQ
Sbjct: 271 ---SVGECYQALGVVHAHYPVVPGRFKDYISTPKPNGYRSLHTGVIGPGRNRIEVQIRTQ 327
Query: 516 KMHEYAEHGLAAHWLYKE 533
MHE AE G+AAHW YK+
Sbjct: 328 DMHEIAELGVAAHWAYKQ 345
>gi|160878706|ref|YP_001557674.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium phytofermentans ISDg]
gi|160427372|gb|ABX40935.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium phytofermentans ISDg]
Length = 813
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 198/445 (44%), Gaps = 122/445 (27%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E V+KA A AH Q RK+G+PY+ H + ILA L + +T+VAG
Sbjct: 92 HPSTDVEIVEKAYKIATFAHKDQLRKSGEPYIIHPLCVAIILAEL-----ELDKETIVAG 146
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHDVV+D ++ + +EFG+EVA LV GV++L+ QL ++ + +A
Sbjct: 147 ILHDVVEDTVLTVSELTKEFGEEVALLVDGVTKLT---QLNYSKDKVEI--------QAE 195
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L A+A++ +I LA RL
Sbjct: 196 NLRKMFL--------------------------------AMAKDIRVILIKLADRLH--- 220
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-------DDE 328
MR +P+ ++ SR I + P+ +R DD
Sbjct: 221 -------------NMRT--MQYQTPKKQIEKSRETMDIYA--PIAQRLGISMIKIELDDL 263
Query: 329 SFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTS 388
S + V K+L E I S + +R F++ +V+D G +
Sbjct: 264 SLQYLEPEVY--KELNEK-----IASKKEEREAFINS------------IVEDVGKHIAE 304
Query: 389 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 448
+ + R+K +SI+ KM + + ++YD A+R+VV
Sbjct: 305 -------------------ANISAKIDGRVKHFFSIYKKMVNQGKTLEQIYDLFAVRIVV 345
Query: 449 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 508
++ CY+ L ++H ++ PI G F DYI PKP+ YQSLHT + GP+G
Sbjct: 346 D---------TVKDCYAALGVIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPNGQPF 396
Query: 509 EVQIRTQKMHEYAEHGLAAHWLYKE 533
E+QIRT +MH AE+G+AAHW YKE
Sbjct: 397 EIQIRTFEMHRTAEYGIAAHWKYKE 421
>gi|347532608|ref|YP_004839371.1| (p)ppGpp synthetase I SpoT/RelA [Roseburia hominis A2-183]
gi|345502756|gb|AEN97439.1| (p)ppGpp synthetase I, SpoT/RelA [Roseburia hominis A2-183]
Length = 788
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 208/443 (46%), Gaps = 116/443 (26%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A+ AH GQ RK+G+PY+ H + ILA L + +T+ AG+LHDV++D
Sbjct: 59 IEKAYHVARDAHEGQTRKSGEPYIVHPLCVAIILAEL-----ELDKETIAAGLLHDVLED 113
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I+EEF +EV LV GV++L R +++ + H++ +
Sbjct: 114 TVMTADEIKEEFSEEVLLLVDGVTKL----------RHLHLTDNSHNHDQKD-------- 155
Query: 224 MVDDPRVVLIKLADRLH----NMRTIYALPPAKARAVAQETLLIWCSLASRL-GLWALKA 278
+ A+RL N+R ++ A+A++ +I LA RL + LK
Sbjct: 156 ----------RSAERLEMQAENLRKMFL-------AMAKDIRVILIKLADRLHNMRTLKY 198
Query: 279 ELEDLCFAVLQMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHV 337
+ ++ A +++ + ++ P R+G S+ + DD
Sbjct: 199 QSKE---AQIRIARETQEIYCPIAQRLGISKI------------KIELDD---------- 233
Query: 338 LSMKDLLEAVVPFDILS--DRRK--RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACE 393
LS+K LE +D++ D+RK R ++ L + A KA AGI
Sbjct: 234 LSLK-YLEPEAYYDLVRQIDQRKSVRDDYVQSLVEEVRAHIKA-----AGIV-------- 279
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
+ R K +SI+ KM +D + ++YD A+R++V
Sbjct: 280 ------------------AEIEGRAKHFFSIYKKMVNQDKTLDQIYDLFAIRIIVD---- 317
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
+++ CY+ L ++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIR
Sbjct: 318 -----SVKDCYAALGVIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIR 372
Query: 514 TQKMHEYAEHGLAAHWLYKETGN 536
T +MH AE+G+AAHW YKE N
Sbjct: 373 TYEMHRTAEYGIAAHWKYKEASN 395
>gi|168052096|ref|XP_001778487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670085|gb|EDQ56660.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 123/194 (63%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y F D V KA A+ AH GQFR+ GD +L HC+ T ILA ++G + V AG
Sbjct: 25 YKAFYDPIVVKAFRMAEEAHKGQFRRNGDMFLAHCVETALILA----ATGVGNI-VVAAG 79
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ SL + G+ VA LV GVS+LS +QL R N TL EA+
Sbjct: 80 LLHDAIDDSNLSLELLRCSLGENVASLVIGVSKLSEFSQLARD---CNTVCDTL---EAD 133
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
LR M+L MVD RVVLIK+ADRLHN+RT+ ALP K +A+ETL I+ LA+RLG+W+
Sbjct: 134 RLRTMILAMVD-VRVVLIKIADRLHNLRTLEALPSHKQIGIAKETLEIFAPLANRLGIWS 192
Query: 276 LKAELEDLCFAVLQ 289
KAE+EDLCF L+
Sbjct: 193 WKAEMEDLCFKCLK 206
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 19/162 (11%)
Query: 383 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 441
G+ ++S+ +EAL + G++ + L R K+LYS++ KM +K ++ D
Sbjct: 224 GLVMSSIRDLDEALR---------VGGVQFIDLCGRPKNLYSVYKKMMKKKRSPDEILDV 274
Query: 442 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
R LR++V D+ + CY L++VH+LW I G+ DYIV+ KP+GY+SLHT V
Sbjct: 275 RGLRLIVTDE---------ESCYQALEVVHQLWRCIPGKTKDYIVDSKPNGYKSLHTVVI 325
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 543
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + SS
Sbjct: 326 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFSS 367
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max]
Length = 715
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 202/441 (45%), Gaps = 111/441 (25%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 205 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 259
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DDA + I FG VA LV GVS+ ++ L + R N ++
Sbjct: 260 LLHDSLDDAFLTYDYIVGMFGAGVADLVEGVSK---LSHLSKLARENNTASKSVE----- 311
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 312 --------------------ADRLHTM----FLGMADARAV---LIKLADRLHNMMTLDA 344
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G S
Sbjct: 345 LPVAKRQRFAKETLEIFAPLA------NRLGIS--------------------------- 371
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVAC 392
+ K+ LE + F H L S + +K+V+ D + +++
Sbjct: 372 ----TWKEQLENLC-------------FKH-LNPSHHEELSSKLVESYDDAMITSAIERL 413
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
EEAL+ E IS + I G R KSLYS++ KM +K + I ++D LR++V DK
Sbjct: 414 EEALKDEG-ISYNVISG-------RHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIV-DKE 464
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
+ CY L +VHRLW + G+ DYI PK +GYQSLHT V G LEVQI
Sbjct: 465 --------EDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQI 516
Query: 513 RTQKMHEYAEHGLAAHWLYKE 533
RT+ MH AE G AAHW YKE
Sbjct: 517 RTKDMHLQAEFGFAAHWRYKE 537
>gi|168066267|ref|XP_001785062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663355|gb|EDQ50123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 130/213 (61%), Gaps = 16/213 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ +F D V KA A+ AH GQ R+ GD +L+HC+ T LA + S+ + AG
Sbjct: 108 FNVFYDPVVVKAFRMAEEAHRGQVRRNGDMFLSHCVETALTLAAIGVSN-----TVIAAG 162
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD +DD+ L + + G++VA LV GVS+LS +QL R + T+G+ EA
Sbjct: 163 LLHDAIDDSNFCLKRLRDTLGEDVANLVIGVSKLSEFSQLAR-------DSNTVGNPMEA 215
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+ LR M+L +VD RVVL+K+ADRLHN+RT+ ALP K +A ETL I+ LA+RLG+W
Sbjct: 216 DRLRTMILALVD-VRVVLVKIADRLHNLRTLEALPSHKQIGIATETLGIFAPLANRLGIW 274
Query: 275 ALKAELEDLCFAVLQMR--ADLASMWSPRNRVG 305
KAELEDLCF L+ DL+ S R R G
Sbjct: 275 RWKAELEDLCFKYLKPEDHQDLSMRLSERCREG 307
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 21/161 (13%)
Query: 383 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 441
G+ ++S+ +EAL I G+E + L R K+LYS++ KM +K + ++ D
Sbjct: 307 GLVMSSIKNLDEALR---------IRGVEFIDLCGRPKNLYSVYKKMMKKKRSLEEILDV 357
Query: 442 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
LR++V D+N CY L+IVH+L +P G+ DYIV+ KP+GY+SLHT V
Sbjct: 358 IGLRLIVSDENS---------CYEALEIVHQLCMP--GKSKDYIVDSKPNGYKSLHTVVI 406
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 542
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + S
Sbjct: 407 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFS 447
>gi|297834248|ref|XP_002885006.1| hypothetical protein ARALYDRAFT_897663 [Arabidopsis lyrata subsp.
lyrata]
gi|297330846|gb|EFH61265.1| hypothetical protein ARALYDRAFT_897663 [Arabidopsis lyrata subsp.
lyrata]
Length = 714
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 117/193 (60%), Gaps = 12/193 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T +LA + SS VVAG
Sbjct: 208 HKIFKDESVIKAFYEAEKAHRGQMRASGDPYLQHCVETAMLLANIGASS-----TVVVAG 262
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ S I FG VA LV GVS+LS +++L R N EA+
Sbjct: 263 LLHDTMDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARE------NNTACKTVEAD 316
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM+T+YAL P K + A+ETL I+ LA+RLG+
Sbjct: 317 RLHTMFLAMAD-ARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGIST 375
Query: 276 LKAELEDLCFAVL 288
K +LE+LCF L
Sbjct: 376 WKVQLENLCFKHL 388
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 90/161 (55%), Gaps = 17/161 (10%)
Query: 381 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYD 440
D + +++ E+AL+KE SY L R KSLYSI+SKM +K + + +++D
Sbjct: 405 DEAMITSAIEKLEQALKKE---GISYH-----VLCGRHKSLYSIYSKMLKKKLTVDEIHD 456
Query: 441 ARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV 500
LR++V D G CY L +VH LW + G+ DYI +PK +GYQSLHT V
Sbjct: 457 IHGLRLIV-DNEGD--------CYKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTVV 507
Query: 501 QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
LEVQIRTQ+MH AE G AAHW YKE K S
Sbjct: 508 MDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKEGDCKYSSF 548
>gi|260892286|ref|YP_003238383.1| (p)ppGpp synthetase I SpoT/RelA [Ammonifex degensii KC4]
gi|260864427|gb|ACX51533.1| (p)ppGpp synthetase I, SpoT/RelA [Ammonifex degensii KC4]
Length = 710
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 121/193 (62%), Gaps = 17/193 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N+ ++KA FA+ H GQ R +G+P+L+H + RILA L + +T+VAG+
Sbjct: 16 PGVNEALLRKAFDFAQAKHAGQRRFSGEPFLSHPVAVARILAELELDT-----ETIVAGL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D +L IE EFG E+A LV GV++LS + + ++A +
Sbjct: 71 LHDVVEDTGTTLEEIEHEFGAEIAALVDGVTKLS------------RLQFRSQEEQQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR M + M D RVVLIKLADRLHN+RT+ LPP K RA+A+ETL I+ LA RLG++ L
Sbjct: 119 LRKMFVAMAKDVRVVLIKLADRLHNLRTLQYLPPEKQRAIAKETLEIFAPLAHRLGIYRL 178
Query: 277 KAELEDLCFAVLQ 289
K ELEDL F L+
Sbjct: 179 KWELEDLAFRYLE 191
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ L R K+LYSI+ KM R ++YD +R +V ++ CY++L
Sbjct: 228 GIKAELMGRPKNLYSIYQKMLRDGKEYSEIYDRTGIRALV---------ETVRDCYAVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE+G+AAH
Sbjct: 279 VVHTLWKPVPGRFKDYIAMPKENMYQSLHTTVIGPQGEPVEVQIRTYEMHRTAEYGIAAH 338
Query: 529 WLYKETGNKLQSISS 543
W YKE + + + +
Sbjct: 339 WRYKEGQTRDKQLEA 353
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 783
+ + + K LR +L W +++R + + + K+ V +VV V P G+
Sbjct: 346 TRDKQLEAKFAWLRELLEWVQEMRDAREFMERLKID----------VFSDVVFVFTPKGD 395
Query: 784 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
++ L +G+ D A + VG K VNG+LV + +LK GDIVE+
Sbjct: 396 VVELPAGAVPLDFAYRIHTEVGHRYKGAKVNGRLVPLDYQLKTGDIVEI 444
>gi|15231772|ref|NP_188021.1| RelA-SpoT like protein RSH2 [Arabidopsis thaliana]
gi|11994378|dbj|BAB02337.1| unnamed protein product [Arabidopsis thaliana]
gi|332641938|gb|AEE75459.1| RelA-SpoT like protein RSH2 [Arabidopsis thaliana]
Length = 709
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 118/193 (61%), Gaps = 12/193 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IFNDE V KA A++AH GQ R + DPYL HC+ T AML+ + G + VVAG
Sbjct: 203 HKIFNDESVIKAFYEAEKAHRGQMRASRDPYLQHCVET----AMLLANIGANST-VVVAG 257
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ S I FG VA LV GVS+LS +++L R N EA+
Sbjct: 258 LLHDTIDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARE------NNTACKTVEAD 311
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM+T+YAL P K + A+ETL I+ LA+RLG+
Sbjct: 312 RLHTMFLAMAD-ARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGIST 370
Query: 276 LKAELEDLCFAVL 288
K +LE+LCF L
Sbjct: 371 WKVQLENLCFKHL 383
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L R KSLYSI+SKM +K + + +++D LR++V D G CY L +VH L
Sbjct: 425 LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIV-DNEGD--------CYKALGVVHSL 475
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G+ DYI +PK +GYQSLHT V LEVQIRTQ+MH AE G AAHW YKE
Sbjct: 476 WSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKE 535
Query: 534 TGNKLQSI 541
G K S
Sbjct: 536 GGCKYSSF 543
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus]
gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus]
Length = 733
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 200/453 (44%), Gaps = 119/453 (26%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 231 HKIFCDEFVVKAFFEAEKAHRGQLRASGDPYLEHCVETAVMLALVGANS-----TVVAAG 285
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ + I FG EVA LV GV S ++ L + R + + T+
Sbjct: 286 LLHDTIDDSFVTHDYILGTFGAEVADLVEGV---SKLSHLSKLAREHDTAERTVE----- 337
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV LA RL
Sbjct: 338 --------------------ADRLHTM----FLAMADARAVL-------VKLADRL---- 362
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDE 335
+ T+ + PP+ ++ +
Sbjct: 363 --------------------------------HNMMTLDALPPIKQQRFA---------- 380
Query: 336 HVLSMKDLLEAVVPFD------ILSDRRKRTKFLH-DLAKSSEAQKKAKVVQDAGIALTS 388
K+ +E VP ++ + F H +L + + K + D I ++
Sbjct: 381 -----KETMEIFVPLANRLGIYTWKEQLENMCFKHLNLEQHEDLSSKLLGLYDEAIIFSA 435
Query: 389 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 448
E AL K+ IS + G R KS+YSI KM +K++ +++++D LR++V
Sbjct: 436 TQKLERAL-KDKGISYHVVTG-------RHKSVYSIHRKMLKKNLTVNEIHDIHGLRLIV 487
Query: 449 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 508
++ + CY L IVH+LW + G+ DYI PK +GYQS+HT V+G L
Sbjct: 488 ENE---------EDCYEALRIVHQLWPNVPGKLKDYISKPKLNGYQSIHTVVRGEGDVPL 538
Query: 509 EVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSI 541
EVQIRT++MH AE G AAHW YKE +K S
Sbjct: 539 EVQIRTKEMHLQAEFGFAAHWRYKEGDSKHSSF 571
>gi|414887563|tpg|DAA63577.1| TPA: hypothetical protein ZEAMMB73_929416 [Zea mays]
Length = 614
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 125/206 (60%), Gaps = 13/206 (6%)
Query: 83 PGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
P ++ G + + IF DE V++A A+ AH GQ R +GDPYL HC+ T +LA L
Sbjct: 116 PSAALIAGAQ-SRHAIFRDELVRRAFTAAEAAHRGQVRASGDPYLQHCVETAALLAELGA 174
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
V AG+LHD VDDA G I E FG VA LV GVS LS++++L RR
Sbjct: 175 GPA-----VVAAGLLHDTVDDAGLGYGFISEHFGAGVADLVKGVSNLSHLSKLARR---- 225
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
N +EA+ LR++ L M +D R VLIKLADRLHNMRT+ +L K ++VA+ETL
Sbjct: 226 --NDTASRIDEADRLRIVFLAM-EDARAVLIKLADRLHNMRTLDSLSKTKQQSVAKETLE 282
Query: 263 IWCSLASRLGLWALKAELEDLCFAVL 288
I+ LA++LG+ K +LE+LCF L
Sbjct: 283 IFAPLANQLGILNWKEQLENLCFKYL 308
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R KS+YSI+ KM RK + + K+YD +RV++ +K C++ L+I+H LW
Sbjct: 353 RHKSMYSIYRKMARKKLVMDKIYDIHGVRVILENKAD---------CFATLEIIHHLWPR 403
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
I G+F DYI +PKP+ YQSLHT V LE+QIRT+ MH AE G+AAHW YKE
Sbjct: 404 IPGKFKDYINSPKPNRYQSLHTVVLTEQTLPLEIQIRTRDMHLQAEFGIAAHWRYKE 460
>gi|320161070|ref|YP_004174294.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
gi|319994923|dbj|BAJ63694.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
Length = 733
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 154/277 (55%), Gaps = 22/277 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVA 154
Y + E + KA A++AH GQ R +G+PY+THC ILA + +P + V+A
Sbjct: 14 YSAADREMICKAYQLAEKAHEGQKRLSGEPYITHCEAVAAILADIRVPPT------LVIA 67
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN-VNQGTLGHEE 213
G+LHD V+D +L I EFGDE+AKLV GV++L+++ ++ R + + V + L E
Sbjct: 68 GLLHDTVEDTPITLEDIRREFGDEIAKLVDGVTKLTHLPRVSRDDQYASEVEEYGLALET 127
Query: 214 AND----------LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 263
D LR L M +D RVVLIKLADRLHNMRT+ +P K R +AQETL I
Sbjct: 128 TEDTRRKQLAQETLRKTFLAMGEDIRVVLIKLADRLHNMRTLGYMPENKRRRIAQETLDI 187
Query: 264 WCSLASRLGLWALKAELEDLCFAVL--QMRADLASMWSPRNRVGYSRRITTIVSSPPLDE 321
+ LA+RLG+W +K ELEDL F + + ++A + + + R ++I I+S
Sbjct: 188 FAPLANRLGIWQIKWELEDLAFRYVNPEKYKEIAELLA-QKRADREKQIQEIISRLRTIL 246
Query: 322 RTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 357
A T +H+ S+ K ++E FD L D R
Sbjct: 247 EQAGIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLR 283
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI+ KM K + D R +R++V P Q CY+ L
Sbjct: 250 GIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLRGVRLIV---------PTTQDCYAALG 300
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W PI EFDDYI PK + YQSLHTAV DG LEVQIRT +M + AE+G+AAH
Sbjct: 301 IIHTHWRPIPHEFDDYIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAH 360
Query: 529 WLYKETGNKLQS 540
W YKE KL+
Sbjct: 361 WRYKEKHGKLEE 372
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 687 HLTEEEESEYWAVVSAVF--EGKPVDSVVSRRSSDSVAPT-------------SMEASIN 731
++ +++ Y ++ +AV +GKP++ + D A +E
Sbjct: 316 YIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAHWRYKEKHGKLEEDYE 375
Query: 732 NKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGS 791
+V LLR ++ W +++ A G + + D V V P G+I+ L GS
Sbjct: 376 QRVNLLRRLMDWRQEVTDAAEFMD---GVRTDVFKDRVY------VFTPKGDIIDLPQGS 426
Query: 792 TAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
T D A ++G + VNG+LV + ELK GD VE+
Sbjct: 427 TPIDFAYHVHTEIGHRCRGAKVNGKLVTLDYELKTGDQVEI 467
>gi|24059853|dbj|BAC21321.1| putative RSH, disease resistance-related protein [Oryza sativa
Japonica Group]
Length = 589
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 119/193 (61%), Gaps = 12/193 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V++A A+ AH GQ R +GDPYL HC+ T +LA L V AG
Sbjct: 102 HAIFRDELVRRAFYAAEAAHRGQMRASGDPYLQHCVETAALLAELGAGPA-----VVAAG 156
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDDA GS+ +FG VA LV GVS LS++++L RR N +EA+
Sbjct: 157 LLHDTVDDAGLGYGSLSVQFGAGVADLVKGVSNLSHLSKLARR------NDTASRVDEAD 210
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
LR + L M +D R VLIKLADRLHNMRT+ +LP K + A+ETL I+ LA++LG+
Sbjct: 211 KLRTVFLAM-EDARAVLIKLADRLHNMRTLDSLPKVKQQCFAKETLEIFAPLANQLGILN 269
Query: 276 LKAELEDLCFAVL 288
K +LE+LCF L
Sbjct: 270 WKEQLENLCFKYL 282
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 12/135 (8%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+S R KS+YSI+SKM +K + + ++YD +RV++ +K C++ L+IVH
Sbjct: 323 TISGRNKSMYSIYSKMAKK-LDMDEIYDIHGVRVILDNKAD---------CFTTLEIVHH 372
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YK
Sbjct: 373 LWPRIPGKFKDYINSPKPN-YQSLHTVVLSEETLPLEIQIRTRDMHLQAEFGIAAHWRYK 431
Query: 533 E-TGNKLQSISSMDE 546
E N S+ M E
Sbjct: 432 EAVRNCCSSVPEMVE 446
>gi|347730539|gb|AEP20477.1| RelA/SpoT-like protein [Quercus suber]
Length = 506
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 202/446 (45%), Gaps = 109/446 (24%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF ++ V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG+L
Sbjct: 1 IFCEDFVVKAFYEAEKAHRGQMRASGDPYLQHCVETAVMLALIGANST-----VVAAGLL 55
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ + + FG VA LV GVS+LS L + R N T+
Sbjct: 56 HDTLDDSFMNYDYVFGTFGAGVADLVEGVSKLS---HLSKLARDNNTANKTVE------- 105
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
ADRLH M L A ARAV + + L + + L AL
Sbjct: 106 ------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLDALP 140
Query: 278 -AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336
A+ + L++ A LA NR+G S
Sbjct: 141 PAKQQRFAKETLEIFAPLA------NRLGIS----------------------------- 165
Query: 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 396
S KD LE + F H L + +K+V+ A+ + + E L
Sbjct: 166 --SWKDQLENLC-------------FKH-LHPDQHEELSSKLVESFDEAM--ITSATEKL 207
Query: 397 EKELLI-STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
++ L S SY LS R KSLYSI+SKM +K + + +++D LR++V ++
Sbjct: 208 KQALKAKSVSY-----QDLSGRHKSLYSIYSKMLKKKLTMDEIHDIHGLRLIVDNEED-- 260
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
CY L +VH+LW + G+ DYI +PK +GY+SLHT V LEVQIRT+
Sbjct: 261 -------CYKALRVVHQLWPEVPGKLKDYISHPKFNGYRSLHTVVMDEGMVPLEVQIRTR 313
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSI 541
+MH AE G AAHW YKE K S
Sbjct: 314 EMHLQAEFGFAAHWRYKEGDCKHPSF 339
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max]
Length = 714
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 146/441 (33%), Positives = 201/441 (45%), Gaps = 111/441 (25%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 204 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 258
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DDA + I FG VA LV GV S ++ L + R N ++
Sbjct: 259 LLHDSLDDAFLTYDYIVGVFGTGVADLVEGV---SKLSHLSKLARENNTASKSVE----- 310
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 311 --------------------ADRLHTM----FLGMADARAV---LVKLADRLHNMMTLDA 343
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G S
Sbjct: 344 LPGAKQQRFAKETLEIFAPLA------NRLGIS--------------------------- 370
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ--DAGIALTSLVAC 392
+ K+ LE + F H L S + +K+V+ D + +++
Sbjct: 371 ----TWKEQLENLC-------------FKH-LNPSQHEELSSKLVESYDDAMITSAIERL 412
Query: 393 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
E+AL+ E IS + I G R KSLYSI+ KM +K + I ++D LR++V DK
Sbjct: 413 EQALKDEG-ISYNVISG-------RHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIV-DKE 463
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
+ CY L +VHRLW + G+ DYI PK +GYQSLHT V G LEVQI
Sbjct: 464 --------EDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQI 515
Query: 513 RTQKMHEYAEHGLAAHWLYKE 533
RT+ MH A+ G AAHW YKE
Sbjct: 516 RTKDMHLQADFGFAAHWRYKE 536
>gi|427825820|ref|ZP_18992882.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
gi|410591085|emb|CCN06182.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
Length = 737
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 200/451 (44%), Gaps = 98/451 (21%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++ LASRL AE +
Sbjct: 147 LAMAADLRIVLMR--------------------------------LASRLQSLRWHAETK 174
Query: 282 DLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMK 341
C A G++R + + PL R + +K
Sbjct: 175 TPCAA------------------GFARETLDLYT--PLANRLG------------IWQLK 202
Query: 342 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 401
+E + F L R R + H L ++ +V ++A IA ++ +EAL +
Sbjct: 203 WEMEDLA-FRFLEPERYR-QIAHLL-------EEKRVEREAFIA-EAIARMQEALARA-- 250
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++
Sbjct: 251 -------GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VR 294
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY+ L +VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++A
Sbjct: 295 ACYTALGLVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFA 354
Query: 522 EHGLAAHWLYKETGNKLQSISSMDESDIEAS 552
E+G+AAHW YKE G + +++ E D + S
Sbjct: 355 EYGMAAHWRYKEAGARGGQVAASSEYDRQLS 385
>gi|284105197|ref|ZP_06386190.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Poribacteria sp. WGA-A3]
gi|283830148|gb|EFC34409.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Poribacteria sp. WGA-A3]
Length = 728
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 17/197 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP ++ +++A AF+ +AH GQ R++G+PYL H + IL L K V +VAG
Sbjct: 20 YPEADEALLRRAYAFSAKAHEGQTRRSGEPYLQHPVAVAGILTFL-----KLDVTAIVAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D + ++ FG EVA LV GV++ I Q+ R T ++A
Sbjct: 75 LLHDTLEDTVATQEELQTHFGHEVAHLVEGVTK---IGQIPFR---------TYEEKQAE 122
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R MLL M DD RVV IKLADRLHNMRT+ LP K + +AQETL I+ LA+RLG+
Sbjct: 123 NFRKMLLSMADDIRVVFIKLADRLHNMRTLGHLPEDKQKQIAQETLEIYSPLANRLGMSW 182
Query: 276 LKAELEDLCFAVLQMRA 292
LK ELEDLCF L+ A
Sbjct: 183 LKQELEDLCFQYLKTEA 199
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 15/173 (8%)
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
++ + +PG V R K LYSI KM + + +V+D A+R++ G K+
Sbjct: 229 LAAAELPGHVV---GRPKHLYSIHQKMESQGITFEEVHDLVAIRIITGTKSN-------- 277
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY++L +VH LW P+ G F DYI P+ + YQSLHT V GP G +E QIRT++MH A
Sbjct: 278 -CYTILGLVHSLWPPVPGRFKDYIATPRTNLYQSLHTTVLGPQGDHVEFQIRTEEMHRLA 336
Query: 522 EHGLAAHWLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 571
E+G+AAHW YKE ++ + + S +E LS + + + DLF
Sbjct: 337 EYGVAAHWRYKEQVKVDDRDEKVFSWLRQFVEWHKDLSDNRQFMDSVKLDLFH 389
>gi|121535597|ref|ZP_01667404.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
gi|121305837|gb|EAX46772.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
Length = 735
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 120/190 (63%), Gaps = 21/190 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA AFA AH GQ+R +G+ Y+TH + +ILA L +D T+ AG+LHD
Sbjct: 26 ELVQKAYAFAGEAHRGQYRVSGEEYITHPLGVAKILADL-------QIDALTISAGLLHD 78
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
VV+D +L IE++FG E+A LV GV++LS + + +++ R
Sbjct: 79 VVEDTPVTLEEIEKQFGKEIAMLVDGVTKLSRMEYKSKEEQQLE------------SYRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M L M D RVVLIKLADRLHNMRT+ +PPAK + +A+ETL I+ LA+RLG++++K E
Sbjct: 127 MFLAMAKDIRVVLIKLADRLHNMRTLKYMPPAKQKEIARETLEIFAPLANRLGIFSIKWE 186
Query: 280 LEDLCFAVLQ 289
LEDL F L+
Sbjct: 187 LEDLAFRFLE 196
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM++ + + ++YD A+RV+V I+ CY+ L
Sbjct: 233 GIKAEIQGRPKHFYSIYKKMQKDNKDLSEIYDLSAVRVIVD---------TIKDCYAALG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PK + YQSLHT V G G LE+QIRT +MH +E+G+AAH
Sbjct: 284 IVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVIGLQGQPLEIQIRTVEMHRTSEYGIAAH 343
Query: 529 WLYKETGN 536
W YKE G
Sbjct: 344 WRYKEGGK 351
>gi|7141306|gb|AAF37282.1|AF225703_1 RSH2 [Arabidopsis thaliana]
Length = 710
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 117/193 (60%), Gaps = 12/193 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IFNDE V KA A++AH GQ R + DPYL HC+ T AML+ + G + VVAG
Sbjct: 203 HKIFNDESVIKAFYEAEKAHRGQMRASRDPYLQHCVET----AMLLANIGANST-VVVAG 257
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDD+ S I FG VA LV GVS+LS +++L R N EA+
Sbjct: 258 LLHDTVDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARE------NNTACKTVEAD 311
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM+T+YAL P K + A+ETL I+ LA+ LG+
Sbjct: 312 RLHPMFLAMAD-ARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANCLGIST 370
Query: 276 LKAELEDLCFAVL 288
K +LE+LCF L
Sbjct: 371 WKVQLENLCFKHL 383
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L R KSLYSI+SKM +K + + +++D LR++V D G CY L +VH L
Sbjct: 425 LCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIV-DNEGD--------CYKALGVVHSL 475
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G+ DYI +PK +GYQSLHT V LEVQIRTQ+MH AE G AAHW YKE
Sbjct: 476 WSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKE 535
Query: 534 TGNKLQSI 541
G K S
Sbjct: 536 GGCKYSSF 543
>gi|255080932|ref|XP_002504032.1| predicted protein [Micromonas sp. RCC299]
gi|226519299|gb|ACO65290.1| predicted protein [Micromonas sp. RCC299]
Length = 1340
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 190/386 (49%), Gaps = 44/386 (11%)
Query: 335 EHVLSMKDLLEAVVPFDIL--SDRRKRTKFLHDLAKSSEAQKKAK-------VVQDAGI- 384
E +K LL V PFD+L S+R RT A + + A V A +
Sbjct: 577 EEQEELKALLACVPPFDLLQASERNSRTAAAAAAAMMAADEATAATAADGRPTVGGASLD 636
Query: 385 -ALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 443
+L SL C+ + L + S PG+ V ++ RLKS +S KMRRK++ +V DARA
Sbjct: 637 ASLRSLRQCQATTMRSLQLD-SLAPGLRVEITGRLKSAHSTHLKMRRKNIDFGQVCDARA 695
Query: 444 LRVVVGDKNGTLHGPA--IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 501
LR+V+G+ G G ++ CY++++ +H+L+ + GE+DDY+ N K SGYQSLHTAV
Sbjct: 696 LRIVIGEP-GEAPGTKDEVEACYAVVNAIHKLYRAVPGEYDDYVANKKRSGYQSLHTAVT 754
Query: 502 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI-----------E 550
GPDG+ LE Q+RT+ MHE AE G AAHWLYK+ N ++ + DES I
Sbjct: 755 GPDGALLEFQVRTRAMHEAAEFGDAAHWLYKDFINAVKRRPN-DESAIGGDGGGGGPEDV 813
Query: 551 ASSSLSKDTDDHNPL-DTDLFQKYSSLKMGHPVIRV------EGSNLLAAVIIRVEKGGR 603
+ +P +T++ + Y +G PV V G L+A ++ +G R
Sbjct: 814 DVVAAGVARARASPTAETNVDRSY----VGQPVQIVWDVGTSGGGGRLSAGVVCFAEGSR 869
Query: 604 ELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEW----WCQPGHGDWCTCLE 659
+V G + V + + W A L++ A D +P +
Sbjct: 870 IHVVEPRRGDVLAPGVGSTGLA-ETAEWVAMG-LHRDALDRAVRANRVEPRQNGPGYLVL 927
Query: 660 KYTLCRDGMYHKQDQFGRLLPTFIQI 685
++ LC DG +HK D F R L T ++
Sbjct: 928 EFALCSDGRWHKVDAFDRKLATTAEL 953
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 5/124 (4%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSG 145
++ GVD + YPIF ++ +A FA+R HHGQ+R++G+PY+THC+ RILA L+P
Sbjct: 159 IVLCGVDCSAYPIFRHPKIVRAALFAERWHHGQYRRSGEPYVTHCVEAARILAALLPQRA 218
Query: 146 -----KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 200
++ VD V A ILHDVVDD + + +FG VAKLV VS L + Q+LRR++
Sbjct: 219 AERGERKYVDAVAACILHDVVDDTECDVEDVRAQFGSRVAKLVQDVSTLGKLPQILRRYQ 278
Query: 201 RINV 204
R +V
Sbjct: 279 RRSV 282
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 64/83 (77%)
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
GT+ EE LR +LL MVDDPRV LIK+ADRLHNMRT+YA+ AK++ VA ETL +WCS
Sbjct: 350 GTMELEELAKLRKLLLVMVDDPRVFLIKIADRLHNMRTMYAVNSAKSKFVANETLQVWCS 409
Query: 267 LASRLGLWALKAELEDLCFAVLQ 289
A +LG++ KAE+EDL FAV+
Sbjct: 410 FAEQLGMFGAKAEMEDLSFAVVN 432
>gi|312135681|ref|YP_004003019.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor owensensis
OL]
gi|311775732|gb|ADQ05219.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor owensensis
OL]
Length = 726
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKHHEGQARSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL IE EFG E+A+LV GV++L + + R +A + R ML+
Sbjct: 83 TSASLEDIEREFGKEIAELVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIEIYAPLAHRLGISKIKWELEDL 190
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y +RI +++S
Sbjct: 191 SLRYLDPEGYYDLVEKIAKKRVEREEYIKRIISLISE 227
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|406936392|gb|EKD70123.1| hypothetical protein ACD_46C00628G0005 [uncultured bacterium]
Length = 731
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 113/186 (60%), Gaps = 17/186 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FAK AH Q R TGDPY+TH + ILA + + T++A ILHDVV+
Sbjct: 41 KVEEAYLFAKEAHGSQTRHTGDPYITHPVAVAEILAQM-----RMDPPTIMAAILHDVVE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D I E+FG EV+ LV GV++L+ ++ +A + R M++
Sbjct: 96 DTPVKQAEIAEKFGQEVSDLVDGVTKLT------------QIHFDNYAQAQAENFRKMVM 143
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADRLHNMRTIYALPP K R ++ ETL I+ +A+RLG+ A + ELED
Sbjct: 144 AMASDIRVILVKLADRLHNMRTIYALPPHKRRRISLETLEIFSPIANRLGMHAFRVELED 203
Query: 283 LCFAVL 288
L FA +
Sbjct: 204 LGFATM 209
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
TLS R K +YSI+ KM +K + ++ D R++V DK + CY +L ++H
Sbjct: 252 TLSGRGKHVYSIYKKMLQKHLSFSEIMDVYGFRIIV-DK--------VDTCYRVLGVLHN 302
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
L+ PI F DYI PK +GYQSLHT + GP G +EVQIRT++MH+ AE+G+AAHWLYK
Sbjct: 303 LFKPITQRFKDYIAIPKANGYQSLHTTLFGPYGVPIEVQIRTEEMHKMAENGIAAHWLYK 362
>gi|242050856|ref|XP_002463172.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
gi|241926549|gb|EER99693.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
Length = 583
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 12/193 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V++A A A+ AH GQ R +GDPYL HC+ T +LA + V AG
Sbjct: 96 HAIFRDELVRRAFAAAEAAHRGQVRASGDPYLQHCVETAALLAEIGAGPA-----VVAAG 150
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDDA G I E FG VA LV GVS+LS++++L RR N +EA+
Sbjct: 151 LLHDTVDDAGLGYGFISEHFGAGVADLVKGVSKLSHLSKLARR------NNTASRIDEAD 204
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
LR++ L M +D R VLIKLADRLHNMRT+ +LP K ++ A+ETL I+ LA++LG+
Sbjct: 205 RLRIVFLAM-EDARAVLIKLADRLHNMRTLDSLPKNKQQSFAKETLEIFAPLANQLGILN 263
Query: 276 LKAELEDLCFAVL 288
K +LE+LCF L
Sbjct: 264 WKEQLENLCFKYL 276
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 11/132 (8%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R KSLYSI+SKM RK + + ++YD +RV++ +K C++ L+I+H LW
Sbjct: 321 RHKSLYSIYSKMARKKLVMDEIYDIHGVRVILENKAD---------CFAALEIIHHLWPR 371
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YKE
Sbjct: 372 IPGKFKDYINSPKPNRYQSLHTVVLTEETLPLEIQIRTRDMHLQAEFGIAAHWRYKEVAA 431
Query: 537 K--LQSISSMDE 546
+ S+S M E
Sbjct: 432 RSCCTSVSEMVE 443
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum]
Length = 729
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 200/446 (44%), Gaps = 107/446 (23%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 219 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 273
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DDA + I FG VA L V +S ++ L + R N ++
Sbjct: 274 LLHDTLDDAFLTYDYIFGMFGAGVADL---VGGVSKLSHLSKLARDNNTASKSVE----- 325
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
ADRLH M L A ARAV + + L + + L A
Sbjct: 326 --------------------ADRLHTM----FLAMADARAV---LIKLADRLHNMMTLDA 358
Query: 276 LK-AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFD 334
L A+ + L++ A LA NR+G
Sbjct: 359 LPVAKQQRFAKETLEIFAPLA------NRLG----------------------------- 383
Query: 335 EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEE 394
+ + K+ LE + K L+ + + K + DA IA +++ E+
Sbjct: 384 --IANWKEQLENLC-----------FKHLNPVQHMELSSKLVESYDDAMIA-SAINRLEQ 429
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
AL+ E SY +S R KSLYSI+ KM +K + I ++D LR++V +
Sbjct: 430 ALKDE---GISY-----HVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVEKEED- 480
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
CY L +VH+LW+ + G+ DYI PK +GYQSLHT V G LEVQ+RT
Sbjct: 481 --------CYKALKVVHQLWLEVPGKLKDYIRGPKFNGYQSLHTVVMGEGKIPLEVQVRT 532
Query: 515 QKMHEYAEHGLAAHWLYKETGNKLQS 540
+ MH AE G AAHW YKE +L S
Sbjct: 533 KDMHSQAEFGFAAHWRYKEDHCQLSS 558
>gi|319943391|ref|ZP_08017673.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
gi|319743206|gb|EFV95611.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
Length = 791
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 206/445 (46%), Gaps = 81/445 (18%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQ--FRKTGDPYLTHC-IHTGRILAMLIPSSGKRAVDTVV 153
PI Q A AF A HG+ +R +G L + GR LA ++ G + T V
Sbjct: 28 PILGTSQEMLAWAFDWLAAHGEGPWRVSGHGALGEARLKHGRGLAAVLELQGADPI-TRV 86
Query: 154 AGIL--HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
G+L D D E + EE G + L+A RL ++ + +QG G
Sbjct: 87 LGLLVCSDPWPDQAELDVQLGEELGAYLGTLLANCQRLMSLS-----FSALIGSQGAPGQ 141
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ LR M L M D RVV+++LA L ++R + A A Q + L + +
Sbjct: 142 SQPEVLRRMTLAMARDVRVVMVRLASALQSLRHVAAHRGTGDDAEGQGSSLAKGLVEPGV 201
Query: 272 GLWAL-KAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 330
+ + +A+++ L +Q+ A LA NR+G R
Sbjct: 202 SVAPVSEADVQGLAQEAMQVLAPLA------NRLGLYR---------------------- 233
Query: 331 TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAK--VVQDAGIALTS 388
M+DL F L R R +LA++ ++++ + V +A L++
Sbjct: 234 -----IKWEMEDL-----AFRCLEPARYR-----ELARALDSKRPERDAFVANATAELSA 278
Query: 389 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 448
L+A G++ + R K LYSI +K+R K + + K++D RALRV+V
Sbjct: 279 LLAEH---------------GIQAQVKGRSKHLYSIHNKLRAKHLSLEKLHDLRALRVMV 323
Query: 449 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 508
+ CY+ LD+VH+ W+P E DDYI +PKP+GYQSLHT V DG +
Sbjct: 324 ---------ETLADCYATLDLVHQRWVPEMDELDDYIADPKPNGYQSLHTVVMADDGRPM 374
Query: 509 EVQIRTQKMHEYAEHGLAAHWLYKE 533
EVQIRT+ MHE AE+GLAAHW YKE
Sbjct: 375 EVQIRTRAMHEAAEYGLAAHWRYKE 399
>gi|312621838|ref|YP_004023451.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202305|gb|ADQ45632.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kronotskyensis 2002]
Length = 726
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 125/220 (56%), Gaps = 27/220 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML---IPSSGKRAVDTVVAGILHDV 160
++KA FA++ H GQ R +G+PY+ H + ILA L IPS +VAG+LHDV
Sbjct: 28 IKKAFEFAQKHHDGQSRNSGEPYILHPLEVALILADLELDIPS--------IVAGLLHDV 79
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
V+D SL +E EFG E+A+LV GV++L + + R++ + R M
Sbjct: 80 VEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLERQVE------------NYRKM 127
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K EL
Sbjct: 128 LIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWEL 187
Query: 281 EDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
EDL L DL + + R Y +RI +++S
Sbjct: 188 EDLSLRYLDPEGYYDLVEKIAKKRVEREEYIKRIISLISE 227
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|302872388|ref|YP_003841024.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
gi|302575247|gb|ADL43038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
Length = 722
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 124/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAFEFAQKYHEGQARSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL IE EFG E+A+LV GV++L + + R +A + R ML+
Sbjct: 79 TSASLEDIEREFGKEIAELVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ L RLG+ +K ELEDL
Sbjct: 127 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLVHRLGISKIKWELEDL 186
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y +RI +++S
Sbjct: 187 SLRYLDPEGYYDLVEKIAKKRVEREEYIKRIISLISE 223
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVINLPQG 404
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|344996822|ref|YP_004799165.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor lactoaceticus
6A]
gi|343965041|gb|AEM74188.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
lactoaceticus 6A]
Length = 726
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKYHDGQVRSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL +E EFG E+A+LV GV++L + + R +A + R ML+
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWELEDL 190
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y ++I +++S
Sbjct: 191 SLRYLDPEGYYDLVEKIAKKRVEREEYIKKIISLISE 227
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|312792967|ref|YP_004025890.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180107|gb|ADQ40277.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 726
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKYHDGQVRSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL +E EFG E+A+LV GV++L + + R +A + R ML+
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWELEDL 190
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y ++I +++S
Sbjct: 191 SLRYLDPEGYYDLVEKIAKKRVEREEYIKKIISLISE 227
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|54025654|ref|YP_119896.1| ppGpp synthetase [Nocardia farcinica IFM 10152]
gi|54017162|dbj|BAD58532.1| putative ppGpp synthetase [Nocardia farcinica IFM 10152]
Length = 798
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N Q+QKA A H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 87 YPKANLAQLQKAFDVADERHAHQFRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 141
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EFGDEVA LV GV++L +N LG EA
Sbjct: 142 LLHDTVEDTGYTLDQLRAEFGDEVAHLVDGVTKLDKVN---------------LGAAAEA 186
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 187 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQAKKAKETLEVIAPLAHRLGMA 246
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 247 TVKWELEDLAFAILH 261
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T + + R K +SI+ KM K ++D +R++ + +
Sbjct: 290 IVNTLAASRINAVVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGIRILCDE---------V 340
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT MH
Sbjct: 341 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPDGKPLEVQIRTHDMHRT 400
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 401 AEFGIAAHWRYKETKGK 417
>gi|320449341|ref|YP_004201437.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
gi|320149510|gb|ADW20888.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
Length = 667
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 28/220 (12%)
Query: 75 LWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTG 134
LW KLE ++D + P + E+V++A FA+ AH GQ RK+G+PY+TH +
Sbjct: 7 LWDKLES-----LLDYL-----PPQDREKVREAYRFAEEAHRGQLRKSGEPYITHPVAVA 56
Query: 135 RILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ 194
ILA L + DTV+AG+LHD ++D + +E FG V +LV G +++S + +
Sbjct: 57 EILASL-----RMDADTVMAGLLHDTLEDCGVAPEELERRFGPAVRRLVEGETKVSKLYK 111
Query: 195 LLRRHRRINVNQGTLGHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK 252
L L EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K
Sbjct: 112 L-----------ANLEGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEK 160
Query: 253 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRA 292
R +AQETL I+ LA RLG+ LK ELEDL F L A
Sbjct: 161 QRRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEA 200
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 384 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 443
I ++VA EEAL ++ L+ + G+EVT R K LYSI+ KM R+ + ++YD A
Sbjct: 218 IIRKAMVALEEALRRDELLQAQ-LQGLEVT--GRPKHLYSIWKKMEREGKALEQIYDLLA 274
Query: 444 LRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 499
+RV++ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT
Sbjct: 275 VRVILDPKPAPTEEGRALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTT 334
Query: 500 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEAS 552
V +G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E S
Sbjct: 335 VIALEGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEELKRRVSWLKSIQEWQQEFS 394
Query: 553 SS 554
SS
Sbjct: 395 SS 396
>gi|222529929|ref|YP_002573811.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
gi|222456776|gb|ACM61038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
Length = 726
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 28 IKKAFEFAQKHHDGQSRNSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL +E EFG E+A+LV GV++L + + R +A + R ML+
Sbjct: 83 TSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWELEDL 190
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y ++I +++S
Sbjct: 191 SLRYLDPEGYYDLVEKIAKKRVEREEYIKKIISLISE 227
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|291460900|ref|ZP_06600232.1| GTP diphosphokinase [Fusobacterium periodonticum ATCC 33693]
gi|291380153|gb|EFE87671.1| GTP diphosphokinase [Fusobacterium periodonticum ATCC 33693]
Length = 515
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 121/191 (63%), Gaps = 19/191 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMEM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D + I+ FGD VA LV GV++L + GT +A ++R
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GT--KNQAENIR 119
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M+L M ++ RV+LIKLADRLHNMRT+ + P K +A+++ETL I+ LA RLG+ +K+
Sbjct: 120 KMILAMAENIRVILIKLADRLHNMRTLKFMKPEKQQAISKETLDIYAPLAHRLGMAKIKS 179
Query: 279 ELEDLCFAVLQ 289
ELEDL F+ L
Sbjct: 180 ELEDLSFSYLH 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GLKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|187924733|ref|YP_001896375.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phytofirmans PsJN]
gi|187715927|gb|ACD17151.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phytofirmans PsJN]
Length = 747
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAN-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
>gi|340753531|ref|ZP_08690310.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 2_1_31]
gi|422316887|ref|ZP_16398262.1| RelA/SpoT family protein [Fusobacterium periodonticum D10]
gi|229423101|gb|EEO38148.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 2_1_31]
gi|404590479|gb|EKA92877.1| RelA/SpoT family protein [Fusobacterium periodonticum D10]
Length = 725
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 121/191 (63%), Gaps = 19/191 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D + I+ FGD VA LV GV++L + GT +A ++R
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GT--KNQAENIR 119
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M+L M ++ RV+LIKLADRLHNMRT+ + P K +A+++ETL I+ LA RLG+ +K+
Sbjct: 120 KMILAMAENIRVILIKLADRLHNMRTLKFMKPEKQQAISKETLDIYAPLAHRLGMAKIKS 179
Query: 279 ELEDLCFAVLQ 289
ELEDL F+ L
Sbjct: 180 ELEDLSFSYLH 190
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GLKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|294783445|ref|ZP_06748769.1| GTP diphosphokinase [Fusobacterium sp. 1_1_41FAA]
gi|294480323|gb|EFG28100.1| GTP diphosphokinase [Fusobacterium sp. 1_1_41FAA]
Length = 725
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 121/191 (63%), Gaps = 19/191 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ ++++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFDKLKLALAFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D + I+ FGD VA LV GV++L + GT +A ++R
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAVLVDGVTKLKALPN------------GT--KNQAENIR 119
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M+L M ++ RV+LIKLADRLHNMRT+ + P K +A+++ETL I+ LA RLG+ +K+
Sbjct: 120 KMILAMAENIRVILIKLADRLHNMRTLKFMKPEKQQAISKETLDIYAPLAHRLGMAKIKS 179
Query: 279 ELEDLCFAVLQ 289
ELEDL F+ L
Sbjct: 180 ELEDLSFSYLH 190
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GLKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHILG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|339629624|ref|YP_004721267.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|379007260|ref|YP_005256711.1| (p)ppGpp synthetase I SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
gi|339287413|gb|AEJ41524.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|361053522|gb|AEW05039.1| (p)ppGpp synthetase I, SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
Length = 719
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+Q+ +AI FA AH GQ R +G+PY+ H + ILA L K T+VA +LHDVV
Sbjct: 20 DQIIRAIEFADEAHRGQSRASGEPYIAHPLAVAGILADL-----KMDTPTIVAALLHDVV 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L IE FG EVA+LV GV++L R+ V T E+A +LR M
Sbjct: 75 EDTAYTLADIESRFGTEVAQLVDGVTKLD----------RLEVR--TQEEEQAENLRKMF 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP + +A+ET+ I+ LA RLG++ +K ELE
Sbjct: 123 LAMAKDIRVILIKLADRLHNMRTLKHLPQDRVTRIAKETMEIYAPLAHRLGIFRIKWELE 182
Query: 282 DLCFAVLQ 289
DL F LQ
Sbjct: 183 DLAFQYLQ 190
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
GM +S R K LYSI+ KM ++ ++YD A+RV+V +++ CY++L
Sbjct: 227 GMVSEVSGRAKHLYSIYQKMHKQGKDFGQIYDLVAVRVLV---------ESVKDCYAVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 LVHSLWKPVPGRFKDYIAMPKSNLYQSLHTTVIGPHGEPLEVQIRTFEMHHTAEYGIAAH 337
Query: 529 WLYKETGNK 537
W YKE +K
Sbjct: 338 WRYKEGSSK 346
>gi|312127055|ref|YP_003991929.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
hydrothermalis 108]
gi|311777074|gb|ADQ06560.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
hydrothermalis 108]
Length = 722
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 124/217 (57%), Gaps = 21/217 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA++ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAFDFAQKYHDGQARNSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL +E EFG E+A LV GV++L + + R +A + R ML+
Sbjct: 79 TSASLEDVEREFGKEIADLVDGVTKLGKLEFTSKLER------------QAENYRKMLIA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K ELEDL
Sbjct: 127 MAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWELEDL 186
Query: 284 CFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
L DL + + R Y ++I +++S
Sbjct: 187 SLRYLDPEGYYDLVEKIAKKRVEREEYIKKIISLISE 223
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|347753065|ref|YP_004860630.1| (p)ppGpp synthetase I SpoT/RelA [Bacillus coagulans 36D1]
gi|347585583|gb|AEP01850.1| (p)ppGpp synthetase I, SpoT/RelA [Bacillus coagulans 36D1]
Length = 729
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 112/197 (56%), Gaps = 28/197 (14%)
Query: 99 FNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVV 153
NDE V+ A AFA +AH GQ RK+G+PY+ H I ILA L PS TV
Sbjct: 20 LNDEHVEMVRHACAFASKAHEGQKRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 72
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
AG LHDVV+D +L + EEF DEVA LV GV++L I HEE
Sbjct: 73 AGFLHDVVEDTDVTLDELREEFNDEVAMLVDGVTKLGKIK--------------YKSHEE 118
Query: 214 --ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
A + R M + M D RV+LIKLADRLHNMRT+ LPP K R +A ETL I+ LA RL
Sbjct: 119 QQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPPEKQRRIANETLEIFAPLAHRL 178
Query: 272 GLWALKAELEDLCFAVL 288
G+ A+K ELED L
Sbjct: 179 GISAIKWELEDTSLRYL 195
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L ++H
Sbjct: 238 ISGRPKHIYSIYRKMVQQHKQFNEIYDLLAVRIIV---------KSIKDCYAVLGVIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRIAEYGVAAHWAYKE 348
>gi|406967755|gb|EKD92755.1| hypothetical protein ACD_28C00337G0002 [uncultured bacterium]
Length = 798
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 114/193 (59%), Gaps = 18/193 (9%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + +V++A A++AH GQ R++G PY+TH + T IL L P DT++A +
Sbjct: 17 PSLDQSRVEEAYFLAQKAHEGQTRRSGQPYITHPLETAHILLSLKPDE-----DTILAAL 71
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDV D SL +IE++FG VA LV +LS + + GH +
Sbjct: 72 LHDVPADTEVSLKTIEKKFGHAVATLVQSNEKLSLV-------------KLKDGHADVET 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M L M D RV+ I+L++RLHNMRT++ALP K +AQETL ++ +ASRLGL++
Sbjct: 119 WRRMFLAMAKDLRVIFIRLSERLHNMRTLWALPHVKQVRIAQETLYVYAPIASRLGLYSF 178
Query: 277 KAELEDLCFAVLQ 289
K ELEDLC VL+
Sbjct: 179 KTELEDLCLQVLE 191
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDV-GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
G+ + RLK LYSI+ KM+ K+ + + D A+R+++ D+ CYS +
Sbjct: 228 GLTGEVHGRLKHLYSIYRKMQVKNAQSVDDILDFFAVRIILPDQFKQ-DREFFAHCYSFI 286
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP----DGSALEVQIRTQKMHEYAEH 523
+H+ +P+ G F DYI PK +GY+S+HT VQG + LE+Q+RT MH+ +E+
Sbjct: 287 GELHQKCMPLPGRFKDYIAVPKLNGYRSIHTTVQGLVKGFEQYPLEIQVRTASMHQESEY 346
Query: 524 GLAAHWLYKET 534
GLAAHW YK++
Sbjct: 347 GLAAHWFYKDS 357
>gi|336114504|ref|YP_004569271.1| (p)ppGpp synthetase I SpoT/RelA [Bacillus coagulans 2-6]
gi|335367934|gb|AEH53885.1| (p)ppGpp synthetase I, SpoT/RelA [Bacillus coagulans 2-6]
Length = 723
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 112/197 (56%), Gaps = 28/197 (14%)
Query: 99 FNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVV 153
NDE V+ A AFA +AH GQ RK+G+PY+ H I ILA L PS TV
Sbjct: 14 LNDEHVEMVRHACAFASKAHEGQKRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 66
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
AG LHDVV+D +L + EEF DEVA LV GV++L I HEE
Sbjct: 67 AGFLHDVVEDTDVTLDELREEFNDEVAMLVDGVTKLGKIK--------------YKSHEE 112
Query: 214 --ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
A + R M + M D RV+LIKLADRLHNMRT+ LPP K R +A ETL I+ LA RL
Sbjct: 113 QQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPPEKQRRIANETLEIFAPLAHRL 172
Query: 272 GLWALKAELEDLCFAVL 288
G+ A+K ELED L
Sbjct: 173 GISAIKWELEDTSLRYL 189
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L ++H
Sbjct: 232 ISGRPKHIYSIYRKMVQQHKQFNEIYDLLAVRIIV---------KSIKDCYAVLGVIHTC 282
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 283 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRIAEYGVAAHWAYKE 342
>gi|209516676|ref|ZP_03265529.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
gi|209502951|gb|EEA02954.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
Length = 747
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA + + ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPNTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAQ-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR KD+ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKDLNFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EV +LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVGQLVCDVRKLLRLGTVSLRAAQNALPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL +R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQTLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
>gi|410667595|ref|YP_006919966.1| GTP pyrophosphokinase RelA [Thermacetogenium phaeum DSM 12270]
gi|409105342|gb|AFV11467.1| GTP pyrophosphokinase RelA [Thermacetogenium phaeum DSM 12270]
Length = 726
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 117/194 (60%), Gaps = 17/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP F+ E V++A FAK AH GQFR +G+ ++ H + ILA L + + ++VAG
Sbjct: 14 YPNFDRELVERAYLFAKEAHRGQFRNSGEAFIEHPLQVACILADL-----QLDITSIVAG 68
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D SL IE +FG EV LVAGV++L I + R A
Sbjct: 69 LLHDVVEDTNTSLQDIETDFGPEVRFLVAGVTKLGKIEYKSKEDR------------HAE 116
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHN+RT+ A K R +A+ETL I+ +A RLG++
Sbjct: 117 NLRKMFLAMARDIRVILIKLADRLHNLRTLGAHEVPKQREIARETLEIFAPVAHRLGIYK 176
Query: 276 LKAELEDLCFAVLQ 289
+K E+EDL F L+
Sbjct: 177 IKWEMEDLAFRYLE 190
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K+ YSI+ KM + + ++YD A+RV+V ++ CY+ L
Sbjct: 227 GIKAEISGRPKNFYSIYRKMVDQGKDLSEIYDLVAVRVIV---------ETVKECYATLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI G F DYI PK + YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 278 IVHTMWKPIPGRFKDYIAMPKQNMYQSLHTTLVGPLGEPFELQIRTFEMHRTAEYGIAAH 337
Query: 529 WLYKETG 535
W YKE G
Sbjct: 338 WRYKEGG 344
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 785
+ K+ LR +L W+ +LR +S K+ + +VV V P G+++
Sbjct: 348 DPEFEKKLSWLRQILEWQHELRDAREFMESLKID----------LFSDVVFVFTPKGDVV 397
Query: 786 RLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 828
L SGS D A ++ E G + VNG++V + LK+GDIVE+
Sbjct: 398 ELPSGSVPIDFAYRIHTEVGHRCIGAKVNGRIVPLDYRLKNGDIVEI 444
>gi|91784429|ref|YP_559635.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
gi|91688383|gb|ABE31583.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
Length = 747
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
>gi|237742590|ref|ZP_04573071.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 4_1_13]
gi|294784891|ref|ZP_06750179.1| GTP diphosphokinase [Fusobacterium sp. 3_1_27]
gi|229430238|gb|EEO40450.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 4_1_13]
gi|294486605|gb|EFG33967.1| GTP diphosphokinase [Fusobacterium sp. 3_1_27]
Length = 724
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
DL F+ L
Sbjct: 182 DLAFSYLH 189
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M E AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDEIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|427402162|ref|ZP_18893234.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
gi|425718935|gb|EKU81876.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
Length = 746
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 15/175 (8%)
Query: 373 QKKAKVVQDAGIALTSLVACEEA-LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 431
++ A+++++ ++ S VA A L+ EL + G++ +S R K +YSI+SKMR K
Sbjct: 215 KRIARMLEEKRMSRESFVASSIARLQSELAAA-----GIKADVSGRPKHIYSIWSKMRGK 269
Query: 432 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 491
++ ++YD RA RV+V D I+ CY++L ++H +W P+ EFDDYI PKP+
Sbjct: 270 ELDFSELYDVRAFRVIVAD---------IKTCYTVLGVIHNIWTPVPKEFDDYISRPKPN 320
Query: 492 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 546
GY+SLHT V DG LEVQIRTQ+MH +AE+G+AAHW YKE G DE
Sbjct: 321 GYRSLHTVVTADDGRPLEVQIRTQEMHNFAEYGIAAHWRYKEEGGSNFKSQQYDE 375
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 22/153 (14%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T +AG+L ++ + G IEE FG EVA LV GV +QL+R R + V Q +
Sbjct: 67 ETRIAGLLFELALMDPSTFGRIEERFGPEVAALVQGV------HQLIRL-RDLTVGQAPV 119
Query: 210 G-----------HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAV 256
G H E LR MLL M D RVVL++LA +R + RA
Sbjct: 120 GSGKNAAQQAAAHNET--LRKMLLAMATDMRVVLMRLASCAATLRHFAEHKRFDEVTRAY 177
Query: 257 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
+E L + LA+RLG+W LK ELEDL F ++
Sbjct: 178 GREVLDFYAPLANRLGIWQLKWELEDLAFRFIE 210
>gi|256845985|ref|ZP_05551443.1| GTP pyrophosphokinase [Fusobacterium sp. 3_1_36A2]
gi|256719544|gb|EEU33099.1| GTP pyrophosphokinase [Fusobacterium sp. 3_1_36A2]
Length = 724
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
DL F+ L
Sbjct: 182 DLAFSYLH 189
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDKIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|421144446|ref|ZP_15604359.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|395489103|gb|EJG09945.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 724
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
DL F+ L
Sbjct: 182 DLAFSYLH 189
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M E AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDEIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|19704814|ref|NP_604376.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296327789|ref|ZP_06870328.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19715157|gb|AAL95675.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296155136|gb|EFG95914.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 725
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLK------------TLPNGT--KNQAENIRKMI 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 123 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELE 182
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 183 DIAFSYLH 190
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K YSI+ KM +K +YD +RV+V DK CY +L I
Sbjct: 228 IKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLGI 278
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAHW
Sbjct: 279 VHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAHW 338
Query: 530 LYKET 534
YKE
Sbjct: 339 NYKEN 343
>gi|146296035|ref|YP_001179806.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409611|gb|ABP66615.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 722
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 125/220 (56%), Gaps = 27/220 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK+ H GQ R +G+PY+ H + ILA L + + ++VAG+LHDVV+D
Sbjct: 24 IKKAYEFAKKYHDGQERSSGEPYIVHPLEVALILADL-----ELDIASIVAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRL---SYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
S IE+EFG E+A LV GV++L + ++L ++A + R M
Sbjct: 79 TSASPQEIEQEFGGEIASLVDGVTKLGKLEFTSKL---------------EQQAENYRKM 123
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA RLG+ +K EL
Sbjct: 124 LIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLAHRLGISKIKWEL 183
Query: 281 EDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
EDL L DL + + R Y +RI ++S
Sbjct: 184 EDLALRYLDPEGYYDLVEKIAKKRVEREEYIQRIINLISE 223
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 534 TGNKLQSISSMDESD 548
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 791 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|323526737|ref|YP_004228890.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1001]
gi|323383739|gb|ADX55830.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1001]
Length = 747
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 357
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
P F+D A+AF R H G+ R +G+ H T I+ L + A
Sbjct: 14 PSFDD-----AMAFV-RQHAGEVRLSSGELLADHAAGTASIMRTLNVDPPAVLAAALFAL 67
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
H E I + FG+EVA+LV V +L + + R + + + + A
Sbjct: 68 TPH-----LQEPERVIADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAAR 122
Query: 216 D-----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 270
LR MLL D RVVLI+LA RL ++R A + VA+ETL I+ LA+R
Sbjct: 123 RAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANR 182
Query: 271 LGLWALKAELEDLCF 285
LG+W LK ELEDL F
Sbjct: 183 LGIWQLKWELEDLAF 197
>gi|407714183|ref|YP_006834748.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
gi|407236367|gb|AFT86566.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
Length = 728
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 173 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 227
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 228 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 278
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 279 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 338
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 59 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 118
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 119 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 178
>gi|237746845|ref|ZP_04577325.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
gi|229378196|gb|EEO28287.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
Length = 754
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 96/155 (61%), Gaps = 11/155 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI++KMR K + ++YD RA RV+V D I+ C+++LD
Sbjct: 255 GIKADVTGRPKHIYSIYNKMRGKSLDFSRMYDLRAFRVIVSD---------IKTCFTVLD 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+HRLW PI EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE G+AAH
Sbjct: 306 IIHRLWTPILKEFDDYISRPKPNGYQSLHTVVVSENGQPFEVQIRTQEMHRLAEFGVAAH 365
Query: 529 WLYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 561
W YKETG DE S + S D DD
Sbjct: 366 WRYKETGGSSFVAQQYDEKISFLRQLLSWKTDVDD 400
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 88/186 (47%), Gaps = 9/186 (4%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V A AFA+ ++ +G G ILA L + R +AG+L +
Sbjct: 34 VMDAYAFARESYADISLDSGQSAAEFSKSIGLILAELNSDAQTR-----IAGLLAVLPKY 88
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VNQGTLGHEEANDLRVML 221
E IE FG EV+ LV V +L + L I N + +A LR ML
Sbjct: 89 HPEVADQIESRFGTEVSNLVDSVRKLFKLRDLTGGLEEIGHGKNAAQIRKAQAETLRKML 148
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAK--ARAVAQETLLIWCSLASRLGLWALKAE 279
L M D RVV+I+LA R+ +R + +R A+ETL I+ LA+RLG+W +K E
Sbjct: 149 LAMAADMRVVMIRLAARMAALRYLARKKEDNDASRHYAKETLEIYAPLANRLGIWQVKWE 208
Query: 280 LEDLCF 285
LEDL F
Sbjct: 209 LEDLAF 214
>gi|358466796|ref|ZP_09176585.1| hypothetical protein HMPREF9093_01060 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068679|gb|EHI78668.1| hypothetical protein HMPREF9093_01060 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 725
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 119/191 (62%), Gaps = 19/191 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ +++ A+AFA+ +H GQ+RK+GD Y+ H + +IL + K DTVVAG+LH
Sbjct: 19 YDFNKLKLALAFAEESHKGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTVVAGLLH 73
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D + I+ FGD VA LV GV++L + GT +A ++R
Sbjct: 74 DVVEDTLIPIADIKYNFGDTVAILVDGVTKLKALPN------------GT--KNQAENIR 119
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M+L M ++ RV+LIKLADRLHNMRT+ + P K + +++ETL I+ LA RLG+ +K+
Sbjct: 120 KMILAMAENIRVILIKLADRLHNMRTLKFMKPEKQQTISKETLDIYAPLAHRLGMAKIKS 179
Query: 279 ELEDLCFAVLQ 289
ELEDL F+ L
Sbjct: 180 ELEDLAFSYLH 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GLKAEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------AACYHVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|304309936|ref|YP_003809534.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [gamma
proteobacterium HdN1]
gi|301795669|emb|CBL43868.1| Guanosine-3\',5\'-bis(Diphosphate) 3\'-pyrophosphohydrolase [gamma
proteobacterium HdN1]
Length = 703
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 116/194 (59%), Gaps = 24/194 (12%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA---MLIPSSGKRAVDTVVAGILHD 159
Q+QKA FA AH GQFR+TGDPY+ H + ILA M PS ++AG+LHD
Sbjct: 21 QIQKAYTFAASAHEGQFRRTGDPYIAHPLAVSMILADMHMDAPS--------IMAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S ++++EFG+ VA LV GVS++ I + +A + R
Sbjct: 73 VIEDTHVSKEAVKQEFGETVANLVDGVSKIGAIKF------------ESKAEAQAQNFRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M+L M D RV+L+KLADRLHNMRT+ L P K R +A ETL I+ +A RLG+ ++ E
Sbjct: 121 MMLAMTKDIRVILVKLADRLHNMRTLAVLHPQKRRRIATETLEIYAPIAYRLGMNEVRIE 180
Query: 280 LEDLCF-AVLQMRA 292
LEDL F A+ MRA
Sbjct: 181 LEDLGFQAIYPMRA 194
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 14/158 (8%)
Query: 375 KAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG 434
K +++ G +V+ +E L L +++P + R K LYSI+ KM+ +
Sbjct: 198 KKAIIKARGTRKDMIVSIQEMLVHAL--EHNHLPARVI---GREKHLYSIYQKMKTQRKP 252
Query: 435 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQ 494
++ D R++V + + CY L VH L+ PI G F DYI PK +GYQ
Sbjct: 253 FSEIMDVYGFRIIVDN---------VDACYRALGTVHNLYTPIPGRFKDYIAIPKSNGYQ 303
Query: 495 SLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
SLHT ++G +G +E+QIRT+ M + A G+A+HWLYK
Sbjct: 304 SLHTTLKGKNGVPIEIQIRTEDMEDMANSGIASHWLYK 341
>gi|385208783|ref|ZP_10035651.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
gi|385181121|gb|EIF30397.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
Length = 747
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 19/178 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAG 355
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
>gi|357514021|ref|XP_003627299.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355521321|gb|AET01775.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 467
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 117/194 (60%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF +E V KA A++AH GQ R +GDPYL HC+ T +LA++ +S V AG
Sbjct: 215 HKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANS-----TVVAAG 269
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD VDDA + I FG VA LV GVS+LS++++L R N EA+
Sbjct: 270 LLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARD------NNTASKSVEAD 323
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM T+ ALP AK + A+ETL I+ LA+RLG+
Sbjct: 324 RLHTMFLAMAD-ARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIAN 382
Query: 276 LKAELEDLCFAVLQ 289
K +LE+LCF L
Sbjct: 383 WKDQLENLCFKHLN 396
>gi|219849404|ref|YP_002463837.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus aggregans DSM 9485]
gi|219543663|gb|ACL25401.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus aggregans DSM 9485]
Length = 789
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 114/187 (60%), Gaps = 19/187 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A A AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRAYALAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLS-YINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
+ IE FG +VA LV GV++LS Y N+ R + GT R +++
Sbjct: 146 TGVPIEVIERFFGKQVANLVDGVTKLSGYENKT-----REEIQAGTY--------RKLII 192
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELED
Sbjct: 193 ASADDPRVVLIKLADRLHNMRTIHATPPNKQQRVARETLDIYAPLAHRLGMWQMKSELED 252
Query: 283 LCFAVLQ 289
L F VL
Sbjct: 253 LAFKVLH 259
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNN-----EVGACYQALG 350
Query: 469 IVHRL--WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR++KMHE AEHG+A
Sbjct: 351 VVHSKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSRKMHEEAEHGIA 410
Query: 527 AHWLYKETGN 536
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|126700359|ref|YP_001089256.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|254976339|ref|ZP_05272811.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-66c26]
gi|255093724|ref|ZP_05323202.1| putative GTP pyrophosphokinase [Clostridium difficile CIP 107932]
gi|255101915|ref|ZP_05330892.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-63q42]
gi|255307784|ref|ZP_05351955.1| putative GTP pyrophosphokinase [Clostridium difficile ATCC 43255]
gi|255315476|ref|ZP_05357059.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-76w55]
gi|255518139|ref|ZP_05385815.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-97b34]
gi|255651255|ref|ZP_05398157.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-37x79]
gi|260684319|ref|YP_003215604.1| GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260687978|ref|YP_003219112.1| GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296452442|ref|ZP_06894143.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296877791|ref|ZP_06901817.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|306521098|ref|ZP_07407445.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-32g58]
gi|384361963|ref|YP_006199815.1| GTP pyrophosphokinase [Clostridium difficile BI1]
gi|423081063|ref|ZP_17069675.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|423085064|ref|ZP_17073522.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|423089842|ref|ZP_17078191.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
gi|115251796|emb|CAJ69631.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|260210482|emb|CBA64959.1| putative GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260213995|emb|CBE06110.1| putative GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296258772|gb|EFH05666.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296431242|gb|EFH17063.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|357550919|gb|EHJ32724.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|357551372|gb|EHJ33162.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|357557606|gb|EHJ39140.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
Length = 735
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 18/196 (9%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
I++ + V P N E V+KA AK+AH GQ+RK+G+PY H + IL + +
Sbjct: 9 IIEKIKVYA-PNANFEMVEKAYNLAKKAHEGQYRKSGEPYFIHPLAVANILIEM-----E 62
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
++T+ AG+LHDVV+D + I++EFG EVA LV GV++L I ++R Q
Sbjct: 63 LDIETITAGLLHDVVEDTEYTYEDIKKEFGKEVADLVDGVTKLGQI-----KYRSKEETQ 117
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
+ +LR M L M D RV+LIKLADRLHNMRT+ +PP KA+ A+ETL I+
Sbjct: 118 -------SENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMPPEKAKYKAKETLEIYGG 170
Query: 267 LASRLGLWALKAELED 282
+A RLG+ +K ELED
Sbjct: 171 IAHRLGISKIKWELED 186
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K YSI+ KM++K +++D A+R++V + ++ CY++L IVH LW P
Sbjct: 238 RPKHFYSIYRKMQKKHKTFEEIFDLTAVRILVDN---------VKDCYAVLGIVHTLWRP 288
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 289 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAENGIAAHWKYKE 345
Score = 39.3 bits (90), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 724 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 783
+S E+ + K++ LR M+ WE+ L+ + N V V P G+
Sbjct: 348 SSKESKVEEKLQWLRQMMEWEKDLKDPQEFMDALKEDVFNSQ---------VYVFTPKGD 398
Query: 784 IMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 828
++ L + ST D A +V + K V ++G++V + +L++G+IVEV
Sbjct: 399 VIELPAESTPIDFAYRVHTNVGNKCVGAKIDGRIVPIDYKLQNGNIVEV 447
>gi|422339976|ref|ZP_16420932.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. polymorphum
F0401]
gi|355370415|gb|EHG17798.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. polymorphum
F0401]
Length = 725
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 123 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELE 182
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 183 DMAFSYLH 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|115476746|ref|NP_001061969.1| Os08g0457600 [Oryza sativa Japonica Group]
gi|33354141|dbj|BAC81140.1| plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
gi|42408400|dbj|BAD09583.1| plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
gi|113623938|dbj|BAF23883.1| Os08g0457600 [Oryza sativa Japonica Group]
gi|215694336|dbj|BAG89329.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704598|dbj|BAG94226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201251|gb|EEC83678.1| hypothetical protein OsI_29472 [Oryza sativa Indica Group]
gi|222640676|gb|EEE68808.1| hypothetical protein OsJ_27564 [Oryza sativa Japonica Group]
Length = 718
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 119/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF+DE V KA A+RAH GQ R +GDPYL HC+ T +LA + G A V AG+L
Sbjct: 215 IFHDELVVKAFFEAERAHRGQTRASGDPYLQHCVETAVLLAKI----GANAT-VVSAGLL 269
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R + N T+ EA+ L
Sbjct: 270 HDTIDDSFMDYDQIFRMFGAGVADLVEGVSKLSHLSKLARDN---NTASRTV---EADRL 323
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
M L M D R VLIKLADRLHNM+TI ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 324 HTMFLAMAD-ARAVLIKLADRLHNMKTIEALPLVKQQRFAKETMEIFVPLANRLGIASWK 382
Query: 278 AELEDLCFAVLQ 289
+LE++CF L
Sbjct: 383 DQLENICFKHLN 394
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 84/134 (62%), Gaps = 9/134 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
+LS R KSLYSI+SKM +K++ + V+D LR+VV + Q CY LDIVH+
Sbjct: 434 SLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTE---------QDCYQALDIVHK 484
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI++PK +GY+SLHT + EVQIRT++MH AE+G AAHW YK
Sbjct: 485 LWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAHWRYK 544
Query: 533 ETGNKLQSISSMDE 546
E G K + M E
Sbjct: 545 EGGCKHSFVLQMVE 558
>gi|326506174|dbj|BAJ86405.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRTAEADRL 321
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 322 HTMLLAMAD-ARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWK 380
Query: 278 AELEDLCFAVLQ 289
+LE+LCF L
Sbjct: 381 DQLENLCFKHLN 392
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 9/81 (11%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 473 LWIPIDGEFDDYIVNPKPSGY 493
LW +DG F DYI PK +GY
Sbjct: 483 LWPQVDGRFKDYISLPKLNGY 503
>gi|238027732|ref|YP_002911963.1| GTP diphosphokinase [Burkholderia glumae BGR1]
gi|237876926|gb|ACR29259.1| GTP diphosphokinase [Burkholderia glumae BGR1]
Length = 742
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 224 ERLEREL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 273
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 274 ----PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 329
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 330 TQEMHRFAEYGVAAHWRYKEAGAR 353
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND--------LRVMLL 222
I + FG EVA+LVA +L + + I Q + G +A LR MLL
Sbjct: 75 ITQRFGAEVARLVADTRKLLKLGTV----SLIAARQASDGSRDAQAERRAQIEALRKMLL 130
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
D RVV+I+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 131 AFAQDIRVVMIRLASRLQSLRYYAAAKLQPPPDVARETLDIYAPLANRLGIWQLKWELED 190
Query: 283 LCF 285
L F
Sbjct: 191 LAF 193
>gi|416908762|ref|ZP_11931227.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
gi|325528728|gb|EGD05798.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
Length = 744
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQEL--AQAHIPA---DVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FGDEVA+LV+ V +L + + LR + + G E LR MLL
Sbjct: 77 LAERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAPDAGRDAAAERRTQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|421527317|ref|ZP_15973920.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum ChDC F128]
gi|402256525|gb|EJU07004.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium nucleatum ChDC F128]
Length = 725
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 123 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELE 182
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 183 DMAFSYLH 190
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVDDK---------ATCYHVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|406941177|gb|EKD73736.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, partial
[uncultured bacterium]
Length = 392
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA F+K+AH Q R +G+PY+TH + ILA + + V+T+ A ILHDV++D
Sbjct: 23 IEKAYEFSKKAHGDQIRYSGEPYITHPVAVALILAEM-----RMDVETITAAILHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +I +FG EV+ LV GV++L+ IN H +A + R M++
Sbjct: 78 TSVNTTNIINQFGQEVSNLVDGVTKLTQIN--FENH----------AQAQAENFRKMIMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D R++L+KLADRLHNMRTI+ LP K R +A ETL I+ +A+RLG+ A + ELEDL
Sbjct: 126 MASDIRIILVKLADRLHNMRTIHGLPAKKRRRIALETLEIFAPIANRLGMHAFRVELEDL 185
Query: 284 CFAVL 288
F L
Sbjct: 186 GFRAL 190
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V LSSR K LYSI+ KM K + ++ D R+ VG + CY +L ++H
Sbjct: 232 VNLSSRGKHLYSIYKKMHEKHLSFSEIMDVYGFRITVGK---------VDTCYRVLGLLH 282
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
L+ PI F DYI PK +GYQSLHT + GP G +E QIRT++MH+ AE+G+AAHWLY
Sbjct: 283 GLFKPISQRFKDYIAIPKANGYQSLHTILFGPYGVPIEAQIRTEEMHKVAENGIAAHWLY 342
Query: 532 KETGNKLQSISS--------MDESDIEASSSL 555
K L + S M E D A +SL
Sbjct: 343 KTEKKALHDVQSRANAWLQGMVEMDQSARNSL 374
>gi|254303921|ref|ZP_04971279.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|22087659|gb|AAM90994.1|AF525504_1 ppGpp [Fusobacterium nucleatum]
gi|148324113|gb|EDK89363.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 725
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 22 DKIKLALGFAEESHQGQYRKSGDDYIIHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 77 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 123 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKIKSELE 182
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 183 DIAFSYLH 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 227 GIKAEVKGRFKHFYSIYKKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 278 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 337
Query: 529 WLYKET 534
W YKE
Sbjct: 338 WNYKEN 343
>gi|336400155|ref|ZP_08580943.1| hypothetical protein HMPREF0404_00234 [Fusobacterium sp. 21_1A]
gi|336163352|gb|EGN66284.1| hypothetical protein HMPREF0404_00234 [Fusobacterium sp. 21_1A]
Length = 574
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 182 DIAFSYLH 189
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|170701133|ref|ZP_02892107.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
gi|170133955|gb|EDT02309.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
Length = 740
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 245
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 92/194 (47%), Gaps = 15/194 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAN 215
L ++D L + FG+EVA+LV+ V +L + + LR + + G EE
Sbjct: 66 LTPHLNDPEREL---TDRFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDTGRDAAEERR 122
Query: 216 D----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RL
Sbjct: 123 TQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRL 182
Query: 272 GLWALKAELEDLCF 285
G+W LK ELEDL F
Sbjct: 183 GIWQLKWELEDLAF 196
>gi|115351411|ref|YP_773250.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria AMMD]
gi|115281399|gb|ABI86916.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria AMMD]
Length = 739
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 190 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 244
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 245 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 295
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 296 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
L ++D L E FG+EVA+LV+ V +L + + R + G EE
Sbjct: 66 LTPHLNDPEREL---TERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRT 122
Query: 217 ----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 272
LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG
Sbjct: 123 QIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLG 182
Query: 273 LWALKAELEDLCF 285
+W LK ELEDL F
Sbjct: 183 IWQLKWELEDLAF 195
>gi|237743935|ref|ZP_04574416.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 7_1]
gi|289765417|ref|ZP_06524795.1| hypothetical protein PSAG_01019 [Fusobacterium sp. D11]
gi|336419052|ref|ZP_08599319.1| GTP diphosphokinase [Fusobacterium sp. 11_3_2]
gi|423138132|ref|ZP_17125775.1| RelA/SpoT family protein [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229432966|gb|EEO43178.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 7_1]
gi|289716972|gb|EFD80984.1| hypothetical protein PSAG_01019 [Fusobacterium sp. D11]
gi|336164057|gb|EGN66969.1| GTP diphosphokinase [Fusobacterium sp. 11_3_2]
gi|371958694|gb|EHO76403.1| RelA/SpoT family protein [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 724
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 182 DIAFSYLH 189
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKDFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|222524836|ref|YP_002569307.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus sp. Y-400-fl]
gi|222448715|gb|ACM52981.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus sp. Y-400-fl]
Length = 788
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++++ AFA AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRSYAFAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ + IE+ FG +VA LV GV++LS + +A R +++
Sbjct: 146 SGVPISVIEQFFGQQVASLVDGVTKLS------------GYESKSKEEAQAGTYRKLIIA 193
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL
Sbjct: 194 SADDPRVVLIKLADRLHNMRTIHATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDL 253
Query: 284 CFAVLQ 289
F L
Sbjct: 254 AFKTLH 259
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALC 350
Query: 469 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 527 AHWLYKETGN 536
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|163847013|ref|YP_001635057.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
gi|163668302|gb|ABY34668.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
Length = 788
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++++ AFA AH GQ R++G PY+ H I IL L + +++ A +LHDVV+D
Sbjct: 91 IRRSYAFAAVAHEGQRRQSGQPYIDHPIEVAIILLDL-----RLDTESIAAALLHDVVED 145
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ + IE+ FG +VA LV GV++LS + +A R +++
Sbjct: 146 SGVPISVIEQFFGQQVASLVDGVTKLS------------GYESKSKEEAQAGTYRKLIIA 193
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL
Sbjct: 194 SADDPRVVLIKLADRLHNMRTIHATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDL 253
Query: 284 CFAVLQ 289
F L
Sbjct: 254 AFKTLH 259
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALG 350
Query: 469 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 527 AHWLYKETGN 536
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|167836853|ref|ZP_02463736.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|424904162|ref|ZP_18327672.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|390930140|gb|EIP87542.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
Length = 747
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + + VA E L++EL + +IP +S R
Sbjct: 192 LEDLAFRFEDPVTYKRIAKLLDEKRVEREAYVADAIERLQREL--AAVHIPA---EVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIRDCYTVLGIVHHLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLSSGELLADHATGTSAIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEA----NDLRV 219
I FGDEVA+LV V +L + + LR + + E LR
Sbjct: 74 --PEKQIAGRFGDEVARLVTDVRKLLRLGTVSLRAAQSAPADASRDAQAERRAQIEALRK 131
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 280 LEDLCF 285
LEDL F
Sbjct: 192 LEDLAF 197
>gi|330816668|ref|YP_004360373.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
gi|327369061|gb|AEA60417.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
Length = 744
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 LEQEL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV------- 275
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ
Sbjct: 276 --PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQ 333
Query: 516 KMHEYAEHGLAAHWLYKETGNK 537
+MH +AE+G+AAHW YKE G +
Sbjct: 334 EMHRFAEYGVAAHWRYKEAGTR 355
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMVD 226
I + FG+EVA+LVA V +L + L+ + N+ A LR MLL
Sbjct: 77 IAQRFGEEVARLVADVRKLLRLGTVSLMAAKQVPEGNRDAQAERRAQIEALRKMLLAFAQ 136
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVV+I+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 DIRVVVIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
>gi|422933491|ref|ZP_16966411.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339891612|gb|EGQ80570.1| GTP diphosphokinase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 552
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLKALPN------------GT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 182 DIAFSYLH 189
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKDFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|326503772|dbj|BAJ86392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 720
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRTAEADRL 321
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 322 HTMLLAMAD-ARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWK 380
Query: 278 AELEDLCFAVLQ 289
+LE+LCF L
Sbjct: 381 DQLENLCFKHLN 392
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW +DG F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 483 LWPQVDGRFKDYISLPKLNGYRSLHTVVMSDGDHTFEVQIRTKEMHLQAEYGFAAHWRYK 542
Query: 533 E 533
E
Sbjct: 543 E 543
>gi|326505464|dbj|BAJ95403.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 720
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AHHGQ R +GDP+L HC+ T +LA + S+ V AG+L
Sbjct: 213 IFHEELVVKAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGASA-----TVVSAGLL 267
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 268 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRTAEADRL 321
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNMRT+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 322 HTMLLAMAD-ARAVLIKLADRVHNMRTLEALPLVKQQRFAKETMEIFVPLANRLGIASWK 380
Query: 278 AELEDLCFAVLQ 289
+LE+LCF L
Sbjct: 381 DQLENLCFKHLN 392
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R K+LYS++SKM++K++ + +V+D LR+VV DK + CY LD+VH+
Sbjct: 432 NLSGRNKNLYSVYSKMQKKNLTMDEVHDIHGLRLVV-DKE--------EDCYRALDVVHK 482
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW +DG F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 483 LWPQVDGRFKDYISLPKLNGYRSLHTVVMSDGDHTFEVQIRTKEMHLQAEYGFAAHWRYK 542
Query: 533 E 533
E
Sbjct: 543 E 543
>gi|134295546|ref|YP_001119281.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387902065|ref|YP_006332404.1| GTP pyrophosphokinase [Burkholderia sp. KJ006]
gi|134138703|gb|ABO54446.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387576957|gb|AFJ85673.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Burkholderia sp.
KJ006]
Length = 744
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 19/178 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AQAHIPA---DVSGR 245
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 296
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAG 354
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FG+EVA+LVA V +L + + LR + + G ++ LR MLL
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAMPDAGRDAAQQRRTQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKADPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|357148012|ref|XP_003574588.1| PREDICTED: GTP pyrophosphokinase-like [Brachypodium distachyon]
Length = 711
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 119/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF+DE V KA A++AH GQ R +GDPYL HC+ T +LA + G A V AG+L
Sbjct: 208 IFHDELVVKAFFEAEKAHRGQTRASGDPYLQHCVETAVLLAKI----GANAT-VVSAGLL 262
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R + N T+ EA+ L
Sbjct: 263 HDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLSHLSKLARDN---NTASRTV---EADRL 316
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
M L M D R VLIKLADRLHNM+TI ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 317 HTMFLAMAD-ARAVLIKLADRLHNMKTIEALPFVKQQRFAKETMEIFVPLANRLGIASWK 375
Query: 278 AELEDLCFAVLQ 289
+LE++CF L
Sbjct: 376 EQLENICFKHLN 387
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
++S R KSLYSI+SKM +K++ + V+D LR+VV + CY LDIVH+
Sbjct: 427 SVSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVETEKD---------CYRALDIVHK 477
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI++PK +GY+SLHT + EVQIRT++MH AE G AAHW YK
Sbjct: 478 LWPGVSGRFKDYILHPKVNGYRSLHTVILCEGVHPFEVQIRTKEMHLQAEFGFAAHWRYK 537
Query: 533 ETGNKLQSISSMDE 546
E G + + M E
Sbjct: 538 EGGCRHAFVLQMVE 551
>gi|441523303|ref|ZP_21004929.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sihwensis NBRC 108236]
gi|441457074|dbj|GAC62890.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sihwensis NBRC 108236]
Length = 764
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 116/195 (59%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A A+ AH GQFRK+GDPY+TH + ILA L + T+VA
Sbjct: 51 YPKADVAVLQQAYAVAEEAHSGQFRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 105
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E +FG EVA LV GV++L + LG EA
Sbjct: 106 LLHDTVEDTSYSLEKLEADFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 150
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 151 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 210
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 211 TVKWELEDLAFAILH 225
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 266 TVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGMRILCDE---------VRDCYAAIGVVHS 316
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P YQSLHT V GP+G LEVQIRT +MH AE G+AAHW YK
Sbjct: 317 LWQPMAGRFKDYIAQPSFGVYQSLHTTVIGPEGKPLEVQIRTFEMHRTAEFGIAAHWRYK 376
Query: 533 E----TGNKLQSISSMDE 546
E G K I+ +D+
Sbjct: 377 EGRKGKGRKATDIAEVDD 394
>gi|402566725|ref|YP_006616070.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
gi|402247922|gb|AFQ48376.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
Length = 744
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I + VA EA+E+ + ++ ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVA--EAIERLQHELAEAHIPA---DVSGR 245
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQDMHRFAEYGVAAHWRYKEAGAR 356
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FG+EVA+LVA V +L + + LR + + G EE LR MLL
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAKPDTGRDAAEERRTQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|421475885|ref|ZP_15923817.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
gi|400229518|gb|EJO59365.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
Length = 744
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 225
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|161524953|ref|YP_001579965.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189350299|ref|YP_001945927.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
gi|160342382|gb|ABX15468.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189334321|dbj|BAG43391.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
Length = 744
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 225
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|221197732|ref|ZP_03570778.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|221204710|ref|ZP_03577727.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221214905|ref|ZP_03587873.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|421467902|ref|ZP_15916483.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
gi|221165132|gb|EED97610.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|221175567|gb|EEE07997.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221181664|gb|EEE14065.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|400232987|gb|EJO62569.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
Length = 744
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 225
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|260495168|ref|ZP_05815296.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
sp. 3_1_33]
gi|260197225|gb|EEW94744.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Fusobacterium
sp. 3_1_33]
Length = 369
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A+ FA+ +H GQ+RK+GD Y+ H + +IL + K DT+VAG+LHDVV
Sbjct: 21 DKIKLALGFAEESHQGQYRKSGDDYIVHPVEVAKILMDM-----KMDTDTIVAGLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I+ FGD VA LV GV++L + GT +A ++R M+
Sbjct: 76 EDTLIPIADIKYNFGDTVATLVDGVTKLK------------ALPNGT--KNQAENIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M ++ RV+LIKLADRLHNMRT+ + P K +++++ETL I+ LA RLG+ +K+ELE
Sbjct: 122 LAMAENIRVILIKLADRLHNMRTLKFMKPEKQQSISKETLDIYAPLAHRLGMAKVKSELE 181
Query: 282 DLCFAVLQ 289
D+ F+ L
Sbjct: 182 DIAFSYLH 189
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K +YD +RV+V DK CY +L
Sbjct: 226 GIKAEVKGRFKHFYSIYRKMYQKGKEFDDIYDLMGVRVIVEDK---------ATCYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M + AE G+AAH
Sbjct: 277 IVHSQYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTKDMDDIAEEGIAAH 336
Query: 529 WLYKET 534
W YKE
Sbjct: 337 WNYKEN 342
>gi|420251756|ref|ZP_14754917.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
gi|398057279|gb|EJL49251.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
Length = 747
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 244 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 294
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 295 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 354
Query: 534 TGNK 537
G +
Sbjct: 355 AGTR 358
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D A+AF R H G R +G+P H T I+ L VD V+
Sbjct: 15 PSFDD-----ALAFV-REHAGDARLSSGEPLADHAAGTAAIMRTL-------NVDPPAVL 61
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A L + +I + FG+EVA+LV V +L + + R + + + +
Sbjct: 62 AAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 121
Query: 214 AND-----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
A LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA
Sbjct: 122 ARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAPLA 181
Query: 269 SRLGLWALKAELEDLCF 285
+RLG+W LK ELEDL
Sbjct: 182 NRLGIWQLKWELEDLAL 198
>gi|172060450|ref|YP_001808102.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria MC40-6]
gi|171992967|gb|ACB63886.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MC40-6]
Length = 739
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + + VA E L+ EL + ++IP +S R
Sbjct: 190 LEDLAFRFEDPVTYKRIAKLLDEKRVEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 244
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 245 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 295
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 296 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + TG+ H T I+ L + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSTGELLADHSAGTASIMRTL--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
L ++D L E FG+EVA+LV+ V +L + + R + G EE
Sbjct: 66 LTPHLNDPEREL---TERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRT 122
Query: 217 ----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 272
LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG
Sbjct: 123 QIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLG 182
Query: 273 LWALKAELEDLCF 285
+W LK ELEDL F
Sbjct: 183 IWQLKWELEDLAF 195
>gi|359797514|ref|ZP_09300098.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
gi|359364625|gb|EHK66338.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
Length = 758
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDE---------------SDIEASSSLSKDTDDHNPL 565
W YKE G K +S+ E SD+E + + DT P+
Sbjct: 362 WRYKEAGAKGGQVSASSEYDRQLAWMRQLLAWNSDVEGGAEAAPDTAKAAPV 413
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+++ GQ TG+P H RILA L + RA
Sbjct: 24 GLDADGLALLD-----RAVAWSEPRFEGQNALTGEPLAGHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG E+A+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDFMAPAPSLRNDPVATAFGAEIARLVQGARALLRLGVVARQASDAAAESGSQ 138
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ R MLL M D R+VL++LA RL +R + A+ETL ++ LA+
Sbjct: 139 KEMQ----RKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSPDFARETLDLYAPLAN 194
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K E+EDL F L+
Sbjct: 195 RLGIWQIKWEMEDLSFRFLE 214
>gi|167562969|ref|ZP_02355885.1| GTP diphosphokinase [Burkholderia oklahomensis EO147]
gi|167570157|ref|ZP_02363031.1| GTP diphosphokinase [Burkholderia oklahomensis C6786]
Length = 748
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I + VA E L++EL + ++ +S R
Sbjct: 192 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAEAIERLQRELAAAH-----IQAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 95/200 (47%), Gaps = 27/200 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D +AF R H G R +G+ H T I+ L VD V
Sbjct: 14 PSFDD-----VLAFV-REHAGDARLSSGELLADHAAGTSTIMQRL-------NVDPPAVQ 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHE 212
A L + + I E FGDEVA+LV V +L + + LR + V+ G
Sbjct: 61 AAALFALAPYLSDPEKQIAERFGDEVARLVTDVRKLLRLGTVSLRAAQSAPVDAGRDAQA 120
Query: 213 EA----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL---PPAKARAVAQETLLIWC 265
E LR MLL D RVVLI+LA RL ++R A PP A A+ETL I+
Sbjct: 121 ERRAQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDA---ARETLEIYA 177
Query: 266 SLASRLGLWALKAELEDLCF 285
LA+RLG+W LK ELEDL F
Sbjct: 178 PLANRLGIWQLKWELEDLAF 197
>gi|171318441|ref|ZP_02907596.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
gi|171096355|gb|EDT41257.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
Length = 740
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRVEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 245
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FG+EVA+LV+ V +L + + LR + + G +E LR MLL
Sbjct: 77 LTERFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDAGRDAAQERRTQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVGRETLDIYAPLANRLGIWQLKWELEDLAF 196
>gi|390571447|ref|ZP_10251688.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
gi|389936550|gb|EIM98437.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
Length = 746
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 293
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 534 TGNK 537
G +
Sbjct: 354 AGTR 357
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 21/197 (10%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F+D A+AF R H G R +G+P H T I+ L VD V+
Sbjct: 14 PSFDD-----ALAFV-REHAGDARLSSGEPLADHAAGTAAIMRTL-------NVDPPAVL 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A L + +I + FG+EVA+LV V +L + + R + + + +
Sbjct: 61 AAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 120
Query: 214 AND-----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
A LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA
Sbjct: 121 ARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAPLA 180
Query: 269 SRLGLWALKAELEDLCF 285
+RLG+W LK ELEDL
Sbjct: 181 NRLGIWQLKWELEDLAL 197
>gi|83644638|ref|YP_433073.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
gi|83632681|gb|ABC28648.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
Length = 746
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 14/146 (9%)
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
AL +EL S G++ LS R K +YSI+ KM RK + +VYD RA+R++V
Sbjct: 247 ALRQELEAS-----GIKAELSGRAKHIYSIWRKMHRKGIDFSQVYDIRAIRILV------ 295
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
P+I+ CYS L +VH LW I EFDDYI NPK +GYQSLHTAV GP G +EVQIRT
Sbjct: 296 ---PSIRDCYSALGVVHALWRHIPHEFDDYIANPKQNGYQSLHTAVVGPSGKIMEVQIRT 352
Query: 515 QKMHEYAEHGLAAHWLYKETGNKLQS 540
QKMHE AE G+ AHWLYK T + +S
Sbjct: 353 QKMHEEAELGVCAHWLYKGTDTQQKS 378
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
+++A +L+ V + SL + EEFG+EV+KL+ GVS+++ I+ L RH + LG
Sbjct: 84 SLIAAVLYRAVREGKLSLVRVNEEFGEEVSKLIEGVSQMAAISSL--RH---PIQGSVLG 138
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +++R ML+ M+DD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 139 QTQTQVDNIRRMLVTMIDDVRVALIKLAERTCAIRDVKNAGSDKRHRVAREVFDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQMRA 292
RLG+ LK ELEDL F L A
Sbjct: 199 HRLGIGYLKWELEDLSFRYLHETA 222
>gi|386347702|ref|YP_006045951.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta thermophila DSM 6578]
gi|339412669|gb|AEJ62234.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta thermophila DSM 6578]
Length = 662
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ DE+ VQ+A +A + H GQ R +G+PY++H + RILA L +G T++A
Sbjct: 18 YTDEEKARVQEAARWAAQLHEGQLRASGEPYISHPLEVARILADLGMDTG-----TLIAA 72
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D + I FG+EVA LV GV+++S L R+R+I A
Sbjct: 73 LLHDTIEDTGATRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQA---------AE 120
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R MLL M D RV+LIKLAD+LHNMRT+ LPPAK +A+A E L I+ LA RLG+ +
Sbjct: 121 SIRKMLLAMAKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAERLGMSS 180
Query: 276 LKAELEDLCFAVLQ 289
LK ELEDL LQ
Sbjct: 181 LKDELEDLALKHLQ 194
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIKVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 529 WLYKE 533
WLYKE
Sbjct: 342 WLYKE 346
>gi|311104723|ref|YP_003977576.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
gi|310759412|gb|ADP14861.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
Length = 755
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%), Gaps = 9/140 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI++KMR K + ++YD RALR++V D G CY+ L
Sbjct: 251 GVEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDDVRG---------CYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPISEEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A+ GQ TG+P H RILA L + RA
Sbjct: 24 GLDADGMALID-----QAVAWAEPRFEGQQALTGEPLAGHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG E+A+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDLMAPAPSLRNDPVAATFGAEIARLVQGTRALLRLGVVARQASDAAAESGS- 137
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ R MLL M D R+VL++LA RL +R + A+ETL ++ LA+
Sbjct: 138 ---QKEMQRKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSTDFARETLDLYAPLAN 194
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K E+EDL F L+
Sbjct: 195 RLGIWQIKWEMEDLAFRFLE 214
>gi|258653541|ref|YP_003202697.1| (p)ppGpp synthetase I SpoT/RelA [Nakamurella multipartita DSM
44233]
gi|258556766|gb|ACV79708.1| (p)ppGpp synthetase I, SpoT/RelA [Nakamurella multipartita DSM
44233]
Length = 822
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 119/196 (60%), Gaps = 19/196 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + +++Q+A A++AH GQFR++GDPY+TH + ILA L T+VA
Sbjct: 112 HPKADLKELQRAYEVAEQAHAGQFRRSGDPYITHPLAVATILADL-----GMDTTTLVAA 166
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L + +FGDEVA LV GV++L ++ T EA
Sbjct: 167 LLHDTVEDTEYTLEKVTADFGDEVAHLVDGVTKLD----------KVRFGDAT----EAE 212
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M +DPRV+++KLADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 213 TIRKMIIAMAEDPRVLVVKLADRLHNMRTMRFLPPDKQARKARETLEVLAPLAHRLGMAT 272
Query: 276 LKAELEDLCFAVLQMR 291
+K ELEDL F++L +
Sbjct: 273 IKWELEDLAFSILHSK 288
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 387 TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 446
T L A + LE EL + + IPG V R K YSI+ KM+ + +++D A+R+
Sbjct: 306 TYLAAVTQQLEAEL--TAAKIPGQVV---GRGKHYYSIYQKMKARGREFDEIHDLVAVRI 360
Query: 447 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 506
+VG +++ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G
Sbjct: 361 LVG---------SVRECYAAMGVVHALWAPMPGRFKDYIAQPRYGVYQSLHTTVIGPEGK 411
Query: 507 ALEVQIRTQKMHEYAEHGLAAHWLYKET-GNKLQSISSMDE 546
LEVQIRT MH AE+G+AAHW YKET G + +++DE
Sbjct: 412 PLEVQIRTFDMHHTAEYGIAAHWRYKETRGTHAGASATVDE 452
>gi|307719606|ref|YP_003875138.1| GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
gi|306533331|gb|ADN02865.1| probable GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
Length = 662
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 20/194 (10%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ DE+ VQ+A +A + H GQ R +G+PY++H + RILA L +G T++A
Sbjct: 18 YTDEEKARVQEAARWAAQLHEGQLRASGEPYISHPLEVARILADLGMDTG-----TLIAA 72
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D + I FG+EVA LV GV+++S L R+R+I A
Sbjct: 73 LLHDTIEDTGTTRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQA---------AE 120
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R MLL M D RV+LIKLAD+LHNMRT+ LPPAK +A+A E L I+ LA RLG+ +
Sbjct: 121 SIRKMLLAMAKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAERLGMSS 180
Query: 276 LKAELEDLCFAVLQ 289
LK ELEDL LQ
Sbjct: 181 LKDELEDLALKHLQ 194
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIAVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 529 WLYKE 533
WLYKE
Sbjct: 342 WLYKE 346
>gi|309782525|ref|ZP_07677249.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|404396238|ref|ZP_10988033.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
gi|308918862|gb|EFP64535.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|348614727|gb|EGY64266.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
Length = 741
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 519 EYAEHGLAAHWLYKETGNK 537
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHD 159
EQV +AI + TG+P +H T IL L VDT + A L
Sbjct: 17 EQVARAIEYLAANAADSVTLTGEPLESHARGTIAILEGL-------RVDTPSLQAAALFL 69
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEA 214
+ A ++ ++E FG EV KLV V +L I + + N+ +
Sbjct: 70 LPTLAMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQV 129
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
LR MLL D RVVLI+LA RL ++R + + +A+ETL I+ LA+RLG+W
Sbjct: 130 EALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIW 189
Query: 275 ALKAELEDLCF 285
LK ELEDL F
Sbjct: 190 QLKWELEDLGF 200
>gi|422323088|ref|ZP_16404128.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
gi|317401930|gb|EFV82535.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
Length = 652
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 140 GIEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 190
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 191 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 250
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE G K +++ E D
Sbjct: 251 WRYKEAGAKGGQVAASSEYD 270
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL M D R+VL++LA RL +R + A A+ETL ++ LA+RLG+W +K
Sbjct: 32 RKMLLAMAADLRIVLMRLASRLRTLRWHAESKTPCSTAFARETLDLYAPLANRLGIWQIK 91
Query: 278 AELEDLCFAVLQ 289
E+EDL F L+
Sbjct: 92 WEMEDLAFRFLE 103
>gi|187929058|ref|YP_001899545.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12J]
gi|187725948|gb|ACD27113.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12J]
Length = 741
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 519 EYAEHGLAAHWLYKETGNK 537
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVA 154
P EQV +AI + TG+P +H T IL L VDT + A
Sbjct: 12 PGSTAEQVARAIEYLAANAADSVTLTGEPLESHARGTIAILEGL-------RVDTPSLQA 64
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTL 209
L + A +S ++E FG EV KLV V +L I + + N+
Sbjct: 65 AALFLLPTLAMDSEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEA 124
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ LR MLL D RVV+I+LA RL ++R + + +A+ETL I+ LA+
Sbjct: 125 RRAQVEALRKMLLAFAQDIRVVMIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLAN 184
Query: 270 RLGLWALKAELEDLCF 285
RLG+W LK ELEDL F
Sbjct: 185 RLGIWQLKWELEDLGF 200
>gi|241663243|ref|YP_002981603.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12D]
gi|240865270|gb|ACS62931.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12D]
Length = 741
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 519 EYAEHGLAAHWLYKETGNK 537
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHD 159
EQV +AI + TG+P +H T IL L VDT + A L
Sbjct: 17 EQVARAIEYLVANAADSVTLTGEPLESHARGTVAILEGL-------RVDTPSLQAAALFL 69
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEA 214
+ A ++ ++E FG EV KLV V +L I + + N+ +
Sbjct: 70 LPTLAMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQV 129
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
LR MLL D RVVLI+LA RL ++R + + +A+ETL I+ LA+RLG+W
Sbjct: 130 EALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIW 189
Query: 275 ALKAELEDLCF 285
LK ELEDL F
Sbjct: 190 QLKWELEDLGF 200
>gi|373495922|ref|ZP_09586472.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
gi|404369252|ref|ZP_10974596.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|313688538|gb|EFS25373.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|371966563|gb|EHO84049.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
Length = 726
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A+ FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLALYFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I+ FGD VA LV GV++L ++ GT +E ++R M+
Sbjct: 76 EDTLITLADIKYNFGDTVATLVDGVTKLK------------SLPNGTKKQDE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + RV++IKL+DRLHNMRT+ + P K A++QETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMAQNLRVIIIKLSDRLHNMRTLKYMKPEKQIAISQETLDIYAPLAHRLGIAKIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L+
Sbjct: 182 DLCLRYLK 189
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M AE G+AAH
Sbjct: 277 VIHSHFRPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTEDMDRVAEEGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WSYKE 341
>gi|340758948|ref|ZP_08695526.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
gi|251835906|gb|EES64444.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
Length = 726
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A+ FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLALYFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I+ FGD VA LV GV++L ++ GT +E ++R M+
Sbjct: 76 EDTLITLADIKYNFGDTVATLVDGVTKLK------------SLPNGTKKQDE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + RV++IKL+DRLHNMRT+ + P K A++QETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMAQNLRVIIIKLSDRLHNMRTLKYMKPEKQIAISQETLDIYAPLAHRLGIAKIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L+
Sbjct: 182 DLCLRYLK 189
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT++M AE G+AAH
Sbjct: 277 VIHSHFKPVPGRFKDYIAVPKSNNYQSIHTTIVGPQGKFIEIQIRTEEMDRVAEEGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WSYKE 341
>gi|421482790|ref|ZP_15930370.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
gi|400199101|gb|EJO32057.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
Length = 764
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIEAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A GQ TG+P +H RILA L + RA
Sbjct: 24 GLDADGMAL-----IDQAVAWAIPRFEGQQALTGEPLASHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG EVA+LV G L + + R+ G+
Sbjct: 79 ALLAALPTDLMAPAPALRNDPVATAFGAEVARLVQGTRALLRLGVVARQASDAEAESGSQ 138
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ R MLL M D R+VL++LA RL +R + A A+ETL ++ LA+
Sbjct: 139 KEMQ----RKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSIAFARETLDLYAPLAN 194
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K E+EDL F L+
Sbjct: 195 RLGIWQIKWEMEDLAFRFLE 214
>gi|149927844|ref|ZP_01916095.1| RelA/SpoT protein [Limnobacter sp. MED105]
gi|149823466|gb|EDM82697.1| RelA/SpoT protein [Limnobacter sp. MED105]
Length = 764
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 17/171 (9%)
Query: 393 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ +E+E I ++ + G+ +S R K +YSI++KMR K + K+YD RA
Sbjct: 234 EKRVEREAFIESAMASIKENLLLAGIHCEISGRPKHIYSIWNKMRGKGISFDKLYDVRAC 293
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V + CY+ L IVH LW PI EFDDYI PKP+GYQSLHT VQ
Sbjct: 294 RVIVD---------TVDDCYTALGIVHNLWTPISEEFDDYISKPKPNGYQSLHTVVQDET 344
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL 555
G LEVQIRT+ MH++AE+G+AAHW YKE+G + S E E +L
Sbjct: 345 GKTLEVQIRTEAMHQFAEYGVAAHWRYKESGKDGYTGESRAEGQFEERIAL 395
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 18/202 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F+ +V++A+ +A+ T +P + H + +LA L + +T +AG L
Sbjct: 27 FDAARVEEALNYARLHAADHILDTQEPAIQHMLAVADLLAEL-----RADANTRIAGALG 81
Query: 159 DVV--DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
+V D ES +E++FGDEV +++A + +L + ++ + ++
Sbjct: 82 PLVFFDKHLES--QMEKKFGDEVGRMLASLRKLFKMRSMVGPSATRTTIETLRWADQIET 139
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK---------ARAVAQETLLIWCSL 267
LR MLL M D RV++I+L RL +R + K A + AQETL ++ L
Sbjct: 140 LRKMLLAMSTDIRVIMIRLCSRLQTLRHFTSHEDIKNEKGSLWPYAVSHAQETLDLYAPL 199
Query: 268 ASRLGLWALKAELEDLCFAVLQ 289
A+RLGLW LK ELEDL F +LQ
Sbjct: 200 ANRLGLWQLKWELEDLSFRILQ 221
>gi|254514119|ref|ZP_05126180.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
gi|219676362|gb|EED32727.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
Length = 744
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 93/138 (67%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK +G +VYD RALR++V P ++ CY+ L
Sbjct: 257 GIEFEVSGRSKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------PELKDCYATLG 307
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTHEMHEEAELGVCAH 367
Query: 529 WLYKETGNKLQSISSMDE 546
W YK T K S SS DE
Sbjct: 368 WRYKGTDTKRGSGSSYDE 385
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I + +ILA L + V+ ++AG+L+ V + + +E FG VA L+ GV R++
Sbjct: 71 IESAQILAEL-----RVGVNCLIAGLLYRAVREQRLEIRDVEARFGKVVADLLRGVLRMA 125
Query: 191 YINQLLRRHRRINVNQGTLG--HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL 248
I L R + LG + +++R ML+ +VDD +V LIKLA+R +R + +
Sbjct: 126 AIADL-----RNPSDTAVLGEAQRQRDNIRQMLVAIVDDVQVALIKLAERTCAIRAVKS- 179
Query: 249 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
+ VA++ ++ LA RLG+ LK ELEDL F L
Sbjct: 180 DKTRQELVARDVFDVYAPLAHRLGIGHLKWELEDLSFRYL 219
>gi|409405788|ref|ZP_11254250.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
gi|386434337|gb|EIJ47162.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
Length = 750
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CYS+L IVH +
Sbjct: 255 VSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------VKTCYSVLGIVHNI 305
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 306 WTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 365
Query: 534 TGNKLQSISSMDE 546
+G S DE
Sbjct: 366 SGGSNFSAQKYDE 378
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVDDACESLGSIEEEFGDEVA 180
+G L + +L L + R A +LH +D+ +EE FG E+A
Sbjct: 45 SGQNALQFAVSVATVLTALNVDAATRIAGLAFEAQMLHPELDE------KLEERFGKEIA 98
Query: 181 KLVAGVSRLSYINQLLRRHRRINV----NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLA 236
+LV V +L + L + + V N + LR MLL M D R VL++LA
Sbjct: 99 ELVGNVRQLMRFHSLSFQPQHQEVLRGKNAAQQAAAQVETLRKMLLAMATDMRAVLVRLA 158
Query: 237 DRLHNMRTIYALPPAKARAVAQ---ETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
R+ +R +A + A AQ +T ++ LA+RLG+W LK ELEDL F L+
Sbjct: 159 SRVATLR-YFAETKQENEASAQYARQTFDLYAPLANRLGIWQLKWELEDLSFRFLE 213
>gi|124385843|ref|YP_001026206.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10229]
gi|126448214|ref|YP_001080522.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10247]
gi|254358433|ref|ZP_04974706.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
gi|124293863|gb|ABN03132.1| GTP diphosphokinase [Burkholderia mallei NCTC 10229]
gi|126241084|gb|ABO04177.1| GTP diphosphokinase [Burkholderia mallei NCTC 10247]
gi|148027560|gb|EDK85581.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
Length = 745
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|167816074|ref|ZP_02447754.1| GTP pyrophosphokinase [Burkholderia pseudomallei 91]
gi|418387544|ref|ZP_12967400.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
gi|418553592|ref|ZP_13118411.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385371430|gb|EIF76609.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385376264|gb|EIF80962.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
Length = 745
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|319786299|ref|YP_004145774.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464811|gb|ADV26543.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 722
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G +S R K +YSI+ KM++K + + K+YD RA+RV+V D + CY+ L
Sbjct: 230 GFTAEISGRPKHIYSIWRKMQKKQLPLDKLYDLRAVRVMVAD---------VAACYAALG 280
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ GEFDDYI PKP+GY SLHTAV GP+G LEVQIRT++MHE AE G+AAH
Sbjct: 281 VVHSLWAPVPGEFDDYIARPKPNGYASLHTAVVGPEGRTLEVQIRTREMHEQAELGVAAH 340
Query: 529 WLYKET 534
W YKET
Sbjct: 341 WRYKET 346
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%)
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR +LL ++ D RVV + L+ +L MR LP + RA+AQ T I LA+RLG+W L
Sbjct: 121 LRRLLLSIIQDLRVVPVLLSRQLARMRAAGGLPGEERRALAQLTRDIHAPLANRLGIWQL 180
Query: 277 KAELEDLCFAVL 288
K ELEDL F L
Sbjct: 181 KWELEDLAFRFL 192
>gi|121599766|ref|YP_992868.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|167003092|ref|ZP_02268882.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|167894559|ref|ZP_02481961.1| GTP pyrophosphokinase [Burkholderia pseudomallei 7894]
gi|167919223|ref|ZP_02506314.1| GTP pyrophosphokinase [Burkholderia pseudomallei BCC215]
gi|254188580|ref|ZP_04895091.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|254297840|ref|ZP_04965293.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|386861980|ref|YP_006274929.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403518435|ref|YP_006652568.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
gi|418534127|ref|ZP_13099976.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|121228576|gb|ABM51094.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|157807669|gb|EDO84839.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|157936259|gb|EDO91929.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|243061342|gb|EES43528.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|385359986|gb|EIF65932.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|385659108|gb|AFI66531.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403074077|gb|AFR15657.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|407983412|ref|ZP_11164063.1| bifunctional (p)ppGpp synthase/hydrolase relA [Mycobacterium
hassiacum DSM 44199]
gi|407374955|gb|EKF23920.1| bifunctional (p)ppGpp synthase/hydrolase relA [Mycobacterium
hassiacum DSM 44199]
Length = 793
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 114/194 (58%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A++ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 78 YPKANLQLLQRAYEVAEQRHADQMRKSGDPYITHPLAVANILAEL-----EMDTTTLVAA 132
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L I EFG+EVA LV GV++L V GT EA
Sbjct: 133 LLHDTVEDTGYTLEEITAEFGEEVAHLVDGVTKLD------------KVALGTAA--EAE 178
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M+L M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 179 TIRKMILAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 238
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 239 VKWELEDLAFAILH 252
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 290 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 340
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 341 VHSLWQPIAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTFDMHKTAEYGIAAHW 400
Query: 530 LYKETGNK 537
YKE+ +
Sbjct: 401 RYKESKGR 408
>gi|53725295|ref|YP_102788.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|67641369|ref|ZP_00440149.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
gi|254178309|ref|ZP_04884964.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|254199740|ref|ZP_04906106.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|254206062|ref|ZP_04912414.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|52428718|gb|AAU49311.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|147749336|gb|EDK56410.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|147753505|gb|EDK60570.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|160699348|gb|EDP89318.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|238522292|gb|EEP85737.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAVQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|148265188|ref|YP_001231894.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter uraniireducens Rf4]
gi|146398688|gb|ABQ27321.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter uraniireducens Rf4]
Length = 716
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 123/209 (58%), Gaps = 19/209 (9%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + + V+KA F + H GQ R +G+PYL H + ILA L K V TVV G+
Sbjct: 16 PACDLDLVRKAYVFCAKVHQGQTRLSGEPYLVHPMEVAGILADL-----KLDVPTVVTGL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD V+D +L +E FG EVA+LV GV+++ ++ T +A +
Sbjct: 71 LHDTVEDTLTTLEELEGMFGAEVARLVDGVTKIG------------KIHFKTKEESQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R MLL M +D RV+L+KLADRLHNMRT+ P K R++A+ETL I+ +A+RLG+ +
Sbjct: 119 FRKMLLAMANDIRVILVKLADRLHNMRTLQYQPEPKQRSIAKETLDIYAPIANRLGISWV 178
Query: 277 KAELEDLCFAVL--QMRADLASMWSPRNR 303
K+ELEDL F L Q+ DLAS + + +
Sbjct: 179 KSELEDLSFRYLDPQIYYDLASKVTKKKK 207
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K LYSI+ KM+ + V I ++YD A+RV+V D I+ CY +L
Sbjct: 228 GITGEVSGRSKHLYSIYRKMQSRSVDIDEIYDLVAIRVMVED---------IRECYEVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W PI G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE G+AAH
Sbjct: 279 IIHSTWKPIPGRFKDYIAMPKGNMYQSLHTTVIGPYGERMEVQIRTGEMHRVAEAGIAAH 338
Query: 529 WLYKE 533
W YKE
Sbjct: 339 WKYKE 343
>gi|217423675|ref|ZP_03455176.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
gi|217393533|gb|EEC33554.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
Length = 774
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 266 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 316
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 317 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 376
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 377 RYKEAGAR 384
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 47 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 100
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEA----NDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 101 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 158
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 159 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 218
Query: 280 LEDLCF 285
LEDL F
Sbjct: 219 LEDLAF 224
>gi|167582119|ref|ZP_02374993.1| GTP pyrophosphokinase [Burkholderia thailandensis TXDOH]
Length = 747
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLPSGELLADHATGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LV V +L + + LR + + V+ G E LR
Sbjct: 74 --PEKQIAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRK 131
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 280 LEDLCF 285
LEDL F
Sbjct: 192 LEDLAF 197
>gi|328951506|ref|YP_004368841.1| (p)ppGpp synthetase I SpoT/RelA [Marinithermus hydrothermalis DSM
14884]
gi|328451830|gb|AEB12731.1| (p)ppGpp synthetase I, SpoT/RelA [Marinithermus hydrothermalis DSM
14884]
Length = 735
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 118/187 (63%), Gaps = 15/187 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+VQ+A+ FA AH GQ RK+GDP++TH + ILA L K DT++AG+LHD V+
Sbjct: 29 RVQEALEFAFTAHDGQHRKSGDPFITHPVAVAGILAEL-----KMDEDTLIAGLLHDTVE 83
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D +L +IE FG V ++V G +++S + ++ ++ E+A +LR M +
Sbjct: 84 DTDVTLDAIEARFGPTVRRIVEGETKVSKLPKIAE----------SIEDEQAENLRQMFI 133
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M +D R++++KLADRLHNMRT+ +PP K + +++ETL I+ LA RLG+ +K ELED
Sbjct: 134 AMTEDVRIIIVKLADRLHNMRTLEFMPPEKQQRISRETLEIFAPLAHRLGIGQIKWELED 193
Query: 283 LCFAVLQ 289
L F L
Sbjct: 194 LAFRYLH 200
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 411 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSL 466
E T++ R K LYSI+ KM R + ++YD ALRV++ + + A Q CY +
Sbjct: 245 EYTVTGRTKHLYSIWKKMERDGKTLEQIYDLLALRVILDPRPSSDPEEAKAREKQVCYHV 304
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
+ +VH LW PI G DYI PKP+GYQSLHT V G LEVQIRT++MH AE+G+A
Sbjct: 305 IGLVHALWQPIPGRVKDYIAMPKPNGYQSLHTTVITWQGMPLEVQIRTREMHRIAEYGIA 364
Query: 527 AHWLYKE 533
AHWLYKE
Sbjct: 365 AHWLYKE 371
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 703 VFEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE 750
++G P++ + R +A + A + +V LR + W+++ S
Sbjct: 340 TWQGMPLEVQIRTREMHRIAEYGIAAHWLYKEGLTNPEEVKRRVSWLRAIQEWQQEFSSS 399
Query: 751 ----ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GK 805
++ + LGG+ V V P G+I+ L G+T D A + E G
Sbjct: 400 REFVEAVTKDLLGGR-------------VFVFTPKGQIINLPKGATPVDFAYHIHTEVGH 446
Query: 806 LVL---VNGQLVLPNTELKDGDIVEV 828
++ VNG++V + EL++ DIVE+
Sbjct: 447 SMIGAKVNGRIVPLSYELQNADIVEI 472
>gi|307730403|ref|YP_003907627.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1003]
gi|307584938|gb|ADN58336.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1003]
Length = 747
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHQFAEYGVAAHWRYKEAGTR 357
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPTPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
>gi|121997760|ref|YP_001002547.1| (p)ppGpp synthetase I SpoT/RelA [Halorhodospira halophila SL1]
gi|121589165|gb|ABM61745.1| (p)ppGpp synthetase I, SpoT/RelA [Halorhodospira halophila SL1]
Length = 729
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 121/207 (58%), Gaps = 20/207 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQV A F+ AH GQ R++G+PY+TH I RILA + + + VVA +LHDV+
Sbjct: 40 EQVYDAYRFSAAAHEGQRRRSGEPYITHPIAVARILAEM-----RLDAEAVVAALLHDVI 94
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I E FG++VA+LV GVS+L I+ + +A R M+
Sbjct: 95 EDTPTAKERIAERFGEQVAELVDGVSKLGAIDFQSKEE------------AQAESFRKMI 142
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRTI+ + P K R +A+ETL I+ +A RLG+ +L+ ELE
Sbjct: 143 LAMAKDIRVILIKLADRLHNMRTIWIMRPEKRRRIARETLDIYAPIAQRLGINSLRTELE 202
Query: 282 DLCFAV---LQMRADLASMWSPRNRVG 305
DL FA L+ RA + R R G
Sbjct: 203 DLGFAAHYPLRYRALKEKLARQRGRRG 229
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K L+SI+ KM +K + V+D RVVV + CY +L
Sbjct: 247 GIQAEVVGREKHLWSIYCKMAQKQLNFRDVFDVYGFRVVVD---------TVDECYRVLG 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H L+ P G DYI PK +GYQSLHT + GP LE QIRT+ MH AE G+AAH
Sbjct: 298 ILHGLYKPRPGRIKDYIAIPKANGYQSLHTTLVGPHRIRLEAQIRTRDMHAVAESGIAAH 357
Query: 529 WLYK---ETGNKLQ 539
W YK E+GN Q
Sbjct: 358 WFYKDAGESGNTAQ 371
>gi|167911198|ref|ZP_02498289.1| GTP diphosphokinase [Burkholderia pseudomallei 112]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 89 DGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSG 145
D + P +D +AF R H G R +G+ H T I+ L P +
Sbjct: 4 DSASTSAAPSLDD-----VLAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPAT 57
Query: 146 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINV 204
+ A +A L D I E FGDEVA LVA V +L + + LR + V
Sbjct: 58 QAAALFALAPYLRD-------PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPV 110
Query: 205 NQGTLGHEE----ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 260
+ G E LR MLL D RVVLI+LA RL ++R A VA+ET
Sbjct: 111 DAGRDAQAERRAQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARET 170
Query: 261 LLIWCSLASRLGLWALKAELEDLCF 285
L I+ LA+RLG+W LK ELEDL F
Sbjct: 171 LEIYAPLANRLGIWQLKWELEDLAF 195
>gi|53719559|ref|YP_108545.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126439059|ref|YP_001058750.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126454760|ref|YP_001066004.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134282417|ref|ZP_01769122.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|167738853|ref|ZP_02411627.1| GTP diphosphokinase [Burkholderia pseudomallei 14]
gi|167845982|ref|ZP_02471490.1| GTP diphosphokinase [Burkholderia pseudomallei B7210]
gi|167902962|ref|ZP_02490167.1| GTP diphosphokinase [Burkholderia pseudomallei NCTC 13177]
gi|237812014|ref|YP_002896465.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242314558|ref|ZP_04813574.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254180006|ref|ZP_04886605.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|254197483|ref|ZP_04903905.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|254260414|ref|ZP_04951468.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|418541171|ref|ZP_13106668.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|418547411|ref|ZP_13112570.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
gi|52209973|emb|CAH35945.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126218552|gb|ABN82058.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126228402|gb|ABN91942.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134246455|gb|EBA46544.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|169654224|gb|EDS86917.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|184210546|gb|EDU07589.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|237506121|gb|ACQ98439.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242137797|gb|EES24199.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254219103|gb|EET08487.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|385358680|gb|EIF64665.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|385361196|gb|EIF67084.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|78066085|ref|YP_368854.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. 383]
gi|77966830|gb|ABB08210.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. 383]
Length = 744
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVV 153
P F+D +AF R G R +G+ H T I+ L PS+ + A V+
Sbjct: 13 PSFDD-----VLAFV-RERAGDVRLSSGELLADHSAGTASIMRTLNVDPSAMQAAALFVL 66
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHE 212
L D + + E FGDEVA+LV+ V +L + + LR + + G E
Sbjct: 67 TPHLSDPERE-------LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAVPDAGRDAAE 119
Query: 213 EAND----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA
Sbjct: 120 ERRTQIEALRKMLLSFAQDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLA 179
Query: 269 SRLGLWALKAELEDLCF 285
+RLG+W LK ELEDL F
Sbjct: 180 NRLGIWQLKWELEDLAF 196
>gi|76808714|ref|YP_333288.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
gi|76578167|gb|ABA47642.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
Length = 716
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 208 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 258
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 259 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 318
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 319 RYKEAGAR 326
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 225
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 47 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 106
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 107 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 166
>gi|254245610|ref|ZP_04938931.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
gi|124870386|gb|EAY62102.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P F+D +AF + +G+ H T I+ ML + A+ +
Sbjct: 13 PSFDD-----VLAFVRERAGDARLSSGELLADHSAGTAAIMRML--NVDPHAMQAAALFV 65
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
L + D L E FGDEVA+LV+ V +L + + R + N + G + A +
Sbjct: 66 LTPHLSDPEREL---TERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEE 121
Query: 217 -------LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
LR MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+
Sbjct: 122 RRTQIEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLAN 181
Query: 270 RLGLWALKAELEDLCF 285
RLG+W LK ELEDL F
Sbjct: 182 RLGIWQLKWELEDLAF 197
>gi|206559847|ref|YP_002230611.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
gi|198035888|emb|CAR51779.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
Length = 727
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 221 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 271
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 272 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 331
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 332 RYKEAGAR 339
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FGDEVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 60 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 119
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 120 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 179
>gi|107022546|ref|YP_620873.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia AU 1054]
gi|105892735|gb|ABF75900.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia AU 1054]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 223
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPGVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 284 CF 285
F
Sbjct: 196 AF 197
>gi|186476317|ref|YP_001857787.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phymatum STM815]
gi|184192776|gb|ACC70741.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phymatum STM815]
Length = 746
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IKAEVSGRPKHIYSIWRKMRGKQLDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGTR 357
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 21/197 (10%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVV 153
P F D A+AF R H G+ R +G+P H T I+ L VD V+
Sbjct: 14 PSFED-----ALAFV-RDHAGEARLSSGEPLAEHAAGTAAIMRTL-------NVDPPAVL 60
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A L + +I + FG+EVA+LV+ V +L + + R + + + +
Sbjct: 61 AAALFSLTPHLQNPEQTIADNFGEEVAQLVSDVRKLLRLGTVSMRAAQNAMPEAGRDAQA 120
Query: 214 AND-----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
A LR MLL D RVVLI+LA RL ++R A + VA+ETL I+ LA
Sbjct: 121 ARRVQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLA 180
Query: 269 SRLGLWALKAELEDLCF 285
+RLG+W LK ELEDL F
Sbjct: 181 NRLGIWQLKWELEDLAF 197
>gi|170732801|ref|YP_001764748.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia MC0-3]
gi|169816043|gb|ACA90626.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia MC0-3]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 223
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVGLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 284 CF 285
F
Sbjct: 196 AF 197
>gi|295677049|ref|YP_003605573.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1002]
gi|295436892|gb|ADG16062.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1002]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVACE-EALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPDTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAH-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKQLDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 RKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 94/188 (50%), Gaps = 16/188 (8%)
Query: 106 KAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVD 162
+A+AF R H G+ R +G+ H T I+ L P + A + LHD
Sbjct: 18 EAMAFV-REHAGEVRLSSGELLADHAAGTASIMRKLNVDPPAVLAAALFALTPHLHD--- 73
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----L 217
E + I + FG+EVA+LV V +L + + R + + + + A L
Sbjct: 74 --PERV--IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEAL 129
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK
Sbjct: 130 RKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLK 189
Query: 278 AELEDLCF 285
ELEDL F
Sbjct: 190 WELEDLAF 197
>gi|116689495|ref|YP_835118.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia HI2424]
gi|116647584|gb|ABK08225.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia HI2424]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 223
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 284 CF 285
F
Sbjct: 196 AF 197
>gi|149374702|ref|ZP_01892476.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
gi|149361405|gb|EDM49855.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 19/179 (10%)
Query: 361 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 420
++LH+ A +K AK++ + + S + K+ L+++ G++ LS R K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLDRESYIKRVITTIKDELVAS----GIDGELSGRAKH 267
Query: 421 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 480
+YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L IVH LW I E
Sbjct: 268 IYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALGIVHTLWRHIPNE 318
Query: 481 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET--GNK 537
FDDY+ NPK +GYQSLHTAV GP+G +EVQIRTQ MHE AE G+ AHWLYK T GN+
Sbjct: 319 FDDYVANPKENGYQSLHTAVIGPEGKVMEVQIRTQAMHEEAELGVCAHWLYKGTDKGNR 377
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA IL+ V + L I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAILYRAVREERIPLEKIRKEFGDEVAGLIDGVQQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QTEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKNAPEEKRMRVAREVFDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSSPPLDERTA 324
RLG+ +K ELEDL F L A +A + + +R Y +R+ T + DE A
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHETAYKKIAKLLDEKRLDRESYIKRVITTIK----DELVA 254
Query: 325 SD-DESFTTFDEHVLSM 340
S D + +H+ S+
Sbjct: 255 SGIDGELSGRAKHIYSI 271
>gi|421865372|ref|ZP_16297052.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|444361037|ref|ZP_21162189.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|444365636|ref|ZP_21165760.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
gi|358074835|emb|CCE47930.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|443598684|gb|ELT67015.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|443605805|gb|ELT73627.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 225
+ E FGDEVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
>gi|42523075|ref|NP_968455.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus HD100]
gi|39575280|emb|CAE79448.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus HD100]
Length = 738
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 19/191 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + ++KA +F+++ H GQ R++G+PY++H + ILA +DT+ G
Sbjct: 29 YPNADLKIIEKAYSFSEKMHEGQIRRSGEPYISHPLSVAAILADF-----HLDLDTIATG 83
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L I EFGD +A LV GV++ I Q+ ++ HE +
Sbjct: 84 LLHDTVEDTAATLEDIRREFGDVIAHLVDGVTK---IGQMKFKN----------SHEKQG 130
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++R M++ M D RVVL+KLADRLHNMRT+ +P K +A ETL I+C LA R+G+
Sbjct: 131 ENIRKMIVAMGKDVRVVLVKLADRLHNMRTLNFMPFEKQERIALETLEIYCPLAGRMGIS 190
Query: 275 ALKAELEDLCF 285
ALK ELEDLCF
Sbjct: 191 ALKIELEDLCF 201
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 32/208 (15%)
Query: 381 DAGIALTSLVACEEALEKELLISTSYIPGMEVT-------LSSRLKSLYSIFSKMRRKDV 433
D L + EA + + ++ G E+T + R K L+SI+ KM+ +++
Sbjct: 207 DMYYELVQQIKKTEAEQNRYIEEVKHLIGKELTKAGFRYEVYGRSKHLWSIYRKMQSRNI 266
Query: 434 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 493
+VYD A RV+V ++ CY+ L +VH LW PI G F D+I PK + Y
Sbjct: 267 DYDQVYDVLAFRVLV---------ESVAECYAALGLVHSLWKPIPGRFKDFIAMPKANNY 317
Query: 494 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASS 553
QSLHT V GP G +E+QIRT +MH AE G+AAHW YKE G MD+ D++ ++
Sbjct: 318 QSLHTTVMGPGGERIEIQIRTSEMHLVAEKGIAAHWKYKERG------KMMDDGDLQQAN 371
Query: 554 SLSKDTDDH----NP------LDTDLFQ 571
L H NP + TDLF+
Sbjct: 372 WLRDLVSWHQNVRNPDEFLDTVKTDLFE 399
>gi|293603983|ref|ZP_06686396.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
gi|292817587|gb|EFF76655.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
Length = 769
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSNEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 90 GVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
G+D G + + +A+A+A GQ TG+P +H RILA L + RA
Sbjct: 24 GLDADGVAL-----IDRAVAWAIPRFEGQHALTGEPLASHGAGVVRILAALHTDAATRAA 78
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+ A + + FG EVA+LV G L + + R+ + G+
Sbjct: 79 ALLAALPTDLMAPAPALRNDPVAAAFGAEVARLVQGTRALLRLGVVARQASDVEAESGSQ 138
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ R MLL M D R+VL++LA RL +R + A+ETL ++ LA+
Sbjct: 139 KEMQ----RKMLLAMAADLRIVLMRLASRLRTLRWHAESKAPCSTDFARETLDLYAPLAN 194
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K E+EDL F L+
Sbjct: 195 RLGIWQIKWEMEDLSFRFLE 214
>gi|310778489|ref|YP_003966822.1| (p)ppGpp synthetase I SpoT/RelA [Ilyobacter polytropus DSM 2926]
gi|309747812|gb|ADO82474.1| (p)ppGpp synthetase I, SpoT/RelA [Ilyobacter polytropus DSM 2926]
Length = 718
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 111/183 (60%), Gaps = 19/183 (10%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FAK H GQFRK+GD Y+ H I +IL + K DT+VAGILHD+V+D
Sbjct: 26 AYEFAKECHVGQFRKSGDEYIIHPIEVSKILINM-----KMDTDTIVAGILHDIVEDTLI 80
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 226
++ IE FG+ VAKLV GV++LS + + ++ HE ++R M++ M
Sbjct: 81 TVSDIEYNFGNSVAKLVDGVTKLSVLPKGTKKQ-----------HE---NIRKMIVAMAQ 126
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 286
D RVV+IKLADRLHNMRT+ +P K +++ETL I+ LA RLG+ +K ELEDL
Sbjct: 127 DIRVVIIKLADRLHNMRTLKYMPAHKQERISRETLEIFAPLAHRLGMAMIKCELEDLSLY 186
Query: 287 VLQ 289
L+
Sbjct: 187 YLE 189
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 14/145 (9%)
Query: 391 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
A ++ +EK LL + I G +S R K YSI+ KM K ++YD ALR++V +
Sbjct: 213 ATKKEIEKFLL--ENNIKG---EVSGRPKHFYSIYKKMYEKGKEFDEIYDLIALRIIV-E 266
Query: 451 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 510
G CY++L ++H + P+ G F DYI PK +GYQS+HT + GP G +EV
Sbjct: 267 TEGE--------CYNVLGVLHGNYKPVPGRFKDYIAVPKSNGYQSIHTTIVGPQGKFIEV 318
Query: 511 QIRTQKMHEYAEHGLAAHWLYKETG 535
QIRT++MH AE G+AAHW YKE G
Sbjct: 319 QIRTEEMHGIAEEGVAAHWSYKERG 343
>gi|254252559|ref|ZP_04945877.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
gi|124895168|gb|EAY69048.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
Length = 744
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + + +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQRELADAN-----IHADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 171 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 225
+ E FGDEVA+LV+ V RL ++ + ++ V + A LR MLL
Sbjct: 77 LTEHFGDEVARLVSDVRKLLRLGTVSLRVAQNAMPGVGRDAAAERRAQIEALRKMLLAFA 136
Query: 226 DDPRVVLIKLADRLHNMRTIYAL---PPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
D RVVLI+LA RL ++R A PP + VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPE---VARETLEIYAPLANRLGIWQLKWELED 193
Query: 283 LCF 285
L F
Sbjct: 194 LAF 196
>gi|426403554|ref|YP_007022525.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860222|gb|AFY01258.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 738
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 19/191 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + ++KA +F+++ H GQ R++G+PY++H + ILA +DT+ G
Sbjct: 29 YPNADLKIIEKAYSFSEKMHEGQIRRSGEPYISHPLSVAAILADF-----HLDLDTIATG 83
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L I EFGD +A LV GV++ I Q+ ++ HE +
Sbjct: 84 LLHDTVEDTAATLEDIRTEFGDVIAHLVDGVTK---IGQMKFKN----------SHEKQG 130
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++R M++ M D RVVL+KLADRLHNMRT+ +P K +A ETL I+C LA R+G+
Sbjct: 131 ENIRKMIVAMGKDVRVVLVKLADRLHNMRTLNFMPFEKQERIALETLEIYCPLAGRMGIS 190
Query: 275 ALKAELEDLCF 285
ALK ELEDLCF
Sbjct: 191 ALKIELEDLCF 201
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 25/173 (14%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G + R K L+SI+ KM+ +++ +VYD A RV+V ++ CY+ L
Sbjct: 242 GFRYEVYGRSKHLWSIYRKMQSRNIDYDQVYDVLAFRVLV---------ESVAECYAALG 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW PI G F D+I PK + YQSLHT V GP G +E+QIRT +MH AE G+AAH
Sbjct: 293 LVHSLWKPIPGRFKDFIAMPKANNYQSLHTTVMGPGGERIEIQIRTSEMHLVAEKGIAAH 352
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDH----NP------LDTDLFQ 571
W YKE G +D+SD++ ++ L H NP + TDLF+
Sbjct: 353 WKYKERG------KMVDDSDLQQANWLRDLVSWHQNVRNPDEFLDTVKTDLFE 399
>gi|114321589|ref|YP_743272.1| (p)ppGpp synthetase I SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
gi|114227983|gb|ABI57782.1| (p)ppGpp synthetase I, SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
Length = 730
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+QV +A F AH GQ R +G+PY+TH + RILA + + D++VA ILHDV+
Sbjct: 39 QQVYEAYRFGAEAHAGQRRLSGEPYITHPLAVARILAEM-----RMDGDSIVAAILHDVI 93
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +FGD+VA+LV GVS+L+ I+ + +A + R M+
Sbjct: 94 EDTPTAKEQLRSQFGDDVAELVDGVSKLTQIDF------------KSKAEAQAENFRKMV 141
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRTI+ + P K R +A+ETL I+ +A RLG+ ++ ELE
Sbjct: 142 LAMARDIRVILIKLADRLHNMRTIWVMAPHKRRRIARETLEIYAPIAQRLGINTVRVELE 201
Query: 282 DLCFAVL 288
DL FA L
Sbjct: 202 DLGFAAL 208
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 9/123 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K L+SI+ KM+ K + V+D RV+V ++ CY +L ++H L
Sbjct: 251 VSGREKHLWSIYQKMQTKGLNFRDVFDVYGFRVLV---------ESVDDCYRMLGVLHGL 301
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P G DYI PK +GYQSLHT + GP LEVQ+RT +M + AE G+AAHWLYK
Sbjct: 302 YKPRPGRVKDYIAIPKANGYQSLHTTLIGPHRIRLEVQVRTWEMDQVAESGIAAHWLYKS 361
Query: 534 TGN 536
GN
Sbjct: 362 EGN 364
>gi|167719851|ref|ZP_02403087.1| GTP diphosphokinase [Burkholderia pseudomallei DM98]
Length = 745
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHYLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-RKHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|291297171|ref|YP_003508569.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus ruber DSM 1279]
gi|290472130|gb|ADD29549.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus ruber DSM 1279]
Length = 750
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 148/273 (54%), Gaps = 28/273 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A+ FA RAH GQ RK+G+PY+ H + +ILA L V+T++AG+LHD ++
Sbjct: 41 QVREALEFAYRAHEGQQRKSGEPYIVHPVAVAQILAEL-----GLDVETLLAGLLHDTIE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D IEE FG V K+V G +++S + +L + +G + A DLR M +
Sbjct: 96 DTEVRPEDIEERFGAAVRKIVEGETKVSKLYKLAHAAQEDKHAEG----KHAEDLRQMFI 151
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M +D R++++KLADRLHN+RT+ +PP K + +A+ETL I+ LA RLG+ +K ELED
Sbjct: 152 AMAEDVRIIIVKLADRLHNLRTLEFMPPHKQQRIARETLEIYAPLAHRLGIGQVKLELED 211
Query: 283 LCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 342
L F L P N RR+ + + ER A+ + ++ +
Sbjct: 212 LSFRYL----------DPENYQALERRLKSHRA-----EREAAVQAAKEKLEQALARDFI 256
Query: 343 LLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKK 375
L +++ F++ RTK L + K E + K
Sbjct: 257 LKQSIKKFEVTG----RTKHLFSIWKKMEREGK 285
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 18/172 (10%)
Query: 368 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSK 427
KS A+++A VQ A L E+AL ++ ++ S I EVT R K L+SI+ K
Sbjct: 230 KSHRAEREA-AVQAAKEKL------EQALARDFILKQS-IKKFEVT--GRTKHLFSIWKK 279
Query: 428 MRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIPIDGEF 481
M R+ I ++YD ALRV++ + G P Q CY +L +VH LW PI G
Sbjct: 280 MEREGKTIEQIYDLLALRVILDPRQGP--DPEENSLREKQVCYHVLGLVHALWQPIPGRV 337
Query: 482 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
DYI PKP+GYQSLHT V +G LEVQIRT++MH AE G+AAHWLYKE
Sbjct: 338 KDYIAVPKPNGYQSLHTTVIAVNGLPLEVQIRTREMHRVAEFGVAAHWLYKE 389
>gi|385330532|ref|YP_005884483.1| (p)ppGpp synthetase SpoT/RelA [Marinobacter adhaerens HP15]
gi|311693682|gb|ADP96555.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Marinobacter adhaerens HP15]
Length = 757
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 268 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 318
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 319 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 378
Query: 529 WLYK--ETGNK 537
WLYK + GNK
Sbjct: 379 WLYKGMDKGNK 389
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 96 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 150
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 151 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 210
Query: 269 SRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
RLG+ +K ELEDL F L A +A + + +R GY +R+ + +
Sbjct: 211 HRLGIGHIKWELEDLSFRYLHGSAYKKIAKLLDEKRLDRDGYIKRVIETLQT 262
>gi|334143852|ref|YP_004537008.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalimicrobium cyclicum ALM1]
gi|333964763|gb|AEG31529.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium cyclicum
ALM1]
Length = 727
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 176/400 (44%), Gaps = 111/400 (27%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA---NDLRVMLLGMVDD 227
+ + F + KL+ G+ RL+ + H +A LR MLL M D
Sbjct: 80 LAKRFDPQSVKLIEGIRRLNQFKEF-----------DPSTHSDAVQTERLRQMLLAMTSD 128
Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
R++++KL R+ +R + P + +A ET LI+ LA+RLG+ LK ELEDL F
Sbjct: 129 IRMMVVKLGYRVARLRDLKNEPEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRF 188
Query: 288 LQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV 347
L+ P L ++ A++
Sbjct: 189 LE---------------------------PKLYKKIATE--------------------- 200
Query: 348 VPFDILSDRR-KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSY 406
L+D+R +R ++ +L IA + + +E +E + +
Sbjct: 201 -----LADKRVERENYIQNL-----------------IAYLTQMLADEGIEARVTGRPKH 238
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
I + +S + +SL S+ YD RALR+ V D + CY
Sbjct: 239 IYSIWKKMSRKTQSLDSL--------------YDLRALRIYVKD---------VTECYRC 275
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L +VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRTQ+MH++AE+G+A
Sbjct: 276 LSLVHEKWNFIRDEFDDYITSPKDNGYQSIHTVVIGPEGKTVEIQIRTQEMHQHAEYGIA 335
Query: 527 AHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 566
AHW YKE G + + E+ I + L + DD D
Sbjct: 336 AHWKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
>gi|357158631|ref|XP_003578190.1| PREDICTED: GTP pyrophosphokinase-like [Brachypodium distachyon]
Length = 708
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V +A A++AHHGQ R +GDP+L HC+ T +LA + +S V AG+L
Sbjct: 202 IFHEELVVRAFFEAEKAHHGQTRASGDPFLQHCVETAVLLAKIGANS-----TVVSAGLL 256
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 257 HDTIDDSFVDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRTAEADRL 310
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNM+T+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 311 HTMLLAMAD-ARAVLIKLADRVHNMKTLEALPLVKQQRFAKETMEIFVPLANRLGIASWK 369
Query: 278 AELEDLCFAVLQ 289
+LE+LCF L
Sbjct: 370 DQLENLCFKHLN 381
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 78/121 (64%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R K+LYS++SKM +K++ + +V+D LR+VV DK + CY L++VH+
Sbjct: 421 NLSGRHKNLYSVYSKMLKKNLTMDEVHDIHGLRLVV-DKE--------EDCYQALEVVHK 471
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 472 LWPQVTGRFKDYISRPKLNGYRSLHTVVLSEGVHPFEVQIRTKEMHLQAEYGFAAHWRYK 531
Query: 533 E 533
E
Sbjct: 532 E 532
>gi|358451268|ref|ZP_09161702.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
gi|357224501|gb|EHJ03032.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
Length = 745
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 256 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 306
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 366
Query: 529 WLYK--ETGNK 537
WLYK + GNK
Sbjct: 367 WLYKGMDKGNK 377
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
RLG+ +K ELEDL F L A +A + + +R GY +R+ + +
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKKIAKLLDEKRLDRDGYIKRVIETLQT 250
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera]
Length = 724
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF+++ V KA A+RAH GQ R +GDPYL HC+ T +LA + +S VV+G
Sbjct: 214 HKIFSEDFVVKAFYEAERAHRGQMRASGDPYLQHCVETAVLLAKIGANS-----TVVVSG 268
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I FG VA LV GVS+LS +++L R + N T+ EA+
Sbjct: 269 LLHDTLDDSFMGYDDIFGTFGAGVADLVEGVSKLSQLSKLARDN---NTASKTV---EAD 322
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM T+ ALP K + A+ETL I+ LA+RLG+
Sbjct: 323 RLHTMFLAMAD-ARAVLIKLADRLHNMMTLDALPLGKQQRFAKETLEIFVPLANRLGIST 381
Query: 276 LKAELEDLCFAVLQ 289
K +LE+LCF L
Sbjct: 382 WKEQLENLCFKHLN 395
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI+ KM +K++ + +++D LR++V ++ + CY L +VHRL
Sbjct: 436 LSGRHKSLYSIYCKMLKKNMTMDEIHDIHGLRLIVENE---------EDCYKALGVVHRL 486
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G F DYI + K +GY+SLHT V+G LEVQIRT++MH AE+G AAHW YKE
Sbjct: 487 WSEVPGRFKDYIKHSKFNGYRSLHTVVRGEGMVPLEVQIRTREMHLQAEYGFAAHWRYKE 546
>gi|386359779|ref|YP_006058024.1| RelA/SpoT family (p)ppGpp synthetase [Thermus thermophilus JL-18]
gi|383508806|gb|AFH38238.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus thermophilus JL-18]
Length = 724
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+VQ+A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 23 KVQEAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 77
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVM 220
D + +E FG V ++V G +++S + +L L EE A DLR M
Sbjct: 78 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANLEGEERRAEDLRQM 126
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ LA RLG+ LK EL
Sbjct: 127 FIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPLAHRLGMGQLKWEL 186
Query: 281 EDLCFAVLQMRA 292
EDL F L A
Sbjct: 187 EDLSFRYLHPEA 198
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 14/174 (8%)
Query: 392 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 451
+E L ++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV++ K
Sbjct: 224 LQETLTRDELLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPK 280
Query: 452 NG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 507
T A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V +G
Sbjct: 281 PAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLP 340
Query: 508 LEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 554
LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 341 LEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 394
>gi|337285951|ref|YP_004625424.1| (p)ppGpp synthetase I SpoT/RelA [Thermodesulfatator indicus DSM
15286]
gi|335358779|gb|AEH44460.1| (p)ppGpp synthetase I, SpoT/RelA [Thermodesulfatator indicus DSM
15286]
Length = 727
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 118/185 (63%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA +AH GQ R++G+PYL H + ILA + K + T+ AG+LHD V+D
Sbjct: 28 VEKAYVFAAKAHAGQVRRSGEPYLAHPLSVAYILARM-----KLDLPTIAAGLLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I++ FG VA++V GV+++++++ R V H++A + R MLL
Sbjct: 83 TDVTIEDIKKHFGPVVAEIVDGVTKIAHLSA------RSKV------HKQAENFRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+L+KLADRLHNM+T+ +P K + +AQETL I+ LASRLG+ LK ELEDL
Sbjct: 131 MAEDLRVILVKLADRLHNMKTLEFMPDHKRKRIAQETLDIYAPLASRLGIDWLKQELEDL 190
Query: 284 CFAVL 288
F L
Sbjct: 191 SFMYL 195
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 12/128 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHK---VYDARALRVVVGDKNGTLHGPAIQCCYS 465
G+E + R K LYSIF K++R ++ I + +YD LRV+V ++ CY
Sbjct: 233 GIEAKVLGRRKHLYSIFRKLQRNNLAIDQLYLIYDIIGLRVIVK---------KVKECYE 283
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+L I+H LW PI G F DYI PK + YQSLHT V GP G +E+QIRT++M A G+
Sbjct: 284 VLGIIHSLWKPIPGRFKDYINLPKANMYQSLHTTVIGPGGRQMEIQIRTEEMDRVANEGI 343
Query: 526 AAHWLYKE 533
AAH+LYKE
Sbjct: 344 AAHFLYKE 351
>gi|28268682|dbj|BAC56909.1| RelA homolog [Suaeda japonica]
Length = 708
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 133/231 (57%), Gaps = 22/231 (9%)
Query: 65 GACLSTKVDFLWPKLEEQPGTFIV-DGVD------VTGYPIFNDEQVQKAIAFAKRAHHG 117
G+CL V+ L +E+ F+ D V+ + IF D+ V KA A++AH G
Sbjct: 161 GSCLDHDVEELTFNMEDH---FVFGDAVEELLASAQIRHKIFYDQFVIKAFYEAEKAHRG 217
Query: 118 QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGD 177
Q R +G PYL HC+ T A+L+ S G A V AG+LHD +DD+ + I FG
Sbjct: 218 QVRASGHPYLHHCMET----AVLLASIGANAT-VVAAGLLHDTIDDSFVTYDYILNIFGS 272
Query: 178 EVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLAD 237
VA LV GVS+LS++++L R + N T+ EA+ L M L M D R VLIKLAD
Sbjct: 273 GVADLVNGVSKLSHLSKLAREN---NTASKTI---EADRLHTMFLAMAD-ARAVLIKLAD 325
Query: 238 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
RLHNM T+ ALP K + A+ETL I+ LA+RLG+ K +LE+LCF L
Sbjct: 326 RLHNMMTLDALPSHKQQRFAKETLEIFAPLANRLGISTWKEQLENLCFKHL 376
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI KM +K + + +++D LR++V +++ C+ L +VH+L
Sbjct: 418 LSGRHKSLYSIHCKMSKKKLTMDQIHDIHGLRLIVENEDD---------CFRALKVVHQL 468
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G+F DYI PK +GYQSLHT V G LEVQIRT++MH AE+G AAHW YKE
Sbjct: 469 WSEVPGKFKDYIHCPKCNGYQSLHTVVVGEGMVPLEVQIRTKEMHLQAEYGFAAHWRYKE 528
Query: 534 TGNKLQSI 541
+K S
Sbjct: 529 GESKHSSF 536
>gi|237667442|ref|ZP_04527426.1| RelA/SpoT family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|237655790|gb|EEP53346.1| RelA/SpoT family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 737
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 14/190 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA FAK AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 ELVKKAYNFAKEAHKDQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S F EVA LV GV++L+ + ++ + T ++A+++R ML
Sbjct: 74 EDTDCSFEDASRMFNPEVANLVDGVTKLTKLGEMEYK---------TKEEQQADNVRKML 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 125 LAMAKDIRVIIIKLADRLHNMRTLKFMPANKQKNKAKETLDIYAPLAHRLGMSKIKWELE 184
Query: 282 DLCFAVLQMR 291
DLCF L +
Sbjct: 185 DLCFRYLHEK 194
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIDSDIDGRPKHFYSIYKKMVNKNKSIEEIFDLTAIRVLVN---------SVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|253995493|ref|YP_003047557.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
gi|253982172|gb|ACT47030.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
Length = 666
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 18/181 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
+ELL G++ +S R K +YSI +KMRRK++ +++D RA+R++V D
Sbjct: 244 EELLKQKLAQAGIQAEVSGRPKHIYSIINKMRRKNLDFEQLFDVRAVRILVED------- 296
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
++ CYS L +V LW PI GEFDDYI PK + Y+SLHTAV GP+G ALEVQIRT +M
Sbjct: 297 --VKDCYSALSLVQTLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPEGLALEVQIRTHEM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQSISSMDES-----DIEASSSLSKDTDD-HNPLDTDLFQ 571
H+Y+E G+AAHW YKE G +S + +DE I A + D+ D T+LFQ
Sbjct: 355 HQYSELGVAAHWRYKEGG---KSDNILDEKIAWLRQILAWKEGATDSSDLLEQFKTELFQ 411
Query: 572 K 572
+
Sbjct: 412 E 412
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 110/212 (51%), Gaps = 14/212 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y + + E V++A A A+ TG+P L H T IL L + ++++A
Sbjct: 29 YSLADVELVRQACQLATLAYDAHAELTGEPLLQHATSTAAILVSLNLDA-----ESIIAT 83
Query: 156 ILHDV---VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH- 211
IL+ V +D+ E+L + FG+ VA+LV G+ R++ + + R Q +
Sbjct: 84 ILYAVPAHIDNWQETL---KLRFGNNVARLVEGLLRITQVQEFSELERLQQQEQEDADNS 140
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
++ LR MLL MV D RVVLIKLA+R +R++ + +A+E I+ LA+RL
Sbjct: 141 KQVESLRKMLLAMVQDIRVVLIKLAERTQILRSLAGASREQQVLIAREIQGIFSPLANRL 200
Query: 272 GLWALKAELEDLCFAVL--QMRADLASMWSPR 301
G+W LK E+EDL L Q+ ++A + R
Sbjct: 201 GVWQLKWEMEDLSLRYLEPQLYKEVAKLLDSR 232
>gi|269926113|ref|YP_003322736.1| (p)ppGpp synthetase I SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
gi|269789773|gb|ACZ41914.1| (p)ppGpp synthetase I, SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
Length = 721
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 10/185 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A +AH G++RK+G+P+++H ++ ILA L K+ + + +LHD V+D
Sbjct: 22 IRRAYEVADKAHEGEYRKSGEPFISHPVNVALILADL-----KQDAQAIASALLHDTVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L IE FG EV++LV G+++L+ I + Q +A +LR M L
Sbjct: 77 TNLTLDDIETIFGPEVSRLVDGLTKLNKIRLSPDDEKDPKEQQA-----QAENLRKMFLA 131
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MV+DPRVVLIKLADRLHNMRTI LP K + A+ETL I+ LA RLG++ ++ELEDL
Sbjct: 132 MVEDPRVVLIKLADRLHNMRTIEHLPRDKQLSKARETLEIYAPLAGRLGIFKFRSELEDL 191
Query: 284 CFAVL 288
F VL
Sbjct: 192 SFKVL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K LYSI+ KM +K +++D LRV+ + + CY+ L
Sbjct: 234 GIPAEITGRRKHLYSIYRKMEQKQRSFDQIFDVLGLRVITDE---------VMQCYAALG 284
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H +W PI GEFDDYI PK S YQSLHTAV G DG LE+QIRT+ MHE AE+G+AAH
Sbjct: 285 VIHSIWRPIPGEFDDYIAMPKESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAH 344
Query: 529 WLYKE 533
W YKE
Sbjct: 345 WRYKE 349
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 692 EESEYWAVVSAV--FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLL 737
+ES Y ++ +AV +GKP++ + R VA + A + +++ L
Sbjct: 305 KESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAHWRYKEGKKANEAAEHRITWL 364
Query: 738 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 797
R +L W +++ +S S + E + V PNG+++ L G+T D A
Sbjct: 365 RQLLEWRDEVADAQEFVESM---------KSDLLQEHIYVFTPNGDVVELPRGATPIDFA 415
Query: 798 MKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 829
++ E G + VNG+LV + L++GD+V++R
Sbjct: 416 YRIHTEIGHHCVGATVNGRLVSLDYVLQNGDVVKIR 451
>gi|20807650|ref|NP_622821.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|20516195|gb|AAM24425.1| Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Thermoanaerobacter tengcongensis MB4]
Length = 718
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 113/190 (59%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + KA FA +AH GQ R +G+PY+ H + ILA L + + T+ AG+LHD
Sbjct: 18 NLDLLYKAYNFAVKAHEGQVRNSGEPYIVHPVEVAYILADL-----ELDLTTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + EEFG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTGVTYDQLMEEFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WRYKE 342
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 445
>gi|297742998|emb|CBI35865.3| unnamed protein product [Vitis vinifera]
Length = 535
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF+++ V KA A+RAH GQ R +GDPYL HC+ T +LA + +S VV+G
Sbjct: 25 HKIFSEDFVVKAFYEAERAHRGQMRASGDPYLQHCVETAVLLAKIGANST-----VVVSG 79
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I FG VA LV GVS+LS +++L R + N T+ EA+
Sbjct: 80 LLHDTLDDSFMGYDDIFGTFGAGVADLVEGVSKLSQLSKLARDN---NTASKTV---EAD 133
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VLIKLADRLHNM T+ ALP K + A+ETL I+ LA+RLG+
Sbjct: 134 RLHTMFLAMAD-ARAVLIKLADRLHNMMTLDALPLGKQQRFAKETLEIFVPLANRLGIST 192
Query: 276 LKAELEDLCFAVLQ 289
K +LE+LCF L
Sbjct: 193 WKEQLENLCFKHLN 206
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI+ KM +K++ + +++D LR++V ++ CY L +VHRL
Sbjct: 247 LSGRHKSLYSIYCKMLKKNMTMDEIHDIHGLRLIVENEED---------CYKALGVVHRL 297
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G F DYI + K +GY+SLHT V+G LEVQIRT++MH AE+G AAHW YKE
Sbjct: 298 WSEVPGRFKDYIKHSKFNGYRSLHTVVRGEGMVPLEVQIRTREMHLQAEYGFAAHWRYKE 357
>gi|254479350|ref|ZP_05092687.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
gi|214034716|gb|EEB75453.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
Length = 720
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA +AH GQ R +G+PY+ H + ILA L + + T+ AG+LHDV++D
Sbjct: 26 KAYNFAVKAHEGQVRNSGEPYIVHPVEVAYILADL-----ELDLTTIAAGLLHDVIEDTG 80
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+ + EEFG E+A LV GV++L I + V Q +A ++R ML+ M
Sbjct: 81 VTYDQLMEEFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRKMLIAMA 128
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A RLG+ +K ELEDLC
Sbjct: 129 KDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCL 188
Query: 286 AVLQ 289
L
Sbjct: 189 RYLH 192
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 229 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WRYKE 344
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 347 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 397
Query: 785 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 398 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 447
>gi|269836765|ref|YP_003318993.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
gi|269786028|gb|ACZ38171.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
Length = 748
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 116/188 (61%), Gaps = 16/188 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA +AH G+ R++GDPY++H + ILA + + +T+ A +LHDV++D
Sbjct: 50 VRKAYEFADQAHAGKLRRSGDPYISHPLAVAIILAEM-----QLDQETLCAALLHDVIED 104
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE---EANDLRVM 220
S+ + FG+ +A+LV GV++L I R + ++ E +A LR M
Sbjct: 105 TDTSVEELTTIFGERIARLVDGVTKLGRI--------RWATEEDSVTREKERQAESLRKM 156
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L MVDD RVVLIKLADRLHNMRT+ +P AK AQET+ I+ LA+RLG+W LK+EL
Sbjct: 157 FLAMVDDVRVVLIKLADRLHNMRTLEHMPRAKQLRSAQETMEIYAPLANRLGIWQLKSEL 216
Query: 281 EDLCFAVL 288
EDL L
Sbjct: 217 EDLALRYL 224
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S+R K + SI KM RK ++YD +RV+V +K CY L
Sbjct: 262 GIRAEISAREKHITSIARKMERKGRSFDEIYDVLGVRVIVDEKKD---------CYGALG 312
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H +W PI GEFDDYI PK S YQS+HTAV GPDG LE+QIRT +MH AE+G+AAH
Sbjct: 313 VIHTMWHPIPGEFDDYIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAH 372
Query: 529 WLYKE 533
W YKE
Sbjct: 373 WRYKE 377
>gi|39997334|ref|NP_953285.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens PCA]
gi|409912678|ref|YP_006891143.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens KN400]
gi|39984225|gb|AAR35612.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens PCA]
gi|298506271|gb|ADI84994.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter sulfurreducens KN400]
Length = 716
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 133/234 (56%), Gaps = 22/234 (9%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
I+D V VT P+ + + ++KA + + H GQ R +G+PYL H + +LA L K
Sbjct: 7 ILDKV-VTYNPVADLDLIRKAYVYCAKVHQGQTRLSGEPYLVHPMEVAGVLADL-----K 60
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
V TVV G+LHD ++D + +E FG EVA LV GV+++ ++
Sbjct: 61 LDVPTVVTGLLHDTIEDTLTTREELEGMFGAEVANLVDGVTKIG------------KIHF 108
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
T +A + R MLL M +D RV+L+KLADRLHNMRT+ P K R++++ETL I+
Sbjct: 109 KTKEESQAENFRKMLLAMANDIRVILVKLADRLHNMRTLQYQPEPKQRSISRETLDIYAP 168
Query: 267 LASRLGLWALKAELEDLCFAVL--QMRADLASMWSPRN--RVGYSRRITTIVSS 316
LA+RLG+ +K+ELEDL F L Q+ DLAS + + R Y + I+ S
Sbjct: 169 LANRLGISWIKSELEDLSFRYLEPQIYYDLASKVAKKKKERESYVEEVRQIIVS 222
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM+ ++V I ++YD A+RV+V D I+ CY +L I+H W P
Sbjct: 236 RSKHLYSIWRKMQARNVDIDQIYDLVAIRVMVND---------IRECYEVLGIIHSTWKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
I G F DYI PK + YQSLHT V GP G +EVQIRT MH AE G+AAHW YKE
Sbjct: 287 IPGRFKDYIAMPKGNMYQSLHTTVIGPHGERMEVQIRTSDMHRVAEAGIAAHWKYKE 343
>gi|86606590|ref|YP_475353.1| RelA/SpoT family protein [Synechococcus sp. JA-3-3Ab]
gi|86555132|gb|ABD00090.1| RelA/SpoT family protein [Synechococcus sp. JA-3-3Ab]
Length = 760
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 112/189 (59%), Gaps = 17/189 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FA H GQ RK+GDPY+ H + +L L G AV TV AG+LHDVV+D
Sbjct: 52 LRRAFEFAYCLHKGQKRKSGDPYIAHPVAVASLLREL----GGDAV-TVAAGLLHDVVED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L ++E EFG EV LV GV++LS N + ++A + R M +
Sbjct: 107 TEVTLEALEAEFGPEVRLLVEGVTKLS------------QFNFSSKTEQQAENFRRMFVA 154
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ LPP K + +A ET+ I+ LA+RLG+W K ELEDL
Sbjct: 155 MAKDIRVIVVKLADRLHNMRTLQYLPPHKQKQIAAETMEIFAPLANRLGIWHFKWELEDL 214
Query: 284 CFAVLQMRA 292
F L A
Sbjct: 215 AFKYLDYEA 223
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 409 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
G+E +S R K LY I+ KM+++ H++YD A+RV+V + CY +L
Sbjct: 257 GLEHFEISGRPKHLYGIYRKMQQQRKEFHEIYDLLAVRVIVQ---------TVSECYRVL 307
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
+VH + PI G F DYI PK + YQSLHTAV G G +EVQIRT++MH AE+G+AA
Sbjct: 308 AVVHNCFRPIPGRFKDYIGLPKANRYQSLHTAVIGLQGRPVEVQIRTEEMHRVAEYGIAA 367
Query: 528 HWLYKETGN 536
HW YKE G+
Sbjct: 368 HWKYKEAGS 376
>gi|407801695|ref|ZP_11148538.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
gi|407024012|gb|EKE35756.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
Length = 705
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 18/195 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV +A FA+RAH GQ+R+TGDPY+TH + IL + +++A +LHDV++
Sbjct: 22 QVVRAYEFAERAHEGQYRRTGDPYITHPLAVANILTDMHMDH-----QSLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + + E F +VA+LV GVS+++ I + ++A +LR M+L
Sbjct: 77 DTGVTKEQLAELFSPDVAELVDGVSKIAQIKF------------ESKAEQQAENLRKMML 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADRLHNMRT++++P K + +A ETL I+ +A+RLG++ ++ E ED
Sbjct: 125 AMTRDIRVILVKLADRLHNMRTLHSMPSEKRKRIATETLEIYAPIANRLGMYNMRVEYED 184
Query: 283 LCF-AVLQMRADLAS 296
L F A+ MRA+L S
Sbjct: 185 LGFNAIYPMRANLIS 199
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LYSI+ KM+ + ++++ D R++V DK + CY +L
Sbjct: 228 GIPARILGREKHLYSIYMKMKEQHKPLNEIMDVYGFRIIV-DK--------VDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + PI G F DYI PK +GYQSLHT ++ G LE+QIRT++M A +G+AAH
Sbjct: 279 AVHNYFTPIPGRFKDYIAIPKANGYQSLHTTLKARSGIPLEIQIRTEEMEAMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|375142501|ref|YP_005003150.1| RelA/SpoT family (p)ppGpp synthetase [Mycobacterium rhodesiae NBB3]
gi|359823122|gb|AEV75935.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium rhodesiae
NBB3]
Length = 788
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 113/194 (58%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A+ H GQ R++GDPY+TH + ILA L + T++A
Sbjct: 73 YPKANLTLLQRAYEVAEERHAGQLRRSGDPYITHPLAVANILAEL-----EMDTTTLIAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ EEFG EV LV GV++L V GT E
Sbjct: 128 LLHDTVEDTGYTLEALTEEFGTEVGHLVDGVTKLD------------KVALGTAA--EGE 173
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M+L M DPRV++IK+ADRLHNMRT+ LPP K A ++ETL + LA RLG+
Sbjct: 174 TIRKMILAMARDPRVLVIKVADRLHNMRTMRFLPPEKQAAKSRETLEVIAPLAHRLGMAT 233
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 234 VKWELEDLSFAILH 247
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ D ++ CY+ + +
Sbjct: 285 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDD---------VRDCYAAVGV 335
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 336 VHSLWQPIAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTVDMHKTAEYGIAAHW 395
Query: 530 LYKETGNK 537
YKE +
Sbjct: 396 RYKEAKGR 403
>gi|170695919|ref|ZP_02887059.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
gi|170139217|gb|EDT07405.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
Length = 747
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPAVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K ++SI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIFSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHWRYKEAGTR 357
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 225
I + FG+EVA+LV+ V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVSDVRKLLRLGTVSLRAAQNTMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
>gi|188585914|ref|YP_001917459.1| (p)ppGpp synthetase I SpoT/RelA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350601|gb|ACB84871.1| (p)ppGpp synthetase I, SpoT/RelA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 729
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 18/195 (9%)
Query: 96 YPIFND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
YP+ D EQ+ +A FA+ H+ Q R +G+ Y+ H I +LA L + +DT+ A
Sbjct: 19 YPLDTDLEQLDRAFEFARSYHNDQKRVSGEEYIVHPIEVALVLADL-----ELDLDTISA 73
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
G+LHDV++D + +EE FGDE+ LV GV++LS +N T +A
Sbjct: 74 GLLHDVMEDTPATREELEELFGDEITLLVDGVTKLS------------RLNFKTKEEHQA 121
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+LR M M +D RV+LIKLADR HNMRT+ LP K + +A+ET+ I+ LA+RLG++
Sbjct: 122 ENLRKMFFAMANDIRVILIKLADRTHNMRTLNYLPERKQKEIAKETMEIYAPLANRLGIY 181
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL F ++
Sbjct: 182 KIKWELEDLAFRYIE 196
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYSI+SKM++ ++++YD ALR++V + ++ CY++L
Sbjct: 233 GIDGEIHGRPKHLYSIYSKMKKTGKDLNEIYDLIALRIIVNN---------VKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH +W P+ G F DYI PK + YQSLHT V P G+ +E+QIRT MH+ AE+G+AAH
Sbjct: 284 TVHTMWKPVPGRFKDYIAVPKSNMYQSLHTTVLCPQGNLVEIQIRTWDMHKTAEYGIAAH 343
Query: 529 WLYKETGN 536
W YKE +
Sbjct: 344 WKYKENTD 351
>gi|167587364|ref|ZP_02379752.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia ubonensis Bu]
Length = 746
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 240 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 290
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 291 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHSFAEYGVAAHW 350
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 351 RYKEAGTR 358
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ GK VD V A L +
Sbjct: 21 LAFV-REHAGDARLSSGELLADHAAGTASIM-------GKLNVDPPAVQAAALFALTPHL 72
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
+ + FGDEVA+LV+ V +L + + LR + G E LR
Sbjct: 73 NDPERELAARFGDEVARLVSDVRKLLRLGTVSLRVAQNAAPEAGRDAAAERRAQIEALRK 132
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A A VA+ETL I+ LA+RLG+W LK E
Sbjct: 133 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKVAPPPDVARETLEIYAPLANRLGIWQLKWE 192
Query: 280 LEDLCF 285
LEDL F
Sbjct: 193 LEDLAF 198
>gi|94499848|ref|ZP_01306384.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Bermanella marisrubri]
gi|94428049|gb|EAT13023.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Oceanobacter sp. RED65]
Length = 710
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 123/193 (63%), Gaps = 18/193 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV +A +A++AH GQFR++GDPY+ H + IL+ + S +++A +LHDV++
Sbjct: 22 QVCRAYYYAEQAHEGQFRRSGDPYIVHPLAVANILSEMHMDS-----QSLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D +++++FG+ V++LV GVS+L++I + + +A + + M +
Sbjct: 77 DTAVPKDALKDQFGETVSELVDGVSKLTHIKFESQEEK------------QAGNFQKMAM 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADRLHNMRT+ A+PP K R +A ETL I+ +A+RLG+ ++ ELED
Sbjct: 125 AMAKDIRVILVKLADRLHNMRTLSAMPPEKKRRIAGETLEIYAPIANRLGISNIRIELED 184
Query: 283 LCF-AVLQMRADL 294
LCF A MR+++
Sbjct: 185 LCFNAKHPMRSNM 197
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYSI+ KM+ + ++ D R++V + + CY L
Sbjct: 228 GLKTRVMGREKHLYSIYRKMKEQKKSFKQIMDVYGFRIIVDN---------VDSCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH + P+ G F DYI PK +GYQSLHT V G G +E+QIRT++M A +G+AAH
Sbjct: 279 IVHNFYKPVPGRFKDYIAIPKSNGYQSLHTTVVGVGGVHIEIQIRTEEMEAMAHNGIAAH 338
Query: 529 WLYKE 533
WLYK+
Sbjct: 339 WLYKD 343
>gi|444921552|ref|ZP_21241387.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507279|gb|ELV07456.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 695
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 18/166 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R+K +YSI+ KM K ++ D RA+RV+V + + CY +L
Sbjct: 212 GIEGEVSGRVKHIYSIWKKMTTKGKSFEELLDVRAVRVIVKN---------LSDCYRVLG 262
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH W P+ EFDDYI NPKP+GYQSLHTAV GP A+EVQIRT+KMHE+AE G+AAH
Sbjct: 263 MVHEKWPPLPREFDDYIANPKPNGYQSLHTAVLGPQNKAIEVQIRTRKMHEHAELGVAAH 322
Query: 529 WLYKETGNKLQSISSMDES----DIEASSSLSKDTDDHNPLDTDLF 570
W YKE+ L + ++ D EA+S SK+ LD DLF
Sbjct: 323 WHYKESDASLSQQAKLNRVRQLLDQEANSESSKEL-----LDKDLF 363
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR MLL +V+D + ++I LA+++ MR + P VA++T ++ LA+RLGL
Sbjct: 103 LRKMLLAIVEDVQTLVIILANQVVRMRHLKHEPDEIKILVAEQTRDVFAPLANRLGLSRF 162
Query: 277 KAELEDLCFAVLQ 289
K ELED L+
Sbjct: 163 KWELEDEVLHYLK 175
>gi|339483990|ref|YP_004695776.1| (p)ppGpp synthetase I SpoT/RelA [Nitrosomonas sp. Is79A3]
gi|338806135|gb|AEJ02377.1| (p)ppGpp synthetase I, SpoT/RelA [Nitrosomonas sp. Is79A3]
Length = 701
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 17/183 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++ A +F + AH GQFRK+G+PY++H + RIL+ L T+ A +LHDVV+
Sbjct: 22 QLRNAYSFGQGAHSGQFRKSGEPYISHPVAVARILSTL-----HLDAPTLTAALLHDVVE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S I E FG+ VA+LV GVS+L+ + T +A + R MLL
Sbjct: 77 DTDISKAEISERFGEPVAELVDGVSKLT------------KIEFQTQEEAQAENFRKMLL 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNMRT+ A+ PAK R++A+ETL I+ +A RLGL + EL++
Sbjct: 125 AMARDVRVILIKLADRLHNMRTLEAMLPAKQRSIARETLEIYAPIAHRLGLNNIYQELQE 184
Query: 283 LCF 285
L F
Sbjct: 185 LGF 187
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K LYSI+ KM K + +V D RV+V D I CY L
Sbjct: 228 GLNAEVTGREKHLYSIYMKMVEKHLSFSEVLDIYGFRVIVKD---------IPSCYVALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H L+ PI G+F DYI PK +GYQSLH + GP G +E+QIRT +MH AE+G+A+H
Sbjct: 279 MLHSLYKPIPGKFKDYIAIPKTNGYQSLHNTLLGPFGIPIEIQIRTAEMHRIAENGVASH 338
Query: 529 WLYKET 534
WLYK +
Sbjct: 339 WLYKSS 344
>gi|365873417|ref|ZP_09412950.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
gi|363983504|gb|EHM09711.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
Length = 760
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +LS R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 268 GIEASLSGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVVVG---------TVAECYQVLG 318
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 319 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGIAAH 378
Query: 529 WLYKETGNKLQSI 541
W YKE ++ I
Sbjct: 379 WHYKEGKRRVDQI 391
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA AH Q R +G+PY+ H I ILA + + VDT+ A +LHDV++D
Sbjct: 65 EALVFAANAHRDQRRHSGEPYVVHSISVAAILADM-----ELDVDTLCAALLHDVLEDTE 119
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ FG++V +V GV++L + ++ +A +LR M L M
Sbjct: 120 IGKEEMQSRFGEDVVTMVDGVTKLG------------KLAFKSMEDYQAENLRKMFLVMA 167
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLIKLADRLHNMRT+ A K +A+ETL I+ LA RLG++ +K ELEDLCF
Sbjct: 168 KDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETLEIYAPLAHRLGIYNVKRELEDLCF 227
Query: 286 AVLQ 289
+L+
Sbjct: 228 KILE 231
>gi|326794413|ref|YP_004312233.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas mediterranea MMB-1]
gi|326545177|gb|ADZ90397.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas mediterranea MMB-1]
Length = 749
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 96/152 (63%), Gaps = 11/152 (7%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
ELL S +E L R K +YSI+ KM+RK++G +VYD RA+R++V +
Sbjct: 246 ELLDSRLKGIKIEADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVEED------- 298
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
CY +L +VH LW PI EFDDYI NPKP+GYQSLHTAV GP G ALE+QIRT MH
Sbjct: 299 --MQCYGVLGVVHNLWKPIPQEFDDYISNPKPNGYQSLHTAVVGPQGRALEIQIRTNTMH 356
Query: 519 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 550
E AE G+ AHW YK G L S S+ E ++
Sbjct: 357 EDAELGVCAHWKYK--GTDLSSNSTSYEEKLQ 386
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ +G RA D++VA L+ V + + + + FG +VA L+ GV R+ +++
Sbjct: 68 LEMVEILAGFRADQDSLVAAALYRTVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKN 127
Query: 196 LRRHRRINVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253
L + LG E LR ML+ ++DD RVVLIKLA+R ++ A+
Sbjct: 128 LS----ADATAEVLGSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKHQDGARK 183
Query: 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
AVA E ++ LA RLG+ +K ELEDL F L
Sbjct: 184 EAVALEVQSVYAPLAHRLGIGHIKWELEDLSFRYL 218
>gi|120555153|ref|YP_959504.1| (p)ppGpp synthetase I SpoT/RelA [Marinobacter aquaeolei VT8]
gi|387813411|ref|YP_005428893.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120325002|gb|ABM19317.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter aquaeolei VT8]
gi|381338423|emb|CCG94470.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 745
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 109/181 (60%), Gaps = 19/181 (10%)
Query: 361 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 419
++LH S +K AK++ + + S + + L+ EL S G++ LS R K
Sbjct: 216 RYLH----GSAYKKIAKLLDEKRLDRESYIRRVIDTLQTELKAS-----GIKAELSGRAK 266
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
+YSI+ KMRRK + +VYD RA+R++V P ++ CY L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYGALGIVHTLWRHIPN 317
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 539
EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T + +
Sbjct: 318 EFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHAMHEEAELGVCAHWLYKGTDTRNK 377
Query: 540 S 540
S
Sbjct: 378 S 378
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++VA +L+ V + L + +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAVLYRAVREERVPLEEVRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
RLG+ +K ELEDL F L A +A + + +R Y RR+ + +
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKKIAKLLDEKRLDRESYIRRVIDTLQT 250
>gi|88703547|ref|ZP_01101263.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
gi|88702261|gb|EAQ99364.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
Length = 744
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 257 GIEFEISGRSKHIYSIWRKMQRKGIGFSQVYDIRAIRILV---------PELKDCYATLG 307
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTREMHEEAELGVCAH 367
Query: 529 WLYKETGNKLQSISSMDE 546
W YK T + S SS DE
Sbjct: 368 WRYKGTDTQPGSGSSYDE 385
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 13/160 (8%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I + +ILA L + VD ++AG+L+ V + SL +E+ FG +V+ + GV R++
Sbjct: 71 IESAQILAEL-----RVGVDCLIAGLLYRAVREQRLSLDDVEKRFGKKVSNQLRGVLRMA 125
Query: 191 YINQLLRRHRRINVNQGTLGHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL 248
I L R + LG E +++R ML+ +VDD +V LIKLA+R +R + +
Sbjct: 126 AIADL-----RNPSDTAVLGEAERQRDNIRKMLVAIVDDVQVALIKLAERTCAIRAVKS- 179
Query: 249 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
+ VA++ ++ LA RLG+ LK ELEDL F L
Sbjct: 180 DKTRQELVARDVFDVYAPLAHRLGIGHLKWELEDLSFRYL 219
>gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum seropedicae SmR1]
gi|300074077|gb|ADJ63476.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) protein
[Herbaspirillum seropedicae SmR1]
Length = 749
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L IVH +
Sbjct: 254 VSGRPKHIYSIWNKMRGKHIDFSELYDVRAFRVIVDD---------VKTCYAVLGIVHDI 304
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 305 WTPIPEEFDDYISRPKQNGYQSLHTVVTAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 364
Query: 534 TGNKLQSISSMDE 546
+G S DE
Sbjct: 365 SGGSNFSAQKYDE 377
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
+G L I +L L + ++ + A A +LH +++ +EE FG E+A
Sbjct: 45 SGQNALQFSISVATVLTALNVDAATRIAALAFEAQMLHPELEE------KLEERFGKEIA 98
Query: 181 KLVAGVSRLSYINQL-LRRHRRI--NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLAD 237
LV V +L + + + + N + LR MLL M D R VL++LA
Sbjct: 99 DLVGNVRQLMRFHSFSFQPQQEVLRGKNAAQQAAAQIETLRKMLLAMATDMRAVLVRLAS 158
Query: 238 RLHNMRTIYALPPAKARA---VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
R+ +R +A + A A++T ++ LA+RLG+W LK ELEDL F L+
Sbjct: 159 RVATLR-YFAETKQEDEASANYARQTFELYAPLANRLGIWQLKWELEDLSFRFLE 212
>gi|399020946|ref|ZP_10723070.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
gi|398093912|gb|EJL84286.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
Length = 752
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI++KMR K + ++YD RA RV+V D I+ CY++L I
Sbjct: 250 IKAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------IKTCYTVLGI 300
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H +W+PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAHW
Sbjct: 301 IHNIWVPIPKEFDDYISRPKQNGYQSLHTVVIAEDGRPLEVQIRTHEMHHFAEYGVAAHW 360
Query: 530 LYKETGNKLQSISSMDE 546
YKE+G S DE
Sbjct: 361 RYKESGGSNFSAQKYDE 377
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G + +V A+AF + + G+ +G L +L L + +T
Sbjct: 16 VAGLSPEDSARVLSALAFVEPLYAGKPIPSGQDALQFVQGVVSVLTALNVDA-----ETR 70
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV---NQGTL 209
+AG+L ++ ++ +IEE FG ++A LVAGV +L + L +H + + N
Sbjct: 71 IAGLLFELHVLDLDAAATIEERFGKDIADLVAGVRQLMRFHGLTFQHPQEVLRGKNAAQQ 130
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLIWCSL 267
+ LR MLL M D RVVL++LA R+ +R L A+ET ++ L
Sbjct: 131 AAAQVETLRKMLLAMATDMRVVLVRLASRVTTLRYFAENKLENETTAQYARETFDLYAPL 190
Query: 268 ASRLGLWALKAELEDLCFAVLQ 289
A+RLG+W LK ELEDL F ++
Sbjct: 191 ANRLGIWQLKWELEDLSFRFIE 212
>gi|326382134|ref|ZP_08203826.1| RelA/SpoT family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326198864|gb|EGD56046.1| RelA/SpoT family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 729
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A + A+ H GQFRK+GDPY+TH + ILA L + T+VA
Sbjct: 16 YPKADVAVLQQAYSVAEEHHSGQFRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 70
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E +FG EVA LV GV++L + LG EA
Sbjct: 71 LLHDTVEDTGYSLDQLEADFGTEVAHLVDGVTKLDKV---------------ALGSAAEA 115
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 116 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 175
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 176 TVKWELEDLAFAILH 190
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 231 TVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGMRILCDE---------VRDCYAAIGVVHS 281
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P YQSLHT V GP+G LEVQIRT +MH AE G+AAHW YK
Sbjct: 282 LWQPMAGRFKDYIAQPSFGVYQSLHTTVIGPEGKPLEVQIRTFEMHRTAEFGIAAHWRYK 341
Query: 533 E----TGNKLQSISSMDE 546
E G K ++ +D+
Sbjct: 342 EGRKGKGRKATDVAEVDD 359
>gi|415946935|ref|ZP_11556523.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
gi|407758147|gb|EKF68016.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
Length = 727
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 17/162 (10%)
Query: 393 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ LE+E ++++ + +S R K +YSI++KMR K + ++YD RA
Sbjct: 203 EKRLEREAFVASAIARLRSEMAAQDIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAF 262
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 263 RVIVDD---------VKTCYAVLGIVHDIWTPIPEEFDDYISRPKQNGYQSLHTVVLAED 313
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 546
G ALEVQIRT +MH +AE+G+AAHW YKE+G S DE
Sbjct: 314 GRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 355
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV----NQGTLGHEEANDLRVMLLGMVD 226
+EE FG E+A+LV V +L + L + + V N + LR MLL M
Sbjct: 66 LEERFGKEIAELVGNVRQLMRFHSLSFQPQNQEVLRGKNAAQQAAAQVETLRKMLLAMAT 125
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQ---ETLLIWCSLASRLGLWALKAELEDL 283
D R VL++LA R+ +R +A + A AQ +T ++ LA+RLG+W LK ELEDL
Sbjct: 126 DMRAVLVRLASRVATLR-YFAETKQENEASAQYARQTFDLYAPLANRLGIWQLKWELEDL 184
Query: 284 CFAVLQ 289
F L+
Sbjct: 185 SFRFLE 190
>gi|340357216|ref|ZP_08679839.1| GTP diphosphokinase [Sporosarcina newyorkensis 2681]
gi|339618078|gb|EGQ22679.1| GTP diphosphokinase [Sporosarcina newyorkensis 2681]
Length = 732
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 117/204 (57%), Gaps = 27/204 (13%)
Query: 92 DVTGYPIF-------NDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI 141
D+T IF N+E V +KA AK AH GQFR +G+PY+ H I ILA L
Sbjct: 6 DMTEQDIFELVAKYMNEEHVDFIKKAFVVAKAAHEGQFRSSGEPYINHPIQVAGILAEL- 64
Query: 142 PSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR 201
+ +TV AG LHDVV+D S I EFGDEVA LV GV++L + +
Sbjct: 65 ----QMDPETVAAGFLHDVVEDTEVSREDIIREFGDEVAMLVDGVTKLDKL--------K 112
Query: 202 INVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETL 261
N+ ++A + R M + M D RV+LIKLADRLHNMRT+ +P AK R V++ETL
Sbjct: 113 FKSNE----EKQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHVPAAKQRRVSEETL 168
Query: 262 LIWCSLASRLGLWALKAELEDLCF 285
I+ LA RLG+ +K ELED+
Sbjct: 169 EIFSPLAHRLGISTIKWELEDIAL 192
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 9/137 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LYSI+ KM + +++YD A+R+VV +I+ CY+ L
Sbjct: 233 GIASEMHGRPKHLYSIYQKMVIQKKEFNEIYDLLAVRIVV---------KSIKDCYAALG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MH +E G+AAH
Sbjct: 284 IIHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPAGDPLEVQIRTEEMHRISEFGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE + +S + +D
Sbjct: 344 WAYKEGKSVAKSSNDID 360
>gi|218132940|ref|ZP_03461744.1| hypothetical protein BACPEC_00801 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991813|gb|EEC57817.1| RelA/SpoT family protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 776
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 116/193 (60%), Gaps = 16/193 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q++KA A +AH GQFRK+G+PY+ H I ILA L + ++++AG
Sbjct: 57 HPSTDMSQIEKAYKIATKAHEGQFRKSGEPYIIHPICVAIILAEL-----ELDKESIIAG 111
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D + I EFG EVA LV GV++L+ QL H +I + +A
Sbjct: 112 LLHDVVEDTVMTTDDITREFGAEVALLVDGVTKLT---QLNYEHDKIEI--------QAE 160
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV++IKLADRLHNMRT+ PAK ++ET+ I+ +A RLG+
Sbjct: 161 NLRKMFLAMAKDIRVIMIKLADRLHNMRTMQYQSPAKQIEKSRETMEIYAPIAHRLGISK 220
Query: 276 LKAELEDLCFAVL 288
+K EL+DL L
Sbjct: 221 IKVELDDLSMQYL 233
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 14/134 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R+K +SI+ KM ++ + ++YD A+R+ V ++ CY+ L
Sbjct: 271 GIEAEIDGRVKHFFSIYRKMVNQNKTLDQIYDLFAVRIKV---------ETVKDCYAALG 321
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PK + YQSLHT + +G E+QIRT +MH AE+G+AAH
Sbjct: 322 VIHEMYKPIPGRFKDYIAMPKENMYQSLHTTLIASNGRPFEIQIRTYEMHRTAEYGIAAH 381
Query: 529 WLYK-----ETGNK 537
W YK ETGN+
Sbjct: 382 WKYKEGKTGETGNQ 395
>gi|238922253|ref|YP_002935767.1| GTP pyrophosphokinase [Eubacterium eligens ATCC 27750]
gi|238873925|gb|ACR73633.1| GTP pyrophosphokinase [Eubacterium eligens ATCC 27750]
Length = 770
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 119/193 (61%), Gaps = 16/193 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A++AH GQFRK+G+PY+ H + ILA L + ++++AG
Sbjct: 50 HPSTDLSDIEKAYETARKAHEGQFRKSGEPYIIHPLCVAIILAEL-----ELDKESIIAG 104
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D + + +EFGDEVA LV GV++L+ QL +H +I V +A
Sbjct: 105 LLHDVVEDTVMTSEDVAKEFGDEVALLVDGVTKLT---QLNYQHDKIEV--------QAE 153
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ PAK ++ET+ I+ +A RLG+
Sbjct: 154 NLRKMFLAMAKDIRVILIKLADRLHNMRTMQYQSPAKQIEKSRETMEIYAPIAHRLGISK 213
Query: 276 LKAELEDLCFAVL 288
+K EL+DL L
Sbjct: 214 IKVELDDLSMKYL 226
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 11/131 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R+K +SI+ KM ++ + ++YD A+R+ V ++ CY+ L
Sbjct: 264 GIEAEIDGRVKHFFSIYRKMVNQNKTLDQIYDIFAVRIKVD---------TVKDCYAALG 314
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + +G E+QIRT +MH+ AE+G+AAH
Sbjct: 315 VIHEMYKPIPGRFKDYIAMPKPNNYQSLHTTLIASNGQPFEIQIRTYEMHKIAEYGIAAH 374
Query: 529 WLYKE--TGNK 537
W YKE TG K
Sbjct: 375 WKYKEGKTGEK 385
>gi|421745285|ref|ZP_16183143.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
gi|409776307|gb|EKN57726.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
Length = 742
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E L++EL + G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D
Sbjct: 232 ERLQRELAAA-----GIRAEVSGRPKHIYSIWKKMRGKDLDFADLYDVRAFRVIVDD--- 283
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIR
Sbjct: 284 ------IKDCYAVLGIVHHVWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIR 337
Query: 514 TQKMHEYAEHGLAAHWLYKETGNK 537
T +MH +AE+G+AAHW YKE G K
Sbjct: 338 THEMHHFAEYGVAAHWRYKEAGGK 361
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHDVVD 162
V++A+A+A+ TG+ L+H RIL G R D A L V
Sbjct: 20 VEQALAYAREHGEAVALPTGESVLSHAEGMLRIL------DGLRIDDAARAAACLFPVAA 73
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINV----NQGTLGHEEANDL 217
E+ I E FGDEVA+LV V +L I + + R + N+ HE+ L
Sbjct: 74 FVPETEAEIPERFGDEVARLVKDVRQLLRIGAIAVNRGDTVEAPSSRNEAQARHEQVEAL 133
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVVL++LA RL +R + A VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKNAPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 278 AELEDLCFAVLQ 289
ELEDL F Q
Sbjct: 194 WELEDLAFRFEQ 205
>gi|167824448|ref|ZP_02455919.1| GTP pyrophosphokinase [Burkholderia pseudomallei 9]
gi|226199671|ref|ZP_03795224.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
gi|225928257|gb|EEH24291.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
Length = 745
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLH V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHAVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 18 LAFV-REHAGDARLSSGERLADHAAGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 71
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I FGDEVA LVA V +L + + LR + V+ G E LR
Sbjct: 72 --PDKQIAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRK 129
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 130 MLLAFAQDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 189
Query: 280 LEDLCF 285
LEDL F
Sbjct: 190 LEDLAF 195
>gi|384440422|ref|YP_005655146.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
gi|359291555|gb|AEV17072.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
Length = 726
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 18/193 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+ A FA+ AH GQ RK+G+PY+TH + ILA L + +TV AG+LHD V
Sbjct: 24 EGVKAAYLFAEEAHRGQLRKSGEPYITHPVAVAEILASL-----RMDAETVAAGLLHDTV 78
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D + +E FG V ++V G +++S + +L L EE A DLR
Sbjct: 79 EDCGVAPEELERRFGPGVRRIVEGETKVSKLYKL-----------ANLEGEEKRAEDLRQ 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M + M +D R++++KLADRLHN+RT+ +PP K R +AQETL I+ LA RLG+ LK E
Sbjct: 128 MFIAMAEDVRIIIVKLADRLHNLRTLEHMPPHKQRRIAQETLEIYAPLAHRLGIGQLKWE 187
Query: 280 LEDLCFAVLQMRA 292
LEDL F L A
Sbjct: 188 LEDLSFRYLHPEA 200
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 14/178 (7%)
Query: 388 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 447
++ EEAL K+ L+ + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMAILEEALRKDELLQAQ-LQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 448 VGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 503
+ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPAPTEEGQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 504 DGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 554
+G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 339 EGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSS 396
Score = 39.3 bits (90), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 704 FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE- 750
EG P++ + R VA + A + ++ LR++ W+++ S
Sbjct: 338 LEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSSR 397
Query: 751 ---ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKL 806
++ + LGG+ V V P G I+ L G+T D A + E G
Sbjct: 398 EFVEAVTRDLLGGR-------------VFVFTPKGRIINLPKGATPVDFAYHIHTEVGHH 444
Query: 807 VL---VNGQLVLPNTELKDGDIVEV 828
++ VNG++V + EL++G+IVE+
Sbjct: 445 MVGAKVNGRIVPLSYELQNGEIVEI 469
>gi|350545530|ref|ZP_08915006.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526692|emb|CCD39813.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
Length = 740
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KMR K + ++ D RA RV+VGD I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD---------IKDCYTVLGIVHNL 293
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 534 TGNK 537
G +
Sbjct: 354 AGTR 357
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A+AF + TG+ + H T RI+ L S A + A H +DD
Sbjct: 16 IDDALAFVREHAKDARLSTGELLVDHAAGTARIMQTLNVDSHAIAAAALFAPAPH--LDD 73
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG-----HEEANDLR 218
+ I E FG EV +LV V +L + + R + + T H + LR
Sbjct: 74 PEKV---ITERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARHAQVEALR 130
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
MLL D RVVLI+LA R+ +R A + V +ETL I+ LA+RLG+W LK
Sbjct: 131 KMLLAFAQDIRVVLIRLASRVQTLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLKW 190
Query: 279 ELEDLCF 285
ELEDL F
Sbjct: 191 ELEDLSF 197
>gi|291301292|ref|YP_003512570.1| (p)ppGpp synthetase I SpoT/RelA [Stackebrandtia nassauensis DSM
44728]
gi|290570512|gb|ADD43477.1| (p)ppGpp synthetase I, SpoT/RelA [Stackebrandtia nassauensis DSM
44728]
Length = 787
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 116/196 (59%), Gaps = 25/196 (12%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VV 153
+P + +Q+A A A+R H GQFRK+GDPY+TH + ILA L +DT +V
Sbjct: 67 HPRTDVRLLQRAYATAERLHEGQFRKSGDPYITHPLAVASILAEL-------GMDTTSLV 119
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE- 212
A +LHD V+D +L +I E+FG EVA LV GV++L + LG
Sbjct: 120 AALLHDTVEDTDYTLEAITEDFGGEVALLVDGVTKLDKVK---------------LGDAA 164
Query: 213 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 272
+A +R M++ M DPRV++IKLADRLHNMRT+ LP AK A ETL I LA RLG
Sbjct: 165 KAETIRKMVVAMAKDPRVLVIKLADRLHNMRTLTFLPAAKQEQKAHETLEILAPLAHRLG 224
Query: 273 LWALKAELEDLCFAVL 288
+ +K ELEDL FA L
Sbjct: 225 MNTIKWELEDLSFATL 240
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T+S R K LYSI+ KM + +YD +R++V + CY+ L +
Sbjct: 279 IKATVSGRPKHLYSIYQKMIVRGRDFSDIYDLVGIRILVNSERD---------CYAALGV 329
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F D+I PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 330 IHANWQPVPGRFKDFIAMPKFNMYQSLHTTVIGPTGKPVEMQIRTWAMHRTAEYGIAAHW 389
Query: 530 LYKET 534
YKET
Sbjct: 390 KYKET 394
>gi|225175541|ref|ZP_03729535.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiobacter alkaliphilus AHT 1]
gi|225168870|gb|EEG77670.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiobacter alkaliphilus AHT 1]
Length = 721
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 18/195 (9%)
Query: 96 YPIFND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
YP+ D ++ +A FA AH GQ R +G+ Y+TH + ILA L + +DT+VA
Sbjct: 14 YPVEPDWSRLNEAYKFAVEAHQGQKRFSGELYITHPLGVSHILAEL-----EMDMDTIVA 68
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
G+LHDVV+D +L IEE+FG+E+A LV GV++LS + + +A
Sbjct: 69 GLLHDVVEDTEVTLEDIEEKFGEEIAMLVDGVTKLS------------KLEYKSKEEHQA 116
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+LR M + M D RV+LIKLADR HNMRT+ L K +A+++ETL I+ LA RLG++
Sbjct: 117 ENLRKMFIAMAKDIRVLLIKLADRTHNMRTLKYLTSIKQQAISRETLEIYAPLAHRLGIY 176
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL F L+
Sbjct: 177 KIKWELEDLAFRFLE 191
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K LYSI KM+ + H++YD A+R++V +++ CY L
Sbjct: 228 GIQAHISGRPKHLYSISQKMKEQGKEFHEIYDLTAIRIIVD---------SLKDCYGALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V LEVQIRT +MH AE G+AAH
Sbjct: 279 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTLVMVGKNELLEVQIRTWEMHRTAEFGIAAH 338
Query: 529 WLYKE 533
W YKE
Sbjct: 339 WRYKE 343
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 729 SINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 788
SI+NK+ LR ++ ++ SK + N + + V V P G+++ L
Sbjct: 351 SIDNKLTWLRQIMELQQD---------SKDASEFMENVKLDLFADEVFVFTPKGDVIDLP 401
Query: 789 SGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 828
+GS D A K+ + G + VNG+LV + ELK GDIVEV
Sbjct: 402 AGSIPLDFAYKIHTDIGHRCIGARVNGRLVPLDYELKTGDIVEV 445
>gi|329897893|ref|ZP_08272243.1| GTP pyrophosphokinase [gamma proteobacterium IMCC3088]
gi|328921019|gb|EGG28438.1| GTP pyrophosphokinase [gamma proteobacterium IMCC3088]
Length = 702
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 120/190 (63%), Gaps = 21/190 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA--MLIPSSGKRAVDTVVAGILHD 159
+ V++A +A++AH GQ R++GDPY+TH + ILA + P S ++AG+LHD
Sbjct: 21 QNVKRAFFYAEQAHFGQTRRSGDPYVTHPLAVACILAEMHMDPQS-------IMAGLLHD 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S ++ E+FGD VA+LV GVS+L+ +I N +L ++A + +
Sbjct: 74 VIEDTGISKTALAEQFGDTVAELVDGVSKLT----------QIEFN--SLAEKQAENFQK 121
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M L M D RV+L+KLADRLHNMRT+ L PAK+R +A+ETL I+ +A RLG+ ++ E
Sbjct: 122 MALAMARDIRVILVKLADRLHNMRTLGVLNPAKSRRIAKETLEIYAPIAMRLGMNTVRME 181
Query: 280 LEDLCFAVLQ 289
EDL F L
Sbjct: 182 FEDLGFKALH 191
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G T++ R K LYSI+ KM+ K ++ D A R++V ++ CY +L
Sbjct: 228 GHSATVTGREKHLYSIYQKMKEKRKSFAEIMDIYAFRIIVD---------SVDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH ++ P+ GEF DYI PK +GYQSLHT ++G G +E+QIRT++M + A +G+AAH
Sbjct: 279 CVHSIYKPVPGEFTDYIAMPKANGYQSLHTVLRGMHGVPIEIQIRTREMEDMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|325294217|ref|YP_004280731.1| (p)ppGpp synthetase I SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064665|gb|ADY72672.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 716
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 115/190 (60%), Gaps = 17/190 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F++E + KA FAK H GQFRK+G+P+ +H ILA L + T+++G+LH
Sbjct: 18 FDEELIIKAYNFAKERHEGQFRKSGEPFFSHPAEVAYILAEL-----RMDTPTIISGLLH 72
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D ++ IE+EFG EVA +V GV++L Q + R +A R
Sbjct: 73 DVVEDTDTTIEEIEKEFGKEVAFIVKGVTKLEGY-QFSSKEER-----------DAESFR 120
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
+L+ + +D RV+++KLADRLHNMRT+ ++ P + A+ETL I+ LA+RLG++ +K
Sbjct: 121 NLLISLAEDIRVLIVKLADRLHNMRTMESMKPESQKRNAKETLTIYAPLANRLGMYRIKN 180
Query: 279 ELEDLCFAVL 288
ELEDL L
Sbjct: 181 ELEDLSLKYL 190
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 9/130 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R+K +Y I+ KM K + +VYD +RV+ + CY +L
Sbjct: 228 GLKGDIQWRVKHIYGIYRKMVTKGIPFEEVYDVAGIRVITD---------TVGACYQILG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H +WIP+ G DYI PKP+ YQSLHT V GP G +E QIRT +MH+ AE G+AAH
Sbjct: 279 IIHSIWIPVPGRIKDYIATPKPNMYQSLHTTVVGPKGQFIEFQIRTYEMHQVAEMGIAAH 338
Query: 529 WLYKETGNKL 538
W YKE G L
Sbjct: 339 WKYKEGGGAL 348
>gi|167620277|ref|ZP_02388908.1| GTP pyrophosphokinase [Burkholderia thailandensis Bt4]
gi|257139341|ref|ZP_05587603.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 747
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 349
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 108 IAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDA 164
+AF R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 20 LAFV-REHAGDARLPSGELLADHATGTSTIMQRLNVDPPATQAAALFALAPYLSD----- 73
Query: 165 CESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRV 219
I E FGDEVA LV V +L + + LR + + V+ G E LR
Sbjct: 74 --PEKQIAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRK 131
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK E
Sbjct: 132 MLLAFAQDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWE 191
Query: 280 LEDLCF 285
LEDL F
Sbjct: 192 LEDLAF 197
>gi|256004313|ref|ZP_05429295.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum DSM
2360]
gi|385778263|ref|YP_005687428.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium thermocellum DSM 1313]
gi|419722157|ref|ZP_14249305.1| RelA/SpoT family protein [Clostridium thermocellum AD2]
gi|419724255|ref|ZP_14251323.1| RelA/SpoT family protein [Clostridium thermocellum YS]
gi|255991747|gb|EEU01847.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum DSM
2360]
gi|316939943|gb|ADU73977.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum DSM
1313]
gi|380772261|gb|EIC06113.1| RelA/SpoT family protein [Clostridium thermocellum YS]
gi|380781728|gb|EIC11378.1| RelA/SpoT family protein [Clostridium thermocellum AD2]
Length = 724
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 114/206 (55%), Gaps = 21/206 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA + AH GQ R++GDP++ H + ILA L + +VAGILHD+V+D
Sbjct: 24 IEKAHNLSLEAHKGQQRESGDPFIVHPMEVANILADL-----ELDCTAIVAGILHDIVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I E FGDEVA LV GV++L I + +A +LR M L
Sbjct: 79 TSYTIEQIRENFGDEVANLVDGVTKLGKIPYTTKEEL------------QAENLRKMFLA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ +PP K A+ETL I+ LA RLG+ +K ELEDL
Sbjct: 127 MAKDIRVILIKLADRLHNMRTLKYMPPEKQIEKAKETLEIYAPLAHRLGISKIKWELEDL 186
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRR 309
C L D + N++ RR
Sbjct: 187 CLRYL----DPKGYYDLVNKIAKKRR 208
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +++ I ++YD A+RV+V ++ CY++L
Sbjct: 229 GIDAHIEGRPKHFYSIYRKMVQQNKTIEQIYDLFAVRVIV---------TTVKDCYAVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH ++ P+ G F DYI PKP+ YQSLHT + G +G EVQIRT +MH AE G+AAH
Sbjct: 280 LVHEIFKPMPGRFKDYIAMPKPNMYQSLHTTLIGHEGVPFEVQIRTWEMHRVAEVGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|125973859|ref|YP_001037769.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium thermocellum ATCC
27405]
gi|125714084|gb|ABN52576.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum ATCC
27405]
Length = 724
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 122/237 (51%), Gaps = 32/237 (13%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA + AH GQ R++GDP++ H + ILA L + +VAGILHD+V+D
Sbjct: 24 IEKAHNLSLEAHKGQQRESGDPFIVHPMEVANILADL-----ELDCTAIVAGILHDIVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I E FGDEVA LV GV++L I + +A +LR M L
Sbjct: 79 TSYTIEQIRENFGDEVANLVDGVTKLGKIPYTTKEEL------------QAENLRKMFLA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ +PP K A+ETL I+ LA RLG+ +K ELEDL
Sbjct: 127 MAKDIRVILIKLADRLHNMRTLKYMPPEKQIEKAKETLEIYAPLAHRLGISKIKWELEDL 186
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
C L D + N++ RR ER A E T E + +
Sbjct: 187 CLRYL----DPKGYYDLVNKIAKKRR-----------EREAYISEIIKTIQEKTVEI 228
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +++ I ++YD A+RV+V ++ CY++L
Sbjct: 229 GIDAHIEGRPKHFYSIYRKMVQQNKTIEQIYDLFAVRVIV---------TTVKDCYAVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH ++ P+ G F DYI PKP+ YQSLHT + G +G EVQIRT +MH AE G+AAH
Sbjct: 280 LVHEIFKPMPGRFKDYIAMPKPNMYQSLHTTLIGHEGVPFEVQIRTWEMHRVAEVGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|313679281|ref|YP_004057020.1| (p)ppGpp synthetase I SpoT/RelA [Oceanithermus profundus DSM 14977]
gi|313151996|gb|ADR35847.1| (p)ppGpp synthetase I, SpoT/RelA [Oceanithermus profundus DSM
14977]
Length = 734
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 121/188 (64%), Gaps = 16/188 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A+ FA RAH GQFR++G+PY+TH + ILA L + D+++AG+LHD V+
Sbjct: 29 RVREALDFAYRAHEGQFRRSGEPYITHPVAVTEILAEL-----QMDPDSLIAGLLHDTVE 83
Query: 163 DA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
D S +I + FG++VA++V G +++S ++++ ++ ++A +LR M
Sbjct: 84 DVESVSFETIRQRFGEDVARIVEGETKVSKLSKM----------ATSVEDQQAENLRQMF 133
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D R++++KLADR HNMRT+ +PP K R +++ETL I+ +A RLG+ +K ELE
Sbjct: 134 IAMTRDLRIIIVKLADRTHNMRTLEFMPPEKQRRISKETLEIFAPMAHRLGIGQIKLELE 193
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 194 DLAFRYLH 201
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 366 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIF 425
LA S+A ++ VV +A AL E ALE + ++ S + G V S R K L+SI+
Sbjct: 212 LAHHSQAHRE--VVDNAKGAL------EHALENDYVLGLS-VDGFSV--SGRTKHLFSIW 260
Query: 426 SKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSLLDIVHRLWIPIDGEF 481
KM+R++ + ++YD ALRV++ K A Q CY +L +VH LW PI G
Sbjct: 261 KKMQREEKTLEQIYDLLALRVILDPKPVASPEEAASREKQVCYHVLGLVHALWPPIPGRV 320
Query: 482 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
DYI PKP+GYQSLHT V P G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 321 KDYIAQPKPNGYQSLHTTVITPGGLPLEVQIRTREMHRVAEYGVAAHWLYKE 372
>gi|17546295|ref|NP_519697.1| GTP pyrophosphokinase [Ralstonia solanacearum GMI1000]
gi|17428592|emb|CAD15278.1| probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase)
protein [Ralstonia solanacearum GMI1000]
Length = 746
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 529 WLYKETGNK 537
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A ++ +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATDNEKAIEPAFGGEVA 96
Query: 181 KLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
+LV V +L I + N+ + LR MLL D RVVLI+L
Sbjct: 97 RLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 157 ASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|453077480|ref|ZP_21980226.1| GTP diphosphokinase [Rhodococcus triatomae BKS 15-14]
gi|452759155|gb|EME17528.1| GTP diphosphokinase [Rhodococcus triatomae BKS 15-14]
Length = 770
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A+ H Q RK+GDPY+TH + ILA L + T++A
Sbjct: 59 YPKANLATLQRAYDVAEERHADQKRKSGDPYITHPLAVATILAELGMDT-----TTLIAA 113
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +EFG+EVA LV GV++L + LGH EA
Sbjct: 114 LLHDTVEDTGYSLEQLTDEFGEEVAHLVDGVTKLDKV---------------VLGHAAEA 158
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 159 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 218
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 219 TVKWELEDLAFAILH 233
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 271 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 321
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE G+AAHW
Sbjct: 322 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTRDMHRTAEFGIAAHW 381
Query: 530 LYKETGNK 537
YKET K
Sbjct: 382 RYKETKGK 389
>gi|83719568|ref|YP_443112.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
gi|83653393|gb|ABC37456.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 725
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 217 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 267
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 268 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 327
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 328 RYKEAGAR 335
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 87/181 (48%), Gaps = 15/181 (8%)
Query: 113 RAHHGQFR-KTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVVDDACESLG 169
R H G R +G+ H T I+ L P + + A +A L D
Sbjct: 2 REHAGDARLPSGELLADHATGTSTIMQRLNVDPPATQAAALFALAPYLSD-------PEK 54
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGM 224
I E FGDEVA LV V +L + + LR + + V+ G E LR MLL
Sbjct: 55 QIAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRKMLLAF 114
Query: 225 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 284
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 115 AQDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLA 174
Query: 285 F 285
F
Sbjct: 175 F 175
>gi|373465559|ref|ZP_09557016.1| GTP diphosphokinase [Lactobacillus kisonensis F0435]
gi|371760145|gb|EHO48845.1| GTP diphosphokinase [Lactobacillus kisonensis F0435]
Length = 748
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 127/225 (56%), Gaps = 24/225 (10%)
Query: 99 FNDE---QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE QV+KA FA+ AH Q R++G+PY+TH I ILA L +TV AG
Sbjct: 26 MNDEHVKQVKKAYEFARIAHQDQKRQSGEPYITHPIQVAGILADLHMDP-----ETVSAG 80
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D LG I E FGD+VA +V GV++LS I + R A
Sbjct: 81 FLHDVVEDTGAVLGDIRELFGDDVALIVDGVTKLSKIKYKSSQERL------------AE 128
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R +LL M D RV+++KLADRLHNMRT+ +L P K R +A+ETL I+ +A RLG+
Sbjct: 129 NHRKLLLAMCKDIRVMIVKLADRLHNMRTLKSLRPDKQRRIAKETLEIYAPIADRLGIGT 188
Query: 276 LKAELEDLCFAVL--QMRADLASMWSPR--NRVGYSRRITTIVSS 316
+K ELED+ L Q + + + R RV Y ++ + V S
Sbjct: 189 IKWELEDISLRYLNPQQYYRIVHLMNSRRDQRVDYIKKAISEVKS 233
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YS++ KM K ++YD A+RV+VG +I+ CY++L +H
Sbjct: 244 IYGRPKHIYSVYRKMVEKHKQFSQIYDLLAIRVIVG---------SIKDCYAVLGAIHSK 294
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP+G LEVQIRT++MH AE G+AAHW YKE
Sbjct: 295 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPEGKPLEVQIRTEEMHRVAEFGIAAHWAYKE 354
>gi|359772044|ref|ZP_09275482.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia effusa NBRC 100432]
gi|359310808|dbj|GAB18260.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia effusa NBRC 100432]
Length = 789
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +++A A H GQFRK+GDPY+TH + ILA L + T+VA
Sbjct: 72 YPKANTALLEQAYDVADERHQGQFRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D L +E +FG EVA LV GV++L + LG EA
Sbjct: 127 LLHDTVEDTGYGLDELESDFGPEVAHLVDGVTKLDKV---------------ALGSAAEA 171
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 172 ETIRKMVIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 232 TVKWELEDLAFAILH 246
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 287 TVEGRPKHYWSIYQKMIVKGREFDDIHDLVGMRILCDE---------VRDCYAAVGVVHS 337
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE G+AAHW YK
Sbjct: 338 LWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTRDMHRTAEFGIAAHWRYK 397
Query: 533 ETGNK 537
E+G K
Sbjct: 398 ESGYK 402
>gi|254429854|ref|ZP_05043561.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
gi|196196023|gb|EDX90982.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
Length = 703
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 18/215 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV A FA++AH GQ+R+TGDPY+TH + IL + +++A +LHDV++
Sbjct: 22 QVVHAYHFAEQAHEGQYRRTGDPYITHPLAVANILTDMHMDHA-----SLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S + EF +EVA+LV GVS+++ I + ++A +LR M+L
Sbjct: 77 DTGFSKEQLANEFSEEVAELVDGVSKIAQIKF------------ESKAEQQAENLRKMML 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNMRT++ + K R +A ETL ++ +A RLG++ ++ E ED
Sbjct: 125 AMTRDIRVILIKLADRLHNMRTLHVMRAEKRRRIATETLELYAPIAFRLGMYNMRVEYED 184
Query: 283 LCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
L F A+ MRA L + R +TTI +S
Sbjct: 185 LAFHAIYPMRAKLIGQAVKKARGNRKEILTTIKTS 219
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 25/174 (14%)
Query: 359 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 418
R K + K + +K I T + E LE+E G+E + R
Sbjct: 194 RAKLIGQAVKKARGNRKE-------ILTTIKTSLEHCLEEE---------GIEARVLGRE 237
Query: 419 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 478
K LYSI++KM+ + + D R++V + CY +L H + PI
Sbjct: 238 KHLYSIYTKMKEQHKPFSDIMDVFGFRIIVD---------RVDTCYRVLGATHNYFTPIP 288
Query: 479 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
G F DYI PK +GYQSLHT ++ G LE+QIRT++M A +G+AAHWLYK
Sbjct: 289 GRFKDYIAIPKANGYQSLHTTLKARSGIPLEMQIRTEEMEAMANNGIAAHWLYK 342
>gi|150016418|ref|YP_001308672.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
gi|149902883|gb|ABR33716.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
Length = 738
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 14/190 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA FA++AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 EMVKKAYDFAEKAHKDQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S F E+A LV GV++L+ + ++ + T ++A+++R ML
Sbjct: 74 EDTEFSYDETVSLFNAEIANLVEGVTKLTKLGEMEYK---------TKEEQQADNVRKML 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 125 LAMAKDIRVIIIKLADRLHNMRTLKFMPAKKQKNKAKETLDIYAPLAHRLGMSKIKWELE 184
Query: 282 DLCFAVLQMR 291
DLCF L +
Sbjct: 185 DLCFRYLHEK 194
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLV---------HSVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 340 WKYKEGDN 347
>gi|408374217|ref|ZP_11171906.1| GTP pyrophosphokinase [Alcanivorax hongdengensis A-11-3]
gi|407765878|gb|EKF74326.1| GTP pyrophosphokinase [Alcanivorax hongdengensis A-11-3]
Length = 703
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 18/215 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV +A FA++AH GQ+R+TGDPY+TH + IL + +++A +LHDV++
Sbjct: 22 QVVRAYRFAEQAHEGQYRRTGDPYITHPLAVANILTDMHMDHA-----SLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + + EF +EVA+LV GVS+++ I + ++A +LR M+L
Sbjct: 77 DTGITKEQLATEFSEEVAELVDGVSKIAQIKF------------ESKAEQQAENLRKMML 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNMRT++ + K R +A ETL ++ +A RLG++ ++ E ED
Sbjct: 125 AMTRDIRVILIKLADRLHNMRTLHVMRAEKRRRIATETLELYAPIAFRLGMYNMRVEYED 184
Query: 283 LCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
L F A+ MRA L + R +TTI +S
Sbjct: 185 LAFHAIYPMRARLIGQAVKKARGNRKEILTTIKTS 219
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 18/149 (12%)
Query: 384 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 443
I T + E LE+E G+E + R K LYSI++KM+ + + D
Sbjct: 212 ILTTIKTSLEHCLEEE---------GIEARVLGREKHLYSIYTKMKEQHKPFSDIMDVFG 262
Query: 444 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 503
R++V + CY +L VH + PI F DYI PK +GYQSLHT ++
Sbjct: 263 FRIIVD---------RVDTCYRVLGAVHNYFTPIPNRFKDYIAIPKANGYQSLHTTLKAR 313
Query: 504 DGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
G LE+QIRT++M A +G+AAHWLYK
Sbjct: 314 SGIPLEMQIRTEEMEAMANNGIAAHWLYK 342
>gi|347753839|ref|YP_004861403.1| (p)ppGpp synthetase RelA/SpoT family [Candidatus
Chloracidobacterium thermophilum B]
gi|347586357|gb|AEP10887.1| (p)ppGpp synthetase, RelA/SpoT family [Candidatus
Chloracidobacterium thermophilum B]
Length = 731
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 17/193 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + + +++A + + H GQ RK+G+PYL H + ILA + + V V G
Sbjct: 15 HPNADLDLLRRAYLLSAQMHKGQVRKSGEPYLMHPLAVAYILAEM-----RLDVICVTTG 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D +L +E++FG E+A LV G++++S I R R +A
Sbjct: 70 LLHDVVEDTHVTLEELEQQFGPEIAHLVDGLTKISNIEYTSREDR------------QAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R MLL MVDD RVVL+KLADRLHNMRT+ LPP K A AQETL I+ +A RLG+
Sbjct: 118 TVRKMLLAMVDDIRVVLVKLADRLHNMRTLDYLPPEKRAAKAQETLDIYAPIAHRLGMGK 177
Query: 276 LKAELEDLCFAVL 288
++ ELEDL F L
Sbjct: 178 IRGELEDLSFQYL 190
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V + R+K LYS++ K++ + + I +VYD A+RV+ D I CY+ + +VH
Sbjct: 232 VEIQGRIKRLYSLYRKLKERAISIDQVYDLMAVRVITQD---------IADCYAAVGVVH 282
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+W PI G F D+I P+ + YQSLHT+V G G EVQIRT +MH+ AE G+AAHW Y
Sbjct: 283 NIWKPIPGRFKDWIGIPRNNLYQSLHTSVVGDIGHPFEVQIRTAEMHKIAEEGIAAHWRY 342
Query: 532 KE 533
KE
Sbjct: 343 KE 344
>gi|332284967|ref|YP_004416878.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
gi|330428920|gb|AEC20254.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
Length = 770
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 14/160 (8%)
Query: 389 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 448
+ A LE+EL + ++IP +S R K +YSI++KMR K + +++D RALR++V
Sbjct: 251 ITAAVSRLEREL--ADAHIPAQ---VSGRPKHIYSIWNKMRNKGIDFSQLFDLRALRIIV 305
Query: 449 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 508
D+ + CY++L + H LW P+ EFDDYI PKP+GY+SLHT V G
Sbjct: 306 QDE---------RACYAVLALAHSLWTPVSDEFDDYISRPKPNGYRSLHTVVTDTQGRTF 356
Query: 509 EVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 548
E+QIRTQ+MHE+AE+G+AAHW YKE G + +S+ D
Sbjct: 357 EIQIRTQEMHEFAEYGMAAHWRYKEAGPRGGQVSAAGRYD 396
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 101 DEQ----VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
DEQ + KA+ + + G TG+P HC ILA L + RA +
Sbjct: 41 DEQGTDLLAKAVQWVREPLAGLTASTGEPLGEHCAEVVLILAELGTDAETRASALITVLP 100
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
L A + + FG EV LV G L + L + + G ++
Sbjct: 101 LAAPDSAAGTRQDPLRKAFGSEVVSLVQGTRALLRLGYLTGQ----AADSTASGTDQKEM 156
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R MLL M D R+VL++LA RL ++R + A+ET+ ++ LA+RLG+W +
Sbjct: 157 QRKMLLAMAADLRIVLMRLASRLQSLRWYATTKIPCPSSFARETMELYTPLANRLGIWQI 216
Query: 277 KAELEDLCFAVLQ 289
K E+EDL F L+
Sbjct: 217 KWEMEDLAFRFLE 229
>gi|379709769|ref|YP_005264974.1| GTP pyrophosphokinase [Nocardia cyriacigeorgica GUH-2]
gi|374847268|emb|CCF64338.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp
synthetase I) ((p)ppGpp synthetase) [Nocardia
cyriacigeorgica GUH-2]
Length = 803
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 92 YPKANLTLLQRAFDVADERHAKQFRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 146
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA LV GV++L +N LG EA
Sbjct: 147 LLHDTVEDTGYSLEQLTADFGAEVAHLVDGVTKLDKVN---------------LGAAAEA 191
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 192 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQAKKAKETLEVIAPLAHRLGMA 251
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 252 TVKWELEDLAFAILH 266
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T + + R K +SI+ KM K ++D +R++ + +
Sbjct: 295 IVNTLAASRINAIVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGIRILCDE---------V 345
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRTQ MH
Sbjct: 346 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPDGKPLEVQIRTQDMHRT 405
Query: 521 AEHGLAAHWLYKETGNKLQS 540
AE G+AAHW YKET K S
Sbjct: 406 AEFGIAAHWRYKETRGKHSS 425
>gi|359461025|ref|ZP_09249588.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris sp. CCMEE 5410]
Length = 732
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A F + H GQ R +G+PY+ H + +L L S+ + AG LHDVV+D
Sbjct: 21 RAFNFGYQLHEGQRRASGEPYIAHPVSVAELLRDLGGSAA-----MIAAGFLHDVVEDTD 75
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+ +IE EFG EV +LV GV++LS N + R EA + R M L M
Sbjct: 76 VTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTER------------EAENFRRMFLAMA 123
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ LPPAK R +AQET ++ LA+RLG+W K ELEDL F
Sbjct: 124 QDIRVIVVKLADRLHNMRTLEHLPPAKQRRIAQETRDVFAPLANRLGIWRFKWELEDLAF 183
Query: 286 AVLQ 289
L+
Sbjct: 184 KYLE 187
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ +S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 228 LEISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVH 278
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW Y
Sbjct: 279 DCFRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKY 338
Query: 532 KETGNK 537
KE+ N+
Sbjct: 339 KESSNQ 344
>gi|91788565|ref|YP_549517.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas sp. JS666]
gi|91697790|gb|ABE44619.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Polaromonas sp. JS666]
Length = 750
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI KMR K +G +V+D RALRV+ D NG CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADING---------CYAALG 302
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + P+ GEFDDYI PK +GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAH
Sbjct: 303 FVHSRFTPVAGEFDDYIAKPKSNGYQSLHTVVRDAAGRAVEIQIRTQAMHDHAEHGVAAH 362
Query: 529 WLYKETGNKLQS-ISSMDESD 548
W YKE G K S +S+ E D
Sbjct: 363 WAYKEAGTKGYSGVSASSEYD 383
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 77 PKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRI 136
P ++P IV P + +A AFA+ G+ TG+ L H I
Sbjct: 11 PTAPQRPNASIVTAT--ADSPPDQPNALARARAFAEPLIAGETLDTGENILAHADAVAAI 68
Query: 137 LAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE----EFGDEVAKLVAGVSRLSYI 192
L + S +A +V AC+ L +E FG A L ++L ++
Sbjct: 69 LKGIGGSEAMQAATYLV---------HACQHLTKPQEVIAKAFGANYAALAIETTKLVHV 119
Query: 193 NQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP 250
R+ R + L A ++R MLL D RVV+++LA RL +R A
Sbjct: 120 Q---RQARTADAKAQLLDDPAAQTENVRKMLLAFSRDLRVVMLRLASRLQTLRYYAATRQ 176
Query: 251 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
+ A+A E+L ++ LA+RLG+W +K E+EDL F L+
Sbjct: 177 SAPLALAHESLHVFAPLANRLGIWQIKWEMEDLAFRFLE 215
>gi|419845965|ref|ZP_14369223.1| RelA/SpoT family protein [Haemophilus parainfluenzae HK2019]
gi|386414595|gb|EIJ29147.1| RelA/SpoT family protein [Haemophilus parainfluenzae HK2019]
Length = 706
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A + +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAEMHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
++A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 IMAALLHDVIEDTPYTESQLKDEFGASVAEIVEGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFEAMHPR 193
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LY I+ KMR KD H + D A RV+V ++ CY L
Sbjct: 228 GIPSRIWGREKHLYKIYQKMRMKDQKFHSIMDIYAFRVIVN---------SVDDCYRGLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G+ DYI P+ +GYQ+L T++ GP G +EV ++T++M + AE G+ AH
Sbjct: 279 QMHSLYKPRPGKVKDYIAVPRANGYQALQTSMIGPHGVPVEVHLQTEEMEQVAEMGITAH 338
Query: 529 WLYKETG 535
W+YKE G
Sbjct: 339 WVYKEGG 345
>gi|312880418|ref|ZP_07740218.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
gi|310783709|gb|EFQ24107.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
Length = 760
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +L+ R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 273 GVEASLNGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVVVG---------GLAECYQVLG 323
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 324 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHRLAEYGIAAH 383
Query: 529 WLYKETG---NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W YKE N+L + +E+ S+ T+ + L TD+
Sbjct: 384 WHYKEGKQRVNQLDRRLTWIRQVLESQQDGSEPTEFLDNLKTDVL 428
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 106/183 (57%), Gaps = 17/183 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA AH Q R +G+PY+ H I ILA + + V+T+ A +LHDV++D
Sbjct: 70 EALVFAAEAHREQKRHSGEPYVVHTISVASILADM-----ELDVETLSAALLHDVLEDTP 124
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++E FG EV LV GV++L + ++ +A +LR M L M
Sbjct: 125 VGDAVLKERFGPEVLTLVDGVTKLG------------KLPFKSIEDYQAENLRKMFLVMA 172
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLIKLADRLHNMRT+ A + A+A+ETL I+ LA RLG++ +K ELEDL F
Sbjct: 173 KDIRVVLIKLADRLHNMRTLQAHRRDRQLAIAKETLEIYAPLAHRLGIYQVKRELEDLSF 232
Query: 286 AVL 288
+L
Sbjct: 233 KIL 235
>gi|319651680|ref|ZP_08005807.1| GTP pyrophosphokinase [Bacillus sp. 2_A_57_CT2]
gi|317396747|gb|EFV77458.1| GTP pyrophosphokinase [Bacillus sp. 2_A_57_CT2]
Length = 744
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 110/196 (56%), Gaps = 24/196 (12%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML--IPSSGKRAVDTVV 153
NDE V+KA FAK AH Q+RK+G+PY+ H I ILA L PS TV
Sbjct: 33 LNDEHAELVKKAYEFAKHAHREQYRKSGEPYIIHPIQVAGILADLEMDPS-------TVA 85
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
AG LHDVV+D SL +IEE F EVA LV GV++L I + ++
Sbjct: 86 AGFLHDVVEDTEISLENIEESFNSEVAMLVDGVTKLGKIKY------------KSQEEQQ 133
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+
Sbjct: 134 AENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAHRLGI 193
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED L
Sbjct: 194 SKIKWELEDTALRYLN 209
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 10/133 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H
Sbjct: 251 ISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLGIIHTC 301
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH AE G+AAHW YKE
Sbjct: 302 WKPMPGRFKDYIAMPKQNMYQSLHTTVIGPKGDPLEVQIRTMDMHRIAEFGIAAHWAYKE 361
Query: 534 TGNKLQSISSMDE 546
G ++ SS +E
Sbjct: 362 -GKRVNEGSSFEE 373
>gi|291278481|ref|YP_003495316.1| GTP pyrophosphokinase [Deferribacter desulfuricans SSM1]
gi|290753183|dbj|BAI79560.1| GTP pyrophosphokinase [Deferribacter desulfuricans SSM1]
Length = 710
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 17/191 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++ KA +A H GQ RK+G+PYL+H ++ ILA + +DTVVAG+LHD +
Sbjct: 26 EKLHKAYVYAATKHRGQLRKSGEPYLSHPLNVAYILAEM-----NMDLDTVVAGLLHDTL 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + FG++VA LV GVS++ IN + H ++A R ML
Sbjct: 81 EDTDATYEELVNLFGEDVAFLVDGVSKIGKIN--FKSHE----------EKQAEAFRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV++IKLADRLHNMRTI LP K + +A+ETL I+ LA RLG+ +K ELE
Sbjct: 129 ISMSKDIRVIVIKLADRLHNMRTINFLPEEKKKRIAKETLEIYAPLAHRLGIAWIKWELE 188
Query: 282 DLCFAVLQMRA 292
DL F +L A
Sbjct: 189 DLSFRILNPEA 199
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 82/142 (57%), Gaps = 18/142 (12%)
Query: 392 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 451
+E LEKE G++ ++ R K YSI++KM RK ++YD ALRV+V
Sbjct: 225 VKEVLEKE---------GIKAEVTGRPKHFYSIYTKMIRKKTSFDEIYDLLALRVLVN-- 273
Query: 452 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 511
+ CY++L I+H LW PI G DYI PK + YQSLHT V GP G +E Q
Sbjct: 274 -------TVGECYAVLGIIHNLWKPIQGRIKDYIAMPKSNMYQSLHTTVIGPRGMKVEFQ 326
Query: 512 IRTQKMHEYAEHGLAAHWLYKE 533
IRT +MH AE G+AAHW YKE
Sbjct: 327 IRTYEMHRIAEEGIAAHWKYKE 348
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum]
Length = 721
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF D+ V KA A++AH GQ R TGDPYL HC+ T +LA + +S V AG
Sbjct: 211 HKIFYDDFVVKAFYEAEKAHRGQVRATGDPYLQHCVETAVLLATIGANS-----TVVAAG 265
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD + I G VA LV GVS+LS +++L R N T+ EA+
Sbjct: 266 LLHDTLDDTFITYDYIFRTLGAGVADLVEGVSKLSQLSKLARD---FNTASKTV---EAD 319
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VL+KLADRLHNM T+ ALPP K + A+ETL I+ LA+RLG+
Sbjct: 320 RLHTMFLAMTD-ARAVLVKLADRLHNMITLDALPPMKQQRFAKETLEIFAPLANRLGIST 378
Query: 276 LKAELEDLCFAVLQ 289
K +LE+ CF L
Sbjct: 379 WKEQLENQCFKHLN 392
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI+ KM +K + + +V+D LR++V + CY L +VH+L
Sbjct: 433 LSGRHKSLYSIYCKMLKKKLNMDEVHDIHGLRLIVETEED---------CYKALQVVHQL 483
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G DYI PK +GYQSLHT V G LEVQIRT++MH AE+G AAHW YKE
Sbjct: 484 WCEVPGRSKDYIAKPKCNGYQSLHTVVLGEGMVPLEVQIRTKEMHLQAEYGFAAHWRYKE 543
Query: 534 TGNKLQSI 541
K S
Sbjct: 544 DDCKHSSF 551
>gi|119476417|ref|ZP_01616768.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
gi|119450281|gb|EAW31516.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
Length = 741
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E LS R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 254 GIEADLSGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV---------PDVRDCYAALG 304
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI NPK +GY+SLHTAV GP+G ALE+QIRT MHE AE G+ AH
Sbjct: 305 LVHSLWRNIPNEFDDYIANPKDNGYRSLHTAVIGPEGKALEIQIRTFSMHEEAEFGICAH 364
Query: 529 WLYKETGNK 537
W YK + N+
Sbjct: 365 WRYKGSDNQ 373
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 9/142 (6%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T++A IL+ V + + + + FG+E+ L+ GV R++ ++ + I + L
Sbjct: 83 ETLIAAILYRAVREEKLQIELVAKNFGEEIVHLINGVLRMAAMSTV------ITGDNPVL 136
Query: 210 GHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
G EA +++R ML+ +VDD RV L+KLA+R +R + PAK VA+E ++ L
Sbjct: 137 GQAEAQKDNIRKMLVALVDDVRVALVKLAERTCAIRMVKN-NPAKRYRVAREVHDVYAPL 195
Query: 268 ASRLGLWALKAELEDLCFAVLQ 289
A RLG+ +K ELEDL F LQ
Sbjct: 196 AHRLGIGHIKWELEDLSFRYLQ 217
>gi|381191174|ref|ZP_09898685.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
gi|380450963|gb|EIA38576.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
Length = 727
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVM 220
D + +E FG V ++V G +++S + +L L EE A DLR M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANLEGEERRAEDLRQM 129
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ LA RLG+ LK EL
Sbjct: 130 FIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPLAHRLGMGQLKWEL 189
Query: 281 EDLCFAVLQMRA 292
EDL F L A
Sbjct: 190 EDLSFRYLHPEA 201
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 373 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 432
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 433 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 488
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 489 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSI 541
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYK E ++ +
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWL 384
Query: 542 SSMDESDIEASSS 554
S+ E E SSS
Sbjct: 385 KSIQEWQKEFSSS 397
>gi|46199657|ref|YP_005324.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|384431896|ref|YP_005641256.1| (p)ppGpp synthetase I SpoT/RelA [Thermus thermophilus SG0.5JP17-16]
gi|46197283|gb|AAS81697.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|333967364|gb|AEG34129.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus thermophilus
SG0.5JP17-16]
Length = 727
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVM 220
D + +E FG V ++V G +++S + +L L EE A DLR M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANLEGEERRAEDLRQM 129
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ LA RLG+ LK EL
Sbjct: 130 FIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPLAHRLGMGQLKWEL 189
Query: 281 EDLCFAVLQMRA 292
EDL F L A
Sbjct: 190 EDLSFRYLHPEA 201
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 373 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 432
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 433 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 488
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 489 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSI 541
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYK E ++ +
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWL 384
Query: 542 SSMDESDIEASSS 554
S+ E E SSS
Sbjct: 385 KSIQEWQKEFSSS 397
>gi|300088447|ref|YP_003758969.1| (p)ppGpp synthetase I [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528180|gb|ADJ26648.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 733
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 11/188 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT--VVAGILHDVV 161
+Q A FA AH GQ R++G+PY+ H + LA L +DT + A +LHDV
Sbjct: 22 IQAAYDFAAEAHQGQTRRSGEPYIEHPLAVAMELADL-------QLDTTAIAAALLHDVP 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D+ L IEE+FG +VA+LV GV++L+ ++ R + N T +A +LR ML
Sbjct: 75 EDSDIPLAGIEEKFGPDVARLVDGVTKLAKLSLAAPGETRFSGN--TTYERQAENLRKML 132
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M +D RVV IKL+DRLHNMRT+ A+P K + +A+ET+ I+ LA RLG+W +K +LE
Sbjct: 133 VAMAEDLRVVFIKLSDRLHNMRTLDAMPSEKQKDIARETMEIYAPLAHRLGIWEIKWQLE 192
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 193 DLSFRFLE 200
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 19/159 (11%)
Query: 386 LTSLVACEEALEKELLISTSYI-------PGMEVTLSSRLKSLYSIFSKMRRKDV-GIH- 436
L L+A + A +E + I G++ ++ R K ++S+ K + G H
Sbjct: 207 LARLIAGKRAQREEFITKVINILKSEFENAGLKPEVNGRAKHIFSLHQKAEKYSAQGRHF 266
Query: 437 -KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQS 495
++YD A+RV+V N CY+ L VH LW PI G FDDYI NPKP+GYQS
Sbjct: 267 DEIYDLLAIRVLVNTVNE---------CYTALGAVHNLWHPIPGSFDDYIANPKPNGYQS 317
Query: 496 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 534
LHTAV +G+ LE+QIRT MH AE+G+AAHW YKE
Sbjct: 318 LHTAVLSLNGTPLEIQIRTYDMHRLAEYGVAAHWRYKEN 356
>gi|412341915|ref|YP_006970670.1| GTP pyrophosphokinase [Bordetella bronchiseptica 253]
gi|408771749|emb|CCJ56553.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 253]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQRALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+E
Sbjct: 147 LAMAADLRIVLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEME 206
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 207 DLAFRFLE 214
>gi|187477599|ref|YP_785623.1| GTP pyrophosphokinase [Bordetella avium 197N]
gi|115422185|emb|CAJ48709.1| putative GTP pyrophosphokinase [Bordetella avium 197N]
Length = 743
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 17/164 (10%)
Query: 393 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ +++E I+ + + G++ +S R K +YSI++K R K + K+YD RAL
Sbjct: 225 EKRVQREAFITDTIVRIQAVLARAGIKGEVSGRPKHIYSIWNKTRIKGLDFSKLYDLRAL 284
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V D ++ CYS L +VH LW PI EFDDYI PKP+GY+SLHT V +
Sbjct: 285 RVIVDD---------VRDCYSALALVHELWTPIPEEFDDYISRPKPNGYRSLHTVVMDEE 335
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 548
G A EVQIRT++MH++AE+G+AAHW YKE G K +++ + D
Sbjct: 336 GRAFEVQIRTREMHQFAEYGMAAHWRYKEAGAKGGQVAASSDYD 379
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 234
FG EV +LV G L + + R+ + + + R MLL M D R+VL++
Sbjct: 102 FGAEVVRLVQGARALLRLGVVARQ----AADTAAVTGSQKEMQRKMLLAMAADLRIVLMR 157
Query: 235 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
LA RL ++R A A+ETL ++ LA+RLG+W +K E+EDL F L+
Sbjct: 158 LASRLQSLRWHAETKTPCNPAFARETLDLYTPLANRLGIWQIKWEMEDLSFRFLE 212
>gi|410473818|ref|YP_006897099.1| GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
gi|408443928|emb|CCJ50622.1| putative GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGALALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+E
Sbjct: 147 LAMAADLRIVLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEME 206
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 207 DLAFRFLE 214
>gi|333915501|ref|YP_004489233.1| (p)ppGpp synthetase I SpoT/RelA [Delftia sp. Cs1-4]
gi|333745701|gb|AEF90878.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia sp. Cs1-4]
Length = 749
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 530 LYKETGNK 537
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--EANDLRVMLLGMVDDP 228
I + FG+ A L ++L + Q + R + L E + ++R MLLG D
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQ---QARGAELGGQYLDDEATQTENVRKMLLGFSRDL 163
Query: 229 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
RVVL++LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L
Sbjct: 164 RVVLLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFL 223
Query: 289 Q 289
+
Sbjct: 224 E 224
>gi|332528308|ref|ZP_08404308.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
gi|332042179|gb|EGI78505.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
Length = 739
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
GMEV + R K +YSI KMR K + ++YD RALRVVV D + CY+ L
Sbjct: 233 GMEVEVQGRPKHIYSIIRKMRGKSLDFDRIYDVRALRVVVSD---------VPACYAALS 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + P+ EFDDYI PKP+GYQSLHT V+ +G A+E+QIRTQ MHE+AE G+AAH
Sbjct: 284 WVHSHYTPVVEEFDDYIARPKPNGYQSLHTVVRDAEGRAIEIQIRTQAMHEHAELGVAAH 343
Query: 529 WLYKETGNK 537
W YKE G K
Sbjct: 344 WAYKEAGAK 352
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A AFA+ G+ +TG+ L H IL + + +A +V + ++
Sbjct: 8 IARARAFAEPLLAGETLETGENTLAHADAVASILRTIGGAEAMQAATYLVYASAY--LNK 65
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT--------LGHEEAN 215
E I + FG+ A L ++L + + R + + + T LG +
Sbjct: 66 PREV---IAQAFGESYAALAVETTQLVVVQRQARAKAQRELLEKTGSEAAGMDLGAVQIE 122
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA----LPPAKARAVAQETLLIWCSLASRL 271
++R MLL D RVVL++LA RL +R A LPP +A E+L ++ LA+RL
Sbjct: 123 NVRKMLLAFSRDLRVVLLRLASRLQTLRWFAASKRPLPPG----LAAESLHVFAPLANRL 178
Query: 272 GLWALKAELEDLCFAVLQ 289
G+W +K E+EDL F L+
Sbjct: 179 GIWEIKWEMEDLAFRFLE 196
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ +++ + K+ +LR +L WE+ L +S + G A G +V+ + ++ P I
Sbjct: 359 TADSAYDAKIAVLRQLLAWEQDL---SSGKDESASGLARGAAGAVLDDRIYVLT-PQATI 414
Query: 785 MRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+ L G+T D A + G + V+G +V NT LK+G VE+
Sbjct: 415 VDLPQGATPVDFAYSLHTDLGHHCRGARVDGAMVPLNTPLKNGQTVEI 462
>gi|289434803|ref|YP_003464675.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171047|emb|CBH27589.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 738
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EEEFG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEEFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|254512101|ref|ZP_05124168.1| RelA/SpoT family protein [Rhodobacteraceae bacterium KLH11]
gi|221535812|gb|EEE38800.1| RelA/SpoT family protein [Rhodobacteraceae bacterium KLH11]
Length = 710
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N E++++A F ++ H GQFR +G+PY +H + IL + +R D T++
Sbjct: 16 PKTNAERIKRAYEFGQQMHDGQFRHSGEPYFSHPVAVAAIL------TEQRLDDATIITA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S G + E FGDEVAKLV GV++L+ N+ + ++A
Sbjct: 70 LLHDTIEDTKASYGKVAELFGDEVAKLVDGVTKLT------------NLQLSSRETKQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 118 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPDKQVQKARETMDIYAPLAGRMGMQW 177
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 178 MREELEDLAFRVL----------NPEGRQSIIRRFITL 205
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 11/155 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ KD G ++ D R++ + + CY L
Sbjct: 228 GIEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIITRSE---------EDCYRTLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 279 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAETGVAAH 338
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDT-DDH 562
W Y++ G + ++ ++D + A+ + D+ DDH
Sbjct: 339 WSYRD-GVRSENPFAVDPAKWIANLTEQFDSEDDH 372
>gi|55981686|ref|YP_144983.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB8]
gi|55773099|dbj|BAD71540.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp
synthase) [Thermus thermophilus HB8]
Length = 727
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A FA+ AH GQ R++G+PY+TH + ILA L + DTV AG+LHD ++
Sbjct: 26 KVREAYRFAEEAHRGQLRRSGEPYITHPVAVAEILAGL-----QMDADTVAAGLLHDTLE 80
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVM 220
D + +E FG V ++V G +++S + +L L EE A DLR M
Sbjct: 81 DCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANLEGEERRAEDLRQM 129
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ LA RLG+ LK EL
Sbjct: 130 FIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPLAHRLGMGQLKWEL 189
Query: 281 EDLCFAVLQMRA 292
EDL F L A
Sbjct: 190 EDLSFRYLHPEA 201
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 373 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 432
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQRAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 433 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 488
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 489 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSI 541
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYK E ++ +
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWL 384
Query: 542 SSMDESDIEASSS 554
S+ E E SSS
Sbjct: 385 KSIQEWQKEFSSS 397
>gi|33602751|ref|NP_890311.1| GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|427815767|ref|ZP_18982831.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
gi|33577193|emb|CAE35750.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|410566767|emb|CCN24336.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+E
Sbjct: 147 LAMAADLRIVLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEME 206
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 207 DLAFRFLE 214
>gi|410421226|ref|YP_006901675.1| GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
gi|408448521|emb|CCJ60204.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+E
Sbjct: 147 LAMAADLRIVLMRLASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEME 206
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 207 DLAFRFLE 214
>gi|374584179|ref|ZP_09657271.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
gi|373873040|gb|EHQ05034.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
Length = 690
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K LYS++SKM++ GIH++YD R +R++V + I+ CY L IVH L
Sbjct: 249 IDGRAKHLYSVYSKMQKYGKGIHEIYDLRGVRIIVDE---------IRDCYGALGIVHTL 299
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK- 532
W P+ G F DYI PK +GYQSLHT V GPDG LEVQIRTQ+M E AEHG+AAHWLYK
Sbjct: 300 WPPLPGRFKDYIAMPKSNGYQSLHTTVVGPDGRPLEVQIRTQEMDERAEHGIAAHWLYKN 359
Query: 533 ----ETGNK-----LQSISSMDESDIEASSSLSKD-TDDHNPLDTDLF 570
E G++ L+++S + + S +D D+ NP D +F
Sbjct: 360 DMRAERGDQGKLEWLRTLSRITQEFQGDSKDFIEDLRDELNPKDVYVF 407
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 12/193 (6%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + +++A FA RAH Q R +G+PY+ H + + M + ++ T+ A +
Sbjct: 27 PSVDLRTIRRAFLFAHRAHKDQRRLSGEPYIIHPV----LAEMGLDTA------TIAAAL 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D SI EFG+EV LV V+++S + + + ++ + E A +
Sbjct: 77 LHDVVEDTSFGEDSIRREFGEEVNMLVRAVTKISLVKKDSMKDQKPSSE--LKAREAAEN 134
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
+R+MLL D RV+LIKLAD+LHNM+T+ P K +A+E + I+ +A RLG++ +
Sbjct: 135 IRLMLLATTRDVRVILIKLADKLHNMQTLGFQKPHKVERIAREVIDIYAPIAGRLGMFRM 194
Query: 277 KAELEDLCFAVLQ 289
K+ELEDL F LQ
Sbjct: 195 KSELEDLAFGALQ 207
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 767 DSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKD 822
D + P +V + P G+I+ L GST D A ++ GL K VN ++V TEL+
Sbjct: 397 DELNPKDVYVFT-PKGDIINLPQGSTVLDFAFRIHTDIGLRCKSAKVNDRIVPLRTELRS 455
Query: 823 GDIVEV 828
GD +E+
Sbjct: 456 GDRIEI 461
>gi|160903362|ref|YP_001568943.1| (p)ppGpp synthetase I SpoT/RelA [Petrotoga mobilis SJ95]
gi|160361006|gb|ABX32620.1| (p)ppGpp synthetase I, SpoT/RelA [Petrotoga mobilis SJ95]
Length = 712
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 12/209 (5%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A A+ +H GQFR +G+ + H G ILA L K VDT++AG+LHDVV
Sbjct: 26 ERIKIAYELAETSHSGQFRDSGEEFFEHPKSVGLILAGL-----KMDVDTIIAGLLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S+ I++ FG +VA +V+GV+++S L+ + R+N N E+ +R ML
Sbjct: 81 EDCGVSIDKIKDLFGIDVANIVSGVTKISN----LKLNERLNENDMK-SLEKVETIRKML 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
M +D RV+++KLADRLHNMRT+ + K A A ETL I+ +A RLG++ +K ELE
Sbjct: 136 FAMSEDIRVIIVKLADRLHNMRTLEFVDRKKQIAKADETLKIYAPIAHRLGIYKMKEELE 195
Query: 282 DLCFAVL--QMRADLASMWSPRNRVGYSR 308
DL F L + DL + + R+G +R
Sbjct: 196 DLSFRYLYPETYFDLKTKIEEKIRLGQNR 224
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 15/165 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T+ R K LYSI+ KM RK + ++YD ALR++ D+N CY++L I
Sbjct: 241 IKATVEGRSKHLYSIWDKMIRKGKTLDEIYDYIALRIITEDQNK---------CYAVLGI 291
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H +W P+ G DYI PK +GY+SLHT V G LE+QIR +MHE AE+GLAAHW
Sbjct: 292 IHSIWSPVPGRIKDYIATPKFNGYKSLHTTVITHKGDPLEIQIRDWEMHEEAEYGLAAHW 351
Query: 530 LYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 572
+YKE + KL+ ++ + +E ++++ + ++T+L K
Sbjct: 352 VYKEGVSQEKLKFLTDL----MELHRYIAQNAFELKDIETNLLSK 392
>gi|386333316|ref|YP_006029485.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
gi|334195764|gb|AEG68949.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
Length = 746
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 390 VAC---EEALEKELLI--------STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 438
+AC E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +
Sbjct: 217 IACLLDEKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADL 276
Query: 439 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 498
YD RA RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT
Sbjct: 277 YDVRAFRVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHT 327
Query: 499 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
V G DG ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 328 VVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 366
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 43 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 97
Query: 182 LVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLA 236
LV V +L I + + NV N+ + LR MLL D RVVLI+LA
Sbjct: 98 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 157
Query: 237 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 158 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|33594456|ref|NP_882100.1| GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|384205753|ref|YP_005591492.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|408416485|ref|YP_006627192.1| GTP pyrophosphokinase [Bordetella pertussis 18323]
gi|33564531|emb|CAE43846.1| putative GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|332383867|gb|AEE68714.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|401778655|emb|CCJ64097.1| putative GTP pyrophosphokinase [Bordetella pertussis 18323]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+ A A+A Q TG+P +H RILA L R V V+A + D+
Sbjct: 32 QLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATR-VAAVLASLPADLNA 90
Query: 163 DACESLGS-IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
A + EFG EVA+LV G L + + R G+ + R ML
Sbjct: 91 PAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R+VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+E
Sbjct: 147 LAMAADLRIVLMRLASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEME 206
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 207 DLAFRFLE 214
>gi|420144910|ref|ZP_14652389.1| GTP pyrophosphokinase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403467|gb|EJN56709.1| GTP pyrophosphokinase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 746
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 110/194 (56%), Gaps = 20/194 (10%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V +KA+ FA H QFR++G+PY+ H I ILA L K TV +G
Sbjct: 20 MNDEHVAFVKKALDFANYVHKEQFRQSGEPYIVHPIQVAAILAEL-----KMDPATVASG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D +LG I+E FG +VA +V GV++LS I + + E A
Sbjct: 75 FLHDVVEDTNITLGDIQELFGHDVAVIVDGVTKLSKIKYVAHKD------------ELAE 122
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R M+L M D RVV++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 NHRKMILAMAKDLRVVMVKLADRLHNMRTLKHLRPEKQRRIANETLEIYAPLADRLGISQ 182
Query: 276 LKAELEDLCFAVLQ 289
K ELED L
Sbjct: 183 FKWELEDTALRYLN 196
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ + R K +YSI+ KMR K ++YD A+RV+V I+ CY++L
Sbjct: 233 NIKYEIYGRPKHIYSIYKKMRDKHKQFEEIYDLLAIRVIVD---------TIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGQPLEIQIRTEEMHQVAEYGVAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|398833360|ref|ZP_10591494.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
gi|398221717|gb|EJN08119.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
Length = 750
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L
Sbjct: 250 GIRAEVSGRPKHIYSIWNKMRGKSLDFSELYDVRAFRVIVDD---------VKTCYTVLG 300
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GYQSLHT V DG A+EVQ+RT +MH +AE+G+AAH
Sbjct: 301 IVHDIWTPIPEEFDDYISRPKANGYQSLHTVVMAEDGRAIEVQVRTHEMHYFAEYGVAAH 360
Query: 529 WLYKETGNKLQSISSMDE 546
W YKE+G + DE
Sbjct: 361 WRYKESGGSNFAAQKYDE 378
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
V+T +AG+L ++ E +EE FG E A+LV GV +L + L + + V +G
Sbjct: 67 VETRLAGLLFELKMIHPELDERLEERFGRETAELVGGVRQLMRFHSLTFQAPQQEVLRGK 126
Query: 209 LGHEEA----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK--ARAVAQETLL 262
++A LR MLL M D RVVL++LA R+ +R +R A+ET
Sbjct: 127 HAAQQAASQVETLRKMLLAMASDMRVVLVRLASRVATLRYFAETKQENDASRQYARETFE 186
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
++ LA+RLG+W LK ELEDL F
Sbjct: 187 LYAPLANRLGIWQLKWELEDLSF 209
>gi|407646893|ref|YP_006810652.1| GTP pyrophosphokinase [Nocardia brasiliensis ATCC 700358]
gi|407309777|gb|AFU03678.1| GTP pyrophosphokinase [Nocardia brasiliensis ATCC 700358]
Length = 795
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A H QFRK+GDPY+TH + ILA L T+VA
Sbjct: 84 YPKANLTLLQRAFDVADERHKHQFRKSGDPYITHPLAVANILAEL-----GMDTTTLVAA 138
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA LV GV++L +N LG EA
Sbjct: 139 LLHDTVEDTGYSLEQLTLDFGPEVAHLVDGVTKLDKVN---------------LGAAAEA 183
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 184 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQAKKAKETLEVIAPLAHRLGMA 243
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 244 TVKWELEDLAFAILH 258
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T + + R K +SI+ KM K ++D +R++ + +
Sbjct: 287 IVNTLAASRINAIVEGRPKHYWSIYQKMIVKGKDFDDIHDLVGIRILCDE---------V 337
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRTQ MH
Sbjct: 338 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPDGKPLEVQIRTQDMHRT 397
Query: 521 AEHGLAAHWLYKETGNKLQSISS 543
AE G+AAHW YKET K + S+
Sbjct: 398 AEFGIAAHWRYKETRGKHSNDST 420
>gi|410696071|gb|AFV75139.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus oshimai JL-2]
Length = 732
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 18/192 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV+ A FA+ AH GQ R++G+PY+TH + ILA L + +TV+AG+LHDVV+
Sbjct: 31 QVEAAYRFAEAAHAGQRRRSGEPYITHPVAVAEILASL-----RMDAETVMAGLLHDVVE 85
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVM 220
D + +E FG V ++V G +++S + ++ L EE A DLR M
Sbjct: 86 DCGVAPEELERRFGAGVRRIVEGETKVSKLYKM-----------ANLEGEERRAEDLRQM 134
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M +D R++++KLADRLHN+RT+ +PP K R +AQETL I+ LA RLG+ +K EL
Sbjct: 135 FIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQRRIAQETLEIYAPLAHRLGMGQIKWEL 194
Query: 281 EDLCFAVLQMRA 292
EDL F L A
Sbjct: 195 EDLSFRYLHPEA 206
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 22/204 (10%)
Query: 362 FLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSL 421
L L + EA++K + ++ +EALEK+ L+ I G EVT R K L
Sbjct: 210 LLERLKEGQEAREK--------LVERAMARLKEALEKDELLQAQ-IQGFEVT--GRPKHL 258
Query: 422 YSIFSKMRRKDVGIHKVYDARALRVVVGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPI 477
YSI+ KM R+ + ++YD A+RV++ K + T ++ Q CY +L +VH LW PI
Sbjct: 259 YSIWKKMEREGKALEQIYDLLAVRVILDPKPSATEEARSLREKQVCYHVLGLVHALWQPI 318
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK----- 532
G DYI PKP+GYQSLHT V +G LEVQIRT++MH+ AE+G+AAHWLYK
Sbjct: 319 PGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHKVAEYGIAAHWLYKEGLTD 378
Query: 533 --ETGNKLQSISSMDESDIEASSS 554
E ++ + S+ E E SSS
Sbjct: 379 PEEVKRRVSWLKSIQEWQQEFSSS 402
>gi|319776735|ref|YP_004139223.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
F3047]
gi|317451326|emb|CBY87564.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
F3047]
Length = 704
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKGRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|15827167|ref|NP_301430.1| GTP pyrophosphokinase [Mycobacterium leprae TN]
gi|221229645|ref|YP_002503061.1| GTP pyrophosphokinase [Mycobacterium leprae Br4923]
gi|2498842|sp|Q49640.1|RELA_MYCLE RecName: Full=Probable GTP pyrophosphokinase; AltName:
Full=(p)ppGpp synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|466814|gb|AAA17089.1| spoT [Mycobacterium leprae]
gi|3136012|emb|CAA19084.1| GTP pyrophosphokinase [Mycobacterium leprae]
gi|13092715|emb|CAC29999.1| putative GTP pyrophosphokinase [Mycobacterium leprae]
gi|219932752|emb|CAR70584.1| putative GTP pyrophosphokinase [Mycobacterium leprae Br4923]
Length = 787
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N VQ+A A + H Q R++GDPY+TH + ILA L + T+VA
Sbjct: 72 YPKANLSIVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAEL-----GMDITTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFGDEV LV GV++L + LG E
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV---------------VLGSAAEG 171
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 172 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 232 SVKWELEDLSFAILH 246
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+IST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IISTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
>gi|160898297|ref|YP_001563879.1| (p)ppGpp synthetase I SpoT/RelA [Delftia acidovorans SPH-1]
gi|160363881|gb|ABX35494.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia acidovorans SPH-1]
Length = 749
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 530 LYKETGNK 537
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 171 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--EANDLRVMLLGMVDDP 228
I + FG+ A L ++L + Q + R + L E + ++R MLLG D
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQ---QARGAELGGQYLDDEATQTENVRKMLLGFSRDL 163
Query: 229 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
RVVL++LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L
Sbjct: 164 RVVLLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFL 223
Query: 289 Q 289
+
Sbjct: 224 E 224
>gi|121605432|ref|YP_982761.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas naphthalenivorans CJ2]
gi|120594401|gb|ABM37840.1| (p)ppGpp synthetase I, SpoT/RelA [Polaromonas naphthalenivorans
CJ2]
Length = 756
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI KMR K +G +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADVKG---------CYAALG 302
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + P++GEFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AE+G+AAH
Sbjct: 303 FVHSCFSPVNGEFDDYIAKPKPNGYQSLHTVVRDEGGRAMEIQIRTQAMHDHAENGVAAH 362
Query: 529 WLYKETGNK-LQSISSMDESD 548
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYAGVSASSEYD 383
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H ++ +L G AV ++H +C
Sbjct: 38 RARAFAEPLIASEVMDTGENILAHA---DAVVGILKTIGGSEAVQAATY-LVH-----SC 88
Query: 166 ESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE----EANDL 217
+ L I + FG A L ++L Y+ + R V+ + H+ + ++
Sbjct: 89 QHLNKPQDVIAKAFGPSYAALAVETTKLIYLQRQTR-----AVDAKSQLHDDPAAQTENV 143
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVV+++LA RL +R A A RA+A E+L ++ LA+RLG+W +K
Sbjct: 144 RRMLLAFSRDLRVVMLRLASRLQTLRYYAASRQAAPRALAHESLHVFAPLANRLGIWQIK 203
Query: 278 AELEDLCFAVLQ 289
E+EDL F L+
Sbjct: 204 WEMEDLAFRFLE 215
>gi|291549196|emb|CBL25458.1| (p)ppGpp synthetase, RelA/SpoT family [Ruminococcus torques L2-14]
Length = 773
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 113/186 (60%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH QFRK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 60 IEKAYQIGKEAHKNQFRKSGEPYIIHPLWVAIILADL-----EMDKETIVAGMLHDVVED 114
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L I EFG+EVA LV GV++L ++N +Q L +A +LR M L
Sbjct: 115 TTMTLDEISAEFGEEVALLVDGVTKLG----------QLNYSQDKL-EAQAENLRKMFLA 163
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ + PAK + ++ET+ I+ +A RLG+ +K EL+DL
Sbjct: 164 MAKDIRVIIVKLADRLHNMRTMEFMTPAKQKEKSRETMDIYAPIAQRLGISKIKTELDDL 223
Query: 284 CFAVLQ 289
Q
Sbjct: 224 SLKYYQ 229
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 267 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 317
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 318 IHEMYTPIPGRFKDYIAMPKANMYQSLHTTLIGPSGQPFEIQIRTEEMHKTAEYGIAAHW 377
Query: 530 LYKETG 535
YKETG
Sbjct: 378 KYKETG 383
>gi|283138927|gb|ADB12530.1| putative GTP pyrophosphokinase RelA [uncultured bacterium 9F08]
Length = 736
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 14/187 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++ A+ A +AH Q R +G+PYLTH + I+A L + +++ A ILHDVV+D
Sbjct: 38 IRTALEIADKAHVEQLRASGEPYLTHAMAVADIVAGL-----RLDHESIAAAILHDVVED 92
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + E+ G VA LV GV+++SYI +N G E+ A LR +L
Sbjct: 93 TGITLEQVAEQCGQAVAHLVDGVTKMSYIGDY-------QLNGAQQGKEQIKAESLRKLL 145
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M +D RVV+IKLADRLHNMRT+ LP K R +A+ET+ I+ LA+RLG+W +K ELE
Sbjct: 146 LAMAEDVRVVMIKLADRLHNMRTLKHLPEEKQRRIARETMDIYAPLANRLGIWQIKWELE 205
Query: 282 DLCFAVL 288
DL F L
Sbjct: 206 DLSFRYL 212
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K L+SI+ KM+ K + H +YD RA+RV+V ++ CY +L
Sbjct: 250 GVKADIKGRPKHLFSIWKKMKNKGLSFHDLYDVRAVRVLVD---------SVADCYHVLG 300
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI PK + YQS+HTAV GP G LEVQIRT +M ++AE G+AAH
Sbjct: 301 VVHSLWPHIPKEFDDYIATPKENNYQSIHTAVVGPGGKTLEVQIRTWEMDKHAELGVAAH 360
Query: 529 WLYKETG 535
W YKE G
Sbjct: 361 WRYKEGG 367
>gi|419802374|ref|ZP_14327561.1| RelA/SpoT family protein [Haemophilus parainfluenzae HK262]
gi|385190236|gb|EIF37684.1| RelA/SpoT family protein [Haemophilus parainfluenzae HK262]
Length = 706
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A + +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAEMHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
++A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 IMAALLHDVIEDTPYTESQLKDEFGASVAEIVEGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGALCPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFEAMHPR 193
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LY I+ KMR KD H + D A RV+V ++ CY L
Sbjct: 228 GIPSRIWGREKHLYKIYQKMRMKDQKFHSIMDIYAFRVIVN---------SVDDCYRGLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G+ DYI P+ +GYQ+L T++ GP G +EV ++T++M + AE G+ AH
Sbjct: 279 QMHSLYKPRPGKVKDYIAVPRANGYQALQTSMIGPHGVPVEVHLQTEEMEQVAEMGITAH 338
Query: 529 WLYKETG 535
W+YKE G
Sbjct: 339 WVYKEGG 345
>gi|68250340|ref|YP_249452.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus influenzae 86-028NP]
gi|68058539|gb|AAX88792.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
86-028NP]
Length = 704
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTENQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRILGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|343517759|ref|ZP_08754755.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Haemophilus pittmaniae HK 85]
gi|343394610|gb|EGV07157.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Haemophilus pittmaniae HK 85]
Length = 706
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A + +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAEMHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
++A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 IMAALLHDVIEDTPYTESQLKDEFGASVAEIVEGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFEAMHPR 193
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V ++ CY L +H L+ P
Sbjct: 236 REKHLYKIYQKMRTKDQKFHSIMDIYAFRVIVN---------SVDDCYRGLGQMHSLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G+ DYI P+ +GYQ+L T++ GP G +EV ++T++M + AE G+ AHW+YKE G
Sbjct: 287 RPGKVKDYIAVPRANGYQALQTSMIGPHGVPVEVHLQTEEMEQVAEMGITAHWVYKEGG 345
>gi|319898190|ref|YP_004136387.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
F3031]
gi|317433696|emb|CBY82084.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
F3031]
Length = 704
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKGRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T+ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSTIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|407694008|ref|YP_006818796.1| Guanosine 3,5-bis-pyrophosphate (PpGpp) synthetase, RelA/SpoT
protein [Alcanivorax dieselolei B5]
gi|407251346|gb|AFT68453.1| Guanosine 3,5-bis-pyrophosphate (PpGpp) synthetase, RelA/SpoT
protein [Alcanivorax dieselolei B5]
Length = 701
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 21/200 (10%)
Query: 99 FNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
DEQ+ +A FA+ AH GQ+R+TGDPY+TH + IL + +++A
Sbjct: 15 LTDEQIAPVVRAYYFAETAHEGQYRRTGDPYITHPLAVANILTDMHMDHA-----SLMAA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDV++D S + EF +EVA+LV GVS+++ I + ++A
Sbjct: 70 MLHDVIEDTGVSKEQLATEFSEEVAELVDGVSKITQIKF------------ESKAEQQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M+L M D RVVL+KLADRLHNMRT++ + P K R +A ETL I+ +A RLG++
Sbjct: 118 NLRKMILAMTRDIRVVLVKLADRLHNMRTLHVMNPDKRRRIATETLEIYAPIAFRLGMYN 177
Query: 276 LKAELEDLCF-AVLQMRADL 294
++ E EDL F A+ MRA L
Sbjct: 178 MRVEYEDLAFHAIHPMRARL 197
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K LYSI++KM+ + ++ D R++V D+ + CY +L
Sbjct: 228 GIEARVLGREKHLYSIYNKMKEQHKPFSEIMDVFGFRIIV-DR--------VDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH +IPI G F DY+ PK +GYQSLHT ++ G LE+QIRT++M A +G+AAH
Sbjct: 279 AVHNYFIPIPGRFKDYVAIPKANGYQSLHTTLKAHSGIPLEIQIRTEEMEAMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|78044718|ref|YP_361036.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996833|gb|ABB15732.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
Length = 716
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 17/190 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++E ++KA FA AH GQ R +G+ Y+TH + ILA L +T+ AG+LH
Sbjct: 18 MDEELIKKAYNFAAEAHAGQKRASGEDYITHPLAVAFILAGLQMDD-----ETIAAGLLH 72
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D ++ I EFG+EVA LV GV++LS RI ++ +LR
Sbjct: 73 DVVEDTAYTIEDIAREFGEEVANLVDGVTKLS----------RIEFKNKE--EQQVENLR 120
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M L M D RV+LIKLADRLHNMRT+ P K + +A+ETL I+ LA RLG++ +K
Sbjct: 121 KMFLAMAKDIRVILIKLADRLHNMRTLKYHNPEKQKEIARETLEIFAPLAHRLGIYRIKW 180
Query: 279 ELEDLCFAVL 288
ELEDL F L
Sbjct: 181 ELEDLAFRYL 190
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ + R K LYSIF KMR + +VYD A+RV+V +++ CY++L
Sbjct: 228 NIKAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIV---------ESVRDCYTVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H +WIP+ G F DYI PK + YQSLHT V GP G LE+QIRT +MH AE+G+AAH
Sbjct: 279 IIHTMWIPVPGRFKDYIAMPKSNMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAH 338
Query: 529 WLYKETG 535
W YKE G
Sbjct: 339 WRYKEGG 345
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 786
+ + K+ LR +L W+ +L+ ++ K + DSV V P G+++
Sbjct: 348 DKKFDEKLSWLRQILEWQRELKDAREFMETL---KVDIFSDSV------FVFTPKGDVVE 398
Query: 787 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
L +GS D A + VG VNG+LV + +LK+GDIVE+
Sbjct: 399 LPAGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEI 444
>gi|329123154|ref|ZP_08251724.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus aegyptius ATCC 11116]
gi|327471709|gb|EGF17151.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus aegyptius ATCC 11116]
Length = 704
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKGRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|307246755|ref|ZP_07528823.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255739|ref|ZP_07537542.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307260191|ref|ZP_07541900.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852330|gb|EFM84567.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861299|gb|EFM93290.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306865736|gb|EFM97615.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 568
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLSALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|237748987|ref|ZP_04579467.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
gi|229380349|gb|EEO30440.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
Length = 747
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +YSI++KMR K + ++YD RA+R++V D I+ C+++LDIV+RLW P
Sbjct: 255 RPKHIYSIYNKMRGKSLDFSQMYDLRAVRIIVDD---------IKSCFTVLDIVNRLWTP 305
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE+G+AAHW YKETG
Sbjct: 306 ILEEFDDYISRPKPNGYQSLHTVVVAENGQPFEVQIRTQEMHRLAEYGVAAHWRYKETGG 365
Query: 537 KLQSISSMDE 546
DE
Sbjct: 366 STFVAQQYDE 375
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V +A FAK ++ ++G+ + + G ILA L S R+ AG+L +
Sbjct: 24 KKVMEAYVFAKESYGDIHIESGELAIDYSKAIGLILAELNTDSQTRS-----AGLLAVLP 78
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGTLGHEEANDLRV 219
E IE FG EV+ LV V +L + L I N + +A LR
Sbjct: 79 RYNPEIASQIESRFGVEVSNLVDSVIKLFKLRDLTGNLEEIAQGKNAAQIRKAQAETLRK 138
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPP--AKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D RVV+I+LA R+ ++R + + + R A+ETL I+ LA+RLG+W +K
Sbjct: 139 MLLAMAADMRVVMIRLAARMASLRYLAKIKKDTSDRRQYAKETLEIYAPLANRLGIWQVK 198
Query: 278 AELEDLCFAVLQ 289
ELEDL F ++
Sbjct: 199 WELEDLSFRFIE 210
>gi|257055543|ref|YP_003133375.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora viridis
DSM 43017]
gi|256585415|gb|ACU96548.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora viridis
DSM 43017]
Length = 812
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 113/186 (60%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H GQ RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 110 LQRAYDTAEELHRGQHRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 164
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + E+FG++VA+LV GV++L V GT EA +R M++
Sbjct: 165 TGYSVEQLTEDFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 210
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 211 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMSTVKWELEDL 270
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 271 AFAILQ 276
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V D ++ CY+ + +VH L
Sbjct: 318 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VRDCYAAMGVVHAL 368
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 369 WQPMPGRFKDYIAQPRYGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 428
Query: 534 T 534
T
Sbjct: 429 T 429
>gi|413962948|ref|ZP_11402175.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
gi|413928780|gb|EKS68068.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
Length = 740
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+KEL T++I + +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--ETAHI---KADVSGRPKHIYSIWKKMRGKQLDFAELNDVRAFRVIVGD----- 279
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 516 KMHEYAEHGLAAHWLYKETGNK 537
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGAR 357
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 86/187 (45%), Gaps = 10/187 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ A+AF + TG+ H T RI+ L S A + H +DD
Sbjct: 16 IDDALAFVREHAKDARVSTGELLADHAAGTARIMQTLNVDSHAVAAAALFVLAPH--LDD 73
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LR 218
+ I E FG EV +LV V +L + + R + + T + A LR
Sbjct: 74 PEKV---IAERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARRAQVEALR 130
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
MLL D RVVLI+LA R+ +R A + V +ETL I+ LA+RLG+W LK
Sbjct: 131 KMLLAFAQDIRVVLIRLASRVQTLRYYAAHKIEPSPDVPRETLEIYAPLANRLGIWQLKW 190
Query: 279 ELEDLCF 285
ELEDL F
Sbjct: 191 ELEDLSF 197
>gi|406991168|gb|EKE10717.1| hypothetical protein ACD_15C00208G0006 [uncultured bacterium]
Length = 498
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 16/185 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++ A A AK AHHGQ RK+G+ Y+ H ++T A+ I G R+ T+ AG+LHDV +D
Sbjct: 27 IRNAYAVAKEAHHGQKRKSGEEYIQHALYT----ALNIAKMGMRS-KTISAGLLHDVPED 81
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE+FG E+A +V GV++L I LR GT +LR M
Sbjct: 82 TSVTLEEVEEKFGSEIAFMVNGVTKLGKIR--LR---------GTKEELYLENLRKMFFA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RVV+IKLADR+HNM T+ ALPP K + ++ ET+ ++ +A+RLG+ +K +LEDL
Sbjct: 131 MASDIRVVIIKLADRMHNMETLSALPPDKQKRISLETMEVFAPIANRLGIGEIKGKLEDL 190
Query: 284 CFAVL 288
F L
Sbjct: 191 AFKYL 195
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K Y +F KM++ D+ I K+YD +R++V P + CY L IVH + P
Sbjct: 242 RTKHPYRLFQKMKKHDMNIDKIYDLIGIRIIV---------PDVSSCYETLGIVHNKYRP 292
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G DYI PKP+GYQS+HT + GP+G LEVQIRT +M + AE G+AAHW+Y E
Sbjct: 293 LVGRIKDYISLPKPNGYQSIHTTIFGPEGKILEVQIRTGQMDDEAEFGIAAHWVYSEKEK 352
Query: 537 K 537
K
Sbjct: 353 K 353
>gi|366085882|ref|ZP_09452367.1| GTP pyrophosphokinase [Lactobacillus zeae KCTC 3804]
Length = 741
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|377820441|ref|YP_004976812.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. YI23]
gi|357935276|gb|AET88835.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia sp. YI23]
Length = 740
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 14/142 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+KEL T++I +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--DTAHI---RADVSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD----- 279
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 516 KMHEYAEHGLAAHWLYKETGNK 537
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGTR 357
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 104 VQKAIAFAKRAHHGQFR-KTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ A+AF R H G R TG+ H + T RI+ L + A + H +D
Sbjct: 16 IDGALAFV-REHAGDARVSTGELLADHAVGTARIVQTLNVDAHAVAAAALFVLAPH--LD 72
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----L 217
D + I E FG EV +LV V +L + + R ++ + T + A L
Sbjct: 73 DPDKV---IAERFGPEVQRLVGDVRKLLRLGSVSSRATLADLPENTRDAQAARRAQVEAL 129
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVVLI+LA R+ ++R A + V +ETL I+ LA+RLG+W LK
Sbjct: 130 RKMLLAFAQDIRVVLIRLASRVQSLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLK 189
Query: 278 AELEDLCF 285
ELEDL F
Sbjct: 190 WELEDLSF 197
>gi|333394996|ref|ZP_08476815.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
gi|336392924|ref|ZP_08574323.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 110/194 (56%), Gaps = 20/194 (10%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V +KA+ FA H QFR++G+PY+ H I ILA L K TV +G
Sbjct: 20 MNDEHVAFVKKALDFATYVHKEQFRQSGEPYIVHPIQVAAILAEL-----KMDPATVASG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D +LG I+E FG +VA +V GV++LS I + + E A
Sbjct: 75 FLHDVVEDTNITLGDIQELFGHDVAVIVDGVTKLSKIKYVAHKD------------ELAE 122
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R M+L M D RVV++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 NHRKMILAMAKDLRVVMVKLADRLHNMRTLKHLRPEKQRRIANETLEIYAPLADRLGISQ 182
Query: 276 LKAELEDLCFAVLQ 289
K ELED L
Sbjct: 183 FKWELEDTALRYLN 196
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ + R K +YSI+ KMR K ++YD A+RV+V I+ CY++L
Sbjct: 233 NIKYEIYGRPKHIYSIYKKMRDKHKQFEEIYDLLAIRVIVD---------TIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGQPLEIQIRTEEMHQVAEYGVAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|392546687|ref|ZP_10293824.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
rubra ATCC 29570]
Length = 700
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 19/256 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA A+ AH GQ R +G+PY+TH + +ILA S K +T++A ++HDV+
Sbjct: 21 ELVQKAYVVAREAHEGQTRSSGEPYITHPVEVTQILA-----SMKLDHETLMAALMHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E FGD VA+LVAGVS+L ++ ++ +A + R M+
Sbjct: 76 EDTDFSQTDLAEIFGDTVAELVAGVSKLDKLDFKDKKEF------------QAENYRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGFLRPEKRRRIARETLEIFAPIANRLGIHDIKNELE 183
Query: 282 DLCFAVLQ-MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
DL FA L MR + R I+ I S A D S + ++H+ S+
Sbjct: 184 DLGFAALYPMRHRALKSEVAKARGNRKEVISNIQSEIESRLEEAGIDASVSGREKHLYSI 243
Query: 341 -KDLLEAVVPFDILSD 355
K +L + F+ + D
Sbjct: 244 YKKMLNKELLFNEVMD 259
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++S R K LYSI+ KM K++ ++V D A R+ V +I CY +L
Sbjct: 228 GIDASVSGREKHLYSIYKKMLNKELLFNEVMDIYAFRINVN---------SIDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+ H L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT M A+ G+AAH
Sbjct: 279 VAHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHDMDHMADKGVAAH 338
Query: 529 WLYKETGN 536
W+YK++G+
Sbjct: 339 WMYKKSGD 346
>gi|148825721|ref|YP_001290474.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittEE]
gi|229846916|ref|ZP_04467022.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
7P49H1]
gi|148715881|gb|ABQ98091.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittEE]
gi|229810000|gb|EEP45720.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
7P49H1]
Length = 704
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKGRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|444431948|ref|ZP_21227108.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia soli NBRC 108243]
gi|443887122|dbj|GAC68829.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia soli NBRC 108243]
Length = 811
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 95 YPKADTALLQQAYDVADERHTGQVRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 149
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E EFG EVA LV GV++L + LG EA
Sbjct: 150 LLHDTVEDTGYSLEQLESEFGSEVAHLVDGVTKLDKV---------------ALGSAAEA 194
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 195 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 254
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 255 TVKWELEDLSFAILH 269
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ ++ CY+ + +
Sbjct: 307 ISATVEGRPKHYWSIYQKMIVKGREFDDIHDLVGMRILCDQ---------VRDCYAAVGV 357
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 358 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTTDMHRTAEFGIAAHW 417
Query: 530 LYKETGNK 537
YKET N+
Sbjct: 418 RYKETRNR 425
>gi|257896966|ref|ZP_05676619.1| RelA/SpoT protein [Enterococcus faecium Com12]
gi|257833531|gb|EEV59952.1| RelA/SpoT protein [Enterococcus faecium Com12]
Length = 737
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|346991588|ref|ZP_08859660.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ruegeria sp. TW15]
Length = 710
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N E++++A F + H GQFR +G+PY +H + IL + +R D T++
Sbjct: 16 PKTNAERIERAYEFGLQMHEGQFRHSGEPYFSHPVAVAAIL------TEQRLDDATIITA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S G + E FGDEVAKLV GV++L+ N+ + ++A
Sbjct: 70 LLHDTIEDTKASYGKVSELFGDEVAKLVDGVTKLT------------NLQLSSRETKQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 118 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPEKQVQKARETMDIYAPLAGRMGMQW 177
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 178 MREELEDLAFRVL----------NPEGRQSIIRRFITL 205
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ KD G ++ D R++ G + + CY L
Sbjct: 228 GIEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIITGSE---------EDCYRTLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 279 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAETGVAAH 338
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDT-DDH 562
W Y++ G + ++ ++D + A+ + D+ DDH
Sbjct: 339 WSYRD-GVRSENPFAVDPAKWIANLTEQFDSEDDH 372
>gi|126667182|ref|ZP_01738156.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
gi|126628338|gb|EAZ98961.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
Length = 743
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 19/181 (10%)
Query: 361 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 419
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGST-----GIKGDVSGRVK 266
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGIVHGLWRHIPN 317
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 539
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTHDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 540 S 540
S
Sbjct: 378 S 378
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
Query: 151 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 210
++ A +L+ V + +L ++ +EFGDEVA L++GV +++ I+ + H + N LG
Sbjct: 84 SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLISGVLQMAAISSI---HHPLKGN--VLG 138
Query: 211 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
E +++R ML+ MVDD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDALPEKRMRVAREVSDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRVGYSRRITTIVSS 316
RLG+ +K ELEDL F L A +A + + NR Y +R+ + S
Sbjct: 199 HRLGIGYIKWELEDLSFRYLHETAYKKIAKLLDEKRLNRESYIKRVVAALES 250
>gi|257899574|ref|ZP_05679227.1| RelA/SpoT protein [Enterococcus faecium Com15]
gi|257837486|gb|EEV62560.1| RelA/SpoT protein [Enterococcus faecium Com15]
Length = 737
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|297564854|ref|YP_003683826.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus silvanus DSM 9946]
gi|296849303|gb|ADH62318.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus silvanus DSM 9946]
Length = 738
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 129/229 (56%), Gaps = 22/229 (9%)
Query: 68 LSTKVDF----LWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTG 123
+S VD LW +LE + + P +V+ A+ FA AH GQ RK+G
Sbjct: 1 MSQAVDISPTQLWARLEPK----------IAYLPPAEQGRVRTALEFAFAAHQGQLRKSG 50
Query: 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLV 183
+PY+ H + ILA L + +T++AG+LHD V+D IEE FG V ++V
Sbjct: 51 EPYIVHPVAVAEILAELGLDA-----ETLMAGLLHDTVEDTEVKPEDIEERFGTAVRRIV 105
Query: 184 AGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMR 243
G +++S + +L + + + +L + A DLR M + M +D R++++KLADRLHN+R
Sbjct: 106 EGETKVSKLYKLAHQ---VAEERPSLEEQRAEDLRQMFIAMAEDVRIIIVKLADRLHNLR 162
Query: 244 TIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRA 292
T+ +PP K +A+ETL I+ LA RLG+ +K ELEDL F L+ A
Sbjct: 163 TLEFMPPHKQTRIARETLEIYAPLAHRLGIGQIKWELEDLSFRYLEPEA 211
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 14/175 (8%)
Query: 391 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
A E L+++ ++ S I G EVT R K LYSI+ KM+R+ + ++YD ALRV++
Sbjct: 236 ALEAVLQRDSVLGAS-IQGYEVT--GRTKHLYSIWKKMQREGRALEQIYDLLALRVILEP 292
Query: 451 K-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 506
+ L A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V G
Sbjct: 293 RPTPNLEEKAMREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAGSGL 352
Query: 507 ALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 554
LEVQIRT++MH+ AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 353 PLEVQIRTREMHQIAEYGIAAHWLYKQGLTDPEEIKRRVDWLRSIQEWQAEFSSS 407
>gi|408356412|ref|YP_006844943.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
gi|407727183|dbj|BAM47181.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
Length = 729
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 18/201 (8%)
Query: 89 DGVDVTGYPIFND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
D +++ Y +D + +++A +A +AH Q+R++G+PY+ H + ILA L G
Sbjct: 11 DVIEIASYLSDDDIKLIRRAFEYAYKAHENQYRRSGEPYIIHPVQVASILAKL----GLD 66
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 207
A +T+ G LHDVV+D ++L IEE F +E+A LV GV++L +
Sbjct: 67 A-ETIAGGFLHDVVEDTDKTLKDIEEAFNEEIAMLVDGVTKLG------------KIQYK 113
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
+ ++A + R M + M D RV+LIKLADR+HNMRT+ LPP K R +A ETL I+ L
Sbjct: 114 SQEAQQAENHRKMFIAMSKDIRVILIKLADRVHNMRTLKYLPPEKQRRIANETLEIFAPL 173
Query: 268 ASRLGLWALKAELEDLCFAVL 288
A RLG+ A+K ELED+ L
Sbjct: 174 AHRLGISAIKWELEDVALRYL 194
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
S R K +YSI+ KM ++ ++YD A+R++V +I+ CY++L I+H
Sbjct: 237 FSGRPKHIYSIYRKMMLQNKQFDEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 287
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G+ LEVQIRT++MHE AE+G+AAHW YKE
Sbjct: 288 WKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGAPLEVQIRTKEMHEIAEYGIAAHWAYKE 347
>gi|293571366|ref|ZP_06682397.1| GTP pyrophosphokinase [Enterococcus faecium E980]
gi|431738631|ref|ZP_19527574.1| RelA/SpoT family protein [Enterococcus faecium E1972]
gi|291608582|gb|EFF37873.1| GTP pyrophosphokinase [Enterococcus faecium E980]
gi|430597359|gb|ELB35162.1| RelA/SpoT family protein [Enterococcus faecium E1972]
Length = 786
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 177
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 178 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 237
Query: 282 DLCFAVLQ 289
D L
Sbjct: 238 DTALRYLN 245
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 282 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 332
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 333 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 392
Query: 529 WLYKE 533
W YKE
Sbjct: 393 WAYKE 397
>gi|445497639|ref|ZP_21464494.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
gi|444787634|gb|ELX09182.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
Length = 752
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+SKM+ K++ +YD RA RV+V D ++ CY++L
Sbjct: 253 GIQAEVFGRPKHIYSIWSKMKGKELDFTDLYDVRAFRVIVAD---------VKTCYTVLG 303
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRTQ+MH +AE+G+AAH
Sbjct: 304 VVHNIWTPIPKEFDDYISRPKSNGYQSLHTVVTAEDGRPLEVQIRTQEMHGFAEYGVAAH 363
Query: 529 WLYKETGNKLQSISSMDE 546
W YKE G + DE
Sbjct: 364 WRYKEAGGSNFAGQKYDE 381
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A+ FA A+ + +G P + + LA S + V+T +AG++ ++
Sbjct: 30 ALDFASEAYGDKVCVSGQPAIDFAVGVAGTLA-----SMRTDVETRIAGLMFELTLLDTA 84
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH---------RRINVNQGTLGHEEANDL 217
IE FG EV++LVAGV +L + +L + R N Q + E L
Sbjct: 85 QAPIIEPRFGHEVSELVAGVRQLIRLRELTQTQGQGQPGAVARGRNAAQMAVAQVET--L 142
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLIWCSLASRLGLWA 275
R MLL M D RVVL++LA + +R L A +ETL ++ LA+RLG+W
Sbjct: 143 RKMLLAMASDMRVVLVRLASCVTTLRYFADIKLFNDMTCAYGRETLDLYAPLANRLGIWQ 202
Query: 276 LKAELEDLCFAVLQMRA 292
LK ELEDL F ++ A
Sbjct: 203 LKWELEDLSFRFIEPEA 219
>gi|160913537|ref|ZP_02076228.1| hypothetical protein EUBDOL_00013 [Eubacterium dolichum DSM 3991]
gi|158434089|gb|EDP12378.1| RelA/SpoT family protein [Eubacterium dolichum DSM 3991]
Length = 733
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A FA++ H GQFRK+G+PY+ H I G ILA+L +G + T+ AG LHD
Sbjct: 25 NIDLITRAYLFAEKNHCGQFRKSGEPYIIHAIQVGYILALL--RTGPK---TIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
VV+D S + E FG+EVA LV V+++S N+ A++ R
Sbjct: 80 VVEDCNVSKQEVSELFGEEVATLVESVTKIS------------NLKFQDEKEYLASNHRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+ + M D RV+L+KLADRLHNMRT+ +P AK + +A ETL ++ +A RLG+ +K E
Sbjct: 128 IFIAMAKDVRVILVKLADRLHNMRTLQYMPSAKQQKIANETLEVYAPIAHRLGISDIKNE 187
Query: 280 LEDLCFAVLQ 289
LEDL F L+
Sbjct: 188 LEDLSFQYLK 197
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R+V + CY +L +H + P
Sbjct: 242 RSKHLYSIYKKMVTKNKRFEEILDLLAIRIVTDTDSA---------CYEILGYIHAKYRP 292
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 534
I G F DYI PK + YQSLHT + DG+ EVQIRT+KM E AE G+AAHW YKE+
Sbjct: 293 IPGRFKDYIAMPKVNMYQSLHTTIVADDGNIFEVQIRTEKMDEIAEQGIAAHWRYKES 350
>gi|227552630|ref|ZP_03982679.1| GTP diphosphokinase [Enterococcus faecium TX1330]
gi|257888143|ref|ZP_05667796.1| GTP pyrophosphokinase [Enterococcus faecium 1,141,733]
gi|293378678|ref|ZP_06624837.1| GTP diphosphokinase [Enterococcus faecium PC4.1]
gi|424764268|ref|ZP_18191711.1| GTP diphosphokinase [Enterococcus faecium TX1337RF]
gi|431040301|ref|ZP_19492808.1| RelA/SpoT family protein [Enterococcus faecium E1590]
gi|431750927|ref|ZP_19539621.1| RelA/SpoT family protein [Enterococcus faecium E2620]
gi|431758269|ref|ZP_19546897.1| RelA/SpoT family protein [Enterococcus faecium E3083]
gi|431763734|ref|ZP_19552283.1| RelA/SpoT family protein [Enterococcus faecium E3548]
gi|227178256|gb|EEI59228.1| GTP diphosphokinase [Enterococcus faecium TX1330]
gi|257824197|gb|EEV51129.1| GTP pyrophosphokinase [Enterococcus faecium 1,141,733]
gi|292642718|gb|EFF60869.1| GTP diphosphokinase [Enterococcus faecium PC4.1]
gi|402419837|gb|EJV52110.1| GTP diphosphokinase [Enterococcus faecium TX1337RF]
gi|430562153|gb|ELB01406.1| RelA/SpoT family protein [Enterococcus faecium E1590]
gi|430616185|gb|ELB53109.1| RelA/SpoT family protein [Enterococcus faecium E2620]
gi|430617932|gb|ELB54796.1| RelA/SpoT family protein [Enterococcus faecium E3083]
gi|430622107|gb|ELB58848.1| RelA/SpoT family protein [Enterococcus faecium E3548]
Length = 786
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 177
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 178 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 237
Query: 282 DLCFAVLQ 289
D L
Sbjct: 238 DTALRYLN 245
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 282 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 332
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 333 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 392
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 393 WAYKEGKNE 401
>gi|323455208|gb|EGB11077.1| hypothetical protein AURANDRAFT_52662, partial [Aureococcus
anophagefferens]
Length = 467
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 197/453 (43%), Gaps = 93/453 (20%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A+ A AH GQ R++G+P++TH + +ILA DTVV+G+LHD V+D
Sbjct: 23 VRYAVEVAFLAHRGQKRRSGEPFVTHPVEVAKILARTHMDR-----DTVVSGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ G +E FG +V ++V G +++S + ++ R
Sbjct: 78 TDLTFGEVEAMFGVDVRRIVEGETKVSKLPKMAR-------------------------- 111
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D P K +++ NMR+++ A+A++ ++ LA RL + L
Sbjct: 112 --DLPAADAEK--EQVENMRSMFI-------AMAEDWRIVVVKLADRLH------NMRTL 154
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
F PR R SR I + PL R + K
Sbjct: 155 RFM------------PPRKRAKISRETLEIFA--PLAHRLG------------MWQYKTE 188
Query: 344 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIS 403
LE F+ L F + A EA + + +A +L C LE +L+
Sbjct: 189 LEET-SFEHL--------FPAEYAALDEAIARKRTTVEA-----ALEECRGKLET-MLMD 233
Query: 404 TSYIPGM--EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
I G V++ R KS YS + KM+R+ GI ++ D ALRVV+ +
Sbjct: 234 DVMIKGRMRTVSIEGRTKSCYSTWKKMQRQQCGIERIDDLVALRVVLKAERPEAEADT-S 292
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY +L VH W P+ DYI +PKP+GY+SLHT V LEVQIRT MH A
Sbjct: 293 LCYHVLGKVHSTWTPLPRTLKDYISSPKPNGYRSLHTTVL-VGSQPLEVQIRTDDMHRVA 351
Query: 522 EHGLAAHWLYKETGNKLQSISSMDESDIEASSS 554
E G AAHW YK+T L + + E + SS
Sbjct: 352 ELGAAAHWAYKDTDASLPWLQIIREWHAQVDSS 384
>gi|199599338|ref|ZP_03212736.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus rhamnosus HN001]
gi|258508564|ref|YP_003171315.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|385828226|ref|YP_005865998.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|385835394|ref|YP_005873168.1| relA/SpoT family protein [Lactobacillus rhamnosus ATCC 8530]
gi|421768716|ref|ZP_16205426.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP2]
gi|421771132|ref|ZP_16207793.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP3]
gi|199589777|gb|EDY97885.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus rhamnosus HN001]
gi|257148491|emb|CAR87464.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|259649871|dbj|BAI42033.1| GTP pyrophosphokinase [Lactobacillus rhamnosus GG]
gi|355394885|gb|AER64315.1| relA/SpoT family protein [Lactobacillus rhamnosus ATCC 8530]
gi|411185565|gb|EKS52692.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP2]
gi|411186567|gb|EKS53691.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Lactobacillus
rhamnosus LRHMDP3]
Length = 741
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|425054812|ref|ZP_18458314.1| GTP diphosphokinase [Enterococcus faecium 505]
gi|430840370|ref|ZP_19458295.1| RelA/SpoT family protein [Enterococcus faecium E1007]
gi|431064204|ref|ZP_19493551.1| RelA/SpoT family protein [Enterococcus faecium E1604]
gi|431124683|ref|ZP_19498679.1| RelA/SpoT family protein [Enterococcus faecium E1613]
gi|431593365|ref|ZP_19521694.1| RelA/SpoT family protein [Enterococcus faecium E1861]
gi|431741443|ref|ZP_19530348.1| RelA/SpoT family protein [Enterococcus faecium E2039]
gi|403035121|gb|EJY46526.1| GTP diphosphokinase [Enterococcus faecium 505]
gi|430495135|gb|ELA71342.1| RelA/SpoT family protein [Enterococcus faecium E1007]
gi|430566968|gb|ELB06056.1| RelA/SpoT family protein [Enterococcus faecium E1613]
gi|430568845|gb|ELB07875.1| RelA/SpoT family protein [Enterococcus faecium E1604]
gi|430591242|gb|ELB29280.1| RelA/SpoT family protein [Enterococcus faecium E1861]
gi|430601621|gb|ELB39215.1| RelA/SpoT family protein [Enterococcus faecium E2039]
Length = 786
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 132 TEVTLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 177
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 178 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 237
Query: 282 DLCFAVLQ 289
D L
Sbjct: 238 DTALRYLN 245
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 282 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 332
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 333 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 392
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 393 WAYKEGKNE 401
>gi|417840986|ref|ZP_12487094.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M19501]
gi|341950797|gb|EGT77384.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M19501]
Length = 704
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|254515851|ref|ZP_05127911.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase [gamma
proteobacterium NOR5-3]
gi|219675573|gb|EED31939.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase [gamma
proteobacterium NOR5-3]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 124/204 (60%), Gaps = 20/204 (9%)
Query: 88 VDGVDVTGYPIFNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+D +D +++Q V++A FA++AH GQ R++G+PY+TH + ILA +
Sbjct: 4 IDSLDANLRSYLDEQQSTLVRRAYYFAEQAHFGQQRRSGEPYVTHPLAVAGILAEMHMDH 63
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+++A +LHDV++D G+IE +FG+ VA+LV GVS+L+ +
Sbjct: 64 -----QSLMAAMLHDVIEDTGIDKGAIEGQFGEAVAELVDGVSKLT------------QI 106
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
TL ++A + + M L M D RV+L+KLADRLHNMRT+ LP AKAR +A+ETL I+
Sbjct: 107 EFDTLEEKQAENFQKMALAMARDIRVILVKLADRLHNMRTLGVLPTAKARRIAKETLDIY 166
Query: 265 CSLASRLGLWALKAELEDLCFAVL 288
+A RLG+ +++ E EDL F L
Sbjct: 167 APIAMRLGMNSVRMEFEDLGFTAL 190
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G E T+ R K LYSI+ KMR K ++ D A RVVV ++ CY +L
Sbjct: 228 GHEATVIGREKHLYSIYKKMRAKKKSFSEIMDIYAFRVVVD---------SVDSCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P+ GEF DYI PK +GYQSLHT G G +E+QIRT++M + A +G+AAH
Sbjct: 279 CIHSLYKPVPGEFKDYIAIPKANGYQSLHTVTMGMHGVPIEIQIRTREMEDMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|333909817|ref|YP_004483403.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479823|gb|AEF56484.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 705
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 125/196 (63%), Gaps = 24/196 (12%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A +A++AH GQ RK+G+PY+TH + +IL+ L + D + A +LHDV++
Sbjct: 22 KVKRAYYYAEQAHDGQKRKSGEPYVTHPLAVAKILSEL-----RMDCDGLSAALLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHEEANDLRV 219
D S ++ +FG+EVA LV GVS+L+++ NQL ++A++ +
Sbjct: 77 DTGISREALAAQFGEEVASLVDGVSKLTHLEFNNQL---------------EKQAHNFQK 121
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M + M DD RV+L+KLADRLHNMRT+ A+P K R +A+ETL I+ +A+RLG++ ++ +
Sbjct: 122 MAMAMADDIRVILVKLADRLHNMRTLDAMPAHKKRRIAKETLDIYAPIANRLGMYNVRVD 181
Query: 280 LEDLCF-AVLQMRADL 294
LE L F A MRA +
Sbjct: 182 LESLAFQAYYPMRAQM 197
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 16/167 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E +S R K +YSI+ KM +K + ++ D +R+V D++ + CY +L +
Sbjct: 230 IEAKISVREKHIYSIYQKMDKKRRSLDEIMDVMGVRIVT-DRHDS--------CYRILGV 280
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI+G F DYI PK +GYQSLHT V G +G +E+QIRT++M A +G+AAHW
Sbjct: 281 IHALFKPIEGRFKDYIAVPKSNGYQSLHTTVLGTNGIPMEIQIRTEEMDLVANNGIAAHW 340
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD------TDLF 570
YK G + S+ D + S L NP++ +DLF
Sbjct: 341 AYKVNGTS-SAPSNHDRATKWVKSLLEIQQKTRNPVEFVDNVKSDLF 386
>gi|312139501|ref|YP_004006837.1| gtp diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-diphosphatase [Rhodococcus equi 103S]
gi|325672609|ref|ZP_08152305.1| GTP diphosphokinase [Rhodococcus equi ATCC 33707]
gi|311888840|emb|CBH48152.1| GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-diphosphatase [Rhodococcus equi 103S]
gi|325556486|gb|EGD26152.1| GTP diphosphokinase [Rhodococcus equi ATCC 33707]
Length = 778
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A++ H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 67 YPKADFSLLQRAYDVAEQRHATQFRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 121
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + EFGDEVA LV GV++L + LG E
Sbjct: 122 LLHDTVEDTGYSLEELTAEFGDEVAHLVDGVTKLDKV---------------VLGSAAEG 166
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 167 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 226
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 227 TVKWELEDLSFAILH 241
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 279 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 329
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE G+AAHW
Sbjct: 330 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTRDMHRTAEFGIAAHW 389
Query: 530 LYKET-GNKLQSISSMDE 546
YKET G I+ +D+
Sbjct: 390 RYKETKGKHSNDIAEVDD 407
>gi|229552374|ref|ZP_04441099.1| GTP diphosphokinase [Lactobacillus rhamnosus LMS2-1]
gi|229314276|gb|EEN80249.1| GTP diphosphokinase [Lactobacillus rhamnosus LMS2-1]
Length = 769
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 56 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 110
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 111 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 158
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 159 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 218
Query: 284 CFAVLQ 289
L
Sbjct: 219 SLRYLN 224
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 266 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 316
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 317 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 376
>gi|314938569|ref|ZP_07845853.1| GTP diphosphokinase [Enterococcus faecium TX0133a04]
gi|314952050|ref|ZP_07855073.1| GTP diphosphokinase [Enterococcus faecium TX0133A]
gi|314995190|ref|ZP_07860304.1| GTP diphosphokinase [Enterococcus faecium TX0133a01]
gi|313590599|gb|EFR69444.1| GTP diphosphokinase [Enterococcus faecium TX0133a01]
gi|313595840|gb|EFR74685.1| GTP diphosphokinase [Enterococcus faecium TX0133A]
gi|313642126|gb|EFS06706.1| GTP diphosphokinase [Enterococcus faecium TX0133a04]
Length = 737
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|385791570|ref|YP_005822693.1| GTP diphosphokinase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302325714|gb|ADL24915.1| GTP diphosphokinase [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 714
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 17/189 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P ++ ++KAIAF AH GQ+RK+G PY H +ILA L K+ TV+AG+
Sbjct: 22 PKLDEGILRKAIAFIADAHDGQYRKSGMPYTEHPYEVAKILADL-----KQDQATVLAGL 76
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D +L I E FG++ A +V V++++ V + + ++A+
Sbjct: 77 LHDVVEDTPHTLSEISELFGEDTAFMVDAVTKIT------------AVQEASKTAQKAST 124
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R ++ M DPRV++IK+ADR+HNMRT+ + P K + +AQETL I+ L R GL+ L
Sbjct: 125 YRKLITAMAKDPRVIMIKIADRIHNMRTMRYMKPEKRKIIAQETLDIYVPLTHRFGLYKL 184
Query: 277 KAELEDLCF 285
K ELEDL F
Sbjct: 185 KTELEDLSF 193
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K++YSI++KM + G ++D A+R++V I CY L
Sbjct: 235 FDCTIQGRTKNIYSIYNKMIARGCGFEDIFDIFAIRIIV---------ETIPECYLALGY 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ F DYI PKP+ YQS+HT V GP+ +EVQIRT+ M AE G AAHW
Sbjct: 286 VHNLWTPLQSRFKDYIATPKPNLYQSIHTTVIGPENKMVEVQIRTKDMDLTAEKGFAAHW 345
Query: 530 LYK-ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDL 569
YK ET ++ + ++ +D ++ S +S + + L DL
Sbjct: 346 AYKMETQHEGEELAWLDHM-VKLQSEISDSKEYLDFLKVDL 385
>gi|163856045|ref|YP_001630343.1| GTP pyrophosphokinase [Bordetella petrii DSM 12804]
gi|163259773|emb|CAP42074.1| GTP pyrophosphokinase [Bordetella petrii]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALRV+V D ++ CY+ L
Sbjct: 251 GIHAEVSGRPKHIYSIWNKMRLKGLEFSQMYDLRALRVIVDD---------VRDCYTALG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT+ MH++AE+G+AAH
Sbjct: 302 MVHDMWTPLPDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTRGMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESDIEAS 552
W YKE G K +++ E D + S
Sbjct: 362 WRYKEAGAKGGQVAASSEYDRQLS 385
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A+A+A GQ TG+P H RILA L R + A
Sbjct: 32 RIERAVAWATPQFAGQHTVTGEPLARHAAGAVRILAGLQTDVAVRIAALLAALPADLTQP 91
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
I EFG EVA+LV G L + + R + G ++ R MLL
Sbjct: 92 APPLRNDPIAAEFGAEVARLVQGARALLRLGLVARHASDSEADSG----DQKEMQRKMLL 147
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D R+VL++LA RL +R A A+ETL ++ LA+RLG+W +K E+ED
Sbjct: 148 AMAADLRIVLMRLASRLQTLRWHAESKAPCTPAFARETLDLYAPLANRLGIWQVKWEMED 207
Query: 283 LCFAVLQ 289
L F L+
Sbjct: 208 LAFRFLE 214
>gi|254456187|ref|ZP_05069616.1| RelA/SpoT family protein [Candidatus Pelagibacter sp. HTCC7211]
gi|207083189|gb|EDZ60615.1| RelA/SpoT family protein [Candidatus Pelagibacter sp. HTCC7211]
Length = 581
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 117/203 (57%), Gaps = 21/203 (10%)
Query: 93 VTGYPIF-NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V GY F N E++ KA FA +AH Q R +GDPY H I IL L S T
Sbjct: 11 VKGYNKFLNPERLDKAYNFAVKAHQNQKRASGDPYSVHPIEVANILTDLKLDSA-----T 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG- 210
+ G+LHD ++D + +I+ EFGDEVA+LV GV+++S V + T G
Sbjct: 66 ITTGLLHDTIEDTFATYDTIKTEFGDEVAELVDGVTKIS-------------VFENTAGA 112
Query: 211 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLAS 269
+ + + R ++L D RV+L+K+ADRLHNMRTI A+P K + +AQET+ I+ LA
Sbjct: 113 NSKVENFRKLILATSKDIRVLLVKIADRLHNMRTIKAIPKEDKRKRIAQETMEIYAPLAD 172
Query: 270 RLGLWALKAELEDLCFAVLQMRA 292
R+G+ ++ ELEDL F +L A
Sbjct: 173 RMGMHRIRDELEDLSFEILNNDA 195
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 10/129 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K+ +SI+ K+++K V + +V D R+++ + I CY L I H+
Sbjct: 234 IYGREKTPFSIWRKVQKKRVSLEQVTDIIGFRIILKN---------IDDCYKTLGIFHKK 284
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W I G+F DYI +PK +GY+S+HTAV G + +E+QIRT +MHE+AE G+A+HW YK
Sbjct: 285 WNCIPGKFKDYISSPKINGYKSIHTAVIGSNKKPIEIQIRTNEMHEFAERGVASHWQYK- 343
Query: 534 TGNKLQSIS 542
+ + S+S
Sbjct: 344 SSERFNSLS 352
>gi|116492882|ref|YP_804617.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus pentosaceus ATCC 25745]
gi|421894250|ref|ZP_16324740.1| bifunctional (p)ppGpp synthase/hydrolase RelA [Pediococcus
pentosaceus IE-3]
gi|116103032|gb|ABJ68175.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus pentosaceus ATCC 25745]
gi|385272794|emb|CCG90112.1| bifunctional (p)ppGpp synthase/hydrolase RelA [Pediococcus
pentosaceus IE-3]
Length = 743
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 109/185 (58%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV AG LHD V+D
Sbjct: 28 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVAAGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GVS++S I + NQ L A + R +LL
Sbjct: 83 TLITLGDIEELFGKDVAVIVDGVSKISKI--------KYKSNQEQL----AENHRKLLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+
Sbjct: 131 MSQDIRVIIVKLADRLHNMRTLQHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDI 190
Query: 284 CFAVL 288
L
Sbjct: 191 SLRYL 195
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM + ++YD A+RV+ +++ CY++L +H
Sbjct: 239 IYGRPKHIYSIYRKMVDQHKQFSQIYDLLAIRVIT---------VSVRDCYAVLGAIHAK 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI G F DYI PK + YQSLHT V GP+G LE+QIRTQ MH AE+G+AAHW YKE
Sbjct: 290 WKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEIQIRTQAMHRVAEYGVAAHWAYKE 349
>gi|430834057|ref|ZP_19452067.1| RelA/SpoT family protein [Enterococcus faecium E0679]
gi|430485957|gb|ELA62838.1| RelA/SpoT family protein [Enterococcus faecium E0679]
Length = 786
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 77 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 131
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 132 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 177
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 178 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 237
Query: 282 DLCFAVLQ 289
D L
Sbjct: 238 DTALRYLN 245
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 282 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 332
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 333 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 392
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 393 WAYKEGKNE 401
>gi|344174549|emb|CCA86347.1| GTP diphosphokinase [Ralstonia syzygii R24]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML-IPSSGK 146
+G T + V +A+A+ TG+P ++H T IL L + +
Sbjct: 9 TEGAGATADRTAREAAVARALAYLDDRAGDHQTLTGEPLVSHARGTVAILEGLRVDAPSL 68
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV 204
+A + IL A + +IE FG EV +LV V +L I + + NV
Sbjct: 69 QAAALFLLPIL------ATGNEKAIEPAFGAEVVRLVHDVRQLLRIGAIAGMVSPAEANV 122
Query: 205 ---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETL 261
N+ + LR MLL D RVVLI+LA RL ++R + +A+ETL
Sbjct: 123 TRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQNKRPAPEGMARETL 182
Query: 262 LIWCSLASRLGLWALKAELEDLCF 285
I+ LA+RLG+W LK ELEDL F
Sbjct: 183 DIYAPLANRLGIWQLKWELEDLGF 206
>gi|145629150|ref|ZP_01784949.1| guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Haemophilus influenzae 22.1-21]
gi|144978653|gb|EDJ88376.1| guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Haemophilus influenzae 22.1-21]
Length = 202
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
>gi|433449313|ref|ZP_20412177.1| GTP pyrophosphokinase [Weissella ceti NC36]
gi|429538827|gb|ELA06865.1| GTP pyrophosphokinase [Weissella ceti NC36]
Length = 741
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V KA AFA+ HH Q R++G+PY+ H I ILA L DTVVAG LHDV++
Sbjct: 27 KVDKAYAFAENLHHDQMRQSGEPYIMHPIQVAGILADL-----NMDPDTVVAGYLHDVIE 81
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D +L + E FG VA +V GVS+LS I R + A + R +LL
Sbjct: 82 DTDATLEELTELFGANVAIIVDGVSKLSKIEYKSSREQL------------AENHRKLLL 129
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+++KLADRLHNMRT+ AL P K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 130 AMSKDIRVIIVKLADRLHNMRTLDALKPEKQRRIASETLEIYAPLADRLGIMTIKWELED 189
Query: 283 LCFAVL 288
L L
Sbjct: 190 LSLRYL 195
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 23/201 (11%)
Query: 364 HDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTLSSRLKSLY 422
HD+AK + +++ + L EEA+++ E +IS+ + +V R K +Y
Sbjct: 201 HDIAKKMKMRRQER-----------LNFVEEAVDEIENIISSLNLEHTDV--YGRPKHIY 247
Query: 423 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFD 482
S++ KM K ++D A+RVVV ++ Y++L ++H W P+ G F
Sbjct: 248 SVYRKMVDKHKDFEDIFDLSAIRVVVD---------SMPETYAVLGMIHSKWTPMPGRFK 298
Query: 483 DYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 542
DYI PK +GYQSLHT V GP G +EVQIRT +MHE AE G+AAHW YKE + +
Sbjct: 299 DYIALPKNNGYQSLHTTVVGPGGRPMEVQIRTHEMHEVAEFGVAAHWAYKEGNHDGADVQ 358
Query: 543 SMDESDIEASSSLSKDTDDHN 563
+ D+ + ++ D H+
Sbjct: 359 NADQQKLNVIQTILDLNDVHD 379
>gi|261416732|ref|YP_003250415.1| (p)ppGpp synthetase I SpoT/RelA [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373188|gb|ACX75933.1| (p)ppGpp synthetase I, SpoT/RelA [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 715
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 17/189 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P ++ ++KAIAF AH GQ+RK+G PY H +ILA L K+ TV+AG+
Sbjct: 23 PKLDEGILRKAIAFIADAHDGQYRKSGMPYTEHPYEVAKILADL-----KQDQATVLAGL 77
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D +L I E FG++ A +V V++++ V + + ++A+
Sbjct: 78 LHDVVEDTPHTLSEISELFGEDTAFMVDAVTKIT------------AVQEASKTAQKAST 125
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R ++ M DPRV++IK+ADR+HNMRT+ + P K + +AQETL I+ L R GL+ L
Sbjct: 126 YRKLITAMAKDPRVIMIKIADRIHNMRTMRYMKPEKRKIIAQETLDIYVPLTHRFGLYKL 185
Query: 277 KAELEDLCF 285
K ELEDL F
Sbjct: 186 KTELEDLSF 194
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K++YSI++KM + G ++D A+R++V I CY L
Sbjct: 236 FDCTIQGRTKNIYSIYNKMIARGCGFEDIFDIFAIRIIV---------ETIPECYLALGY 286
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ F DYI PKP+ YQS+HT V GP+ +EVQIRT+ M AE G AAHW
Sbjct: 287 VHNLWTPLQSRFKDYIATPKPNLYQSIHTTVIGPENKMVEVQIRTKDMDLTAEKGFAAHW 346
Query: 530 LYK-ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDL 569
YK ET ++ + ++ +D ++ S +S + + L DL
Sbjct: 347 AYKMETQHEGEELAWLDHM-VKLQSEISDSKEYLDFLKVDL 386
>gi|294618771|ref|ZP_06698298.1| GTP pyrophosphokinase [Enterococcus faecium E1679]
gi|291594959|gb|EFF26309.1| GTP pyrophosphokinase [Enterococcus faecium E1679]
Length = 737
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|222055238|ref|YP_002537600.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter daltonii FRC-32]
gi|221564527|gb|ACM20499.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter daltonii FRC-32]
Length = 716
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 22/233 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V+ Y P + E V+KA F + H GQ R +G+PYL H + +LA L K V T
Sbjct: 11 VSSYNPSCDLELVRKAYVFCAKVHQGQTRLSGEPYLVHPMEVAGVLAEL-----KLDVPT 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
VV G+LHD V+D +L +EE FG EVA+LV GV+++ ++ T
Sbjct: 66 VVTGLLHDTVEDTLTTLEELEEMFGPEVARLVDGVTKIG------------KIHFKTKEE 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+A + R MLL M +D RV+L+KLADRLHNMRT+ P K R++A+ETL I+ +A+RL
Sbjct: 114 SQAENFRKMLLAMANDIRVILVKLADRLHNMRTLQYQPEPKQRSIAKETLDIYAPIANRL 173
Query: 272 GLWALKAELEDLCFAVL--QMRADLASMWSPRN--RVGYSRRITTIVSSPPLD 320
G+ +K+ELEDL F L Q+ DLAS + + R Y + I+ + +D
Sbjct: 174 GISWVKSELEDLSFRYLDPQIYYDLASKVTKKKKERETYVDEVMQIIKAKLVD 226
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K LYSI+ KM+ + V I ++YD A+RV+V D I+ CY +L
Sbjct: 228 GIKGEVSGRSKHLYSIYRKMQSRSVDIDEIYDLIAIRVMVED---------IRECYEVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W PI G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE G+AAH
Sbjct: 279 IIHSTWKPIPGRFKDYIAMPKGNMYQSLHTTVIGPYGERMEVQIRTSEMHRVAEAGIAAH 338
Query: 529 WLYKE 533
W YKE
Sbjct: 339 WKYKE 343
>gi|419839899|ref|ZP_14363300.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Haemophilus haemolyticus HK386]
gi|386909001|gb|EIJ73685.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Haemophilus haemolyticus HK386]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|344167567|emb|CCA79805.1| GTP diphosphokinase [blood disease bacterium R229]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A + +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATGNEKAIEPAFGAEVA 96
Query: 181 KLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
+LV V +L I + + NV N+ + LR MLL D RVVLI+L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 157 ASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGVWQLKWELEDLGF 206
>gi|417843438|ref|ZP_12489512.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21127]
gi|341949581|gb|EGT76184.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21127]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C L+ RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLSHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFQAMHPR 193
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|303252702|ref|ZP_07338864.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248896|ref|ZP_07530907.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|302648441|gb|EFL78635.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854591|gb|EFM86783.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 568
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|300691314|ref|YP_003752309.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
gi|299078374|emb|CBJ51024.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A + +IE FG EVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATGNEKAIEPAFGAEVA 96
Query: 181 KLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
+LV V +L I + + NV N+ + LR MLL D RVVLI+L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 157 ASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|298529911|ref|ZP_07017313.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509285|gb|EFI33189.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
Length = 720
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 18/198 (9%)
Query: 93 VTGYPIFNDEQ-VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
V+GY D+ +QKA F+ AH GQ R +G+PYL+H + +LA L + DT
Sbjct: 11 VSGYLSGPDQALIQKAYVFSASAHAGQIRLSGEPYLSHPLEVSDMLADLHLDA-----DT 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
+ AG+LHD V+D SL + ++FG+EVA++V GV+++ ++ +
Sbjct: 66 IAAGLLHDTVEDTKASLEEVRDQFGEEVARIVKGVTKIG------------KMSFDSKEE 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+A ++R M+L M DD RV+L+KLADRLHNM+T+ K +AVAQET+ I+ LA+RL
Sbjct: 114 AQAENIRKMILAMADDIRVILVKLADRLHNMKTLEHQSSFKQKAVAQETMDIYAPLANRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
GL+ LK +LEDL ++
Sbjct: 174 GLYRLKIQLEDLSLRYMK 191
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 22/157 (14%)
Query: 393 EEALEKELLISTSYIP-------------GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 439
+E + K+ ++ YI +E +S R+K +YSI+ KM ++ + + +V+
Sbjct: 199 QEGVNKQKVVGEQYIQKVCQNIEEILEQNSIEGRVSGRMKHIYSIYHKMVQQGLSLDQVF 258
Query: 440 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 499
D A RV+V +I+ CY++L +VH +W P+ G F DYI PK + YQSLHT
Sbjct: 259 DIIAFRVLV---------QSIKDCYAVLGLVHSIWKPVPGRFKDYISMPKANMYQSLHTT 309
Query: 500 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
V GPDG +E+QIRT++MH+ AE G+A+HW YKE G
Sbjct: 310 VIGPDGERIEIQIRTEEMHKMAEFGVASHWRYKEDGK 346
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 737 LRTMLRWEEQLRSE----ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 792
LR +L W+E+L+ ASLR + V V P GE+ L G+T
Sbjct: 360 LRQILDWQEELKDPREFMASLRFDLFEDE-------------VYVFTPRGEVKELPEGAT 406
Query: 793 AADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
D A +VG VNG+LV NT LK+GD VE+
Sbjct: 407 PIDFAYMIHTEVGDRCAGAKVNGKLVPLNTVLKNGDTVEI 446
>gi|314991932|ref|ZP_07857387.1| GTP diphosphokinase [Enterococcus faecium TX0133B]
gi|313593516|gb|EFR72361.1| GTP diphosphokinase [Enterococcus faecium TX0133B]
Length = 737
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD +RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLVIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|165977262|ref|YP_001652855.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|307251430|ref|ZP_07533344.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307257924|ref|ZP_07539678.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|165877363|gb|ABY70411.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306856514|gb|EFM88656.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306863571|gb|EFM95500.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 568
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|158335664|ref|YP_001516836.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
gi|158305905|gb|ABW27522.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
Length = 753
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 169/348 (48%), Gaps = 56/348 (16%)
Query: 88 VDGV-DVTGYPIFNDEQ--VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
VDG D G P EQ + +A F + H GQ R +G+PY+ H + +L L S+
Sbjct: 25 VDGAEDKDGIP----EQTLICRAFNFGYQLHEGQRRASGEPYIAHPVSVAELLRDLGGSA 80
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+ AG LHDVV+D + +IE EFG EV +LV GV++LS N + R
Sbjct: 81 A-----MIAAGFLHDVVEDTDVTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTER---- 131
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
EA + R M L M D RV+++KLADRLHNMRT+ LPP K R +AQET ++
Sbjct: 132 --------EAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPPVKQRRIAQETRDVF 183
Query: 265 CSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTA 324
LA+RLG+W K ELEDL F L+ RR+ +V+ D+RT
Sbjct: 184 APLANRLGIWRFKWELEDLAFKYLEPDT--------------YRRMQQLVA----DKRTD 225
Query: 325 SDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKA-KVVQDAG 383
+D ++ + + D LE + + + R K L +++ E Q+K + D
Sbjct: 226 REDH----IEQAITILHDRLEPICSKHL--EISGRPKHLFSISQKMERQQKEFHEIYDVA 279
Query: 384 IALTSLVACEEALEKELLISTSY--IPG-----MEVTLSSRLKSLYSI 424
+ EE ++ + IPG + + S+R +SL+++
Sbjct: 280 AVRVIVKTNEECYRALAVVHDCFRPIPGRFKDYIGLPKSNRYQSLHTV 327
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ +S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 249 LEISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVH 299
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW Y
Sbjct: 300 DCFRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKY 359
Query: 532 KETGNK 537
KE+ N+
Sbjct: 360 KESSNQ 365
>gi|418070749|ref|ZP_12708024.1| GTP pyrophosphokinase [Lactobacillus rhamnosus R0011]
gi|357540169|gb|EHJ24186.1| GTP pyrophosphokinase [Lactobacillus rhamnosus R0011]
Length = 741
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 KNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|260582088|ref|ZP_05849883.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
NT127]
gi|260094978|gb|EEW78871.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
NT127]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGTSVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|299066585|emb|CBJ37775.1| GTP diphosphokinase [Ralstonia solanacearum CMR15]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 529 WLYKETGNK 537
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 122 TGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVA 180
TG+P ++H T IL L + + +A + IL A ++ +IE FGDEVA
Sbjct: 43 TGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPIL------ATDNERAIEPAFGDEVA 96
Query: 181 KLVAGVSRLSYINQLL-----RRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKL 235
+LV V +L I + N+ + LR MLL D RVVLI+L
Sbjct: 97 RLVHDVRQLLRIGAIAGMVSPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRL 156
Query: 236 ADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
A RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 157 ASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|207742944|ref|YP_002259336.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
gi|206594339|emb|CAQ61266.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 43 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 97
Query: 182 LVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLA 236
LV V +L I + + NV N+ + LR MLL D RVVLI+LA
Sbjct: 98 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 157
Query: 237 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 158 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|145630713|ref|ZP_01786492.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
R3021]
gi|144983839|gb|EDJ91289.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
R3021]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|428201543|ref|YP_007080132.1| RelA/SpoT family (p)ppGpp synthetase [Pleurocapsa sp. PCC 7327]
gi|427978975|gb|AFY76575.1| (p)ppGpp synthetase, RelA/SpoT family [Pleurocapsa sp. PCC 7327]
Length = 765
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H I +L L G +A+ + AG LHDVV+D
Sbjct: 51 RAFNFAYELHEGQYRKSGEPYIAHPIAVASLLRDL---GGDKAM--IAAGFLHDVVEDTD 105
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+L IEE FG EV +LV GV++LS N + R +A + R M L M
Sbjct: 106 VTLEEIEERFGAEVRQLVEGVTKLSKFNFSSKTER------------QAENFRRMFLAMA 153
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K R++A ET I+ LA+RLG+ LK ELEDL F
Sbjct: 154 KDIRVIIVKLADRLHNMRTLEHLKPEKQRSIALETREIFAPLANRLGIGRLKWELEDLAF 213
Query: 286 AVLQMRA 292
L+ A
Sbjct: 214 KYLEPEA 220
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 93/159 (58%), Gaps = 17/159 (10%)
Query: 385 ALTSLVA-----CEEALEK--ELLISTSYIPGMEV-TLSSRLKSLYSIFSKMRRKDVGIH 436
A+ SLVA E LEK E+L G+ V + R K LY I+ KM+R+ H
Sbjct: 223 AVQSLVAEKRTDREARLEKVSEMLRERLTSLGINVREIKGRPKHLYGIYQKMQRQQKEFH 282
Query: 437 KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSL 496
++YD ALR++V K+ CY L +VH + PI G F DYI PKP+ YQSL
Sbjct: 283 EIYDIAALRIIVDSKDE---------CYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSL 333
Query: 497 HTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
HT V G +G +EVQIRT +MH AE+G+AAHW YKETG
Sbjct: 334 HTTVVGLNGRPMEVQIRTLEMHHIAEYGIAAHWKYKETG 372
>gi|169831064|ref|YP_001717046.1| (p)ppGpp synthetase I SpoT/RelA [Candidatus Desulforudis
audaxviator MP104C]
gi|169637908|gb|ACA59414.1| (p)ppGpp synthetase I, SpoT/RelA [Candidatus Desulforudis
audaxviator MP104C]
Length = 712
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 114/182 (62%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A FA+ AHH Q R +G+ ++ H + +ILA L + +++VV G+LHDV++D
Sbjct: 22 IQRAYEFAQEAHHNQKRISGEDFIVHPLEVAQILAEL-----ELDLESVVGGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
A L I EEFGDEVA LV GV++L RR+ ++A +LR MLL
Sbjct: 77 AGIELCVIREEFGDEVALLVDGVTKL----------RRLAYRSKE--EQQAENLRKMLLA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHN+RT+ K R +AQETL I+ LA RLG++ +K+ELED+
Sbjct: 125 MAKDVRVILIKLADRLHNLRTLQYHTVPKQREIAQETLEIFAPLAHRLGIYRIKSELEDI 184
Query: 284 CF 285
F
Sbjct: 185 AF 186
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LYSI+ KM ++ + +++D +R++V +++ CY+ L
Sbjct: 227 GITADIQGRPKHLYSIYQKMLAQEKDLEEIFDILGIRILV---------ESVKDCYATLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ G F DYI PK + YQSLHT+V GP+G LE+Q+RT MH AE+G+AAH
Sbjct: 278 VVHTLWKPVPGRFKDYIAMPKSNMYQSLHTSVVGPEGEVLEIQVRTWDMHRTAEYGIAAH 337
Query: 529 WLYK 532
W YK
Sbjct: 338 WRYK 341
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 724 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 783
T + + + K+ LR +L W+ +LR ++ K + DSV V P G+
Sbjct: 344 TRADPAFDEKLAWLRQLLEWQHELRDAREFMETL---KIDLFADSVY------VFTPAGD 394
Query: 784 IMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 828
++ L +GS D A ++ G VNG+LV N +LK GDIV++
Sbjct: 395 VLELPAGSIPLDFAYRIHTDLGHRSIGARVNGKLVPLNYQLKTGDIVDI 443
>gi|69247932|ref|ZP_00604548.1| RelA/SpoT protein [Enterococcus faecium DO]
gi|257880296|ref|ZP_05659949.1| RelA/SpoT protein [Enterococcus faecium 1,230,933]
gi|257882151|ref|ZP_05661804.1| RelA/SpoT protein [Enterococcus faecium 1,231,502]
gi|257885343|ref|ZP_05664996.1| RelA/SpoT protein [Enterococcus faecium 1,231,501]
gi|257890955|ref|ZP_05670608.1| RelA/SpoT protein [Enterococcus faecium 1,231,410]
gi|257894210|ref|ZP_05673863.1| RelA/SpoT protein [Enterococcus faecium 1,231,408]
gi|260562400|ref|ZP_05832914.1| RelA/SpoT protein [Enterococcus faecium C68]
gi|261209225|ref|ZP_05923617.1| RelA/SpoT protein [Enterococcus faecium TC 6]
gi|289566141|ref|ZP_06446576.1| GTP pyrophosphokinase [Enterococcus faecium D344SRF]
gi|293556306|ref|ZP_06674891.1| GTP pyrophosphokinase [Enterococcus faecium E1039]
gi|293560712|ref|ZP_06677191.1| GTP pyrophosphokinase [Enterococcus faecium E1162]
gi|293566146|ref|ZP_06678549.1| GTP pyrophosphokinase [Enterococcus faecium E1071]
gi|294614195|ref|ZP_06694115.1| GTP pyrophosphokinase [Enterococcus faecium E1636]
gi|294622232|ref|ZP_06701292.1| GTP pyrophosphokinase [Enterococcus faecium U0317]
gi|314940914|ref|ZP_07847820.1| GTP diphosphokinase [Enterococcus faecium TX0133C]
gi|314948065|ref|ZP_07851467.1| GTP diphosphokinase [Enterococcus faecium TX0082]
gi|383329817|ref|YP_005355701.1| GTP diphosphokinase [Enterococcus faecium Aus0004]
gi|389869622|ref|YP_006377045.1| GTP diphosphokinase [Enterococcus faecium DO]
gi|406579528|ref|ZP_11054758.1| GTP diphosphokinase [Enterococcus sp. GMD4E]
gi|406581760|ref|ZP_11056896.1| GTP diphosphokinase [Enterococcus sp. GMD3E]
gi|406583837|ref|ZP_11058876.1| GTP diphosphokinase [Enterococcus sp. GMD2E]
gi|406590128|ref|ZP_11064525.1| GTP diphosphokinase [Enterococcus sp. GMD1E]
gi|410936653|ref|ZP_11368517.1| GTP diphosphokinase [Enterococcus sp. GMD5E]
gi|415888277|ref|ZP_11549092.1| GTP pyrophosphokinase [Enterococcus faecium E4453]
gi|416130760|ref|ZP_11597546.1| GTP pyrophosphokinase [Enterococcus faecium E4452]
gi|424779554|ref|ZP_18206474.1| GTP diphosphokinase [Enterococcus faecium V689]
gi|424795887|ref|ZP_18221693.1| GTP diphosphokinase [Enterococcus faecium S447]
gi|424819810|ref|ZP_18244850.1| GTP diphosphokinase [Enterococcus faecium R501]
gi|424853535|ref|ZP_18277909.1| GTP diphosphokinase [Enterococcus faecium R499]
gi|424869894|ref|ZP_18293570.1| GTP diphosphokinase [Enterococcus faecium R497]
gi|424938634|ref|ZP_18354408.1| GTP diphosphokinase [Enterococcus faecium R496]
gi|424952976|ref|ZP_18367967.1| GTP diphosphokinase [Enterococcus faecium R494]
gi|424956106|ref|ZP_18370901.1| GTP diphosphokinase [Enterococcus faecium R446]
gi|424959724|ref|ZP_18374290.1| GTP diphosphokinase [Enterococcus faecium P1986]
gi|424963000|ref|ZP_18377271.1| GTP diphosphokinase [Enterococcus faecium P1190]
gi|424966612|ref|ZP_18380376.1| GTP diphosphokinase [Enterococcus faecium P1140]
gi|424969680|ref|ZP_18383237.1| GTP diphosphokinase [Enterococcus faecium P1139]
gi|424974168|ref|ZP_18387418.1| GTP diphosphokinase [Enterococcus faecium P1137]
gi|424976523|ref|ZP_18389606.1| GTP diphosphokinase [Enterococcus faecium P1123]
gi|424979818|ref|ZP_18392650.1| GTP diphosphokinase [Enterococcus faecium ERV99]
gi|424983299|ref|ZP_18395893.1| GTP diphosphokinase [Enterococcus faecium ERV69]
gi|424986419|ref|ZP_18398840.1| GTP diphosphokinase [Enterococcus faecium ERV38]
gi|424989780|ref|ZP_18402034.1| GTP diphosphokinase [Enterococcus faecium ERV26]
gi|424993982|ref|ZP_18405949.1| GTP diphosphokinase [Enterococcus faecium ERV168]
gi|424996634|ref|ZP_18408432.1| GTP diphosphokinase [Enterococcus faecium ERV165]
gi|425000745|ref|ZP_18412295.1| GTP diphosphokinase [Enterococcus faecium ERV161]
gi|425003498|ref|ZP_18414862.1| GTP diphosphokinase [Enterococcus faecium ERV102]
gi|425007259|ref|ZP_18418397.1| GTP diphosphokinase [Enterococcus faecium ERV1]
gi|425010106|ref|ZP_18421078.1| GTP diphosphokinase [Enterococcus faecium E422]
gi|425013069|ref|ZP_18423816.1| GTP diphosphokinase [Enterococcus faecium E417]
gi|425017455|ref|ZP_18427958.1| GTP diphosphokinase [Enterococcus faecium C621]
gi|425020272|ref|ZP_18430589.1| GTP diphosphokinase [Enterococcus faecium C497]
gi|425022625|ref|ZP_18432796.1| GTP diphosphokinase [Enterococcus faecium C1904]
gi|425031926|ref|ZP_18437021.1| GTP diphosphokinase [Enterococcus faecium 515]
gi|425034244|ref|ZP_18439149.1| GTP diphosphokinase [Enterococcus faecium 514]
gi|425037683|ref|ZP_18442334.1| GTP diphosphokinase [Enterococcus faecium 513]
gi|425040580|ref|ZP_18445039.1| GTP diphosphokinase [Enterococcus faecium 511]
gi|425047514|ref|ZP_18451464.1| GTP diphosphokinase [Enterococcus faecium 509]
gi|425051955|ref|ZP_18455592.1| GTP diphosphokinase [Enterococcus faecium 506]
gi|425057217|ref|ZP_18460644.1| GTP diphosphokinase [Enterococcus faecium 504]
gi|425061739|ref|ZP_18464946.1| GTP diphosphokinase [Enterococcus faecium 503]
gi|427395763|ref|ZP_18888685.1| RelA/SpoT family protein [Enterococcus durans FB129-CNAB-4]
gi|430820722|ref|ZP_19439345.1| RelA/SpoT family protein [Enterococcus faecium E0045]
gi|430823660|ref|ZP_19442229.1| RelA/SpoT family protein [Enterococcus faecium E0120]
gi|430826557|ref|ZP_19444737.1| RelA/SpoT family protein [Enterococcus faecium E0164]
gi|430829158|ref|ZP_19447255.1| RelA/SpoT family protein [Enterococcus faecium E0269]
gi|430832404|ref|ZP_19450450.1| RelA/SpoT family protein [Enterococcus faecium E0333]
gi|430836653|ref|ZP_19454630.1| RelA/SpoT family protein [Enterococcus faecium E0680]
gi|430839686|ref|ZP_19457624.1| RelA/SpoT family protein [Enterococcus faecium E0688]
gi|430845201|ref|ZP_19463097.1| RelA/SpoT family protein [Enterococcus faecium E1050]
gi|430845719|ref|ZP_19463596.1| RelA/SpoT family protein [Enterococcus faecium E1133]
gi|430850320|ref|ZP_19468082.1| RelA/SpoT family protein [Enterococcus faecium E1185]
gi|430853864|ref|ZP_19471590.1| RelA/SpoT family protein [Enterococcus faecium E1258]
gi|430856707|ref|ZP_19474392.1| RelA/SpoT family protein [Enterococcus faecium E1392]
gi|430859526|ref|ZP_19477137.1| RelA/SpoT family protein [Enterococcus faecium E1552]
gi|430860918|ref|ZP_19478513.1| RelA/SpoT family protein [Enterococcus faecium E1573]
gi|430866741|ref|ZP_19481967.1| RelA/SpoT family protein [Enterococcus faecium E1574]
gi|430902730|ref|ZP_19484857.1| RelA/SpoT family protein [Enterococcus faecium E1575]
gi|430960575|ref|ZP_19487111.1| RelA/SpoT family protein [Enterococcus faecium E1576]
gi|431012401|ref|ZP_19490192.1| RelA/SpoT family protein [Enterococcus faecium E1578]
gi|431217876|ref|ZP_19501297.1| RelA/SpoT family protein [Enterococcus faecium E1620]
gi|431238716|ref|ZP_19503585.1| RelA/SpoT family protein [Enterococcus faecium E1622]
gi|431260184|ref|ZP_19505690.1| RelA/SpoT family protein [Enterococcus faecium E1623]
gi|431305128|ref|ZP_19508495.1| RelA/SpoT family protein [Enterococcus faecium E1626]
gi|431468375|ref|ZP_19514404.1| RelA/SpoT family protein [Enterococcus faecium E1630]
gi|431520320|ref|ZP_19516603.1| RelA/SpoT family protein [Enterococcus faecium E1634]
gi|431548672|ref|ZP_19519144.1| RelA/SpoT family protein [Enterococcus faecium E1731]
gi|431744430|ref|ZP_19533298.1| RelA/SpoT family protein [Enterococcus faecium E2071]
gi|431745118|ref|ZP_19533972.1| RelA/SpoT family protein [Enterococcus faecium E2134]
gi|431749532|ref|ZP_19538271.1| RelA/SpoT family protein [Enterococcus faecium E2297]
gi|431755466|ref|ZP_19544115.1| RelA/SpoT family protein [Enterococcus faecium E2883]
gi|431760950|ref|ZP_19549541.1| RelA/SpoT family protein [Enterococcus faecium E3346]
gi|431765578|ref|ZP_19554088.1| RelA/SpoT family protein [Enterococcus faecium E4215]
gi|431768374|ref|ZP_19556813.1| RelA/SpoT family protein [Enterococcus faecium E1321]
gi|431771621|ref|ZP_19560002.1| RelA/SpoT family protein [Enterococcus faecium E1644]
gi|431773741|ref|ZP_19562058.1| RelA/SpoT family protein [Enterococcus faecium E2369]
gi|431777486|ref|ZP_19565740.1| RelA/SpoT family protein [Enterococcus faecium E2560]
gi|431779833|ref|ZP_19568023.1| RelA/SpoT family protein [Enterococcus faecium E4389]
gi|431783794|ref|ZP_19571884.1| RelA/SpoT family protein [Enterococcus faecium E6012]
gi|431786298|ref|ZP_19574312.1| RelA/SpoT family protein [Enterococcus faecium E6045]
gi|68194634|gb|EAN09121.1| RelA/SpoT protein [Enterococcus faecium DO]
gi|257814524|gb|EEV43282.1| RelA/SpoT protein [Enterococcus faecium 1,230,933]
gi|257817809|gb|EEV45137.1| RelA/SpoT protein [Enterococcus faecium 1,231,502]
gi|257821199|gb|EEV48329.1| RelA/SpoT protein [Enterococcus faecium 1,231,501]
gi|257827315|gb|EEV53941.1| RelA/SpoT protein [Enterococcus faecium 1,231,410]
gi|257830589|gb|EEV57196.1| RelA/SpoT protein [Enterococcus faecium 1,231,408]
gi|260073324|gb|EEW61665.1| RelA/SpoT protein [Enterococcus faecium C68]
gi|260076771|gb|EEW64506.1| RelA/SpoT protein [Enterococcus faecium TC 6]
gi|289162086|gb|EFD09951.1| GTP pyrophosphokinase [Enterococcus faecium D344SRF]
gi|291590072|gb|EFF21864.1| GTP pyrophosphokinase [Enterococcus faecium E1071]
gi|291592971|gb|EFF24560.1| GTP pyrophosphokinase [Enterococcus faecium E1636]
gi|291598274|gb|EFF29367.1| GTP pyrophosphokinase [Enterococcus faecium U0317]
gi|291601565|gb|EFF31832.1| GTP pyrophosphokinase [Enterococcus faecium E1039]
gi|291605303|gb|EFF34758.1| GTP pyrophosphokinase [Enterococcus faecium E1162]
gi|313600272|gb|EFR79115.1| GTP diphosphokinase [Enterococcus faecium TX0133C]
gi|313645481|gb|EFS10061.1| GTP diphosphokinase [Enterococcus faecium TX0082]
gi|364093929|gb|EHM36159.1| GTP pyrophosphokinase [Enterococcus faecium E4452]
gi|364094941|gb|EHM37052.1| GTP pyrophosphokinase [Enterococcus faecium E4453]
gi|378939511|gb|AFC64583.1| GTP diphosphokinase [Enterococcus faecium Aus0004]
gi|388534871|gb|AFK60063.1| GTP diphosphokinase [Enterococcus faecium DO]
gi|402923904|gb|EJX44154.1| GTP diphosphokinase [Enterococcus faecium S447]
gi|402925120|gb|EJX45291.1| GTP diphosphokinase [Enterococcus faecium V689]
gi|402925823|gb|EJX45917.1| GTP diphosphokinase [Enterococcus faecium R501]
gi|402932657|gb|EJX52146.1| GTP diphosphokinase [Enterococcus faecium R499]
gi|402935071|gb|EJX54355.1| GTP diphosphokinase [Enterococcus faecium R497]
gi|402936556|gb|EJX55726.1| GTP diphosphokinase [Enterococcus faecium R496]
gi|402940183|gb|EJX59039.1| GTP diphosphokinase [Enterococcus faecium R494]
gi|402946666|gb|EJX64923.1| GTP diphosphokinase [Enterococcus faecium R446]
gi|402949655|gb|EJX67700.1| GTP diphosphokinase [Enterococcus faecium P1986]
gi|402950598|gb|EJX68588.1| GTP diphosphokinase [Enterococcus faecium P1190]
gi|402956167|gb|EJX73641.1| GTP diphosphokinase [Enterococcus faecium P1140]
gi|402957308|gb|EJX74705.1| GTP diphosphokinase [Enterococcus faecium P1137]
gi|402963682|gb|EJX80533.1| GTP diphosphokinase [Enterococcus faecium P1139]
gi|402968072|gb|EJX84574.1| GTP diphosphokinase [Enterococcus faecium ERV99]
gi|402969316|gb|EJX85739.1| GTP diphosphokinase [Enterococcus faecium P1123]
gi|402971897|gb|EJX88137.1| GTP diphosphokinase [Enterococcus faecium ERV69]
gi|402976533|gb|EJX92419.1| GTP diphosphokinase [Enterococcus faecium ERV38]
gi|402981157|gb|EJX96705.1| GTP diphosphokinase [Enterococcus faecium ERV26]
gi|402981321|gb|EJX96860.1| GTP diphosphokinase [Enterococcus faecium ERV168]
gi|402988221|gb|EJY03239.1| GTP diphosphokinase [Enterococcus faecium ERV165]
gi|402988601|gb|EJY03598.1| GTP diphosphokinase [Enterococcus faecium ERV161]
gi|402991807|gb|EJY06555.1| GTP diphosphokinase [Enterococcus faecium ERV102]
gi|402995444|gb|EJY09907.1| GTP diphosphokinase [Enterococcus faecium ERV1]
gi|403001134|gb|EJY15206.1| GTP diphosphokinase [Enterococcus faecium E422]
gi|403001881|gb|EJY15900.1| GTP diphosphokinase [Enterococcus faecium E417]
gi|403004240|gb|EJY18059.1| GTP diphosphokinase [Enterococcus faecium C621]
gi|403009667|gb|EJY23096.1| GTP diphosphokinase [Enterococcus faecium C497]
gi|403012474|gb|EJY25699.1| GTP diphosphokinase [Enterococcus faecium C1904]
gi|403014462|gb|EJY27465.1| GTP diphosphokinase [Enterococcus faecium 515]
gi|403020940|gb|EJY33429.1| GTP diphosphokinase [Enterococcus faecium 514]
gi|403021466|gb|EJY33924.1| GTP diphosphokinase [Enterococcus faecium 513]
gi|403028235|gb|EJY40070.1| GTP diphosphokinase [Enterococcus faecium 511]
gi|403033499|gb|EJY44999.1| GTP diphosphokinase [Enterococcus faecium 509]
gi|403036143|gb|EJY47507.1| GTP diphosphokinase [Enterococcus faecium 506]
gi|403040620|gb|EJY51683.1| GTP diphosphokinase [Enterococcus faecium 503]
gi|403040883|gb|EJY51930.1| GTP diphosphokinase [Enterococcus faecium 504]
gi|404455256|gb|EKA02115.1| GTP diphosphokinase [Enterococcus sp. GMD4E]
gi|404459225|gb|EKA05595.1| GTP diphosphokinase [Enterococcus sp. GMD3E]
gi|404464985|gb|EKA10494.1| GTP diphosphokinase [Enterococcus sp. GMD2E]
gi|404469816|gb|EKA14531.1| GTP diphosphokinase [Enterococcus sp. GMD1E]
gi|410735069|gb|EKQ76986.1| GTP diphosphokinase [Enterococcus sp. GMD5E]
gi|425723752|gb|EKU86639.1| RelA/SpoT family protein [Enterococcus durans FB129-CNAB-4]
gi|430439268|gb|ELA49634.1| RelA/SpoT family protein [Enterococcus faecium E0045]
gi|430441693|gb|ELA51764.1| RelA/SpoT family protein [Enterococcus faecium E0120]
gi|430444965|gb|ELA54762.1| RelA/SpoT family protein [Enterococcus faecium E0164]
gi|430480102|gb|ELA57296.1| RelA/SpoT family protein [Enterococcus faecium E0333]
gi|430481238|gb|ELA58395.1| RelA/SpoT family protein [Enterococcus faecium E0269]
gi|430487976|gb|ELA64669.1| RelA/SpoT family protein [Enterococcus faecium E0680]
gi|430490422|gb|ELA66947.1| RelA/SpoT family protein [Enterococcus faecium E0688]
gi|430496035|gb|ELA72155.1| RelA/SpoT family protein [Enterococcus faecium E1050]
gi|430535658|gb|ELA76057.1| RelA/SpoT family protein [Enterococcus faecium E1185]
gi|430540113|gb|ELA80331.1| RelA/SpoT family protein [Enterococcus faecium E1258]
gi|430540337|gb|ELA80540.1| RelA/SpoT family protein [Enterococcus faecium E1133]
gi|430543493|gb|ELA83555.1| RelA/SpoT family protein [Enterococcus faecium E1552]
gi|430544143|gb|ELA84187.1| RelA/SpoT family protein [Enterococcus faecium E1392]
gi|430550791|gb|ELA90561.1| RelA/SpoT family protein [Enterococcus faecium E1574]
gi|430551236|gb|ELA91005.1| RelA/SpoT family protein [Enterococcus faecium E1573]
gi|430554665|gb|ELA94250.1| RelA/SpoT family protein [Enterococcus faecium E1575]
gi|430556084|gb|ELA95600.1| RelA/SpoT family protein [Enterococcus faecium E1576]
gi|430559912|gb|ELA99236.1| RelA/SpoT family protein [Enterococcus faecium E1578]
gi|430569791|gb|ELB08777.1| RelA/SpoT family protein [Enterococcus faecium E1620]
gi|430572417|gb|ELB11279.1| RelA/SpoT family protein [Enterococcus faecium E1622]
gi|430576923|gb|ELB15548.1| RelA/SpoT family protein [Enterococcus faecium E1623]
gi|430579335|gb|ELB17844.1| RelA/SpoT family protein [Enterococcus faecium E1626]
gi|430584052|gb|ELB22403.1| RelA/SpoT family protein [Enterococcus faecium E1630]
gi|430585200|gb|ELB23495.1| RelA/SpoT family protein [Enterococcus faecium E1634]
gi|430590980|gb|ELB29025.1| RelA/SpoT family protein [Enterococcus faecium E1731]
gi|430605173|gb|ELB42578.1| RelA/SpoT family protein [Enterococcus faecium E2071]
gi|430611172|gb|ELB48282.1| RelA/SpoT family protein [Enterococcus faecium E2134]
gi|430611446|gb|ELB48536.1| RelA/SpoT family protein [Enterococcus faecium E2297]
gi|430616688|gb|ELB53583.1| RelA/SpoT family protein [Enterococcus faecium E2883]
gi|430623229|gb|ELB59929.1| RelA/SpoT family protein [Enterococcus faecium E3346]
gi|430628052|gb|ELB64509.1| RelA/SpoT family protein [Enterococcus faecium E4215]
gi|430629449|gb|ELB65850.1| RelA/SpoT family protein [Enterococcus faecium E1321]
gi|430633038|gb|ELB69221.1| RelA/SpoT family protein [Enterococcus faecium E1644]
gi|430635627|gb|ELB71720.1| RelA/SpoT family protein [Enterococcus faecium E2369]
gi|430639598|gb|ELB75471.1| RelA/SpoT family protein [Enterococcus faecium E2560]
gi|430641221|gb|ELB77034.1| RelA/SpoT family protein [Enterococcus faecium E4389]
gi|430644484|gb|ELB80099.1| RelA/SpoT family protein [Enterococcus faecium E6012]
gi|430645783|gb|ELB81286.1| RelA/SpoT family protein [Enterococcus faecium E6045]
Length = 737
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|421887916|ref|ZP_16319044.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
gi|378966725|emb|CCF95792.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
Length = 746
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 17/153 (11%)
Query: 393 EEALEKELLI--------STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +YD RA
Sbjct: 223 EKRIEREKFIGEAIAQLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAF 282
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G D
Sbjct: 283 RVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDD 333
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
G ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 334 GRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 366
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 115 HHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
H G R TG+P ++H T IL L + ++ A L + A ++ +IE
Sbjct: 35 HAGDHRTLTGEPLVSHARGTVAILDGL-----RVDAPSLQAAALFLLPTLAADNEKAIEP 89
Query: 174 EFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDP 228
FG EVA+LV V +L I + + NV N+ + LR MLL D
Sbjct: 90 AFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALRKMLLAFAQDI 149
Query: 229 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 150 RVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|342904872|ref|ZP_08726668.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21621]
gi|341952328|gb|EGT78858.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21621]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|225026135|ref|ZP_03715327.1| hypothetical protein EUBHAL_00376 [Eubacterium hallii DSM 3353]
gi|224956540|gb|EEG37749.1| RelA/SpoT family protein [Eubacterium hallii DSM 3353]
Length = 758
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + V+KA A+ AH Q RK+G+PY+ H + ILA L + +T+VAG
Sbjct: 39 HPSTDLSMVEKAYKLARDAHKDQKRKSGEPYIIHPLCVAIILAEL-----ELDKETIVAG 93
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHDVV+D +L + EF DEVA LV GV++L QL H ++++ +A
Sbjct: 94 ILHDVVEDTTATLEDLSREFNDEVALLVDGVTKLG---QLSYSHDKMDL--------QAE 142
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+
Sbjct: 143 NLRKMFLAMAKDIRVILIKLADRLHNMRTLQYMRPEKQKEKARETMDIYAPIAHRLGISK 202
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL LQ
Sbjct: 203 IKTELDDLSLKYLQ 216
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R+K L+SI+ KMR ++ + ++YD A+R+ V ++ CY+ L
Sbjct: 253 GIRAEIDGRVKHLFSIYKKMRNQNKTLDQIYDIFAVRIKVD---------TVKDCYAALG 303
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PK + YQSLHT + G G+ E+QIRT +MH AE+G+AAH
Sbjct: 304 VIHEMYKPIPGRFKDYIAMPKQNMYQSLHTTLIGSSGTPFEIQIRTFEMHRTAEYGIAAH 363
Query: 529 WLYKETG---NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDL 569
W YKE G NK + S +E +S + + L TDL
Sbjct: 364 WKYKEGGGNINKEEEKLSWLRQILEWQQDMSDNKEFLTMLKTDL 407
>gi|431702948|ref|ZP_19525071.1| RelA/SpoT family protein [Enterococcus faecium E1904]
gi|430597031|gb|ELB34842.1| RelA/SpoT family protein [Enterococcus faecium E1904]
Length = 737
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|425044315|ref|ZP_18448481.1| GTP diphosphokinase [Enterococcus faecium 510]
gi|403030120|gb|EJY41832.1| GTP diphosphokinase [Enterococcus faecium 510]
Length = 737
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|421897088|ref|ZP_16327461.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
gi|206588253|emb|CAQ18811.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
Length = 729
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 222 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 272
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 273 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 332
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE G+K
Sbjct: 333 AEYGVAAHWRYKEAGSK 349
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 26 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 80
Query: 182 LVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLA 236
LV V +L I + + NV N+ + LR MLL D RVVLI+LA
Sbjct: 81 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 140
Query: 237 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 141 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 189
>gi|46143480|ref|ZP_00135156.2| COG0317: Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126209287|ref|YP_001054512.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
(ppGpp)ase) [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|303251149|ref|ZP_07337333.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253509|ref|ZP_07535379.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|126098079|gb|ABN74907.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
(ppGpp)ase) [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|302650000|gb|EFL80172.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859010|gb|EFM91053.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 568
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIQGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|417846426|ref|ZP_12492433.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21639]
gi|341952564|gb|EGT79089.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M21639]
Length = 702
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|373467692|ref|ZP_09558986.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus sp. oral taxon 851 str. F0397]
gi|371758413|gb|EHO47186.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus sp. oral taxon 851 str. F0397]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|423078898|ref|ZP_17067574.1| GTP diphosphokinase, partial [Lactobacillus rhamnosus ATCC 21052]
gi|357548801|gb|EHJ30660.1| GTP diphosphokinase, partial [Lactobacillus rhamnosus ATCC 21052]
Length = 760
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 47 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 101
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 102 KNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 149
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 150 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 209
Query: 284 CFAVLQ 289
L
Sbjct: 210 SLRYLN 215
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 257 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 307
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 308 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 367
>gi|89093832|ref|ZP_01166778.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Neptuniibacter caesariensis]
gi|89081962|gb|EAR61188.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Oceanospirillum sp. MED92]
Length = 713
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 117/183 (63%), Gaps = 17/183 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV+++ +A++AH GQ RK+G+PY+TH + ILA L + +++A +LHDV++
Sbjct: 22 QVRRSYFYAEQAHDGQKRKSGEPYVTHPLAAANILAEL-----RMDHQSLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + IE +FG VA +V GVS+L+++ T +AN+ + M+L
Sbjct: 77 DTEVTYEGIESQFGKVVADIVDGVSKLTHLEF------------ETKAEAQANNFQKMVL 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M +D RV+L+KLADRLHNMRT+ A+PP K R +A+ETL I+ +A+RLG+ ++ ELED
Sbjct: 125 AMAEDIRVILVKLADRLHNMRTLGAMPPHKQRRIARETLDIYAPIAARLGMRDVQVELED 184
Query: 283 LCF 285
L F
Sbjct: 185 LAF 187
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 363 LHDLAKSSEAQKKAK-----VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 417
L DLA + ++K VVQ G + +E +EK L G+ ++ R
Sbjct: 182 LEDLAFQAHYPMRSKHIRRAVVQARGQRKDVISTIQETIEKRLQKE-----GLSGQVTGR 236
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K LYSI+SKMR + ++ D A R+V ++ CY L VH L+ P+
Sbjct: 237 EKHLYSIYSKMRAQRKSFSEIMDVFAFRIVTD---------SVDDCYRTLGAVHNLYKPV 287
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
G F DYI PK +GYQSLHT + G +EVQIRT +M A G+A H YK
Sbjct: 288 HGRFKDYIAIPKANGYQSLHTDLFGARDITIEVQIRTHEMDAVASQGIAEHSHYKH---- 343
Query: 538 LQSISSMDESDIEASSS 554
DE DI+AS S
Sbjct: 344 -------DEDDIDASES 353
>gi|218296101|ref|ZP_03496870.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
gi|218243478|gb|EED10007.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
Length = 726
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 114/195 (58%), Gaps = 18/195 (9%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+ E+V KA FA+ AH GQ RK+G+PY+TH + ILA L + DTV AG+LHD
Sbjct: 22 DREKVHKAYLFAEEAHRGQLRKSGEPYITHPVAVAEILASL-----RMDADTVAAGLLHD 76
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDL 217
++D + +E FG V ++V G +++S + + L EE A DL
Sbjct: 77 TMEDCGVAGEELERRFGPAVRRIVEGETKVSKLYKF-----------ANLEGEEKRAEDL 125
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R M + M +D R++++KLADRLHN+RT+ +P K + +AQETL I+ LA RLG+ +K
Sbjct: 126 RQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPEGKQKRIAQETLEIYAPLAHRLGMGQIK 185
Query: 278 AELEDLCFAVLQMRA 292
ELEDL F L A
Sbjct: 186 WELEDLSFRYLHPEA 200
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 7/150 (4%)
Query: 388 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 447
++ EEAL+++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMEVLEEALKQDALLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 448 VGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 503
+ K + T + Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPSPTEEAKGLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 504 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 339 EGLPLEVQIRTREMHRIAEYGIAAHWLYKE 368
>gi|83748296|ref|ZP_00945321.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
gi|83725028|gb|EAP72181.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
Length = 792
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 17/153 (11%)
Query: 393 EEALEKELLI--------STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +YD RA
Sbjct: 269 EKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAF 328
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G D
Sbjct: 329 RVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDD 379
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
G ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 380 GRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 412
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+P ++H T IL L + ++ A L + A ++ +IE FG EVA+
Sbjct: 89 TGEPLVSHARGTVAILEGL-----RVDAPSLQAAALFLLPTLAADNEKAIEPAFGAEVAR 143
Query: 182 LVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLA 236
LV V +L I + + NV N+ + LR MLL D RVVLI+LA
Sbjct: 144 LVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLA 203
Query: 237 DRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 204 SRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 252
>gi|340756064|ref|ZP_08692697.1| hypothetical protein FSEG_02233 [Fusobacterium sp. D12]
gi|419841290|ref|ZP_14364665.1| RelA/SpoT family protein [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|340573064|gb|EGR53908.1| hypothetical protein FSEG_02233 [Fusobacterium sp. D12]
gi|386905616|gb|EIJ70376.1| RelA/SpoT family protein [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 725
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A FA+ +H GQ+RK+G+ Y+ H I +IL L K DT++A ILHD+V
Sbjct: 21 DKIKLAYYFAEESHRGQYRKSGEAYIMHPIEVAKILVEL-----KSDTDTIIAAILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L IE FG VA LV GV++L ++ GT E ++R M+
Sbjct: 76 EDTFITLADIEYNFGKNVAHLVDGVTKLK------------SLPNGTKNQSE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + V+LIKLADRLHNMRT+ + P K +AQETL ++ LA RLG+ +K ELE
Sbjct: 122 LAMTQNLHVILIKLADRLHNMRTLKFMKPEKQIVIAQETLEVYAPLAHRLGIARIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L
Sbjct: 182 DLCLYYLH 189
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +YD +R++V + + CY +L
Sbjct: 226 GIKGQVKGRFKHFYSIYKKMYELGKEFDDIYDLMGVRIIVSNTSD---------CYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H + P+ G F DYI PK + YQS+HT + GP +E+QIRT++M AE G+AAH
Sbjct: 277 EIHSRYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLAKFIEIQIRTEEMDRVAEEGVAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WAYKE 341
>gi|325577827|ref|ZP_08148102.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus parainfluenzae ATCC 33392]
gi|325160572|gb|EGC72698.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Haemophilus parainfluenzae ATCC 33392]
Length = 706
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A + +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAEMHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTESQLKDEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFEAMHPR 193
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V ++ CY L +H L+ P
Sbjct: 236 REKHLYKIYQKMRMKDQKFHSIMDIYAFRVIVN---------SVDDCYRGLGQMHSLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G+ DYI P+ +GYQ+L T++ GP G +EV ++T++M + AE G+ AHW+YKE G
Sbjct: 287 RPGKVKDYIAVPRANGYQALQTSMIGPHGVPVEVHLQTEEMEQVAEMGITAHWVYKEGG 345
>gi|148827158|ref|YP_001291911.1| glutamate racemase [Haemophilus influenzae PittGG]
gi|148718400|gb|ABQ99527.1| glutamate racemase [Haemophilus influenzae PittGG]
Length = 704
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|30995477|ref|NP_439885.2| guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Haemophilus influenzae Rd KW20]
gi|260580698|ref|ZP_05848525.1| guanosine-3'5'-bis(diphosphate) 3' [Haemophilus influenzae RdAW]
gi|260092760|gb|EEW76696.1| guanosine-3'5'-bis(diphosphate) 3' [Haemophilus influenzae RdAW]
Length = 704
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|307262318|ref|ZP_07543966.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306867981|gb|EFM99809.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 568
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVVG+ + CY L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVGN---------VDHCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|299822818|ref|ZP_07054704.1| GTP diphosphokinase [Listeria grayi DSM 20601]
gi|299816347|gb|EFI83585.1| GTP diphosphokinase [Listeria grayi DSM 20601]
Length = 740
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 108/185 (58%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ AH QFRK+G+PY+ H I ILA L + TV +G LHDVV+D
Sbjct: 30 VEKAYTFARDAHKEQFRKSGEPYIIHPIQVAGILAEL-----RMDPSTVASGFLHDVVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L ++ EFG+EVA LV GV++L I + H ++A + R M +
Sbjct: 85 TPVTLDDLKAEFGEEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 132
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 133 MAQDIRVILIKLADRLHNMRTLKHLPTQKQRRIANETLEIFAPLAHRLGISRVKWELEDT 192
Query: 284 CFAVL 288
L
Sbjct: 193 ALRYL 197
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R K +YSI+ KM + +++YD A+R++V +I+ CY++L
Sbjct: 235 NIQADITGRPKHIYSIYRKMSIQQKQFNEIYDLLAVRIIVS---------SIKDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 286 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTTEMHQIAEYGVAAH 345
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + + +S D
Sbjct: 346 WAYKE-GKVVNAKTSFD 361
>gi|307264529|ref|ZP_07546113.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|306870128|gb|EFN01888.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 568
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGSSVAEIVQGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 118 ----NFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVV + + CY L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVEN---------LDNCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYKIRDYIAVPKTNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKE 533
W Y E
Sbjct: 339 WRYTE 343
>gi|417838830|ref|ZP_12485058.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M19107]
gi|341956365|gb|EGT82793.1| putative pyrophosphohydrolase-like protein [Haemophilus
haemolyticus M19107]
Length = 704
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|120610273|ref|YP_969951.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax citrulli AAC00-1]
gi|120588737|gb|ABM32177.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax citrulli AAC00-1]
Length = 753
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 254 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 304
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 305 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 364
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE G K +S+ E D
Sbjct: 365 AYKEAGAKGYAGVSASSEYD 384
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ H IL + S +A +V AC
Sbjct: 39 RARAFAEPLLSGETLETGENTFAHAEAVAAILKTIGGSEAMQAASYLV---------HAC 89
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH------EEAN 215
L EE FG A L ++L + R + GH
Sbjct: 90 SHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQ-------LAGHAVDDPATHTE 142
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
++R MLL D RVV+++LA RL +R A + ++A+E L ++ LA+RLG+W
Sbjct: 143 NVRKMLLAFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFAPLANRLGIWQ 202
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL F L+
Sbjct: 203 MKWELEDLSFRFLE 216
>gi|419717375|ref|ZP_14244759.1| GTP pyrophosphokinase, partial [Mycobacterium abscessus M94]
gi|382938387|gb|EIC62724.1| GTP pyrophosphokinase, partial [Mycobacterium abscessus M94]
Length = 749
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 34 YPKADRSVLQRAYEVAESRHAEQFRKSGDPYITHPVAVANILAELGMDT-----TTLVAA 88
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
ILHD V+D SL + EFG EVA LV GV++L + LG+ E
Sbjct: 89 ILHDTVEDTGYSLEQLTAEFGTEVAHLVDGVTKLDKV---------------VLGNAAEG 133
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 134 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 193
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 194 TVKWELEDLSFAILH 208
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 246 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 296
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 297 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 356
Query: 530 LYKETGNK 537
YKE +
Sbjct: 357 RYKEAKGR 364
>gi|260219530|emb|CBA26375.1| GTP pyrophosphokinase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 745
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R K +YSI KMR K +G +VYD RALR+VV P + CY+ L
Sbjct: 254 GVHATVQGRPKHIYSIVKKMRGKSLGFDQVYDIRALRIVV---------PTVPDCYAALS 304
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH + PI EFDDYI PKP+GYQSLHT V+ +EVQIRTQ MH++AEHG+AAH
Sbjct: 305 LVHTRFTPITEEFDDYIARPKPNGYQSLHTVVRDAGSQPIEVQIRTQAMHDHAEHGVAAH 364
Query: 529 WLYKETGNK 537
W YKE G K
Sbjct: 365 WAYKEAGAK 373
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A AFA+ + TG+ L H IL + S +A +V
Sbjct: 31 LQRARAFAEPLLATESLDTGENVLQHADAVAAILHTIGGSEAMQAASYLVY--------- 81
Query: 164 ACESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLR------RHRRINVNQGTLGHEE 213
AC+ L I + FGD A L ++L + ++ R H +
Sbjct: 82 ACDHLNKPHEIIAKAFGDNFADLALETTKLVRLQRMARLAQQSASHSSSAAPMAQTAAAQ 141
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
+R MLL D RVV+++LA RL +R A +A E L ++ LA+RLG+
Sbjct: 142 TESVRKMLLAFSKDLRVVMLRLASRLQTLRHFAATKLPVPPGLASEALQVFAPLANRLGI 201
Query: 274 WALKAELEDLCFAVLQ 289
W +K E+EDL F L+
Sbjct: 202 WEIKWEMEDLSFRFLE 217
>gi|393776779|ref|ZP_10365073.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
gi|392716136|gb|EIZ03716.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
Length = 735
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K +YSI+ KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 236 GVRAEVTGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------VKDCYTVLG 286
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 287 IVHHIWHPIPKEFDDYISRPKANGYRSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 346
Query: 529 WLYKETGNK 537
W YKE G+K
Sbjct: 347 WRYKEAGSK 355
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A+ F + G TG+ L+H T R+L L A AG L V
Sbjct: 17 VVQALDFVRTRGEGHTVFTGESMLSHAEGTLRVLEGLDVGPSAEA-----AGCLFAVAAA 71
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGTLGHEEANDLRVML 221
+ IE +FG+EVA+LV + +L I + + + N+ + LR ML
Sbjct: 72 VPGAETEIETQFGEEVARLVRDIRQLLRIGAIATHADAVGSSKNEAEARQHQVESLRKML 131
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVVL++LA RL +R + +A+ETL ++ LA+RLG+W +K ELE
Sbjct: 132 LAFAQDIRVVLVRLASRLATLRWLAQNKREALPGMARETLDVYAPLANRLGIWQIKWELE 191
Query: 282 DLCF 285
DL F
Sbjct: 192 DLAF 195
>gi|169629960|ref|YP_001703609.1| GTP pyrophosphokinase [Mycobacterium abscessus ATCC 19977]
gi|365870761|ref|ZP_09410304.1| GTP pyrophosphokinase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|414581193|ref|ZP_11438333.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-1215]
gi|418420971|ref|ZP_12994149.1| GTP pyrophosphokinase [Mycobacterium abscessus subsp. bolletii BD]
gi|419710109|ref|ZP_14237576.1| GTP pyrophosphokinase [Mycobacterium abscessus M93]
gi|420864283|ref|ZP_15327673.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0303]
gi|420869074|ref|ZP_15332456.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0726-RA]
gi|420873519|ref|ZP_15336896.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0726-RB]
gi|420881241|ref|ZP_15344608.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0304]
gi|420883856|ref|ZP_15347217.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0421]
gi|420890241|ref|ZP_15353589.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0422]
gi|420896623|ref|ZP_15359962.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0708]
gi|420902624|ref|ZP_15365955.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0817]
gi|420907371|ref|ZP_15370689.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-1212]
gi|420910479|ref|ZP_15373791.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0125-R]
gi|420916932|ref|ZP_15380236.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0125-S]
gi|420922096|ref|ZP_15385393.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0728-S]
gi|420927758|ref|ZP_15391040.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-1108]
gi|420967303|ref|ZP_15430508.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0810-R]
gi|420971884|ref|ZP_15435078.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0921]
gi|420978098|ref|ZP_15441276.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0212]
gi|420983485|ref|ZP_15446652.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0728-R]
gi|420987780|ref|ZP_15450936.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0206]
gi|421007450|ref|ZP_15470561.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0119-R]
gi|421013448|ref|ZP_15476530.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0122-R]
gi|421018350|ref|ZP_15481409.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0122-S]
gi|421024208|ref|ZP_15487253.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0731]
gi|421029676|ref|ZP_15492709.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0930-R]
gi|421034608|ref|ZP_15497629.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0930-S]
gi|421040060|ref|ZP_15503069.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0116-R]
gi|421043873|ref|ZP_15506874.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0116-S]
gi|421049832|ref|ZP_15512826.1| GTP pyrophosphokinase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|169241927|emb|CAM62955.1| Probable GTP pyrophosphokinase [Mycobacterium abscessus]
gi|363997033|gb|EHM18247.1| GTP pyrophosphokinase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|363998422|gb|EHM19629.1| GTP pyrophosphokinase [Mycobacterium abscessus subsp. bolletii BD]
gi|382941902|gb|EIC66220.1| GTP pyrophosphokinase [Mycobacterium abscessus M93]
gi|392068544|gb|EIT94391.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0726-RA]
gi|392071258|gb|EIT97104.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0303]
gi|392072547|gb|EIT98388.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0726-RB]
gi|392086150|gb|EIU11975.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0304]
gi|392087179|gb|EIU13002.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0421]
gi|392087989|gb|EIU13811.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0422]
gi|392095935|gb|EIU21730.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0708]
gi|392099985|gb|EIU25779.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0817]
gi|392105275|gb|EIU31061.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-1212]
gi|392112473|gb|EIU38242.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0125-R]
gi|392116345|gb|EIU42113.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-1215]
gi|392121072|gb|EIU46838.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0125-S]
gi|392131932|gb|EIU57678.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0728-S]
gi|392134991|gb|EIU60732.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-1108]
gi|392166372|gb|EIU92057.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0212]
gi|392166996|gb|EIU92678.1| GTP pyrophosphokinase [Mycobacterium abscessus 5S-0921]
gi|392168481|gb|EIU94159.1| GTP pyrophosphokinase [Mycobacterium abscessus 6G-0728-R]
gi|392182059|gb|EIV07710.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0206]
gi|392198903|gb|EIV24513.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0119-R]
gi|392203198|gb|EIV28793.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0122-R]
gi|392210113|gb|EIV35684.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0122-S]
gi|392212223|gb|EIV37786.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0731]
gi|392225152|gb|EIV50671.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0116-R]
gi|392225765|gb|EIV51281.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0930-R]
gi|392227929|gb|EIV53442.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0930-S]
gi|392237725|gb|EIV63219.1| GTP pyrophosphokinase [Mycobacterium abscessus 4S-0116-S]
gi|392238435|gb|EIV63928.1| GTP pyrophosphokinase [Mycobacterium massiliense CCUG 48898]
gi|392252744|gb|EIV78213.1| GTP pyrophosphokinase [Mycobacterium abscessus 3A-0810-R]
Length = 788
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 73 YPKADRSVLQRAYEVAESRHAEQFRKSGDPYITHPVAVANILAELGMDT-----TTLVAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
ILHD V+D SL + EFG EVA LV GV++L + LG+ E
Sbjct: 128 ILHDTVEDTGYSLEQLTAEFGTEVAHLVDGVTKLDKV---------------VLGNAAEG 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 233 TVKWELEDLSFAILH 247
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 285 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 335
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 336 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 395
Query: 530 LYKETGNK 537
YKE +
Sbjct: 396 RYKEAKGR 403
>gi|452124129|ref|ZP_21936713.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|452127514|ref|ZP_21940095.1| GTP pyrophosphokinase [Bordetella holmesii H558]
gi|451923359|gb|EMD73500.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|451926794|gb|EMD76924.1| GTP pyrophosphokinase [Bordetella holmesii H558]
Length = 748
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIRGEVSGRPKHIYSIWNKMRLKRLDFSQMYDLRALRIIVDD---------VRDCYAALA 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW+P+ EFDDYI PKP+GY+SLHT V G A EVQIRT +MH++AE+G+AAH
Sbjct: 302 LVHELWVPLQDEFDDYISRPKPNGYRSLHTVVADQQGRAFEVQIRTHEMHQFAEYGMAAH 361
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE G++ +++ + D
Sbjct: 362 WRYKEAGSRGGQVTASSDYD 381
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLI 233
EFG EVA+LV G L + + R+ + G+ + R MLL M D R+VL+
Sbjct: 103 EFGAEVARLVQGARALLRLGIVARQASDSAADTGSQKEMQ----RKMLLAMAADLRIVLM 158
Query: 234 KLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
+LA RL ++R + + AQETL ++ LA+RLG+W LK ELEDL F L
Sbjct: 159 RLASRLQSLRWHAETKTPCSASFAQETLDLYTPLANRLGIWQLKWELEDLSFRFL 213
>gi|443673223|ref|ZP_21138292.1| GTP pyrophosphokinase/guanosine-3',5'-bis (Diphosphate)
3-pyrophosphohydrolase [Rhodococcus sp. AW25M09]
gi|443414186|emb|CCQ16630.1| GTP pyrophosphokinase/guanosine-3',5'-bis (Diphosphate)
3-pyrophosphohydrolase [Rhodococcus sp. AW25M09]
Length = 824
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 110/194 (56%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H Q RK+GDPY+TH + ILA L T+VA
Sbjct: 113 YPKADLALLQRAYDVADELHASQMRKSGDPYITHPLAVANILAEL-----GMDTTTLVAA 167
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + EEFGDEV+ LV GV++L V GT E
Sbjct: 168 LLHDTVEDTGYSLAKLTEEFGDEVSHLVDGVTKLD------------KVVLGTAA--EGE 213
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 214 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKAKETLEVIAPLAHRLGMAT 273
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 274 VKWELEDLAFAILH 287
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 325 ISAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 375
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE G+AAHW
Sbjct: 376 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTRDMHRTAEFGIAAHW 435
Query: 530 LYKET-GNKLQSISSMDE 546
YKET G Q + +D+
Sbjct: 436 RYKETKGRHSQDNTEVDD 453
>gi|410724219|ref|ZP_11363418.1| (p)ppGpp synthetase, RelA/SpoT family [Clostridium sp. Maddingley
MBC34-26]
gi|410602505|gb|EKQ56985.1| (p)ppGpp synthetase, RelA/SpoT family [Clostridium sp. Maddingley
MBC34-26]
Length = 738
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 14/188 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA++AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV++D
Sbjct: 21 VEKAYHFAEQAHKDQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVIED 75
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + F E+A LV GV++L+ + ++ + T ++A+++R MLL
Sbjct: 76 TDCSYDETVKLFNAEIANLVEGVTKLTKLGEMEYK---------TKEEQQADNVRKMLLA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELEDL
Sbjct: 127 MAKDIRVIIIKLADRLHNMRTLKFMPEKKQKNKAKETLDIYAPLAHRLGMSKIKWELEDL 186
Query: 284 CFAVLQMR 291
CF L +
Sbjct: 187 CFRYLHEK 194
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIHSDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLV---------HSVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|110833037|ref|YP_691896.1| GTP pyrophosphokinase [Alcanivorax borkumensis SK2]
gi|110646148|emb|CAL15624.1| GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Alcanivorax borkumensis SK2]
Length = 703
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 18/215 (8%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV A FA++AH GQ+R+TGDPY+TH + IL + +++A +LHDV++
Sbjct: 22 QVVHAYHFAEQAHEGQYRRTGDPYITHPLAVANILTDMHMDHA-----SLMAAMLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S + EF +EVA+LV GVS+++ I + ++A +LR M+L
Sbjct: 77 DTGISKEQLANEFSEEVAELVDGVSKIAQIKF------------ESKAEQQAENLRKMML 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNMRT++ + K R +A ETL ++ +A RLG++ ++ E ED
Sbjct: 125 AMTRDIRVILIKLADRLHNMRTLHVMRAEKRRRIATETLELYAPIAFRLGMYNMRVEYED 184
Query: 283 LCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
L F A+ MRA L + R ++TI +S
Sbjct: 185 LAFHAIYPMRAKLIGQAVKKARGNRKEILSTIKTS 219
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K L+SI+ KM+ + + D R++V + CY +L
Sbjct: 228 GIEARVLGREKHLFSIYCKMKEQHKPFVDIMDVFGFRIIVD---------RVDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H + PI G F DYI PK +GYQSLHT ++ G LE+QIRT++M A +G+AAH
Sbjct: 279 AAHNYFTPIPGRFKDYIAIPKANGYQSLHTTLKARSGIPLEMQIRTEEMEAMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|71908440|ref|YP_286027.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
gi|71848061|gb|AAZ47557.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
Length = 740
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 12/140 (8%)
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
+ G EV R K +YSI++KMR+KDV +VYD RALR++V D ++ CY+
Sbjct: 255 VKGAEVY--GRPKHIYSIWNKMRKKDVEFSEVYDVRALRIIVDD---------LKDCYTA 303
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L IVH LW+PI EFDDYI NPK + Y+SLHTAV+ PDG +LE+QIRT +MH++AE G+A
Sbjct: 304 LGIVHNLWLPIPREFDDYISNPKGNYYRSLHTAVRCPDGRSLEIQIRTAEMHKHAELGVA 363
Query: 527 AHWLYKETGNKLQSISSMDE 546
AHW YKE G+K + DE
Sbjct: 364 AHWRYKE-GSKRTTEDDYDE 382
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 13/209 (6%)
Query: 86 FIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSG 145
F+V D G P + E+++KA+ +A + + +G+ +H + I+A L
Sbjct: 17 FLVTLTD--GVPPADAERLKKAVEYAWEVYGDRTLGSGERIWSHALGMAVIIAGL----- 69
Query: 146 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 205
K V++ +A +L + + SIE FG A LV G+SRL+ + + + IN+
Sbjct: 70 KLDVESRIAAVLFAIPSHDEHGITSIESRFGKPAAHLVHGISRLNRLRPITKGFVAINIE 129
Query: 206 QGTLGHEEAND----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARA-VAQET 260
G + E LR MLL MV+D RVVL++LA R +R YA P + R VA+ET
Sbjct: 130 AGEINPAEMKAQVEVLRKMLLAMVEDIRVVLLRLASRTQTLR-FYAAHPDELRVQVARET 188
Query: 261 LLIWCSLASRLGLWALKAELEDLCFAVLQ 289
L ++ LA+RLG+W LK ELEDL F +
Sbjct: 189 LELYSPLANRLGVWELKWELEDLSFRFIH 217
>gi|145636799|ref|ZP_01792465.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittHH]
gi|145270097|gb|EDK10034.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittHH]
Length = 704
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYEIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|218246275|ref|YP_002371646.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 8801]
gi|257059322|ref|YP_003137210.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 8802]
gi|218166753|gb|ACK65490.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 8801]
gi|256589488|gb|ACV00375.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 8802]
Length = 743
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 20/196 (10%)
Query: 100 NDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
N E++ +A FA + H GQ+RK+G+PY+ H I +L L G +A+ + AG
Sbjct: 32 NSEEISLICRAFNFAYQLHEGQYRKSGEPYIAHPIAVAGLLRDL---GGDKAM--IAAGF 86
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D ++ IEE FG EV +LV GV++LS + N + T +A +
Sbjct: 87 LHDVVEDTDVTVEQIEENFGSEVRQLVEGVTKLS----------KFNFSSKT--EHQAEN 134
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M L M D RV+++KLADRLHNMRT+ L P K +A+ET I+ LA+RLG+W
Sbjct: 135 FRRMFLAMAKDIRVIVVKLADRLHNMRTLEHLKPEKQERIARETKEIFAPLANRLGIWRF 194
Query: 277 KAELEDLCFAVLQMRA 292
K ELEDL F L+ A
Sbjct: 195 KWELEDLSFKYLEPEA 210
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V L R K LY I+ KM+R+ G +++YD ALR++V + + CY L +VH
Sbjct: 248 VELQGRPKHLYGIYHKMQRQQKGFNQIYDIAALRIIVKNN---------EDCYRALAVVH 298
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW Y
Sbjct: 299 DAFKPIPGRFKDYIGLPKPNRYQSLHTTVVGLTGRPLEVQIRTLEMHHIAEYGIAAHWKY 358
Query: 532 KETG 535
KETG
Sbjct: 359 KETG 362
>gi|410657483|ref|YP_006909854.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. DCA]
gi|410660520|ref|YP_006912891.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. CF]
gi|409019838|gb|AFV01869.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. DCA]
gi|409022876|gb|AFV04906.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalobacter sp. CF]
Length = 722
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 17/191 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+N E++++A +A+ AH GQ R +G+ Y+ H + ILA L T++A +LH
Sbjct: 17 YNLEKIEEAYEYAELAHRGQLRNSGEKYIYHPLEVASILAELEMDDS-----TIIAALLH 71
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DV +D +LG I + FGDEVA LV GV++L I+ ++ V + +LR
Sbjct: 72 DVAEDTNRTLGDIRKNFGDEVAGLVDGVTKLGKISY----KSKVEV--------QVENLR 119
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M L M D RV+LIKLADRLHNMRT+ +K + +AQET+ I+ LA+RLG++ +K
Sbjct: 120 KMFLAMAKDIRVILIKLADRLHNMRTLKYQSESKQKEIAQETIEIYAPLANRLGIFRIKW 179
Query: 279 ELEDLCFAVLQ 289
ELEDL F L
Sbjct: 180 ELEDLAFRYLH 190
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K +SI+ KM ++ + +++D A+RV+V + CY L
Sbjct: 227 GIEADIAGRPKHFFSIYKKMLDQNKDLSEIFDLTAVRVIV---------KTVNDCYGALG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H LW PI G F DYI PKP+ YQSLHT + G G E+QIRT +MH AE+G+AAH
Sbjct: 278 VIHTLWKPIPGRFKDYIAMPKPNMYQSLHTTLIGNHGDPFEIQIRTWEMHRTAEYGIAAH 337
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDLF 570
W YKE G K++S S I + D+ D L DLF
Sbjct: 338 WKYKE-GKKIESNFEQKLSWIRQLLEVQHDSKDDAGEFMESLKIDLF 383
>gi|397679802|ref|YP_006521337.1| GTP pyrophosphokinase [Mycobacterium massiliense str. GO 06]
gi|395458067|gb|AFN63730.1| putative GTP pyrophosphokinase [Mycobacterium massiliense str. GO
06]
Length = 783
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 68 YPKADRSVLQRAYEVAESRHAEQFRKSGDPYITHPVAVANILAELGMDT-----TTLVAA 122
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
ILHD V+D SL + EFG EVA LV GV++L + LG+ E
Sbjct: 123 ILHDTVEDTGYSLEQLTAEFGTEVAHLVDGVTKLDKV---------------VLGNAAEG 167
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 168 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 227
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 228 TVKWELEDLSFAILH 242
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 280 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 330
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 331 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 390
Query: 530 LYKETGNK 537
YKE +
Sbjct: 391 RYKEAKGR 398
>gi|145639714|ref|ZP_01795317.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittII]
gi|145271271|gb|EDK11185.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
PittII]
gi|309750683|gb|ADO80667.1| (p)ppGpp synthetase II/ guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Haemophilus influenzae R2866]
Length = 704
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYEIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYCVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|443491121|ref|YP_007369268.1| GTP pyrophosphokinase RelA [Mycobacterium liflandii 128FXT]
gi|442583618|gb|AGC62761.1| GTP pyrophosphokinase RelA [Mycobacterium liflandii 128FXT]
Length = 787
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H GQFR +GDPY+TH + ILA L S T+VA
Sbjct: 72 YPKADLSLLQRAYEVADQRHAGQFRHSGDPYITHPLAVANILAELGMDS-----TTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 171
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 172 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 232 SVKWELEDLSFAILH 246
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IIATLSASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
>gi|431381389|ref|ZP_19510991.1| RelA/SpoT family protein [Enterococcus faecium E1627]
gi|430581751|gb|ELB20189.1| RelA/SpoT family protein [Enterococcus faecium E1627]
Length = 737
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA +A AH GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VEKACEYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----KMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFGD+VA LV GV++L I HEE A + R ML
Sbjct: 83 TEITLEDLREEFGDDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVLQ 289
D L
Sbjct: 189 DTALRYLN 196
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L
Sbjct: 233 GIFAEIYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAH
Sbjct: 284 AIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAH 343
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 344 WAYKEGKNE 352
>gi|125605857|gb|EAZ44893.1| hypothetical protein OsJ_29534 [Oryza sativa Japonica Group]
Length = 1130
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 122/203 (60%), Gaps = 14/203 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF++E V K A++AH GQ R +GDPYL HC+ T +LA + +S V AG
Sbjct: 625 HRIFHEELVVKTFFEAEKAHRGQTRASGDPYLQHCVETAVLLANIGANST-----VVSAG 679
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I FG VA LV GVS+LS++++L R N EA+
Sbjct: 680 LLHDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRIVEAD 733
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L MLL M D R VLIKLADR+HNM+T+ ALP K + A+ET+ I+ LA+RLG+ +
Sbjct: 734 RLHTMLLAMAD-ARAVLIKLADRVHNMKTLEALPLGKQQRFAKETMEIFVPLANRLGIAS 792
Query: 276 LKAELEDLCFAVL--QMRADLAS 296
K +LE+LCF L + DL+S
Sbjct: 793 WKDQLENLCFKHLNPEEHKDLSS 815
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R KSLYSI +KM +K++ + +++D LR+V + CY LD+VH
Sbjct: 846 NLSGRHKSLYSIHNKMLKKNLTMDEIHDIHGLRLVFEKEED---------CYRALDVVHE 896
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI PK +GY+SLHT V + EVQIRT++MH AE+G AAHW YK
Sbjct: 897 LWPQVPGRFKDYISRPKLNGYRSLHTVVMSENVHPFEVQIRTKEMHLQAEYGFAAHWRYK 956
Query: 533 E 533
E
Sbjct: 957 E 957
>gi|159900988|ref|YP_001547235.1| (p)ppGpp synthetase I SpoT/RelA [Herpetosiphon aurantiacus DSM 785]
gi|159894027|gb|ABX07107.1| (p)ppGpp synthetase I, SpoT/RelA [Herpetosiphon aurantiacus DSM
785]
Length = 751
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 17/192 (8%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T +P+ + +++A AK AH Q RK+G+PY H + IL + K ++V
Sbjct: 46 TYWPLDEFQLIERAWDVAKVAHAPQIRKSGEPYFLHPVQVAHILVDM-----KLDPESVA 100
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHDVV+D +L I +FG EVA +V GV++LS + ++ +
Sbjct: 101 AALLHDVVEDTPITLEQIRADFGREVAHIVDGVTKLS------------KLEAKSIEEAQ 148
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A R M + M DDPRVVLIKLADRLHNMRT+ A+ P K + +A+ETL ++ LA RLG+
Sbjct: 149 AITYRKMFIAMADDPRVVLIKLADRLHNMRTLGAMRPDKQQRIARETLEVYAPLAHRLGI 208
Query: 274 WALKAELEDLCF 285
W K ELEDL F
Sbjct: 209 WQFKWELEDLSF 220
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 81/130 (62%), Gaps = 10/130 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R K +YSI KM RK V + ++YD A+RV+V ++ CY +L
Sbjct: 261 NIKAEVTGRPKHIYSIARKMERKSVSLDQIYDQLAVRVMVN---------SVDECYRVLG 311
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH WIPI EFDDYI PK S Y+SLHT V P EVQIRT +MHE +E+G+AAH
Sbjct: 312 LVHSTWIPIMSEFDDYIAVPKESMYRSLHTTVVIPGEQPCEVQIRTYEMHEVSEYGIAAH 371
Query: 529 WLYKET-GNK 537
W YKE GNK
Sbjct: 372 WRYKEGFGNK 381
>gi|73540969|ref|YP_295489.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
gi|72118382|gb|AAZ60645.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
Length = 741
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 239 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 289
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 290 IVHHIWQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 349
Query: 529 WLYKETGNK 537
W YKE G+K
Sbjct: 350 WRYKEAGSK 358
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 9/199 (4%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G P + + V++A+A+ + TG+P L+H RIL L RA
Sbjct: 11 VAGVP--DADMVERALAYVREQAGDAVLPTGEPVLSHAEGMLRILDGLRVDDAARA---- 64
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH--RRINVNQGTLG 210
A L + + A IE FG++V ++V GV +L I + H + + N
Sbjct: 65 -ACCLFPLAEFAPAVEPEIEARFGEDVCRMVKGVRQLLRIGAIAGGHDAQEASRNVAQAR 123
Query: 211 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 270
HE+ LR MLL D RVVL++LA RL ++R + +A+ETL I+ LA+R
Sbjct: 124 HEQVEALRKMLLAFAQDIRVVLVRLASRLQSLRWLAQNKREPLPGIARETLDIYAPLANR 183
Query: 271 LGLWALKAELEDLCFAVLQ 289
LG+W +K ELEDL F Q
Sbjct: 184 LGIWQMKWELEDLAFRFEQ 202
>gi|256619448|ref|ZP_05476294.1| RelA/SpoT protein [Enterococcus faecalis ATCC 4200]
gi|256598975|gb|EEU18151.1| RelA/SpoT protein [Enterococcus faecalis ATCC 4200]
Length = 737
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENYRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|374370980|ref|ZP_09628969.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
gi|373097537|gb|EHP38669.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
Length = 717
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +
Sbjct: 222 VSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHI 272
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI PK +GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE
Sbjct: 273 WQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTQEMHHFAEYGVAAHWRYKE 332
Query: 534 TGNK 537
G+K
Sbjct: 333 AGSK 336
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A+AF + TG+ L+H RIL G R D A +
Sbjct: 20 VERALAFVRERGSAALLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFALAA 73
Query: 164 ACE-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR---RINVNQGTLGHEEANDLRV 219
S IE FG+EVA LV GV +L I + H ++ E+ LR
Sbjct: 74 FVPGSEVEIEPLFGEEVAGLVKGVRQLLRIGAIAVGHSGAPETTKDEIAARQEQVEALRK 133
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVVL++LA RL +R LA+RLG+W +K E
Sbjct: 134 MLLAFAQDIRVVLVRLASRLQTLR-----------------------LANRLGIWQMKWE 170
Query: 280 LEDLCFAVLQ 289
LEDL F Q
Sbjct: 171 LEDLAFRFEQ 180
>gi|269792823|ref|YP_003317727.1| (p)ppGpp synthetase I SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100458|gb|ACZ19445.1| (p)ppGpp synthetase I, SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 756
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E LS R K YSI+ KMRRK++ + ++YD ALRV+VG + CY +L
Sbjct: 264 GIEAYLSGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVIVG---------TVAECYQVLG 314
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 315 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGVAAH 374
Query: 529 WLYKETGNKLQSI 541
W YKE ++ I
Sbjct: 375 WHYKEGKRRVDQI 387
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 17/187 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A+ FA AH Q R +G+PY+ H I ILA + V+T+ A +LHDV++
Sbjct: 58 KLGEALVFAANAHREQRRHSGEPYIVHSISVAAILADM-----GLDVETLSAALLHDVLE 112
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + FG+ V +V GV++L + ++ +A +LR M L
Sbjct: 113 DTEVGKEEMLSRFGEGVLTMVDGVTKLG------------KLAFKSMEDYQAENLRKMFL 160
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RVVLIKLADRLHNMRT+ A K +A+ETL I+ LA RLG++ +K ELED
Sbjct: 161 VMAKDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETLEIYAPLAHRLGIYNVKRELED 220
Query: 283 LCFAVLQ 289
LCF +L+
Sbjct: 221 LCFKILE 227
>gi|183982138|ref|YP_001850429.1| GTP pyrophosphokinase RelA [Mycobacterium marinum M]
gi|183175464|gb|ACC40574.1| GTP pyrophosphokinase RelA [Mycobacterium marinum M]
Length = 787
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H GQFR +GDPY+TH + ILA L S T+VA
Sbjct: 72 YPKADLSLLQRAYEVADQRHAGQFRHSGDPYITHPLAVANILAELGMDS-----TTLVAA 126
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 171
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 172 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 232 SVKWELEDLSFAILH 246
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IIATLSASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
>gi|423204628|ref|ZP_17191184.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AMC34]
gi|404625952|gb|EKB22763.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AMC34]
Length = 705
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLKQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FGD VA+LVAGVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTPITKADLAEQFGDAVAELVAGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
+L F A+ MR+ + R R G R I + S
Sbjct: 184 ELGFEALYPMRSRVLRESVRRAR-GNRREIIDSIQS 218
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIEHQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVKVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|418248009|ref|ZP_12874395.1| GTP pyrophosphokinase [Mycobacterium abscessus 47J26]
gi|420931950|ref|ZP_15395225.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-151-0930]
gi|420938274|ref|ZP_15401543.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-152-0914]
gi|420942202|ref|ZP_15405459.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-153-0915]
gi|420948462|ref|ZP_15411712.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-154-0310]
gi|420952453|ref|ZP_15415697.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0626]
gi|420956623|ref|ZP_15419860.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0107]
gi|420962459|ref|ZP_15425684.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-1231]
gi|420992584|ref|ZP_15455731.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0307]
gi|420998431|ref|ZP_15461568.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0912-R]
gi|421002870|ref|ZP_15465994.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0912-S]
gi|353452502|gb|EHC00896.1| GTP pyrophosphokinase [Mycobacterium abscessus 47J26]
gi|392136709|gb|EIU62446.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-151-0930]
gi|392143789|gb|EIU69514.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-152-0914]
gi|392149629|gb|EIU75343.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-153-0915]
gi|392155492|gb|EIU81198.1| GTP pyrophosphokinase [Mycobacterium massiliense 1S-154-0310]
gi|392157765|gb|EIU83462.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0626]
gi|392185368|gb|EIV11017.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0307]
gi|392186243|gb|EIV11890.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0912-R]
gi|392194328|gb|EIV19948.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0912-S]
gi|392249924|gb|EIV75399.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-1231]
gi|392253522|gb|EIV78990.1| GTP pyrophosphokinase [Mycobacterium massiliense 2B-0107]
Length = 788
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H QFRK+GDPY+TH + ILA L + T+VA
Sbjct: 73 YPKADRSVLQRAYEVAESRHAEQFRKSGDPYITHPVAVANILAELGMDT-----TTLVAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
ILHD V+D SL + EFG EVA LV GV++L + LG+ E
Sbjct: 128 ILHDTVEDTGYSLEQLTAEFGTEVAHLVDGVTKLDKV---------------VLGNAAEG 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 233 TVKWELEDLSFAILH 247
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 285 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 335
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE+G+AAHW
Sbjct: 336 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHW 395
Query: 530 LYKETGNK 537
YKE +
Sbjct: 396 RYKEAKGR 403
>gi|339325467|ref|YP_004685160.1| GTP pyrophosphokinase [Cupriavidus necator N-1]
gi|338165624|gb|AEI76679.1| GTP pyrophosphokinase RelA [Cupriavidus necator N-1]
Length = 742
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 363 LHDLAKSSEA----QKKAKVVQDAGIALTSLVACE-EALEKELLISTSYIPGMEVTLSSR 417
L DLA E ++ AK++ + I +A E L+ EL +T+ IP +S R
Sbjct: 196 LEDLAFRFEQPDTYKRIAKLLDEKRIEREGYIASAIERLQSEL--ATAGIPA---EVSGR 250
Query: 418 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 477
K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +W PI
Sbjct: 251 PKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHIWQPI 301
Query: 478 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 537
EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G++
Sbjct: 302 PREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAHWRYKEAGSR 361
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 101/211 (47%), Gaps = 14/211 (6%)
Query: 87 IVDGVDVTGY--PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+V D+TG I + E V++A+A+ + TG+ L+H RIL
Sbjct: 1 MVTSTDLTGRVAGIPDAELVERALAYVREHGAEVALPTGETVLSHAQGMLRIL------D 54
Query: 145 GKRAVDTVVAGI-LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI- 202
G R D A L +V + I FGDEVA+LV GV +L I +
Sbjct: 55 GLRVDDAARAAACLFGLVAFVPGTEAEIAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAE 114
Query: 203 ----NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 258
+ N+ HE+ LR MLL D RVVL++LA RL +R + A VA+
Sbjct: 115 PAAPSKNEAQARHEQVEALRKMLLAFAQDIRVVLVRLASRLQTLRWMAETKQAPQPGVAR 174
Query: 259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
ETL I+ LA+RLG+W +K ELEDL F Q
Sbjct: 175 ETLDIYAPLANRLGIWQMKWELEDLAFRFEQ 205
>gi|345430563|ref|YP_004823685.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Haemophilus
parainfluenzae T3T1]
gi|301156628|emb|CBW16099.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Haemophilus
parainfluenzae T3T1]
Length = 706
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A + +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAEMHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
++A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 IMAALLHDVIEDTPYTESQLKDEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQMR 291
G+ +K ELEDL F + R
Sbjct: 174 GIEHIKNELEDLSFEAMHPR 193
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LY I+ KMR KD H + D A RV+V ++ CY L
Sbjct: 228 GIPSRIWGREKHLYKIYQKMRMKDQKFHSIMDIYAFRVIVN---------SVDDCYRGLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G+ DYI P+ +GYQ+L T++ GP G +EV ++T++M + AE G+ AH
Sbjct: 279 QMHSLYKPRPGKVKDYIAVPRANGYQALQTSMIGPHGVPVEVHLQTEEMEQVAEMGVTAH 338
Query: 529 WLYKETG 535
W+YKE G
Sbjct: 339 WVYKEGG 345
>gi|289578226|ref|YP_003476853.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter italicus Ab9]
gi|289527939|gb|ADD02291.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter italicus Ab9]
Length = 719
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 112/190 (58%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + K+ FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLDLIYKSYDFAVNAHDGQMRNSGEPYIVHPIEVSYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E+FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKECYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W YKE T +K S +E L + L DLF
Sbjct: 338 WKYKEGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|399545685|ref|YP_006558993.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
gi|399161017|gb|AFP31580.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
Length = 743
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 19/181 (10%)
Query: 361 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 419
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGSA-----GIKGDVSGRVK 266
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L +VH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGVVHGLWRHIPN 317
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 539
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT+ MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTRDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 540 S 540
S
Sbjct: 378 S 378
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 131 IHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 190
I R+LA L ++ A +L+ V + +L ++ +EFGDEVA L+ GV +++
Sbjct: 69 IEMARVLAELHLDQA-----SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLIKGVLQMA 123
Query: 191 YINQLLRRHRRINVNQGTLGHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL 248
I+ + H + N LG E +++R ML+ MVDD RV LIKLA+R +R +
Sbjct: 124 AISSI---HHPLKGN--VLGQSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDA 178
Query: 249 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRA--DLASMWSPR--NRV 304
P K VA+E I+ LA RLG+ +K ELEDL F L A +A + + NR
Sbjct: 179 LPEKRMRVAREVFEIYAPLAHRLGIGYIKWELEDLSFRYLHETAYKKIAKLLDEKRLNRE 238
Query: 305 GYSRRITTIVSS 316
Y +R+ + S
Sbjct: 239 SYIKRVVAALES 250
>gi|284928658|ref|YP_003421180.1| (p)ppGpp synthetase, RelA/SpoT family [cyanobacterium UCYN-A]
gi|284809117|gb|ADB94822.1| (p)ppGpp synthetase, RelA/SpoT family [cyanobacterium UCYN-A]
Length = 745
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 19/197 (9%)
Query: 98 IFNDEQ--VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
I+N Q + A FA + H GQ+RK+G+PY+ H + IL L G +++ + AG
Sbjct: 31 IYNQNQDLICHAFDFAYQLHKGQYRKSGEPYIVHPVTVAGILRDL---GGDKSM--IAAG 85
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D + +IEE FG EV LV GV++LS + N + T ++A
Sbjct: 86 FLHDVVEDTDITADNIEEMFGQEVRLLVEGVTKLS----------KFNFSNKT--EQQAE 133
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R M L M D RV+++KLADRLHNMRT+ AL P K + +A ET I+ LA+RLG+W
Sbjct: 134 NFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALKPEKQKRIALETKEIFSPLANRLGIWR 193
Query: 276 LKAELEDLCFAVLQMRA 292
+K ELEDL F L+ A
Sbjct: 194 VKWELEDLSFKYLETNA 210
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 10/128 (7%)
Query: 409 GMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
G++V L R K LY I+ KM ++ G H++YD ALR++V +K + CY L
Sbjct: 244 GIQVLELQGRSKHLYGIYYKMHSQNKGFHEIYDLAALRIIVQNK---------EECYRAL 294
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
+VH + P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +MH AE+G+AA
Sbjct: 295 AVVHDTFKPMPGRFKDYIGLPKPNRYQSLHTTVVGFNGRPLEIQIRTLEMHHIAEYGIAA 354
Query: 528 HWLYKETG 535
HW YKETG
Sbjct: 355 HWKYKETG 362
>gi|168333633|ref|ZP_02691893.1| (p)ppGpp synthetase I, SpoT/RelA [Epulopiscium sp. 'N.t. morphotype
B']
Length = 740
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 13/183 (7%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH+GQ RK+G+PY+ H + +ILA L + ++++ AG+LHDVV+D
Sbjct: 24 IEKAYDIASNAHNGQLRKSGEPYIIHPLGVAKILADL-----ELDIESITAGLLHDVVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDLRVMLL 222
+L IE F EVA LV GV++LS I + H + N+ E + + R M +
Sbjct: 79 TSMTLEDIELNFNKEVALLVDGVTKLSQI----KYH---STNKKVQKEELQVENYRKMFI 131
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RVVLIKLADRLHNM+T+ + P K +A+A+ET+ I+ +A+RLG+ LKAELED
Sbjct: 132 AMAQDIRVVLIKLADRLHNMQTLKYMIPEKQQAIARETMDIYAPIANRLGICKLKAELED 191
Query: 283 LCF 285
L
Sbjct: 192 LSL 194
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +SI+ K+ ++ I ++YD A+R +V D ++ CY +L
Sbjct: 235 GIKANVEGRPKHFFSIYKKLVNQNKTIDQIYDLFAVRAIVED---------VKDCYGVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+ H ++ PI G F DYI PKP+ YQSLHT + GP+G E+QIRT +MH AE+G+AAH
Sbjct: 286 VAHDIFTPIPGRFKDYIAMPKPNMYQSLHTTLMGPNGVPFELQIRTMEMHRTAEYGIAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WKYKE 350
>gi|395762127|ref|ZP_10442796.1| GTP pyrophosphokinase [Janthinobacterium lividum PAMC 25724]
Length = 750
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI++KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 250 GIEAEVFGRPKHIYSIWNKMRGKELDFTALYDVRAFRVIVAD---------VKTCYTVLG 300
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAH
Sbjct: 301 VVHNVWTPIPKEFDDYISRPKANGYQSLHTVVTAEDGRPLEVQIRTNEMHSFAEYGVAAH 360
Query: 529 WLYKETGNKLQSISSMDE 546
W YKE G + DE
Sbjct: 361 WRYKEEGGSNFAGQKYDE 378
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G + +V A+A+A A+ + G L I LA L + +T
Sbjct: 16 VEGLSAPDSARVLDALAYATEAYGDKQTFAGCSALEFAIGVATTLAFL-----RSDAETR 70
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
+AG++ ++ ++ IE FG +V L GV +L + L + +G +
Sbjct: 71 IAGLMFELTMLDPDTAADIEPRFGKQVCDLATGVRQLIRLRALTQAQHGSAAGRGKNAAQ 130
Query: 213 EA----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLIWCS 266
+A LR MLL M D RVVL++LA + +R L R +ETL ++
Sbjct: 131 QAVAQVETLRKMLLAMASDMRVVLVRLAACVTTLRYFAEIKLFNDMTREYGKETLDLYAP 190
Query: 267 LASRLGLWALKAELEDLCFAVLQMRA 292
LA+RLG+W LK ELEDL F ++ A
Sbjct: 191 LANRLGIWQLKWELEDLSFRFIEPEA 216
>gi|359766961|ref|ZP_09270755.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia polyisoprenivorans NBRC
16320]
gi|359315589|dbj|GAB23588.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia polyisoprenivorans NBRC
16320]
Length = 806
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQ RK+GDPY+TH + ILA L G + T+VA
Sbjct: 91 YPKADVALLQRAYDVADERHQGQNRKSGDPYITHPLAVATILADL----GMDTI-TLVAA 145
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E EFG EVA LV GV++L + LG EA
Sbjct: 146 LLHDTVEDTGYSLEQLESEFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 190
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 191 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 250
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 251 TVKWELEDLSFAILH 265
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 306 TVEGRPKHYWSIYQKMIVKGREFDDIHDLVGMRILCDE---------VRDCYAAVGVVHS 356
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW YK
Sbjct: 357 LWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTYDMHRTAEFGIAAHWRYK 416
Query: 533 ETGNKLQSISSMDESDIE 550
E+G K + D ++++
Sbjct: 417 ESGYKDRKGRKSDVAEVD 434
>gi|118617353|ref|YP_905685.1| GTP pyrophosphokinase RelA [Mycobacterium ulcerans Agy99]
gi|118569463|gb|ABL04214.1| GTP pyrophosphokinase RelA [Mycobacterium ulcerans Agy99]
Length = 790
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H GQFR +GDPY+TH + ILA L S T+VA
Sbjct: 75 YPKADLSLLQRAYEVADQRHAGQFRHSGDPYITHPLAVANILAELGMDS-----TTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 130 LLHDTVEDTGYTLEALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 235 SVKWELEDLSFAILH 249
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IIATLSASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 328
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ Y+SLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYESLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
>gi|152978696|ref|YP_001344325.1| (p)ppGpp synthetase I SpoT/RelA [Actinobacillus succinogenes 130Z]
gi|150840419|gb|ABR74390.1| (p)ppGpp synthetase I, SpoT/RelA [Actinobacillus succinogenes 130Z]
Length = 620
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A A+ AH GQFR +G+PY+TH + I+A + + + V+A +LHDV+
Sbjct: 21 ESVKRAFLIARDAHEGQFRSSGEPYITHPVAVAAIIAQM-----RLDHEAVMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + EFG VA++V GVS+L ++L R R+ +A R M+
Sbjct: 76 EDTPYTENQLAAEFGQNVAEIVDGVSKL---DKLKFRTRQ---------EAQAESFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ +A RLG+ +K ELE
Sbjct: 124 LAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPIAHRLGIEHVKNELE 183
Query: 282 DLCFAVLQ 289
DLCF +
Sbjct: 184 DLCFQAMH 191
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E LE+ L +YIP + R K LY I+ +R+++ + D RVVV
Sbjct: 218 EELEQRL--RAAYIPS---RVYGREKPLYYIYKSLRQREQKFRSILDIYNFRVVVT---- 268
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
+ CY L +H + P G+ DYI PK +GYQ+LHT GP G + VQIR
Sbjct: 269 -----TVDDCYRALGCIHSFYKPRPGQIKDYIAVPKSNGYQALHTFTIGPKGVPVAVQIR 323
Query: 514 TQKMHEYAEHGLAAHWLYKETG 535
T++M + A+ G+ AHW+YK+ G
Sbjct: 324 TEEMDQIAKMGVTAHWVYKQDG 345
>gi|453364898|dbj|GAC79531.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia malaquae NBRC 108250]
Length = 738
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 115/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A++ H GQFRK+GDPY+TH + ILA L + T+VA
Sbjct: 24 YPKADVTVLQQAYDVAEQRHTGQFRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 78
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E++FG EVA LV GV++L + LG E
Sbjct: 79 LLHDTVEDTGYSLEELEKDFGAEVAHLVDGVTKLDKV---------------ALGSAAEG 123
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 124 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 183
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 184 TVKWELEDLSFAILH 198
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 13/141 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T+ R K +SI+ KM + ++D +RV+ + ++ CY+ + +
Sbjct: 236 IEATVEGRPKHYWSIYQKMIVRGKDFDDIHDLVGMRVLCDE---------VRDCYAAIGV 286
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P YQSLHT V GP+G LE+QIRT +MH AE G+AAHW
Sbjct: 287 VHSLWQPMAGRFKDYIAQPSFGVYQSLHTTVIGPEGKPLEIQIRTVEMHRTAEFGIAAHW 346
Query: 530 LYKE----TGNKLQSISSMDE 546
YKE G K ++ +D+
Sbjct: 347 RYKEGRKGKGRKATDVAEVDD 367
>gi|452946137|gb|EME51637.1| GTP pyrophosphokinase [Amycolatopsis decaplanina DSM 44594]
Length = 776
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 116/194 (59%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 66 HPNADLAQLQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAA 120
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL S++ +FG++V +LV GV++L V GT EA
Sbjct: 121 LLHDTVEDTGYSLESLKADFGEKVGELVDGVTKLD------------KVKLGTAA--EAE 166
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 167 TIRKMVIAMARDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMAT 226
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+LQ
Sbjct: 227 VKWELEDLAFAILQ 240
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 404 TSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
T + G +T + R K YSI KM + + ++D +R++V D ++
Sbjct: 270 TGNLEGSRITAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VR 320
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH A
Sbjct: 321 DCYAAMGVVHALWQPVPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHRTA 380
Query: 522 EHGLAAHWLYKET 534
E+G+AAHW YKET
Sbjct: 381 EYGIAAHWRYKET 393
>gi|297544507|ref|YP_003676809.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842282|gb|ADH60798.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 719
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 112/190 (58%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + K+ FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLDLIYKSYDFAVNAHDGQMRNSGEPYIVHPIEVSYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E+FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W YKE T +K S +E L + L DLF
Sbjct: 338 WKYKEGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|390559275|ref|ZP_10243626.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
gi|390174152|emb|CCF82919.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
Length = 721
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 10/182 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A FA+ AH G+FR++G+PY++H + ILA + + +T+ A +LHDVV+D
Sbjct: 17 VKQAHDFARDAHEGKFRRSGEPYISHPVEVAIILAEM-----QLDQETLAAALLHDVVED 71
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ + FGD + +LV GV++L I + + +A LR M L
Sbjct: 72 TDTTMEDLRTLFGDRIVRLVDGVTKLGRIRWAAETDHAVREKE-----RQAESLRKMFLA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MVDD RVVLIKLADRLHNMRT+ +P AK A+ET+ I+ LA+RLG+W +K+ELEDL
Sbjct: 127 MVDDVRVVLIKLADRLHNMRTLEHMPRAKQLRSAKETMEIYAPLANRLGIWQIKSELEDL 186
Query: 284 CF 285
Sbjct: 187 AL 188
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K + SI KM RK+ ++YD +RV+V +K CY L
Sbjct: 229 GIGAEISGREKHITSIARKMERKERSFDEIYDVLGIRVIVDEKKD---------CYGALG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H +W PI GEFDDY+ PK S YQS+HT V GP+G LE+QIRT +MH AE+G+AAH
Sbjct: 280 VIHSIWHPIPGEFDDYVATPKESMYQSIHTVVLGPNGHPLEIQIRTHEMHYIAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WRYKE 344
>gi|317058925|ref|ZP_07923410.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 3_1_5R]
gi|313684601|gb|EFS21436.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium sp. 3_1_5R]
Length = 725
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 110/188 (58%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V+ A A+ +H GQ+RK+G+ Y+ H I +IL L K DT++A ILHD+V
Sbjct: 21 DKVKLAYYLAEESHEGQYRKSGEAYIMHPIEVAKILVGL-----KSDTDTIIAAILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L IE FG VA LV GV++L ++ GT E ++R M+
Sbjct: 76 EDTFITLADIEYNFGKNVAHLVDGVTKLK------------SLPNGTKNQSE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + V+LIKLADRLHNMRT+ + P K A+AQETL ++ LA RLG+ +K ELE
Sbjct: 122 LAMTQNLHVILIKLADRLHNMRTLKFMKPEKQVAIAQETLEVYAPLAHRLGIAKIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L
Sbjct: 182 DLCLYYLH 189
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +YD +R++V + + CY +L
Sbjct: 226 GIKGQVKGRFKHFYSIYKKMYELGKEFDDIYDLMGVRIIVSNTSD---------CYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + P+ G F DYI PK + YQS+HT + GP +E+QIRT++M + AE G+AAH
Sbjct: 277 EVHSRYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLAKFIEIQIRTEEMDKVAEEGVAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WAYKE 341
>gi|196250100|ref|ZP_03148794.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. G11MC16]
gi|196210284|gb|EDY05049.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. G11MC16]
Length = 732
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK+AH QFRK+G+PY+ H I ILA L K T+ AG LHDVV+D
Sbjct: 28 LKKAYEFAKQAHRDQFRKSGEPYIIHPIQVAGILADL-----KMDATTIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E EFG +VA LV GV++L + + ++A + R M L
Sbjct: 83 TEATKEDLEREFGADVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMFLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|427717556|ref|YP_007065550.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 7507]
gi|427349992|gb|AFY32716.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 7507]
Length = 756
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA R H GQ+RK+G+PY+ H + +L L S+ + AG LHDVV+D
Sbjct: 44 IGEAFKFAYRLHQGQYRKSGEPYICHPVAVAGLLRDLGGSAA-----MIAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I E FG EV +LV GV++LS +IN T +A + R M L
Sbjct: 99 TDVTIEQIGELFGPEVRQLVEGVTKLS----------KINFKSKT--ESQAENFRRMFLS 146
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ +P K R +AQET I+ LA+RLG+W K ELEDL
Sbjct: 147 MAQDIRVIVVKLADRLHNMRTLQVMPDDKRRRIAQETRDIFAPLANRLGIWHFKWELEDL 206
Query: 284 CFAVLQ 289
F L+
Sbjct: 207 SFKYLE 212
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 409 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
G+E + +S R K LYSI+ KM+R+ H++YD ALR++V + CY L
Sbjct: 249 GIECLDVSGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVRTN---------EECYRAL 299
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
+VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AA
Sbjct: 300 AVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTQEMHHIAEYGIAA 359
Query: 528 HWLYKETGNKLQSISSMDESD 548
HW YKETG ++S++ SD
Sbjct: 360 HWKYKETGGS--NVSNLTTSD 378
>gi|300703877|ref|YP_003745479.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
gi|299071540|emb|CBJ42864.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
Length = 746
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 529 WLYKETGNK 537
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 115 HHGQFRK-TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173
H G R TG+P ++H T IL L + ++ A L + A ++ +IE
Sbjct: 35 HAGDHRTLTGEPLVSHARGTVAILDGL-----RVDAPSLQAAALFLLPTLAADNEKAIEP 89
Query: 174 EFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGMVDDP 228
FG EVA+LV V +L I + + NV N+ + LR MLL D
Sbjct: 90 AFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALRKMLLAFAQDI 149
Query: 229 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 150 RVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGF 206
>gi|386265632|ref|YP_005829124.1| (p)ppGpp synthetase II/ guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Haemophilus influenzae R2846]
gi|309972868|gb|ADO96069.1| (p)ppGpp synthetase II/ guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Haemophilus influenzae R2846]
Length = 704
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFLIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|407693232|ref|YP_006818021.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Actinobacillus suis H91-0380]
gi|407389289|gb|AFU19782.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Actinobacillus suis H91-0380]
Length = 568
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L ++L R R+
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGASVAEIVQGVSKL---DKLKFRTRQ---------E 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ + R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 114 AQVENFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELEDLCF VL+M D+A
Sbjct: 174 GIEHLKNELEDLCFQAMHPHRYRVLRMAIDMA 205
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVV + + CY +L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVEN---------VDNCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHSLYKPRPYKIRDYIAVPKSNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKETGNKLQSISSMDE----SDIEASSSLSKDTDDHNPLDTDLF 570
W Y E S+ + S IE S + + +DLF
Sbjct: 339 WRYTEDQTTATSVQQKAQQWLRSIIELQQSAGNSDEFIENVKSDLF 384
>gi|451336886|ref|ZP_21907438.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Amycolatopsis azurea
DSM 43854]
gi|449420535|gb|EMD26011.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Amycolatopsis azurea
DSM 43854]
Length = 776
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 116/194 (59%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 66 HPNADLAQLQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAA 120
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL S++ +FG++V +LV GV++L V GT EA
Sbjct: 121 LLHDTVEDTGYSLESLKADFGEKVGELVDGVTKLD------------KVKLGTAA--EAE 166
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 167 TIRKMVIAMARDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMAT 226
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+LQ
Sbjct: 227 VKWELEDLAFAILQ 240
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 404 TSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
T + G +T + R K YSI KM + + ++D +R++V D ++
Sbjct: 270 TGNLEGSRITAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VR 320
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH A
Sbjct: 321 DCYAAMGVVHALWQPVPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHRTA 380
Query: 522 EHGLAAHWLYKET 534
E+G+AAHW YKET
Sbjct: 381 EYGIAAHWRYKET 393
>gi|113867356|ref|YP_725845.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
gi|113526132|emb|CAJ92477.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
Length = 742
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
E L S G+ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 232 ERLQSELATAGIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 283
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH
Sbjct: 284 -IKDCYTVLGIVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMH 342
Query: 519 EYAEHGLAAHWLYKETGNK 537
+AE+G+AAHW YKE G++
Sbjct: 343 HFAEYGVAAHWRYKEAGSR 361
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 101/211 (47%), Gaps = 14/211 (6%)
Query: 87 IVDGVDVTGY--PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+V D+TG I + E V++A+A+ + TG+ L+H RIL
Sbjct: 1 MVTSTDLTGRVAGIPDAELVERALAYVREHGAEVALPTGETVLSHAQGMLRIL------D 54
Query: 145 GKRAVDTVVAGI-LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI- 202
G R D A L +V + I FGDEVA+LV GV +L I +
Sbjct: 55 GLRVDDAARAAACLFGLVAFVPGTEAEIAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAE 114
Query: 203 ----NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 258
+ N+ HE+ LR MLL D RVVL++LA RL +R + A VA+
Sbjct: 115 PAAPSKNEAQARHEQVEALRKMLLAFAQDIRVVLVRLASRLQTLRWLAETKQAPQPGVAR 174
Query: 259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
ETL I+ LA+RLG+W +K ELEDL F Q
Sbjct: 175 ETLDIYAPLANRLGIWQMKWELEDLAFRFEQ 205
>gi|407004719|gb|EKE21022.1| hypothetical protein ACD_7C00380G0002 [uncultured bacterium]
Length = 497
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 110/187 (58%), Gaps = 16/187 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E + KA FA+++H GQ RK+G+ Y HCI T ILA + S T+ AG+LHDV
Sbjct: 25 ELIIKAFEFAEKSHQGQKRKSGEDYFKHCIATANILASIGMGS-----KTIAAGLLHDVP 79
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I++EFG+++ LV G+++L I + T +LR M
Sbjct: 80 EDTPITLTEIKKEFGEDIHNLVEGITKLGKIKL-----------KETKEEYLIENLRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RVV+IKLADRLHNMRT+ PP K +A+ET+ I+ +A RLG+ +KAELE
Sbjct: 129 LAMAADIRVVIIKLADRLHNMRTLEFNPPEKRPRIARETMEIYVPIADRLGIGEIKAELE 188
Query: 282 DLCFAVL 288
DL F +
Sbjct: 189 DLSFKFI 195
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 14/141 (9%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K+L S+F K+ ++++ I ++YD A+R+VV P + CY +L I H++
Sbjct: 239 IYGRAKNLRSLFLKLEKREMDIGRIYDLIAIRIVV---------PTVSDCYEVLGITHKV 289
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G DYI PKP+GYQS+HT + GP+G +E+QIRTQKMH+ AE G+A+HW+Y E
Sbjct: 290 YRPMVGRIKDYISLPKPNGYQSIHTTIFGPEGRIMEIQIRTQKMHDEAEFGIASHWIYSE 349
Query: 534 T-----GNKLQSISSMDESDI 549
N +S + E+++
Sbjct: 350 NKRRDWKNYFRSKETYSENEV 370
>gi|326316451|ref|YP_004234123.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373287|gb|ADX45556.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 741
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 242 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 292
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 293 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 352
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE G K +S+ E D
Sbjct: 353 AYKEAGAKGYVGVSASSEYD 372
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + +TG+ H IL + S +A +V AC
Sbjct: 27 RARAFAEPLLSAETLETGENTFAHAEAVAAILKAIGGSEAMQAASYLV---------HAC 77
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH------EEAN 215
L EE FG A L ++L + R + GH
Sbjct: 78 SHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQ-------LAGHAVDDPATHTE 130
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
++R MLL D RVV+++LA RL +R A + ++A+E L ++ SLA+RLG+W
Sbjct: 131 NVRKMLLAFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFASLANRLGIWQ 190
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL F L+
Sbjct: 191 MKWELEDLSFRFLE 204
>gi|117928545|ref|YP_873096.1| (p)ppGpp synthetase I SpoT/RelA [Acidothermus cellulolyticus 11B]
gi|117649008|gb|ABK53110.1| (p)ppGpp synthetase I, SpoT/RelA [Acidothermus cellulolyticus 11B]
Length = 820
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 111/193 (57%), Gaps = 19/193 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + VQ+A A+ H GQ R++GDPY+TH + ILA L + T+VA
Sbjct: 97 HPKADVRDVQRAYEVAEFYHRGQLRRSGDPYITHPLAVATILAELGMTP-----PTIVAA 151
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L + +FGDEVA LV GV++L V G E
Sbjct: 152 LLHDTVEDTTYTLDQLRRDFGDEVASLVDGVTKLD------------RVKYGDAATVET- 198
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV+++KLADRLHNMRT+ LPP K A+ETL I+ LA RLG+
Sbjct: 199 -VRKMVVAMARDPRVLVLKLADRLHNMRTLRYLPPEKQERKARETLEIYAPLAHRLGMNT 257
Query: 276 LKAELEDLCFAVL 288
LK ELEDL FA L
Sbjct: 258 LKWELEDLSFATL 270
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YSI+ KM + +YD +RV+V ++ CY+ L I
Sbjct: 309 IKATVTGRPKHYYSIYQKMIVRGRDFADIYDLLGVRVLVD---------TVRDCYAALGI 359
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H +W P+ G F D+I PK + YQSLHT V GP+G +EVQIRT MH AE+G+AAHW
Sbjct: 360 IHAMWNPVPGRFKDFIAMPKFNLYQSLHTTVIGPEGKPVEVQIRTHAMHRRAEYGIAAHW 419
Query: 530 LYKE 533
YKE
Sbjct: 420 KYKE 423
>gi|125563887|gb|EAZ09267.1| hypothetical protein OsI_31540 [Oryza sativa Indica Group]
Length = 533
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 121/201 (60%), Gaps = 14/201 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF +E V KA A++AH GQ R +GDPYL HC+ T +LA + +S V AG+L
Sbjct: 205 IFLEELVVKAFFEAEKAHRGQTRASGDPYLQHCVETAVLLANIGANS-----TVVSAGLL 259
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 260 HDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRIVEADRL 313
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNM+T+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 314 HTMLLAMAD-ARAVLIKLADRVHNMKTLEALPLGKQQRFAKETMEIFVPLANRLGISSWK 372
Query: 278 AELEDLCFAVL--QMRADLAS 296
+LE+LCF L + DL+S
Sbjct: 373 DQLENLCFKHLNPEEHKDLSS 393
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R KSLYSI +KM +K++ + +++D LR+V + + CY LD+VH
Sbjct: 424 NLSGRHKSLYSIHNKMLKKNLTMDEIHDIHGLRLVFEKE---------EDCYRALDVVHE 474
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
LW + G F DYI PK +GY+SLHT V + EVQIRT++MH AE+G AAHW
Sbjct: 475 LWPQVPGRFKDYISRPKLNGYRSLHTVVMSENVHPFEVQIRTKEMHLQAEYGFAAHW 531
>gi|88705448|ref|ZP_01103159.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Congregibacter litoralis KT71]
gi|88700538|gb|EAQ97646.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Congregibacter litoralis KT71]
Length = 705
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 20/204 (9%)
Query: 88 VDGVDVTGYPIFNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+D +D +++Q V++A FA++AH GQ R++G+PY+TH + ILA +
Sbjct: 4 IDSLDANLRSYLDEQQSTLVRRAYYFAEQAHFGQQRRSGEPYVTHPLAVAGILADMHMDH 63
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+++A +LHDV++D +IE +FG+ VA+LV GVS+L+ +
Sbjct: 64 -----QSLMAAMLHDVIEDTGIDKTAIESQFGEAVAELVDGVSKLT------------QI 106
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
TL ++A + + M L M D RV+L+KLADRLHNMRT+ LP AKAR +A+ETL I+
Sbjct: 107 EFDTLEEKQAENFQKMALAMARDIRVILVKLADRLHNMRTLGVLPTAKARRIAKETLDIY 166
Query: 265 CSLASRLGLWALKAELEDLCFAVL 288
+A RLG+ A++ E EDL F L
Sbjct: 167 APIAMRLGMNAVRMEFEDLGFTAL 190
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G E T+ R K LYSI+ KMR K ++ D A RVVV ++ CY +L
Sbjct: 228 GYEATVIGREKHLYSIYKKMRAKKKSFSEIMDIYAFRVVVD---------SVDSCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P+ GEF DYI PK +GYQSLHT G G +E+QIRT++M + A +G+AAH
Sbjct: 279 CIHSLYKPVPGEFKDYIAIPKANGYQSLHTVTMGMHGVPIEIQIRTREMEDMANNGIAAH 338
Query: 529 WLYK 532
WLYK
Sbjct: 339 WLYK 342
>gi|302527845|ref|ZP_07280187.1| GTP pyrophosphokinase [Streptomyces sp. AA4]
gi|302436740|gb|EFL08556.1| GTP pyrophosphokinase [Streptomyces sp. AA4]
Length = 777
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 115/194 (59%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 66 HPNSDLGQLQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAA 120
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL ++ +FGD+V +LV GV++L V GT EA
Sbjct: 121 LLHDTVEDTGYSLEQLKADFGDKVGELVDGVTKLD------------KVKLGTSA--EAE 166
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 167 TIRKMVIAMAKDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMAT 226
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+LQ
Sbjct: 227 VKWELEDLAFAILQ 240
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V D ++ CY+ + +VH L
Sbjct: 282 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VRDCYAAMGVVHAL 332
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT MH AE+G+AAHW YKE
Sbjct: 333 WQPVPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYDMHRTAEYGIAAHWRYKE 392
Query: 534 TGNKLQSISSMDESDI 549
T S ++M+ +I
Sbjct: 393 TKGTHASNNAMELDEI 408
>gi|410456899|ref|ZP_11310748.1| GTP pyrophosphokinase [Bacillus bataviensis LMG 21833]
gi|409927039|gb|EKN64186.1| GTP pyrophosphokinase [Bacillus bataviensis LMG 21833]
Length = 731
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 105/188 (55%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V KA +AK AH Q+RK+G+PY+ H I ILA L TV AG LHDVV
Sbjct: 26 ELVSKAYEYAKHAHREQYRKSGEPYIIHPIQVAGILADLEMDPA-----TVAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D SL IEE F DEVA LV GV++L + H ++A + R M
Sbjct: 81 EDTNISLKDIEEAFNDEVAMLVDGVTKLGKFK--YKSHE----------EQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELE
Sbjct: 129 VAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRISNETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVLQ 289
D L
Sbjct: 189 DTALRYLN 196
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ LS R K +YSI+ KM ++ ++YD A+R+VV +I+ CY++L
Sbjct: 233 SIKAELSGRPKHIYSIYRKMVLQNKQFSEIYDLLAVRIVVN---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTYEMHRIAEFGVAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|429221371|ref|YP_007183015.1| RelA/SpoT family (p)ppGpp synthetase [Deinococcus peraridilitoris
DSM 19664]
gi|429132234|gb|AFZ69249.1| (p)ppGpp synthetase, RelA/SpoT family [Deinococcus peraridilitoris
DSM 19664]
Length = 746
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 118/189 (62%), Gaps = 15/189 (7%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
+ ++V +A FA+RAH G RK+G+PY+TH + +ILA L + D V+AG+LHD
Sbjct: 11 DQDRVARAYHFAERAHDGVLRKSGEPYITHPVTVAQILADLGMDT-----DGVIAGLLHD 65
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V+D + +E++FG V ++V G +++S + ++ L E++ +LR
Sbjct: 66 TVEDTDVTFEQVEQDFGVVVRRIVEGETKVSKLTKM----------SSNLHDEQSENLRQ 115
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+++KLADRLHNMRT+ ++P K + +A+ETL I+ LA RLG+ +K E
Sbjct: 116 MLIAMTGDIRVIIVKLADRLHNMRTLASMPAHKQQRIARETLEIFAPLAHRLGIGQIKWE 175
Query: 280 LEDLCFAVL 288
LEDL F L
Sbjct: 176 LEDLSFKYL 184
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------------IQ 461
++ R K LYSI +KMR++ + +++D A+RV++ K + P +
Sbjct: 233 ITGRGKHLYSIHNKMRKEGKSLEQIFDLLAVRVILRPK--PVEAPPGKAKERAEDAREKR 290
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY L +VH +W PI G F DYI PKP+GYQSLHT V G +EVQIR+Q+MHE A
Sbjct: 291 VCYHALGLVHSMWTPIPGRFKDYIAVPKPNGYQSLHTTVISTAGQPIEVQIRSQRMHEVA 350
Query: 522 EHGLAAHWLYKETGN 536
E G+AAHW+YK+ G
Sbjct: 351 EFGIAAHWMYKQGGK 365
>gi|330827727|ref|YP_004390679.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii B565]
gi|406675020|ref|ZP_11082211.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AMC35]
gi|423202941|ref|ZP_17189519.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AER39]
gi|423211599|ref|ZP_17198132.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AER397]
gi|328802863|gb|AEB48062.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii B565]
gi|404613258|gb|EKB10291.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AER397]
gi|404614197|gb|EKB11200.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AER39]
gi|404628158|gb|EKB24944.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
veronii AMC35]
Length = 705
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLKQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG+ VA+LVAGVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTSVTKADLAEQFGNAVAELVAGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
+L F A+ MR+ + R R G R I + S
Sbjct: 184 ELGFEALYPMRSRVLRESVRRAR-GNRREIIDSIQS 218
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIEHQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVKVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|254507261|ref|ZP_05119397.1| RelA/SpoT family protein [Vibrio parahaemolyticus 16]
gi|219549721|gb|EED26710.1| RelA/SpoT family protein [Vibrio parahaemolyticus 16]
Length = 706
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEEQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLKARVFGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVV---------ESADTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGDR 347
>gi|359423647|ref|ZP_09214774.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia amarae NBRC 15530]
gi|358241005|dbj|GAB04356.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia amarae NBRC 15530]
Length = 792
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + ++Q+A A H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 76 YPKADIAKLQRAYDVADERHAGQTRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 130
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E EFG EVA LV GV++L + LG EA
Sbjct: 131 LLHDTVEDTGYSLEQLEAEFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 175
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 176 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 235
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 236 TVKWELEDLSFAILH 250
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 11/136 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH L
Sbjct: 292 VEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGVVHSL 342
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW YKE
Sbjct: 343 WQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHWRYKE 402
Query: 534 TGNKLQSISSMDESDI 549
+G K + S +SDI
Sbjct: 403 SGYKSKGGSR--KSDI 416
>gi|357038708|ref|ZP_09100505.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
gi|355359500|gb|EHG07262.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
Length = 725
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 125/214 (58%), Gaps = 20/214 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A AFA AH GQ R +G+PY+TH + IL L + +DT+VAG+LHD V+D
Sbjct: 22 LKRAFAFANEAHAGQKRNSGEPYITHPVAITTILTDL-----EMDMDTLVAGLLHDTVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L IE+ FG EVA+LV GV++LS + + R++ +LR M L
Sbjct: 77 TGTTLEDIEKYFGREVAQLVDGVTKLSRLEYRSKEERQVE------------NLRKMFLA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RVVLIKLADRLHNMRT+ K R +A ETL I+ LA RLG++ LK ELEDL
Sbjct: 125 MARDIRVVLIKLADRLHNMRTLQYHLEHKQREIALETLEIFAPLAHRLGIYRLKWELEDL 184
Query: 284 C--FAVLQMRADLASMWSPRNRVGYSRRITTIVS 315
F+ + +LA + + R R I +I+S
Sbjct: 185 ALRFSNPEKYYELADLVA-RTREKREEYIRSIIS 217
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 13/141 (9%)
Query: 401 LISTSYIPGMEVTLSS----RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
+IS + MEV +++ R K+LYSI+ KM+++ + +++YD A+RV+V
Sbjct: 215 IISVLHKKMMEVKINAEIQGRPKNLYSIYMKMQKQQLEFNQIYDVMAVRVLVD------- 267
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
+++ CY++L VH LW+PI G F DYI PK + YQSLHT V P G LE+QIRT +
Sbjct: 268 --SVRDCYAVLGTVHTLWVPIPGRFKDYIAMPKSNMYQSLHTTVVSPQGDPLEIQIRTWE 325
Query: 517 MHEYAEHGLAAHWLYKETGNK 537
MH +E+G+AAHW YKE G K
Sbjct: 326 MHRTSEYGIAAHWRYKEGGGK 346
>gi|51535999|dbj|BAD38079.1| putative plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
Length = 708
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 121/201 (60%), Gaps = 14/201 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V K A++AH GQ R +GDPYL HC+ T +LA + +S V AG+L
Sbjct: 205 IFHEELVVKTFFEAEKAHRGQTRASGDPYLQHCVETAVLLANIGANS-----TVVSAGLL 259
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R N EA+ L
Sbjct: 260 HDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD------NNTASRIVEADRL 313
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADR+HNM+T+ ALP K + A+ET+ I+ LA+RLG+ + K
Sbjct: 314 HTMLLAMAD-ARAVLIKLADRVHNMKTLEALPLGKQQRFAKETMEIFVPLANRLGIASWK 372
Query: 278 AELEDLCFAVL--QMRADLAS 296
+LE+LCF L + DL+S
Sbjct: 373 DQLENLCFKHLNPEEHKDLSS 393
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R KSLYSI +KM +K++ + +++D LR+V + CY LD+VH
Sbjct: 424 NLSGRHKSLYSIHNKMLKKNLTMDEIHDIHGLRLVFEKEED---------CYRALDVVHE 474
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI PK +GY+SLHT V + EVQIRT++MH AE+G AAHW YK
Sbjct: 475 LWPQVPGRFKDYISRPKLNGYRSLHTVVMSENVHPFEVQIRTKEMHLQAEYGFAAHWRYK 534
Query: 533 E 533
E
Sbjct: 535 E 535
>gi|158320743|ref|YP_001513250.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus oremlandii OhILAs]
gi|158140942|gb|ABW19254.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus oremlandii OhILAs]
Length = 724
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 111/184 (60%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E + KA +A++AH GQ+RK+G+ Y H + RIL L + T+VAG+LHDV+
Sbjct: 20 ELITKAFNYAEKAHQGQYRKSGEDYFIHPVEVARILIDL-----QMDASTIVAGLLHDVI 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D ++EEFG E+A LV GV++++ R++ N +A +LR M+
Sbjct: 75 EDTEYGYDMVKEEFGVEIADLVEGVTKIT----------RLSFNSKE--ERQAENLRKMV 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ P K + A ETL I+ +A+RLG+ +K ELE
Sbjct: 123 LAMAKDIRVILIKLADRLHNMRTLKFQNPEKQKEKATETLEIFAPIANRLGISRIKWELE 182
Query: 282 DLCF 285
D+C
Sbjct: 183 DICL 186
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E ++ R K YSI+ KM + +++D A+RV+V +++ CY +L +
Sbjct: 228 IENEITGRPKHFYSIYRKMTYQGKSFDEIFDFMAVRVIVN---------SVKDCYGVLGV 278
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAHW
Sbjct: 279 VHTIWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGDPFEIQIRTFEMHQIAEYGIAAHW 338
Query: 530 LYKE 533
YKE
Sbjct: 339 KYKE 342
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 15/109 (13%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGE 783
++E + K+ LR ML WE++++ +S K+ +N V V P GE
Sbjct: 347 TVEQQNDMKLAWLRQMLEWEKEIKDPKEFMESLKIDLFSNE----------VFVFTPKGE 396
Query: 784 IMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 828
++ L GST D A K+ G+ K V V+G++V + +LK+G+IV++
Sbjct: 397 VVNLPIGSTPIDFAYKIHSGVGNKCVGAKVDGRIVPIDYKLKNGNIVQI 445
>gi|222111668|ref|YP_002553932.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax ebreus TPSY]
gi|221731112|gb|ACM33932.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax ebreus TPSY]
Length = 747
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V AC
Sbjct: 44 RARAFAEPLLIGETLETGENTLVHADAVSAILKHLGGSETMQAAVYLVY---------AC 94
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
L EE FG A L ++L + QL R ++ Q + ++R ML
Sbjct: 95 SHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVTGQQVDDAATQTENVRKML 153
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 154 LAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 213
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 214 DLAFRFLE 221
>gi|194289382|ref|YP_002005289.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
gi|193223217|emb|CAQ69222.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
Length = 742
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 529 WLYKETGNK 537
W YKE G++
Sbjct: 353 WRYKEAGSR 361
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 99/202 (49%), Gaps = 12/202 (5%)
Query: 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
V G P + E V++A+A+ + G TG+ +H RIL L RA
Sbjct: 11 VAGIP--DTELVERALAYVREHGAGVALPTGETVPSHAEGMLRILDGLRVDDSARA---- 64
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI-----NQLLRRHRRINVNQG 207
A L + E+ IE FG+EVA+LV GV +L I N+ + N+
Sbjct: 65 -AACLFGLAAFVPETEAEIEPRFGEEVARLVNGVRQLLRIGAIAGNRPDAESAAPSKNEA 123
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
HE+ LR MLL D RVVL++LA RL +R + + VA+ETL I+ L
Sbjct: 124 QARHEQVEALRKMLLAFAQDIRVVLVRLASRLQTLRWLAETKQSPLPGVARETLDIYAPL 183
Query: 268 ASRLGLWALKAELEDLCFAVLQ 289
A+RLG+W +K ELEDL F Q
Sbjct: 184 ANRLGIWQMKWELEDLAFRFEQ 205
>gi|296132724|ref|YP_003639971.1| (p)ppGpp synthetase I SpoT/RelA [Thermincola potens JR]
gi|296031302|gb|ADG82070.1| (p)ppGpp synthetase I, SpoT/RelA [Thermincola potens JR]
Length = 722
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 23/196 (11%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P +++ +++ FA++AH GQ R +G+PY+ H + ILA L + V T+ AG+
Sbjct: 15 PQVDEKFIEETYRFAEKAHEGQTRISGEPYIIHPLSVAHILADL-----ELDVVTIAAGL 69
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGV---SRLSYINQLLRRHRRINVNQGTLGHEE 213
LHDVV+D L +IEE+FG E+A LV GV SR+SY N++ ++
Sbjct: 70 LHDVVEDTDSPLETIEEKFGVEIALLVDGVTKLSRISYKNKM---------------EQQ 114
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
+LR M L M D RV+LIKLADRLHNMRT+ L K + +++ETL I+ LA RLG+
Sbjct: 115 VENLRKMFLAMAKDIRVILIKLADRLHNMRTLKHLAEPKQKEISEETLEIFAPLAHRLGI 174
Query: 274 WALKAELEDLCFAVLQ 289
+ +K ELEDL L+
Sbjct: 175 FKIKWELEDLALRYLE 190
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM + + ++YD A+RV+V ++ CY L
Sbjct: 227 GIKADIQGRPKHFYSIYKKMLEQQKELAEIYDLLAVRVIVD---------TVKDCYGALG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H LW PI G F DYI PK + YQSLHT V GP+G E+QIRT +MH AE+G+AAH
Sbjct: 278 IIHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPNGEPFEIQIRTWEMHRTAEYGIAAH 337
Query: 529 WLYKETGNK 537
W YKE G +
Sbjct: 338 WRYKEGGGR 346
>gi|412989289|emb|CCO15880.1| predicted protein [Bathycoccus prasinos]
Length = 894
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 106/497 (21%)
Query: 73 DFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIH 132
DFLW E+ ++ D F QV+ A+ A AH GQ RK+G+PY+ H +
Sbjct: 112 DFLWESELERRTEYLQD---------FERVQVRTALDIAFHAHDGQKRKSGEPYIIHPVA 162
Query: 133 TGRILAMLIPSSGKRAVDTVVAGILHDVVDDA-CESLGSIEEEFGDEVAKLVAGVSRLSY 191
ILA S +T+ AG+LHD V+D + S+E FG V +V G +++S
Sbjct: 163 VTCILA-----SYYMDHETLCAGLLHDTVEDTEFVTFESVESMFGPSVRAIVEGETKVSK 217
Query: 192 INQLLRRHRRINVNQGTLGHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP 249
++ + + + T + A+DL+ M L M + RV+++KLADRLHNMRT+ ++
Sbjct: 218 VSSTVSKAADDSFVSSTFDEPDVKADDLQQMFLAMTGEIRVIIVKLADRLHNMRTLGSMK 277
Query: 250 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF---------AVLQMRADLASMWSP 300
P K ++ ETLL++ LA LG++ +K ELE++ F AV Q + +L + P
Sbjct: 278 PEKRIKISNETLLVFAPLAKLLGMYDMKNELEEIAFGWASPGCYEAVAQRKEELERVHLP 337
Query: 301 RNRVGYSRRITTIVSSPPLDERTASDD---ESFTTF--DEHVLSMKDLLEAVVPFDILSD 355
I + + L+E DD S +F D+HV + +
Sbjct: 338 --------VINNVAAK--LNEALKDDDFLRGSVISFAVDKHVKENYGIYRKALK------ 381
Query: 356 RRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLS 415
+K+ F+HD +D+ + +E E++L S +P +
Sbjct: 382 SKKKPGFIHDKE------------EDSPVKEEDEDNVDEEEEQKLRDLKSRLPNVNEIAQ 429
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYD-ARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 474
R+ L + +K G+ + + A+RV T H +L +VH L+
Sbjct: 430 IRIVLLDDMSTK------GLSEAAKRSHAIRV-------TYH---------VLGLVHTLY 467
Query: 475 IPIDGEFDDYIVNPKPSGYQSLHTAV------------------------QGPDGSALEV 510
P+ G DYI PK + Y++LHT V Q + LE+
Sbjct: 468 PPVPGSMKDYIATPKLNAYRALHTTVLPIERGDMNDTDFQSANESFMEDEQNEEVFPLEI 527
Query: 511 QIRTQKMHEYAEHGLAA 527
QIRT++MH A G+ A
Sbjct: 528 QIRTEQMHLGAIWGICA 544
>gi|453382568|dbj|GAC82863.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia paraffinivorans NBRC
108238]
Length = 792
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 77 YPKADVATLQRAYDVAEERHAGQKRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 131
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E++FG EVA LV GV++L + LG EA
Sbjct: 132 LLHDTVEDTGYSLEELEKDFGPEVAHLVDGVTKLDKV---------------ALGSAAEA 176
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 177 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 236
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 237 TVKWELEDLSFAILH 251
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 289 INATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCEEDRD---------CYAAVGV 339
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 340 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 399
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE+G + +S D ++I+
Sbjct: 400 RYKESGYRNKSGRKTDTAEID 420
>gi|387128852|ref|YP_006297457.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM1]
gi|386275914|gb|AFI85812.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM1]
Length = 719
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 62 IASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQF 119
+++ +++++DF+ E +P I D T + N+ E +++A FA++ H GQ
Sbjct: 1 MSAKPSVASELDFIQ---ESEPKLTIDDLCFATSNYLENNQVESIRRAYHFAEQCHEGQT 57
Query: 120 RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
R++G+ Y+TH + +LAM+ + ++AG+LHDV++D S + EFG+ V
Sbjct: 58 RRSGERYITHPLAVAHVLAMM-----HMDYECIMAGLLHDVIEDTEMSKRDVIAEFGEPV 112
Query: 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRL 239
A+LV GV++L+ T H +A +LR MLL M D RV+++KLADRL
Sbjct: 113 AELVEGVTKLA------------QAAFETRQHAQAENLRKMLLAMSRDIRVIIVKLADRL 160
Query: 240 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
HNMRT+ L P K R +A ETL I+ +A RLG+ ++ ELEDL F VL
Sbjct: 161 HNMRTLGHLRPEKRRRIAHETLEIYAPIAQRLGMNLMRCELEDLGFHVL 209
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 80/133 (60%), Gaps = 12/133 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+LYSI+ KM K + +V D A R++V D + CY +L
Sbjct: 247 GLSADIQGREKNLYSIYKKMVSKQLSFSEVMDVYAFRIIVDD---------VDACYRMLG 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH L+ P+ G+F DYI PK +GYQSLHT + GP G +EVQIR++ M + AE G+AAH
Sbjct: 298 VVHNLYKPVQGKFKDYIAIPKANGYQSLHTVLFGPYGVPIEVQIRSRDMDQLAEAGVAAH 357
Query: 529 WLYKE---TGNKL 538
WLYK GN L
Sbjct: 358 WLYKTGEVAGNTL 370
>gi|121595454|ref|YP_987350.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. JS42]
gi|120607534|gb|ABM43274.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax sp. JS42]
Length = 747
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V AC
Sbjct: 44 RARAFAEPLLIGETLETGENTLVHADAVSAILKHLGGSETMQAAAYLVY---------AC 94
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
L EE FG A L ++L + QL R ++ Q + ++R ML
Sbjct: 95 SHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVMGQQVDDAATQTENVRKML 153
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 154 LAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 213
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 214 DLAFRFLE 221
>gi|145641875|ref|ZP_01797450.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
R3021]
gi|145273497|gb|EDK13368.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
22.4-21]
Length = 604
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFMIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTENQLKDEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYEIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|333991010|ref|YP_004523624.1| GTP pyrophosphokinase [Mycobacterium sp. JDM601]
gi|333486978|gb|AEF36370.1| GTP pyrophosphokinase RelA [Mycobacterium sp. JDM601]
Length = 793
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 113/194 (58%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A++ H Q R +GDPY+TH + ILA L + T+VA
Sbjct: 78 YPKANLALLQRAYEVAEQRHATQLRHSGDPYITHPLAVATILAELGMDT-----TTLVAA 132
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ EFGDEVA LV GV++L V GT EA
Sbjct: 133 LLHDTVEDTGYTLEALAGEFGDEVAHLVDGVTKLD------------KVVLGTAA--EAE 178
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRTI LPP K A+ETL + LA RLG+
Sbjct: 179 TIRKMVIAMARDPRVLVIKVADRLHNMRTIRFLPPEKQARKARETLEVIAPLAHRLGMAT 238
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 239 VKWELEDLSFAILH 252
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T + + R K +SI+ KM + +YD LR++ + I
Sbjct: 281 IINTLAKSKIAANVEGRPKHYWSIYQKMIVRGRDFDDIYDLVGLRILCDE---------I 331
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LE+QIRT++MH
Sbjct: 332 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEIQIRTREMHRT 391
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 392 AEYGIAAHWRYKEAKGR 408
>gi|257422238|ref|ZP_05599228.1| GTP pyrophosphokinase [Enterococcus faecalis X98]
gi|422705431|ref|ZP_16763233.1| GTP diphosphokinase [Enterococcus faecalis TX0043]
gi|257164062|gb|EEU94022.1| GTP pyrophosphokinase [Enterococcus faecalis X98]
gi|315157277|gb|EFU01294.1| GTP diphosphokinase [Enterococcus faecalis TX0043]
Length = 737
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENHRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|256752957|ref|ZP_05493784.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748165|gb|EEU61242.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
Length = 493
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHDV++D
Sbjct: 22 IYKAYDFAVNAHDGQIRNSGEPYIIHPIEVAYILAEL-----ELDITTIAAGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ G + E FG E+A LV GV++L I + V Q +A ++R ML+
Sbjct: 77 TDVTYGQLLEYFGKEIADLVDGVTKLGKIEY------KSKVEQ------QAENMRKMLIA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K ELEDL
Sbjct: 125 MAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDL 184
Query: 284 CFAVLQ 289
C L
Sbjct: 185 CLRYLH 190
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|29376496|ref|NP_815650.1| GTP pyrophosphokinase [Enterococcus faecalis V583]
gi|227519316|ref|ZP_03949365.1| GTP pyrophosphokinase [Enterococcus faecalis TX0104]
gi|229545443|ref|ZP_04434168.1| GTP pyrophosphokinase [Enterococcus faecalis TX1322]
gi|229549687|ref|ZP_04438412.1| GTP pyrophosphokinase [Enterococcus faecalis ATCC 29200]
gi|255972385|ref|ZP_05422971.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975488|ref|ZP_05426074.1| RelA/SpoT protein [Enterococcus faecalis T2]
gi|256762903|ref|ZP_05503483.1| RelA/SpoT protein [Enterococcus faecalis T3]
gi|256853488|ref|ZP_05558858.1| GTP pyrophosphokinase [Enterococcus faecalis T8]
gi|256959287|ref|ZP_05563458.1| RelA/SpoT protein [Enterococcus faecalis DS5]
gi|256964754|ref|ZP_05568925.1| RelA/SpoT protein [Enterococcus faecalis HIP11704]
gi|257079353|ref|ZP_05573714.1| RelA/SpoT protein [Enterococcus faecalis JH1]
gi|257082207|ref|ZP_05576568.1| RelA/SpoT protein [Enterococcus faecalis E1Sol]
gi|257084825|ref|ZP_05579186.1| RelA/SpoT protein [Enterococcus faecalis Fly1]
gi|257087178|ref|ZP_05581539.1| RelA/SpoT protein [Enterococcus faecalis D6]
gi|257419654|ref|ZP_05596648.1| RelA/SpoT family protein [Enterococcus faecalis T11]
gi|294779745|ref|ZP_06745132.1| GTP diphosphokinase [Enterococcus faecalis PC1.1]
gi|300860169|ref|ZP_07106256.1| GTP diphosphokinase [Enterococcus faecalis TUSoD Ef11]
gi|307268139|ref|ZP_07549526.1| GTP diphosphokinase [Enterococcus faecalis TX4248]
gi|307272834|ref|ZP_07554081.1| GTP diphosphokinase [Enterococcus faecalis TX0855]
gi|307275913|ref|ZP_07557046.1| GTP diphosphokinase [Enterococcus faecalis TX2134]
gi|307277696|ref|ZP_07558782.1| GTP diphosphokinase [Enterococcus faecalis TX0860]
gi|307287881|ref|ZP_07567914.1| GTP diphosphokinase [Enterococcus faecalis TX0109]
gi|307295910|ref|ZP_07575742.1| GTP diphosphokinase [Enterococcus faecalis TX0411]
gi|312900879|ref|ZP_07760173.1| GTP diphosphokinase [Enterococcus faecalis TX0470]
gi|312951286|ref|ZP_07770187.1| GTP diphosphokinase [Enterococcus faecalis TX0102]
gi|384513600|ref|YP_005708693.1| GTP diphosphokinase [Enterococcus faecalis OG1RF]
gi|384518976|ref|YP_005706281.1| GTP pyrophosphokinase [Enterococcus faecalis 62]
gi|397700204|ref|YP_006537992.1| GTP pyrophosphokinase [Enterococcus faecalis D32]
gi|422686386|ref|ZP_16744584.1| GTP diphosphokinase [Enterococcus faecalis TX4000]
gi|422692692|ref|ZP_16750707.1| GTP diphosphokinase [Enterococcus faecalis TX0031]
gi|422697189|ref|ZP_16755135.1| GTP diphosphokinase [Enterococcus faecalis TX1346]
gi|422704878|ref|ZP_16762688.1| GTP diphosphokinase [Enterococcus faecalis TX1302]
gi|422711426|ref|ZP_16768355.1| GTP diphosphokinase [Enterococcus faecalis TX0027]
gi|422713284|ref|ZP_16770037.1| GTP diphosphokinase [Enterococcus faecalis TX0309A]
gi|422717180|ref|ZP_16773870.1| GTP diphosphokinase [Enterococcus faecalis TX0309B]
gi|422719465|ref|ZP_16776106.1| GTP diphosphokinase [Enterococcus faecalis TX0017]
gi|422724016|ref|ZP_16780506.1| GTP diphosphokinase [Enterococcus faecalis TX2137]
gi|422725202|ref|ZP_16781670.1| GTP diphosphokinase [Enterococcus faecalis TX0312]
gi|422730242|ref|ZP_16786635.1| GTP diphosphokinase [Enterococcus faecalis TX0012]
gi|422732553|ref|ZP_16788884.1| GTP diphosphokinase [Enterococcus faecalis TX0645]
gi|422735767|ref|ZP_16792033.1| GTP diphosphokinase [Enterococcus faecalis TX1341]
gi|422741846|ref|ZP_16795868.1| GTP diphosphokinase [Enterococcus faecalis TX2141]
gi|424672845|ref|ZP_18109788.1| GTP diphosphokinase [Enterococcus faecalis 599]
gi|424678338|ref|ZP_18115178.1| GTP diphosphokinase [Enterococcus faecalis ERV103]
gi|424682195|ref|ZP_18118972.1| GTP diphosphokinase [Enterococcus faecalis ERV116]
gi|424685423|ref|ZP_18122121.1| GTP diphosphokinase [Enterococcus faecalis ERV129]
gi|424688183|ref|ZP_18124799.1| GTP diphosphokinase [Enterococcus faecalis ERV25]
gi|424691052|ref|ZP_18127579.1| GTP diphosphokinase [Enterococcus faecalis ERV31]
gi|424694635|ref|ZP_18131031.1| GTP diphosphokinase [Enterococcus faecalis ERV37]
gi|424695820|ref|ZP_18132193.1| GTP diphosphokinase [Enterococcus faecalis ERV41]
gi|424702067|ref|ZP_18138230.1| GTP diphosphokinase [Enterococcus faecalis ERV62]
gi|424704288|ref|ZP_18140390.1| GTP diphosphokinase [Enterococcus faecalis ERV63]
gi|424712754|ref|ZP_18144923.1| GTP diphosphokinase [Enterococcus faecalis ERV65]
gi|424716877|ref|ZP_18146176.1| GTP diphosphokinase [Enterococcus faecalis ERV68]
gi|424722259|ref|ZP_18151323.1| GTP diphosphokinase [Enterococcus faecalis ERV72]
gi|424722967|ref|ZP_18151987.1| GTP diphosphokinase [Enterococcus faecalis ERV73]
gi|424728350|ref|ZP_18156957.1| GTP diphosphokinase [Enterococcus faecalis ERV81]
gi|424740517|ref|ZP_18168899.1| GTP diphosphokinase [Enterococcus faecalis ERV85]
gi|424749874|ref|ZP_18177951.1| GTP diphosphokinase [Enterococcus faecalis ERV93]
gi|424759337|ref|ZP_18187003.1| GTP diphosphokinase [Enterococcus faecalis R508]
gi|428767377|ref|YP_007153488.1| GTP pyrophosphokinase [Enterococcus faecalis str. Symbioflor 1]
gi|430360791|ref|ZP_19426449.1| RelA/SpoT family protein [Enterococcus faecalis OG1X]
gi|430367252|ref|ZP_19427815.1| RelA/SpoT family protein [Enterococcus faecalis M7]
gi|29343960|gb|AAO81720.1| GTP pyrophosphokinase [Enterococcus faecalis V583]
gi|227073245|gb|EEI11208.1| GTP pyrophosphokinase [Enterococcus faecalis TX0104]
gi|229305167|gb|EEN71163.1| GTP pyrophosphokinase [Enterococcus faecalis ATCC 29200]
gi|229309359|gb|EEN75346.1| GTP pyrophosphokinase [Enterococcus faecalis TX1322]
gi|255963403|gb|EET95879.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968360|gb|EET98982.1| RelA/SpoT protein [Enterococcus faecalis T2]
gi|256684154|gb|EEU23849.1| RelA/SpoT protein [Enterococcus faecalis T3]
gi|256711947|gb|EEU26985.1| GTP pyrophosphokinase [Enterococcus faecalis T8]
gi|256949783|gb|EEU66415.1| RelA/SpoT protein [Enterococcus faecalis DS5]
gi|256955250|gb|EEU71882.1| RelA/SpoT protein [Enterococcus faecalis HIP11704]
gi|256987383|gb|EEU74685.1| RelA/SpoT protein [Enterococcus faecalis JH1]
gi|256990237|gb|EEU77539.1| RelA/SpoT protein [Enterococcus faecalis E1Sol]
gi|256992855|gb|EEU80157.1| RelA/SpoT protein [Enterococcus faecalis Fly1]
gi|256995208|gb|EEU82510.1| RelA/SpoT protein [Enterococcus faecalis D6]
gi|257161482|gb|EEU91442.1| RelA/SpoT family protein [Enterococcus faecalis T11]
gi|294453119|gb|EFG21534.1| GTP diphosphokinase [Enterococcus faecalis PC1.1]
gi|295113238|emb|CBL31875.1| (p)ppGpp synthetase, RelA/SpoT family [Enterococcus sp. 7L76]
gi|300849208|gb|EFK76958.1| GTP diphosphokinase [Enterococcus faecalis TUSoD Ef11]
gi|306496241|gb|EFM65820.1| GTP diphosphokinase [Enterococcus faecalis TX0411]
gi|306501026|gb|EFM70333.1| GTP diphosphokinase [Enterococcus faecalis TX0109]
gi|306505575|gb|EFM74759.1| GTP diphosphokinase [Enterococcus faecalis TX0860]
gi|306507243|gb|EFM76380.1| GTP diphosphokinase [Enterococcus faecalis TX2134]
gi|306510448|gb|EFM79471.1| GTP diphosphokinase [Enterococcus faecalis TX0855]
gi|306515529|gb|EFM84057.1| GTP diphosphokinase [Enterococcus faecalis TX4248]
gi|310630722|gb|EFQ14005.1| GTP diphosphokinase [Enterococcus faecalis TX0102]
gi|311291978|gb|EFQ70534.1| GTP diphosphokinase [Enterococcus faecalis TX0470]
gi|315025979|gb|EFT37911.1| GTP diphosphokinase [Enterococcus faecalis TX2137]
gi|315028900|gb|EFT40832.1| GTP diphosphokinase [Enterococcus faecalis TX4000]
gi|315033291|gb|EFT45223.1| GTP diphosphokinase [Enterococcus faecalis TX0017]
gi|315034529|gb|EFT46461.1| GTP diphosphokinase [Enterococcus faecalis TX0027]
gi|315143404|gb|EFT87420.1| GTP diphosphokinase [Enterococcus faecalis TX2141]
gi|315149223|gb|EFT93239.1| GTP diphosphokinase [Enterococcus faecalis TX0012]
gi|315152592|gb|EFT96608.1| GTP diphosphokinase [Enterococcus faecalis TX0031]
gi|315159888|gb|EFU03905.1| GTP diphosphokinase [Enterococcus faecalis TX0312]
gi|315161370|gb|EFU05387.1| GTP diphosphokinase [Enterococcus faecalis TX0645]
gi|315163667|gb|EFU07684.1| GTP diphosphokinase [Enterococcus faecalis TX1302]
gi|315167501|gb|EFU11518.1| GTP diphosphokinase [Enterococcus faecalis TX1341]
gi|315174315|gb|EFU18332.1| GTP diphosphokinase [Enterococcus faecalis TX1346]
gi|315574555|gb|EFU86746.1| GTP diphosphokinase [Enterococcus faecalis TX0309B]
gi|315581803|gb|EFU93994.1| GTP diphosphokinase [Enterococcus faecalis TX0309A]
gi|323481109|gb|ADX80548.1| GTP pyrophosphokinase [Enterococcus faecalis 62]
gi|327535489|gb|AEA94323.1| GTP diphosphokinase [Enterococcus faecalis OG1RF]
gi|397336843|gb|AFO44515.1| GTP pyrophosphokinase [Enterococcus faecalis D32]
gi|402349566|gb|EJU84510.1| GTP diphosphokinase [Enterococcus faecalis ERV116]
gi|402351666|gb|EJU86546.1| GTP diphosphokinase [Enterococcus faecalis ERV103]
gi|402353351|gb|EJU88183.1| GTP diphosphokinase [Enterococcus faecalis 599]
gi|402358773|gb|EJU93433.1| GTP diphosphokinase [Enterococcus faecalis ERV129]
gi|402361575|gb|EJU96125.1| GTP diphosphokinase [Enterococcus faecalis ERV25]
gi|402362896|gb|EJU97408.1| GTP diphosphokinase [Enterococcus faecalis ERV31]
gi|402370073|gb|EJV04313.1| GTP diphosphokinase [Enterococcus faecalis ERV62]
gi|402370270|gb|EJV04490.1| GTP diphosphokinase [Enterococcus faecalis ERV37]
gi|402379160|gb|EJV12977.1| GTP diphosphokinase [Enterococcus faecalis ERV41]
gi|402379631|gb|EJV13423.1| GTP diphosphokinase [Enterococcus faecalis ERV65]
gi|402382377|gb|EJV16044.1| GTP diphosphokinase [Enterococcus faecalis ERV63]
gi|402386637|gb|EJV20139.1| GTP diphosphokinase [Enterococcus faecalis ERV68]
gi|402389444|gb|EJV22840.1| GTP diphosphokinase [Enterococcus faecalis ERV72]
gi|402394029|gb|EJV27227.1| GTP diphosphokinase [Enterococcus faecalis ERV81]
gi|402400374|gb|EJV33205.1| GTP diphosphokinase [Enterococcus faecalis ERV73]
gi|402401938|gb|EJV34677.1| GTP diphosphokinase [Enterococcus faecalis ERV85]
gi|402404795|gb|EJV37408.1| GTP diphosphokinase [Enterococcus faecalis R508]
gi|402407443|gb|EJV39973.1| GTP diphosphokinase [Enterococcus faecalis ERV93]
gi|427185550|emb|CCO72774.1| GTP pyrophosphokinase [Enterococcus faecalis str. Symbioflor 1]
gi|429512728|gb|ELA02326.1| RelA/SpoT family protein [Enterococcus faecalis OG1X]
gi|429516725|gb|ELA06204.1| RelA/SpoT family protein [Enterococcus faecalis M7]
Length = 737
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENHRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|378697980|ref|YP_005179938.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Haemophilus
influenzae 10810]
gi|301170496|emb|CBW30103.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Haemophilus
influenzae 10810]
Length = 704
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFMIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTENQLKDEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYEIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|160893486|ref|ZP_02074271.1| hypothetical protein CLOL250_01037 [Clostridium sp. L2-50]
gi|156864881|gb|EDO58312.1| RelA/SpoT family protein [Clostridium sp. L2-50]
Length = 777
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 137/251 (54%), Gaps = 24/251 (9%)
Query: 68 LSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYL 127
LST DF P E ++ + +T +P + ++KA A +AH GQ RK+G+PY+
Sbjct: 37 LSTPADFTPP---EDLYKELIKKI-LTYHPSTDISMIEKAYKVASKAHEGQLRKSGEPYI 92
Query: 128 THCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVS 187
H + ILA L + +T+VAGILHDVV+D + I EF +EVA LV GV+
Sbjct: 93 MHPLCVAIILAEL-----ELDKETIVAGILHDVVEDTVMTSEEIAAEFSEEVAFLVEGVT 147
Query: 188 RLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA 247
+L+ QL +I V +A +LR M L M D RV+LIKLADRLHN+RT+
Sbjct: 148 KLT---QLKMTTDKIEV--------QAENLRKMFLSMAKDIRVILIKLADRLHNLRTLQY 196
Query: 248 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL--QMRADLASMWSPR--NR 303
PAK A+ET+ I+ +A RLG+ +K EL+DL L ++ DL + R R
Sbjct: 197 QSPAKQVEKARETMDIYAPIAHRLGISKIKVELDDLSMKYLMPEVYKDLTAQIDARMHER 256
Query: 304 VGYSRRITTIV 314
Y +RI V
Sbjct: 257 EAYIKRIVADV 267
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 83/132 (62%), Gaps = 11/132 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R+K L+SI+ KM+ ++ + ++YD A+R+ V ++ CYS L I
Sbjct: 276 LDAEIDGRVKHLFSIYKKMKNQNKTLDQIYDIFAVRIKV---------ETVRDCYSALGI 326
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PK + YQSLHT + GP+G E+QIRT +MH AE+G+AAHW
Sbjct: 327 IHEMYKPIPGRFKDYIAMPKSNMYQSLHTTLIGPEGQPFEIQIRTFEMHRTAEYGIAAHW 386
Query: 530 LYKE--TGNKLQ 539
YKE TG +Q
Sbjct: 387 KYKENITGTVMQ 398
>gi|257416410|ref|ZP_05593404.1| RelA/SpoT protein [Enterococcus faecalis ARO1/DG]
gi|422695354|ref|ZP_16753342.1| GTP diphosphokinase [Enterococcus faecalis TX4244]
gi|257158238|gb|EEU88198.1| RelA/SpoT protein [Enterococcus faecalis ARO1/DG]
gi|315147637|gb|EFT91653.1| GTP diphosphokinase [Enterococcus faecalis TX4244]
Length = 737
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENHRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|409997388|ref|YP_006751789.1| GTP pyrophosphokinase [Lactobacillus casei W56]
gi|406358400|emb|CCK22670.1| GTP pyrophosphokinase [Lactobacillus casei W56]
Length = 787
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 73 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 127
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 128 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 175
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 176 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 235
Query: 284 CFAVLQ 289
L
Sbjct: 236 SLRYLN 241
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 283 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 333
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 334 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 393
Query: 534 ----------TGNKLQSISSMDESDIEASSS 554
TG KL + E E S +
Sbjct: 394 GQTSKVEYDKTGKKLDIFREILELQDETSDA 424
>gi|404258414|ref|ZP_10961733.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia namibiensis NBRC
108229]
gi|403402928|dbj|GAC00143.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia namibiensis NBRC
108229]
Length = 784
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 70 YPKADVALLQRAYDVAEERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 124
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E +FG EVA LV GV++L + LG EA
Sbjct: 125 LLHDTVEDTGYSLQALERDFGQEVAHLVDGVTKLDKV---------------ALGSAAEA 169
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 170 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 229
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 230 TVKWELEDLSFAILH 244
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 282 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEEDRD---------CYAAVGV 332
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 333 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 392
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE+G + +S D ++I+
Sbjct: 393 RYKESGYR-KSGKKSDTAEID 412
>gi|326390128|ref|ZP_08211689.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
gi|325993776|gb|EGD52207.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
Length = 719
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|340786805|ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
gi|340552072|gb|AEK61447.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
Length = 757
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI++KM+ K++ ++YD RA RV+V D ++ CY++L I
Sbjct: 251 IKAEVSGRPKHIYSIWNKMQGKELDFSELYDVRAFRVIVDD---------VKTCYTVLGI 301
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W+PI EFDDYI PK +GYQSLHT V D ALEVQIRT +MH +AE+G+AAHW
Sbjct: 302 VHNIWVPIPKEFDDYISRPKQNGYQSLHTVVLADDDRALEVQIRTNEMHHFAEYGVAAHW 361
Query: 530 LYKETGNKLQSISSMDE 546
YKE G S DE
Sbjct: 362 RYKEAGGSNFSAQKYDE 378
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 93/196 (47%), Gaps = 26/196 (13%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V A+AF + + TG L ILA+L V+T +AG+L ++
Sbjct: 27 RVLDALAFVEPLYADNVITTGQSTLDFSQGVTSILALLDTD-----VETRIAGLLFELPL 81
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH-----------RRINVNQGTLGH 211
+IE+ FG E++ LV G I QL+R H R N Q
Sbjct: 82 LDASYADTIEQRFGKEISDLVGG------IRQLMRLHGFTFGLPQEVMRGKNAAQQAASQ 135
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLIWCSLAS 269
E LR MLL M D RVVL++LA R+ +R + + + A+ETL ++ LA+
Sbjct: 136 VET--LRKMLLAMATDMRVVLVRLASRVTALRYFSEHKIENERTSQYARETLDLYAPLAN 193
Query: 270 RLGLWALKAELEDLCF 285
RLG+W LK ELEDL F
Sbjct: 194 RLGIWQLKWELEDLSF 209
>gi|191638527|ref|YP_001987693.1| GTP pyrophosphokinase [Lactobacillus casei BL23]
gi|385820236|ref|YP_005856623.1| GTP pyrophosphokinase [Lactobacillus casei LC2W]
gi|385823433|ref|YP_005859775.1| GTP pyrophosphokinase [Lactobacillus casei BD-II]
gi|418005247|ref|ZP_12645243.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW1]
gi|190712829|emb|CAQ66835.1| GTP pyrophosphokinase [Lactobacillus casei BL23]
gi|327382563|gb|AEA54039.1| GTP pyrophosphokinase [Lactobacillus casei LC2W]
gi|327385760|gb|AEA57234.1| GTP pyrophosphokinase [Lactobacillus casei BD-II]
gi|410547500|gb|EKQ21733.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW1]
Length = 742
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 534 ----------TGNKLQSISSMDESDIEASSS 554
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|138896146|ref|YP_001126599.1| ppGpp synthetase/hydrolase Rel [Geobacillus thermodenitrificans
NG80-2]
gi|134267659|gb|ABO67854.1| ppGpp synthetase/hydrolase Rel [Geobacillus thermodenitrificans
NG80-2]
Length = 732
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH QFRK+G+PY+ H I ILA L K T+ AG LHDVV+D
Sbjct: 28 LKKAYEFAKHAHRDQFRKSGEPYIIHPIQVAGILADL-----KMDATTIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E EFG +VA LV GV++L + + ++A + R M L
Sbjct: 83 TEATKEDLEREFGADVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMFLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|42572809|ref|NP_974501.1| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
gi|332656746|gb|AEE82146.1| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
Length = 816
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQK + A AHHGQ R++G+P++ H + RIL L + +++VAG+LHD V
Sbjct: 148 EFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGEL-----ELDWESIVAGLLHDTV 202
Query: 162 DDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
+D + IEEEFG V +V G +++S + +L + T+ +A+DLR M
Sbjct: 203 EDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-----KCKTESETIQDVKADDLRQM 257
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L M D+ RV+++KLADRLHNMRT+ +PP K ++A ETL ++ LA LG++++K+EL
Sbjct: 258 FLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSEL 317
Query: 281 EDLCF 285
E+L F
Sbjct: 318 ENLSF 322
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI---QCCYSLLDIVHR 472
S K YSI+ + I+ LR+VV K GP Q CY +L +VH
Sbjct: 376 SVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPSVGVGPLCSPQQICYHVLGLVHE 435
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLAAHW 529
+W PI DYI PKP+GYQSLHT V LEVQIRT++M AE G+A ++
Sbjct: 436 IWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAVYY 495
>gi|257090255|ref|ZP_05584616.1| RelA/SpoT family protein [Enterococcus faecalis CH188]
gi|312902753|ref|ZP_07761957.1| GTP diphosphokinase [Enterococcus faecalis TX0635]
gi|422690313|ref|ZP_16748370.1| GTP diphosphokinase [Enterococcus faecalis TX0630]
gi|422702134|ref|ZP_16759974.1| GTP diphosphokinase [Enterococcus faecalis TX1342]
gi|256999067|gb|EEU85587.1| RelA/SpoT family protein [Enterococcus faecalis CH188]
gi|310633807|gb|EFQ17090.1| GTP diphosphokinase [Enterococcus faecalis TX0635]
gi|315169383|gb|EFU13400.1| GTP diphosphokinase [Enterococcus faecalis TX1342]
gi|315576684|gb|EFU88875.1| GTP diphosphokinase [Enterococcus faecalis TX0630]
Length = 737
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENHRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|227534968|ref|ZP_03965017.1| GTP pyrophosphokinase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631387|ref|ZP_04674418.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066581|ref|YP_003788604.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei str. Zhang]
gi|417980818|ref|ZP_12621497.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
12A]
gi|417986894|ref|ZP_12627458.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
32G]
gi|417999269|ref|ZP_12639480.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
T71499]
gi|418002217|ref|ZP_12642339.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UCD174]
gi|418008131|ref|ZP_12648000.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW4]
gi|418010975|ref|ZP_12650746.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lc-10]
gi|227187425|gb|EEI67492.1| GTP pyrophosphokinase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239525852|gb|EEQ64853.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300438988|gb|ADK18754.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei str. Zhang]
gi|410524265|gb|EKP99178.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
32G]
gi|410524329|gb|EKP99241.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
12A]
gi|410539545|gb|EKQ14073.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
T71499]
gi|410544645|gb|EKQ18966.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UCD174]
gi|410547359|gb|EKQ21594.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
UW4]
gi|410553554|gb|EKQ27557.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lc-10]
Length = 742
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 534 ----------TGNKLQSISSMDESDIEASSS 554
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|86609008|ref|YP_477770.1| RelA/SpoT family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557550|gb|ABD02507.1| RelA/SpoT family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 760
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 17/189 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A F+ H GQ RK+GDPY+ H + +A L+ G AV TV AG+LHDV++D
Sbjct: 52 LRRAFEFSYCLHQGQKRKSGDPYIAHPV----AVATLLRELGGDAV-TVAAGLLHDVIED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ ++E EFG EV LV GV++LS + N + T ++A + R M +
Sbjct: 107 TEVTPEALEAEFGSEVRLLVEGVTKLS----------KFNFSSKT--EQQAENFRRMFVA 154
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P+K R +A ET+ I+ LA+RLG+W K ELEDL
Sbjct: 155 MAKDIRVIVVKLADRLHNMRTLQYLSPSKQRQIAAETMEIFAPLANRLGIWHFKWELEDL 214
Query: 284 CFAVLQMRA 292
F L A
Sbjct: 215 AFKYLDYEA 223
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 10/129 (7%)
Query: 409 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
G+E +S R K LYSI+ KM+++ H++YD A+RV+V + CY +L
Sbjct: 257 GLEHFEISGRPKHLYSIYRKMQQQHKEFHEIYDLSAVRVIVHTNSE---------CYRVL 307
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
+VH + PI G F DYI PK + YQSLHTAV G G +EVQIRT++MH AE+G+AA
Sbjct: 308 AVVHNCFRPIPGRFKDYIGLPKANRYQSLHTAVIGLQGRPVEVQIRTEEMHRVAEYGIAA 367
Query: 528 HWLYKETGN 536
HW YKE G+
Sbjct: 368 HWKYKEAGS 376
>gi|417989775|ref|ZP_12630276.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
A2-362]
gi|417993039|ref|ZP_12633390.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
CRF28]
gi|417996397|ref|ZP_12636677.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
M36]
gi|418015214|ref|ZP_12654791.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lpc-37]
gi|410532448|gb|EKQ07156.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
CRF28]
gi|410535519|gb|EKQ10140.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
M36]
gi|410537520|gb|EKQ12094.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
A2-362]
gi|410552038|gb|EKQ26077.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Lactobacillus casei
Lpc-37]
Length = 742
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 534 ----------TGNKLQSISSMDESDIEASSS 554
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|373857672|ref|ZP_09600413.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
gi|372452804|gb|EHP26274.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
Length = 731
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 108/188 (57%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA FAK AH Q+RK+G+PY+ H I ILA L + +TV AG LHDVV
Sbjct: 26 EMVKKAYDFAKHAHRDQYRKSGEPYIIHPIQVAGILADL-----EMDPETVAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I+ F DEVA LV GV++L I + H ++A + R M
Sbjct: 81 EDTSVTLEDIKTAFNDEVAMLVDGVTKLGKIK--YKSHE----------EQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELE
Sbjct: 129 VAMAQDIRVILIKLADRLHNMRTLKHLPFEKQRRISNETLEIFAPLAHRLGISKVKWELE 188
Query: 282 DLCFAVLQ 289
D L
Sbjct: 189 DTALRYLN 196
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 SIKAELSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSEMHEIAEFGIAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G ISS +
Sbjct: 344 WAYKE-GKSASDISSYE 359
>gi|372268561|ref|ZP_09504609.1| GTP pyrophosphokinase [Alteromonas sp. S89]
Length = 723
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 98/158 (62%), Gaps = 15/158 (9%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +YSI+ KMRRK++G +VYD RA+R++V P ++ CY++L IVH LW
Sbjct: 240 RAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PTVRDCYAVLGIVHNLWRN 290
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I EFDDYI +PK +GY+SLHTAV GPD LEVQIRT MHE AE+G+ AHW YK T
Sbjct: 291 IPNEFDDYIASPKENGYRSLHTAVIGPDRKVLEVQIRTFAMHEEAEYGVCAHWRYKGTDK 350
Query: 537 KLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDL 569
K + D + + S L + D H NPL DL
Sbjct: 351 KSGQLEGQDGYE-QKISWLRQVLDWHEEVGGNPLQDDL 387
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV---NQ 206
+ + A +L+ V + L ++E E G+ VAKL+ GV R++ I R R + NQ
Sbjct: 58 EALCAAMLYRAVREKRLPLKTVEAEMGETVAKLIRGVLRMAVI-----RSRSADTGEENQ 112
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
E + ++R ML+ +VDD RV LIKLA+R +R AK R VA+E ++
Sbjct: 113 SGAVEEHSENIRRMLVALVDDVRVALIKLAERTCAIRAAKNTDEAKRRRVAREVADVYAP 172
Query: 267 LASRLGLWALKAELEDLCFAVLQ 289
LA RLG+ +K ELEDL F L+
Sbjct: 173 LAHRLGIGHIKWELEDLAFRYLE 195
>gi|392941128|ref|ZP_10306772.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
gi|392292878|gb|EIW01322.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
Length = 719
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAYILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|16800626|ref|NP_470894.1| hypothetical protein lin1558 [Listeria innocua Clip11262]
gi|422413014|ref|ZP_16489973.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
gi|16414045|emb|CAC96789.1| relA [Listeria innocua Clip11262]
gi|313618809|gb|EFR90701.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
Length = 738
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG+EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGEEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|256961538|ref|ZP_05565709.1| RelA/SpoT protein [Enterococcus faecalis Merz96]
gi|293384703|ref|ZP_06630558.1| GTP diphosphokinase [Enterococcus faecalis R712]
gi|293387403|ref|ZP_06631958.1| GTP diphosphokinase [Enterococcus faecalis S613]
gi|312908311|ref|ZP_07767275.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 512]
gi|312910615|ref|ZP_07769457.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 516]
gi|256952034|gb|EEU68666.1| RelA/SpoT protein [Enterococcus faecalis Merz96]
gi|291078010|gb|EFE15374.1| GTP diphosphokinase [Enterococcus faecalis R712]
gi|291083194|gb|EFE20157.1| GTP diphosphokinase [Enterococcus faecalis S613]
gi|310625725|gb|EFQ09008.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 512]
gi|311289163|gb|EFQ67719.1| GTP diphosphokinase [Enterococcus faecalis DAPTO 516]
Length = 737
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 21/186 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA+ +A++AH GQ R++G+PY+ H I ILA L TV G LHDVV
Sbjct: 26 ELVQKALTYAEKAHEGQVRQSGEPYIIHPIQVAGILAELHMDP-----HTVATGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRV 219
+D +L ++EEFG+++A LV GV++L I HEE A + R
Sbjct: 81 EDTDVTLDDLKEEFGEDIAMLVDGVTKLGKIK--------------YKSHEEQLAENHRK 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K E
Sbjct: 127 MLLAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWE 186
Query: 280 LEDLCF 285
LED
Sbjct: 187 LEDTAL 192
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G+ +EVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WTPMPGRFKDYIAMPKANMYQSIHTTVIGPKGNPVEVQIRTHEMHQIAEFGVAAHWAYKE 348
>gi|352085537|ref|ZP_08953157.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
gi|351681958|gb|EHA65072.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
Length = 710
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 147/323 (45%), Gaps = 92/323 (28%)
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A LR +LL +V D RVV + LA +L MR ALP + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAPALPEGERQALARLTRDIHAPLANRLGI 170
Query: 274 WALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 333
W LK ELEDL F LQ RRI + LDER A D E+F
Sbjct: 171 WQLKWELEDLAFRYLQ--------------PDTYRRIANL-----LDERRA-DREAFIRD 210
Query: 334 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACE 393
S+ +L A+ I ++ R K ++ + K + Q+K+ D
Sbjct: 211 -----SLAELQRALEAAGIQAELAGRPKHIYSIWK--KMQRKSLDFSD------------ 251
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
LY I RA+RV+V +
Sbjct: 252 ---------------------------LYDI-----------------RAVRVLVDN--- 264
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
I CY+ L +VH LW + GEFDDYI PK +GYQSLHTAV GP G LEVQIR
Sbjct: 265 ------ITDCYAALGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKTLEVQIR 318
Query: 514 TQKMHEYAEHGLAAHWLYKETGN 536
T MH E G+AAHW YKE G+
Sbjct: 319 THAMHRANELGVAAHWRYKEGGS 341
>gi|332284244|ref|YP_004416155.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Pusillimonas sp. T7-7]
gi|330428197|gb|AEC19531.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Pusillimonas sp. T7-7]
Length = 756
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A FA +AH GQFR +G+PY++H I I A K D+++A +LHDV+
Sbjct: 65 ERIKEAYRFADQAHLGQFRASGEPYISHPITVTEICA-----GWKLDADSLMAALLHDVI 119
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E+FG +V+++V G+S+L + T ++A R ML
Sbjct: 120 EDQGISKQELAEKFGTDVSEIVDGLSKLD------------RLEFATKAEQQAESFRKML 167
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL AL EL+
Sbjct: 168 LAMARDVRVILIKLADRLHNMRTLGAVAPEKRRRIARETLEIYTPIAHRLGLNALFRELQ 227
Query: 282 DLCFAVLQ 289
DLCF +
Sbjct: 228 DLCFQAIH 235
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R KSLYSI++KM + V D RV+V + CY L
Sbjct: 272 GIEAEVSGREKSLYSIYTKMVEQKKTFSDVLDIYGFRVIVH---------TLPECYLALG 322
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ M AE G+A+H
Sbjct: 323 TLHQLYRPVPGKFKDYIAIPKLNGYQSLHTTLVGPYGTPVEFQFRTRDMDHIAEEGVASH 382
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK+ L + DI++ + S + +H + DLF
Sbjct: 383 WLYKDDDVSLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 428
>gi|258539745|ref|YP_003174244.1| GTP pyrophosphokinase [Lactobacillus rhamnosus Lc 705]
gi|257151421|emb|CAR90393.1| GTP pyrophosphokinase [Lactobacillus rhamnosus Lc 705]
Length = 741
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K +TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPETVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K +LEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWKLEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
>gi|116495022|ref|YP_806756.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei ATCC 334]
gi|116105172|gb|ABJ70314.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus casei ATCC 334]
Length = 742
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA H Q RK+G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG IEE FG +VA +V GV++LS + + + E A + R MLL
Sbjct: 83 TNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKD------------ELAENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELEDL
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDL 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KMR K ++YD A+RV+ I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVIT---------ETIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQS+HT V GP G LEVQIRT++MH AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKE 348
Query: 534 ----------TGNKLQSISSMDESDIEASSS 554
TG KL + E E S +
Sbjct: 349 GQTSKVEYDKTGKKLDIFREILELQDETSDA 379
>gi|145346824|ref|XP_001417882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578110|gb|ABO96175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 766
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 122/465 (26%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F +V+ A+ A AH GQ RK+G+PY+TH + ILA + + +++VAG+LH
Sbjct: 49 FERAEVRDALEVAFNAHDGQARKSGEPYITHPVAVAAILAEM-----ELDHESLVAGLLH 103
Query: 159 DVVDDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
D V+D + S+E+ +G V ++V G +++S ++ L + + +N + ++ DL
Sbjct: 104 DTVEDTDAVTFESLEKRYGTAVRRIVEGETKVSKVSSSLSKESQ-QINGTSAEDVKSEDL 162
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
M L M ++ R++++KLADRLHNMRT+ L P K +A ETL
Sbjct: 163 AQMFLAMTEEVRIIIVKLADRLHNMRTLEGLKPEKRVKIANETL---------------- 206
Query: 278 AELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHV 337
L FA L A L M+ +N + +D SF +
Sbjct: 207 -----LVFAPL---AKLLGMYKVKNEL---------------------EDLSFRYANP-- 235
Query: 338 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALE 397
D ++ +R +L+K E+ V+Q A + L
Sbjct: 236 -------------DAYAEMSRRCD---ELSKQQES-----VIQRAAVTL----------- 263
Query: 398 KELLISTSYIPG--MEVTLSSRLKSLYSIFSKM----RRK-------DVGIHKVYDARAL 444
+E + ++ G + VT+ ++ K LY + K+ RR I +++ L
Sbjct: 264 QETMQGDDFLRGNTVGVTIQAKAKELYGLHRKLSAGGRRSGSALNGDSKNIDDIFEVAQL 323
Query: 445 RVVVGDKNGTLHG--------PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSL 496
RV++ D G + G A + CY +L IVH +W P+ G DYI PK +GY++L
Sbjct: 324 RVILHD-TGAMAGMTGEARRLQASRVCYHVLGIVHAMWPPVPGNMKDYIATPKLNGYKAL 382
Query: 497 HTAV-------QGPDGS-------ALEVQIRTQKMHEYAEHGLAA 527
HT + P G +E+ IRT+ MH AE+G+AA
Sbjct: 383 HTVILPISPDDANPTGGIEETPVFPMEIMIRTEAMHILAENGIAA 427
>gi|152995282|ref|YP_001340117.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas sp. MWYL1]
gi|150836206|gb|ABR70182.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas sp. MWYL1]
Length = 749
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 11/137 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L +VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLGVVHNL 311
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WRPIPQEFDDYISNPKSNGYQSLHTAVIGPQGRALEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 534 TGNKLQSISSMDESDIE 550
G L S SS E ++
Sbjct: 371 -GTDLSSNSSSYEEKLQ 386
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D++VA L+ VV + + + E FG +V+ +V GV ++ +++
Sbjct: 68 LEMVEILSGFRADQDSLVAAALYRVVREDQLPISRVTEMFGRKVSSIVEGVMKMGEVSKN 127
Query: 196 LRRHRRINVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253
L V LG E LR ML+ ++DD RVVLIKLA+R ++ +
Sbjct: 128 LTADSAAEV----LGSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQNEERR 183
Query: 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
AVA E ++ LA RLG+ +K ELEDL F L
Sbjct: 184 VAVALEVQSVYAPLAHRLGIGHIKWELEDLSFRYL 218
>gi|221633684|ref|YP_002522910.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
gi|221157017|gb|ACM06144.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
Length = 720
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 8/193 (4%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + E + A A+ AH G R++G+PYL+H + ILA L + +T+ A +
Sbjct: 10 PNADLELIHHAFELARSAHAGMRRRSGEPYLSHPLAVALILADL-----QLDQETIAAAL 64
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDV++D ++ + E FG VA+LV GV++L I +L + +++ + + +A
Sbjct: 65 LHDVLEDTDVTIEQLRERFGPRVARLVDGVTKLGKI-RLSPENEPVSLEREKI--RQAES 121
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR MLL M +D VVLIKLADRLHNMRT+ LPP K R +A+ET+ I+ LA+RLG+ L
Sbjct: 122 LRKMLLAMAEDVGVVLIKLADRLHNMRTLDHLPPEKQRRIARETMEIYAPLANRLGIGQL 181
Query: 277 KAELEDLCFAVLQ 289
KAELEDL F L+
Sbjct: 182 KAELEDLAFKYLE 194
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K + SI KMR K ++YD +RV+V ++ CY+ L
Sbjct: 231 GIRAVVTGREKHIASIARKMREKQRNFDEIYDVLGIRVIVDEQRD---------CYAALA 281
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H +W PI G+FDDYI NPK + Y+SLHTAV GP G LEVQIRT +MH AE+G+AAH
Sbjct: 282 IIHGMWHPIPGQFDDYIANPKENLYRSLHTAVIGPRGIPLEVQIRTHEMHREAEYGIAAH 341
Query: 529 WLYKE 533
W YKE
Sbjct: 342 WRYKE 346
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 627 QIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQIT 686
Q C+ A A ++ W PG D K L R H R +P +QI
Sbjct: 273 QRDCYAALAIIHGM----WHPIPGQFDDYIANPKENLYRS--LHTAVIGPRGIPLEVQIR 326
Query: 687 HLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQ 746
E+EY ++A + R + + P S + SI K+ R +L W ++
Sbjct: 327 THEMHREAEYG--IAAHW-----------RYKEQLKPDSGDRSIEAKIAWFRQILEWRDE 373
Query: 747 LRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK----VGL 802
L + ++P E++ V P G+++ L +G+T D A + VG
Sbjct: 374 LLDAQEF--------VDSVKQDLLP-EMIYVFTPKGDVVELPAGATPIDFAYRIHTEVGH 424
Query: 803 EGKLVLVNGQLVLPNTELKDGDIVEV 828
+ VNGQ+V N +L++G +V++
Sbjct: 425 QCVGAKVNGQIVPLNYKLQNGQVVQI 450
>gi|297814083|ref|XP_002874925.1| hypothetical protein ARALYDRAFT_490346 [Arabidopsis lyrata subsp.
lyrata]
gi|297320762|gb|EFH51184.1| hypothetical protein ARALYDRAFT_490346 [Arabidopsis lyrata subsp.
lyrata]
Length = 883
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 21/224 (9%)
Query: 63 ASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKT 122
+SGA V+ LW L ++ P E VQK + A AHHGQ R++
Sbjct: 118 SSGASDDVTVETLWEDLFPS----------ISYLPCKELEFVQKGLKLAFEAHHGQKRRS 167
Query: 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA-CESLGSIEEEFGDEVAK 181
G+P++ H + RIL L + +++VAG+LHD V+D + IEEEFG V
Sbjct: 168 GEPFIIHPVAVARILGEL-----ELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRH 222
Query: 182 LVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHN 241
+V G +++S + +L + ++ +A+DLR M L M D+ RV+++KLADRLHN
Sbjct: 223 IVEGETKVSKLGKL-----KCKTESESIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHN 277
Query: 242 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
MRT+ +PP K ++A ETL ++ LA LG++++K+ELE+L F
Sbjct: 278 MRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSELENLSF 321
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYD--ARALRVVVGDKNGTLHGPAI---QCCYSLLDIV 470
S K YSI+ K K G Y+ A+ LR+VV K GP Q CY +L +V
Sbjct: 375 SVCKETYSIY-KAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLGLV 433
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLAA 527
H +W PI DYI PKP+GYQSLHT V LEVQIRT++M AE G+A
Sbjct: 434 HEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAV 493
Query: 528 HW 529
++
Sbjct: 494 YY 495
>gi|110742286|dbj|BAE99068.1| RSH1 [Arabidopsis thaliana]
Length = 884
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQK + A AHHGQ R++G+P++ H + RIL L + +++VAG+LHD V
Sbjct: 148 EFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGEL-----ELDWESIVAGLLHDTV 202
Query: 162 DDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
+D + IEEEFG V +V G +++S + +L + T+ +A+DLR M
Sbjct: 203 EDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-----KCKTESETIQDVKADDLRQM 257
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L M D+ RV+++KLADRLHNMRT+ +PP K ++A ETL ++ LA LG++++K+EL
Sbjct: 258 FLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSEL 317
Query: 281 EDLCF 285
E+L F
Sbjct: 318 ENLSF 322
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYD--ARALRVVVGDKNGTLHGPAI---QCCYSLLDIV 470
S K YSI+ K K G Y+ A+ LR+VV K GP Q CY +L +V
Sbjct: 376 SVCKETYSIY-KAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLGLV 434
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLAA 527
H +W PI DYI PKP+GYQSLHT V LEVQIRT++M AE +A
Sbjct: 435 HEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERDIAV 494
Query: 528 HW 529
++
Sbjct: 495 YY 496
>gi|422416024|ref|ZP_16492981.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|423100605|ref|ZP_17088312.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
gi|313623673|gb|EFR93827.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|370792829|gb|EHN60672.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
Length = 738
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG+EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGEEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|300914191|ref|ZP_07131507.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307724574|ref|YP_003904325.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter sp. X513]
gi|300889126|gb|EFK84272.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307581635|gb|ADN55034.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X513]
Length = 719
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHDV++D
Sbjct: 22 IYKAYDFAVNAHDGQIRNSGEPYIIHPIEVAYILAEL-----ELDITTIAAGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ G + E FG E+A LV GV++L I + V Q +A ++R ML+
Sbjct: 77 TDVTYGQLLEYFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRKMLIA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K ELEDL
Sbjct: 125 MAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDL 184
Query: 284 CFAVLQ 289
C L
Sbjct: 185 CLRYLH 190
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 786
E + K+ LR +L W+++L+ ++ K + D V V P G+++
Sbjct: 347 EDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDVIN 397
Query: 787 LRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 398 LPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|373451938|ref|ZP_09543856.1| RelA/SpoT family protein [Eubacterium sp. 3_1_31]
gi|371967370|gb|EHO84841.1| RelA/SpoT family protein [Eubacterium sp. 3_1_31]
Length = 738
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 27/194 (13%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G ILAML +G + T+ AG+LHD
Sbjct: 30 NIDLITRAFLCAEKNHAGQYRKSGEPYIIHAIQVGYILAML--RTGPK---TIAAGLLHD 84
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 214
VV+D L I E FG+EVA LV V+++ G L ++ A
Sbjct: 85 VVEDCDVCLEQISEMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 127
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++ R + + M D RV+LIKL+DRLHNMRT+ + P K + +A ETL ++ +A RLG+
Sbjct: 128 SNHRKIFIAMAKDVRVILIKLSDRLHNMRTLQYMTPQKQQKIASETLEVYAPIAHRLGIS 187
Query: 275 ALKAELEDLCFAVL 288
+K ELEDLCF L
Sbjct: 188 DIKNELEDLCFQYL 201
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 24/167 (14%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R++ CY +L +H + P
Sbjct: 247 RSKHLYSIYKKMITKNKRFEEILDLLAIRIITDTDTA---------CYEILGYIHAKYRP 297
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK + YQSLHT + DG+ EVQIRT+ M E AE G+AAHW YKE N
Sbjct: 298 IPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTESMDEVAEQGIAAHWRYKENLN 357
Query: 537 KLQSISSMDESDIEAS-------SSLSKDTDDH-----NPLDTDLFQ 571
+ + + +IE S +S D +D N L D+F+
Sbjct: 358 GGREVH---QKEIEEQLHWFKDFSVMSDDVNDDAMEYMNLLQKDIFE 401
>gi|42570124|ref|NP_849287.2| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
gi|332656748|gb|AEE82148.1| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
Length = 884
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQK + A AHHGQ R++G+P++ H + RIL L + +++VAG+LHD V
Sbjct: 148 EFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGEL-----ELDWESIVAGLLHDTV 202
Query: 162 DDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
+D + IEEEFG V +V G +++S + +L + T+ +A+DLR M
Sbjct: 203 EDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-----KCKTESETIQDVKADDLRQM 257
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L M D+ RV+++KLADRLHNMRT+ +PP K ++A ETL ++ LA LG++++K+EL
Sbjct: 258 FLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSEL 317
Query: 281 EDLCF 285
E+L F
Sbjct: 318 ENLSF 322
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYD--ARALRVVVGDKNGTLHGPAI---QCCYSLLDIV 470
S K YSI+ K K G Y+ A+ LR+VV K GP Q CY +L +V
Sbjct: 376 SVCKETYSIY-KAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLGLV 434
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLAA 527
H +W PI DYI PKP+GYQSLHT V LEVQIRT++M AE G+A
Sbjct: 435 HEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAV 494
Query: 528 HW 529
++
Sbjct: 495 YY 496
>gi|375264179|ref|YP_005021622.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. EJY3]
gi|369839503|gb|AEX20647.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. EJY3]
Length = 706
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVSKEDLEEQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 13/130 (10%)
Query: 411 EVTLSSRL----KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
+V LSSR+ K+L+SI++KM+ K+ H + D A RVVV + CY +
Sbjct: 226 DVGLSSRVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRV 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+A
Sbjct: 277 LGQVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVA 336
Query: 527 AHWLYKETGN 536
AHW YK+ G+
Sbjct: 337 AHWSYKDKGD 346
>gi|357019197|ref|ZP_09081453.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium thermoresistibile
ATCC 19527]
gi|356481057|gb|EHI14169.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium thermoresistibile
ATCC 19527]
Length = 777
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +QKA A+R H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 62 YPKADLSLLQKAYEVAERRHADQLRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 116
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + EFG EVA LV GV++L + LG E
Sbjct: 117 LLHDTVEDTGYSLEELTAEFGSEVAHLVDGVTKLDKV---------------VLGSAAEG 161
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 162 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 221
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 222 TVKWELEDLAFAILH 236
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K +YD A+R++ + I+ CY+ + +
Sbjct: 274 INAVVEGRPKHYWSIYQKMIVKGRDFDDIYDLVAVRILCDE---------IRDCYAAVGV 324
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE+G+AAHW
Sbjct: 325 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTHDMHRTAEYGIAAHW 384
Query: 530 LYKE 533
YKE
Sbjct: 385 RYKE 388
>gi|18411893|ref|NP_567226.1| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
gi|7141304|gb|AAF37281.1| RSH1 [Arabidopsis thaliana]
gi|332656747|gb|AEE82147.1| RelA-SpoT like protein RSH1 [Arabidopsis thaliana]
Length = 883
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQK + A AHHGQ R++G+P++ H + RIL L + +++VAG+LHD V
Sbjct: 148 EFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGEL-----ELDWESIVAGLLHDTV 202
Query: 162 DDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
+D + IEEEFG V +V G +++S + +L + T+ +A+DLR M
Sbjct: 203 EDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-----KCKTESETIQDVKADDLRQM 257
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
L M D+ RV+++KLADRLHNMRT+ +PP K ++A ETL ++ LA LG++++K+EL
Sbjct: 258 FLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSEL 317
Query: 281 EDLCF 285
E+L F
Sbjct: 318 ENLSF 322
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI---QCCYSLLDIVHR 472
S K YSI+ + I+ LR+VV K GP Q CY +L +VH
Sbjct: 376 SVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPSVGVGPLCSPQQICYHVLGLVHE 435
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQG---PDGSALEVQIRTQKMHEYAEHGLAAHW 529
+W PI DYI PKP+GYQSLHT V LEVQIRT++M AE G+A ++
Sbjct: 436 IWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAVYY 495
>gi|441513494|ref|ZP_20995324.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia amicalis NBRC 100051]
gi|441451792|dbj|GAC53285.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia amicalis NBRC 100051]
Length = 789
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 75 YPKADVALLQRAYDVAEERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E +FG EVA LV GV++L + LG EA
Sbjct: 130 LLHDTVEDTGYSLQALERDFGPEVAHLVDGVTKLDKV---------------ALGSAAEA 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 235 TVKWELEDLSFAILH 249
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 287 IHATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEEDRD---------CYAAVGV 337
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 338 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 397
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE G + +S D ++I+
Sbjct: 398 RYKENGYR-KSGKKSDTTEID 417
>gi|56421113|ref|YP_148431.1| GTP pyrophosphokinase [Geobacillus kaustophilus HTA426]
gi|375009672|ref|YP_004983305.1| GTP pyrophosphokinase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56380955|dbj|BAD76863.1| GTP pyrophosphokinase (ppGpp synthetase) [Geobacillus kaustophilus
HTA426]
gi|359288521|gb|AEV20205.1| GTP pyrophosphokinase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 732
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH QFRK+G+PY+ H I IL L K T+ AG LHDV++D
Sbjct: 28 LKKAYEFAKHAHRDQFRKSGEPYIIHPIQVAGILVDL-----KMDATTIAAGFLHDVIED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E EFG EVA LV GV++L + + ++A + R M L
Sbjct: 83 TEATKEDLEREFGAEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMFLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|258405012|ref|YP_003197754.1| (p)ppGpp synthetase I SpoT/RelA [Desulfohalobium retbaense DSM
5692]
gi|257797239|gb|ACV68176.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfohalobium retbaense DSM
5692]
Length = 733
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 114/186 (61%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+QKA F+ AH GQ R +G+PYL+H + ILA L + T+ AG+LHD ++D
Sbjct: 23 IQKAYVFSASAHAGQRRLSGEPYLSHPLEVAHILAEL-----RLDAPTIAAGLLHDTLED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ +EE+FG+EVA++V GV+++ V + +A ++R M+L
Sbjct: 78 TQSNVSDLEEQFGEEVAQIVEGVTKIG------------KVRFTSKEEAQAENIRKMILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHNMRT+ K R ++QET+ I+ LA+RLGL+ +K +LED+
Sbjct: 126 MAEDIRVIIVKLADRLHNMRTLQHQKGIKQRLISQETMEIYAPLANRLGLYRVKVQLEDI 185
Query: 284 CFAVLQ 289
F L+
Sbjct: 186 SFQYLR 191
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 12/136 (8%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
++ + IPG +S R K LYSIF KM+R+ + + +V+D A RV++ ++
Sbjct: 223 ILDENSIPG---RVSGRQKHLYSIFHKMQRQGLSLDQVHDLVAFRVILK---------SV 270
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY++L ++H +W P+ G F DYI PK + YQSLHT V GPDG +E+QIRT++MHE
Sbjct: 271 RDCYAVLGLIHSIWKPVPGRFKDYISMPKANMYQSLHTTVIGPDGERIEIQIRTEEMHEI 330
Query: 521 AEHGLAAHWLYKETGN 536
E+G+AAHW YK+ N
Sbjct: 331 NEYGIAAHWKYKDGSN 346
>gi|336424063|ref|ZP_08604110.1| hypothetical protein HMPREF0994_00116 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336012840|gb|EGN42733.1| hypothetical protein HMPREF0994_00116 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 809
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 10/188 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+PY+ H + ILA L + +T+ AG+LHDVV+D
Sbjct: 86 IEKAYKIAYAAHEGQVRKSGEPYIIHPLCVAIILADL-----ELDKETIEAGLLHDVVED 140
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+ IE+EFG +VA LV GV++L I+ + N T +E A +LR M
Sbjct: 141 TIMTEAEIEKEFGPDVALLVDGVTKLQQID---FPSDKGNGENKTADQQEMQAENLRKMF 197
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ PPAK + +A+ET+ I+ +A RLG+ +K EL+
Sbjct: 198 LAMAKDIRVIMIKLADRLHNMRTLKYQPPAKQQKIARETMEIYAPIAQRLGISKIKVELD 257
Query: 282 DLCFAVLQ 289
DL L+
Sbjct: 258 DLSLKYLE 265
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R+K +SI+ KM+ + + ++YD A+R++V +++ CY+ L
Sbjct: 302 GIKSQIDGRVKHFFSIYKKMKNQSKTLDQIYDLFAVRIIVD---------SVKDCYAALG 352
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PK + YQSLHT V G G E+QIRT +MH+ AE G+AAH
Sbjct: 353 VIHEMYKPIPGRFKDYIAMPKANMYQSLHTTVIGSSGQPFEIQIRTMEMHKAAEFGIAAH 412
Query: 529 WLYKETGN 536
W YKE +
Sbjct: 413 WKYKEASD 420
>gi|451819384|ref|YP_007455585.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785363|gb|AGF56331.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 737
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 116/190 (61%), Gaps = 14/190 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V+KA FA+ AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 DMVKKAYYFAEDAHKEQKRQSGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + F +E+ L+ GV++L+ + ++ + T ++A+++R ML
Sbjct: 74 EDTEFSYEETVKLFNEEIGNLIEGVTKLTRLGEMEYK---------TKEEQQADNVRKML 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 125 LAMAKDIRVIIIKLADRLHNMRTLKFMPEKKQKNKAKETLDIYAPLAHRLGMSKIKWELE 184
Query: 282 DLCFAVLQMR 291
DLCF L +
Sbjct: 185 DLCFRYLHEK 194
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ I +++D A+R++V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVNKNKSIEQIFDLTAIRILVN---------SVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|343924320|ref|ZP_08763871.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia alkanivorans NBRC
16433]
gi|343765754|dbj|GAA10797.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia alkanivorans NBRC
16433]
Length = 787
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 73 YPKADVALLQRAYDVAEERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E +FG EVA LV GV++L + LG EA
Sbjct: 128 LLHDTVEDTGYSLQALERDFGQEVAHLVDGVTKLDKV---------------ALGSAAEA 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 233 TVKWELEDLSFAILH 247
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 285 IQATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEEDRD---------CYAAVGV 335
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 336 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 395
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE+G + +S D ++I+
Sbjct: 396 RYKESGYR-KSGKKSDTAEID 415
>gi|315303282|ref|ZP_07873919.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
gi|313628349|gb|EFR96845.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
Length = 738
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEAFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMTEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DY+ PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYVAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|118467123|ref|YP_882646.1| GTP pyrophosphokinase [Mycobacterium avium 104]
gi|118168410|gb|ABK69307.1| GTP pyrophosphokinase [Mycobacterium avium 104]
Length = 791
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A + H Q R +GDPY+TH + ILA L S T+VA
Sbjct: 76 YPKANVQLLQRAFEVADQRHASQLRHSGDPYITHPLAVATILAELGMDS-----TTLVAA 130
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EEFG+EV LV GV++L + LG E
Sbjct: 131 LLHDTVEDTGYTLAQLSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 175
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 176 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 235
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 236 SVKWELEDLSFAILH 250
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 279 IINTLNASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 329
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 330 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 389
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 390 AEYGIAAHWRYKEAKGR 406
>gi|302874945|ref|YP_003843578.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium cellulovorans 743B]
gi|307690437|ref|ZP_07632883.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium cellulovorans 743B]
gi|302577802|gb|ADL51814.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium cellulovorans 743B]
Length = 724
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 111/190 (58%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E ++KA F ++AH GQ R +G+ Y H + +IL + + T+VAG+LHD
Sbjct: 17 NKELIEKAYFFTEKAHEGQKRLSGEAYFIHPVEVAKILTEMGMDTA-----TIVAGLLHD 71
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
VV+D + + EF EVA LV GV++L I H R T +A+++R
Sbjct: 72 VVEDTDFTYEDMVREFTKEVADLVDGVTKLDKI------HYR------TKEEAQADNIRK 119
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL M D RV+LIKLADRLHNMRTI P K + +A+ET+ I+ LA RLG++ +K E
Sbjct: 120 MLLAMTKDIRVILIKLADRLHNMRTIKFQSPDKQKEIAKETMDIYAPLAHRLGIFKIKWE 179
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 180 LEDLCLRYLH 189
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
LI+ + + R K YSI+ KM K+ + +++D A+R++V I
Sbjct: 218 LINNLGASNIHADIDGRPKHFYSIYKKMVNKNKSLDQIFDLMAVRILV---------KTI 268
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ L IVH ++ PI G F DYI PKP+ YQSLHT V +G E+QIRT MH+
Sbjct: 269 KDCYATLGIVHTMYKPIPGRFKDYIAMPKPNMYQSLHTTVFAKNGKPFEIQIRTFDMHKT 328
Query: 521 AEHGLAAHWLYKETGN 536
AE G+AAHW YKE G+
Sbjct: 329 AEFGIAAHWKYKEGGS 344
>gi|261418406|ref|YP_003252088.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus sp. Y412MC61]
gi|297529258|ref|YP_003670533.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus sp. C56-T3]
gi|319767635|ref|YP_004133136.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus sp. Y412MC52]
gi|448238857|ref|YP_007402915.1| GTP pyrophosphokinase [Geobacillus sp. GHH01]
gi|261374863|gb|ACX77606.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. Y412MC61]
gi|297252510|gb|ADI25956.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. C56-T3]
gi|317112501|gb|ADU94993.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. Y412MC52]
gi|445207699|gb|AGE23164.1| GTP pyrophosphokinase [Geobacillus sp. GHH01]
Length = 732
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH QFRK+G+PY+ H I IL L K T+ AG LHDV++D
Sbjct: 28 LKKAYEFAKHAHRDQFRKSGEPYIIHPIQVAGILVDL-----KMDATTIAAGFLHDVIED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E EFG EVA LV GV++L + + ++A + R M L
Sbjct: 83 TEATKEDLEREFGAEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMFLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|282857439|ref|ZP_06266672.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
gi|282584724|gb|EFB90059.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
Length = 816
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 99/169 (58%), Gaps = 16/169 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSIF KM RK + + ++YD ALRV+V D + CY++L
Sbjct: 325 GIEAHIKGRAKHFYSIFEKMNRKKLSVEQLYDLLALRVIVND---------VTTCYTVLG 375
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G+FDDYI NPK + Y+SLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 376 IVHTLWKPIPGQFDDYIANPKNNMYRSLHTTVMGPQGEPLEVQIRTWEMHWLAEYGVAAH 435
Query: 529 WLYK-------ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W YK E KL+ I E+ E +S + + L +D+F
Sbjct: 436 WRYKEGQGHIDELDQKLEWIRKTLENGPETNSQEFMERLRDDVLTSDVF 484
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+Q+ +A+ FA +AH Q R +G+PY+ H ++ ILA + + + T+ AG+LHDV+
Sbjct: 118 KQLGEALVFAAQAHGDQMRASGEPYVIHPVYVTSILADM-----RMDLPTLQAGLLHDVL 172
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++ FG V LV GV++L + T +A +LR M
Sbjct: 173 EDTPVTADEMKNRFGATVEMLVDGVTKLG------------KLPFKTFEDYQAENLRKMF 220
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RVVLIKLADR HNMR++ AL K + +A+ETL I+ LA RLG++ +K LE
Sbjct: 221 LVMAKDIRVVLIKLADRTHNMRSLGALRRDKQQRIAKETLEIYAPLAHRLGIYQVKRTLE 280
Query: 282 DLCF 285
DL F
Sbjct: 281 DLAF 284
>gi|441508395|ref|ZP_20990319.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia aichiensis NBRC 108223]
gi|441447423|dbj|GAC48280.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia aichiensis NBRC 108223]
Length = 830
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q A A H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 115 YPKADIALLQHAYDVADERHRGQDRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 169
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E EFG EVA LV GV++L + LG EA
Sbjct: 170 LLHDTVEDTGYSLEALESEFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 214
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 215 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 274
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 275 TVKWELEDLSFAILH 289
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ D ++ CY+ + +VH
Sbjct: 330 TVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCDD---------VRDCYAAVGVVHS 380
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW YK
Sbjct: 381 LWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTNDMHRTAEFGIAAHWRYK 440
Query: 533 ETGNKLQSISSMDESDIE 550
E G + + D ++I+
Sbjct: 441 ENGYRDRKGRKSDAAEID 458
>gi|387769721|ref|ZP_10125924.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Pasteurella bettyae CCUG 2042]
gi|386906336|gb|EIJ71072.1| guanosine 3',5'-bis(pyrophosphate) 3'-pyrophosphohydrolase
[Pasteurella bettyae CCUG 2042]
Length = 707
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +++A A+ AH GQFR +G+PY+TH + I+A + + + ++A +LHDV+
Sbjct: 21 ELIKRAFVVARDAHEGQFRSSGEPYITHPVAVASIIADM-----RLDHEAIMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG VA++V GVS+L ++L R R+ +A R M+
Sbjct: 76 EDTPYTEEQLTKEFGKSVAEIVNGVSKL---DKLKFRTRQ---------EAQAESFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMTKDIRVVLIKLADRTHNMRTLGALRPEKRRRIAKETLEIYSPLAHRLGIERVKNELE 183
Query: 282 DLCFAVLQ 289
DLCF +
Sbjct: 184 DLCFQAMH 191
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 411 EVTLSSRL----KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
EV + +R+ K L+ I+ MR K+ + D R++V ++ CY +
Sbjct: 226 EVGIPARVFIEEKPLFYIYQNMRSKNQQFRSIMDISNFRIIVD---------SVDNCYRV 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L +H L+ P G DYI PK +GYQ+LHT+ GP G +E+QIRT++M+ AE G+
Sbjct: 277 LGQMHNLFKPRSGMIKDYIAVPKANGYQALHTSTIGPRGVVVEIQIRTEEMNLIAELGVT 336
Query: 527 AHWLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
AHW+YK G + + + +S IE S + + +DLF
Sbjct: 337 AHWIYKPDGKNDSTTAQIKAQHWLQSIIELQQSAGNSFEFIESVKSDLF 385
>gi|145633449|ref|ZP_01789179.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
3655]
gi|229845420|ref|ZP_04465550.1| glutamate racemase [Haemophilus influenzae 6P18H1]
gi|144986012|gb|EDJ92614.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Haemophilus influenzae
3655]
gi|229811616|gb|EEP47315.1| glutamate racemase [Haemophilus influenzae 6P18H1]
Length = 704
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E +++A A+ AH GQFR +G+PY+TH + I+A L +
Sbjct: 11 IQGYLPADKIELIKRAFVIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDH-----EA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + +++EFG VA++V GVS+L + R+ ++
Sbjct: 66 VMAALLHDVIEDTPYTEEQLKDEFGASVAEIVDGVSKLDKLKFRTRQEAQVE-------- 117
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA RL
Sbjct: 118 ----NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLSFQAMH 191
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 236 REKHLYEIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 287 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 345
>gi|409390045|ref|ZP_11241816.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3'-pyrophosphohydrolase [Gordonia rubripertincta NBRC
101908]
gi|403199872|dbj|GAB85050.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3'-pyrophosphohydrolase [Gordonia rubripertincta NBRC
101908]
Length = 784
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 70 YPKADVALLQRAYDVAEERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 124
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E +FG EVA LV GV++L + LG EA
Sbjct: 125 LLHDTVEDTGYSLQALERDFGQEVAHLVDGVTKLDKV---------------ALGSAAEA 169
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 170 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 229
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 230 TVKWELEDLSFAILH 244
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 282 IQATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEEDRD---------CYAAVGV 332
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 333 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 392
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE+G + +S D ++I+
Sbjct: 393 RYKESGYR-KSGKKSDTAEID 412
>gi|217970681|ref|YP_002355915.1| (p)ppGpp synthetase I SpoT/RelA [Thauera sp. MZ1T]
gi|217508008|gb|ACK55019.1| (p)ppGpp synthetase I, SpoT/RelA [Thauera sp. MZ1T]
Length = 734
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 88/125 (70%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K +YSI++KMR+K + +V+D RALRV+V P I+ CY++L
Sbjct: 246 GIEAEITGRAKHIYSIYNKMRKKRLDFSQVFDIRALRVLV---------PEIKDCYTVLG 296
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH++W PI EFDDYI PK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVHQMWQPIAKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTFDMHKHAELGVAAH 356
Query: 529 WLYKE 533
W YKE
Sbjct: 357 WRYKE 361
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++ A+ + + G+ TG+P TH I A LI +S + +T VA +L
Sbjct: 30 EHIEAALEWIADLYEGKVLGTGEPTWTHAIG-----AALIAASLRLDAETRVAALLFAAW 84
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
++ IE FG + LV G+ +L+ + L R + + + LR ML
Sbjct: 85 EELEAPAEEIEARFGPAITALVRGLHKLNGLRVLTRLTTSASAPEI---RAQTEVLRKML 141
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV+D RVVL++LA R +R LP VA+E+L I+ LA+RLG+W +K ELE
Sbjct: 142 LAMVEDIRVVLVRLASRTQTLRFYTDLPGEARVEVARESLDIYAPLANRLGVWQIKWELE 201
Query: 282 DLCFAVLQ 289
DL F ++
Sbjct: 202 DLSFRFIE 209
>gi|348174215|ref|ZP_08881109.1| GTP pyrophosphokinase [Saccharopolyspora spinosa NRRL 18395]
Length = 772
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 109/186 (58%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VAG+LHD V+D
Sbjct: 66 LQRAYDVAEEKHSSQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAGLLHDTVED 120
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL + EFG+EV LV GV++L V G EA +R M++
Sbjct: 121 TDYSLEKLGAEFGEEVGHLVDGVTKLD------------KVKLGAAA--EAETIRKMIIA 166
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 167 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMATIKWELEDL 226
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 227 AFAILQ 232
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 13/137 (9%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + ++D +R++V + ++ CY+ + +VH L
Sbjct: 274 VEGRPKHYYSIHQKMIVRGRDFDDIHDLVGVRILVDE---------VRDCYAAMGVVHAL 324
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 325 WQPMPGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 384
Query: 534 T----GNKLQSISSMDE 546
T G+ +QS +DE
Sbjct: 385 TKGRNGSGVQSAVEVDE 401
>gi|345017525|ref|YP_004819878.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032868|gb|AEM78594.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 719
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAFILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|296170827|ref|ZP_06852392.1| GTP diphosphokinase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894516|gb|EFG74256.1| GTP diphosphokinase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 799
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 110/194 (56%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 84 YPKANLSLLQRAFEVADQRHATQLRHSGDPYITHPLAVANILAEL-----GMDTTTLVAA 138
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D +L + EEFGDEVA LV GV++L V GT E
Sbjct: 139 LLHDTIEDTGYTLEQMSEEFGDEVAHLVDGVTKLD------------RVVLGTAA--EGE 184
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+ +
Sbjct: 185 TIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAS 244
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 245 VKWELEDLSFAILH 258
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 287 IINTLNASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 337
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LE+QIRT+ MH
Sbjct: 338 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEIQIRTRDMHRT 397
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 398 AEYGIAAHWRYKEAKGR 414
>gi|340751522|ref|ZP_08688334.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium mortiferum ATCC 9817]
gi|229420490|gb|EEO35537.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium mortiferum ATCC 9817]
Length = 727
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 113/188 (60%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+++ A FA+ H GQ+RK+G+ Y+ H + +IL + K DT+VAGILHD+V
Sbjct: 21 EKIKLAFFFAEECHEGQYRKSGEDYIMHPVEVTKILIDM-----KMDTDTIVAGILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I+ FG+ VA LV GV++L + GT +E ++R M+
Sbjct: 76 EDTLITLADIKYNFGETVATLVDGVTKLK------------TLPNGTKKQDE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + RV++IKLADRLHNMRT+ + P K +++QETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMAQNLRVIIIKLADRLHNMRTMKYMKPEKQISISQETLDIYAPLAHRLGIAKIKWELE 181
Query: 282 DLCFAVLQ 289
DL L+
Sbjct: 182 DLALRYLK 189
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 399 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 458
E +++ + G++ ++ R K YSI+ KM K+ +YD +R++V D G
Sbjct: 216 ETIVNLLHETGIKGSVKGRFKHFYSIYKKMYEKNKEFDDIYDLMGVRIIV-DTEGE---- 270
Query: 459 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 518
CY+ L ++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT++M
Sbjct: 271 ----CYNTLGVIHSHFKPVPGRFKDYIAVPKSNNYQSIHTTIVGPQGKFIEIQIRTEEMD 326
Query: 519 EYAEHGLAAHWLYKE 533
+ AE G+AAHW YKE
Sbjct: 327 KVAEEGIAAHWSYKE 341
>gi|404497180|ref|YP_006721286.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter metallireducens GS-15]
gi|418066658|ref|ZP_12704018.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter metallireducens RCH3]
gi|78194783|gb|ABB32550.1| GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
[Geobacter metallireducens GS-15]
gi|373560151|gb|EHP86423.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter metallireducens RCH3]
Length = 716
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 19/202 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA + + H GQ R +G+PYL H + +LA L + V TVV G+LHD ++D
Sbjct: 23 VRKAYVYCAKVHQGQTRLSGEPYLVHPMEVAGLLADL-----RLDVPTVVTGLLHDTIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E FG EVA LV GV+++S ++ T +A + R MLL
Sbjct: 78 TLTTREELEGLFGAEVANLVDGVTKIS------------KIHFKTKEESQAENFRKMLLA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+L+KLADRLHNMRT+ P K R++A+ETL I+ +A+RLG+ +K+ELEDL
Sbjct: 126 MANDIRVILVKLADRLHNMRTLQYQPEPKQRSIARETLDIYAPIANRLGISWIKSELEDL 185
Query: 284 CFAVL--QMRADLASMWSPRNR 303
F L Q+ DLAS + + +
Sbjct: 186 SFRYLEPQIYYDLASKVTKKKK 207
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 74/117 (63%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM+ + V I ++YD A+RV+V D I+ CY +L ++H W P
Sbjct: 236 RSKHLYSIWRKMQSRSVDIDQIYDLIAIRVMVND---------IRECYEVLGLIHSTWKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
I G F DYI PK + YQSLHT V GP G +EVQIRT MH AE G+AAHW YKE
Sbjct: 287 IPGRFKDYIAMPKGNMYQSLHTTVIGPHGERMEVQIRTYDMHGVAEAGIAAHWKYKE 343
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 737 LRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAAD 795
LR +L W+++L+ S + K+ + P EV + PNG++ GST D
Sbjct: 358 LRQLLEWQQELQDSHEFMSTVKV---------ELFPEEVYVFT-PNGDVKSFPKGSTPID 407
Query: 796 AAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 828
A + G VNG+LV ELK+GDIVEV
Sbjct: 408 FAYTIHTDLGHRCVGAKVNGKLVPLKYELKNGDIVEV 444
>gi|384565591|ref|ZP_10012695.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora glauca
K62]
gi|384521445|gb|EIE98640.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora glauca
K62]
Length = 781
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 79 LQRAYDVAEELHRDQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 133
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + E+FG++VA+LV GV++L V GT EA +R M++
Sbjct: 134 TGYSVEQLTEDFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 179
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 180 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 239
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 240 AFAILQ 245
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V + ++ CY+ + +VH L
Sbjct: 287 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVDE---------VRDCYAAMGVVHAL 337
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 338 WQPMPGRFKDYIAQPRYGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 397
Query: 534 T 534
T
Sbjct: 398 T 398
>gi|374613064|ref|ZP_09685836.1| (p)ppGpp synthetase I, SpoT/RelA [Mycobacterium tusciae JS617]
gi|373546635|gb|EHP73392.1| (p)ppGpp synthetase I, SpoT/RelA [Mycobacterium tusciae JS617]
Length = 803
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 112/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A H Q R++GDPY+TH + ILA L + T++A
Sbjct: 88 YPKANLTLLQRAYEVADERHADQLRRSGDPYITHPLAVANILAEL-----EMDTTTLIAA 142
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ EEFG EV LV GV++L V GT E
Sbjct: 143 LLHDTVEDTGYTLEALTEEFGTEVGHLVDGVTKLD------------KVALGTAA--EGE 188
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M+L M DPRV++IK+ADRLHNMRT+ LPP K + ++ETL + LA RLG+ +
Sbjct: 189 SIRKMILAMARDPRVLVIKVADRLHNMRTMRFLPPEKQASKSRETLEVIAPLAHRLGMAS 248
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 249 VKWELEDLSFAILH 262
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 300 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 350
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 351 VHSLWQPIAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTIDMHKTAEYGIAAHW 410
Query: 530 LYKETGNK 537
YKE +
Sbjct: 411 RYKEAKGR 418
>gi|329907906|ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
gi|327546888|gb|EGF31806.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
Length = 757
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI++KMR K + ++D RA RV+V D ++ CY++L
Sbjct: 248 GIEAEVFGRPKHIYSIWNKMRGKAIDFSSLHDVRAFRVIVDD---------VKTCYAVLG 298
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH W P+ EFDDYI PKP+GYQSLHT V DG LE+QIRT++MH +AE+G+AAH
Sbjct: 299 IVHDNWAPVPEEFDDYIARPKPNGYQSLHTIVMAEDGRPLEIQIRTKEMHYFAEYGVAAH 358
Query: 529 WLYKETGNKLQSISSMDE 546
W YKE+G + DE
Sbjct: 359 WRYKESGGSNFAAQKYDE 376
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD--V 160
+V + +AF + + G+ TG + LA L + DT +A +L + V
Sbjct: 26 RVAEVLAFVEPVYTGRTVVTGQDACDFSLGVAMTLAAL-----QTDADTRIAALLFELPV 80
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VNQGTLGHEEANDLR 218
+D G IE FG EVA V V ++ +++L + + N + LR
Sbjct: 81 LDPLLA--GQIETRFGKEVAVFVEDVRQMMRLHELTFGQQEVGRGKNAAQQAAAQLETLR 138
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYA--LPPAKARAVAQETLLIWCSLASRLGLWAL 276
MLL M D RVVL++LA R +R + + A+ETL ++ LA+RLG+W L
Sbjct: 139 KMLLAMASDMRVVLVRLASRTTTLRYFAERRIDTEQTYRYARETLDLYAPLANRLGVWQL 198
Query: 277 KAELEDLCFAVLQ 289
K E+EDL F L+
Sbjct: 199 KWEMEDLSFRFLE 211
>gi|323497037|ref|ZP_08102060.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
sinaloensis DSM 21326]
gi|323317881|gb|EGA70869.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
sinaloensis DSM 21326]
Length = 706
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEEQFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+L+SI++KM+ K+ H + D A RVVV D + CY +L
Sbjct: 228 GLKARVFGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVEDAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPSRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK +G +
Sbjct: 339 WSYKGSGER 347
>gi|167037441|ref|YP_001665019.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115854|ref|YP_004186013.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856275|gb|ABY94683.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928945|gb|ADV79630.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 719
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N E + KA FA AH GQ R +G+PY+ H I ILA L + + T+ AG+LHD
Sbjct: 18 NLELIYKAYDFAVNAHEGQMRNSGEPYIVHPIEVAFILADL-----ELDITTIAAGLLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + + E FG E+A LV GV++L I + V Q +A ++R
Sbjct: 73 VIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ------QAENMRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A RLG+ +K E
Sbjct: 121 MLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIAHRLGISKIKWE 180
Query: 280 LEDLCFAVLQ 289
LEDLC L
Sbjct: 181 LEDLCLRYLH 190
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 830
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|296393867|ref|YP_003658751.1| (p)ppGpp synthetase I [Segniliparus rotundus DSM 44985]
gi|296181014|gb|ADG97920.1| (p)ppGpp synthetase I, SpoT/RelA [Segniliparus rotundus DSM 44985]
Length = 797
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 115/196 (58%), Gaps = 23/196 (11%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV--V 153
YP + + KA A+ H GQFR++GDPY+TH + ILA L +DT+ V
Sbjct: 85 YPKASLALLAKAYDIAQARHEGQFRRSGDPYITHPLAVAHILAEL-------GMDTLSLV 137
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHD V+D SL +E +FG +VA +V GV++L ++ G E
Sbjct: 138 AALLHDTVEDTGYSLEELERDFGSDVAHIVDGVTKLD----------KVTWGAGA----E 183
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A +R M++ M DPRV++IK+ADRLHNMRT+ +PP K AQETL + LA RLG+
Sbjct: 184 AETIRKMVIAMARDPRVLVIKVADRLHNMRTMRFMPPEKQVRKAQETLEVIAPLAHRLGM 243
Query: 274 WALKAELEDLCFAVLQ 289
++K ELEDL FAVL
Sbjct: 244 ASVKWELEDLAFAVLH 259
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 9/131 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R K +SI+ KM K ++D LR+V G+ ++ CY+ + +
Sbjct: 297 VDAEVAGRPKHYWSIYQKMIVKGRDFDDIHDLVGLRIVCGE---------VRDCYAAVGV 347
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQ+RTQ+MH AE G+AAHW
Sbjct: 348 VHSLWQPLPGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQLRTQEMHRVAEFGIAAHW 407
Query: 530 LYKETGNKLQS 540
YKE K+ S
Sbjct: 408 RYKENKGKVGS 418
>gi|281418020|ref|ZP_06249040.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum JW20]
gi|281409422|gb|EFB39680.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium thermocellum JW20]
Length = 724
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 113/206 (54%), Gaps = 21/206 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA + AH GQ R++GDP++ H + ILA L + +VAGILHD+V+D
Sbjct: 24 IEKAHNLSLEAHKGQQRESGDPFIVHPMEVANILADL-----ELDCTAIVAGILHDIVED 78
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I E FGDEVA LV GV++L I + +A +LR M L
Sbjct: 79 TSYTIEQIRENFGDEVANLVDGVTKLGKIPYTTKEEL------------QAENLRKMFLA 126
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ +P K A+ETL I+ LA RLG+ +K ELEDL
Sbjct: 127 MAKDIRVILIKLADRLHNMRTLKYMPTEKQIEKAKETLEIYAPLAHRLGISKIKWELEDL 186
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRR 309
C L D + N++ RR
Sbjct: 187 CLRYL----DPKGYYDLVNKIAKKRR 208
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +++ I ++YD A+RV+V ++ CY++L
Sbjct: 229 GIDAHIEGRPKHFYSIYRKMVQQNKTIEQIYDLFAVRVIV---------TTVKDCYAVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH ++ P+ G F DYI PKP+ YQSLHT + G +G EVQIRT +MH AE G+AAH
Sbjct: 280 LVHEIFKPMPGRFKDYIAMPKPNMYQSLHTTLIGHEGVPFEVQIRTWEMHRVAEVGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|312110098|ref|YP_003988414.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus sp. Y4.1MC1]
gi|336234522|ref|YP_004587138.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719137|ref|ZP_17693319.1| (p)ppGpp synthetase I spoT/relA [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215199|gb|ADP73803.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. Y4.1MC1]
gi|335361377|gb|AEH47057.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368040|gb|EID45315.1| (p)ppGpp synthetase I spoT/relA [Geobacillus thermoglucosidans
TNO-09.020]
Length = 731
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 105/187 (56%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA RAH Q+RK+G+PY+ H I IL L K T+ AG LHDVV
Sbjct: 26 EFIKKAYEFADRAHRDQYRKSGEPYIIHPIQVAGILVDL-----KMDPATIAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E EFG EVA LV GV++L + + ++A + R M
Sbjct: 81 EDTEATKEDLEREFGSEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 IYGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|56698035|ref|YP_168406.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Ruegeria
pomeroyi DSS-3]
gi|56679772|gb|AAV96438.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Ruegeria pomeroyi DSS-3]
Length = 730
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 120/218 (55%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N E++ +A F ++ H GQFR +G+PY TH + IL + +R D T++
Sbjct: 36 PKTNAERITRAYEFGQQMHDGQFRHSGEPYFTHPVAVAAIL------TEQRLDDATIITA 89
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S G + E FG+EVA LV GV++L+ N+ + ++A
Sbjct: 90 LLHDTIEDTKASYGQVSELFGEEVAMLVDGVTKLT------------NLQLSSRETKQAE 137
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 138 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPEKQAVKARETMDIYAPLAGRMGMQW 197
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 198 MREELEDLAFRVL----------NPEGRQSIIRRFITL 225
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ KD G ++ D R++ + + CY L
Sbjct: 248 GIEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIITLSE---------EDCYRTLG 298
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 299 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAETGVAAH 358
Query: 529 WLYKETGNKLQSISSMD 545
W Y++ G + Q+ ++D
Sbjct: 359 WSYRD-GVRTQNPFAVD 374
>gi|394988989|ref|ZP_10381824.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
gi|393792368|dbj|GAB71463.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
Length = 728
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
+E L + G+ +S R K +YSI+ KM+RK V +VYD RA+RV+V D
Sbjct: 235 REQLRQELHKNGVVAEVSGRPKHIYSIYKKMKRKGVDFSEVYDVRAVRVLVND------- 287
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
++ CY+ L +VH LW PI GEFDDYI +PK + Y+SLHTAV GP+ ALEVQIRT M
Sbjct: 288 --LKDCYTALGVVHSLWQPIPGEFDDYIAHPKGNDYRSLHTAVVGPEEKALEVQIRTHDM 345
Query: 518 HEYAEHGLAAHWLYKETGNK 537
H +AE G+AAHW YKE G +
Sbjct: 346 HNHAELGVAAHWRYKEGGRQ 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+++VA IL + E L + FG+ VA+LV GV+R+ I++ QG
Sbjct: 74 ESIVAAILQGAAEHDPEVLAKVAAIFGEGVARLVDGVARMGQISEYSAPAGGDKREQGA- 132
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
H E+ LR MLL MV+D RVVLIKLA+R MR + VA E I+ LA+
Sbjct: 133 -HIES--LRKMLLAMVEDIRVVLIKLAERTQAMRELSHADEDTRHRVAHEVQDIFAPLAN 189
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K ELEDL F L+
Sbjct: 190 RLGVWQVKWELEDLSFRYLE 209
>gi|325662331|ref|ZP_08150940.1| hypothetical protein HMPREF0490_01679 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086134|ref|ZP_08335216.1| hypothetical protein HMPREF0987_01519 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471333|gb|EGC74556.1| hypothetical protein HMPREF0490_01679 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406293|gb|EGG85807.1| hypothetical protein HMPREF0987_01519 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 767
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 116/194 (59%), Gaps = 14/194 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA AK+AH GQ RK+G+PY+ H + G ILA L + +T+VAG
Sbjct: 44 HPSADISMIEKAYRIAKQAHEGQKRKSGEPYIIHPLWVGIILAEL-----EMDKETIVAG 98
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHD V+D + IE EFG EVA LV GV++L ++ +V++ L +A
Sbjct: 99 ILHDAVEDTIMTRDDIEREFGAEVALLVEGVTKLGQLSY------SKDVDKMEL---QAE 149
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+++KLADRLHNMRT PP K + A+ET+ I+ +A RLG+
Sbjct: 150 NLRKMFLAMSKDIRVIIVKLADRLHNMRTAQFWPPHKQKEKARETMDIYAPIAQRLGISK 209
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL Q
Sbjct: 210 IKKELDDLALKYYQ 223
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 89/140 (63%), Gaps = 9/140 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R+K +SI+ KM +D + +VYD A+R++V ++ CY+ L +
Sbjct: 261 IQAEVYGRVKHFFSIYKKMVNQDKTVDQVYDLFAVRIIVD---------TVKDCYAALGV 311
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKANMYQSLHTTLMGPAGQPFEIQIRTKEMHKTAEYGIAAHW 371
Query: 530 LYKETGNKLQSISSMDESDI 549
YKE+G+ ++I+ +E +
Sbjct: 372 KYKESGDGKKNIAMQEEEKL 391
>gi|149923136|ref|ZP_01911550.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
gi|149815974|gb|EDM75489.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
Length = 741
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 11/180 (6%)
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
E LE+EL + ++ ++ R K +YSI KMRRK VG ++D A+RV+V D G
Sbjct: 233 ETLERELAEAE-----LDAEVNGRPKHIYSIVKKMRRKGVGFEDIFDVTAVRVIV-DGEG 286
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
+ + CY+ L +VH LW PI EFDDYI PK +GYQSLHTAV GP G LE+QIR
Sbjct: 287 KV---GKRDCYAALGLVHGLWNPIASEFDDYIARPKDNGYQSLHTAVVGPGGEPLEIQIR 343
Query: 514 TQKMHEYAEHGLAAHWLYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 571
T++MH +AE+G+AAHW YKE G K ++ ++ L + L TDLF+
Sbjct: 344 TRQMHLFAEYGVAAHWAYKEGKRGAKQMERFNLLRQLVDWQKQLVDPKELAEALKTDLFE 403
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 178 EVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLAD 237
E L GV RL+ I L E A LR M + M D RVVLI L+D
Sbjct: 106 EAESLREGVERLAAIQW------------NALDEESAESLRRMFVAMAADVRVVLITLSD 153
Query: 238 RLHNMRTIYALPPAKA-RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
RL +R + L A A R +A ET ++ LA+RLG+W LK ELEDL L
Sbjct: 154 RLEVIRDLRTLDDADARRRIATETREVFAPLANRLGIWQLKWELEDLAMREL 205
>gi|10443847|gb|AAG17607.1|AF242653_1 ppGpp synthetase/hydrolase Rel [Geobacillus stearothermophilus ATCC
7953]
Length = 732
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FAK AH QFRK+G+PY+ H I IL L K T+ AG LHDV++D
Sbjct: 28 LKKAYEFAKHAHRDQFRKSGEPYIIHPIQVAGILVDL-----KMDATTIAAGFLHDVIED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E EFG EVA LV GV++L + + ++A + R M L
Sbjct: 83 TEATKEDLEREFGAEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMFLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|392988581|ref|YP_006487174.1| GTP pyrophosphokinase [Enterococcus hirae ATCC 9790]
gi|392336001|gb|AFM70283.1| GTP pyrophosphokinase [Enterococcus hirae ATCC 9790]
Length = 737
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA +A AH GQFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKACDYATAAHDGQFRKSGEPYIIHPIQVAGILADL-----RMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L ++EEFG +VA LV GV++L I HEE A + R ML
Sbjct: 83 TDVTLDDLKEEFGPDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L K R +AQETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETLEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 79/123 (64%), Gaps = 9/123 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGAIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRTQ+MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPAGNPVEIQIRTQEMHEIAEFGVAAHWAYKE 348
Query: 534 TGN 536
N
Sbjct: 349 GKN 351
>gi|293605647|ref|ZP_06688027.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, partial
[Achromobacter piechaudii ATCC 43553]
gi|292816027|gb|EFF75128.1| guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter piechaudii ATCC 43553]
Length = 621
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K V+ + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDVNALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K+LY I+ KM + V D RV+V + CY L
Sbjct: 280 GIEAEVTGREKTLYGIYRKMVDQKKSFSDVLDIYGFRVIVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|326791627|ref|YP_004309448.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium lentocellum DSM 5427]
gi|326542391|gb|ADZ84250.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium lentocellum DSM 5427]
Length = 743
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 15/196 (7%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P N E V++A AK AH Q RK+G+PY+ H + LA L + ++++VAG
Sbjct: 17 HPSDNLEMVERAYQLAKSAHESQLRKSGEPYIIHPLEVACNLADL-----ELDIESIVAG 71
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
+LHDVV+D +L IE F EVA LV GV++L I + + L EE
Sbjct: 72 LLHDVVEDTDYTLEDIERLFNKEVALLVDGVTKLGKI--------QYSAQNKQLQKEEIQ 123
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A + R M L M D RVVLIKLADRLHNM+T+ + PAK + +A+ETL I+ +A RLG+
Sbjct: 124 AENYRKMFLAMAQDIRVVLIKLADRLHNMQTLKFMTPAKQKEIAEETLNIYAPIAHRLGI 183
Query: 274 WALKAELEDLCFAVLQ 289
+KA+LEDL ++
Sbjct: 184 CKIKADLEDLSLRYME 199
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +SI+ K+ K+ + ++YD A+R +V +++ CY +L
Sbjct: 236 GIEAVIEGRPKHFFSIYKKIVNKNKTLDQIYDLFAVRAIV---------KSVKDCYGVLG 286
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H ++ PI G F DYI PKP+ Y+SLHT + G +G+ E+QIRT++MH AE+G+AAH
Sbjct: 287 IIHEMYTPIPGRFKDYIAMPKPNMYRSLHTTLMGEEGTPFEMQIRTEEMHRTAEYGIAAH 346
Query: 529 WLYKE 533
W YKE
Sbjct: 347 WKYKE 351
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 733 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 792
K+ LR +L W+ + S L G D V G+ V V P+GE++ L GST
Sbjct: 365 KLTWLREILEWQRDMSDNQEF-MSALKG------DLDVYGDQVYVFTPSGELLTLPKGST 417
Query: 793 AADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 828
D A + G+ K++ VNG++V + LK+GD VE+
Sbjct: 418 PIDFAYHIHSGVGNKMIGAKVNGKIVTIDYVLKNGDRVEI 457
>gi|378717723|ref|YP_005282612.1| GTP pyrophosphokinase RelA [Gordonia polyisoprenivorans VH2]
gi|375752426|gb|AFA73246.1| GTP pyrophosphokinase RelA [Gordonia polyisoprenivorans VH2]
Length = 801
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQ RK+GDPY+TH + ILA L G + T+VA
Sbjct: 86 YPKADVALLQRAYDVADERHQGQNRKSGDPYITHPLAVATILADL----GMDTI-TLVAA 140
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL +E EFG EV LV GV++L + LG EA
Sbjct: 141 LLHDTVEDTGYSLEQLESEFGAEVTHLVDGVTKLDKV---------------ALGSAAEA 185
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 186 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 245
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 246 TVKWELEDLSFAILH 260
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH
Sbjct: 301 TVEGRPKHYWSIYQKMIVKGREFDDIHDLVGMRILCDE---------VRDCYAAVGVVHS 351
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW YK
Sbjct: 352 LWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTYDMHRTAEFGIAAHWRYK 411
Query: 533 ETGNKLQSISSMDESDIE 550
E+G K + D ++++
Sbjct: 412 ESGYKDRKGRKSDVAEVD 429
>gi|359412257|ref|ZP_09204722.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
gi|357171141|gb|EHI99315.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
Length = 736
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 116/190 (61%), Gaps = 14/190 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ V++A FA++AH Q R++G+PY+ H I ILA L + +T+VAG+LHDV+
Sbjct: 19 DMVKRAYNFAEKAHKEQKRESGEPYIIHPIAVAEILAELGMDT-----NTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S F E+A LV GV++L+ + ++ + T ++A+++R ML
Sbjct: 74 EDTDCSYDETVNLFNAEIADLVDGVTKLTKLGEMEYK---------TKEEQQADNVRKML 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 125 LAMAKDIRVIIIKLADRLHNMRTLKFMPEKKQKNKAKETLDIYAPLAHRLGMSKIKWELE 184
Query: 282 DLCFAVLQMR 291
DLCF L +
Sbjct: 185 DLCFRYLHEK 194
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIQSDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLVN---------SVKDCYGVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 529 WLYKE 533
W YKE
Sbjct: 340 WKYKE 344
>gi|223998738|ref|XP_002289042.1| GTP pyrophosphokinase-like protein [Thalassiosira pseudonana
CCMP1335]
gi|220976150|gb|EED94478.1| GTP pyrophosphokinase-like protein [Thalassiosira pseudonana
CCMP1335]
Length = 505
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 112/189 (59%), Gaps = 13/189 (6%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N +V++A+ A RAH Q RK+G+P++ H + +L S K +TV+AG+LHD
Sbjct: 20 NAAKVKQALRVAYRAHRSQMRKSGEPFIIHPVEVALLL-----SGMKMDAETVMAGLLHD 74
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V+D + +E FG EV +V G +++S + +++ E+A +LR
Sbjct: 75 TVEDTDLTFEQVEAMFGVEVKNIVEGETKVSKLPKIM--------GFSDFADEQAENLRQ 126
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M + M DD R++++KLADRLHNMRT+ + P K + +++ETL I+ LA R+G+W K+E
Sbjct: 127 MFIAMTDDYRIIIVKLADRLHNMRTLRHMKPEKQKKISRETLDIFAPLAHRMGIWQFKSE 186
Query: 280 LEDLCFAVL 288
LED F L
Sbjct: 187 LEDTAFKYL 195
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 8/131 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRK-DVGIHKVYDARALRVVV--GDKNGTLHG--PAIQCCY 464
+E+ + R K LYS++ KM K D ++ + D ALRV++ G+ NG G + CY
Sbjct: 240 VEIEVVGRTKELYSLWHKMEMKHDRNLNHITDLVALRVILKPGESNGKDQGADSGVWLCY 299
Query: 465 SLLDIVHRL--WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 522
+L +V L + P+ + DYI PK +GYQSLHTA+ G ++EVQIRTQ MH+ AE
Sbjct: 300 HVLGLVQHLPGFQPVPTKVKDYISFPKVNGYQSLHTALMY-KGQSVEVQIRTQFMHQVAE 358
Query: 523 HGLAAHWLYKE 533
+G+A+HW YK+
Sbjct: 359 YGMASHWAYKD 369
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 772 GEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVE 827
G+ V V NG+I+ L G+TA DAA ++ GL+ V +NG+ V + ELK+GD+V
Sbjct: 410 GKRVFVFLRNGKILNLARGATAVDAAFQIHTELGLQMHGVEINGKPVPISYELKNGDVVS 469
Query: 828 V 828
+
Sbjct: 470 I 470
>gi|254481349|ref|ZP_05094594.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
gi|214038512|gb|EEB79174.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
Length = 706
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 9/149 (6%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
K LL G+E + R K +YSI+ KM+RK +G +VYD RA+R++V
Sbjct: 208 KALLTDVLQQAGLEFEIEGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV--------- 258
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P I+ CY+ L +VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++M
Sbjct: 259 PEIKDCYATLGLVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTRQM 318
Query: 518 HEYAEHGLAAHWLYKETGNKLQSISSMDE 546
HE AE G+ AHW YK + + SS +E
Sbjct: 319 HEEAELGVCAHWRYKGSDSTPGMASSYEE 347
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
Query: 130 CIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRL 189
C G + +LI + D ++AG+L+ V + + +EE FG VA L+ GV R+
Sbjct: 28 CFRAG-LDVVLILAELHVGTDCLLAGMLYRTVREKRIEIPEVEERFGAGVASLLRGVLRM 86
Query: 190 SYINQLLRRHRRINVNQGTLG--HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA 247
+ I L R +Q LG H + +++R ML+ +VDD RV LIKLA+R +R +
Sbjct: 87 AAIGDL-----RPQQDQPVLGQAHAQKDNVRKMLIALVDDVRVALIKLAERTCAIRAVKD 141
Query: 248 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
+ VA+E ++ LA RLG+ LK ELEDL F
Sbjct: 142 -DEDRREPVAREVFDVYAPLAHRLGIGHLKWELEDLSF 178
>gi|422809604|ref|ZP_16858015.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
gi|378753218|gb|EHY63803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|301064997|ref|ZP_07205342.1| GTP diphosphokinase [delta proteobacterium NaphS2]
gi|300440846|gb|EFK05266.1| GTP diphosphokinase [delta proteobacterium NaphS2]
Length = 716
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 21/224 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E ++KA ++ + H GQ R +G+PYL+H + IL L K V + AG
Sbjct: 15 HPKADIELIEKAYVYSAKVHQGQIRLSGEPYLSHPLEAAYILTQL-----KMDVVCIAAG 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D SL I FG+E A +V GV+++S I+ + R +A
Sbjct: 70 LLHDVVEDTHASLEEISGLFGEETANIVDGVTKISKIHFKSSKQR------------QAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
++R M+L M D RV+L+KLADRLHNMRT+ P K R++A ETL I+ LA R+G+
Sbjct: 118 NVRKMILAMSTDIRVILVKLADRLHNMRTLGFQPEKKQRSIATETLDIYAPLAGRMGIHW 177
Query: 276 LKAELEDLCFAVLQ--MRADLASMWSPR-NRVG-YSRRITTIVS 315
+K+ LEDLC L+ + A + S+ + R + +G + +R+ I++
Sbjct: 178 IKSNLEDLCLFYLEPKIYASIKSLTARRQSEMGDFMKRVQDILT 221
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K YSI+ KM +D+ + +V+D A RV+V +I+ CY L +H
Sbjct: 232 TIKGRQKHFYSIYKKMIAQDLEVGQVFDILAFRVIVS---------SIKECYEALGHIHS 282
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
+W P+ F DYI PK + YQSLHT V GP +EVQIRT +MH AE G+AAHW YK
Sbjct: 283 IWKPVSKRFKDYISVPKANMYQSLHTTVFGPMKERMEVQIRTWEMHHVAESGIAAHWKYK 342
Query: 533 E 533
E
Sbjct: 343 E 343
>gi|308047832|ref|YP_003911398.1| (p)ppGpp synthetase I SpoT/RelA [Ferrimonas balearica DSM 9799]
gi|307630022|gb|ADN74324.1| (p)ppGpp synthetase I, SpoT/RelA [Ferrimonas balearica DSM 9799]
Length = 701
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQ+ +A A+ AH GQ R +GDPY+TH + RILA + + +T++A +LHDV+
Sbjct: 21 EQLTQAYITARDAHDGQLRSSGDPYITHPVAVSRILAEM-----RLDHETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E FG +VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTELTQEDLAELFGAQVAELVEGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA+RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPLANRLGIHNIKNELE 183
Query: 282 DLCFAVL 288
DL F L
Sbjct: 184 DLGFRAL 190
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R K+L+SI++KM K++ +V D A R+ V + I CY +L
Sbjct: 228 GIPATVQGREKNLFSIYNKMVNKELQFQEVMDIYAFRITVAN---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 AMHTLYKPRPNRFKDYIAIPKANGYQSLHTSLFGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETG 535
WLYK G
Sbjct: 339 WLYKNKG 345
>gi|117621008|ref|YP_854564.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117562415|gb|ABK39363.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 705
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 18/245 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLRQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E FGD VA+LVAGVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTPVTKADLAELFGDAVAELVAGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
+L F A+ MR+ + R R I +I S R A + + ++++ S+
Sbjct: 184 ELGFEALYPMRSRVLRESVRRARGNRREIIDSIQSEIEGRLREAGIESQVSGREKNLFSI 243
Query: 341 KDLLE 345
+ +E
Sbjct: 244 YNKME 248
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIESQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVRVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|254482710|ref|ZP_05095948.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
gi|214037069|gb|EEB77738.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
Length = 706
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 21/209 (10%)
Query: 88 VDGVDVTGYPIFNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
+D + T + EQ V++A FA++AHHGQ R++G+PY+TH + ILA +
Sbjct: 7 IDALSNTLHTYLTSEQSNHVRRAYYFAEQAHHGQLRRSGEPYVTHPLAVAGILAEMHMDH 66
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+++A +LHDV++D +I E+FG VA+LV GVS+L+ +
Sbjct: 67 -----QSLIAAMLHDVIEDTGIPKSAIGEQFGAPVAELVDGVSKLT------------QM 109
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
G+L ++A + + M L M D RV+L+KLADRLHNMRT+ L +KAR +++ETL I+
Sbjct: 110 EFGSLEEKQAENFQKMALAMARDIRVILVKLADRLHNMRTLGVLQTSKARRISRETLEIY 169
Query: 265 CSLASRLGLWALKAELEDLCFAVLQ-MRA 292
+A RLG+ ++ E EDL F+ + MRA
Sbjct: 170 APIAMRLGMNNIRMEFEDLGFSAMHPMRA 198
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G + R K LYSI+ KM+ K ++ D A R++V ++ CY +L
Sbjct: 231 GHPAEVMGREKHLYSIYKKMKSKRKSFSEIMDIYAFRIIVD---------SVDTCYRVLG 281
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P+ GEF DYI PK +GYQSLHT + G G +E+QIRT++M + A +G+AAH
Sbjct: 282 CVHSLYKPVPGEFKDYIAIPKANGYQSLHTVLMGMHGVPIEIQIRTREMEDMANNGIAAH 341
Query: 529 WLYK 532
WLYK
Sbjct: 342 WLYK 345
>gi|46907751|ref|YP_014140.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224124|ref|YP_002758231.1| (p)ppGpp synthetase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824418|ref|ZP_05229419.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|254852146|ref|ZP_05241494.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|254931458|ref|ZP_05264817.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|300764810|ref|ZP_07074800.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|386732261|ref|YP_006205757.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404281082|ref|YP_006681980.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404286945|ref|YP_006693531.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749867|ref|YP_006673333.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|405752743|ref|YP_006676208.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|405755681|ref|YP_006679145.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|406704296|ref|YP_006754650.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|417316063|ref|ZP_12102721.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|424714398|ref|YP_007015113.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823285|ref|ZP_18248298.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|46881020|gb|AAT04317.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|225876586|emb|CAS05295.1| Putative (p)ppGpp synthetase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605450|gb|EEW18058.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|293583010|gb|EFF95042.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|293593653|gb|EFG01414.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|300514486|gb|EFK41543.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|328465560|gb|EGF36789.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|332311965|gb|EGJ25060.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|384391019|gb|AFH80089.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404219067|emb|CBY70431.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|404221943|emb|CBY73306.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|404224881|emb|CBY76243.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|404227717|emb|CBY49122.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404245874|emb|CBY04099.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361326|emb|CBY67599.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|424013582|emb|CCO64122.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|377567607|ref|ZP_09796815.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia terrae NBRC 100016]
gi|377535147|dbj|GAB41980.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia terrae NBRC 100016]
Length = 794
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 80 YPKADVALLQRAYDVADERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 134
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E++FG EVA LV GV++L + LG EA
Sbjct: 135 LLHDTVEDTGYSLQALEKDFGPEVAHLVDGVTKLDKV---------------ALGSAAEA 179
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 239
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 TVKWELEDLSFAILH 254
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + + CY+ + +
Sbjct: 292 INATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEED---------RDCYAAVGV 342
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ Y SLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 343 VHSLWQPMAGRFKDYIAQPRFGVYMSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 402
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE G + +S D ++I+
Sbjct: 403 RYKENGYR-KSGKKSDTAEID 422
>gi|300856534|ref|YP_003781518.1| GTP pyrophosphokinase [Clostridium ljungdahlii DSM 13528]
gi|300436649|gb|ADK16416.1| GTP pyrophosphokinase [Clostridium ljungdahlii DSM 13528]
Length = 725
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 19/183 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVD 162
V+KA FA AH Q R++G+PY++H + IL M + +S T+VAG+LHDV++
Sbjct: 21 VEKAYYFADEAHKKQKRESGEPYISHPVEVAYILVEMGLDTS------TIVAGLLHDVIE 74
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S I+ EF EVA LV GV++L + T ++A+++R MLL
Sbjct: 75 DTQFSYEDIKREFSVEVANLVEGVTKLG------------KIECKTKEEQQADNVRKMLL 122
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DD RV+LIKLADRLHNMRT+ +P K + A+ET I+ LA RLG+ +K ELED
Sbjct: 123 AMADDIRVILIKLADRLHNMRTLKYMPVKKQKEKAKETFDIYAPLAHRLGMSKIKWELED 182
Query: 283 LCF 285
L F
Sbjct: 183 LAF 185
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +K+ I +++D A+R++V ++ CY+ L
Sbjct: 226 GIDSDIEGRPKHFYSIYRKMVKKNKTIDQIFDLTAVRILVN---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ P+ G F DYI PKP+ YQSLH+ V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTIYKPMPGRFKDYIAMPKPNMYQSLHSTVIGPQGKPFEIQIRTFEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|320334134|ref|YP_004170845.1| (p)ppGpp synthetase I SpoT/RelA [Deinococcus maricopensis DSM
21211]
gi|319755423|gb|ADV67180.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus maricopensis DSM
21211]
Length = 748
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 17/203 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A FA+ AH G RK+G+PY+TH + ILA L + D + AG LHD V
Sbjct: 17 EKIERAYEFARDAHDGVLRKSGEPYITHPVAVALILAELGMDT-----DAICAGFLHDTV 71
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + IE+ FG +V ++V G +++S + + +L +++ +LR ML
Sbjct: 72 EDTDVTFQQIEDHFGRDVRRIVEGETKVSKLTK----------QTTSLQDQQSENLRQML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M DD R++++KLADRLHNMRT+ ++ P K + +++ET+ I+ LA RLG+ +K ELE
Sbjct: 122 IAMTDDIRIIVVKLADRLHNMRTLGSMRPDKQQRISRETIEIYAPLAHRLGIGQIKWELE 181
Query: 282 DLCFAVLQMR--ADLASMWSPRN 302
DL F L+ ADLA R
Sbjct: 182 DLSFKYLEPEAYADLARRLRTRQ 204
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 89/139 (64%), Gaps = 15/139 (10%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------------ 459
+ ++ R K LYSI +KMR++ + +++D A+RV++ K ++ P
Sbjct: 235 IDIAGRSKHLYSIHTKMRKEGKALEQIFDLLAIRVILTPK--PVNAPEGKQKDRAEEVRE 292
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
+ CY L IVH +W PI G F DYI PKP+GYQSLHT V +G +EVQIR+++MHE
Sbjct: 293 KRVCYHSLGIVHSMWTPIPGRFKDYIAVPKPNGYQSLHTTVISTEGQPIEVQIRSRRMHE 352
Query: 520 YAEHGLAAHWLYKETGNKL 538
AE+G+AAHW+YK+ G++L
Sbjct: 353 VAEYGVAAHWMYKQ-GDRL 370
>gi|217964330|ref|YP_002350008.1| GTP pyrophosphokinase [Listeria monocytogenes HCC23]
gi|290893882|ref|ZP_06556860.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|386008294|ref|YP_005926572.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|386026896|ref|YP_005947672.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404407961|ref|YP_006690676.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
gi|217333600|gb|ACK39394.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Listeria
monocytogenes HCC23]
gi|290556599|gb|EFD90135.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|307571104|emb|CAR84283.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|336023477|gb|AEH92614.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404242110|emb|CBY63510.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|16803563|ref|NP_465048.1| hypothetical protein lmo1523 [Listeria monocytogenes EGD-e]
gi|47097020|ref|ZP_00234593.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|254828243|ref|ZP_05232930.1| relA [Listeria monocytogenes FSL N3-165]
gi|254912197|ref|ZP_05262209.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|254936525|ref|ZP_05268222.1| relA [Listeria monocytogenes F6900]
gi|284801913|ref|YP_003413778.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284995055|ref|YP_003416823.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|386043834|ref|YP_005962639.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|386047175|ref|YP_005965507.1| relA [Listeria monocytogenes J0161]
gi|386050499|ref|YP_005968490.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|386053776|ref|YP_005971334.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404284015|ref|YP_006684912.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404410825|ref|YP_006696413.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|405758571|ref|YP_006687847.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|16410952|emb|CAC99601.1| relA [Listeria monocytogenes EGD-e]
gi|47014602|gb|EAL05562.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|258600631|gb|EEW13956.1| relA [Listeria monocytogenes FSL N3-165]
gi|258609119|gb|EEW21727.1| relA [Listeria monocytogenes F6900]
gi|284057475|gb|ADB68416.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284060522|gb|ADB71461.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|293590170|gb|EFF98504.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|345534166|gb|AEO03607.1| relA [Listeria monocytogenes J0161]
gi|345537068|gb|AEO06508.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|346424345|gb|AEO25870.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|346646427|gb|AEO39052.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404230651|emb|CBY52055.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|404233517|emb|CBY54920.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404236453|emb|CBY57855.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|441471216|emb|CCQ20971.1| GTP pyrophosphokinase [Listeria monocytogenes]
gi|441474345|emb|CCQ24099.1| GTP pyrophosphokinase [Listeria monocytogenes N53-1]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|383827879|ref|ZP_09982968.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora
xinjiangensis XJ-54]
gi|383460532|gb|EID52622.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora
xinjiangensis XJ-54]
Length = 782
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 79 LQRAYDVAEELHRDQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 133
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + +EFG++VA+LV GV++L V GT EA +R M++
Sbjct: 134 TGYSVEQLTDEFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 179
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 180 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 239
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 240 AFAILQ 245
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K YSI KM + + ++D +R++V + ++ CY+ + +
Sbjct: 283 LSAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVDE---------VRDCYAAMGV 333
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW
Sbjct: 334 VHALWQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHW 393
Query: 530 LYKET 534
YKET
Sbjct: 394 RYKET 398
>gi|333909014|ref|YP_004482600.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479020|gb|AEF55681.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 751
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 11/137 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L +VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLGVVHNL 311
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WRPIPQEFDDYISNPKSNGYQSLHTAVVGPQGRALEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 534 TGNKLQSISSMDESDIE 550
G L S S+ E ++
Sbjct: 371 -GTDLSSNSTSYEEKLQ 386
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D++VA L+ V + + + + FG +VA L+ GV R+ +++
Sbjct: 68 LEMVEILSGFRADQDSLVAAALYRAVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKN 127
Query: 196 LRRHRRINVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253
L + V LG E LR ML+ ++DD RVVLIKLA+R ++ +
Sbjct: 128 LTADTAVEV----LGSNENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQGEDRR 183
Query: 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 288
AVA E ++ LA RLG+ +K ELEDL F L
Sbjct: 184 VAVALEVQSVYAPLAHRLGIGHIKWELEDLSFRYL 218
>gi|357419457|ref|YP_004932449.1| (p)ppGpp synthetase I SpoT/RelA [Thermovirga lienii DSM 17291]
gi|355396923|gb|AER66352.1| (p)ppGpp synthetase I, SpoT/RelA [Thermovirga lienii DSM 17291]
Length = 775
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K YSI+ KMRRK++ + +++D ALRV+V D + CY++L
Sbjct: 280 GIKAHITGRAKHFYSIYEKMRRKNLSLEELFDLLALRVIVDD---------VATCYTVLG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W P+ G+FDDYI NPK + YQSLHTAV GP G LEVQIRT MH AE+G+A+H
Sbjct: 331 VVHTIWKPLPGQFDDYIANPKSNMYQSLHTAVIGPSGEPLEVQIRTWDMHWLAEYGVASH 390
Query: 529 WLYKETGNKLQSI 541
W YKE KL +
Sbjct: 391 WRYKEGKQKLDEL 403
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 21/199 (10%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA AH GQFR + +PY+ H I ILA + + V+T+ A +LHDV++D
Sbjct: 77 EAFVFAALAHDGQFRLSKEPYVVHPIRVAAILAEM-----ELDVNTLEAALLHDVLEDTS 131
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+ + +FG +V LV GV++L + + +A +LR M L M
Sbjct: 132 VTPEELSNKFGRDVLLLVDGVTKLG------------KITFKSFEDYQAENLRKMFLVMA 179
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVLIKLADRLHNM+TI L K +A+ETL I+ LA RLG++ +K ELED F
Sbjct: 180 KDVRVVLIKLADRLHNMKTIQYLRMDKQIRIAKETLEIYAPLAHRLGIYQIKRELEDAAF 239
Query: 286 AVLQMRADLASMWSPRNRV 304
+ AD + + R RV
Sbjct: 240 KI----ADPEAYYDIRRRV 254
>gi|293400748|ref|ZP_06644893.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305774|gb|EFE47018.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 27/194 (13%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G ILAML +G +A+ AG+LHD
Sbjct: 30 NIDLITRAYLCAEKNHAGQYRKSGEPYIIHAIQVGYILAML--RTGPKAI---AAGLLHD 84
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 214
VV+D L I E FG+EVA LV V+++ G L ++ A
Sbjct: 85 VVEDCDVCLEQISEMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 127
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++ R + + M D RV+LIKL+DRLHNMRT+ + P K + +A ETL ++ +A RLG+
Sbjct: 128 SNHRKIFIAMAKDVRVILIKLSDRLHNMRTLQYMTPQKQQKIASETLEVYAPIAHRLGIS 187
Query: 275 ALKAELEDLCFAVL 288
+K ELEDLCF L
Sbjct: 188 DIKNELEDLCFQYL 201
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 24/167 (14%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R++ CY +L +H + P
Sbjct: 247 RSKHLYSIYKKMITKNKRFEEILDLLAIRIITDTDTA---------CYEILGYIHAKYRP 297
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK + YQSLHT + DG+ EVQIRT+ M E AE G+AAHW YKE N
Sbjct: 298 IPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTESMDEVAEQGIAAHWRYKENLN 357
Query: 537 KLQSISSMDESDIEAS-------SSLSKDTDDH-----NPLDTDLFQ 571
+ + + +IE S +S D +D N L D+F+
Sbjct: 358 GGREVH---QKEIEEQLHWFKDFSVMSDDVNDDAMEYMNLLQKDIFE 401
>gi|343496407|ref|ZP_08734505.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
nigripulchritudo ATCC 27043]
gi|342821246|gb|EGU56034.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
nigripulchritudo ATCC 27043]
Length = 707
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E + ++ A+ AH GQ R TG+PY+ H + RILA + + +T++A +LHDV+
Sbjct: 21 EALSRSYVVARDAHEGQTRSTGEPYIIHPVAVARILAEMRLDN-----ETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEATKEDLEEQFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKVELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K+L+SI++KMR K+ H + D A RVVV + CY +L
Sbjct: 228 GLEARVFGREKNLFSIYNKMRTKEQRFHTIMDIYAFRVVVDSAD---------MCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G+ DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGKMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G+K
Sbjct: 339 WSYKSNGDK 347
>gi|375100160|ref|ZP_09746423.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora cyanea
NA-134]
gi|374660892|gb|EHR60770.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora cyanea
NA-134]
Length = 781
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 79 LQRAYDVAEELHRDQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 133
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + +EFG++VA+LV GV++L V GT EA +R M++
Sbjct: 134 TGYSVEQLTDEFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 179
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 180 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 239
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 240 AFAILQ 245
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V + ++ CY+ + +VH L
Sbjct: 287 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVDE---------VRDCYAAMGVVHAL 337
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DY+ P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 338 WQPMPGRFKDYVAQPRYGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 397
Query: 534 T 534
T
Sbjct: 398 T 398
>gi|47094426|ref|ZP_00232112.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
gi|47017201|gb|EAL08048.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
Length = 724
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 14 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 68
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 69 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 116
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 117 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 176
Query: 284 CFAVL 288
L
Sbjct: 177 ALRYL 181
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 219 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 269
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 270 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 329
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 330 WAYKE-GKVVNSKTSFD 345
>gi|186685647|ref|YP_001868843.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc punctiforme PCC 73102]
gi|186468099|gb|ACC83900.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc punctiforme PCC 73102]
Length = 757
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 109/189 (57%), Gaps = 17/189 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA + H GQ+RK+G+PY+ H I +L L S+ + AG LHDVV+D
Sbjct: 44 IGRAFEFAYQLHQGQYRKSGEPYIAHPIAVADLLHDLGGSAA-----MIAAGFLHDVVED 98
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ IEE FG EV +LV GV++LS +IN T +A + R M L
Sbjct: 99 TEVTSQEIEERFGAEVRQLVEGVTKLS----------KINFTSKT--ESQAENFRRMFLA 146
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ + A R AQET I+ LA+RLG+W +K ELEDL
Sbjct: 147 MAQDIRVIVVKLADRLHNMRTLQYMSEASRRRSAQETRDIFAPLANRLGIWRIKWELEDL 206
Query: 284 CFAVLQMRA 292
F L+ A
Sbjct: 207 AFKYLEPEA 215
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 82/135 (60%), Gaps = 11/135 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K LYSI+ KM R+ H++YD ALR++V + CY L +VH
Sbjct: 255 ISGRPKHLYSIYQKMHRQQKEFHEIYDLAALRIIVQSN---------EECYRALAVVHDA 305
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTIEMHHIAEYGIAAHWKYKE 365
Query: 534 TGNKLQSISSMDESD 548
TG SIS + +D
Sbjct: 366 TGGS--SISHLTGTD 378
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
++K LR +L W+ L+ S K N D V V P G+++ L G
Sbjct: 378 DDKFTWLRQLLEWQTDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGDVVPLSPG 428
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST D A + VG VNG++V +T L++GDIVEV
Sbjct: 429 STTVDFAYRIHTEVGNHCSGARVNGRMVSLSTRLQNGDIVEV 470
>gi|254994034|ref|ZP_05276224.1| (p)ppGpp synthetase [Listeria monocytogenes FSL J2-064]
Length = 711
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|407939728|ref|YP_006855369.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
gi|407897522|gb|AFU46731.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
Length = 737
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISATVAGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + PI EFDDYI PKP+GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDNGKPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE G K +S+ E D
Sbjct: 360 AYKEAGAKGYAGVSATGEYD 379
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 13/191 (6%)
Query: 102 EQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
EQV +A AFA+ G+ +G+ L H IL + S +A +V +H
Sbjct: 31 EQVNALARARAFAEPLMAGETLDSGENTLAHADAVAAILKGIGGSEAMQAASYLVHACIH 90
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
++ E I + FG A L ++L + Q R ++ + ++R
Sbjct: 91 --LNKPEEV---IAKAFGANFAALAVETTKLMRVQQQARAAAPLDDPA-----VQTENVR 140
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
MLL D RVV+++LA RL +R A + ++A+E+L ++ LA+RLG+W +K
Sbjct: 141 KMLLAFSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKW 200
Query: 279 ELEDLCFAVLQ 289
ELEDL F L+
Sbjct: 201 ELEDLSFRFLE 211
>gi|347819089|ref|ZP_08872523.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 737
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++ R K +YSI KMR K + +V+D RALRV+V P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PTVKDCYAALSW 299
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH PI EFDDYI PKP+GYQSLHT V+ DG +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQLQPIVEEFDDYIARPKPNGYQSLHTIVRDADGRPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 530 LYKETGNK-LQSISSMDESD 548
YKE GNK +S+ E D
Sbjct: 360 AYKEAGNKGYAGVSAAGEYD 379
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +G+ L H + A+L G A+ ++ AC
Sbjct: 38 RARAFAEPLIAGETLDSGENTLAHA---DAVAALLKEIGGSEAMQAAA------YLEHAC 88
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
L EE FG A L ++L + Q R + ++ + ++R ML
Sbjct: 89 MHLNKPEEVIAKTFGAHFATLAMESTKLMRVQQQARAAQHVDDPA-----VQTENVRKML 143
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D VVL+ LA RL +R A + ++A+E+L ++ LA+RLG+W LK ELE
Sbjct: 144 LAFSRDLSVVLLHLASRLQTLRYHAANKRPVSPSMARESLQVFAPLANRLGIWQLKWELE 203
Query: 282 DLCFAVLQ 289
DL L+
Sbjct: 204 DLALRFLE 211
>gi|291535022|emb|CBL08134.1| (p)ppGpp synthetase, RelA/SpoT family [Roseburia intestinalis
M50/1]
Length = 770
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 119/203 (58%), Gaps = 18/203 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A+ AH GQ RK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 54 IEKAYHVARDAHEGQARKSGEPYIIHPLCVAIILAEL-----ELDKETIVAGLLHDVVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I +EFGDEVA LV GV++L QL ++ V +A +LR M L
Sbjct: 109 TVMTDEQIAQEFGDEVALLVDGVTKLG---QLSYDADKVEV--------QAENLRKMFLA 157
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 158 MAKDIRVILIKLADRLHNMRTLKYMTPEKQKEKARETMDIYAPIAQRLGISKIKIELDDL 217
Query: 284 CFAVLQMRA--DLASMWSPRNRV 304
L+ A DL + R V
Sbjct: 218 SLKYLEPDAYYDLVHQIAQRKSV 240
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +SI+ KM + + ++YD A+R++V +++ CY+ L
Sbjct: 260 GIPAQVDGRAKHFFSIYKKMVNQHKTLDQIYDLFAIRIIVD---------SVKDCYAALG 310
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 311 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIRTFEMHRTAEYGIAAH 370
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 371 WKYKEASN 378
>gi|225548080|ref|ZP_03769365.1| hypothetical protein RUMHYD_00059 [Blautia hydrogenotrophica DSM
10507]
gi|225040756|gb|EEG51002.1| RelA/SpoT family protein [Blautia hydrogenotrophica DSM 10507]
Length = 769
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA AK AH GQFRK+G+PY+ H + ILA L + +T+VAG+LHD V+D
Sbjct: 55 IEKAYRIAKNAHEGQFRKSGEPYIIHPLCVAIILADL-----ELDKETIVAGLLHDAVED 109
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I++EFG EVA LV GV++L QL ++ + +A +LR M L
Sbjct: 110 TIMTTEEIQQEFGAEVALLVDGVTKLG---QLSYSADKVEL--------QAENLRKMFLA 158
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 159 MAKDIRVILIKLADRLHNMRTLQYMKPEKQQEKARETMDIYAPIAMRLGISKVKVELDDL 218
Query: 284 CFAVLQ 289
L+
Sbjct: 219 ALKYLK 224
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 18/171 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L
Sbjct: 261 GIKAQVDGRIKHFFSIYRKMVNQDKTIDQIYDLFAVRILVD---------TVKDCYAALG 311
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 312 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPKGQPFEIQIRTFEMHKTAEYGIAAH 371
Query: 529 WLYKETGNKLQSISSMDESDIEASSSL---SKDTDDHNPL------DTDLF 570
W YKE+ + + I +E + + KD D+ D DLF
Sbjct: 372 WKYKESSDGKKPIGIREEEKLNWLRQILEWQKDMSDNKEFLSLLKNDLDLF 422
>gi|82701185|ref|YP_410751.1| (p)ppGpp synthetase SpoT/RelA [Nitrosospira multiformis ATCC 25196]
gi|82409250|gb|ABB73359.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Nitrosospira multiformis ATCC 25196]
Length = 715
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 19/255 (7%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++Q A F++ AH GQFR++G+PY++H + IL L S T+ A +LHDV++
Sbjct: 34 ELQNAYLFSQSAHSGQFRQSGEPYISHPLAVASILGKLRLDS-----QTLAAALLHDVME 88
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S I + FG VA+LV GVS+L I + H +A + R MLL
Sbjct: 89 DTHVSKAEIGDRFGKSVAELVDGVSKLDKIE--FQSH----------ADAQAENFRKMLL 136
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNMRT+ A+ P K R +A+ET+ I+ +A+RLGL + EL+D
Sbjct: 137 AMARDVRVILIKLADRLHNMRTLEAMRPEKKRRIARETMEIYAPIANRLGLNNIYHELQD 196
Query: 283 LCFAVLQMRADLASMWSPRNRVGYSRR-ITTIVSSPPLDERTASDDESFTTFDEHVLSM- 340
L F L R + R G R +T I+ + +TA D T ++ + S+
Sbjct: 197 LSFRYLYPRRYRVLTNATRAARGNRREMVTKILETMKQRLKTAGLDAEVTGREKQLYSIY 256
Query: 341 KDLLEAVVPFDILSD 355
K ++E + F + D
Sbjct: 257 KKMVEKHLSFSEILD 271
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K LYSI+ KM K + ++ D RV+V D + CY L
Sbjct: 240 GLDAEVTGREKQLYSIYKKMVEKHLSFSEILDIYGFRVIVKD---------VASCYIALG 290
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ PI G+F DYI PK +GYQSLH+ + GP G+ +E+QIRT +MH AE G+A+H
Sbjct: 291 ALHSLYNPIPGKFKDYIAIPKANGYQSLHSTLWGPYGTPIEIQIRTPEMHRIAEAGVASH 350
Query: 529 WLYKETGNKLQSIS 542
WLYK + L ++
Sbjct: 351 WLYKSSDADLNDLN 364
>gi|398803829|ref|ZP_10562843.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
gi|398095693|gb|EJL86028.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
Length = 753
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 15/154 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
LE+EL + G+ + R K +YSI KMR K + +V+D RALRV+ D G
Sbjct: 244 LERELNQN-----GIAALVQGRPKHIYSIVKKMRGKSLDFEQVFDIRALRVIAADVKG-- 296
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
CY+ L VH + P+DGEFDDYI PK +GYQSLHT V+ G A+E+Q+RTQ
Sbjct: 297 -------CYAALGYVHSRFTPVDGEFDDYIAKPKSNGYQSLHTVVRDEAGRAVEIQVRTQ 349
Query: 516 KMHEYAEHGLAAHWLYKETGNK-LQSISSMDESD 548
MH++AEHG+AAHW YKE G K +S+ E D
Sbjct: 350 AMHDHAEHGVAAHWAYKEAGTKGYGGVSASSEYD 383
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H IL + S +A +V AC
Sbjct: 38 RARAFAEPLIASETHDTGENILAHADAVAAILKTIGGSEAMQAATYLVY---------AC 88
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN--DLRV 219
+ L +E FG A L ++L Q+ R+ R N L A ++R
Sbjct: 89 QHLTKPQEVITKAFGANYAALAMETTKLV---QVQRQARSANAKAQLLDDPAAQTENVRK 145
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL D RVV+++LA RL +R A +A E+L ++ LA+RLG+W +K E
Sbjct: 146 MLLAFSRDLRVVMLRLASRLQTLRHYAATRQTAPLPLAYESLHVFAPLANRLGIWQIKWE 205
Query: 280 LEDLCFAVLQ 289
+EDL F L+
Sbjct: 206 MEDLAFRFLE 215
>gi|315282436|ref|ZP_07870851.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
gi|313613919|gb|EFR87648.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
Length = 738
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|417746985|ref|ZP_12395466.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336461524|gb|EGO40392.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 788
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 73 YPKANVQLLQRAFEVADQRHASQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EEFG+EV LV GV++L + LG E
Sbjct: 128 LLHDTVEDTGYTLAQLSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 233 SVKWELEDLSFAILH 247
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 276 IINTLNASKIKATVEGRPKHYWSIYQKMIVKGRDFDNIHDLVGIRILCDE---------I 326
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 327 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 386
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 387 AEYGIAAHWRYKEAKGR 403
>gi|41407145|ref|NP_959981.1| RelA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|440776646|ref|ZP_20955484.1| RelA [Mycobacterium avium subsp. paratuberculosis S5]
gi|41395496|gb|AAS03364.1| RelA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|436723217|gb|ELP47070.1| RelA [Mycobacterium avium subsp. paratuberculosis S5]
Length = 788
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 73 YPKANVQLLQRAFEVADQRHASQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EEFG+EV LV GV++L + LG E
Sbjct: 128 LLHDTVEDTGYTLAQLSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 233 SVKWELEDLSFAILH 247
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 276 IINTLNASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 326
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 327 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 386
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 387 AEYGIAAHWRYKEAKGR 403
>gi|270291333|ref|ZP_06197555.1| GTP pyrophosphokinase [Pediococcus acidilactici 7_4]
gi|418069368|ref|ZP_12706646.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus acidilactici MA18/5M]
gi|270280179|gb|EFA26015.1| GTP pyrophosphokinase [Pediococcus acidilactici 7_4]
gi|357536837|gb|EHJ20865.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pediococcus acidilactici MA18/5M]
Length = 743
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV +G LHD V+D
Sbjct: 28 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVASGFLHDTVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG +EE FG +VA +V GVS++S I + NQ L A + R +LL
Sbjct: 83 TLITLGDVEELFGHDVAVIVDGVSKISKI--------KYKSNQEQL----AENHRKLLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+
Sbjct: 131 MSQDIRVIIVKLADRLHNMRTLRHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDI 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 ALRYLN 196
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V + R K +YSI+ KM + ++YD A+RV+ ++ CY++L +H
Sbjct: 237 VDIYGRPKHIYSIYRKMVDQHKQFSQIYDLLAVRVITD---------TVRDCYAVLGAIH 287
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
W PI G F DYI PK + YQSLHT V GP+G LE QIRT+ MH AE+G+AAHW Y
Sbjct: 288 AKWKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEFQIRTEAMHRVAEYGVAAHWAY 347
Query: 532 KE 533
KE
Sbjct: 348 KE 349
>gi|304385085|ref|ZP_07367431.1| GTP diphosphokinase [Pediococcus acidilactici DSM 20284]
gi|427439778|ref|ZP_18924342.1| GTP diphosphokinase [Pediococcus lolii NGRI 0510Q]
gi|304329279|gb|EFL96499.1| GTP diphosphokinase [Pediococcus acidilactici DSM 20284]
gi|425787910|dbj|GAC45130.1| GTP diphosphokinase [Pediococcus lolii NGRI 0510Q]
Length = 745
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q+R++G+PY+ H I ILA L K +TV +G LHD V+D
Sbjct: 30 VQKACDFASYVHKEQYRQSGEPYIMHPIQVAGILANL-----KMDPETVASGFLHDTVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG +EE FG +VA +V GVS++S I + NQ L A + R +LL
Sbjct: 85 TLITLGDVEELFGHDVAVIVDGVSKISKI--------KYKSNQEQL----AENHRKLLLA 132
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R ++ ETL I+ LA RLG+ +K ELED+
Sbjct: 133 MSQDIRVIIVKLADRLHNMRTLRHLRPDKQRRISNETLEIYAPLAERLGISTIKWELEDI 192
Query: 284 CFAVLQ 289
L
Sbjct: 193 ALRYLN 198
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V + R K +YSI+ KM + ++YD A+RV+ ++ CY++L +H
Sbjct: 239 VDIYGRPKHIYSIYRKMVDQHKQFSQIYDLLAVRVITD---------TVRDCYAVLGAIH 289
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
W PI G F DYI PK + YQSLHT V GP+G LE QIRT+ MH AE+G+AAHW Y
Sbjct: 290 AKWKPIPGRFKDYIAMPKANMYQSLHTTVVGPEGRPLEFQIRTEAMHRVAEYGVAAHWAY 349
Query: 532 KE 533
KE
Sbjct: 350 KE 351
>gi|254775911|ref|ZP_05217427.1| GTP pyrophosphokinase [Mycobacterium avium subsp. avium ATCC 25291]
Length = 788
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 73 YPKANVQLLQRAFEVADQRHASQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EEFG+EV LV GV++L + LG E
Sbjct: 128 LLHDTVEDTGYTLAQLSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 172
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 173 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 232
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 233 SVKWELEDLSFAILH 247
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+I+T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 276 IINTLNASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 326
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 327 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 386
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 387 AEYGIAAHWRYKEAKGR 403
>gi|326692698|ref|ZP_08229703.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Leuconostoc argentinum KCTC 3773]
Length = 745
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 111/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V+ A +A HH QFRK+G+PY+ H I ILA L K TV++G LHDVV
Sbjct: 26 EKVKLAYDWASELHHNQFRKSGEPYIIHPIQVAGILAEL-----KMDTATVISGYLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S+ IEE+FG +A+++ GV+++S I R + A + R +L
Sbjct: 81 EDTPASIQDIEEKFGATIAQIIDGVTKISKIEYKNSREQL------------AENHRKLL 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ AL K R +A ETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMSKDIRVIIVKLADRLHNMRTLGALREEKQRRIASETLDIYAPLADRLGISTIKWELE 188
Query: 282 DLCFAVL 288
DL + L
Sbjct: 189 DLALSYL 195
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 9/123 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V++ R K +YSI+ KM K ++YD A+RV+ I Y++L +H
Sbjct: 237 VSVYGRPKHIYSIYRKMTDKHKAFEEIYDLSAVRVLT---------DTIPDTYAVLGAIH 287
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
W+P+ G F DYI PK +GYQSLHT V GP G LEVQIRT MHE AE G+AAHW Y
Sbjct: 288 SKWMPLPGRFKDYIALPKANGYQSLHTTVIGPSGRPLEVQIRTHNMHEVAEFGVAAHWAY 347
Query: 532 KET 534
K+
Sbjct: 348 KKN 350
>gi|163856559|ref|YP_001630857.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Bordetella petrii DSM 12804]
gi|163260287|emb|CAP42589.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Bordetella petrii]
Length = 761
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A + K + + A +LHDV+
Sbjct: 70 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----AWKLDANALSAALLHDVI 124
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 125 EDQGIAKHELAEKFGTEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 172
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 173 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNVLFRELQ 232
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 233 DLCFAAM 239
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+ I++KM + +V D RV+V + CY L
Sbjct: 277 GIEAEVSGREKTLFGIYTKMTEQKKSFSEVLDIYGFRVIVH---------TLPECYLALG 327
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 328 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHIAEEGVASH 387
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 388 WLYKGADVSLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 433
>gi|94967206|ref|YP_589254.1| (p)ppGpp synthetase SpoT/RelA [Candidatus Koribacter versatilis
Ellin345]
gi|94549256|gb|ABF39180.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Candidatus Koribacter versatilis Ellin345]
Length = 740
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA F+++ H GQ R +G+PYL H + G ILA + + + AG+LHD V
Sbjct: 35 EIVKKAFEFSQKHHAGQTRASGEPYLVHPLEVGIILADM-----RLDTTAIAAGLLHDSV 89
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D ++ I+E+FG++VA +V GV+++S I+ R +A ++R M+
Sbjct: 90 EDTSVTIEEIQEQFGEQVAHIVEGVTKISRIDFASREE------------AQAENVRKMV 137
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MVDD RVVLIKLADRLHNMRT+ L + +A+ETL I+ +A RLG+ ++ ELE
Sbjct: 138 LAMVDDIRVVLIKLADRLHNMRTLQHLSQERQEKIARETLEIYAPIAHRLGMGRVRGELE 197
Query: 282 DLCF 285
DL F
Sbjct: 198 DLAF 201
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 16/157 (10%)
Query: 393 EEALEKELLISTSYIP--GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
EE LE+ + T+ + ++ + SR+K LYSI K+ R+ + + +VYD ALR++
Sbjct: 224 EEFLEQVKGVITAKLKENSIDARVDSRIKRLYSINQKLIRQRIDVEQVYDMYALRIIT-- 281
Query: 451 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 510
++ CYS+L I+H LW P+ G D+I P+P+ YQSLHT V +G+ EV
Sbjct: 282 -------KSVVDCYSILGIIHNLWRPVPGRIKDFIAMPRPNFYQSLHTTVIAENGNPFEV 334
Query: 511 QIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDES 547
QIRT++MH+ AE G+AAHW YK+ IS+ DE
Sbjct: 335 QIRTEEMHKLAEEGIAAHWKYKDG-----PISAKDEQ 366
>gi|300787167|ref|YP_003767458.1| GTP pyrophosphokinase [Amycolatopsis mediterranei U32]
gi|384150512|ref|YP_005533328.1| GTP pyrophosphokinase [Amycolatopsis mediterranei S699]
gi|399539049|ref|YP_006551712.1| GTP pyrophosphokinase [Amycolatopsis mediterranei S699]
gi|299796681|gb|ADJ47056.1| GTP pyrophosphokinase [Amycolatopsis mediterranei U32]
gi|340528666|gb|AEK43871.1| GTP pyrophosphokinase [Amycolatopsis mediterranei S699]
gi|398319819|gb|AFO78766.1| GTP pyrophosphokinase [Amycolatopsis mediterranei S699]
Length = 784
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 82 LQRAYDVAEELHRNQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 136
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDLRVMLL 222
++ S++ +FGD+VA+LV GV++L + LG EA +R M++
Sbjct: 137 TGYAVESLKADFGDKVAELVDGVTKLDKVQ---------------LGSSAEAETIRKMVI 181
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELED
Sbjct: 182 AMAKDPRVLVIKLADRLHNMRTMRFLPPEKQARKARETLEVLAPLAHRLGMATVKWELED 241
Query: 283 LCFAVLQ 289
L FA+LQ
Sbjct: 242 LAFAILQ 248
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V D ++ CY+ + +VH L
Sbjct: 290 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VRDCYAAMGVVHAL 340
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 341 WQPVPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHRTAEYGIAAHWRYKE 400
Query: 534 T-GNKLQSISSMDE 546
T G + +DE
Sbjct: 401 TKGTHTGNAVDVDE 414
>gi|403668327|ref|ZP_10933602.1| GTP pyrophosphokinase [Kurthia sp. JC8E]
Length = 730
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 111/193 (57%), Gaps = 20/193 (10%)
Query: 99 FNDEQV---QKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V Q+A A+ AH QFR +G+PY+ H I ILA L + +TV AG
Sbjct: 20 MNDEHVAFVQRAYELARDAHKEQFRSSGEPYIVHPIQVAGILAEL-----QMDPETVSAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D + + E+FG+EVA LV GV++L I ++ ++A
Sbjct: 75 FLHDVVEDTSVTREDLVEQFGEEVAMLVDGVTKLGKIKYKSKKE------------QQAE 122
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R M + M D RV+LIKLADRLHNMRT+ LP K R +++ETL I+ LA RLG+ A
Sbjct: 123 NHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRISKETLEIFAPLAHRLGISA 182
Query: 276 LKAELEDLCFAVL 288
+K ELED L
Sbjct: 183 IKWELEDTALRYL 195
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R K +YSI++KM+ + +++YD A+RV+V +I+ CY++L IVH L
Sbjct: 238 LSGRPKHIYSIYNKMQSQHKQFNEIYDLLAVRVIVD---------SIKDCYAVLGIVHTL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNLYQSLHTTVIGPYGDPLEVQIRTKSMHNIAEFGVAAHWAYKE 348
Query: 534 TGNKLQSISSMD 545
+ + + +D
Sbjct: 349 GKSAVTENTDID 360
>gi|324999169|ref|ZP_08120281.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudonocardia sp. P1]
Length = 777
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 110/186 (59%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H GQ RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 71 LQRAYDVAESKHEGQTRKSGDPYITHPLAVSTILAELGMDT-----TTLVAALLHDTVED 125
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL + +FGDEVA LV GV++L V GT EA +R M++
Sbjct: 126 TDYSLERLRTDFGDEVAHLVDGVTKLD------------KVEFGTAA--EAETIRKMVVA 171
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKL+DRLHNMRT+ L P K A ETL ++ LA RLG+ +K ELEDL
Sbjct: 172 MARDPRVLVIKLSDRLHNMRTMRFLRPEKQVKKANETLEVFAPLAHRLGMATVKLELEDL 231
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 232 SFAILQ 237
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM K ++D +RV+V + ++ CY+ + +VH L
Sbjct: 279 VEGRPKHYYSIYRKMIVKGRDFDDIHDLVGVRVLVEE---------VRDCYAAIGMVHAL 329
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT MH AE+G+AAHW YKE
Sbjct: 330 WQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTHAMHRTAEYGIAAHWRYKE 389
>gi|289548947|ref|YP_003473935.1| (p)ppGpp synthetase I SpoT/RelA [Thermocrinis albus DSM 14484]
gi|289182564|gb|ADC89808.1| (p)ppGpp synthetase I, SpoT/RelA [Thermocrinis albus DSM 14484]
Length = 698
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V + + + + H GQ R +G+PY+ H + ILA L DTVVAG+LHD++
Sbjct: 22 EYVSQVVEYIQEKHAGQKRASGEPYVIHPLQVAIILAKLGLDR-----DTVVAGLLHDIL 76
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + ++E FG VA +V GV++L V + E+A + R +L
Sbjct: 77 EDTSTTYQELKERFGKRVADIVEGVTKLG------------KVQFKDVKTEKAENYRKLL 124
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+L+KLADRLHNM+T+ LP K +A+ET+ I+ +A+RLG+W++K ELE
Sbjct: 125 LAMAKDIRVILVKLADRLHNMKTLGHLPREKQIRIAKETMEIYVPIANRLGIWSIKTELE 184
Query: 282 DLCFAVL 288
DLCF L
Sbjct: 185 DLCFMFL 191
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K LY I+ K RK + + V+D +RV+V + CY +L
Sbjct: 230 GLQAEITYRPKHLYGIWQKTIRKGIRLEDVHDILGVRVIVN---------TVPECYLVLG 280
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H ++ P+ G+FDDYI PKP+ YQSLHT V GP G +EVQIRT +MHE AE G+AAH
Sbjct: 281 ILHNIFKPVPGKFDDYISLPKPNLYQSLHTTVIGPKGKMVEVQIRTWEMHERAEKGVAAH 340
Query: 529 WLYKETGNKL-QSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W YKE QS+ + +S +E+ + +D + +LF
Sbjct: 341 WAYKEGKTPHDQSVYAWLKSLVESIQGSTNPSDLLENIRLELF 383
>gi|317153777|ref|YP_004121825.1| RelA/SpoT family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944028|gb|ADU63079.1| RelA/SpoT family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 726
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ +AH G R++G+PY++H ++ +LA + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSAQAHDGVVRRSGEPYISHPMNVAYLLAEMQLDEA-----TVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ IEE FG +VA +V GV+++S ++ + ++A ++R ++L
Sbjct: 78 TQASVDEIEEFFGSDVADIVDGVTKIS------------QMDFESKAVQQAENIRKLILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHNMRT+ + P K R +AQET I+ LA+RLGL +K ELEDL
Sbjct: 126 MAEDIRVLMVKLADRLHNMRTLEFMKPVKQRLIAQETQDIYAPLANRLGLHRVKTELEDL 185
Query: 284 CFAVLQ 289
C L+
Sbjct: 186 CLRYLK 191
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 9/144 (6%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K L+SI KM ++ + ++YD A R+++ +++ CY++L ++H +W P
Sbjct: 236 RTKHLHSIHVKMEQQGLTFDEIYDLIAFRIIL---------ESVKDCYAVLGLIHSIWRP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI PK + YQSLH+ V GPDG +EVQIRT++M+ AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISIPKANMYQSLHSTVIGPDGERIEVQIRTEEMNRIAEYGVAAHWQYKEVGK 346
Query: 537 KLQSISSMDESDIEASSSLSKDTD 560
+ S D D E + L + D
Sbjct: 347 GSKRARSADTRDAERYTWLRQIMD 370
>gi|67921546|ref|ZP_00515064.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
gi|67856658|gb|EAM51899.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
Length = 744
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 111/184 (60%), Gaps = 17/184 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYQLHEGQTRKSGEPYIAHPVAVAGILREL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IE+ FG EVA LV GV++LS + N + T ++A + R M L M
Sbjct: 96 VTVEDIEQRFGQEVALLVEGVTKLS----------KFNFSNKT--EQQAENFRRMFLAMA 143
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KL+DRLHNMRT+ L P K R +A ET I+ LA+RLG+W +K ELEDL F
Sbjct: 144 KDIRVIVVKLSDRLHNMRTLEPLRPDKQRRIALETKEIFAPLANRLGIWRVKWELEDLSF 203
Query: 286 AVLQ 289
L+
Sbjct: 204 KYLE 207
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 398 KELLISTSYIPGMEVT-LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
K+LL G++V L R K LY I+ KM+R++ G H++YD ALR++V
Sbjct: 233 KKLLSKRLDTMGIQVEELQGRPKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN----- 287
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
+ CY L +VH L+ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +
Sbjct: 288 ----EECYRSLAVVHDLFKPMPGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLE 343
Query: 517 MHEYAEHGLAAHWLYKETG 535
MH AE+G+AAHW YKETG
Sbjct: 344 MHHIAEYGIAAHWKYKETG 362
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+ L+ + + D++ +V + PNG+++ L G
Sbjct: 373 DEKFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARG 423
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+TA D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 424 ATAVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|434392415|ref|YP_007127362.1| (p)ppGpp synthetase I, SpoT/RelA [Gloeocapsa sp. PCC 7428]
gi|428264256|gb|AFZ30202.1| (p)ppGpp synthetase I, SpoT/RelA [Gloeocapsa sp. PCC 7428]
Length = 761
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 118/214 (55%), Gaps = 24/214 (11%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A +FA H GQ+RK+G+PY+ H + +L L SS + AG LHDVV+D
Sbjct: 48 RAFSFAYDLHQGQYRKSGEPYICHPVAVAGLLRDLGGSSA-----MIAAGFLHDVVEDTD 102
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
S+ IE+ FG+EV +LV GV++LS +Q + +A + R M L M
Sbjct: 103 VSIEDIEQRFGNEVRQLVEGVTKLSEFSQKF----------SSKTERQAENFRRMFLAMA 152
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K R +A ET I+ LA+RLG+ K ELEDL F
Sbjct: 153 KDIRVIVVKLADRLHNMRTLEHLAPEKQRRIALETREIFAPLANRLGIGRFKWELEDLAF 212
Query: 286 AVLQMRA-----DLASMWSPRNRVGYSRRITTIV 314
L+ A DL + RV R+T ++
Sbjct: 213 KYLEPEAYRQIQDLVA----EKRVNREARLTRVI 242
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ +S R K LY I+ KM+R+ H++YD A+R++V K + CY L VH
Sbjct: 257 IDISGRPKHLYGIYQKMQRQQKEFHEIYDIAAIRIIVNTK---------EECYRALAEVH 307
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PKP+ YQSLHTAV G G LEVQIRT +MH AE+G+AAHW Y
Sbjct: 308 DAFKPIPGRFKDYIGLPKPNRYQSLHTAVVGFTGRPLEVQIRTLEMHHVAEYGIAAHWKY 367
Query: 532 KETGNKLQS 540
KETG+ S
Sbjct: 368 KETGSSSHS 376
>gi|126728510|ref|ZP_01744326.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sagittula stellata E-37]
gi|126711475|gb|EBA10525.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sagittula stellata E-37]
Length = 712
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 31/219 (14%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVA 154
P N++ + A + ++ H GQFRK+G+PY TH + IL ++ +D T++
Sbjct: 16 PKTNEKLITAAYEYGRQMHDGQFRKSGEPYFTHPVAVAAILT-------EQQLDDATIIT 68
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
+LHD ++D + +E+ FG EVA+LV GV++L+ N+ + ++A
Sbjct: 69 ALLHDTIEDTRSTYTEVEQNFGHEVAELVDGVTKLT------------NLQLSSSETKQA 116
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+ R + + M D RV+L+KLADRLHNMRTI A+ P K + A+ET+ I+ LA R+G+
Sbjct: 117 ENFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMKPEKQQQKARETMDIFAPLAGRMGMQ 176
Query: 275 ALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
+++ ELEDL F VL +P+ R RR T+
Sbjct: 177 SMREELEDLAFRVL----------NPQGRESIIRRFITL 205
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 14/170 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ K +G ++ D R++ + CY+ L
Sbjct: 228 GVDAEVFGRAKKPYSIWRKMQEKKIGFSRLSDIYGFRIITQSEAD---------CYATLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MHE AE G+AAH
Sbjct: 279 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTREMHEVAETGVAAH 338
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 578
W Y++ G ++ ++D + AS + D+++ D D F + L+M
Sbjct: 339 WSYRD-GAPAENRFAVDPAKWIASVTEQFDSEE----DHDAFMEAVKLEM 383
>gi|354616924|ref|ZP_09034463.1| (p)ppGpp synthetase I, SpoT/RelA [Saccharomonospora paurometabolica
YIM 90007]
gi|353218722|gb|EHB83422.1| (p)ppGpp synthetase I, SpoT/RelA [Saccharomonospora paurometabolica
YIM 90007]
Length = 778
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 75 LQRAYDVAEERHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 129
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL + E+FG++V++LV GV++L V GT EA +R M++
Sbjct: 130 TGYSLEQLGEDFGEKVSQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 175
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 176 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 235
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 236 AFAILQ 241
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K YSI KM ++ + ++D +R++V D ++ CY+ + +
Sbjct: 279 VDAKVEGRPKHYYSIHQKMIVRERELDDIHDLVGVRILVED---------VRDCYAAMGV 329
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DY+ P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW
Sbjct: 330 VHALWQPMPGRFKDYVAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHRTAEYGIAAHW 389
Query: 530 LYKET 534
YKET
Sbjct: 390 RYKET 394
>gi|436839902|ref|YP_007324280.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432168808|emb|CCO22174.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 737
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ RAH GQ R +G+PYL H +H ++LA + + TV AG+LHD V+D
Sbjct: 39 IQRAYVFSARAHEGQMRLSGEPYLAHPLHVAKLLADM-----RLDEPTVAAGLLHDTVED 93
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I E FG+EVA +V GV+++S ++ + +A ++R M+L
Sbjct: 94 TDTTIDEIVELFGEEVADIVDGVTKISMMDF------------ESKAIAKAENIRKMILA 141
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHNMRT+ K + +AQETL I+ LA+RLGL+ +K +LEDL
Sbjct: 142 MAEDIRVLMVKLADRLHNMRTLDFQKSYKQQLIAQETLDIYSPLANRLGLYMVKRDLEDL 201
Query: 284 CFAVLQ 289
C L+
Sbjct: 202 CLYYLK 207
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T+ R K +SI KM+R+ + + +V+D A RV+V +++ CYS+L +
Sbjct: 245 IEGTIYGRTKHKFSIHKKMQRQGLNLDEVHDIIAFRVIVD---------SVKDCYSVLGL 295
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W PI G F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW
Sbjct: 296 VHSMWKPISGRFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGIAAHW 355
Query: 530 LYKETGNKL 538
YKETG +
Sbjct: 356 QYKETGTSV 364
>gi|317508687|ref|ZP_07966342.1| RelA/SpoT family protein [Segniliparus rugosus ATCC BAA-974]
gi|316253008|gb|EFV12423.1| RelA/SpoT family protein [Segniliparus rugosus ATCC BAA-974]
Length = 797
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 115/196 (58%), Gaps = 23/196 (11%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV--V 153
YP + + KA A+ H GQFR++GDPY+TH + ILA L +DT+ V
Sbjct: 85 YPKASLGLLAKAYEIAEVRHKGQFRRSGDPYITHPLAVAHILAEL-------GMDTLSLV 137
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHD V+D SL +E +FG +VA +V GV++L ++ G E
Sbjct: 138 AALLHDTVEDTGYSLEELERDFGSDVAHIVDGVTKLD----------KVTWGAGA----E 183
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A +R M++ M DPRV++IK+ADRLHNMRT+ +PP K AQETL + LA RLG+
Sbjct: 184 AETIRKMVIAMARDPRVLVIKVADRLHNMRTMRFMPPEKQVRKAQETLEVIAPLAHRLGM 243
Query: 274 WALKAELEDLCFAVLQ 289
++K ELEDL FAVL
Sbjct: 244 ASVKWELEDLAFAVLH 259
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R K +SI+ KM K ++D LRVV G+ ++ CY+ + +
Sbjct: 297 VDAKVAGRPKHYWSIYQKMIVKGRDFDDIHDLVGLRVVCGE---------VRDCYAAVGV 347
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQ+RT++MH AE G+AAHW
Sbjct: 348 VHSLWQPLPGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQLRTKEMHRVAEFGIAAHW 407
Query: 530 LYKETGNKLQSISS 543
YKE K+ S S+
Sbjct: 408 RYKENKGKVGSDSA 421
>gi|416384945|ref|ZP_11684705.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
gi|357264961|gb|EHJ13781.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
Length = 744
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 111/184 (60%), Gaps = 17/184 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + H GQ RK+G+PY+ H + IL L G +A+ + AG LHDVV+D
Sbjct: 41 RAFNFAYQLHEGQTRKSGEPYIAHPVAVAGILREL---GGDKAM--IAAGFLHDVVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IE+ FG EVA LV GV++LS + N + T ++A + R M L M
Sbjct: 96 VTVEDIEQRFGQEVALLVEGVTKLS----------KFNFSNKT--EQQAENFRRMFLAMA 143
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KL+DRLHNMRT+ L P K R +A ET I+ LA+RLG+W +K ELEDL F
Sbjct: 144 KDIRVIVVKLSDRLHNMRTLEPLRPDKQRRIALETKEIFAPLANRLGIWRVKWELEDLSF 203
Query: 286 AVLQ 289
L+
Sbjct: 204 KYLE 207
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 398 KELLISTSYIPGMEVT-LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 456
K+LL G++V L R K LY I+ KM+R++ G H++YD ALR++V
Sbjct: 233 KKLLSKRLDTMGIQVEELQGRPKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN----- 287
Query: 457 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 516
+ CY L +VH L+ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +
Sbjct: 288 ----EECYRSLAVVHDLFKPMPGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLE 343
Query: 517 MHEYAEHGLAAHWLYKETG 535
MH AE+G+AAHW YKETG
Sbjct: 344 MHHIAEYGIAAHWKYKETG 362
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+ L+ + + D++ +V + PNG+++ L G
Sbjct: 373 DEKFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARG 423
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+TA D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 424 ATAVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|403070228|ref|ZP_10911560.1| GTP pyrophosphokinase [Oceanobacillus sp. Ndiop]
Length = 733
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 87 IVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
I D ++ + ND E +Q A FA AHH QFRK+G+PY+ H + ILA L
Sbjct: 9 ITDIINKASIYLSNDDVELIQHAYDFASEAHHDQFRKSGEPYIIHPVQVAGILANL---- 64
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+ +T+ G LHDVV+D +L +E+EF E+A LV GV++L I R
Sbjct: 65 -EMDAETIAGGFLHDVVEDTDVTLEKMEQEFNHEIAMLVDGVTKLGKI--------RYET 115
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
+ ++A + R M + M D RV+LIKLADRLHNMRT+ L K R ++ ETL I+
Sbjct: 116 KEA----QQAENHRKMFVAMAKDIRVILIKLADRLHNMRTLKHLSSEKQRRISNETLEIF 171
Query: 265 CSLASRLGLWALKAELEDLCFAVL 288
LA RLG+ +K ELED L
Sbjct: 172 APLAHRLGISTIKWELEDTALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
+E +S R K LYSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEAEMSGRPKHLYSIYQKMVLQNKQFNEIYDLLAVRIIVD---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTNWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|291539586|emb|CBL12697.1| (p)ppGpp synthetase, RelA/SpoT family [Roseburia intestinalis
XB6B4]
Length = 770
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 119/203 (58%), Gaps = 18/203 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A+ AH GQ RK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 54 IEKAYHVARDAHEGQARKSGEPYIIHPLCVAIILAEL-----ELDKETIVAGLLHDVVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I +EFGDEVA LV GV++L QL ++ V +A +LR M L
Sbjct: 109 TVMTDEQIAQEFGDEVALLVDGVTKLG---QLSYDADKVEV--------QAENLRKMFLA 157
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 158 MAKDIRVILIKLADRLHNMRTLKYMTPEKQKEKARETMDIYAPIAQRLGISKIKIELDDL 217
Query: 284 CFAVLQMRA--DLASMWSPRNRV 304
L+ A DL + R V
Sbjct: 218 SLKYLEPDAYYDLVHQIAQRKSV 240
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +SI+ KM + + ++YD A+R++V +++ CY+ L
Sbjct: 260 GIPAQVDGRAKHFFSIYKKMVNQHKTLDQIYDLFAIRIIVD---------SVKDCYAALG 310
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 311 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIRTFEMHRTAEYGIAAH 370
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 371 WKYKEASN 378
>gi|240143890|ref|ZP_04742491.1| GTP diphosphokinase [Roseburia intestinalis L1-82]
gi|257204082|gb|EEV02367.1| GTP diphosphokinase [Roseburia intestinalis L1-82]
Length = 774
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 119/203 (58%), Gaps = 18/203 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A+ AH GQ RK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 58 IEKAYHVARDAHEGQARKSGEPYIIHPLCVAIILAEL-----ELDKETIVAGLLHDVVED 112
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I +EFGDEVA LV GV++L QL ++ V +A +LR M L
Sbjct: 113 TVMTDEQIAQEFGDEVALLVDGVTKLG---QLSYDADKVEV--------QAENLRKMFLA 161
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 162 MAKDIRVILIKLADRLHNMRTLKYMTPEKQKEKARETMDIYAPIAQRLGISKIKIELDDL 221
Query: 284 CFAVLQMRA--DLASMWSPRNRV 304
L+ A DL + R V
Sbjct: 222 SLKYLEPDAYYDLVHQIAQRKSV 244
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +SI+ KM + + ++YD A+R++V +++ CY+ L
Sbjct: 264 GIPAQVDGRAKHFFSIYKKMVNQHKTLDQIYDLFAIRIIVD---------SVKDCYAALG 314
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 315 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIRTFEMHRTAEYGIAAH 374
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 375 WKYKEASN 382
>gi|254785342|ref|YP_003072771.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
gi|237686776|gb|ACR14040.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
Length = 747
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 94/138 (68%), Gaps = 10/138 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI+ KMRRK++G +VYD RA+R++V + + CY++L
Sbjct: 259 GVEAHIYGRAKHIYSIWRKMRRKNIGFSEVYDIRAVRILVNSE---------RECYTVLG 309
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+ LEVQIRT+ MH+ AE+G+ AH
Sbjct: 310 IVHALWRNIPREFDDYIANPKENGYRSLHTAVNGPNNQVLEVQIRTRTMHDEAEYGVCAH 369
Query: 529 WLYKETGNKLQSISSMDE 546
W YK+T +K S S ++
Sbjct: 370 WRYKDT-DKDNSTGSYEQ 386
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DT+VA +L+ V + + +EE+FG V L+ GV +++ I+ L + N+
Sbjct: 85 DTLVAAVLYRSVRERKLAADVVEEKFGKTVVGLIQGVQKMAAISGLSN-----HSNEHVF 139
Query: 210 GHEEAN---DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
G E A ++R ML+ MVDD RV LIKL++R +R + P + + VA+E ++
Sbjct: 140 GQESAEQSENVRKMLVAMVDDVRVALIKLSERTCAIRAVKGAPVERRQKVAKEVSEVYAP 199
Query: 267 LASRLGLWALKAELEDLCFAVLQ 289
LA RLG+ +K ELEDL F L
Sbjct: 200 LAHRLGIGHIKWELEDLSFRYLH 222
>gi|269959393|ref|ZP_06173776.1| Guanosine-3'',5''-bis(diphosphate) 3''-pyrophosphohydrolase [Vibrio
harveyi 1DA3]
gi|388602595|ref|ZP_10160991.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio campbellii
DS40M4]
gi|424034420|ref|ZP_17773825.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-01]
gi|424042993|ref|ZP_17780647.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-02]
gi|424048266|ref|ZP_17785820.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-03]
gi|444424833|ref|ZP_21220285.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|269835830|gb|EEZ89906.1| Guanosine-3'',5''-bis(diphosphate) 3''-pyrophosphohydrolase [Vibrio
harveyi 1DA3]
gi|408873023|gb|EKM12230.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-01]
gi|408882447|gb|EKM21268.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-02]
gi|408882901|gb|EKM21696.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
cholerae HENC-03]
gi|444241956|gb|ELU53474.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|373114476|ref|ZP_09528689.1| hypothetical protein HMPREF9466_02722 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|371652470|gb|EHO17886.1| hypothetical protein HMPREF9466_02722 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
Length = 242
Score = 141 bits (355), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++++ A FA+ +H GQ+RK+G+ Y+ H I +IL L K DT++A ILHD+V
Sbjct: 21 DKIKLAYYFAEESHRGQYRKSGEAYIMHPIEVAKILVEL-----KSDTDTIIAAILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L IE FG VA LV GV++L ++ GT E ++R M+
Sbjct: 76 EDTFITLADIEYNFGKNVAHLVDGVTKLK------------SLPNGTKNQSE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + V+LIKLADRLHNMRT+ + P K +AQETL ++ LA RLG+ +K ELE
Sbjct: 122 LAMTQNLHVILIKLADRLHNMRTLKFMKPEKQIVIAQETLEVYAPLAHRLGIARIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L
Sbjct: 182 DLCLYYLH 189
>gi|94310104|ref|YP_583314.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
gi|93353956|gb|ABF08045.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
Length = 742
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 529 WLYKETGNK 537
W YKE G K
Sbjct: 353 WRYKEAGGK 361
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 104 VQKAIAFAKRAHHGQ---FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHD 159
V++A+A+ + G+ TG+ L+H RIL G R D A L
Sbjct: 20 VERALAYVREKADGEKPTTLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFP 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN--QGTLGHEEANDL 217
+V IEE FG++VA+LV GV +L I + + + + Q E+ L
Sbjct: 74 MVAFVPGVEAHIEERFGEDVARLVKGVRQLLRIGAIATQAEAVETSKSQAAARQEQVEAL 133
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVVL++LA RL +R + VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 278 AELEDLCFAVLQ 289
ELEDL F Q
Sbjct: 194 WELEDLAFRFEQ 205
>gi|156972949|ref|YP_001443856.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio harveyi
ATCC BAA-1116]
gi|156524543|gb|ABU69629.1| hypothetical protein VIBHAR_00627 [Vibrio harveyi ATCC BAA-1116]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|404214823|ref|YP_006669018.1| GDP pyrophosphokinase / GTP pyrophosphokinase/
guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
[Gordonia sp. KTR9]
gi|403645622|gb|AFR48862.1| GDP pyrophosphokinase / GTP pyrophosphokinase/
guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
[Gordonia sp. KTR9]
Length = 793
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQ RK+GDPY+TH + ILA L + T++A
Sbjct: 79 YPKADVALLQRAYDVADERHSGQKRKSGDPYITHPLAVATILADLGMDT-----TTLIAA 133
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++E +FG EVA LV GV++L + LG EA
Sbjct: 134 LLHDTVEDTGYSLQALEADFGPEVAHLVDGVTKLDKV---------------ALGSAAEA 178
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 179 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 238
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 239 TVKWELEDLSFAILH 253
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + CY+ + +
Sbjct: 291 INATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCEEDRD---------CYAAVGV 341
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ Y SLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 342 VHSLWQPMAGRFKDYIAQPRFGVYMSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 401
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE G + +S D ++I+
Sbjct: 402 RYKENGYR-KSGKKSDTAEID 421
>gi|354565208|ref|ZP_08984383.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
gi|353549167|gb|EHC18609.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
Length = 758
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 17/194 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ + +A FA + H GQ+RK+G+PY+ H I + ML G A+ + AG LH
Sbjct: 40 YDTSLICRAFEFAYQLHQGQYRKSGEPYICHPIA---VAGMLRDLGGSAAM--IAAGFLH 94
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D ++ IE+ FG EV LV GV++LS +IN T +A + R
Sbjct: 95 DVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLS----------KINFKSKT--ESQAENFR 142
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M L M D RV+++KLADRLHNMRT+ +P K R A ET I+ LA+RLG+W K
Sbjct: 143 RMFLAMAQDIRVIVVKLADRLHNMRTLEYMPEEKRRRTATETREIFAPLANRLGIWRFKW 202
Query: 279 ELEDLCFAVLQMRA 292
ELEDL F L+ A
Sbjct: 203 ELEDLAFKYLEPEA 216
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 256 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 306
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 307 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 366
Query: 534 TGNKLQSISSMDE 546
TG +++ DE
Sbjct: 367 TGGSHTGLTASDE 379
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 724 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 783
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 372 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 421
Query: 784 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 422 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 470
>gi|82523710|emb|CAI78491.1| guanosine polyphosphate pyrophosphohydrolase [uncultured beta
proteobacterium]
Length = 739
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A F++RAH GQFRK+G+PY++H + ILA T+ A +LHDVV+D
Sbjct: 48 IEEAYEFSRRAHEGQFRKSGEPYISHPLAVAGILA-----GWHLDAQTLTAALLHDVVED 102
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ IE FG VA LV GVS+L + + H +A + R MLL
Sbjct: 103 TPATAVEIEARFGKAVALLVEGVSKLD------------KLAFASEQHAQAENFRKMLLA 150
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+L+KLADRLHNM T+ ++PP K R +A ETL I+ +A+RLGL ++ ELEDL
Sbjct: 151 MAQDVRVILVKLADRLHNMHTMGSMPPEKRRRIATETLEIYAPIANRLGLHSVYQELEDL 210
Query: 284 CF 285
F
Sbjct: 211 GF 212
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 17/167 (10%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T++ R K L+SI+ KM+ K++ +V+D RVVV D+ CY L
Sbjct: 254 IEATITGREKHLFSIYRKMQEKNLAFSEVFDIYGFRVVVRDQ---------PSCYLALGA 304
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI G+F DYI PK +GYQSLH+ + GP+G+ +EVQIRT M+ AE G+A+HW
Sbjct: 305 LHALYKPIPGKFKDYIAIPKANGYQSLHSILFGPNGTPIEVQIRTVDMNRLAESGVASHW 364
Query: 530 LYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
+YK + N L + + DI+A S + +H + DLF
Sbjct: 365 MYKSSDNALNDVQARTHRWLQSLLDIQADHGDSTEFLEH--IKIDLF 409
>gi|343511489|ref|ZP_08748649.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
scophthalmi LMG 19158]
gi|343515613|ref|ZP_08752665.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. N418]
gi|342797931|gb|EGU33566.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
scophthalmi LMG 19158]
gi|342798044|gb|EGU33677.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. N418]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ KD H + D A RV+V A CY +L
Sbjct: 228 GLTARVVGREKNLFSIYNKMKTKDQRFHTIMDIYAFRVIVD---------AADTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQS+HT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRVKDYIAVPKANGYQSIHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGDR 347
>gi|28896933|ref|NP_796538.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
parahaemolyticus RIMD 2210633]
gi|153837887|ref|ZP_01990554.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Vibrio parahaemolyticus AQ3810]
gi|260365879|ref|ZP_05778373.1| RelA/SpoT family protein [Vibrio parahaemolyticus K5030]
gi|260877834|ref|ZP_05890189.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|260895517|ref|ZP_05904013.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
gi|260902541|ref|ZP_05910936.1| RelA/SpoT family protein [Vibrio parahaemolyticus AQ4037]
gi|417321029|ref|ZP_12107569.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
parahaemolyticus 10329]
gi|433656471|ref|YP_007273850.1| GTP pyrophosphokinase, (p)ppGpp synthetase II [Vibrio
parahaemolyticus BB22OP]
gi|28805141|dbj|BAC58422.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
parahaemolyticus RIMD 2210633]
gi|149748750|gb|EDM59595.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Vibrio parahaemolyticus AQ3810]
gi|308088523|gb|EFO38218.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
gi|308089798|gb|EFO39493.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|308109676|gb|EFO47216.1| RelA/SpoT family protein [Vibrio parahaemolyticus AQ4037]
gi|308113428|gb|EFO50968.1| RelA/SpoT family protein [Vibrio parahaemolyticus K5030]
gi|328471709|gb|EGF42586.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
parahaemolyticus 10329]
gi|432507159|gb|AGB08676.1| GTP pyrophosphokinase, (p)ppGpp synthetase II [Vibrio
parahaemolyticus BB22OP]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|153833931|ref|ZP_01986598.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Vibrio harveyi HY01]
gi|148869769|gb|EDL68746.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Vibrio harveyi HY01]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|148981871|ref|ZP_01816556.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrionales
bacterium SWAT-3]
gi|145960722|gb|EDK26063.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrionales
bacterium SWAT-3]
Length = 504
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLPARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGSR 347
>gi|254228571|ref|ZP_04921996.1| RelA/SpoT family protein [Vibrio sp. Ex25]
gi|262392638|ref|YP_003284492.1| GTP pyrophosphokinase [Vibrio sp. Ex25]
gi|451972732|ref|ZP_21925935.1| RelA/SpoT family protein [Vibrio alginolyticus E0666]
gi|151938953|gb|EDN57786.1| RelA/SpoT family protein [Vibrio sp. Ex25]
gi|262336232|gb|ACY50027.1| GTP pyrophosphokinase (p)ppGpp synthetase
II/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Vibrio sp. Ex25]
gi|451931300|gb|EMD78991.1| RelA/SpoT family protein [Vibrio alginolyticus E0666]
Length = 706
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|307155133|ref|YP_003890517.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7822]
gi|306985361|gb|ADN17242.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7822]
Length = 750
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 107/187 (57%), Gaps = 17/187 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H I +L L S + AG LHDVV+D
Sbjct: 45 RAFNFAYELHKGQYRKSGEPYIAHPIAVAGLLRDLGGDS-----TMIAAGFLHDVVEDTE 99
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+L IE+ FGDEV +LV GV++LS N + R +A + R M L M
Sbjct: 100 VTLEDIEQRFGDEVRQLVEGVTKLSKFNFSSKTER------------QAENFRRMFLAMA 147
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L K R++A ET I+ LA+RLG+ K ELEDLCF
Sbjct: 148 KDIRVIVVKLADRLHNMRTLEHLATEKQRSIALETREIFAPLANRLGIGRFKWELEDLCF 207
Query: 286 AVLQMRA 292
L+ A
Sbjct: 208 KYLEPEA 214
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K LY I+ KM+R+ H++YD ALR++V K+ CY L IVH +
Sbjct: 254 IQGRPKHLYGIYHKMQRQRKEFHEIYDIAALRIIVETKDE---------CYRALAIVHDV 304
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PK + YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FKPIPGRFKDYIGLPKSNRYQSLHTTVVGFTGRPLEVQIRTLEMHHIAEYGIAAHWKYKE 364
Query: 534 TGNKLQSISSMDE 546
+G +++S DE
Sbjct: 365 SGGSNYNLTSEDE 377
>gi|377563150|ref|ZP_09792501.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sputi NBRC 100414]
gi|377529398|dbj|GAB37666.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia sputi NBRC 100414]
Length = 802
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q A A H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 87 YPKADIALLQHAYDVADERHRGQNRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 141
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++E EFG EVA LV GV++L + LG EA
Sbjct: 142 LLHDTVEDTGYTLEALESEFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 186
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 187 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 246
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 247 TVKWELEDLSFAILH 261
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ D ++ CY+ + +VH
Sbjct: 302 TVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCDD---------VRDCYAAVGVVHS 352
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LE+QIRT MH AE G+AAHW YK
Sbjct: 353 LWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEIQIRTNDMHRTAEFGIAAHWRYK 412
Query: 533 ETGNKLQSISSMDESDIE 550
E G + + D ++I+
Sbjct: 413 EGGYRDRKGRKTDTAEID 430
>gi|359421083|ref|ZP_09213013.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia araii NBRC 100433]
gi|358242948|dbj|GAB11082.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia araii NBRC 100433]
Length = 819
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H GQ+RK+GD Y+TH + ILA L T+VA
Sbjct: 103 YPKADVSLLQRAYDIAEAQHEGQYRKSGDSYITHPLAVATILADL-----GMDTTTLVAA 157
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL I +FG EVA LV GV++L V GT EA
Sbjct: 158 LLHDTVEDTGYSLEQITGDFGPEVAHLVDGVTKLD------------KVALGTAA--EAE 203
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 204 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 263
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 264 VKWELEDLAFAILH 277
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ D ++ CY+ + +
Sbjct: 315 LSAIVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCED---------VRDCYAAVGV 365
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRTQ MH AE G+AAHW
Sbjct: 366 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTQDMHRTAEFGIAAHW 425
Query: 530 LYKETGNK 537
YKE+G +
Sbjct: 426 RYKESGYR 433
>gi|325568309|ref|ZP_08144676.1| GTP diphosphokinase [Enterococcus casseliflavus ATCC 12755]
gi|420264623|ref|ZP_14767252.1| GTP diphosphokinase [Enterococcus sp. C1]
gi|325158078|gb|EGC70231.1| GTP diphosphokinase [Enterococcus casseliflavus ATCC 12755]
gi|394767937|gb|EJF48167.1| GTP diphosphokinase [Enterococcus sp. C1]
Length = 736
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 108/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH QFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKALDYATEAHKEQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L ++EEFG +VA LV GV++L I HEE A + R ML
Sbjct: 83 TDVTLADLKEEFGADVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+++KLADRLHNMRT+ L K R +AQET+ I+ LA RLG+ +K ELE
Sbjct: 129 IAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETMEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D+ L
Sbjct: 189 DISLRYL 195
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGTIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRT +MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGNPVEIQIRTHEMHEIAEFGVAAHWAYKE 348
>gi|315916982|ref|ZP_07913222.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium gonidiaformans ATCC 25563]
gi|313690857|gb|EFS27692.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium gonidiaformans ATCC 25563]
Length = 725
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 19/188 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V+ A A+ +H GQ+RK+G+ Y+ H I +IL L K DT++A ILHD+V
Sbjct: 21 DKVKLAYYLAEESHEGQYRKSGEAYIMHPIEVAKILVGL-----KSDTDTIIAAILHDIV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L IE FG VA LV GV++L ++ GT E ++R M+
Sbjct: 76 EDTFITLADIEYNFGKNVAHLVDGVTKLK------------SLPNGTKNQSE--NIRKMI 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M + V+LIKLADRLHNMR + + P K A+AQETL ++ LA RLG+ +K ELE
Sbjct: 122 LAMTQNLHVILIKLADRLHNMRALKFMKPEKQIAIAQETLEVYAPLAHRLGIAKIKWELE 181
Query: 282 DLCFAVLQ 289
DLC L
Sbjct: 182 DLCLYYLH 189
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM +YD +R++V + + CY +L
Sbjct: 226 GIKGQVKGRFKHFYSIYKKMYELGKEFDDIYDLMGVRIIVSNTSD---------CYHVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + P+ G F DYI PK + YQS+HT + GP +E+QIRT++M + AE G+AAH
Sbjct: 277 EVHSRYTPVPGRFKDYIAVPKSNNYQSIHTTIVGPLAKFIEIQIRTEEMDKVAEEGVAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WAYKE 341
>gi|163802264|ref|ZP_02196159.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. AND4]
gi|159174069|gb|EDP58879.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio sp. AND4]
Length = 706
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY L
Sbjct: 228 GLNARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPSRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|241896301|ref|ZP_04783597.1| GTP diphosphokinase [Weissella paramesenteroides ATCC 33313]
gi|241870462|gb|EER74213.1| GTP diphosphokinase [Weissella paramesenteroides ATCC 33313]
Length = 746
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 115/208 (55%), Gaps = 22/208 (10%)
Query: 99 FNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+K A FA H Q RK+G+PY+ H I ILA L DTVVAG
Sbjct: 23 MNDEHVKKVDKAYQFAYHLHQEQKRKSGEPYIIHPIQVAGILAELHMDP-----DTVVAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D +L +E+ FG +VA +V GVS+LS I R + A
Sbjct: 78 YLHDVVEDTTATLADVEQAFGHDVAIIVDGVSKLSRIKYKSSREQL------------AE 125
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R +LL M D RV+++KLADRLHNMRT+ AL K + +A ETL I+ LA RLG+
Sbjct: 126 NHRKLLLAMSHDIRVIIVKLADRLHNMRTLSALREEKQKRIASETLEIYAPLADRLGIMT 185
Query: 276 LKAELEDLCFAVLQMRA--DLASMWSPR 301
+K ELED+ L A D+A + R
Sbjct: 186 IKWELEDMALRYLNFEAYHDIAKSMNLR 213
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 26/202 (12%)
Query: 364 HDLAKSSEAQKKAKV-VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLY 422
HD+AKS +++ ++ + D ++ E E I+ ++ EV R K +Y
Sbjct: 204 HDIAKSMNLRRQERLEIVDQAVS-----------EIEHAITDLHLDHTEVY--GRPKHIY 250
Query: 423 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFD 482
SI+ KM K+ ++YD A+RV+V I Y++L +H W P+ G F
Sbjct: 251 SIYRKMVDKNKRFEEIYDLLAIRVLVD---------TIPETYAVLGAIHARWTPMPGRFK 301
Query: 483 DYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE---TGNKLQ 539
DYI PK +GYQSLHT+V GP G LEVQIRT +MHE AE G+AAHW YKE G +Q
Sbjct: 302 DYIALPKANGYQSLHTSVIGPGGRPLEVQIRTYQMHEIAEFGIAAHWAYKEGNFAGADVQ 361
Query: 540 SISSMDESDIEASSSLSKDTDD 561
+ + I+ L D D
Sbjct: 362 NADQQKLNVIQGILELQADAQD 383
>gi|386851465|ref|YP_006269478.1| GTP pyrophosphokinase [Actinoplanes sp. SE50/110]
gi|359838969|gb|AEV87410.1| GTP pyrophosphokinase [Actinoplanes sp. SE50/110]
Length = 810
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 110/193 (56%), Gaps = 19/193 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q+QKA A R H GQ+RK+GDPY+TH + ILA L T+VA
Sbjct: 98 HPKGDVRQLQKAFDVAARWHSGQYRKSGDPYITHPLAVATILANL-----GMDTTTLVAA 152
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D L + +FG EVA LV GV++L R+ + +A
Sbjct: 153 LLHDTIEDTDYGLEQMRNDFGAEVALLVDGVTKLD----------RVKLGDAA----KAE 198
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LP AK A+ETL I LA RLG+
Sbjct: 199 TIRKMVVAMAKDPRVLVIKLADRLHNMRTLTFLPRAKQEQKAKETLEILAPLAHRLGMNT 258
Query: 276 LKAELEDLCFAVL 288
+K ELEDL F L
Sbjct: 259 IKWELEDLAFGTL 271
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 415 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 474
+ R K LYSI+ KM + + +YD +R++V ++ CY+ L ++H W
Sbjct: 315 TGRPKHLYSIYQKMIVRGRDFNDIYDLVGVRILVD---------TVRDCYAALGVIHANW 365
Query: 475 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE G+AAHW YKE
Sbjct: 366 QPVPGRFKDYIAMPKFNMYQSLHTTVIGPTGKPVEMQIRTFAMHRTAEFGIAAHWKYKE 424
>gi|343506854|ref|ZP_08744316.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
ichthyoenteri ATCC 700023]
gi|342801202|gb|EGU36680.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
ichthyoenteri ATCC 700023]
Length = 706
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ KD H + D A RV+V A CY +L
Sbjct: 228 GLTARVVGREKNLFSIYNKMKTKDQRFHTIMDIYAFRVIVD---------AADTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQS+HT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRVKDYIAVPKANGYQSIHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGDR 347
>gi|84386373|ref|ZP_00989401.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
splendidus 12B01]
gi|84378797|gb|EAP95652.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
splendidus 12B01]
Length = 708
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R TG+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARNAHEGQTRSTGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 79/131 (60%), Gaps = 13/131 (9%)
Query: 411 EVTLSSRL----KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
EV LS+R+ K+L+SI++KM+ K+ H + D A RVVV + CY
Sbjct: 226 EVGLSARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRA 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+A
Sbjct: 277 LGQAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMEQMADKGVA 336
Query: 527 AHWLYKETGNK 537
AHW YK +G++
Sbjct: 337 AHWSYKGSGSR 347
>gi|428208449|ref|YP_007092802.1| (p)ppGpp synthetase I SpoT/RelA [Chroococcidiopsis thermalis PCC
7203]
gi|428010370|gb|AFY88933.1| (p)ppGpp synthetase I, SpoT/RelA [Chroococcidiopsis thermalis PCC
7203]
Length = 763
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 116/209 (55%), Gaps = 16/209 (7%)
Query: 85 TFIVDGVDVTGYPIFNDEQ-VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPS 143
T +V+ ++ P D Q + +A FA + H GQ+RK+G+PY+ H + +L L
Sbjct: 25 TCLVENSELETQPTATDNQLICRAFNFAYQLHQGQYRKSGEPYICHPVAVAGLLRDLGGG 84
Query: 144 SGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN 203
S + AG LHDVV+D +L IE++FG EV LV GV++LS ++
Sbjct: 85 SA-----MIAAGFLHDVVEDTDVTLEDIEQQFGAEVKHLVEGVTKLSKFSETF------- 132
Query: 204 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 263
+ +A + R M L M D RV+++KLADRLHNMRT+ LP K R +A ET I
Sbjct: 133 ---SSKTERQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPDEKRRRIALETREI 189
Query: 264 WCSLASRLGLWALKAELEDLCFAVLQMRA 292
+ LA+RLG+ K ELEDL F L+ A
Sbjct: 190 FAPLANRLGIGTFKWELEDLTFKYLEPEA 218
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ +S R K LY I+ KM+R+ H++YD A+R++V + CY L +VH
Sbjct: 256 IDISGRPKHLYGIYQKMQRQQKEFHEIYDLAAIRIIVKTN---------EECYRALAVVH 306
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT MH AE+G+AAHW Y
Sbjct: 307 DAFRPIPGRFKDYIGLPKPNRYQSLHTTVVGFTGRPLEVQIRTIDMHHIAEYGIAAHWKY 366
Query: 532 KETG 535
KETG
Sbjct: 367 KETG 370
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 730 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 789
++ K LR +L W+ L+ +S D++ EV + P G+++ L
Sbjct: 380 VDEKFTWLRQLLEWQNDLKDAQEYLESI--------KDNLFEDEVYVFT-PKGDVVPLSP 430
Query: 790 GSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
GSTA D A + VG VNG++V +T LK+GDIV++
Sbjct: 431 GSTAIDFAYRIHTEVGNHCAGAKVNGRMVTLDTALKNGDIVDI 473
>gi|350529940|ref|ZP_08908881.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
rotiferianus DAT722]
Length = 706
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|341821272|emb|CCC57628.1| GTP diphosphokinase [Weissella thailandensis fsh4-2]
Length = 746
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 115/208 (55%), Gaps = 22/208 (10%)
Query: 99 FNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+K A FA H Q RK+G+PY+ H I ILA L DTVVAG
Sbjct: 23 MNDEHVKKVDKAYQFAFHLHQEQKRKSGEPYIIHPIQVAGILAELHMDP-----DTVVAG 77
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
LHDVV+D +L +E+ FG +VA +V GVS+LS I R + A
Sbjct: 78 YLHDVVEDTTATLADVEQAFGHDVAVIVDGVSKLSRIKYKSSRE------------QLAE 125
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R +LL M D RV+++KLADRLHNMRT+ AL K R +A ETL I+ LA RLG+
Sbjct: 126 NHRKLLLAMSHDIRVIIVKLADRLHNMRTLSALREEKQRRIAAETLEIYAPLADRLGIMT 185
Query: 276 LKAELEDLCFAVLQMRA--DLASMWSPR 301
+K ELED+ L A D+A + R
Sbjct: 186 IKWELEDMALRYLNFDAYHDIAKSMNLR 213
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 22/173 (12%)
Query: 364 HDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYS 423
HD+AKS +++ + L +EA++ E+ S + + + R K +YS
Sbjct: 204 HDIAKSMNLRRQER-----------LEIVDEAVD-EIKHSITDLHLANTEVYGRPKHIYS 251
Query: 424 IFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDD 483
I+ KM K+ ++YD A+RV+V I Y++L +H W P+ G F D
Sbjct: 252 IYRKMVDKNKRFEEIYDLLAIRVLVD---------TIPETYAVLGAIHARWTPMPGRFKD 302
Query: 484 YIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
YI PK +GYQSLHT+V GP G LEVQIRT KMHE AE+G+AAHW YKE GN
Sbjct: 303 YIALPKANGYQSLHTSVIGPGGRPLEVQIRTYKMHEIAEYGIAAHWAYKE-GN 354
>gi|225593179|gb|ACN96096.1| (p)ppGpp synthetase I [Fischerella sp. MV11]
Length = 758
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 17/194 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
++ + +A FA + H GQ+RK+G+PY+ H I + ML G A+ + AG LH
Sbjct: 39 YDTSLICRAFEFAYQLHQGQYRKSGEPYICHPIA---VAGMLRDLGGSAAM--IAAGFLH 93
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
DVV+D ++ IE+ FG EV LV GV++LS +IN T +A + R
Sbjct: 94 DVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLS----------KINFKSKT--ESQAENFR 141
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
M L M D RV+++KLADRLHNMRT+ +P K R A ET I+ LA+RLG+W K
Sbjct: 142 RMFLAMAQDIRVIVVKLADRLHNMRTLEYMPDEKRRRTATETREIFAPLANRLGIWRFKW 201
Query: 279 ELEDLCFAVLQMRA 292
ELEDL F L+ A
Sbjct: 202 ELEDLAFKYLEPEA 215
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 255 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 305
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 365
Query: 534 TGNKLQSISSMDE 546
TG +++ DE
Sbjct: 366 TGGSHTGLTASDE 378
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 724 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 783
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 371 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 420
Query: 784 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 421 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 469
>gi|257866975|ref|ZP_05646628.1| RelA/SpoT protein [Enterococcus casseliflavus EC30]
gi|257873309|ref|ZP_05652962.1| RelA/SpoT protein [Enterococcus casseliflavus EC10]
gi|257877051|ref|ZP_05656704.1| RelA/SpoT protein [Enterococcus casseliflavus EC20]
gi|257801031|gb|EEV29961.1| RelA/SpoT protein [Enterococcus casseliflavus EC30]
gi|257807473|gb|EEV36295.1| RelA/SpoT protein [Enterococcus casseliflavus EC10]
gi|257811217|gb|EEV40037.1| RelA/SpoT protein [Enterococcus casseliflavus EC20]
Length = 736
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 108/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH QFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKALDYATEAHKEQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L ++EEFG +VA LV GV++L I HEE A + R ML
Sbjct: 83 TDVTLADLKEEFGADVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+++KLADRLHNMRT+ L K R +AQET+ I+ LA RLG+ +K ELE
Sbjct: 129 IAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETMEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D+ L
Sbjct: 189 DISLRYL 195
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGTIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRT +MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGNPVEIQIRTHEMHEIAEFGVAAHWAYKE 348
>gi|242044820|ref|XP_002460281.1| hypothetical protein SORBIDRAFT_02g025940 [Sorghum bicolor]
gi|241923658|gb|EER96802.1| hypothetical protein SORBIDRAFT_02g025940 [Sorghum bicolor]
Length = 712
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
IF++E V KA A++AH GQ R +G+PYL HC+ T +LA + G A V AG+L
Sbjct: 208 IFHEELVVKAFLEAEKAHRGQTRASGEPYLQHCVETAVLLAKI----GANAT-VVSAGLL 262
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD +DD+ I FG VA LV GVS+LS++++L R + N T+ EA+ L
Sbjct: 263 HDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARDN---NTASRTV---EADRL 316
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
MLL M D R VLIKLADRLHNM+T+ AL K + A+ET I+ LA+RLG+ + K
Sbjct: 317 HTMLLAMAD-ARAVLIKLADRLHNMKTLEALSLVKQQRFAKETKEIFVPLANRLGIASWK 375
Query: 278 AELEDLCFAVLQ 289
+LE+LCF L
Sbjct: 376 DQLENLCFKYLN 387
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 75/121 (61%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R KSLYSI SKM +K++ + +++D LR+VV ++ CY L +VH+
Sbjct: 427 NLSGRHKSLYSIHSKMLKKNLTMEEIHDIHGLRLVVD---------TVEDCYEALCVVHK 477
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI PK +GY+SLHT V EVQIRT++MH AE+G AAHW YK
Sbjct: 478 LWPRVTGRFKDYISRPKLNGYRSLHTVVMSEGVHPFEVQIRTKEMHLQAEYGFAAHWRYK 537
Query: 533 E 533
E
Sbjct: 538 E 538
>gi|325982004|ref|YP_004294406.1| (p)ppGpp synthetase I SpoT/RelA [Nitrosomonas sp. AL212]
gi|325531523|gb|ADZ26244.1| (p)ppGpp synthetase I, SpoT/RelA [Nitrosomonas sp. AL212]
Length = 701
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 110/183 (60%), Gaps = 17/183 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++ A +F AH GQFRK+G+PY++H + RIL+ L T+ A +LHDVV+
Sbjct: 22 QLKNAYSFGLGAHSGQFRKSGEPYISHPVAVARILSKL-----HLDAPTLTAALLHDVVE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S I E FG+ VA+LV GVS+L+ + T +A + R MLL
Sbjct: 77 DTDISKAEISERFGEPVAELVDGVSKLA------------KIQFQTQEEAQAENFRKMLL 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+LIKLADRLHNM+T+ + PAK R++A+ETL I+ +A RLGL + EL++
Sbjct: 125 AMARDVRVILIKLADRLHNMQTLEVMLPAKQRSIARETLEIYAPIAHRLGLNNIYQELQE 184
Query: 283 LCF 285
L F
Sbjct: 185 LGF 187
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 13/165 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E ++ R K LYSI++KM K + +V D RV+V D I CY L +
Sbjct: 229 LEAEVTGREKHLYSIYNKMVEKHLSFSEVLDIYGFRVIVKD---------IPSCYIALGM 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI G+F DYI PK + YQSLH+ + GP G +E+QIRT +MH AE+G+A+HW
Sbjct: 280 LHSLYKPIPGKFKDYIAIPKNNDYQSLHSTLLGPFGIPIEIQIRTAEMHRIAENGVASHW 339
Query: 530 LYKETGNKLQSI----SSMDESDIEASSSLSKDTDDHNPLDTDLF 570
LYK + S ++ +E SS + ++ L DLF
Sbjct: 340 LYKNLDGNFDELHLKTSQWLQNLMETLSSSTDSSEFLEHLKIDLF 384
>gi|377560470|ref|ZP_09789973.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia otitidis NBRC 100426]
gi|377522332|dbj|GAB35138.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia otitidis NBRC 100426]
Length = 812
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q A A H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 97 YPKADIALLQHAYDVADERHRGQKRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 151
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++E EFG EVA LV GV++L + LG EA
Sbjct: 152 LLHDTVEDTGYTLEALESEFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 196
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 197 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 256
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 257 TVKWELEDLSFAILH 271
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K +SI+ KM K ++D +R++ D ++ CY+ + +VH
Sbjct: 312 TVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCDD---------VRDCYAAVGVVHS 362
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW YK
Sbjct: 363 LWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTNDMHRTAEFGIAAHWRYK 422
Query: 533 ETGNKLQSISSMDESDIE 550
E+G + + D ++I+
Sbjct: 423 ESGYRDRKGRKSDAAEID 440
>gi|91224995|ref|ZP_01260254.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
alginolyticus 12G01]
gi|269965889|ref|ZP_06179982.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
alginolyticus 40B]
gi|91190241|gb|EAS76511.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
alginolyticus 12G01]
gi|269829442|gb|EEZ83683.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
alginolyticus 40B]
Length = 706
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLNARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK+ G+K
Sbjct: 339 WSYKDKGDK 347
>gi|86137269|ref|ZP_01055847.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative,
partial [Roseobacter sp. MED193]
gi|85826593|gb|EAQ46790.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative,
partial [Roseobacter sp. MED193]
Length = 385
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N E++ +A A+ + H GQFR +G+PY TH + +L + +R D T++
Sbjct: 16 PKTNAEKIAEAFAYGEEMHEGQFRHSGEPYFTHPVAVAALL------TEQRLDDATIITA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S + FG+EVA+LV GV++L+ N+ + ++A
Sbjct: 70 LLHDTIEDTKASYEEVARRFGEEVAELVDGVTKLT------------NLQLSSRETKQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 118 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPEKQAQKARETMDIYAPLAGRMGMQW 177
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 178 MREELEDLAFKVL----------NPEGRQSIIRRFVTL 205
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 20/172 (11%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC---CYSL 466
+E + R K YSI+ KM+ KD G ++ D RV+ +C Y
Sbjct: 229 IEAEVFGRAKKPYSIWRKMQAKDQGFSRLSDIYGFRVIT------------RCEEDSYRA 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L +H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+A
Sbjct: 277 LGAIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAETGVA 336
Query: 527 AHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 578
AHW Y++ G + Q+ ++D + AS + D ++ D D F + L+M
Sbjct: 337 AHWSYRD-GVRSQNPFAVDPAKWIASLTEQFDAEE----DHDEFLEAVKLEM 383
>gi|302670706|ref|YP_003830666.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
gi|302395179|gb|ADL34084.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
Length = 760
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+PY+ H + ILA L + +T+ AG+LHDVV+D
Sbjct: 42 IEKAYNQAAEAHQGQLRKSGEPYIIHPLCVAIILADL-----EMDKETIAAGLLHDVVED 96
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I+E FG +VA LV GV++L+ + QL + Q + +A +LR M L
Sbjct: 97 TICTKEEIQESFGADVALLVDGVTKLTAL-QLSTDNTNKTQEQIDM---QAQNLRKMFLA 152
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ +PP K + +AQETL I+ +A RLG+ +K EL+DL
Sbjct: 153 MAKDIRVILIKLADRLHNMRTLAHMPPEKQQRIAQETLDIYSPIAGRLGISRIKVELDDL 212
Query: 284 CFAVLQ 289
L+
Sbjct: 213 SLKYLK 218
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R+K +SI+ KMR ++ + ++YD A+R++V ++ CY+ L
Sbjct: 255 GIEGEVNGRVKHFFSIYKKMRNQNKTLDQIYDLFAIRIIVA---------TVKDCYAALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + G G E+QIRT MH+ AE+G+AAH
Sbjct: 306 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGQTGQPFEIQIRTYDMHKAAEYGIAAH 365
Query: 529 WLYKETGN 536
W YKET +
Sbjct: 366 WKYKETSD 373
>gi|365175246|ref|ZP_09362677.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
gi|363613138|gb|EHL64661.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
Length = 784
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
+ ++ R K YSI+ KMRRK++ + ++YD ALRV+V I CY +L
Sbjct: 281 NINASIKGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVIV---------KTIGECYQVLG 331
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G FDDYI NPK + YQSLHT V GP+G LEVQIRT++MH AE+G+AAH
Sbjct: 332 LVHTIWKPIPGLFDDYIANPKSNMYQSLHTTVVGPEGEPLEVQIRTKEMHLLAEYGIAAH 391
Query: 529 WLYKETGNKLQSI 541
W YKE G+K+ ++
Sbjct: 392 WNYKEGGHKVDNL 404
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A F+ AH Q R TG+PY+ H + IL SS + +T+VA +LHDV++D
Sbjct: 76 IGEAFVFSSVAHGKQRRHTGEPYIIHTVSVAAIL-----SSMEIDRETIVASLLHDVLED 130
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ + E+FG++V LV GV++L + ++ ++ +LR M +
Sbjct: 131 TATTPQQLSEKFGEDVVILVDGVTKLG------------KLQFKSVEEYQSENLRKMFVV 178
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RVVLIKLADRLHNMRTI + K ++A+ETL I+ LA RLG++ +K ELEDL
Sbjct: 179 MAKDIRVVLIKLADRLHNMRTISSHKREKQLSIARETLEIYAPLAHRLGIYQVKRELEDL 238
Query: 284 CFAVL 288
F +L
Sbjct: 239 SFRIL 243
>gi|220932056|ref|YP_002508964.1| (p)ppGpp synthetase I SpoT/RelA [Halothermothrix orenii H 168]
gi|219993366|gb|ACL69969.1| (p)ppGpp synthetase I, SpoT/RelA [Halothermothrix orenii H 168]
Length = 716
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A FAK AH GQFR +G+P++ H + ILA L + + ++ A +LHDVV
Sbjct: 20 ELVKRAYNFAKDAHEGQFRVSGEPFIEHPLGVACILAEL-----ELDIISISAALLHDVV 74
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +IEEEFGDE+A LV GV++L+ + + +A +LR M
Sbjct: 75 EDTSVTSKNIEEEFGDEIALLVDGVTKLT------------RLEFKSKEEHQAENLRKMF 122
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M +D RVVLIKLADRLHNMRT+ L K A+ETL I+ LA RLG+ LK ELE
Sbjct: 123 LAMSEDIRVVLIKLADRLHNMRTLRFLAKEKQVEKAKETLEIYAPLAHRLGMSRLKWELE 182
Query: 282 DLCFAVL 288
DL F +
Sbjct: 183 DLSFRFI 189
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LYSI+ KM+RK+V +++YD A+R++V +++ CY +L
Sbjct: 227 GILAEIYGRPKHLYSIYQKMKRKEVDFNEIYDLTAIRIIVN---------SVKECYEVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IVHEIWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPKGDPLEVQIRTPEMHRTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
>gi|311106548|ref|YP_003979401.1| RelA/SpoT family protein [Achromobacter xylosoxidans A8]
gi|310761237|gb|ADP16686.1| RelA/SpoT family protein [Achromobacter xylosoxidans A8]
Length = 764
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K V+ + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDVNALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K+LY I+ KM + V D RV+V + CY L
Sbjct: 280 GIEAEVTGREKTLYGIYRKMVDQKKSFSDVLDIYGFRVIVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|421481259|ref|ZP_15928845.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter piechaudii HLE]
gi|400200709|gb|EJO33659.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter piechaudii HLE]
Length = 764
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K V+ + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDVNALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K+LY I+ KM + V D RV+V + CY L
Sbjct: 280 GIEAEVTGREKTLYGIYRKMVDQKKSFSDVLDIYGFRVIVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|219856114|ref|YP_002473236.1| hypothetical protein CKR_2771 [Clostridium kluyveri NBRC 12016]
gi|219569838|dbj|BAH07822.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 733
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+++ V+KA FA AH Q R++G+PY+ H + ILA + + T+VAG+LH
Sbjct: 23 IDEKMVKKAYYFADEAHKKQKRESGEPYIMHPVEVACILAEMGMDTS-----TIVAGLLH 77
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
D+V+D S + EF EVA LV GV++L + T ++A+++R
Sbjct: 78 DIVEDTEFSREDVSREFSVEVANLVEGVTKLG------------KIEYKTKEEQQADNVR 125
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
MLL M DD RV+LIKLADRLHNMRT+ LP K + A+ET I+ LA RLG+ +K
Sbjct: 126 KMLLAMSDDIRVILIKLADRLHNMRTLKFLPVKKQKEKAKETFDIYAPLAYRLGMSKIKW 185
Query: 279 ELEDLCF 285
ELEDL F
Sbjct: 186 ELEDLAF 192
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K YSI+ KM +K+ I +++D A+R++V ++ CY+ L
Sbjct: 233 GINTDIEGRPKHFYSIYRKMVKKNKTIDQIFDLTAVRILVS---------TMKDCYAALG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ P+ G F DYI PK + YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 284 IAHTIYKPVPGRFKDYIAMPKANMYQSLHTTVIGPQGKPFEIQIRTFEMHKTAEYGIAAH 343
Query: 529 WLYKETGNKLQSI 541
W YKE + + I
Sbjct: 344 WKYKEGADTAEDI 356
>gi|427706762|ref|YP_007049139.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc sp. PCC 7107]
gi|427359267|gb|AFY41989.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc sp. PCC 7107]
Length = 756
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 109/187 (58%), Gaps = 17/187 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + HHGQFRK+G+PY+ H + +L L G A+ + AG LHDVV+D
Sbjct: 45 RAFTFAYQLHHGQFRKSGEPYICHPVAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTD 99
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IEE FG EV LV GV++LS +IN T +A + R M L M
Sbjct: 100 VTIEEIEELFGSEVRLLVEGVTKLS----------KINFKSKT--ESQAENFRRMFLAMA 147
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ + R AQET I+ LA+RLG+W +K ELEDL F
Sbjct: 148 QDIRVIVVKLADRLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRLGIWHIKWELEDLAF 207
Query: 286 AVLQMRA 292
L+ A
Sbjct: 208 KYLEPEA 214
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 12/160 (7%)
Query: 390 VACEEALEKELLISTSYIPGMEV---TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 446
A EE L K I +P + +S R K LYSI+ KM+R+ H++YD ALR+
Sbjct: 227 TAREEKLAKATEILRERLPHAGIHCLDISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRI 286
Query: 447 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 506
+V + CY L +VH + PI G F DYI PKP+ YQSLHT V G G
Sbjct: 287 IVQTN---------EECYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGR 337
Query: 507 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 546
LE+QIRT +MH AE+G+AAHW YKETG ++ DE
Sbjct: 338 PLEIQIRTLEMHHIAEYGIAAHWKYKETGGSNSQFTASDE 377
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 790
+ K LR +L W+ L+ S D++ +V + P G+++ L G
Sbjct: 376 DEKFTWLRQLLEWQSDLKDAQEYLDSV--------KDNLFEDDVYVFT-PKGDVVSLNPG 426
Query: 791 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
ST+ D A + VG VNG++V +T L +GDIVE+
Sbjct: 427 STSIDFAYRIHTEVGNHCSGSKVNGRIVPLSTRLHNGDIVEI 468
>gi|417951253|ref|ZP_12594360.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio splendidus
ATCC 33789]
gi|342805205|gb|EGU40483.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio splendidus
ATCC 33789]
Length = 708
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEEKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLPARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGSR 347
>gi|74316489|ref|YP_314229.1| metal dependent phosphohydrolase [Thiobacillus denitrificans ATCC
25259]
gi|74055984|gb|AAZ96424.1| Metal dependent phosphohydrolase, HD region [Thiobacillus
denitrificans ATCC 25259]
Length = 738
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 108/183 (59%), Gaps = 17/183 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A F++ AH GQFRK+G+PY++H + ILA T+ A +LHDVV+
Sbjct: 47 QLEQAYEFSRSAHEGQFRKSGEPYISHPLAVAAILA-----DWHLDAQTLCAALLHDVVE 101
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + G IE FG VA LV GVS+L + Q H +A + R MLL
Sbjct: 102 DTPATAGEIEARFGKAVAVLVGGVSKLDKLA--------FESEQ----HAQAENFRKMLL 149
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADRLHNM T+ A+P K R +A ETL I+ +A+RLGL ++ ELED
Sbjct: 150 AMAQDVRVILVKLADRLHNMHTMGAMPAEKRRRIATETLEIYAPIANRLGLHSVYQELED 209
Query: 283 LCF 285
L F
Sbjct: 210 LGF 212
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 17/167 (10%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E +S R K LYSI+ KM+ K++ +V+D RVVV D+ PA CY L
Sbjct: 254 IEAAISGREKHLYSIYRKMQEKNLAFSEVFDIYGFRVVVRDQ------PA---CYLALGA 304
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI G+F DYI PK +GYQSLH+ + GP+G+ +EVQIRT M+ AE G+A+HW
Sbjct: 305 LHALYKPIPGKFKDYIAIPKANGYQSLHSILFGPNGTPIEVQIRTVDMNRLAESGVASHW 364
Query: 530 LYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
+YK L + + DI+A S + +H + DLF
Sbjct: 365 MYKSADTALNDVQTRTHRWLQSLLDIQADHGDSPEFLEH--IKVDLF 409
>gi|456989321|gb|EMG24130.1| putative GTP diphosphokinase, partial [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 493
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|153955745|ref|YP_001396510.1| RelA protein [Clostridium kluyveri DSM 555]
gi|146348603|gb|EDK35139.1| RelA [Clostridium kluyveri DSM 555]
Length = 726
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+++ V+KA FA AH Q R++G+PY+ H + ILA + + T+VAG+LH
Sbjct: 16 IDEKMVKKAYYFADEAHKKQKRESGEPYIMHPVEVACILAEMGMDTS-----TIVAGLLH 70
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLR 218
D+V+D S + EF EVA LV GV++L + T ++A+++R
Sbjct: 71 DIVEDTEFSREDVSREFSVEVANLVEGVTKLG------------KIEYKTKEEQQADNVR 118
Query: 219 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 278
MLL M DD RV+LIKLADRLHNMRT+ LP K + A+ET I+ LA RLG+ +K
Sbjct: 119 KMLLAMSDDIRVILIKLADRLHNMRTLKFLPVKKQKEKAKETFDIYAPLAYRLGMSKIKW 178
Query: 279 ELEDLCF 285
ELEDL F
Sbjct: 179 ELEDLAF 185
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 9/133 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K YSI+ KM +K+ I +++D A+R++V ++ CY+ L
Sbjct: 226 GINTDIEGRPKHFYSIYRKMVKKNKTIDQIFDLTAVRILVS---------TMKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ P+ G F DYI PK + YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTIYKPVPGRFKDYIAMPKANMYQSLHTTVIGPQGKPFEIQIRTFEMHKTAEYGIAAH 336
Query: 529 WLYKETGNKLQSI 541
W YKE + + I
Sbjct: 337 WKYKEGADTAEDI 349
>gi|294828236|ref|NP_713265.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|417760220|ref|ZP_12408246.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|417765432|ref|ZP_12413394.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768721|ref|ZP_12416648.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|417776288|ref|ZP_12424129.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|417785522|ref|ZP_12433226.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|418666430|ref|ZP_13227853.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418675521|ref|ZP_13236812.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|418682526|ref|ZP_13243741.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418693250|ref|ZP_13254313.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|418705583|ref|ZP_13266447.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709158|ref|ZP_13269952.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717424|ref|ZP_13277086.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|418723737|ref|ZP_13282571.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|418731431|ref|ZP_13289830.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|421116511|ref|ZP_15576896.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421119978|ref|ZP_15580292.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|421125931|ref|ZP_15586175.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135462|ref|ZP_15595584.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|293386086|gb|AAN50283.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|400325689|gb|EJO77963.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400352369|gb|EJP04565.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356908|gb|EJP13066.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|409943787|gb|EKN89378.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|409949367|gb|EKN99344.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|409951387|gb|EKO05902.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|409962535|gb|EKO26269.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|410011971|gb|EKO70077.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410020359|gb|EKO87162.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347064|gb|EKO97983.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|410436583|gb|EKP85695.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410573896|gb|EKQ36937.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|410577683|gb|EKQ45553.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|410757794|gb|EKR19401.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410764849|gb|EKR35552.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770494|gb|EKR45713.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773963|gb|EKR53984.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|410787021|gb|EKR80756.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|455665880|gb|EMF31366.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455791273|gb|EMF43089.1| putative GTP diphosphokinase [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456825939|gb|EMF74313.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 674
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|109896679|ref|YP_659934.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c]
gi|109698960|gb|ABG38880.1| metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c]
Length = 709
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 116/190 (61%), Gaps = 18/190 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ Q+A A+ AH GQ R +GDPY+TH + ILA + + +T++A +LHDV++
Sbjct: 22 ETQRAFVVAQEAHDGQMRSSGDPYITHPVAVAGILADM-----RLDHETLMAALLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + S+ E+FG+ V +LV GVS+L I+ ++ +I + R ML+
Sbjct: 77 DTHHNKESLSEQFGETVGELVEGVSKLEKIHFSSKQEAQIE------------NFRKMLM 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A RLG+ +K ELED
Sbjct: 125 AMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPIAHRLGIHDIKNELED 184
Query: 283 LCF-AVLQMR 291
L F A+ MR
Sbjct: 185 LGFQAMYPMR 194
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
GM R K LYSI+ KM+ K++ ++V D A RVVV + CY L
Sbjct: 228 GMNALTIGREKHLYSIYRKMKNKELMFNEVMDIYAFRVVVDSADN---------CYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ PI+G F DY+ P+ +GYQSLHT++ GP G +E+QIRT +M + A+ G+AAH
Sbjct: 279 AMHGLYKPIEGRFKDYVAIPRTNGYQSLHTSLIGPHGIPVEIQIRTAEMDKMADIGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W+YK+ + + + +S IE S S + + TDLF
Sbjct: 339 WMYKDDSESSDTTAQVRARKWMQSLIELQQSASSSFEFIENVKTDLF 385
>gi|226945754|ref|YP_002800827.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
gi|226720681|gb|ACO79852.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
Length = 749
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADINGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHSLWRHIPREFDDYIANPKENGYRSLHTAVIGPDGKTLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G L+S SS E I
Sbjct: 366 WRYK--GTDLKSTSSHYEEKI 384
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V +L ++ FG VAKL+ GV R++ I+ L + ++ T
Sbjct: 83 DSLVAAVLYRGVRQKQIALDEVQRRFGQVVAKLIEGVLRMAAISDSLNPRESLVLDAQT- 141
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +LR ML+ MVDD RV LIKLA+R +R + + + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKHADEERRQRVAREVSAIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLAFRYLE 218
>gi|220907977|ref|YP_002483288.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7425]
gi|219864588|gb|ACL44927.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7425]
Length = 748
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 106/191 (55%), Gaps = 18/191 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V +A FA R H GQ R +G+PY+ H + +L L S+ V AG LHDV+
Sbjct: 38 ELVCRAFNFAYRLHQGQRRASGEPYIAHPVAVAGLLRDLGGSAA-----MVAAGFLHDVI 92
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E EFG EV +LV GV++LS IN + +A R M
Sbjct: 93 EDTTVTPEQLEAEFGPEVRQLVEGVTKLSKIN-------------FSKTERQAESFRRMF 139
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+ +KLADRLHNMRT+ LP K R +AQET ++ LA+RLG+W K ELE
Sbjct: 140 LAMAQDIRVIFVKLADRLHNMRTLEYLPEEKRRRIAQETRDVFAPLANRLGIWRFKWELE 199
Query: 282 DLCFAVLQMRA 292
DL F L+ A
Sbjct: 200 DLSFKYLEPEA 210
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R K LYSI+ KM R+ H++YD A+RV+V K+ CY +L IVH
Sbjct: 250 LSGRPKHLYSIYQKMERQQKEFHEIYDIAAIRVIVETKDE---------CYRVLAIVHDC 300
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ F DYI PKP+ YQSLHT V G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 301 FKPVPNRFKDYIGLPKPNRYQSLHTVVIDQGGRPLEVQIRTMEMHRVAEYGIAAHWKYKE 360
Query: 534 TGNKL-QSISSMDE 546
G+ L Q +++ DE
Sbjct: 361 VGHSLGQHLTTADE 374
>gi|307243827|ref|ZP_07525958.1| GTP diphosphokinase [Peptostreptococcus stomatis DSM 17678]
gi|306492830|gb|EFM64852.1| GTP diphosphokinase [Peptostreptococcus stomatis DSM 17678]
Length = 741
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 109/187 (58%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V +A AK AH QFRK+G+PY+ H + ILA + + +DT+ G+LHDVV
Sbjct: 23 DKVVRAYNLAKEAHKDQFRKSGEPYIIHPVAVANILADM-----ELDIDTICGGLLHDVV 77
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D IEE FG +VA LV GV++L I + T +A++LR M
Sbjct: 78 EDTDFEEADIEEMFGKDVAALVDGVTKLGKIKYM------------TKEESQASNLRKMF 125
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKL+DRLHNMRT+ + K + AQETL I+ +A RLG+ +K ELE
Sbjct: 126 MAMAKDMRVMLIKLSDRLHNMRTLEYMDSNKVKYKAQETLDIYAGIAHRLGISTIKWELE 185
Query: 282 DLCFAVL 288
DL F L
Sbjct: 186 DLAFRFL 192
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 84/137 (61%), Gaps = 13/137 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG-DKNGTLHGPAIQCCYSLL 467
G+E + R K YSIF KM++K+ ++YD A+RV+V D++ CY++L
Sbjct: 230 GVECDVYGRPKHFYSIFKKMKKKNKSFDEIYDLTAVRVLVDTDRD----------CYAVL 279
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
VH LW PI G F DYI PKP+ YQSLHT V G DG +E+QIRT +MH AE G+AA
Sbjct: 280 GEVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGSDGEPVEIQIRTYEMHNVAEFGIAA 339
Query: 528 HWLYKE--TGNKLQSIS 542
HW YKE T N L +
Sbjct: 340 HWKYKEGVTDNSLSDVD 356
>gi|421130113|ref|ZP_15590310.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
gi|410358572|gb|EKP05728.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
Length = 674
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|375105841|ref|ZP_09752102.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
gi|374666572|gb|EHR71357.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
Length = 741
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KM+ K + +V+D RALRV+V D + CY+ L
Sbjct: 242 GIGADVQGRPKHIYSIWKKMQGKRLHFEQVFDLRALRVIVAD---------VPACYAALA 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH+ + P+DGEFDDYI PK +GYQSLHT V DG +E+QIRT+ MH++AEHG+AAH
Sbjct: 293 IVHQRYRPVDGEFDDYIARPKANGYQSLHTVVLAEDGREVEIQIRTRAMHDHAEHGVAAH 352
Query: 529 WLYKETGNK 537
W YKE G K
Sbjct: 353 WAYKEAGTK 361
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 91 VDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD 150
V + G + + +A FA+ GQ TG+ H R+L + + RA
Sbjct: 16 VRIAGVDDGGADALSRAREFARPLLIGQVLDTGEEAFAHAEGVDRVLQEIGAAPSMRAAA 75
Query: 151 TVV-AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+V AG D+ + + FGD A LVA +L + Q R ++ Q
Sbjct: 76 YLVYAGDFLQKPDEV------VAKAFGDSYAHLVAYTRKLVQV-QRAARQAQVGAEQRA- 127
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
E+ +R MLL D RVVL++LA RL +R A A A+A E+ ++ LA+
Sbjct: 128 --EQTERVRKMLLAFSRDLRVVLLRLASRLQTLRWFAATKAACPPALAWESQQVFAPLAN 185
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+W +K E+EDL F LQ
Sbjct: 186 RLGIWQIKWEMEDLAFRFLQ 205
>gi|410996620|gb|AFV98085.1| (p)ppGpp synthetase I SpoT/RelA [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 719
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q A+ F+K+AHH QFRK+G+PY+ H + I+A + +G A+ V+A +LHDVV+D
Sbjct: 32 IQNALTFSKQAHHNQFRKSGEPYIVHPVLVASIVANM---TGDEAM--VIAALLHDVVED 86
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ I ++GD+VA LV G++++ I R + I N A R ML+
Sbjct: 87 THITIEEISRDYGDDVAHLVEGLTKIDTI----RDAQLIPSNSDEKLVVSALSFRKMLIA 142
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
++D RV+++KL DRLHNM T+ AL PAK +A+ETL+++ +ASRLG+ LK LEDL
Sbjct: 143 SIEDVRVLVVKLCDRLHNMLTLGALAPAKQHRIAEETLVVYSPIASRLGISFLKNLLEDL 202
Query: 284 CFAVL 288
F L
Sbjct: 203 SFQYL 207
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 88/150 (58%), Gaps = 19/150 (12%)
Query: 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 475
SR+K YSI+ KM+RK + I ++ D A+R++V CY +L +VH +
Sbjct: 255 SRVKHHYSIYLKMQRKGISIDEILDLLAIRILVKKPID---------CYRVLGLVHLNFQ 305
Query: 476 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL-EVQIRTQKMHEYAEHGLAAHWLYKET 534
P+ F DYI PK +GYQ+LHT+V D +A+ EVQIRT +MH+ AE G+AAHW YK
Sbjct: 306 PLSSRFKDYISIPKENGYQTLHTSV--FDSTAIFEVQIRTYEMHKTAELGVAAHWKYKSG 363
Query: 535 GNK------LQSISSMDESDIEASSSLSKD 558
GN L ++ +ES +EA L K+
Sbjct: 364 GNNPISLDWLHNLQYQNES-VEAFYELIKN 392
>gi|59710711|ref|YP_203487.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
ES114]
gi|59478812|gb|AAW84599.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
ES114]
Length = 707
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + K T++A +LHDV+
Sbjct: 21 EALRRSYLVAKEAHEGQTRSSGEPYIIHPVAVARILAEM-----KLDHKTLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E+FGD VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTAVSKEELAEQFGDTVAELVDGVSKL---DKLKFRDKK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L++I++KM+ K+ H + D A RV+ + + CY L
Sbjct: 228 GITGRVIGREKNLFAIYNKMKNKEQRFHTIMDIYAFRVITDN---------VDTCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH ++ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A G+AAH
Sbjct: 279 QVHSIYKPRPGRIKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAH 338
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 339 WSYKEGDN 346
>gi|386074939|ref|YP_005989257.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
gi|353458729|gb|AER03274.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
Length = 674
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPAPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPEGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|359796681|ref|ZP_09299276.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter arsenitoxydans SY8]
gi|359365428|gb|EHK67130.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter arsenitoxydans SY8]
Length = 764
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K V+ + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDVNALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+ I+ KM + V D RVVV + CY L
Sbjct: 280 GIEAEVSGREKTLFGIYRKMVDQKKSFSDVLDIYGFRVVVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|347548906|ref|YP_004855234.1| putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346981977|emb|CBW85962.1| Putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 738
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 106/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRISNETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|240948210|ref|ZP_04752604.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus minor NM305]
gi|240297450|gb|EER47976.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus minor NM305]
Length = 593
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 122/216 (56%), Gaps = 25/216 (11%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
+D + T P E V++A A+ AH GQ R +G+PY+TH + I+A + K
Sbjct: 32 LDRIIQTYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVAGIIAEM-----KL 86
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 207
+ V+A +LHDV++D + + EFG VA++V GVS+L ++L R R+
Sbjct: 87 DHEAVMAALLHDVIEDTPYTEEQLAAEFGSNVAEIVQGVSKL---DKLKFRTRQ------ 137
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
+ + R M+L M D RVVLIKLADR HNMRT+ AL P K +A+ETL I+ L
Sbjct: 138 ---EAQVENFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRMRIAKETLEIYSPL 194
Query: 268 ASRLGLWALKAELEDLCFA--------VLQMRADLA 295
A RLG+ LK ELEDLCF VL+M D+A
Sbjct: 195 AHRLGITHLKNELEDLCFKAMYPHRYNVLRMAIDMA 230
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ K+R++D + D A VVV + + CY L
Sbjct: 253 GIKARIYGREKHLYSLYHKLRQRDQRFRSILDIYAFCVVVEN---------VDNCYRALG 303
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P + DYI PK +GYQSLHT++ G G +EV+IRT++M + AE G+AA
Sbjct: 304 QVHALYKPRPYQVRDYIAVPKTNGYQSLHTSMIGHKGLPIEVKIRTEEMDQMAELGVAAF 363
Query: 529 WLYKETGNKLQSISSMD----ESDIEASSSLSKDTDDHNPLDTDLF 570
W Y + K S+ +S IE S + + +DLF
Sbjct: 364 WRYTDEPLKTTSVQQKAQKWLQSIIELQQSAGNSEEFIENVKSDLF 409
>gi|50365094|ref|YP_053519.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Mesoplasma florum L1]
gi|50363650|gb|AAT75635.1| guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase [Mesoplasma
florum L1]
Length = 765
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A FA++ H Q RK GDPY+ H + T LA L + T+ AG+LHDVV+
Sbjct: 45 KIKEAYLFAEKMHSEQKRKNGDPYIYHPLSTAYYLAQL-----QMGPKTIKAGLLHDVVE 99
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + IEE+FG E+A LV V+++SY + R + + LR + +
Sbjct: 100 DTPVKIEEIEEKFGKEIASLVESVTKVSYFAEENREQIK------------SEYLRKLYI 147
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV++IK+ADRLHNM TI LP K R VA+ETL I+ ++A R+G+ K++LED
Sbjct: 148 SMAKDIRVIIIKIADRLHNMLTIENLPEEKQRVVAKETLTIYAAIAHRIGMKNAKSKLED 207
Query: 283 LCFAVLQ 289
+ F VL
Sbjct: 208 MAFKVLN 214
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ + R K++YSI+ KM +++D A+R++ + CY +L +H
Sbjct: 256 IDIFGREKTIYSIYRKMNVNGKQFEELHDLVAIRII---------AKSTDDCYKILGYLH 306
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ ++P+ G F DYI PK + YQSLHT + G EVQIRTQ+M + AE G AAHW Y
Sbjct: 307 QKYLPLSGRFKDYIATPKNNVYQSLHTTLSNSKGMFFEVQIRTQQMDDVAETGAAAHWRY 366
Query: 532 KE 533
KE
Sbjct: 367 KE 368
>gi|406031541|ref|YP_006730432.1| GTP pyrophosphokinase [Mycobacterium indicus pranii MTCC 9506]
gi|405130088|gb|AFS15343.1| GTP pyrophosphokinase [Mycobacterium indicus pranii MTCC 9506]
Length = 792
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 77 YPKANVSMLQRAFEVADQRHATQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 131
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 132 LLHDTVEDTGYTLDALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 176
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 177 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 236
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 237 SVKWELEDLSFAILH 251
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
++ST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 280 IVSTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 330
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 331 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 390
Query: 521 AEHGLAAHWLYKETGNK 537
E+G+AAHW YKE +
Sbjct: 391 TEYGIAAHWRYKEAKGR 407
>gi|262202238|ref|YP_003273446.1| RelA/SpoT family protein [Gordonia bronchialis DSM 43247]
gi|262085585|gb|ACY21553.1| RelA/SpoT family protein [Gordonia bronchialis DSM 43247]
Length = 790
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q A A+ H GQ RK+GDPY+TH + ILA L + T+VA
Sbjct: 75 YPKADVALLQHAYDVAEERHRGQNRKSGDPYITHPLAVATILADLGMDT-----TTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L +E++FG EVA LV GV++L + LG EA
Sbjct: 130 LLHDTVEDTGYTLDQLEKDFGAEVAHLVDGVTKLDKV---------------ALGSAAEA 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 235 TVKWELEDLSFAILH 249
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 287 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCDE---------VRDCYAAVGV 337
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 338 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 397
Query: 530 LYKETGNKLQSISSMDESDIE 550
YKE+G K + D ++I+
Sbjct: 398 RYKESGYKDRKGRRTDSTEID 418
>gi|218708222|ref|YP_002415843.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio splendidus
LGP32]
gi|218321241|emb|CAV17191.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
splendidus LGP32]
Length = 708
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R TG+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSTGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLPARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMEQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGSR 347
>gi|114776357|ref|ZP_01451402.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114553187|gb|EAU55585.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 711
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N E + A FA AH GQ R +GDPY+TH + ILA L +V+ +
Sbjct: 16 PKANLELINCAYVFAAHAHAGQVRSSGDPYITHPLAVAGILASLGMDEA-----SVITAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD V+D L IEE FG +VA+LV GV+++ I+ N ++ H++A +
Sbjct: 71 LHDTVEDTGVKLSEIEENFGADVARLVDGVTKIGQIH--------FNSSE----HKQAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M+L D RV+++KLADRLHNMRT+ +P K R + +ETL I+ LA RLG+ +
Sbjct: 119 FRKMILATAKDLRVLIVKLADRLHNMRTLGFVPEHKRRRIGEETLQIYAPLAHRLGMHWI 178
Query: 277 KAELEDLCFAVLQMRADLASMWSPRNRV 304
K E+EDL F+ L+ A A M + R+
Sbjct: 179 KQEMEDLVFSHLEPEAYKALMVEMQGRL 206
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R+K LYSI KM+RK V ++D A RV+V D Q CY L
Sbjct: 228 GLAATVHGRMKHLYSIHEKMQRKHVNFDDIFDLIAFRVIVDDA---------QTCYQALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH L+ P+ G F DYI PKP+GYQSLHTAV GP+ +E+QIRT MH YAE G+A+H
Sbjct: 279 IVHSLYRPVPGRFKDYIALPKPNGYQSLHTAVIGPENFRIEIQIRTHLMHSYAEDGVASH 338
Query: 529 WLYKE 533
W YKE
Sbjct: 339 WAYKE 343
>gi|357634035|ref|ZP_09131913.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio sp. FW1012B]
gi|357582589|gb|EHJ47922.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio sp. FW1012B]
Length = 738
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA F+ AH GQ R +G+PYL+H + ILA + + +V AG+LHD V+D
Sbjct: 23 ITKAYVFSAAAHAGQVRLSGEPYLSHPLEAAGILADMRLDAA-----SVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ IEE FGDEVA +V GV+++S I + +A ++R M+L
Sbjct: 78 TKATVDEIEELFGDEVADIVDGVTKISLIPFESKEE------------AQAENIRKMILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RVVL+KLADRLHNMRT+ P K +AQET+ I+ LA+RLGL +K ELEDL
Sbjct: 126 MANDIRVVLVKLADRLHNMRTLEFQKPVKRALIAQETMDIYAPLANRLGLHRIKTELEDL 185
Query: 284 CFAVLQ 289
F L+
Sbjct: 186 SFKYLK 191
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K L+S+F+KMR + + I +V+D A RV+V I+ CYS+L +VH +W P
Sbjct: 236 RRKHLWSVFNKMRVQGLTIDQVHDLVAFRVLV---------ETIRECYSVLGLVHSIWKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ G F DYI PK + YQSLHT V GPDG +E+QIRT +M+ AE G+AAHW YKE
Sbjct: 287 VPGRFKDYISMPKANMYQSLHTTVVGPDGERIEIQIRTVEMNRLAEEGVAAHWKYKE 343
>gi|261250547|ref|ZP_05943122.1| GTP pyrophosphokinase (p)ppGpp synthetase
II/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417953407|ref|ZP_12596453.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260939116|gb|EEX95103.1| GTP pyrophosphokinase (p)ppGpp synthetase
II/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342817281|gb|EGU52165.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 708
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+L+SI++KM+ K+ H + D A RVVV D + CY +L
Sbjct: 228 GLKARVFGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDDAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQS+HT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSIHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK TG +
Sbjct: 339 WSYKGTGER 347
>gi|404400825|ref|ZP_10992409.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fuscovaginae UPB0736]
Length = 746
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 18/164 (10%)
Query: 386 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 445
S V C+ LE ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+R
Sbjct: 238 FISEVMCQ--LENELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVR 290
Query: 446 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 505
V+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G
Sbjct: 291 VLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEG 341
Query: 506 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 KVLEVQIRTHAMHEEAELGVCAHWKYK--GTDVKSGSNHYEEKI 383
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V L ++ ++FG VAKL+ GV R++ I+ L + +Q
Sbjct: 82 DSLVAAVLYRGVRQGQVQLQAVSQKFGPVVAKLIDGVQRMAAISASLSPRQ----SQVMG 137
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 SQVQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAH 197
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 RLGIGHIKWELEDLSFRYLE 217
>gi|160872046|ref|ZP_02062178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
gi|159120845|gb|EDP46183.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
Length = 736
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 9/121 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R+K +YSI+ KM++K + ++YD A+R++V ++ CY +L I+H LW P
Sbjct: 255 RVKHIYSIYKKMQQKKLKFEELYDLNAIRILVS---------TVRDCYHVLSIIHNLWSP 305
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G+FDDYI PKP+GY+S+HTAV GP LE+QIRTQ+MH+ +EHGLAAHW YKET
Sbjct: 306 IAGQFDDYISTPKPNGYRSIHTAVIGPHKKVLEIQIRTQQMHQESEHGLAAHWQYKETAQ 365
Query: 537 K 537
+
Sbjct: 366 Q 366
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
+T+ A +++ V+ A L ++ E G VAK++ G +++ I RI L
Sbjct: 78 ETIAASLIYSCVNYAELCLDTVREHLGPNVAKIIEGAKQMNAI--------RIASPAANL 129
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ ++R MLL MV D RVVLIKLA+R MRT+ L ++A A+ETL I+ SLA+
Sbjct: 130 HQTQLENIRKMLLAMVKDMRVVLIKLAERTATMRTLDMLDTKTSQAYARETLDIYASLAN 189
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ L+ ELEDL L+
Sbjct: 190 RLGVGQLQWELEDLSLHYLE 209
>gi|45656898|ref|YP_000984.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|421087294|ref|ZP_15548135.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
gi|421102246|ref|ZP_15562852.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600135|gb|AAS69621.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|410367953|gb|EKP23335.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430403|gb|EKP74773.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
Length = 674
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|398338439|ref|ZP_10523142.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418676031|ref|ZP_13237317.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688085|ref|ZP_13249242.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695002|ref|ZP_13256028.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|418739479|ref|ZP_13295863.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089191|ref|ZP_15550005.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|421106960|ref|ZP_15567521.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|400323796|gb|EJO71644.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957161|gb|EKO16076.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|410002142|gb|EKO52665.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|410007974|gb|EKO61652.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|410737509|gb|EKQ82250.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410753279|gb|EKR10248.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 674
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|288574632|ref|ZP_06392989.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570373|gb|EFC91930.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 753
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI KM RK + + ++YD A+R++V D I CY++L
Sbjct: 262 GIDALIKGRAKHFYSILEKMNRKGLSVDQLYDLLAMRIIVDD---------ITTCYTVLG 312
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 313 IVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVVGPSGEPLEVQIRTWEMHWLAEYGVAAH 372
Query: 529 WLYKETGNKLQSISS 543
W YKE +K+ + +
Sbjct: 373 WRYKEGADKMDDLDA 387
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 17/183 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++ +A+ FA AH Q R TG+PY+ HC++ ILA + K V T+ A +LHD ++
Sbjct: 56 ELGEALIFAAEAHGEQKRGTGEPYIIHCVYVASILADM-----KMDVKTMEAALLHDCIE 110
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + ++ E FG+EV LV GV++L + + +A +LR M L
Sbjct: 111 DTVVTKEALAERFGEEVGVLVDGVTKLG------------KLPFKSFEDYQAENLRKMFL 158
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RVVLIKLADR HNMRT+ AL K + +A+ETL I+ LA RLG++ +K LED
Sbjct: 159 VMAKDIRVVLIKLADRTHNMRTLGALRKDKQQRIAKETLEIYAPLAHRLGIYQVKRTLED 218
Query: 283 LCF 285
L F
Sbjct: 219 LAF 221
>gi|188588536|ref|YP_001920360.1| GTP pyrophosphokinase [Clostridium botulinum E3 str. Alaska E43]
gi|188498817|gb|ACD51953.1| putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Clostridium botulinum E3 str.
Alaska E43]
Length = 728
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA+ AH Q R++G+PY+ H I ILA L + T+ AG+LHDV+
Sbjct: 19 EMIKKAYYFAEDAHKEQKRESGEPYIIHPIDVAEILAELGMDTS-----TIAAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S S++ F +E+A LV GV++L + T ++A+++R ML
Sbjct: 74 EDTTCSYESMKTIFNEEIANLVNGVTKLG------------KIQYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMAKDIRVIIIKLADRLHNMRTLKFMPKGKQKLKAKETLDIYAPLAHRLGMSKIKWELE 181
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 182 DLSFRYLH 189
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ I +++D A+R++V +++ CY +L
Sbjct: 226 GIDSDIEGRPKHFYSIYKKMINKNKSIEQIFDLTAIRILVN---------SVKDCYGVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IVHTIYKPIPGRFKDYIAMPKPNMYQSLHTTVIGNQGKTFEIQIRTFEMHKTAEYGIAAH 336
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G+K + + D
Sbjct: 337 WKYKE-GDKNEEDKAKD 352
>gi|411011481|ref|ZP_11387810.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Aeromonas
aquariorum AAK1]
gi|423198893|ref|ZP_17185476.1| bifunctional (p)ppGpp synthase/hydrolase SpoT [Aeromonas hydrophila
SSU]
gi|404629741|gb|EKB26469.1| bifunctional (p)ppGpp synthase/hydrolase SpoT [Aeromonas hydrophila
SSU]
Length = 705
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 141/245 (57%), Gaps = 18/245 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLRQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E FGD VA+LV+GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTPVTKADLAELFGDAVAELVSGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
+L F A+ MR+ + R R I +I S R A + + ++++ S+
Sbjct: 184 ELGFEALYPMRSRVLRESVRRARGNRREIIDSIQSEIEGRLREAGIESQVSGREKNLFSI 243
Query: 341 KDLLE 345
+ +E
Sbjct: 244 YNKME 248
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIESQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVRVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|343501549|ref|ZP_08739423.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio tubiashii
ATCC 19109]
gi|418481555|ref|ZP_13050590.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342817594|gb|EGU52472.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio tubiashii
ATCC 19109]
gi|384570812|gb|EIF01363.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 705
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+L+SI++KM+ K+ H + D A RVVV + + CY +L
Sbjct: 228 GLKARVFGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDNAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQS+HT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSIHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G +
Sbjct: 339 WSYKGNGER 347
>gi|86146550|ref|ZP_01064872.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
sp. MED222]
gi|85835607|gb|EAQ53743.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Vibrio
sp. MED222]
Length = 708
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R TG+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSTGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLPARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMEQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G++
Sbjct: 339 WSYKGNGSR 347
>gi|452850965|ref|YP_007492649.1| GTP pyrophosphokinase [Desulfovibrio piezophilus]
gi|451894619|emb|CCH47498.1| GTP pyrophosphokinase [Desulfovibrio piezophilus]
Length = 724
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 115/186 (61%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ +AH G R++G+PY++H ++ +LA + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSAQAHDGVVRRSGEPYISHPMNVANLLADMQLDEA-----TVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ IEE FG +VA +V GV+++S ++ + ++A ++R ++L
Sbjct: 78 TDTTVDEIEELFGSDVADIVDGVTKIS------------KMDFESKAVQQAENIRKLILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHNMRT+ + P K R +AQET I+ LA+RLGL +K ELEDL
Sbjct: 126 MAEDIRVLMVKLADRLHNMRTLQYMKPVKQRLIAQETQDIYAPLANRLGLHRVKTELEDL 185
Query: 284 CFAVLQ 289
C L+
Sbjct: 186 CLRYLK 191
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +SI KM ++ + ++YD A R++V +++ CYS+L ++H W P
Sbjct: 236 RTKHFHSIHVKMEQQGLTFDEIYDLIAFRIIVD---------SLKDCYSVLGLIHAAWRP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI PK + YQSLH+ V GPDG +EVQIRT +M++ AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISIPKANMYQSLHSTVIGPDGERIEVQIRTDEMNQIAEYGVAAHWQYKEVGK 346
Query: 537 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 578
++ + D E + L + D L +D + SSL++
Sbjct: 347 GIKKGKTAGTRDAERYTWLKQIMDWQREL-SDPREFMSSLRL 387
>gi|284991594|ref|YP_003410148.1| (p)ppGpp synthetase I SpoT/RelA [Geodermatophilus obscurus DSM
43160]
gi|284064839|gb|ADB75777.1| (p)ppGpp synthetase I, SpoT/RelA [Geodermatophilus obscurus DSM
43160]
Length = 861
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 109/185 (58%), Gaps = 19/185 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ AH Q RK+GDPY+TH + ILA L T+VA +LHD V+D
Sbjct: 150 LQRAYDVAEAAHATQKRKSGDPYITHPLAVATILAGL-----GMDTTTLVAALLHDTVED 204
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++L SI E FG EVA LV GV+++ R+ + +A +R M++
Sbjct: 205 TGQTLESIREAFGPEVAHLVDGVTKID----------RVKLGDAA----QAETIRKMIVA 250
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL I LA RLG+ +K ELEDL
Sbjct: 251 MARDPRVLVIKLADRLHNMRTLRFLPPEKQERKARETLEILAPLAHRLGMNTIKWELEDL 310
Query: 284 CFAVL 288
FA L
Sbjct: 311 AFATL 315
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K YSI+ KM + ++D +R++V +++ CY+ L
Sbjct: 353 GIPAVVTGRPKHYYSIYQKMIVRGRDFTDIWDLVGIRILVD---------SVRDCYAALG 403
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F D++ PK + YQSLHT V GP G +E+QIRT MH AE+G+AAH
Sbjct: 404 IMHAHWQPVPGRFKDFVAMPKFNMYQSLHTTVIGPQGKPVELQIRTHDMHRTAEYGIAAH 463
Query: 529 WLYKE 533
W YKE
Sbjct: 464 WKYKE 468
>gi|456966424|gb|EMG08042.1| RelA/SpoT domain protein, partial [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 385
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
>gi|449480518|ref|XP_004155918.1| PREDICTED: uncharacterized LOC101204461 [Cucumis sativus]
Length = 734
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T AML+ + G + V AG
Sbjct: 221 HKIFLDEFVIKAFYEAEKAHRGQMRASGDPYLQHCVET----AMLLATIGANST-VVAAG 275
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I G VA LV VS+LS++++L R + N EA+
Sbjct: 276 LLHDALDDSFMCYDYILGSVGAGVADLVEEVSQLSHLSKLARENNTANKTV------EAD 329
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VL+KLADRLHNM T+ ALP K A+ET+ I+ LA+RLG+ +
Sbjct: 330 RLHTMFLAMADT-RAVLVKLADRLHNMMTLDALPLTKRLRFAKETMEIFVPLANRLGILS 388
Query: 276 LKAELEDLCFAVLQ 289
K +LE+LCF L
Sbjct: 389 WKEQLENLCFKHLH 402
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI+ KM RK + + +++D +R++V ++ C L IVH+L
Sbjct: 443 LSGRNKSLYSIYLKMLRKKLTMDEIHDIHGIRLIVKNEED---------CQKALRIVHQL 493
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G DYI PK +GY+SLHT V G D + LEVQIRT++MH AE G+AAHW YKE
Sbjct: 494 WSEVPGRCKDYISRPKFNGYRSLHTVVVGEDMAHLEVQIRTKEMHLQAEFGIAAHWRYKE 553
>gi|379755311|ref|YP_005343983.1| GTP pyrophosphokinase [Mycobacterium intracellulare MOTT-02]
gi|379762847|ref|YP_005349244.1| GTP pyrophosphokinase [Mycobacterium intracellulare MOTT-64]
gi|387876689|ref|YP_006306993.1| GTP pyrophosphokinase [Mycobacterium sp. MOTT36Y]
gi|443306463|ref|ZP_21036251.1| GTP pyrophosphokinase [Mycobacterium sp. H4Y]
gi|378805527|gb|AFC49662.1| GTP pyrophosphokinase [Mycobacterium intracellulare MOTT-02]
gi|378810789|gb|AFC54923.1| GTP pyrophosphokinase [Mycobacterium intracellulare MOTT-64]
gi|386790147|gb|AFJ36266.1| GTP pyrophosphokinase [Mycobacterium sp. MOTT36Y]
gi|442768027|gb|ELR86021.1| GTP pyrophosphokinase [Mycobacterium sp. H4Y]
Length = 792
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 77 YPKANVSMLQRAFEVADQRHATQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 131
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 132 LLHDTVEDTGYTLDALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 176
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 177 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 236
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 237 SVKWELEDLSFAILH 251
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
++ST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 280 IVSTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 330
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 331 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 390
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 391 AEYGIAAHWRYKEAKGR 407
>gi|386394260|ref|ZP_10079041.1| (p)ppGpp synthetase, RelA/SpoT family [Desulfovibrio sp. U5L]
gi|385735138|gb|EIG55336.1| (p)ppGpp synthetase, RelA/SpoT family [Desulfovibrio sp. U5L]
Length = 737
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA F+ AH GQ R +G+PYL+H + ILA + + +V AG+LHD V+D
Sbjct: 23 ITKAYVFSAAAHAGQVRLSGEPYLSHPLEAAGILADMRLDAA-----SVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ IEE FGDEVA +V GV+++S I + +A ++R M+L
Sbjct: 78 TKATVDEIEELFGDEVADIVDGVTKISLIPFESKEE------------AQAENIRKMILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RVVL+KLADRLHNMRT+ P K +AQET+ I+ LA+RLGL +K ELEDL
Sbjct: 126 MANDIRVVLVKLADRLHNMRTLEFQKPVKRALIAQETMDIYAPLANRLGLHRIKTELEDL 185
Query: 284 CFAVLQ 289
F L+
Sbjct: 186 SFKYLK 191
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 9/117 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K L+S+F+KMR + + I +V+D A RV+V I+ CY++L +VH +W P
Sbjct: 236 RRKHLWSVFNKMRVQGLTIDQVHDLVAFRVLV---------ETIRECYAVLGLVHSIWKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ G F DYI PK + YQSLHT V GPDG +E+QIRT +M+ AE G+AAHW YKE
Sbjct: 287 VPGRFKDYISMPKANMYQSLHTTVVGPDGERIEIQIRTVEMNRLAEEGVAAHWKYKE 343
>gi|254820460|ref|ZP_05225461.1| GTP pyrophosphokinase [Mycobacterium intracellulare ATCC 13950]
gi|379748008|ref|YP_005338829.1| GTP pyrophosphokinase [Mycobacterium intracellulare ATCC 13950]
gi|378800372|gb|AFC44508.1| GTP pyrophosphokinase [Mycobacterium intracellulare ATCC 13950]
Length = 792
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N +Q+A A + H Q R +GDPY+TH + ILA L T+VA
Sbjct: 77 YPKANVSMLQRAFEVADQRHATQLRHSGDPYITHPLAVATILAEL-----GMDTTTLVAA 131
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 132 LLHDTVEDTGYTLDALSEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 176
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 177 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 236
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 237 SVKWELEDLSFAILH 251
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
++ST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 280 IVSTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 330
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 331 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 390
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 391 AEYGIAAHWRYKEAKGR 407
>gi|449447898|ref|XP_004141703.1| PREDICTED: uncharacterized protein LOC101204461 [Cucumis sativus]
Length = 738
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+ IF DE V KA A++AH GQ R +GDPYL HC+ T AML+ + G + V AG
Sbjct: 221 HKIFLDEFVIKAFYEAEKAHRGQMRASGDPYLQHCVET----AMLLATIGANST-VVAAG 275
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD +DD+ I G VA LV VS+LS++++L R + N EA+
Sbjct: 276 LLHDALDDSFMCYDYILGSVGAGVADLVEEVSQLSHLSKLARENNTANKTV------EAD 329
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
L M L M D R VL+KLADRLHNM T+ ALP K A+ET+ I+ LA+RLG+ +
Sbjct: 330 RLHTMFLAMADT-RAVLVKLADRLHNMMTLDALPLTKRLRFAKETMEIFVPLANRLGILS 388
Query: 276 LKAELEDLCFAVLQ 289
K +LE+LCF L
Sbjct: 389 WKEQLENLCFKHLH 402
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R KSLYSI+ KM RK + + +++D +R++V ++ C L IVH+L
Sbjct: 443 LSGRNKSLYSIYLKMLRKKLTMDEIHDIHGIRLIVKNEED---------CQKALRIVHQL 493
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W + G DYI PK +GY+SLHT V G D + LEVQIRT++MH AE G+AAHW YKE
Sbjct: 494 WSEVPGRCKDYISRPKFNGYRSLHTVVVGEDMAHLEVQIRTKEMHLQAEFGIAAHWRYKE 553
>gi|345023332|ref|ZP_08786945.1| GTP pyrophosphokinase [Ornithinibacillus scapharcae TW25]
Length = 732
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 104/183 (56%), Gaps = 17/183 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A +A++AH GQFRK+G+ Y+ H I IL L K +T+ G LHDVV+D
Sbjct: 30 RAYQYAEKAHEGQFRKSGEAYIIHPIQVAGILVDL-----KMDPETIAGGFLHDVVEDTD 84
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+L IEEEF EVA LV GV++L + + ++A + R M + M
Sbjct: 85 ITLEMIEEEFNKEVAMLVDGVTKLG------------KIKYKSKEAQQAENHRKMFVAMA 132
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+LIKLADRLHNMRT+ LPP K R A ETL I+ LA RLG+ +K ELED
Sbjct: 133 KDIRVILIKLADRLHNMRTLKHLPPEKQRIKANETLEIFAPLAHRLGISTIKWELEDTAL 192
Query: 286 AVL 288
L
Sbjct: 193 RYL 195
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
+E +S R K LYSI+ KM +++ +++YD A+RV+V +I+ CY++L
Sbjct: 233 NIEAEISGRPKHLYSIYQKMVKQNKQFNEIYDLLAVRVLVN---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|87118649|ref|ZP_01074548.1| RelA/SpoT protein [Marinomonas sp. MED121]
gi|86166283|gb|EAQ67549.1| RelA/SpoT protein [Marinomonas sp. MED121]
Length = 747
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 90/136 (66%), Gaps = 11/136 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L R K +YSI+ KM+RK++G +VYD RA+R++V DK CY +L VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILV-DKT--------MDCYGVLGTVHTL 311
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI NPK +GYQSLHTAV GP+G A+E+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WKPIPHEFDDYISNPKSNGYQSLHTAVVGPNGRAVEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 534 TGNKLQSISSMDESDI 549
G L S SS E +
Sbjct: 371 -GTDLSSNSSSYEEKL 385
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 137 LAMLIPSSGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQL 195
L M+ SG RA D+++A L+ VV + ++ + + FG +VA ++ GV R+ +++
Sbjct: 68 LEMVEILSGFRADQDSLLAAALYRVVREDQLAIEKVADMFGRKVASIIEGVIRMGEVSKN 127
Query: 196 LRRHRRINVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253
L + V LG+ E LR ML+ ++DD RVVL+KLA+R ++ A+
Sbjct: 128 LSADTKAEV----LGNSENQLESLRKMLVSIIDDVRVVLVKLAERACAIKEAKHQDGARR 183
Query: 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ-MRADLASMWSPRNRVGYSRRITT 312
AVA E ++ LA RLG+ +K ELEDL F L + + W R+ I
Sbjct: 184 EAVALEVQSVYAPLAHRLGIGYIKWELEDLSFRYLYPVEYKRVAKWLDEKRIARQEYIDE 243
Query: 313 IVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 357
++S+ ++ + + +H+ S+ + + + FD + D R
Sbjct: 244 VISTLDIELQKINIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVR 289
>gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans]
gi|133738910|emb|CAL61957.1| GTP pyrophosphokinase [Herminiimonas arsenicoxydans]
Length = 761
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 17/162 (10%)
Query: 393 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 444
E+ +E+E + S G++ + R K ++SI+SK+R K++ +YD RA
Sbjct: 231 EKRVEREAFVENSIKRLKSEMAAAGIKAEVFGRPKHIFSIWSKLRGKEIEFSDLYDVRAF 290
Query: 445 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 504
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 291 RVIVDD---------VKTCYTVLGIVHNIWTPIPEEFDDYISRPKANGYQSLHTIVIAED 341
Query: 505 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 546
G LEVQ+RT MH++AE+G+AAHW YKE+G + DE
Sbjct: 342 GRPLEVQVRTNDMHDFAEYGVAAHWRYKESGGSNFAGQKYDE 383
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ--LLRRHRRINVNQG 207
DT +A +L ++ A + IEE FG +V+ LVAGV +L +++ + N N
Sbjct: 75 DTRIAALLFELEMIAPAAAEKIEERFGKDVSDLVAGVRQLMRLHEATFTQHEAARNKNAA 134
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLIWC 265
+ LR MLL M D RVVL++L R+ +R L ++R A+ET ++
Sbjct: 135 QEAAAQLEVLRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKLVNERSRQYARETFDLYA 194
Query: 266 SLASRLGLWALKAELEDLCFAVLQMRA 292
LA+RLG+W LK ELEDL F L+ A
Sbjct: 195 PLANRLGIWQLKWELEDLSFRFLEPEA 221
>gi|406926930|gb|EKD63047.1| hypothetical protein ACD_51C00357G0003 [uncultured bacterium]
Length = 640
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 16/193 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N + +++A FA AH G RK+G+PY+ H + T ILA + K ++A +
Sbjct: 16 PDINSDAIKEAYKFADDAHKGVLRKSGEPYIIHPVGTAMILAEM-----KADKQMIIAAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHD V+D +L I+ FG EV+ LV G++++S + L Q T G + +
Sbjct: 71 LHDTVEDTKVTLAEIKRRFGSEVSLLVDGLTKISTVRYSL---------QSTRG--QISS 119
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR + L M D RVVLIKLADRLHNMRT+ + P K + +A+ETL I+ +A LG W +
Sbjct: 120 LRKIFLKMSKDLRVVLIKLADRLHNMRTLEFVVPEKRKRIAKETLEIYVPMARLLGAWDV 179
Query: 277 KAELEDLCFAVLQ 289
+ELEDLCF LQ
Sbjct: 180 MSELEDLCFKHLQ 192
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 408 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467
P ++ + K LY ++ K + D +++V+V P CY L
Sbjct: 227 PEVDAEIKGEEKHLYHVYKAFTEKRGLFDVMTDCYSIKVIV---------PDTMDCYKAL 277
Query: 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 527
+VH LW P +F DYI PK +GY+ LHT V GP G +EV I+T M+E A +G+AA
Sbjct: 278 GVVHGLWQPRRADFRDYIAVPKANGYKGLHTMVFGPYGKTVEVHIKTLDMYEDAHYGIAA 337
Query: 528 HWLYKETGNKLQSISSMDESDIEASSSLSKDTDDH--NPLDTDLFQ 571
W + K +S+S S ++ +S +D L D+F+
Sbjct: 338 RWYRQRMKWKSESVSYSWMSQVKDLRRMSGGVNDKFLEDLKGDVFE 383
>gi|385676940|ref|ZP_10050868.1| GTP pyrophosphokinase [Amycolatopsis sp. ATCC 39116]
Length = 776
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 74 LQRAYDVAEELHRHQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 128
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + +FGD+VA+LV GV++L V GT EA +R M++
Sbjct: 129 TGYSVEQLTADFGDKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 174
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 175 MARDPRVLVIKLADRLHNMRTMRFLPPEKQVRKAKETLEVLAPLAHRLGMATVKWELEDL 234
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 235 AFAILQ 240
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 404 TSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
T + G +T + R K YSI KM + + ++D +R++V D ++
Sbjct: 270 TGALGGSRITAKVEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VR 320
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY+ + +VH LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH A
Sbjct: 321 DCYAAMGVVHALWQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTYEMHHTA 380
Query: 522 EHGLAAHWLYKET 534
E+G+AAHW YKET
Sbjct: 381 EYGIAAHWRYKET 393
>gi|257465282|ref|ZP_05629653.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus minor 202]
gi|257450942|gb|EEV24985.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Actinobacillus minor 202]
Length = 568
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 122/216 (56%), Gaps = 25/216 (11%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
+D + T P E V++A A+ AH GQ R +G+PY+TH + I+A + K
Sbjct: 7 LDRIIQTYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVAGIIAEM-----KL 61
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 207
+ V+A +LHDV++D + + EFG VA++V GVS+L ++L R R+
Sbjct: 62 DHEAVMAALLHDVIEDTPYTEEQLAAEFGSNVAEIVQGVSKL---DKLKFRTRQ------ 112
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
+ + R M+L M D RVVLIKLADR HNMRT+ AL P K +A+ETL I+ L
Sbjct: 113 ---EAQVENFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRMRIAKETLEIYSPL 169
Query: 268 ASRLGLWALKAELEDLCFA--------VLQMRADLA 295
A RLG+ LK ELEDLCF VL+M D+A
Sbjct: 170 AHRLGITHLKNELEDLCFKAMYPHRYNVLRMAIDMA 205
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ K+R++D + D A VVV + + CY L
Sbjct: 228 GIKARIYGREKHLYSLYHKLRQRDQRFRSILDIYAFCVVVEN---------VDNCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P + DYI PK +GYQSLHT++ G G +EV+IRT++M + AE G+AA
Sbjct: 279 QVHALYKPRPYQVRDYIAVPKTNGYQSLHTSMIGHKGLPIEVKIRTEEMDQMAELGVAAF 338
Query: 529 WLYKETGNKLQSISSMD----ESDIEASSSLSKDTDDHNPLDTDLF 570
W Y + K ++ +S IE S + + +DLF
Sbjct: 339 WRYTDEPLKATTVQQKAQKWLQSIIELQQSAGNSEEFIENVKSDLF 384
>gi|376294946|ref|YP_005166176.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio desulfuricans ND132]
gi|323457507|gb|EGB13372.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio desulfuricans
ND132]
Length = 737
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 120/196 (61%), Gaps = 19/196 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A F+ +AH G R++G+PY++H ++ +LA + TV AG+LHD V+D
Sbjct: 23 IQRAYVFSAQAHDGVVRRSGEPYISHPMNVAYLLADMQLDEA-----TVAAGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ IEE FG +VA +V GV+++S R++ + ++A ++R ++L
Sbjct: 78 TDTTVDEIEELFGSDVADIVDGVTKIS----------RMDFESKAV--QQAENIRKLILA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHNMRT+ + P K R +AQET I+ LA+RLGL +K ELEDL
Sbjct: 126 MAEDIRVLMVKLADRLHNMRTLEYMKPVKQRLIAQETQDIYAPLANRLGLHRVKTELEDL 185
Query: 284 CFAVLQMRADLASMWS 299
C L R D+ + S
Sbjct: 186 CLRYL--RPDVYAQLS 199
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K L+SI KM ++ + ++YD A RV+VG +++ CY++L ++H W P
Sbjct: 236 RTKHLHSIQVKMEQQGLTFDEIYDLIAFRVIVG---------SLKDCYAVLGLIHAAWRP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI PK + YQSLHT V GPDG +E+QIRT++MH AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISIPKANMYQSLHTTVMGPDGERIEIQIRTEEMHRIAEYGVAAHWQYKEVGK 346
Query: 537 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 578
+ + D E + L + D L +D + SSL++
Sbjct: 347 GAKKGKTAGRRDAERYTWLKQIMDWQREL-SDPREFMSSLRL 387
>gi|187932883|ref|YP_001885230.1| GTP pyrophosphokinase [Clostridium botulinum B str. Eklund 17B]
gi|187721036|gb|ACD22257.1| RelA/SpoT family protein [Clostridium botulinum B str. Eklund 17B]
Length = 728
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA+ AH Q R++G+PY+ H I ILA L + T+ AG+LHDV+
Sbjct: 19 EMIKKAYFFAEDAHKEQKRESGEPYIIHPIDVAEILAELGMDTS-----TIAAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S S++ F +E+A LV GV++L + T ++A+++R ML
Sbjct: 74 EDTTCSYESMKTIFNEEIANLVNGVTKLG------------KIQYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMAKDIRVIIIKLADRLHNMRTLKFMPKGKQKLKAKETLDIYAPLAHRLGMSKIKWELE 181
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 182 DLSFRYLH 189
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ I +++D A+R++V +++ CY +L
Sbjct: 226 GIDSDIEGRPKHFYSIYKKMINKNKSIEQIFDLTAIRILVN---------SVKDCYGVLG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLHT V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IVHTIYKPIPGRFKDYIAMPKPNMYQSLHTTVIGNQGKTFEIQIRTFEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|428219731|ref|YP_007104196.1| (p)ppGpp synthetase I SpoT/RelA [Pseudanabaena sp. PCC 7367]
gi|427991513|gb|AFY71768.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudanabaena sp. PCC 7367]
Length = 746
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 24/217 (11%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A+ FA H GQ+R +G+PY+ H I IL L G +A+ +VAG LHDVV+D
Sbjct: 45 RALKFACELHEGQYRASGEPYILHPIEVATILRDL--GGGSKAM--IVAGFLHDVVEDTE 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IE EFG E+A LV GV++LS N + R A + R M L M
Sbjct: 101 VTVADIEAEFGAEIAALVEGVTKLSKFNFESKTER------------AAENFRRMFLAMA 148
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ LP K +A+ET+ I+ LA+RLG+ +K ELEDL F
Sbjct: 149 QDIRVIVVKLADRLHNMRTLEHLPAPKQANIARETMEIFAPLANRLGIGQIKWELEDLSF 208
Query: 286 ------AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
A QMR+ + + RNR R+ I+ S
Sbjct: 209 KYIDKDAYQQMRSLVVE--NRRNREERLARVRDILRS 243
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 18/187 (9%)
Query: 393 EEALEKELLISTSYIPGMEVT---LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 449
EE L + I S I + +T +S R K LY I+ KM+ + ++YD A+R++V
Sbjct: 231 EERLARVRDILRSRIEQLGLTNFEISGRPKHLYGIYQKMQVRQKKYEEIYDVSAIRIIVE 290
Query: 450 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 509
+K + CY +L +VH + PI G F DYI PKP+ YQSLHT V GP+G LE
Sbjct: 291 NK---------EACYRVLAVVHDCFRPIPGRFKDYIGLPKPNRYQSLHTVVIGPNGRPLE 341
Query: 510 VQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD------IEASSSLSKDTDDHN 563
VQIRT +MH AE+G+AAHW YKET + Q+ S DE +E L D + +
Sbjct: 342 VQIRTWEMHHIAEYGIAAHWKYKETNSSHQATSQEDEKFTWLRQLVEWQRELKDDQEYID 401
Query: 564 PLDTDLF 570
L +LF
Sbjct: 402 TLKENLF 408
>gi|381165523|ref|ZP_09874753.1| guanosine polyphosphate synthetase/pyrophosphohydrolase
[Saccharomonospora azurea NA-128]
gi|379257428|gb|EHY91354.1| guanosine polyphosphate synthetase/pyrophosphohydrolase
[Saccharomonospora azurea NA-128]
Length = 781
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 79 LQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 133
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + EFG++VA+LV GV++L V GT EA +R M++
Sbjct: 134 TDYSVEQLTNEFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 179
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 180 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 239
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 240 AFAILQ 245
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V + ++ CY+ + +VH L
Sbjct: 287 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVEE---------VRDCYAAMGVVHAL 337
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 338 WQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 397
Query: 534 T 534
T
Sbjct: 398 T 398
>gi|347759003|ref|YP_004866565.1| GTP pyrophosphokinase [Micavibrio aeruginosavorus ARL-13]
gi|347591521|gb|AEP10563.1| GTP pyrophosphokinase rsh [Micavibrio aeruginosavorus ARL-13]
Length = 723
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 22/217 (10%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T P + +++AI +A+ H GQ R +G+PY TH + ILA + K T+V
Sbjct: 13 TYNPDIDPALIERAIEYARVKHDGQVRASGEPYYTHPVEVAAILADM-----KMDPATIV 67
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
ILHD ++D ++ +++ FGD+VA +V GVS+LS I T+ ++
Sbjct: 68 TAILHDTLEDTDATMEELKKLFGDDVANMVNGVSKLSRIEGQ------------TVEGKQ 115
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL-PPAKARAVAQETLLIWCSLASRLG 272
A + R ++L M DD RV+L+KLADRLHNMRTI+ + P K R +A+ETL I+ LA R+G
Sbjct: 116 AENFRKLVLAMSDDIRVLLVKLADRLHNMRTIHHIAKPEKQRRIARETLEIYAPLAERIG 175
Query: 273 LWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRR 309
+ +K ELED F V+ A S NR+ Y R+
Sbjct: 176 IHQIKEELEDRAFGVMNPEA----RESITNRLSYLRQ 208
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+ YSI+ KM+RK+V ++ D A RV+V + ++ CY +L
Sbjct: 229 GINGVVLGREKTRYSIWRKMQRKNVSFEQLSDIMAFRVLVDN---------VEQCYHVLG 279
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H + + G F DYI PKP+GY+S+HT V GP+ +EVQIRT+ M+E A+ G+AAH
Sbjct: 280 IIHSQYPTVPGRFKDYISTPKPNGYRSIHTTVIGPENQRIEVQIRTKDMNEEADLGVAAH 339
Query: 529 WLYKETGNK 537
W YK +K
Sbjct: 340 WAYKGGASK 348
>gi|260432750|ref|ZP_05786721.1| GTP pyrophosphokinase [Silicibacter lacuscaerulensis ITI-1157]
gi|260416578|gb|EEX09837.1| GTP pyrophosphokinase [Silicibacter lacuscaerulensis ITI-1157]
Length = 710
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 119/218 (54%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N +++ +A F K+ H GQFR +G+PY +H + IL + +R D T++
Sbjct: 16 PKTNADRITRAYEFGKQMHEGQFRHSGEPYFSHPVAVAAIL------TEQRLDDATIITA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S I E FGDEVA LV GV++L+ N+ + ++A
Sbjct: 70 LLHDTIEDTKASYSKIAELFGDEVAMLVDGVTKLT------------NLQLSSRETKQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 118 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPEKQVQKARETMDIYAPLAGRMGMQW 177
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 178 MREELEDLAFRVL----------NPEGRQSIIRRFITL 205
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ KD G ++ D R++ + + CY L
Sbjct: 228 GIEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIITQSE---------EDCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 279 AIHQRWRAVPGRFKDYISQPKSNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAESGVAAH 338
Query: 529 WLYKETGNKLQSISSMDESDIEAS-SSLSKDTDDHN 563
W Y++ G + ++ ++D + AS + DDH
Sbjct: 339 WSYRD-GVRTENPFAVDPAKWIASLTEQFNSEDDHE 373
>gi|83855032|ref|ZP_00948562.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sulfitobacter sp. NAS-14.1]
gi|83842875|gb|EAP82042.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sulfitobacter sp. NAS-14.1]
Length = 716
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 31/219 (14%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVA 154
P N+ Q++ A + ++ H GQFR +G+PY TH + IL ++ +D T++
Sbjct: 20 PKTNENQIRLAYEYGQQMHEGQFRHSGEPYFTHPVSVAAILT-------EQQLDDATIIT 72
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
+LHD ++D S S++E+FG +VA+LV GV++L+ + ++N N+ ++A
Sbjct: 73 ALLHDTIEDTKASYSSVDEKFGHDVAELVDGVTKLTNL--------QLNSNET----KQA 120
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+ R + + M D RV+L+KLADRLHNMRTI ++ P K A+ET+ I+ LA R+G+
Sbjct: 121 ENFRKLFMAMSKDLRVILVKLADRLHNMRTIKSMRPDKQIQKARETMDIYAPLAGRMGMQ 180
Query: 275 ALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 181 WMREELEDLAFRVL----------NPEGRQSIIRRFITL 209
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ K ++ D RV+ ++ CY L
Sbjct: 232 GIEAEVFGRAKKPYSIWRKMQEKQQSFSRLSDIYGFRVITTSEDE---------CYRALG 282
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+HR W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 283 TIHRRWRAVPGRFKDYISQPKTNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAESGVAAH 342
Query: 529 WLYKE 533
W Y++
Sbjct: 343 WSYRD 347
>gi|336421845|ref|ZP_08602000.1| hypothetical protein HMPREF0993_01377 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009694|gb|EGN39685.1| hypothetical protein HMPREF0993_01377 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 781
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA AK+AH GQ RK+G+PY+ H + ILA L + +T+V+G
Sbjct: 59 HPSTDVSMIEKAYQLAKKAHGGQCRKSGEPYIVHPLWVAIILADL-----EMDKETIVSG 113
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D S I+ EFG+EVA LV GV++L R++ + L +A
Sbjct: 114 MLHDVVEDTEVSEEDIKREFGEEVALLVDGVTKLG----------RLSYSSDKL-EVQAE 162
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV++IKLADRLHNMRT+ + PAK + A+ET+ I+ +A RLG+
Sbjct: 163 NLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMTPAKQKEKAKETMDIYAPIAQRLGISK 222
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL Q
Sbjct: 223 IKTELDDLALKYSQ 236
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 89/140 (63%), Gaps = 9/140 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R+K +SI+ KM +D + +VYD A+R++V +++ CY+ L +
Sbjct: 274 IKADVNGRVKHFFSIYKKMVNQDKTVDQVYDLFAVRIIV---------DSVKDCYAALGV 324
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PKP+ YQSLHT + G E+QIRTQ+MH+ AE+G+AAHW
Sbjct: 325 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSVGQPFEIQIRTQEMHKTAEYGIAAHW 384
Query: 530 LYKETGNKLQSISSMDESDI 549
YKE+ + +S+ + +E +
Sbjct: 385 KYKESNDGKKSVEAQEEEKL 404
>gi|150390117|ref|YP_001320166.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus metalliredigens QYMF]
gi|149949979|gb|ABR48507.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus metalliredigens
QYMF]
Length = 727
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 109/189 (57%), Gaps = 17/189 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + E + +A + + AH GQ+RK+G+ Y H + +IL L S T+ AG+
Sbjct: 14 PQCDAELIIRAYHYGENAHQGQYRKSGEQYFIHPVEVAKILIELKMDSS-----TIAAGL 68
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDV++D G + EEFG+EVA+LV GV++L+ ++ + R +A +
Sbjct: 69 LHDVIEDTPYGYGKVREEFGEEVAELVEGVTKLTRLSFESKEER------------QAEN 116
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR M + M D RVVLIKLADRLHNMRT+ K + A ETL I+ +A RLG+ +
Sbjct: 117 LRKMFIAMAKDIRVVLIKLADRLHNMRTLKYQSDEKKKEKAMETLEIFAPIAHRLGISRI 176
Query: 277 KAELEDLCF 285
K ELEDLC
Sbjct: 177 KWELEDLCL 185
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K YSI+ KM ++ +++D A RV+V + ++ CY +L
Sbjct: 226 GIENEISGRPKHFYSIYRKMVYQNKSFDEIFDFIAFRVIVNN---------VKDCYGILG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLHT V GP+G E+QIRT++MH+ AE G+AAH
Sbjct: 277 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPNGEPFEIQIRTKEMHQIAEFGIAAH 336
Query: 529 WLYKETGNKLQSISSMDESD 548
W YKE +SI++ D+ D
Sbjct: 337 WSYKEG----KSINNEDDMD 352
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 785
E ++ K+ LR ML WE+ + S K+ N V V P GE++
Sbjct: 348 EDDMDTKLTWLRQMLEWEKDTKDPKEFMASLKVDLYTNE----------VFVFTPKGEVI 397
Query: 786 RLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
L SGST D A K VG + V+ ++V + +LK+G+IVE+
Sbjct: 398 NLPSGSTPIDFAYKIHSDVGNKCVGAKVDSRMVPIDYKLKNGNIVEI 444
>gi|428770116|ref|YP_007161906.1| (p)ppGpp synthetase I SpoT/RelA [Cyanobacterium aponinum PCC 10605]
gi|428684395|gb|AFZ53862.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanobacterium aponinum PCC
10605]
Length = 751
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 115/226 (50%), Gaps = 33/226 (14%)
Query: 83 PGTFIVDGVDVTGYPIF-------------NDEQ---VQKAIAFAKRAHHGQFRKTGDPY 126
P T I + D Y ++ NDE + +A FA H GQ RK+G+PY
Sbjct: 3 PITLIPESTDNKTYQVYIPNWLNNCLIGDQNDENNNLICRAFQFAYSLHEGQMRKSGEPY 62
Query: 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186
+ H I +L L S + + AG LHDVV+D + IE FG V +LV V
Sbjct: 63 IAHPIAVAELLRDLGGDS-----EMIAAGFLHDVVEDTPTTPEDIEVMFGKNVRQLVEAV 117
Query: 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIY 246
++LS N + R +A + R M + M D RV+++KLADRLHNMRT+
Sbjct: 118 TKLSKFNFSSKTER------------QAENFRRMFIAMAQDIRVIVVKLADRLHNMRTLD 165
Query: 247 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRA 292
LPP K R +A+ET I+ LA+RLG+W K ELEDL F L A
Sbjct: 166 FLPPEKQRLIAEETKEIFAPLANRLGIWHFKWELEDLSFKYLHPEA 211
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
V + R K LY I+ KM R+ ++YD A+R++V + CY L +VH
Sbjct: 249 VEVKGRPKHLYGIYHKMMRQKKEFEQIYDIAAVRIIVNTNDE---------CYRTLAVVH 299
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PKP+ YQSLHT V +G LE+QIRT +MH AE+G+AAHW Y
Sbjct: 300 DAFRPIPGRFKDYIGLPKPNLYQSLHTTVVNSNGRPLEIQIRTLEMHYVAEYGIAAHWKY 359
Query: 532 KETGN-KLQSISSMDE 546
KETG+ + +SS DE
Sbjct: 360 KETGHSNHRHLSSDDE 375
>gi|383807399|ref|ZP_09962959.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Aquiluna sp. IMCC13023]
gi|383298753|gb|EIC91368.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Candidatus
Aquiluna sp. IMCC13023]
Length = 714
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 23/227 (10%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T +P + + KA +A++ H GQ RK+G+ Y+TH + GRILA L SG T+
Sbjct: 10 TNHPKADLAVIDKAFQYAEKYHTGQLRKSGEQYITHPLAVGRILADL--GSGPA---TIA 64
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHD V+D S+ ++E++FG EVA LV GV++L V G E
Sbjct: 65 AALLHDTVEDTEYSIEALEKDFGPEVALLVDGVTKLD------------KVKFGDSAQSE 112
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
+R M++ M D RV++IKLADRLHN RT + P AR AQETL I+ LA RLG+
Sbjct: 113 T--MRKMVVAMSKDVRVLVIKLADRLHNARTWGFVSPESARKKAQETLEIYAPLAHRLGI 170
Query: 274 WALKAELEDLCFAVL--QMRADLASMWSPRN--RVGYSRRITTIVSS 316
+K ELED+ F+VL ++ ++ S+ RN R Y++ + +SS
Sbjct: 171 STMKVELEDISFSVLYPKVYEEIVSLVGQRNPLRSDYTQNVIDEISS 217
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM + +YD +RV+V +++ CY+ L +H
Sbjct: 228 IDGRPKQYYSIYQKMVLRGREFDDIYDLVGVRVIVA---------SVKDCYAALGAIHAR 278
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DY+ PK + YQSLHT V GPDG A+E+QI+T +MH+ AE G+AAHW YK
Sbjct: 279 WSPLPGRFKDYVAMPKFNLYQSLHTTVVGPDGRAVEIQIKTLEMHQRAEFGVAAHWKYKA 338
Query: 534 TGNK 537
K
Sbjct: 339 QSGK 342
>gi|375291020|ref|YP_005125560.1| GTP pyrophosphokinase [Corynebacterium diphtheriae 241]
gi|375293231|ref|YP_005127770.1| GTP pyrophosphokinase [Corynebacterium diphtheriae INCA 402]
gi|376242956|ref|YP_005133808.1| GTP pyrophosphokinase [Corynebacterium diphtheriae CDCE 8392]
gi|376245851|ref|YP_005136090.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC01]
gi|376254443|ref|YP_005142902.1| GTP pyrophosphokinase [Corynebacterium diphtheriae PW8]
gi|376290560|ref|YP_005162807.1| GTP pyrophosphokinase [Corynebacterium diphtheriae C7 (beta)]
gi|371580691|gb|AEX44358.1| GTP pyrophosphokinase [Corynebacterium diphtheriae 241]
gi|371582902|gb|AEX46568.1| GTP pyrophosphokinase [Corynebacterium diphtheriae INCA 402]
gi|372103956|gb|AEX67553.1| GTP pyrophosphokinase [Corynebacterium diphtheriae C7 (beta)]
gi|372106198|gb|AEX72260.1| GTP pyrophosphokinase [Corynebacterium diphtheriae CDCE 8392]
gi|372108481|gb|AEX74542.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC01]
gi|372117527|gb|AEX69997.1| GTP pyrophosphokinase [Corynebacterium diphtheriae PW8]
Length = 759
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|389798715|ref|ZP_10201725.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
gi|388444397|gb|EIM00510.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
Length = 710
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 146/323 (45%), Gaps = 92/323 (28%)
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A LR +LL +V D RVV + LA +L MR A P + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAPARPEGERQALARLTRDIHAPLANRLGI 170
Query: 274 WALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 333
W LK ELEDL F LQ RRI + LDER A D E+F
Sbjct: 171 WQLKWELEDLAFRYLQ--------------PDTYRRIANL-----LDERRA-DREAFIRD 210
Query: 334 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACE 393
S+ +L A+ I ++ R K ++ + K + Q+K+ D
Sbjct: 211 -----SLAELQRALEAAGIQAELAGRPKHIYSIWK--KMQRKSLDFSD------------ 251
Query: 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 453
LY I RA+RV+V +
Sbjct: 252 ---------------------------LYDI-----------------RAVRVLVDN--- 264
Query: 454 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 513
I CY+ L +VH LW + GEFDDYI PK +GYQSLHTAV GP G LEVQIR
Sbjct: 265 ------ITDCYAALGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKTLEVQIR 318
Query: 514 TQKMHEYAEHGLAAHWLYKETGN 536
T MH E G+AAHW YKE G+
Sbjct: 319 THAMHRANELGVAAHWRYKEGGS 341
>gi|400974675|ref|ZP_10801906.1| GTP pyrophosphokinase [Salinibacterium sp. PAMC 21357]
Length = 721
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 115/196 (58%), Gaps = 19/196 (9%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T +P N +++A A A RAH GQ RK+G+PY+TH + +ILA L G++ T+
Sbjct: 10 THHPKANLALIERAYAAAFRAHDGQKRKSGEPYITHPVAVAQILAEL--GIGEK---TIA 64
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHD V+D SL + EFGDE+A LV GV++L V G +
Sbjct: 65 AALLHDTVEDTAYSLDELRVEFGDEIAMLVDGVTKLD------------KVKYGDSA--Q 110
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A +R M++ M D RV++IKLADRLHN RT +P A AQETL I+ LA RLG+
Sbjct: 111 AETVRKMIVAMSKDIRVLVIKLADRLHNARTWGFVPRDSASRKAQETLEIYAPLAHRLGI 170
Query: 274 WALKAELEDLCFAVLQ 289
A+K ELEDL FAVL
Sbjct: 171 QAIKIELEDLSFAVLH 186
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 12/132 (9%)
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
+ +S I G T++ R K YSI+ KM + ++YD +RV+V +++
Sbjct: 219 LKSSRIKG---TVAGRPKQYYSIYQKMIVRGREFDEIYDLVGIRVLVN---------SVR 266
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY++L +H W PI G F DYI PK + YQSLHT V GP G A+E+QIRT +MH A
Sbjct: 267 DCYAVLGSIHARWNPIPGRFKDYIATPKFNLYQSLHTTVIGPQGRAVEIQIRTNEMHHRA 326
Query: 522 EHGLAAHWLYKE 533
E G+AAHW YK+
Sbjct: 327 EFGVAAHWKYKD 338
>gi|376287865|ref|YP_005160431.1| GTP pyrophosphokinase [Corynebacterium diphtheriae BH8]
gi|371585199|gb|AEX48864.1| GTP pyrophosphokinase [Corynebacterium diphtheriae BH8]
Length = 759
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|376251442|ref|YP_005138323.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC03]
gi|376257255|ref|YP_005145146.1| GTP pyrophosphokinase [Corynebacterium diphtheriae VA01]
gi|372112946|gb|AEX79005.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC03]
gi|372119772|gb|AEX83506.1| GTP pyrophosphokinase [Corynebacterium diphtheriae VA01]
Length = 759
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|363420442|ref|ZP_09308534.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus pyridinivorans AK37]
gi|359735684|gb|EHK84641.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus pyridinivorans AK37]
Length = 770
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + Q+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 59 YPKADLSQLQRAYDVAEERHASQKRKSGDPYITHPLAVATILAELGMDT-----TTLVAA 113
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + EFG+EVA LV GV++L + LG E
Sbjct: 114 LLHDTVEDTGYTLEQLTAEFGEEVAHLVDGVTKLDKV---------------VLGSAAEG 158
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 159 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 218
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 219 TVKWELEDLAFAILH 233
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 271 IDAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCNE---------IRDCYAAVGV 321
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE G+AAHW
Sbjct: 322 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTHEMHRTAEFGIAAHW 381
Query: 530 LYKET-GNKLQSISSMDE 546
YKET G ++ +D+
Sbjct: 382 RYKETKGRHSGDVAELDD 399
>gi|152985899|ref|YP_001349924.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
gi|150961057|gb|ABR83082.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQS 540
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGTITLEAVNKRFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|407685907|ref|YP_006801080.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407289287|gb|AFT93599.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 703
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 112/189 (59%), Gaps = 18/189 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQ++ A+ AH GQ R +GDPY+TH + ILA + +T++A +LHDV++D
Sbjct: 23 VQESFVLAQEAHDGQMRSSGDPYITHPVAVAGILADMHLDH-----ETIMAALLHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + E FGD VA+LV GVS+L + T +A + R M++
Sbjct: 78 THYSKEDLAEAFGDTVAELVEGVSKLD------------KLAFSTKQEAQAENFRKMMMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A RLG+ +K ELEDL
Sbjct: 126 MVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYAPIAHRLGIHDIKNELEDL 185
Query: 284 CF-AVLQMR 291
F A+ MR
Sbjct: 186 GFQAMYPMR 194
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K LYSI+ KM+ K++ ++V D A R+VV ++ CY L
Sbjct: 229 IESDVLGREKHLYSIYRKMKNKELMFNEVMDIYAFRIVV---------KSVDNCYRALGA 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI+ F DYI P+ +GYQSLHT++ GP G +E+QIRTQ+M + A+ G+AAHW
Sbjct: 280 MHGLYKPIENRFKDYIAIPRTNGYQSLHTSLIGPHGIPVEIQIRTQEMDQMADKGVAAHW 339
Query: 530 LYKETGN-----KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
LYKE G+ +L++ M +S +E S S + + TDLF
Sbjct: 340 LYKEPGDNGTTAQLRARKWM-QSLLELQQSASSSFEFIESVKTDLF 384
>gi|410629044|ref|ZP_11339758.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Glaciecola mesophila KMM 241]
gi|410151413|dbj|GAC26527.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Glaciecola mesophila KMM 241]
Length = 709
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 18/190 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+ Q+A A+ AH GQ R +GDPY+TH + ILA + + +T++A +LHDV++
Sbjct: 22 ETQRAFVVAQEAHDGQMRSSGDPYITHPVAVAGILADM-----RLDHETLMAALLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + S+ E+FG+ V +LV GVS+L I+ ++ ++ + R ML+
Sbjct: 77 DTHHNKESLSEQFGETVGELVEGVSKLEKIHFSSKQEAQVE------------NFRKMLM 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A RLG+ +K ELED
Sbjct: 125 AMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPIAHRLGIHDIKNELED 184
Query: 283 LCF-AVLQMR 291
L F A+ MR
Sbjct: 185 LGFQAMYPMR 194
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
GM R K LYSI+ KM+ K++ ++V D A RVVV + CY L
Sbjct: 228 GMNALTIGREKHLYSIYRKMKNKELMFNEVMDIYAFRVVVDSADN---------CYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ PI+G F DY+ P+ +GYQSLHT++ GP G +E+QIRT +M + A+ G+AAH
Sbjct: 279 AMHGLYKPIEGRFKDYVAIPRTNGYQSLHTSLIGPHGIPVEIQIRTAEMDKMADIGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W+YK+ + + + +S IE S S + + TDLF
Sbjct: 339 WMYKDDSESSDTTAQVRARKWMQSLIELQQSASSSFEFIENVKTDLF 385
>gi|419860937|ref|ZP_14383577.1| GTP pyrophosphokinase [Corynebacterium diphtheriae bv. intermedius
str. NCTC 5011]
gi|387982621|gb|EIK56122.1| GTP pyrophosphokinase [Corynebacterium diphtheriae bv. intermedius
str. NCTC 5011]
Length = 759
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|417922710|ref|ZP_12566197.1| RelA/SpoT family protein [Streptococcus cristatus ATCC 51100]
gi|342832237|gb|EGU66537.1| RelA/SpoT family protein [Streptococcus cristatus ATCC 51100]
Length = 739
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 108/188 (57%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A H GQ RK+G+PY+ H I ILA L K +V G LHDVV+D
Sbjct: 28 VQKALIYAMECHSGQTRKSGEPYIVHPIQVAGILAKL-----KLDAVSVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L +E EFG +V +V GV++L + HEE A + R ML
Sbjct: 83 TAATLDDLEREFGHDVRVIVDGVTKLGKVK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M +D RV+L+KLADRLHNMRT+ L P K ++QET+ I+ LA RLG+ ++K ELE
Sbjct: 129 MAMSEDLRVILVKLADRLHNMRTLNHLRPDKQERISQETMEIYAPLAHRLGISSVKWELE 188
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 189 DLSFRYLN 196
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R ++ + Y++L +H L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFDEIYDLIAIRCILSTHSD---------VYAMLGYIHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WKPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|383758537|ref|YP_005437522.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
gi|381379206|dbj|BAL96023.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
Length = 745
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GLRAEVYGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECYRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 529 WLYKETG 535
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVD 162
+++A AFA+ G TG+P L H IL + + RA +V AG D +
Sbjct: 34 LERARAFAEPLLAGHLLDTGEPALVHADGVAAILQAIGAAPSMRAAAYLVYAG---DYLQ 90
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
E + + FG A LV RL I + R + + + MLL
Sbjct: 91 HPEEM---VAKAFGQSYASLVTHTRRLVQIQRATRAATVLEAQRQQQAEQVRK----MLL 143
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
D RVVL++LA RL +R A +A+ET I+ LA+RLG+W +K ELED
Sbjct: 144 AFSHDLRVVLLRLASRLQTLRWYAAERVPCPEVLAEETQQIFAPLANRLGIWQIKWELED 203
Query: 283 LCFAVLQ 289
L F LQ
Sbjct: 204 LAFRFLQ 210
>gi|333899695|ref|YP_004473568.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas fulva 12-X]
gi|333114960|gb|AEF21474.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas fulva 12-X]
Length = 748
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V PA++ CY+ L
Sbjct: 256 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PAVRDCYTALG 306
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTSNMHEEAELGVCAH 366
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L V L
Sbjct: 83 DSLVAAVIYRGVREGKIPLAEVRQRFGPVVAKLIEGVLRMAAISASLNPRGESTV----L 138
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + ++LR ML+ MVDD RV LIKLA+R +R + + + VA+E I+ LA
Sbjct: 139 GSQAQVDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKDTDEERRQRVAREVFDIYAPLA 198
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 HRLGIGHIKWELEDLSFRYLE 219
>gi|430809513|ref|ZP_19436628.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
gi|429498027|gb|EKZ96543.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
Length = 742
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 529 WLYKETGNK 537
W YKE G +
Sbjct: 353 WRYKEAGGR 361
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 104 VQKAIAFAKRAHHGQ---FRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI-LHD 159
V++A+A+ + G+ TG+ L+H RIL G R D A L
Sbjct: 20 VERALAYVREKADGEKPTTLPTGETVLSHAEGMLRIL------DGLRVDDAARAAACLFP 73
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR--RINVNQGTLGHEEANDL 217
+V IEE FG++VA+LV GV +L I + + + +Q E+ L
Sbjct: 74 MVAFVPGVEAHIEERFGEDVARLVKGVRQLLRIGAIATQAETAETSKSQAAARQEQVEAL 133
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R MLL D RVVL++LA RL +R + VA+ETL I+ LA+RLG+W +K
Sbjct: 134 RKMLLAFAQDIRVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMK 193
Query: 278 AELEDLCFAVLQ 289
ELEDL F Q
Sbjct: 194 WELEDLAFRFEQ 205
>gi|339441909|ref|YP_004707914.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
gi|338901310|dbj|BAK46812.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
Length = 779
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 113/189 (59%), Gaps = 16/189 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH GQ RK+G+ Y+ H + ILA L + +T+VAG+LHDV +D
Sbjct: 55 VEKAYHIAANAHKGQVRKSGEEYIIHPLCVAIILADL-----EMDKETIVAGLLHDVAED 109
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L + E+F DEVA LV GV++L NQL +I V +A +LR M L
Sbjct: 110 TGMTLEELAEDFNDEVALLVDGVTKL---NQLSYDADKIEV--------QAENLRKMFLA 158
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ ++K ELEDL
Sbjct: 159 MAKDIRVIIIKLADRLHNMRTLQFMKPEKQKEKARETMEIYAPIAQRLGISSIKVELEDL 218
Query: 284 CFAVLQMRA 292
L+ A
Sbjct: 219 SLKYLEPEA 227
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 403 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 462
ST +E T+ R K +SI+ KM +D + ++YD A+R++V D ++
Sbjct: 255 STIAAADIEATVYGRAKHFFSIYKKMVNQDKTLDQIYDLFAIRIIVKD---------VKD 305
Query: 463 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 522
CY+ L ++H + P+ G F DYI PKP+ YQSLHT + GP+G E+QIRT++MH E
Sbjct: 306 CYAALGVIHEHYTPVPGRFKDYIAMPKPNMYQSLHTTLMGPNGQPFEIQIRTEEMHRTCE 365
Query: 523 HGLAAHWLYKETGN 536
+G+AAHW YKE N
Sbjct: 366 YGIAAHWKYKEANN 379
>gi|332524801|ref|ZP_08400994.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
gi|332108103|gb|EGJ09327.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
Length = 744
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GIRAEVHGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECFRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 529 WLYKETG 535
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-AGILHDVVD 162
+++A AFA+ G TG+P L H IL + + RA +V AG D +
Sbjct: 34 LERARAFAEPLLAGHLLDTGEPALLHADGVAAILQAIGAAPSMRAAAYLVYAG---DYLQ 90
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
E + + FG A LV RL I + R + + + MLL
Sbjct: 91 HPEEM---VAKAFGQSYASLVTHTRRLVQIQRATRAASVLEAQRQQQAEQVRK----MLL 143
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
D RVVL++LA RL +R A + +A+ET I+ LA+RLG+W +K ELED
Sbjct: 144 AFSHDLRVVLLRLASRLQTLRWYAAERVPCPQELAEETQQIFAPLANRLGIWQIKWELED 203
Query: 283 LCFAVLQ 289
L F LQ
Sbjct: 204 LAFRFLQ 210
>gi|239827847|ref|YP_002950471.1| (p)ppGpp synthetase I SpoT/RelA [Geobacillus sp. WCH70]
gi|239808140|gb|ACS25205.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacillus sp. WCH70]
Length = 732
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 104/187 (55%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q+RK+G+PY+ H I IL L K T+ AG LHDVV
Sbjct: 26 EFIKKAYEFANHAHRDQYRKSGEPYIIHPIQVAGILVDL-----KMDPATIAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E EFG EVA LV GV++L + + ++A + R M
Sbjct: 81 EDTEATKEDLEREFGSEVAMLVDGVTKLG------------KIKYKSQEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKE 348
>gi|255280796|ref|ZP_05345351.1| GTP diphosphokinase [Bryantella formatexigens DSM 14469]
gi|255268733|gb|EET61938.1| RelA/SpoT family protein [Marvinbryantia formatexigens DSM 14469]
Length = 774
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A AH GQ RK+G+PY+ H + ILA L + +T+ AG
Sbjct: 49 HPSADTSMIEKAYKIASEAHKGQKRKSGEPYIIHPLCVAIILADL-----EMDKETITAG 103
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D + I +EFG++V +LV GV++L QL +I V +A
Sbjct: 104 LLHDVVEDTVMTSEEIRQEFGEDVEQLVDGVTKLG---QLSYSADKIEV--------QAE 152
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+
Sbjct: 153 NLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMSPEKQKEKARETMDIYAPIAQRLGISK 212
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL LQ
Sbjct: 213 IKVELDDLSLKYLQ 226
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 16/168 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L
Sbjct: 263 GIRAQVDGRVKHFFSIYKKMVNQDKTIDQIYDLFAVRIIVD---------TVKDCYAALG 313
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP+G+ E+QIRT +MH+ AE+G+AAH
Sbjct: 314 VIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLIGPNGTPFEIQIRTFEMHKTAEYGIAAH 373
Query: 529 WLYKETGNKLQSISSMDESD-------IEASSSLSKDTDDHNPLDTDL 569
W YKE + + SS +E +E +S + + N L +DL
Sbjct: 374 WKYKEQSDGKKPDSSREEEKMTWLRQILEWQRDMSDNHEFLNLLKSDL 421
>gi|42519264|ref|NP_965194.1| GTP pyrophosphokinase [Lactobacillus johnsonii NCC 533]
gi|385825782|ref|YP_005862124.1| GTP pyrophosphokinase [Lactobacillus johnsonii DPC 6026]
gi|41583552|gb|AAS09160.1| GTP pyrophosphokinase [Lactobacillus johnsonii NCC 533]
gi|329667226|gb|AEB93174.1| GTP pyrophosphokinase [Lactobacillus johnsonii DPC 6026]
Length = 749
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|417837430|ref|ZP_12483668.1| GTP pyrophosphokinase , ppGpp synthetase I [Lactobacillus johnsonii
pf01]
gi|338760973|gb|EGP12242.1| GTP pyrophosphokinase , ppGpp synthetase I [Lactobacillus johnsonii
pf01]
Length = 749
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|333979510|ref|YP_004517455.1| (p)ppGpp synthetase I SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822991|gb|AEG15654.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 724
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 142/272 (52%), Gaps = 42/272 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA++AH Q R +G+P++TH + ILA L + + T+VAG+LHDVV+D
Sbjct: 30 LSKAYRFAEQAHRDQKRISGEPFITHPVAVAHILANL-----QMDLQTLVAGLLHDVVED 84
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L I+ FGDEVA LV GV++LS + +R +Q A +LR M L
Sbjct: 85 TGVTLEEIKTAFGDEVALLVDGVTKLSRLE-----YRSKEEHQ-------AENLRKMFLA 132
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHN+RT+ K + +A+ETL I+ LA RLG++ LK ELEDL
Sbjct: 133 MAQDIRVILIKLADRLHNLRTLKYHTETKQKEIARETLEIYAPLAHRLGIYHLKWELEDL 192
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
F L+ P + R++ RT E + +L K L
Sbjct: 193 SFRYLE----------PEKYYELAERVS----------RTRRKREEYIRTAIQILRRK-L 231
Query: 344 LEAVVPFDILSDRRKRTKFLHDLAKSSEAQKK 375
EA I +D + R K L+ + E Q+K
Sbjct: 232 AEA----GIFADIQGRPKHLYSIYTKMEKQQK 259
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K LYSI++KM ++ + ++YD A+RV+V +I+ CY++L
Sbjct: 235 GIFADIQGRPKHLYSIYTKMEKQQKDLSEIYDVMAVRVIV---------ESIRDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH LW PI G F DYI PK + YQSLHT V GP G LE+QIRT++MH AE+G+AAH
Sbjct: 286 TVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVVGPQGEPLEIQIRTREMHRTAEYGIAAH 345
Query: 529 WLYKETGN 536
W YKE G
Sbjct: 346 WRYKEGGK 353
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 730 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 789
++ K+ LR +L W+ +LR +S K + DSV V P G+++ L +
Sbjct: 358 LDQKLAWLRQILEWQRELRDAREFMESL---KIDLFADSV------FVFTPKGDVIELPA 408
Query: 790 GSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 828
GS D A +V E G + VNG++V + +LK+GDIVE+
Sbjct: 409 GSVPIDFAYRVHTEVGHRCVGARVNGRIVPLDYQLKNGDIVEI 451
>gi|337288950|ref|YP_004628422.1| (p)ppGpp synthetase I SpoT/RelA [Thermodesulfobacterium sp. OPB45]
gi|334902688|gb|AEH23494.1| (p)ppGpp synthetase I, SpoT/RelA [Thermodesulfobacterium geofontis
OPF15]
Length = 725
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 118/192 (61%), Gaps = 16/192 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P N V+KA +A R H GQ RK+G+PYL+H + ILA + K + T+ AG+
Sbjct: 16 PGCNTRIVEKAYEWAARIHEGQMRKSGEPYLSHPMEVAYILAQM-----KLDLPTIAAGL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
LHDVV+D+ S+ I++EFG+EVA +V GV++L + +V++ T ++A
Sbjct: 71 LHDVVEDSQVSIEDIKKEFGEEVAFIVDGVTKLKNLPS--------SVDKLT---QQAES 119
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
LR ++ M D RV+L+KLADRLHNMRT+ K + +A+ETL I+ LA RLG+ +
Sbjct: 120 LRKIIFAMSKDLRVILVKLADRLHNMRTLEYQAEHKRQRIAKETLEIYAPLAGRLGIDWV 179
Query: 277 KAELEDLCFAVL 288
K ELEDL F L
Sbjct: 180 KCELEDLAFKYL 191
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 12/120 (10%)
Query: 417 RLKSLYSIFSKMRRKDVGIH---KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
R+K LYS++ K+++ ++ I ++YD R++V ++ CY L +VH L
Sbjct: 237 RVKHLYSVYKKLQKYNLTIDELDQIYDLIGFRIIVN---------TVEECYKTLGLVHTL 287
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI G F DYI PKP+ YQSLHT V GP+ +E+QIRT+ M A G+AAH+LYKE
Sbjct: 288 WTPIPGRFKDYISLPKPNMYQSLHTTVLGPNSKKIEIQIRTEYMDRVANEGIAAHFLYKE 347
>gi|335044397|ref|ZP_08537422.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Methylophaga aminisulfidivorans MP]
gi|333787643|gb|EGL53527.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Methylophaga aminisulfidivorans MP]
Length = 718
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ +++A FA AH GQ R++G+ Y+TH + +LAM+ + ++AG+LHDV+
Sbjct: 40 DAIRRAYHFADNAHEGQTRRSGERYITHPLAVAHVLAMM-----HMDYECIMAGLLHDVI 94
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + EFG+EV +LV GV++L+ T H +A +LR ML
Sbjct: 95 EDTALTKADLAAEFGEEVGELVEGVTKLA------------KAAFETQKHAQAENLRKML 142
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ +A RLG+ ++ ELE
Sbjct: 143 LAMSRDIRVIIVKLADRLHNMRTLGHLRPEKRRRIANETLDIYAPIAQRLGMNLMRCELE 202
Query: 282 DLCFAVL 288
DL F VL
Sbjct: 203 DLGFHVL 209
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 28/183 (15%)
Query: 359 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 418
R + L D + S +K V Q L + E+E G+ + R
Sbjct: 213 RYRVLQDAVRKSRGNRKEIVTQITASILNRM-------EQE---------GLSADIQGRE 256
Query: 419 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 478
K+LYS++ KM K + +V D A R++V D + CY +L +VH L+ P+
Sbjct: 257 KNLYSLYKKMVSKQLSFSEVMDVYAFRIIVDD---------VDACYRMLGVVHNLYKPVQ 307
Query: 479 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK---ETG 535
G+F DYI PK +GYQSLHT + GP G +EVQIR++ M AE G+AAHWLYK G
Sbjct: 308 GKFKDYIAIPKANGYQSLHTVLFGPYGVPIEVQIRSRDMDHMAEAGVAAHWLYKTGESVG 367
Query: 536 NKL 538
N L
Sbjct: 368 NNL 370
>gi|320594365|gb|ADW54434.1| RelA [Pseudomonas sp. DF41]
gi|342674037|gb|AEL31268.1| RelA [Pseudomonas chlororaphis]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQS 540
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LI+LA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIRLAERTCAIRAVKNADEEKRHCVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|444920954|ref|ZP_21240793.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Wohlfahrtiimonas chitiniclastica SH04]
gi|444508174|gb|ELV08347.1| Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Wohlfahrtiimonas chitiniclastica SH04]
Length = 732
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V++A F AH GQ R +G+PY+ H I IL ++ + VD++V +LHDV++D
Sbjct: 40 VKEACFFGAWAHQGQSRSSGEPYIFHPIEVALILTLV-----QLDVDSIVGAVLHDVIED 94
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I ++FG E A +V GVS+L+ I R ++ +A + R M+L
Sbjct: 95 TDITFEEIAQKFGRETAIIVDGVSKLTKI----RFSSKLEA--------KAENFRKMILA 142
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ AL P K R +A++TL I+ +A+RLG++AL+ ELE+L
Sbjct: 143 MTKDLRVIMVKLADRLHNMRTLGALAPYKKRRIAKDTLDIYTPIAARLGMFALQTELENL 202
Query: 284 CF 285
CF
Sbjct: 203 CF 204
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 21/173 (12%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ ++ R K +S++ K++++ + ++ D ++RV+V ++ CY +L
Sbjct: 245 GISARIAIREKHAWSLYRKLKKRG-SLSQLSDIFSIRVIVN---------SVDECYRVLG 294
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH L PI G F D+I PK +GYQSLHT V G + +EVQIRT++MH AE G AAH
Sbjct: 295 IVHSLNKPIIGRFKDFIAIPKVNGYQSLHTVVFGANMLPVEVQIRTKEMHIIAEAGAAAH 354
Query: 529 WLYKE-------TGNK----LQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
W Y E T NK L S++ + S + + ++ +D P + +F
Sbjct: 355 WRYGEVYREQNYTKNKTREWLDSVTELQNSMLSSEEFMASMKEDLFPSEIYVF 407
>gi|406915627|gb|EKD54692.1| hypothetical protein ACD_60C00057G0017 [uncultured bacterium]
Length = 720
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A AK+AH GQ R TG+PY+TH + +ILA + + T++A ILHDV++D
Sbjct: 23 IEEAYVLAKKAHEGQKRHTGEPYITHPVAVAQILATM-----RMDPPTIIAAILHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ E+FG EVA LV GV++L+ + R +A + R M++
Sbjct: 78 TSVEKPDLIEKFGKEVADLVDGVTKLTQMEFESR------------AQAQAENFRKMIMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+L+K+ADRLHNM+TI LP K R +A+ETL I+ +A+RLG+ A + E EDL
Sbjct: 126 MARDIRVILVKIADRLHNMKTIDCLPLEKRRRIAKETLEIFAPIANRLGMHAFRIEFEDL 185
Query: 284 CFAVL 288
F+ L
Sbjct: 186 GFSAL 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 9/119 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
L+ R K +YSI+ KM K + +V D RV+V DK + CY +L ++H L
Sbjct: 234 LTGREKHIYSIYKKMHEKHLSFSEVMDVYGFRVIV-DK--------LDTCYRVLGVLHNL 284
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
+ P+ F DYI PK +GYQSLHT + GP G +EVQIRT++MH+ AE+G++AHWLYK
Sbjct: 285 YKPLTQRFKDYIAIPKANGYQSLHTVLFGPYGVPIEVQIRTEEMHKMAEYGISAHWLYK 343
>gi|209693825|ref|YP_002261753.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Aliivibrio
salmonicida LFI1238]
gi|208007776|emb|CAQ77897.1| guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase
[Aliivibrio salmonicida LFI1238]
Length = 709
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R TG+PY+ H + RILA + + T++A +LHDV+
Sbjct: 21 EALRRSYLVAKEAHEGQTRSTGEPYIIHPVAVARILAEM-----RLDHKTLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E+FGD VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTQVSKEELAEQFGDTVAELVDGVSKL---DKLKFRDKK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+L++I+ KM+ K+ H + D A RV+ D + CY L
Sbjct: 228 GIKGRVVGREKNLFAIYHKMKNKEQRFHTIMDIYAFRVITDD---------VDTCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH ++ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A G+AAH
Sbjct: 279 QVHSIYKPRPGRIKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAH 338
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 339 WSYKEGDN 346
>gi|420141146|ref|ZP_14648853.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
gi|403246117|gb|EJY59866.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQS 540
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|443469722|ref|ZP_21059876.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
gi|442899174|gb|ELS25705.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
Length = 748
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPDGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKSSS 377
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
F + Q+AIA R G T TG +A ++ + K +++VA +++
Sbjct: 43 FARDAEQQAIAAQNRWAEG----------TSSFQTGLEIAEIL-ADLKLDQESLVAAVIY 91
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDL 217
V + L ++++ FG VAKL+ GV R++ I+ L + + LG + + +L
Sbjct: 92 RGVREGKIQLQAVQQRFGAVVAKLIEGVLRMAAISASLNPRQSM-----VLGAQAQVENL 146
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+ +K
Sbjct: 147 RKMLVAMVDDVRVALIKLAERTCAIREVKNADEEKRHRVAREVFDIYAPLAHRLGIGHIK 206
Query: 278 AELEDLCFAVLQ 289
ELEDL F L+
Sbjct: 207 WELEDLSFRYLE 218
>gi|399521243|ref|ZP_10761983.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110481|emb|CCH38542.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRALRVLV---------PEVRDCYTTLG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 18/200 (9%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGR-------ILAMLIPSSGKRAV 149
P + + +Q+A FA+ A Q T + + + T R ILA L K
Sbjct: 30 PALDRQALQEACEFARDAE--QQANTTEHHWSEGASTFRAGLDIAEILADL-----KLDQ 82
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L ++++ FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVQQRFGAVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEDKRQRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|376248640|ref|YP_005140584.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC04]
gi|372115208|gb|AEX81266.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC04]
Length = 759
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|229828401|ref|ZP_04454470.1| hypothetical protein GCWU000342_00462 [Shuttleworthia satelles DSM
14600]
gi|229792995|gb|EEP29109.1| hypothetical protein GCWU000342_00462 [Shuttleworthia satelles DSM
14600]
Length = 790
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A++AH Q RK+G+PY+ H + ILA L + +T+V G
Sbjct: 52 HPNTDISMIEKAYGIARQAHKDQKRKSGEPYIIHPLSVALILADL-----ELDKETIVGG 106
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D SL + EF DE+A LV GV++L QL ++ + +A
Sbjct: 107 LLHDVVEDTVMSLDDVRREFSDEIALLVDGVTKLG---QLSYDADKVEI--------QAE 155
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ + PAK + A+ET+ I+ LA RLG+
Sbjct: 156 NLRKMFLAMSKDIRVLLIKLADRLHNMRTLKFMTPAKQKEKARETMEIYAPLAQRLGISK 215
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL L+
Sbjct: 216 VKVELDDLALKFLE 229
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K L+SI+ KM + + ++YD A+R++V D ++ CY+ L
Sbjct: 266 GIKAKIYGRAKHLFSIYKKMVNQHKTLDQIYDLFAVRIIVDD---------LKDCYASLG 316
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H + PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH +E+G+AAH
Sbjct: 317 IIHEHYTPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGQPFEIQIRTWEMHRISEYGIAAH 376
Query: 529 WLYKETG 535
W YKE+G
Sbjct: 377 WKYKESG 383
>gi|15596131|ref|NP_249625.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|107100390|ref|ZP_01364308.1| hypothetical protein PaerPA_01001415 [Pseudomonas aeruginosa PACS2]
gi|116048857|ref|YP_792342.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893097|ref|YP_002441966.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|254245218|ref|ZP_04938540.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|296390712|ref|ZP_06880187.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAb1]
gi|313105818|ref|ZP_07792081.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|355647570|ref|ZP_09055107.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|386060166|ref|YP_005976688.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|386064659|ref|YP_005979963.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985589|ref|YP_006484176.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|416858716|ref|ZP_11913485.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|416875655|ref|ZP_11918813.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|418583603|ref|ZP_13147672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|418588968|ref|ZP_13152898.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|419753887|ref|ZP_14280285.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|421162455|ref|ZP_15621297.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|421169697|ref|ZP_15627704.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|421176068|ref|ZP_15633737.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|421182068|ref|ZP_15639553.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|421515556|ref|ZP_15962242.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|424940017|ref|ZP_18355780.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|451987418|ref|ZP_21935576.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|9946839|gb|AAG04323.1|AE004528_1 GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|115584078|gb|ABJ10093.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126198596|gb|EAZ62659.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|218773325|emb|CAW29137.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|310878583|gb|EFQ37177.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|334839201|gb|EGM17894.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|334841754|gb|EGM20376.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|346056463|dbj|GAA16346.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|347306472|gb|AEO76586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|348033218|dbj|BAK88578.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|354827764|gb|EHF11903.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|375047211|gb|EHS39760.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|375052127|gb|EHS44586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|384399826|gb|EIE46191.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321094|gb|AFM66474.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|404349284|gb|EJZ75621.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|404525836|gb|EKA36084.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|404531419|gb|EKA41374.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|404534535|gb|EKA44267.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|404542788|gb|EKA52097.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|451755036|emb|CCQ88099.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|453047959|gb|EME95672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA21_ST175]
Length = 747
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQS 540
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|333897247|ref|YP_004471121.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112512|gb|AEF17449.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 718
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA +A +AH GQ+R +G+PY+ H + ILA L + V T+ +G+LHDV++D
Sbjct: 22 ILKAYDYALKAHEGQYRNSGEPYIVHPVEVAMILADL-----ELDVSTIASGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S I+ EFG E+A LV GV++L I + V Q +A ++R ML+
Sbjct: 77 TSISYEDIKNEFGQEIADLVDGVTKLGMIEY------KSKVEQ------QAENMRKMLIA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ L K + AQETL I+ +A RLG+ +K ELEDL
Sbjct: 125 MAKDIRVIMIKLADRLHNMRTLKFLSEEKQKEKAQETLEIYAPIAHRLGMSMIKWELEDL 184
Query: 284 CFAVL 288
L
Sbjct: 185 SLRYL 189
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM++++ ++YD A+RV+V ++ CY L
Sbjct: 227 GIKADVDGRPKHFYSIYKKMKQQNKTFEQIYDLMAVRVIVN---------TVKDCYGTLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ G F DYI PKP+ YQSLHT V GP G E+QIRT MH AE+G+AAH
Sbjct: 278 VVHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWDMHRTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
S E + K+ LR +L W+ +L+ ++ K + D V V P G++
Sbjct: 345 SYEDEFDAKLSWLRQLLEWQRELKDAKEFMETL---KIDLFTDEVY------VFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEV 828
+ L +GST D A + E L VNG++V + ELK+GDIVE+
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPIDYELKNGDIVEI 443
>gi|418463632|ref|ZP_13034628.1| (p)ppGpp synthetase, RelA/SpoT family protein [Saccharomonospora
azurea SZMC 14600]
gi|359732115|gb|EHK81136.1| (p)ppGpp synthetase, RelA/SpoT family protein [Saccharomonospora
azurea SZMC 14600]
Length = 774
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 72 LQRAYDVAEELHREQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 126
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ + EFG++VA+LV GV++L V GT EA +R M++
Sbjct: 127 TDYSVEQLTNEFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 172
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 173 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 232
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 233 AFAILQ 238
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V + ++ CY+ + +VH L
Sbjct: 280 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVEE---------VRDCYAAMGVVHAL 330
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 331 WQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 390
Query: 534 T 534
T
Sbjct: 391 T 391
>gi|268319355|ref|YP_003293011.1| GTP pyrophosphokinase [Lactobacillus johnsonii FI9785]
gi|262397730|emb|CAX66744.1| GTP pyrophosphokinase [Lactobacillus johnsonii FI9785]
Length = 749
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|406898727|gb|EKD42212.1| hypothetical protein ACD_73C00262G0001, partial [uncultured
bacterium]
Length = 322
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 25/218 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA F +AH GQ RK+GDPYL H + ILA + K V ++ AG+LHD ++D
Sbjct: 23 INKAYVFTAKAHAGQMRKSGDPYLIHPLEVAHILADM-----KLDVSSIAAGMLHDTLED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I++ FG ++A+LV GV+++S + N T +A + R M++
Sbjct: 78 TQTTKKDIQDLFGADIAELVDGVTKIS----------KFKFN--TQEEHQAENFRKMIMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADR HN+ T+ +P K ++AQETL I+ LASRLG+ LK +LEDL
Sbjct: 126 MSRDIRVILIKLADRFHNLSTLQFMPEEKQMSIAQETLDIYSPLASRLGIDWLKLQLEDL 185
Query: 284 CFAVL------QMRADLASMWSPRNRVGYSRRITTIVS 315
F L Q++ + + +NR Y R+ VS
Sbjct: 186 SFRFLKPDVYRQIQKQMVRL--KKNREEYMARVEKAVS 221
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 404 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCC 463
TS IP ++ RLK Y I+ KM+R ++ +V+D A R++ + I+ C
Sbjct: 225 TSSIP--HFVIAGRLKHAYGIYRKMQRLNISFEQVHDLLAFRIITNN---------IEEC 273
Query: 464 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
Y L ++H +W P+ G F DY+ PK + YQSLHT V DG +E QI
Sbjct: 274 YEALGLLHSMWKPVPGRFKDYVAMPKANNYQSLHTTVICLDGERVEFQI 322
>gi|404413602|ref|YP_006699189.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
gi|404239301|emb|CBY60702.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
Length = 738
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKNAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|254239285|ref|ZP_04932608.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
gi|126171216|gb|EAZ56727.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
Length = 747
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 518 HEYAEHGLAAHWLYKETGNKLQS 540
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|296139654|ref|YP_003646897.1| (p)ppGpp synthetase I SpoT/RelA [Tsukamurella paurometabola DSM
20162]
gi|296027788|gb|ADG78558.1| (p)ppGpp synthetase I, SpoT/RelA [Tsukamurella paurometabola DSM
20162]
Length = 779
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +++A A++ H Q RK+GDPY+TH + ILA L T+VA
Sbjct: 65 YPKADVALIERAYDVAEQRHATQMRKSGDPYITHPLAVATILAEL-----GMDTTTLVAA 119
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + EFG EVA LV GV++L + LG EA
Sbjct: 120 LLHDTVEDTGYSLDQLTAEFGSEVAHLVDGVTKLDKV---------------ALGSAAEA 164
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 165 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKAKETLEVIAPLAHRLGMA 224
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 225 TVKWELEDLSFAILH 239
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH L
Sbjct: 281 VQGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGVVHSL 331
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH AE G+AAHW YKE
Sbjct: 332 WQPMAGRFKDYIAQPRYGVYQSLHTTVIGPEGKPLEVQIRTRDMHRTAEFGIAAHWRYKE 391
Query: 534 T 534
T
Sbjct: 392 T 392
>gi|87121090|ref|ZP_01076981.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Marinomonas sp. MED121]
gi|86163582|gb|EAQ64856.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Marinomonas sp. MED121]
Length = 703
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 122/195 (62%), Gaps = 24/195 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A +A++AH GQ RK+G+PY+ H + +ILA + D +VA +LHDV++D
Sbjct: 23 IKRAYYYAEQAHDGQRRKSGEPYVIHPLAVAQILAEF-----RMDCDGLVAALLHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI---NQLLRRHRRINVNQGTLGHEEANDLRVM 220
S ++ E+FG+ VA LV GVS+L+++ NQL ++A++ + M
Sbjct: 78 TGISREALTEQFGEGVAALVDGVSKLTHLEFNNQL---------------EKQAHNFQKM 122
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
+ M DD RV+L+KLADRLHNMRT+ ++P K R +A+ETL I+ +A+RLG++ ++ L
Sbjct: 123 AMAMADDIRVILVKLADRLHNMRTLDSMPAHKKRRIARETLDIYAPIANRLGMYNVRINL 182
Query: 281 EDLCF-AVLQMRADL 294
E L F A MRA +
Sbjct: 183 ESLAFQAYYPMRARM 197
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E +S R K +YSI+ KM++K + ++ D +R++ DK+ + CY +L +
Sbjct: 229 IESDISIREKHIYSIYQKMQKKRRSLGEIMDVVGVRIIT-DKHDS--------CYRILGV 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ P++G F DYI PK +GYQSLHT V G +G +EVQIRTQ+M+ A++G+AAHW
Sbjct: 280 IHSLFKPVEGRFKDYIAVPKSNGYQSLHTTVVGTNGLPMEVQIRTQEMNMVADNGIAAHW 339
Query: 530 LYKET 534
YK T
Sbjct: 340 AYKTT 344
>gi|89100794|ref|ZP_01173647.1| GTP pyrophosphokinase [Bacillus sp. NRRL B-14911]
gi|89084497|gb|EAR63645.1| GTP pyrophosphokinase [Bacillus sp. NRRL B-14911]
Length = 731
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLI--PSSGKRAVDTVVAGILHDVV 161
V+KA FAK AH Q+RK+G+PY+ H I ILA L PS TV AG LHDVV
Sbjct: 28 VRKAYEFAKHAHREQYRKSGEPYIIHPIQVAGILADLEMDPS-------TVAAGFLHDVV 80
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L I E F EVA LV GV++L I + ++A + R M
Sbjct: 81 EDTEVTLADISEAFNPEVAMLVDGVTKLGKIKY------------KSQEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELE
Sbjct: 129 VAMAQDIRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVLQ 289
D L
Sbjct: 189 DTALRYLN 196
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H
Sbjct: 238 LSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGIIHTC 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGDPLEVQIRTTEMHQIAEFGIAAHWAYKE 348
Query: 534 TGNKLQSISSMDE 546
G + SS +E
Sbjct: 349 -GKTVNEGSSFEE 360
>gi|322515562|ref|ZP_08068543.1| guanosine-3,5-bis 3-pyrophosphohydrolase [Actinobacillus ureae ATCC
25976]
gi|322118365|gb|EFX90631.1| guanosine-3,5-bis 3-pyrophosphohydrolase [Actinobacillus ureae ATCC
25976]
Length = 568
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 121/212 (57%), Gaps = 26/212 (12%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPADKIELVKRAFVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDHEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA++V GVS+L ++L R R+
Sbjct: 66 VMAALLHDVIEDTPYTEEQLAAEFGASVAEIVQGVSKL---DKLKFRTRQ---------E 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ + R M+L M D RVVLIKLADR HNMRT+ L P K R +A+ETL I+ LA RL
Sbjct: 114 AQVENFRKMILAMTKDIRVVLIKLADRTHNMRTLGVLRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFA--------VLQMRADLA 295
G+ LK ELE+LCF VL+M D+A
Sbjct: 174 GIEHLKNELENLCFQAMHPHRYRVLRMAIDMA 205
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LYS++ KMR++D H + D A RVVV + + CY +L
Sbjct: 228 GIKGRVYGREKHLYSLYEKMRQRDQHFHSILDIYAFRVVVEN---------LDNCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHSLYKPRPYKIRDYIAVPKSNGYQSLHTSMIGHKGVPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKETGNKLQSISSMDE----SDIEASSSLSKDTDDHNPLDTDLF 570
W Y E S+ + S IE S + + +DLF
Sbjct: 339 WRYTEDQTTATSVQQKAQQWLRSIIELQQSAGNSDEFIENVKSDLF 384
>gi|325266683|ref|ZP_08133360.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
gi|324982126|gb|EGC17761.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
Length = 726
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K +YSI+ KM +K + +YD RA+RV+V + CYS+L
Sbjct: 242 GIECDVAGRPKHIYSIYRKMVKKKLDFDGLYDIRAVRVLVN---------TVPECYSVLG 292
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 293 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTNEMHEFNEFGVAAH 352
Query: 529 WLYKETGN 536
W YKE G
Sbjct: 353 WRYKEGGK 360
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 104 VQKAIAFAKRAH-HGQFRKTGDPYLTHCIHTGRILAM--LIPSSGKRAVDTVVAGILHDV 160
+Q A+ A++ + G +P L H + ++A L+P S V A +L D
Sbjct: 26 LQAALQLAEQIYPAGAATTAQEPLLPHLLQAALMVADMDLLPES-------VAATVLTDA 78
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
A + E G VA LV G+ + + + + +A +R M
Sbjct: 79 PAHADNWEERVTEACGGAVANLVKGIDEVQKLTHFAKVDSLATPEERA---AQAETMRKM 135
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKA 278
LL MV D RVVLIKLA R M+ + P PAK RA+A+ETL I+ LA+RLG+W LK
Sbjct: 136 LLAMVSDIRVVLIKLALRTRTMQFLSQTPDSPAK-RALAKETLDIFAPLANRLGVWQLKW 194
Query: 279 ELEDLCF 285
+LEDL F
Sbjct: 195 QLEDLGF 201
>gi|431801220|ref|YP_007228123.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
gi|430791985|gb|AGA72180.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
Length = 746
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|33354143|dbj|BAC81141.1| plastid (p)ppGpp synthase [Oryza sativa Japonica Group]
Length = 728
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 24/216 (11%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSG--KRAVDTVV-- 153
IF++E V K A++AH GQ R +GDPYL HC+ T +LA + +S + V+T V
Sbjct: 205 IFHEELVVKTFFEAEKAHRGQTRASGDPYLQHCVETAVLLANIGANSTVLQHCVETAVLL 264
Query: 154 -----------AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
AG+LHD +DD+ I FG VA LV GVS+LS++++L R
Sbjct: 265 ANIGANSTVVSAGLLHDTIDDSFIDYDHIFHMFGAGVADLVEGVSKLSHLSKLARD---- 320
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
N EA+ L MLL M D R VLIKLADR+HNM+T+ ALP K + A+ET+
Sbjct: 321 --NNTASRIVEADRLHTMLLAMAD-ARAVLIKLADRVHNMKTLEALPLGKQQRFAKETME 377
Query: 263 IWCSLASRLGLWALKAELEDLCFAVL--QMRADLAS 296
I+ LA+RLG+ + K +LE+LCF L + DL+S
Sbjct: 378 IFVPLANRLGIASWKDQLENLCFKHLNPEEHKDLSS 413
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
LS R KSLYSI +KM +K++ + +++D LR+V + CY LD+VH
Sbjct: 444 NLSGRHKSLYSIHNKMLKKNLTMDEIHDIHGLRLVFEKEED---------CYRALDVVHE 494
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW + G F DYI PK +GY+SLHT V + EVQIRT++MH AE+G AAHW YK
Sbjct: 495 LWPQVPGRFKDYISRPKLNGYRSLHTVVMSENVHPFEVQIRTKEMHLQAEYGFAAHWRYK 554
Query: 533 E 533
E
Sbjct: 555 E 555
>gi|407280047|ref|ZP_11108517.1| gtp diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-diphosphatase [Rhodococcus sp. P14]
Length = 743
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + ++Q+A A+ H Q RK+GDPY+TH + ILA L + T++A
Sbjct: 32 YPKADLSELQRAYDVAEERHASQKRKSGDPYITHPLAVATILAELGMDT-----TTLIAA 86
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + EFG+EVA LV GV++L V GT E
Sbjct: 87 LLHDTVEDTGYSLEQLTAEFGEEVAHLVDGVTKLD------------KVVLGTAA--EGE 132
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 133 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 192
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 193 VKWELEDLSFAILH 206
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 244 IEATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCNE---------IRDCYAAVGV 294
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT++MH AE G+AAHW
Sbjct: 295 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTREMHRTAEFGIAAHW 354
Query: 530 LYKETGNK 537
YKET K
Sbjct: 355 RYKETKGK 362
>gi|227890126|ref|ZP_04007931.1| GTP diphosphokinase [Lactobacillus johnsonii ATCC 33200]
gi|227849301|gb|EEJ59387.1| GTP diphosphokinase [Lactobacillus johnsonii ATCC 33200]
Length = 749
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK+AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKKAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIKYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVKDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|291286459|ref|YP_003503275.1| (p)ppGpp synthetase I SpoT/RelA [Denitrovibrio acetiphilus DSM
12809]
gi|290883619|gb|ADD67319.1| (p)ppGpp synthetase I, SpoT/RelA [Denitrovibrio acetiphilus DSM
12809]
Length = 718
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V A +A + H GQ RK+G+PYL+H ++ ILA + VDTVV G+LHD V
Sbjct: 27 DRVHTAYVYAAQKHRGQLRKSGEPYLSHPLNVAYILAQM-----NMDVDTVVGGLLHDTV 81
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + I + FG++VA +V GV+++ I ++ + +A + R ML
Sbjct: 82 EDTDATFDEISKLFGEDVAFIVDGVTKIGKIEFKSQQEK------------QAENFRKML 129
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ L K R +A+ET+ I+ +A R+G+ +K ELE
Sbjct: 130 ISMSKDVRVILIKLADRLHNMRTLDYLHDEKKRRIARETMDIYAPMAHRMGIAWIKWELE 189
Query: 282 DLCFAVLQ 289
D CF +L+
Sbjct: 190 DRCFHILE 197
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +++ R K +SI++KM++K V ++YD ALRV+V D + CY+++
Sbjct: 234 NIKASVTGRPKHFFSIYNKMKKKKVSFEEIYDLLALRVLVDD---------VATCYAVMG 284
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H +W PI F DYI K + YQSLHT + G +E QIRT +MH+ AE G+AAH
Sbjct: 285 ILHNIWNPIQHRFKDYIAMQKTNLYQSLHTTIITKKGVTVEFQIRTHEMHKVAEEGIAAH 344
Query: 529 WLYKE 533
W YKE
Sbjct: 345 WKYKE 349
>gi|120403572|ref|YP_953401.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium vanbaalenii PYR-1]
gi|119956390|gb|ABM13395.1| (p)ppGpp synthetase I, SpoT/RelA [Mycobacterium vanbaalenii PYR-1]
Length = 788
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +QKA A++ H Q RK+GDPY+TH + ILA L T++A
Sbjct: 73 YPKADLTLLQKAYEVAEQRHADQLRKSGDPYITHPLAVANILAEL-----GMDTTTLIAA 127
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ +EFG EV LV GV++L V GT E
Sbjct: 128 LLHDTVEDTGYTLEALTQEFGTEVGHLVDGVTKLD------------KVALGTAA--EGE 173
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 174 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 233
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 234 VKWELEDLSFAILH 247
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 285 INATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 335
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 336 VHSLWQPIAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTIDMHKTAEYGIAAHW 395
Query: 530 LYKETGNK 537
YKE +
Sbjct: 396 RYKEAKGR 403
>gi|452960672|gb|EME65987.1| gtp diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-diphosphatase [Rhodococcus ruber BKS 20-38]
Length = 724
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + ++Q+A A+ H Q RK+GDPY+TH + ILA L + T++A
Sbjct: 13 YPKADLSELQRAYDVAEERHASQKRKSGDPYITHPLAVATILAELGMDT-----TTLIAA 67
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + EFG+EVA LV GV++L V GT E
Sbjct: 68 LLHDTVEDTGYSLEQLTAEFGEEVAHLVDGVTKLD------------KVVLGTAA--EGE 113
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 114 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 173
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 174 VKWELEDLSFAILH 187
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T+ R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 225 IEATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCNE---------IRDCYAAVGV 275
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT++MH AE G+AAHW
Sbjct: 276 VHSLWQPMAGRFKDYIAQPRFGVYQSLHTTVIGPEGKPLEVQIRTREMHRTAEFGIAAHW 335
Query: 530 LYKETGNK 537
YKET K
Sbjct: 336 RYKETKGK 343
>gi|429727583|ref|ZP_19262348.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
gi|429151973|gb|EKX94811.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
Length = 739
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V +A A++AH GQ RK+G+PY+ H + ILA + + +DT+ GILHDVV
Sbjct: 23 DKVVRAYELAEKAHDGQVRKSGEPYIIHPLAVANILADM-----QLDMDTICGGILHDVV 77
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D IEE FG +VA LV GV++L I + T ++ +LR M
Sbjct: 78 EDTEYEESDIEEMFGKDVAVLVDGVTKLGKIQYM------------TKEESQSENLRKMF 125
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ + KAR A+ETL I+ +A RLG+ +K ELE
Sbjct: 126 LAMAKDMRVILIKLADRLHNMRTLEYMDSNKARYKARETLDIYAGIAHRLGIQTIKWELE 185
Query: 282 DLCFAVL 288
DL L
Sbjct: 186 DLSLRFL 192
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 85/131 (64%), Gaps = 10/131 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW P
Sbjct: 238 RPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWKP 288
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 289 MPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-GV 347
Query: 537 KLQSISSMDES 547
+ +S++DE
Sbjct: 348 TDKDVSALDEK 358
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 728 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 787
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 788 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
>gi|339486235|ref|YP_004700763.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida S16]
gi|338837078|gb|AEJ11883.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida S16]
Length = 773
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 274 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 321
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 322 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 379
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 380 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 411
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 110 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 164
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 165 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 224
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 225 HRLGIGHIKWELEDLSFRYLE 245
>gi|229591916|ref|YP_002874035.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
gi|229363782|emb|CAY51208.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + +L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIALPIVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|325274863|ref|ZP_08140878.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
gi|324100011|gb|EGB97842.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
Length = 746
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMKRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|294101598|ref|YP_003553456.1| (p)ppGpp synthetase I SpoT/RelA [Aminobacterium colombiense DSM
12261]
gi|293616578|gb|ADE56732.1| (p)ppGpp synthetase I, SpoT/RelA [Aminobacterium colombiense DSM
12261]
Length = 734
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM RK + + ++YD ALRVVV D + CY++L IVH +
Sbjct: 251 VKGRAKHFYSIYEKMNRKKLPVEQLYDLLALRVVVDD---------VAACYTVLGIVHTI 301
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI G+FDDYI NPK + YQSLHT V GP G LEVQIR+ +M+ AE+G+AAHW YKE
Sbjct: 302 WKPIPGQFDDYIANPKTNMYQSLHTTVVGPTGEPLEVQIRSAEMNRLAEYGIAAHWRYKE 361
Query: 534 TGNKLQSISS 543
GN L + +
Sbjct: 362 GGNVLDDLDA 371
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++ +A A AH Q R +GDPY+ H I+ ILA + + + T++A +LHDV+
Sbjct: 39 KKLGEAFVMAADAHGEQKRSSGDPYVVHSINVASILADM-----QLDLVTLIAALLHDVL 93
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S ++ FGD+V LV GV++L + + +A +LR M
Sbjct: 94 EDTALSAEKVKSAFGDDVITLVDGVTKLG------------KLPFKSFEDYQAENLRKMF 141
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RVVLIKLADRLHNMRT+ AL K +A+ETL I+ LA RLG++ +K LE
Sbjct: 142 VVMAKDIRVVLIKLADRLHNMRTLGALRRDKQLRIAKETLEIYAPLAHRLGIYQVKRGLE 201
Query: 282 DLCF 285
DL F
Sbjct: 202 DLAF 205
>gi|441517659|ref|ZP_20999393.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455533|dbj|GAC57354.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 768
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A H GQFRK+GDPY+TH + ILA L G + T+VA
Sbjct: 53 YPKADVAVLQRAYDVAATHHEGQFRKSGDPYITHPLAVATILADL----GMDTI-TLVAA 107
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + +FG EVA LV GV++L + LG E
Sbjct: 108 LLHDTVEDTGYALEQLSSDFGPEVAHLVDGVTKLDKV---------------ALGSAAEG 152
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 153 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 212
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 213 TVKWELEDLAFAILH 227
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 13/141 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 265 ISATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGMRILCDE---------VRDCYAAVGV 315
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 316 VHSLWHPMAGRFKDYIAQPSYGVYQSLHTTVIGPEGKPLEVQIRTHDMHRTAEFGIAAHW 375
Query: 530 LYKE----TGNKLQSISSMDE 546
YKE G K ++ +D+
Sbjct: 376 RYKEGRKGKGRKATDVAEVDD 396
>gi|410092308|ref|ZP_11288837.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
gi|409760333|gb|EKN45487.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 14/142 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
LE ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LENELLAT-----GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNK 537
MHE AE G+ AHW YK T K
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVK 374
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 8/194 (4%)
Query: 98 IFNDEQVQKAIAFAKRAHHG-QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
+ + E ++KA FA++A + K T TG +A ++ + K D++VA +
Sbjct: 31 VLDREVMKKACEFARQAEQNDKALKNHWADGTSSFQTGLEIAEIL-ADLKLDQDSLVAAV 89
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EAN 215
++ V + L +E++FG+ VAKL+ GV R++ I+ L + + LG + +
Sbjct: 90 IYRGVREGVIPLPDVEQQFGETVAKLIDGVLRMAAISASLSPRQSL-----VLGSQAQVE 144
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+
Sbjct: 145 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGH 204
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL F L+
Sbjct: 205 IKWELEDLSFRYLE 218
>gi|33152904|ref|NP_874257.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Haemophilus ducreyi 35000HP]
gi|33149129|gb|AAP96646.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase
[Haemophilus ducreyi 35000HP]
Length = 568
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 114/196 (58%), Gaps = 17/196 (8%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T P E +Q+A A+ AH GQ R +G+PY+TH + I+A + K + ++
Sbjct: 13 TYLPTDKIEWIQRAFVVARDAHEGQTRSSGEPYITHPVAVATIIAEM-----KLDHEAIM 67
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHDV++D + + EFG VAK+V GVS+L ++L R R+ +
Sbjct: 68 AALLHDVIEDTPYTEEELAAEFGSNVAKIVQGVSKL---DKLKFRTRQ---------EAQ 115
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+ +A RLG+
Sbjct: 116 VENFRKMILAMTKDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYSPIAHRLGI 175
Query: 274 WALKAELEDLCFAVLQ 289
LK ELE+LCF +
Sbjct: 176 EHLKNELENLCFQAMH 191
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K LY+++ KMR++D H + D A R+VV +I CY +L
Sbjct: 228 GIKGRVYGREKHLYALYEKMRQRDQHFHSILDIYAFRIVVN---------SIDNCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P + DYI PK +GYQSLHT++ G G +EVQIRT+ M AE G+AAH
Sbjct: 279 QMHALYKPRPYQIRDYIAVPKSNGYQSLHTSMIGHKGMPIEVQIRTEDMDLMAELGVAAH 338
Query: 529 WLYKETGNKLQSISSMDE----SDIEASSSLSKDTDDHNPLDTDLF 570
W Y E + S+ + S +E S + + +DLF
Sbjct: 339 WRYSEDQTQTTSVQQKAQQWLRSIVELQQSAGNSDEFIENVKSDLF 384
>gi|225376526|ref|ZP_03753747.1| hypothetical protein ROSEINA2194_02168 [Roseburia inulinivorans DSM
16841]
gi|225211625|gb|EEG93979.1| hypothetical protein ROSEINA2194_02168 [Roseburia inulinivorans DSM
16841]
Length = 768
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 18/203 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH GQ RK+G+PY+ H + ILA L + +T+VAG+LHDVV+D
Sbjct: 52 IEKAYNIAYEAHKGQVRKSGEPYIIHPLCVAIILAEL-----ELDKETIVAGLLHDVVED 106
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I++EFG EVA LV GV++L QL ++ V +A +LR M L
Sbjct: 107 TVMTDEEIKQEFGAEVALLVDGVTKLG---QLSYDADKVEV--------QAENLRKMFLA 155
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 156 MAKDIRVILIKLADRLHNMRTLKYMTPEKQKEKARETMDIYAPIAQRLGISKIKIELDDL 215
Query: 284 CFAVLQMRA--DLASMWSPRNRV 304
L+ A DL + R V
Sbjct: 216 SLKYLEPEAYYDLVHQIAQRKSV 238
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +SI+ KM+ +D + ++YD A+R++V +++ CY+ L
Sbjct: 258 GIPAQIDGRAKHFFSIYKKMKNQDKTLDQIYDLFAIRIIVD---------SVKDCYAALG 308
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAH
Sbjct: 309 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGPTGQPFEIQIRTYEMHRTAEYGIAAH 368
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 369 WKYKEASN 376
>gi|111023852|ref|YP_706824.1| GTP diphosphokinase [Rhodococcus jostii RHA1]
gi|110823382|gb|ABG98666.1| GTP diphosphokinase [Rhodococcus jostii RHA1]
Length = 791
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 80 YPKADLALLQRAYDVAEERHASQRRKSGDPYITHPLAVASILAELGMDT-----TTLVAA 134
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +EFG+EVA LV GV++L + LG+ E
Sbjct: 135 LLHDTVEDTGYSLEQLTDEFGEEVAHLVDGVTKLDKV---------------VLGNAAEG 179
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 239
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 TVKWELEDLSFAILH 254
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 292 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 342
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 343 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTHDMHRTAEFGIAAHW 402
Query: 530 LYKETGNK 537
YKE+ +
Sbjct: 403 RYKESKGR 410
>gi|38233953|ref|NP_939720.1| GTP pyrophosphokinase [Corynebacterium diphtheriae NCTC 13129]
gi|376293379|ref|YP_005165053.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC02]
gi|38200214|emb|CAE49898.1| GTP pyrophosphokinase [Corynebacterium diphtheriae]
gi|372110702|gb|AEX76762.1| GTP pyrophosphokinase [Corynebacterium diphtheriae HC02]
Length = 759
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHDGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+LV GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLVDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|408480593|ref|ZP_11186812.1| GTP pyrophosphokinase, partial [Pseudomonas sp. R81]
Length = 599
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ--MRADLASMWSPRNRVGYSRRITTIVSS 316
RLG+ +K ELEDL F L+ +A++ R R+ R IT +++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQIATLLHER-RLDRERFITDVMNQ 246
>gi|330826152|ref|YP_004389455.1| (p)ppGpp synthetase I SpoT/RelA [Alicycliphilus denitrificans K601]
gi|329311524|gb|AEB85939.1| (p)ppGpp synthetase I, SpoT/RelA [Alicycliphilus denitrificans
K601]
Length = 748
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 530 LYKETGNK 537
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V C
Sbjct: 45 RARAFAEPLLIGETLETGENTLAHADAVAAILKNLGGSETMQAAAYLVY---------TC 95
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
E L EE FG A L ++L + QL R ++ Q + ++R ML
Sbjct: 96 EHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKML 154
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 155 LAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 214
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 215 DLAFRFLE 222
>gi|397737388|ref|ZP_10504060.1| GTP 3'-pyrophosphotransferase [Rhodococcus sp. JVH1]
gi|396926827|gb|EJI94064.1| GTP 3'-pyrophosphotransferase [Rhodococcus sp. JVH1]
Length = 791
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 80 YPKADLALLQRAYDVAEERHASQRRKSGDPYITHPLAVASILAELGMDT-----TTLVAA 134
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +EFG+EVA LV GV++L + LG+ E
Sbjct: 135 LLHDTVEDTGYSLEQLTDEFGEEVAHLVDGVTKLDKV---------------VLGNAAEG 179
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 239
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 TVKWELEDLSFAILH 254
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 292 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 342
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 343 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTHDMHRTAEFGIAAHW 402
Query: 530 LYKETGNK 537
YKET +
Sbjct: 403 RYKETKGR 410
>gi|319762029|ref|YP_004125966.1| rela/spot family protein [Alicycliphilus denitrificans BC]
gi|317116590|gb|ADU99078.1| RelA/SpoT family protein [Alicycliphilus denitrificans BC]
Length = 748
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 530 LYKETGNK 537
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ G+ +TG+ L H IL L S +A +V C
Sbjct: 45 RARAFAEPLLIGETLETGENTLAHADAVAAILKNLGGSETMQAAAYLVY---------TC 95
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
E L EE FG A L ++L + QL R ++ Q + ++R ML
Sbjct: 96 EHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKML 154
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K ELE
Sbjct: 155 LAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWELE 214
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 215 DLAFRFLE 222
>gi|421496388|ref|ZP_15943620.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Aeromonas media WS]
gi|407184652|gb|EKE58477.1| guanosine-3',5'-bis 3'-pyrophosphohydrolase [Aeromonas media WS]
Length = 705
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 141/245 (57%), Gaps = 18/245 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLRQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E FG+ VA+LV+GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTPVTKDDLAELFGNAVAELVSGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
+L F A+ MR+ + R R I +I S R A D + ++++ S+
Sbjct: 184 ELGFEALYPMRSRVLRESVRRARGNRREIIDSIQSEIEGRLREAGIDAQVSGREKNLFSI 243
Query: 341 KDLLE 345
+ +E
Sbjct: 244 YNKME 248
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIDAQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVRVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKSNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|440736805|ref|ZP_20916390.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|447917681|ref|YP_007398249.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
gi|440382737|gb|ELQ19229.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|445201544|gb|AGE26753.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIELATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|384103695|ref|ZP_10004661.1| GTP diphosphokinase [Rhodococcus imtechensis RKJ300]
gi|419965699|ref|ZP_14481639.1| GTP diphosphokinase [Rhodococcus opacus M213]
gi|424852310|ref|ZP_18276707.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus opacus PD630]
gi|432337532|ref|ZP_19588954.1| GTP diphosphokinase [Rhodococcus wratislaviensis IFP 2016]
gi|356666975|gb|EHI47046.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus opacus PD630]
gi|383838765|gb|EID78133.1| GTP diphosphokinase [Rhodococcus imtechensis RKJ300]
gi|414568892|gb|EKT79645.1| GTP diphosphokinase [Rhodococcus opacus M213]
gi|430775550|gb|ELB91051.1| GTP diphosphokinase [Rhodococcus wratislaviensis IFP 2016]
Length = 791
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 80 YPKADLALLQRAYDVAEERHASQRRKSGDPYITHPLAVASILAELGMDT-----TTLVAA 134
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +EFG+EVA LV GV++L + LG+ E
Sbjct: 135 LLHDTVEDTGYSLEQLTDEFGEEVAHLVDGVTKLDKV---------------VLGNAAEG 179
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 239
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 TVKWELEDLSFAILH 254
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 292 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 342
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 343 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTHDMHRTAEFGIAAHW 402
Query: 530 LYKETGNK 537
YKET +
Sbjct: 403 RYKETKGR 410
>gi|395798927|ref|ZP_10478210.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
gi|395337161|gb|EJF69019.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L +I + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTISQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|334702480|ref|ZP_08518346.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) [Aeromonas caviae Ae398]
Length = 705
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 140/245 (57%), Gaps = 18/245 (7%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLRQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG VA+LV+GVS+L ++L R R+ + + R M+
Sbjct: 76 EDTPVTKDDLAEQFGKAVAELVSGVSKL---DKLKFRDRK---------EAQVENFRKMM 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
+L F A+ MR+ + R R I +I S R A D + ++++ S+
Sbjct: 184 ELGFEALYPMRSRVLRESVRRARGNRREIIDSIQSEIEGRLREAGIDAQVSGREKNLFSI 243
Query: 341 KDLLE 345
+ +E
Sbjct: 244 YNKME 248
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIDAQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVRVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|153941234|ref|YP_001392337.1| GTP pyrophosphokinase [Clostridium botulinum F str. Langeland]
gi|170754462|ref|YP_001782694.1| GTP pyrophosphokinase [Clostridium botulinum B1 str. Okra]
gi|384463312|ref|YP_005675907.1| GTP pyrophosphokinase [Clostridium botulinum F str. 230613]
gi|429246540|ref|ZP_19209858.1| GTP pyrophosphokinase [Clostridium botulinum CFSAN001628]
gi|152937130|gb|ABS42628.1| GTP pyrophosphokinase [Clostridium botulinum F str. Langeland]
gi|169119674|gb|ACA43510.1| putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Clostridium botulinum B1 str.
Okra]
gi|295320329|gb|ADG00707.1| GTP pyrophosphokinase [Clostridium botulinum F str. 230613]
gi|428756456|gb|EKX79010.1| GTP pyrophosphokinase [Clostridium botulinum CFSAN001628]
Length = 723
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLAF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|77361702|ref|YP_341277.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
haloplanktis TAC125]
gi|76876613|emb|CAI87835.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
haloplanktis TAC125]
Length = 702
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 115/192 (59%), Gaps = 17/192 (8%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
P + E VQKA A+ AH GQ R +G+PY+TH + +ILA + +T++A +
Sbjct: 16 PAADVELVQKAYVVAREAHEGQTRSSGEPYITHPVEVSQILASMHLDH-----ETLMAAL 70
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 216
+HDV++D S + E FGD VA+LV GVS+L ++ ++ +A +
Sbjct: 71 MHDVIEDTNFSQQDLAEIFGDTVAELVEGVSKLDKLSFKDKKEF------------QAEN 118
Query: 217 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 276
R M++ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +
Sbjct: 119 YRKMIMAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYAPIANRLGIHDI 178
Query: 277 KAELEDLCFAVL 288
K ELEDL F L
Sbjct: 179 KNELEDLGFQAL 190
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ T+S R K +YSI+ KM K++ ++V D A R+ V ++ CY +L
Sbjct: 228 GIKATVSGREKHIYSIYKKMLNKELLFNEVMDIYAFRIAV---------ESMDICYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+ H L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT M A+ G+AAH
Sbjct: 279 VAHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHDMDHMADKGVAAH 338
Query: 529 WLYKETGN 536
W+YK+ +
Sbjct: 339 WMYKKAND 346
>gi|304310589|ref|YP_003810187.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
gi|301796322|emb|CBL44530.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
Length = 755
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI+ KM+RK + ++VYD RA+RV+V P I+ CY+ L
Sbjct: 257 GIEAEVKGRAKHIYSIWRKMKRKSIDFYQVYDVRAVRVLV---------PEIRDCYAALG 307
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H LW I EFDDYI PK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 308 IAHNLWQHIPREFDDYIATPKENGYRSLHTAVLGPEGKVLEVQIRTFSMHEEAELGVCAH 367
Query: 529 WLYKETGNK 537
W YKE N+
Sbjct: 368 WRYKEGNNQ 376
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++ A +++ V + +L S+ + G +AKL+ GV R++ I+ +++ + Q +
Sbjct: 84 DSLKAAVIYRAVREGQITLESVRKTAGPGIAKLIEGVLRMAAISVATNPEKKVVLGQSS- 142
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
++ ++LR ML+ M+DD RV LIKLA+R +R + P AK + VA+E I+ LA
Sbjct: 143 --DQLDNLRKMLIAMIDDVRVALIKLAERTCAIRAVKDAPDAKRQRVAREVFDIYAPLAH 200
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F LQ
Sbjct: 201 RLGIGHIKWELEDLAFRYLQ 220
>gi|421139488|ref|ZP_15599527.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
gi|404509404|gb|EKA23335.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|395500048|ref|ZP_10431627.1| GTP pyrophosphokinase [Pseudomonas sp. PAMC 25886]
Length = 747
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|392542311|ref|ZP_10289448.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
piscicida JCM 20779]
Length = 700
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 23/207 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA A+ AH GQ R +G+PY+TH + +ILA S + +T++A ++HDV++D
Sbjct: 23 VQKAYVVAREAHEGQTRSSGEPYITHPVEVTQILA-----SMRLDHETLMAALMHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + E FGD VA+LV GVS+L ++L + ++ +A + R M++
Sbjct: 78 TDFSQDDLAEIFGDTVAELVEGVSKL---DKLSFKDKK---------EFQAENYRKMIMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ +A+RLG+ +K ELEDL
Sbjct: 126 MTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIYAPIANRLGIHDIKNELEDL 185
Query: 284 CFAVL------QMRADLASMWSPRNRV 304
F L +R+++A R V
Sbjct: 186 GFQALYPMRYRALRSEVAKARGNRKEV 212
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K LYSI+ KM K++ ++V D A R+ V + + CY +L
Sbjct: 228 GIQGSVKGREKHLYSIYRKMLNKELMFNEVMDIYAFRINVDN---------LDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+ H L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT M A+ G+AAH
Sbjct: 279 VAHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHDMDHMADKGVAAH 338
Query: 529 WLYKETGN 536
W+YK++G+
Sbjct: 339 WMYKKSGD 346
>gi|121611280|ref|YP_999087.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter eiseniae EF01-2]
gi|121555920|gb|ABM60069.1| (p)ppGpp synthetase I, SpoT/RelA [Verminephrobacter eiseniae
EF01-2]
Length = 736
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 248 ISASVQGRPKHIYSIVRKMRGKALNFDQVFDIRALRVVV---------PTVKDCYAALSW 298
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH+ + PI+ EFDDYI PKP+GYQSLHT V+ +G +E+Q+RTQ MH +AEHG+AAHW
Sbjct: 299 VHQQFKPIEQEFDDYIARPKPNGYQSLHTVVRDDNGKPIEIQLRTQAMHRHAEHGMAAHW 358
Query: 530 LYKETGNK 537
+YKE G+K
Sbjct: 359 VYKEAGSK 366
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A AFA+ G +G+ L H IL + S +A +V +H + E
Sbjct: 38 ARAFAEPLLAGASLDSGENTLAHADAVAAILKGIGGSEAMQAASYLVQACIHL---NKPE 94
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDLRVMLLGMV 225
L I + FG A L + QL+R R+ Q + ++R MLL
Sbjct: 95 EL--ITKTFGANFATLALETT------QLMRVQRQARAAQPVDDPALQTENVRKMLLAFS 146
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RVVL+ LA RL +R A + + +E+L ++ LA+RLG+W +K ELEDLC
Sbjct: 147 RDLRVVLLHLASRLQTLRFHAASKRPVSPGLVRESLQVFAPLANRLGIWQMKWELEDLCL 206
Query: 286 AVLQ 289
L+
Sbjct: 207 RFLE 210
>gi|421836333|ref|ZP_16270846.1| GTP pyrophosphokinase, partial [Clostridium botulinum CFSAN001627]
gi|409741806|gb|EKN41461.1| GTP pyrophosphokinase, partial [Clostridium botulinum CFSAN001627]
Length = 465
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|392552494|ref|ZP_10299631.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
spongiae UST010723-006]
Length = 701
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 114/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E VQKA A+ AH GQ R +G+PY+TH + +ILA + + +T++A ++HDV+
Sbjct: 21 ELVQKAYVVARDAHEGQTRSSGEPYITHPVEVTQILANM-----RLDHETLMAALMHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E FGD VA+LV GVS+L ++ + + +A + R M+
Sbjct: 76 EDTDFSQQDLAEIFGDTVAELVEGVSKLDKLS--FKDQKEF----------QAENYRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGALRPEKRRRIARETLEIFAPIANRLGIHDIKNELE 183
Query: 282 DLCFAVL 288
DL F L
Sbjct: 184 DLGFQAL 190
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+EV +S R K LYSI+ KM K++ ++V D A R+V ++ CY +L
Sbjct: 228 GIEVEVSGREKHLYSIYRKMLNKELMFNEVMDIYAFRIVAN---------SMDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT +M + A+ G+AAH
Sbjct: 279 VVHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHEMDQMADKGVAAH 338
Query: 529 WLYKETGN 536
WLYK+ G+
Sbjct: 339 WLYKKAGD 346
>gi|168181749|ref|ZP_02616413.1| GTP diphosphokinase [Clostridium botulinum Bf]
gi|237796515|ref|YP_002864067.1| GTP pyrophosphokinase [Clostridium botulinum Ba4 str. 657]
gi|182675126|gb|EDT87087.1| GTP diphosphokinase [Clostridium botulinum Bf]
gi|229261873|gb|ACQ52906.1| RelA/SpoT family protein [Clostridium botulinum Ba4 str. 657]
Length = 723
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|168179553|ref|ZP_02614217.1| GTP pyrophosphokinase [Clostridium botulinum NCTC 2916]
gi|182669850|gb|EDT81826.1| GTP pyrophosphokinase [Clostridium botulinum NCTC 2916]
Length = 723
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|423684840|ref|ZP_17659648.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
SR5]
gi|371495887|gb|EHN71481.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
SR5]
Length = 707
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + K T++A +LHDV+
Sbjct: 21 EALRRSYLVAKEAHEGQTRSSGEPYIIHPVAVARILAEM-----KLDHKTLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E+FGD VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTEVSKEELAEQFGDTVAELVDGVSKL---DKLKFRDKK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L++I++KM+ K+ H + D A RV+ + + CY L
Sbjct: 228 GITGRVIGREKNLFAIYNKMKNKEQRFHTIMDIYAFRVITDN---------VDTCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH ++ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A G+AAH
Sbjct: 279 QVHSIYKPRPGRIKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAH 338
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 339 WSYKEGDN 346
>gi|289423171|ref|ZP_06424986.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
gi|289156502|gb|EFD05152.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
Length = 739
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
++V +A A++AH GQ RK+G+PY+ H + ILA + + +DT+ GILHDVV
Sbjct: 23 DKVVRAYELAEKAHDGQVRKSGEPYIIHPLAVANILADM-----QLDMDTICGGILHDVV 77
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D IEE FG +VA LV GV++L I + T ++ +LR M
Sbjct: 78 EDTEYEESDIEEMFGKDVAVLVDGVTKLGKIQYM------------TKEESQSENLRKMF 125
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ + KAR A+ETL I+ +A RLG+ +K ELE
Sbjct: 126 LAMAKDMRVILIKLADRLHNMRTLEYMDSNKARYKARETLDIYAGIAHRLGIQTIKWELE 185
Query: 282 DLCFAVL 288
DL L
Sbjct: 186 DLSLRFL 192
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 85/131 (64%), Gaps = 10/131 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW P
Sbjct: 238 RPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWKP 288
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 289 MPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-GV 347
Query: 537 KLQSISSMDES 547
+ +S++DE
Sbjct: 348 TDKDVSALDEK 358
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 728 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 787
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 788 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
>gi|170758445|ref|YP_001788379.1| GTP pyrophosphokinase [Clostridium botulinum A3 str. Loch Maree]
gi|169405434|gb|ACA53845.1| putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Clostridium botulinum A3 str.
Loch Maree]
Length = 723
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|409201165|ref|ZP_11229368.1| bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Pseudoalteromonas
flavipulchra JG1]
Length = 700
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 23/207 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA A+ AH GQ R +G+PY+TH + +ILA S + +T++A ++HDV++D
Sbjct: 23 VQKAYVVAREAHEGQTRSSGEPYITHPVEVTQILA-----SMRLDHETLMAALMHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + E FGD VA+LV GVS+L ++ ++ +A + R M++
Sbjct: 78 TDFSQDDLAEIFGDTVAELVEGVSKLDKLSFKDKKEF------------QAENYRKMIMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ +A+RLG+ +K ELEDL
Sbjct: 126 MTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIYAPIANRLGIHDIKNELEDL 185
Query: 284 CFAVL------QMRADLASMWSPRNRV 304
F L +R+++A R V
Sbjct: 186 GFQALYPMRYRALRSEVAKARGNRKEV 212
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K LYSI+ KM K++ ++V D A R+ V + + CY +L
Sbjct: 228 GIQGSVKGREKHLYSIYRKMLNKELMFNEVMDIYAFRINVDN---------LDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+ H L+ PI+ F DYI PK +GYQSLHT++ GP G +E+QIRT M A+ G+AAH
Sbjct: 279 VAHNLYKPIETRFKDYIAVPKTNGYQSLHTSLVGPHGIPVEIQIRTHDMDHMADKGVAAH 338
Query: 529 WLYKETGN 536
W+YK++G+
Sbjct: 339 WMYKKSGD 346
>gi|313672627|ref|YP_004050738.1| (p)ppGpp synthetase I SpoT/RelA [Calditerrivibrio nitroreducens DSM
19672]
gi|312939383|gb|ADR18575.1| (p)ppGpp synthetase I, SpoT/RelA [Calditerrivibrio nitroreducens
DSM 19672]
Length = 710
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 114/192 (59%), Gaps = 17/192 (8%)
Query: 98 IFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
I N E++ KA +A + H GQ RK+G+PYL+H ++ ILA + +DTV AGIL
Sbjct: 21 ITNIEKIHKAYVYAAQKHRGQLRKSGEPYLSHPLNVALILANM-----NMDLDTVTAGIL 75
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
HD ++D + + E FG++VA LV GVS++ ++ + + A +
Sbjct: 76 HDTLEDTDATYEELAELFGEDVAFLVDGVSKIG------------KISFKSSEEKMAENF 123
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R ML+ M D RV++IKLADRLHNMRT+ L K + +A+ET+ I+ LA RLG+ +K
Sbjct: 124 RKMLISMSKDVRVIVIKLADRLHNMRTLDYLSEEKKQRIAKETMEIYAPLAHRLGIAWIK 183
Query: 278 AELEDLCFAVLQ 289
ELEDL F +L
Sbjct: 184 WELEDLSFRILN 195
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R K YSI+SKM +K ++YD A+RV+V + CY+ L
Sbjct: 232 NIQAEVTGRPKHFYSIYSKMIKKKTSFDEIYDLLAVRVIVK---------TVSDCYATLG 282
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H LW PI G F DYI PK + YQSLHT V GP+G +E+QIRT++MH AE G+AAH
Sbjct: 283 IIHNLWKPIPGRFKDYIAMPKANMYQSLHTTVVGPNGLNVEIQIRTEEMHRIAEEGIAAH 342
Query: 529 WLYKE 533
W YKE
Sbjct: 343 WKYKE 347
>gi|152998381|ref|YP_001343216.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas sp. MWYL1]
gi|150839305|gb|ABR73281.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas sp. MWYL1]
Length = 705
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 124/193 (64%), Gaps = 18/193 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
+V++A +A++AH GQ RK+G+PY+TH + IL+ L + D + A +LHDV++
Sbjct: 22 KVKRAYYYAEQAHDGQRRKSGEPYVTHPLAVAEILSEL-----RMDCDGLTAALLHDVIE 76
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D S ++ E+FG+ VA LV GVS+L++ L + +I ++A++ + M +
Sbjct: 77 DTGISREALTEQFGEGVAGLVDGVSKLTH----LEFNSQIE--------KQAHNFQKMAM 124
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DD RV+L+KLADRLHNMRT+ A+P K R +A+ETL I+ +A+RLG++ ++ +LE
Sbjct: 125 AMADDIRVILVKLADRLHNMRTLDAMPAHKKRRIARETLDIYAPIANRLGMYNVRVDLES 184
Query: 283 LCF-AVLQMRADL 294
L F A MRA +
Sbjct: 185 LAFQAYYPMRARM 197
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E T+S R K +YSI+ KM +K + ++ D +R+V D++ + CY +L +
Sbjct: 230 IEATISVREKHIYSIYQKMDKKRRSLDEIMDVMGVRIVT-DRHDS--------CYRILGV 280
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI+G F DYI PK +GYQSLHT V G +G +EVQIRT++M A +G+AAHW
Sbjct: 281 IHALFKPIEGRFKDYIAVPKSNGYQSLHTTVLGTNGIPMEVQIRTEEMDLVANNGIAAHW 340
Query: 530 LYKETG 535
YK +G
Sbjct: 341 AYKVSG 346
>gi|259046671|ref|ZP_05737072.1| GTP diphosphokinase [Granulicatella adiacens ATCC 49175]
gi|259036836|gb|EEW38091.1| GTP diphosphokinase [Granulicatella adiacens ATCC 49175]
Length = 744
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KAI FA AH Q RK+G+ Y+ H I ILA L K DT+ G LHDVV+D
Sbjct: 34 IEKAIYFATFAHKEQVRKSGEAYIVHPIQVAGILAEL-----KLDPDTIATGFLHDVVED 88
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S+ IE EFG +VA LV GV++L I + H ++A + R MLL
Sbjct: 89 TGFSIDDIEYEFGKDVAFLVEGVTKLGKIK--YKSH----------AEQQAENHRKMLLA 136
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+++KLADRLHN+RT+ P K R +A+ETL I+ LA RLG+ +K ELED
Sbjct: 137 MANDLRVIMVKLADRLHNLRTLKFHKPEKQRMIAEETLEIYAPLAHRLGMNKIKWELEDT 196
Query: 284 CFAVL 288
L
Sbjct: 197 SLRYL 201
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 81/128 (63%), Gaps = 10/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K +YSI+ KM+ + ++YD A+RV+V +I+ CY++L
Sbjct: 240 IEAVIYGRPKHIYSIYRKMKDQKKQFSEIYDLLAIRVLVD---------SIKDCYAVLGA 290
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQS+HT V GP G +E+QIRT +MH+ AE+G+AAHW
Sbjct: 291 IHTKWKPMPGRFKDYIAIPKANMYQSIHTTVIGPGGRPVEIQIRTFEMHQVAEYGVAAHW 350
Query: 530 LYKETGNK 537
YKE GNK
Sbjct: 351 AYKE-GNK 357
>gi|418045100|ref|ZP_12683196.1| (p)ppGpp synthetase I, SpoT/RelA [Thermotoga maritima MSB8]
gi|351678182|gb|EHA61329.1| (p)ppGpp synthetase I, SpoT/RelA [Thermotoga maritima MSB8]
Length = 714
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 15/185 (8%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA+ H GQ R +G+P++TH + +ILA L V T+VA +LHDVV+D
Sbjct: 36 KAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVD-----VTTLVAALLHDVVEDGE 90
Query: 166 E-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM 224
SL I++EFG EVA++V GV+++S IN + R + ++ ++ M M
Sbjct: 91 NVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQD--------SRKKIETIQKMFFAM 142
Query: 225 VDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
+D RV+ +KLADRLHNMRTI Y P K R A ETL I+ LA +LG++++K+ELEDL
Sbjct: 143 AEDMRVIFVKLADRLHNMRTIHYVQDPEKKRYKAYETLEIYAPLAHKLGIYSIKSELEDL 202
Query: 284 CFAVL 288
F VL
Sbjct: 203 AFKVL 207
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K YSI+ KM+ K ++YD ALRV+V D + CY++L I
Sbjct: 246 IKAIVEGRYKHYYSIWRKMKEKGKKFEEIYDLIALRVIVKD---------VTTCYTVLGI 296
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W P+ G F DYI PK +GY+SLHT V G LE+QIR ++MH AE+GL AHW
Sbjct: 297 VHNIWKPLPGRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHW 356
Query: 530 LYKE 533
+YKE
Sbjct: 357 IYKE 360
>gi|226366288|ref|YP_002784071.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus opacus B4]
gi|226244778|dbj|BAH55126.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus opacus B4]
Length = 791
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 80 YPKADLALLQRAYDVAEERHASQRRKSGDPYITHPLAVASILAELGMDT-----TTLVAA 134
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +EFG+EVA LV GV++L + LG+ E
Sbjct: 135 LLHDTVEDTGYSLEQLTDEFGEEVAHLVDGVTKLDKV---------------VLGNAAEG 179
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 239
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 TVKWELEDLSFAILH 254
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 292 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 342
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT MH AE G+AAHW
Sbjct: 343 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTHDMHRTAEFGIAAHW 402
Query: 530 LYKETGNK 537
YKET +
Sbjct: 403 RYKETKGR 410
>gi|197333966|ref|YP_002154873.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio fischeri
MJ11]
gi|197315456|gb|ACH64903.1| GTP pyrophosphokinase [Vibrio fischeri MJ11]
Length = 707
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + K T++A +LHDV+
Sbjct: 21 EALRRSYLVAKEAHEGQTRSSGEPYIIHPVAVARILAEM-----KLDHKTLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + E+FGD VA+LV GVS+L ++L R ++ +A + R M+
Sbjct: 76 EDTEVSKEELAEQFGDTVAELVDGVSKL---DKLKFRDKK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L++I++KM+ K+ H + D A RV+ + + CY L
Sbjct: 228 GITGRVIGREKNLFAIYNKMKNKEQRFHTIMDIYAFRVITDN---------VDTCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH ++ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A G+AAH
Sbjct: 279 QVHSIYKPRPGRIKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAH 338
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 339 WSYKEGDN 346
>gi|148381010|ref|YP_001255551.1| GTP pyrophosphokinase [Clostridium botulinum A str. ATCC 3502]
gi|153931540|ref|YP_001385381.1| GTP pyrophosphokinase [Clostridium botulinum A str. ATCC 19397]
gi|153936238|ref|YP_001388788.1| GTP pyrophosphokinase [Clostridium botulinum A str. Hall]
gi|226950488|ref|YP_002805579.1| GTP pyrophosphokinase [Clostridium botulinum A2 str. Kyoto]
gi|387819316|ref|YP_005679663.1| GTP pyrophosphokinase [Clostridium botulinum H04402 065]
gi|148290494|emb|CAL84622.1| GTP pyrophosphokinase [Clostridium botulinum A str. ATCC 3502]
gi|152927584|gb|ABS33084.1| putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Clostridium botulinum A str.
ATCC 19397]
gi|152932152|gb|ABS37651.1| putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Clostridium botulinum A str.
Hall]
gi|226842731|gb|ACO85397.1| GTP pyrophosphokinase [Clostridium botulinum A2 str. Kyoto]
gi|322807360|emb|CBZ04934.1| GTP pyrophosphokinase [Clostridium botulinum H04402 065]
Length = 723
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|305681298|ref|ZP_07404105.1| GTP diphosphokinase [Corynebacterium matruchotii ATCC 14266]
gi|305659503|gb|EFM49003.1| GTP diphosphokinase [Corynebacterium matruchotii ATCC 14266]
Length = 763
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A+R H G FRK+GDPY+TH + I A + + T++A
Sbjct: 50 HPKADVELLSRAYDTAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTIIAS 104
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG+EVA+LV GV++L + LG EA
Sbjct: 105 LLHDTVEDTEYSLDDLTNDFGEEVARLVDGVTKLDKV---------------ALGAAAEA 149
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 150 ETIRKMVMAMAQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLDVIAPLAHRLGMS 209
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 210 SVKWELEDLSFAIL 223
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K +SI+ KM + +++D +R++V + N CY+ + +
Sbjct: 262 IDAEVKGRPKHYWSIYQKMVMRGKDFDEIFDLVGIRILVDNLNN---------CYAAIGV 312
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH AE+G+AAHW
Sbjct: 313 VHSLFAAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHVNAEYGIAAHW 372
Query: 530 LYKET 534
YKET
Sbjct: 373 RYKET 377
>gi|229492002|ref|ZP_04385819.1| RelA/SpoT family protein [Rhodococcus erythropolis SK121]
gi|453071000|ref|ZP_21974227.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus qingshengii BKS
20-40]
gi|229321134|gb|EEN86938.1| RelA/SpoT family protein [Rhodococcus erythropolis SK121]
gi|452760083|gb|EME18426.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus qingshengii BKS
20-40]
Length = 803
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L T+VA
Sbjct: 92 YPKADLALLQRAYDVAEDRHSSQRRKSGDPYITHPLAVASILAEL-----GMDTTTLVAA 146
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + ++FGDEVA LV GV++L V GT E
Sbjct: 147 LLHDTVEDTGYSLEELTKDFGDEVAHLVDGVTKLD------------KVVLGTAA--EGE 192
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 193 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 252
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 253 VKWELEDLSFAILH 266
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH L
Sbjct: 308 VEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCEE---------VRDCYAAVGVVHSL 358
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GP+G LEVQIRTQ MH AE G+AAHW YKE
Sbjct: 359 WQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTQDMHRTAEFGIAAHWRYKE 418
Query: 534 TGNK 537
T K
Sbjct: 419 TKGK 422
>gi|256823641|ref|YP_003147604.1| (p)ppGpp synthetase I SpoT/RelA [Kangiella koreensis DSM 16069]
gi|256797180|gb|ACV27836.1| (p)ppGpp synthetase I, SpoT/RelA [Kangiella koreensis DSM 16069]
Length = 705
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 26/201 (12%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A+RAH GQ R +GDPY+TH + ILA L T++A ++HDV++D
Sbjct: 26 IERAYQLAERAHEGQMRSSGDPYITHPVAAAHILADLHLDH-----QTIMAALMHDVIED 80
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + EFG+ VA LV GVS+L+ I+ + +A + R M++
Sbjct: 81 CDVSKQDLSGEFGETVADLVEGVSKLTQIDFQSKEQ------------AQAENFRKMMMA 128
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNM+T+ AL P K R +A+ETL I+ +A+RLG++ LK +LE L
Sbjct: 129 MTQDIRVILIKLADRLHNMQTLGALRPDKRRRIARETLEIYAPIANRLGIYRLKEQLELL 188
Query: 284 CFAVLQMRADLASMWSPRNRV 304
F A+M+ R RV
Sbjct: 189 GF---------ANMYPLRYRV 200
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 9/116 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R KS+YSI+ KMR K +V D A RV+ ++ CY +L +H L+ P
Sbjct: 239 REKSVYSIYKKMRDKVGTFTEVMDIYAFRVITDSED---------SCYRILGQIHNLFKP 289
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
I G F DYI PK +GYQSLHT ++ G +EVQIRT++M + AE+G+AAHWLYK
Sbjct: 290 IPGRFKDYIAIPKANGYQSLHTVLRNKTGMHIEVQIRTEQMDQMAENGVAAHWLYK 345
>gi|333919490|ref|YP_004493071.1| GTP diphosphokinase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481711|gb|AEF40271.1| GTP diphosphokinase [Amycolicicoccus subflavus DQS3-9A1]
Length = 730
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP +Q+A A+ H Q RK+GDPY+TH + ILA L + T++A
Sbjct: 18 YPKAPLATLQRAYDVAESKHSEQVRKSGDPYITHPLAVASILAELGMDT-----TTLIAA 72
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + E+FG+EVA LV GV++L + LG EA
Sbjct: 73 LLHDTVEDTGYSLEQLREDFGEEVAHLVDGVTKLDKV---------------VLGSAAEA 117
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 118 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 177
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 178 TVKWELEDLAFAILH 192
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K +++D +RV+ + G CY+ + +
Sbjct: 230 LNAVVEGRPKHYWSIYQKMIVKGKDFDEIHDLVGIRVLCDEVRG---------CYAAVGV 280
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ F DYI P+ YQSLHT V GP+G LEVQIRT +MH AE+G+AAHW
Sbjct: 281 VHSLWQPMAQRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTHEMHRTAEYGIAAHW 340
Query: 530 LYKETGNK 537
YKET K
Sbjct: 341 RYKETKGK 348
>gi|372489431|ref|YP_005028996.1| RelA/SpoT family (p)ppGpp synthetase [Dechlorosoma suillum PS]
gi|359355984|gb|AEV27155.1| (p)ppGpp synthetase, RelA/SpoT family [Dechlorosoma suillum PS]
Length = 740
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 10/133 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY++L IVH +
Sbjct: 256 IYGRPKHIYSIWNKMRKKGVDFSEVYDIRALRVIVDE---------VKDCYTVLGIVHNI 306
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI EFDDYI NPK + Y+SLHTAV+ PDG +LEVQIRT +MH +AE G+AAHW YKE
Sbjct: 307 WTPIPKEFDDYISNPKGNNYRSLHTAVRCPDGRSLEVQIRTWEMHRHAELGVAAHWRYKE 366
Query: 534 TGNKLQSISSMDE 546
G K S + D+
Sbjct: 367 -GTKHSSEDNYDD 378
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FA+ A+ +G+ L+H + I+A L K D+ A +L V
Sbjct: 33 IREAALFARDAYGDNTLGSGEGILSHALGMALIIAGL-----KLDADSRAAALLFAVATY 87
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ L ++ E FG VA LV G+SRL+ + + R + LR M L
Sbjct: 88 DEKGLETLNERFGGGVAHLVGGISRLNRLRPISRGFVADTTQNPQEMKAQVEVLRKMFLA 147
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELED 282
MV+D RVVL++LA R +R YA P R VA+ETL ++ LA+RLG+W LK ELED
Sbjct: 148 MVEDIRVVLLRLASRTQTLR-YYAAEPDDLRVHVARETLELYSPLANRLGVWELKWELED 206
Query: 283 LCFAVLQ 289
L F +
Sbjct: 207 LSFRFIH 213
>gi|253997766|ref|YP_003049829.1| (p)ppGpp synthetase I SpoT/RelA [Methylovorus glucosetrophus
SIP3-4]
gi|313199830|ref|YP_004038488.1| (p)ppGpp synthetase I SpoT/RelA [Methylovorus sp. MP688]
gi|253984445|gb|ACT49302.1| (p)ppGpp synthetase I, SpoT/RelA [Methylovorus glucosetrophus
SIP3-4]
gi|312439146|gb|ADQ83252.1| (p)ppGpp synthetase I, SpoT/RelA [Methylovorus sp. MP688]
Length = 740
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 108/187 (57%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQV A F+ AH GQ RK+G+PY+TH + ILA L V T+VA +LHDVV
Sbjct: 44 EQVWAAYRFSDMAHTGQLRKSGEPYITHPVSVACILAEL-----HMDVPTLVAALLHDVV 98
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E FG +VA+LV G+S+L + T +A + R ML
Sbjct: 99 EDTGVTTQEVSERFGKQVAELVDGLSKLD------------KIKFSTETEAQAENFRKML 146
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+L+KLADRLHNM T+ + P K R A+ETL I+ +A+RLGL A+ ELE
Sbjct: 147 LAMSQDVRVILVKLADRLHNMSTLGVMTPEKRRRTARETLEIYAPIANRLGLNAIYQELE 206
Query: 282 DLCFAVL 288
DL F L
Sbjct: 207 DLSFKHL 213
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 17/167 (10%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E ++ R K LYSI+ KM K V ++YD R++V D + CY L +
Sbjct: 252 IEAEVTGREKHLYSIYRKMTGKTVTFSQIYDIYGFRIIVKD---------LSSCYLALGV 302
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI G+F DYI PK +GYQSLHT + GP G+ +EVQIR+++MH A+ G+AAHW
Sbjct: 303 LHGLYKPIPGKFKDYIAIPKANGYQSLHTTLFGPFGTPIEVQIRSREMHNIADAGVAAHW 362
Query: 530 LYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
LYK T L + DI++ S+ S + +H DLF
Sbjct: 363 LYKTTDAHLTELQQQTHQWLQRLLDIQSESTDSLEFLEH--FKVDLF 407
>gi|339448283|ref|ZP_08651839.1| (p)ppGpp synthetase I SpoT/RelA [Lactobacillus fructivorans KCTC
3543]
Length = 741
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 118/221 (53%), Gaps = 34/221 (15%)
Query: 100 NDEQ-VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
ND Q ++KA FAK AH Q R +G PY+ H + IL L +T+ AG LH
Sbjct: 23 NDIQMIKKAYKFAKIAHEDQKRASGQPYINHPVEVAGILTDL-----HMDAETITAGFLH 77
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINVNQGTLGHE 212
DVV+D ++G I E FGD V+ +V GVS+LS I QL HR+
Sbjct: 78 DVVEDTGATIGDITELFGDHVSLIVDGVSKLSKIKYKSSKEQLAENHRK----------- 126
Query: 213 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 272
+LL M D RV+++KLADRLHNM T+ AL P K + +AQETL I+ LA RLG
Sbjct: 127 -------LLLAMCKDIRVMIVKLADRLHNMETLDALRPDKQKRIAQETLDIYAPLADRLG 179
Query: 273 LWALKAELEDLCFAVLQ---MRADLASMWSPRN-RVGYSRR 309
+ +K ELEDL L+ + M S RN RV Y R
Sbjct: 180 IGTIKWELEDLSLRYLKPDDYYEIVNLMNSKRNERVAYVNR 220
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 233 GIKGEVYGRPKHIYSIYRKMHDKHKDFKEIYDLLAVRVIV---------KSVKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W P F DYI PKP+ YQSLHT V GP+G LE+QIRT++MH AE+G+AAH
Sbjct: 284 AIHTEWKPFPDRFKDYIAMPKPNMYQSLHTTVVGPEGKPLEIQIRTEEMHRIAEYGVAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|82523943|emb|CAI78665.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[uncultured delta proteobacterium]
Length = 713
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 125/218 (57%), Gaps = 21/218 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA ++ H GQ R +G+PYLTH + ILA + K T+++G+LHD V
Sbjct: 21 EMIKKAYVYSAAVHQGQVRLSGEPYLTHPMEVAGILADM-----KMDAATIISGLLHDTV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D ++ +EEEFG +VA LV+G+++LS I+ + R +A + R M+
Sbjct: 76 EDTLSTVEQVEEEFGKDVAFLVSGLTKLSLISFRSQEER------------QAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R++L++LADR+HNMRT+ P K +A+ET+ ++ LA+RLG+ +K ELE
Sbjct: 124 LAMSSDIRILLVRLADRIHNMRTLQYQPLEKRVYIARETIDVYAPLANRLGINWIKTELE 183
Query: 282 DLCFAVLQMRA----DLASMWSPRNRVGYSRRITTIVS 315
DL F L A + + S +R Y+ + ++S
Sbjct: 184 DLSFQYLSPEAYNELSMRVVQSNESRHRYTEEVKKLIS 221
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K LY I+ KM + + +VYD A RV+ L + CY L +
Sbjct: 229 IEGEVEGRAKHLYGIYKKMHEQHLNFDEVYDLIAFRVI-------LDSDQEKGCYETLSV 281
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GP G LE+QIRT+ MHE+AE G+AAHW
Sbjct: 282 VHSLWKPVPGRFKDYIAMPKANNYQSLHTTVIGPYGERLEIQIRTRAMHEWAEKGIAAHW 341
Query: 530 LYKE 533
YKE
Sbjct: 342 RYKE 345
>gi|375096049|ref|ZP_09742314.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora marina
XMU15]
gi|374656782|gb|EHR51615.1| (p)ppGpp synthetase, RelA/SpoT family [Saccharomonospora marina
XMU15]
Length = 783
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L + T+VA +LHD V+D
Sbjct: 78 LQRAYDVAEELHRHQRRKSGDPYITHPLAVATILAELGMDT-----TTLVAALLHDTVED 132
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL + +FG++VA+LV GV++L V GT EA +R M++
Sbjct: 133 TGYSLERLGSDFGEKVAQLVDGVTKLD------------KVKLGTAA--EAETIRKMVIA 178
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKLADRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 179 MARDPRVLVIKLADRLHNMRTMRFLPPEKQARKAKETLEVLAPLAHRLGMATVKWELEDL 238
Query: 284 CFAVLQ 289
FA+LQ
Sbjct: 239 AFAILQ 244
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI KM + + ++D +R++V D ++ CY+ + +VH L
Sbjct: 286 VEGRPKHYYSIHQKMIVRGRDLDDIHDLVGVRILVED---------VRDCYAAMGVVHAL 336
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GPDG LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 337 WQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTHEMHRTAEYGIAAHWRYKE 396
Query: 534 T 534
+
Sbjct: 397 S 397
>gi|424826931|ref|ZP_18251766.1| GTP pyrophosphokinase [Clostridium sporogenes PA 3679]
gi|365980468|gb|EHN16498.1| GTP pyrophosphokinase [Clostridium sporogenes PA 3679]
Length = 723
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|304413236|ref|ZP_07394709.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Candidatus
Regiella insecticola LSR1]
gi|304284079|gb|EFL92472.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Candidatus
Regiella insecticola LSR1]
Length = 714
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+++++A A+ AH GQ R +G+PY+TH + ILA + + +T++A LHDV+
Sbjct: 33 KRLEQAYCVARDAHQGQARSSGEPYITHPVAVACILAEM-----RLDYETLMAAFLHDVI 87
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E+ FG VA+LV GVS+L ++L R RR +A + R M+
Sbjct: 88 EDTSVTYHDMEQLFGKSVAELVEGVSKL---DKLTFRDRR---------EAQAENFRKMI 135
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+++L P K R +A+ETL I+ LA RLG+ LK ELE
Sbjct: 136 MAMVQDIRVILIKLADRTHNMRTLHSLRPDKRRRIARETLEIYSPLAHRLGIHHLKIELE 195
Query: 282 DLCFAVL 288
+L F L
Sbjct: 196 ELGFEAL 202
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ H + D A R+ V + I CY +L +H L+ P
Sbjct: 248 REKHLYSIYCKMNLKEQRFHSIMDIYAFRITVKE---------IDTCYRVLGQMHSLYKP 298
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-ETG 535
G DYI PK +GYQSLH+++ GP G +EVQIRT+ M + AE G+AAHW YK T
Sbjct: 299 RPGRIKDYIAIPKANGYQSLHSSLIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKARTQ 358
Query: 536 NKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
N L + + + +S +E S + + +DLF
Sbjct: 359 NGLGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLF 398
>gi|326780479|ref|ZP_08239744.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces griseus XylebKG-1]
gi|326660812|gb|EGE45658.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces griseus XylebKG-1]
Length = 874
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 155 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 209
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L +++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 210 DTEYGLDTLKRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 255
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 256 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 315
Query: 283 LCFAVL 288
L FA+L
Sbjct: 316 LAFAIL 321
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 360 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 410
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 411 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 470
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 471 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 497
>gi|383821694|ref|ZP_09976930.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium phlei RIVM601174]
gi|383332543|gb|EID11019.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium phlei RIVM601174]
Length = 782
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP N + +Q+A A+ H Q RK+GDPY+TH + ILA L + T++A
Sbjct: 66 YPKANLQLLQRAYEVAEERHANQLRKSGDPYITHPLAVAHILAELGMDT-----TTLIAA 120
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L + EFG EVA LV GV++L V GT E
Sbjct: 121 LLHDTVEDTGYTLEELTAEFGSEVAHLVDGVTKLD------------KVALGTAA--EGE 166
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M D RV++IK+ADRLHNMRT+ LPP K + A+ETL + LA RLG+
Sbjct: 167 TIRKMIIAMARDARVLVIKVADRLHNMRTMRFLPPEKQQRKARETLEVIAPLAHRLGMAT 226
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 227 VKWELEDLSFAILH 240
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + I+ CY+ L +
Sbjct: 278 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAALGV 328
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH+ AE G+AAHW
Sbjct: 329 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHKTAELGIAAHW 388
Query: 530 LYKETGNK 537
YKE +
Sbjct: 389 RYKENKGR 396
>gi|421155567|ref|ZP_15615043.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
gi|404520448|gb|EKA31121.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKASS 377
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 208
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|313150268|dbj|BAJ39892.1| ppGpp synthetase [Actinoplanes teichomyceticus]
Length = 821
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 109/193 (56%), Gaps = 19/193 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + Q+QKA A R H GQ+RK+GDPY+TH + ILA L T+VA
Sbjct: 109 HPKADVRQLQKAFDVAARWHSGQYRKSGDPYITHPLAVATILANL-----GMDTTTLVAA 163
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D L + +FG EVA LV GV++L R+ + +A
Sbjct: 164 LLHDTIEDTDYGLEQMRNDFGAEVALLVDGVTKLD----------RVKLGDAA----KAE 209
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LP K A+ETL I LA RLG+
Sbjct: 210 TIRKMVVAMAKDPRVLVIKLADRLHNMRTLTFLPRPKQEQKAKETLEILAPLAHRLGMNT 269
Query: 276 LKAELEDLCFAVL 288
+K ELEDL F L
Sbjct: 270 IKWELEDLAFGTL 282
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R K LYSI+ KM + + +YD +R++V ++ CY+ L +
Sbjct: 321 IKAEVTGRPKHLYSIYQKMIVRGRDFNDIYDLVGVRILVD---------TVRDCYAALGV 371
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE G+AAHW
Sbjct: 372 IHANWQPVPGRFKDYIAMPKFNMYQSLHTTVIGPTGKPVEMQIRTFAMHRTAEFGIAAHW 431
Query: 530 LYKE 533
YKE
Sbjct: 432 KYKE 435
>gi|332139563|ref|YP_004425301.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str. 'Deep
ecotype']
gi|410859796|ref|YP_006975030.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii AltDE1]
gi|327549585|gb|AEA96303.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str. 'Deep
ecotype']
gi|410817058|gb|AFV83675.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii AltDE1]
Length = 703
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 18/189 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQ A A+ AH GQ R +GDPY+TH + ILA + +T++A +LHDV++D
Sbjct: 23 VQDAFVLAQEAHDGQMRSSGDPYITHPVAVAGILADMHLDH-----ETIMAALLHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + E FGD VA+LV GVS+L + T +A + R M++
Sbjct: 78 THYSQEDLAEAFGDTVAELVEGVSKLD------------KLAFSTKQEAQAENFRKMMMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MV D RV+LIKLADR HNMRT+ +L P K R +A ETL I+ +A RLG+ +K ELEDL
Sbjct: 126 MVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIALETLEIYAPIAHRLGIHDIKNELEDL 185
Query: 284 CF-AVLQMR 291
F A+ MR
Sbjct: 186 GFQAMYPMR 194
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 15/159 (9%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM+ K++ ++V D A R+VV ++ CY L +H L+ P
Sbjct: 236 REKHLYSIYRKMKNKELMFNEVMDIYAFRIVVS---------SVDNCYRALGAMHGLYKP 286
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I+ F DYI P+ +GYQSLHT++ GP G +E+QIRTQ+M + A+ G+AAHWLYKE G+
Sbjct: 287 IENRFKDYIAIPRTNGYQSLHTSLIGPHGIPVEIQIRTQEMDQMADKGVAAHWLYKEPGD 346
Query: 537 -----KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
+L++ M +S +E S S + + TDLF
Sbjct: 347 NGTTAQLRARKWM-QSLLELQQSASSSFEFIESVKTDLF 384
>gi|399116460|emb|CCG19266.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Taylorella asinigenitalis 14/45]
Length = 754
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 108/184 (58%), Gaps = 17/184 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A +FA AH+GQ R +G+PY+TH + A +I + K D ++A +LHDV++D
Sbjct: 63 VKVAYSFADNAHYGQMRSSGEPYITHPVE-----AAIICADWKLDCDAIMAALLHDVIED 117
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S SI E VA LV G+++L I + ++A R MLL
Sbjct: 118 QQVSKESIATEINPTVADLVDGLTKLERIQF------------ASKAEQQAESFRKMLLA 165
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D RV+LIKLADRLHNMRT+ L P+KAR +A+ETL I+ ++A+RLG L AE EDL
Sbjct: 166 TTKDVRVILIKLADRLHNMRTLSGLEPSKARRIAKETLEIYAAIANRLGFTKLVAEFEDL 225
Query: 284 CFAV 287
F++
Sbjct: 226 AFSI 229
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
S Y + M+ ++ + D + + + V P +Q Y +L +H+++ P+ G
Sbjct: 276 STYKVHEMMKSQNKSFSNLNDTKFIDITV---------PKLQDAYVVLGALHQIYRPVPG 326
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
F+DYI PK +GY++LHT + GP G+ ++V I T+ M Y E+G+ AHWL ++
Sbjct: 327 TFEDYIAIPKVNGYRALHTIMVGPVGTHIDVAIYTESMKAYNEYGIIAHWLNRD 380
>gi|323494591|ref|ZP_08099695.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
brasiliensis LMG 20546]
gi|323311194|gb|EGA64354.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
brasiliensis LMG 20546]
Length = 706
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ AK AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVAKDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEAQFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV D + CY +L
Sbjct: 228 GLNARVFGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVEDAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQS+HT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSIHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G +
Sbjct: 339 WSYKGNGER 347
>gi|149189233|ref|ZP_01867520.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio shilonii
AK1]
gi|148836987|gb|EDL53937.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio shilonii
AK1]
Length = 705
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVARILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +EE+FG VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEELEEQFGTTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKL+DR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLSDRTHNMRTLGALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ V + R K+L+SI++KM+ K+ H + D A RV+V + CY +L
Sbjct: 228 GLNVRVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVIVDTAD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPGRMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK G++ + + + +S +E S + + +DLF
Sbjct: 339 WAYKGNGDRTGTTAQIKAQRWMQSLLELQQSAGNSFEFIENVKSDLF 385
>gi|395648544|ref|ZP_10436394.1| GTP pyrophosphokinase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P I+ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEIRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 7/193 (3%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ--MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 327
RLG+ +K ELEDL F L+ +A++ R R+ R IT ++ + + D
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQIATLLHER-RLDRERFITDVMGQLRAELQATGVD 257
Query: 328 ESFTTFDEHVLSM 340
+ +H+ S+
Sbjct: 258 ADISGRAKHIYSI 270
>gi|348590298|ref|YP_004874760.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
gi|347974202|gb|AEP36737.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
Length = 754
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 108/184 (58%), Gaps = 17/184 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A +FA AH+GQ R +G+PY+TH + A +I + K D ++A +LHDV++D
Sbjct: 63 VKVAYSFADNAHYGQMRSSGEPYITHPVE-----AAIICADWKLDCDAIMAALLHDVIED 117
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S SI E VA LV G+++L I + ++A R MLL
Sbjct: 118 QQVSKESIATEINPTVADLVDGLTKLERIQF------------ASKAEQQAESFRKMLLA 165
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
D RV+LIKLADRLHNMRT+ L P+KAR +A+ETL I+ ++A+RLG L AE EDL
Sbjct: 166 TTKDVRVILIKLADRLHNMRTLSGLEPSKARRIAKETLEIYAAIANRLGFTKLVAEFEDL 225
Query: 284 CFAV 287
F++
Sbjct: 226 AFSI 229
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 479
S Y + M+ ++ + D + + + V P +Q Y +L +H+++ P+ G
Sbjct: 276 STYKVHEMMKSQNKSFSNLNDTKFIDITV---------PKLQDAYVVLGALHQIYRPVPG 326
Query: 480 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
F+DYI PK +GY++LHT + GP G+ ++V I T+ M Y E+G+ AHWL ++
Sbjct: 327 TFEDYIAIPKVNGYRALHTIMVGPVGTHIDVAIYTESMKAYNEYGIIAHWLNRD 380
>gi|329121021|ref|ZP_08249652.1| GTP diphosphokinase [Dialister micraerophilus DSM 19965]
gi|327471183|gb|EGF16637.1| GTP diphosphokinase [Dialister micraerophilus DSM 19965]
Length = 783
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A +AH GQ R TG+PY+ H + IL+ L + + +VA +LHDV +D
Sbjct: 82 IKKAFELANKAHSGQKRATGEPYIFHPLSVAYILSEL-----ELDRNAIVAALLHDVAED 136
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L IE +FG E+A LV GV++LS Q +++ ++ + + M L
Sbjct: 137 TDTTLEDIENQFGKEIAFLVDGVTKLS---QFKYKNKE---------DQQLENFQKMFLA 184
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RVV+IKLADRLHNMRT++ K + VA+ET+ I+ LA RLG++ +K ELEDL
Sbjct: 185 MAEDVRVVIIKLADRLHNMRTLWVFRKEKRQRVAKETIEIYAPLAHRLGIYNIKWELEDL 244
Query: 284 CFAVL 288
CF L
Sbjct: 245 CFHYL 249
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R K YSI+ KM+R + + ++YD A+RV+V I CY++L
Sbjct: 287 NIKAVITGRPKHFYSIYKKMKRDNRELSQIYDLYAVRVIVD---------TIPQCYAVLG 337
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW P+ F DYI PKP+ YQSLHT + G G +E+QIRT +MH +E+G+AAH
Sbjct: 338 IVHSLWKPLPKRFKDYIAVPKPNMYQSLHTTIIGTKGQPVEIQIRTWEMHHVSEYGIAAH 397
Query: 529 WLYKE-TGNKLQSISS 543
W YKE N Q S
Sbjct: 398 WRYKEGNSNNSQKFDS 413
>gi|187778360|ref|ZP_02994833.1| hypothetical protein CLOSPO_01952 [Clostridium sporogenes ATCC
15579]
gi|187771985|gb|EDU35787.1| RelA/SpoT family protein [Clostridium sporogenes ATCC 15579]
Length = 723
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA FA AH Q R +G+PY+TH IL + V+T++AG++HDVV
Sbjct: 19 EFIKKAYNFACNAHKEQKRISGEPYITHPEEVAIILFEM-----GMDVNTMIAGLMHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + +EFG+EVA LV GV++L + T ++A+++R ML
Sbjct: 74 EDTQYTYEDVAKEFGNEVADLVNGVTKLG------------KIEYKTKEEQQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + AQETL I+ LA RLG+ +K ELE
Sbjct: 122 LAMTKDIRVILIKLADRLHNMRTLRFMPVEKQKEKAQETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLSF 185
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIESEIDGRPKHFYSIYKKMHNKNKNLDQIFDLTAVRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H ++ PI G F DYI PKP+ YQSLH+ V G G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IAHTVYKPIPGRFKDYIAMPKPNMYQSLHSTVMGVGGRPFEIQIRTYEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|407698370|ref|YP_006823157.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str.
'Black Sea 11']
gi|407247517|gb|AFT76702.1| bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate
3-pyrophosphohydrolase [Alteromonas macleodii str.
'Black Sea 11']
Length = 703
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 18/189 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQ A A+ AH GQ R +GDPY+TH + ILA + +T++A +LHDV++D
Sbjct: 23 VQDAFVLAQEAHDGQMRSSGDPYITHPVAVAGILADMHLDH-----ETIMAALLHDVIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S + E FGD VA+LV GVS+L + T +A + R M++
Sbjct: 78 THYSKEDLAEAFGDTVAELVEGVSKLD------------KLAFSTKQEAQAENFRKMMMA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MV D RV+LIKLADR HNMRT+ +L P K R +A ETL I+ +A RLG+ +K ELEDL
Sbjct: 126 MVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIALETLEIYAPIAHRLGIHDIKNELEDL 185
Query: 284 CF-AVLQMR 291
F A+ MR
Sbjct: 186 GFQAMYPMR 194
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 15/166 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K LYSI+ KM+ K++ ++V D A R+VV ++ CY L
Sbjct: 229 IESNVLGREKHLYSIYRKMKNKELMFNEVMDIYAFRIVV---------ESVDSCYRALGA 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI+ F DYI P+ +GYQSLHT++ GP G +E+QIRTQ+M + A+ G+AAHW
Sbjct: 280 MHGLYKPIENRFKDYIAIPRTNGYQSLHTSLIGPHGIPVEIQIRTQEMDQMADKGVAAHW 339
Query: 530 LYKETGN-----KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
LYKE G+ +L++ M +S +E S S + + TDLF
Sbjct: 340 LYKEPGDNGTTAQLRARKWM-QSLLELQQSASSSFEFIESVKTDLF 384
>gi|383781444|ref|YP_005466011.1| putative ppGpp synthetase [Actinoplanes missouriensis 431]
gi|381374677|dbj|BAL91495.1| putative ppGpp synthetase [Actinoplanes missouriensis 431]
Length = 830
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 109/193 (56%), Gaps = 19/193 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + +QKA A R H GQ+RK+GDPY+TH + ILA L T+VA
Sbjct: 118 HPKADARALQKAFDVAARWHSGQYRKSGDPYITHPLAVATILANL-----GMDTTTLVAA 172
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D L + +FG EVA LV GV++L R+ + +A
Sbjct: 173 LLHDTIEDTDYGLEQMRNDFGAEVALLVDGVTKLD----------RVKLGDAA----KAE 218
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IKLADRLHNMRT+ LP AK A+ETL I LA RLG+
Sbjct: 219 TIRKMVVAMAKDPRVLVIKLADRLHNMRTLTFLPRAKQEQKAKETLEILAPLAHRLGMNT 278
Query: 276 LKAELEDLCFAVL 288
+K ELEDL F L
Sbjct: 279 IKWELEDLAFGTL 291
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 415 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 474
+ R K LYSI+ KM + + +YD +R++V ++ CY+ L ++H W
Sbjct: 335 TGRPKHLYSIYQKMIVRGRDFNDIYDLVGVRILVD---------TVRDCYAALGVIHANW 385
Query: 475 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE G+AAHW YKE
Sbjct: 386 QPVPGRFKDYIAMPKFNMYQSLHTTVIGPTGKPVEMQIRTFAMHRTAEFGIAAHWKYKE 444
>gi|114045839|ref|YP_736389.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Shewanella sp.
MR-7]
gi|113887281|gb|ABI41332.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-7]
Length = 700
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 20/203 (9%)
Query: 86 FIVDGVDVTGYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
++ +G+ + EQV+ +A A+ AH GQ R +G+PY+TH + RILA +
Sbjct: 2 YLFEGLKESASGYLEPEQVELLKQAYQVARDAHEGQMRTSGEPYITHPVAVARILAEM-- 59
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+ +T++A +LHD ++D + + E+FG+ VA+LV GVS+L ++L R ++
Sbjct: 60 ---RLDHETLMAALLHDTIEDTYVTKEDLAEQFGEAVAELVEGVSKL---DKLKFRDKK- 112
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+A + R M++ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL
Sbjct: 113 --------EAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLE 164
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
I+ +A+RLG+ +K ELEDL F
Sbjct: 165 IYAPIANRLGIHNIKTELEDLGF 187
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+LYSI++KM+ K++ +V D A RV+V +I CY +L
Sbjct: 228 GIKGKVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIVD---------SIDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +E+QIRT+ M + A+ G+AAH
Sbjct: 279 AMHGLYKPRPGRFKDYIAIPKANGYQSLHTSLFGPHGVPVEIQIRTEDMDQMADKGVAAH 338
Query: 529 WLYK 532
W YK
Sbjct: 339 WAYK 342
>gi|422322063|ref|ZP_16403106.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
[Achromobacter xylosoxidans C54]
gi|317402993|gb|EFV83531.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
[Achromobacter xylosoxidans C54]
Length = 764
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K + + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDANALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K+L+ I+ KM + V D RV+V + CY L
Sbjct: 280 GIEAEVTGREKTLFGIYRKMVDQKKSFSDVLDIYGFRVIVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|312795968|ref|YP_004028890.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Burkholderia rhizoxinica HKI
454]
gi|312167743|emb|CBW74746.1| GTP pyrophosphokinase (EC 2.7.6.5) /
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
(EC 3.1.7.2) [Burkholderia rhizoxinica HKI 454]
Length = 741
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ +S R K +YSI+ KMR K + ++ D RA RV+V P ++ CY++L I
Sbjct: 238 IDAEVSGRPKHIYSIWRKMRGKKLEFSELNDVRAFRVIV---------PDVKDCYTVLGI 288
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH +AE+G+AAHW
Sbjct: 289 VHNIWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHRFAEYGIAAHW 348
Query: 530 LYKETGNK 537
YKE G +
Sbjct: 349 RYKEAGTR 356
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML---IPSSGKRAVDTVVAGILHDVVDD 163
A+AF + G +G+ + H T +I+ L PSS VA L V+
Sbjct: 19 ALAFVREHASGVRLGSGEMLVEHAQGTAQIVNTLNVDPPSS--------VAAALFPVIPY 70
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG--TLGHEEAN--DLRV 219
E + E FG++V +LV V +L + + + + ++G H A LR
Sbjct: 71 LSEPERLLGERFGEDVLQLVTDVRKLLRLGVIGIQATTPDSDKGRDAQAHRRAQVEALRK 130
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYA---LPPAKARAVAQETLLIWCSLASRLGLWAL 276
ML+ D RVVLI+LA RL +R A PPA+ + +ETL I+ LA+RLG+W L
Sbjct: 131 MLMAFAQDIRVVLIRLASRLQTLRFYAAHKLAPPAE---LPRETLEIYAPLANRLGIWQL 187
Query: 277 KAELEDLCF 285
K ELEDL F
Sbjct: 188 KWELEDLAF 196
>gi|226185535|dbj|BAH33639.1| GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate)
3-pyrophosphohydrolase [Rhodococcus erythropolis PR4]
Length = 809
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A+ H Q RK+GDPY+TH + ILA L T+VA
Sbjct: 98 YPKADLALLQRAYDVAEDRHSSQRRKSGDPYITHPLAVASILAEL-----GMDTTTLVAA 152
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + ++FGDEVA LV GV++L V GT E
Sbjct: 153 LLHDTVEDTGYSLEELTKDFGDEVAHLVDGVTKLD------------KVVLGTAA--EGE 198
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 199 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 258
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 259 VKWELEDLSFAILH 272
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +SI+ KM K ++D +R++ + ++ CY+ + +VH L
Sbjct: 314 VEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCEE---------VRDCYAAVGVVHSL 364
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI P+ YQSLHT V GP+G LEVQIRTQ MH AE G+AAHW YKE
Sbjct: 365 WQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTQDMHRTAEFGIAAHWRYKE 424
Query: 534 TGNK 537
T K
Sbjct: 425 TKGK 428
>gi|113971943|ref|YP_735736.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Shewanella sp.
MR-4]
gi|113886627|gb|ABI40679.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-4]
Length = 700
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 20/203 (9%)
Query: 86 FIVDGVDVTGYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
++ +G+ + EQV+ +A A+ AH GQ R +G+PY+TH + RILA +
Sbjct: 2 YLFEGLKESASGYLEPEQVELLKQAYQVARDAHEGQMRTSGEPYITHPVAVARILAEM-- 59
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+ +T++A +LHD ++D + + E+FG+ VA+LV GVS+L ++L R ++
Sbjct: 60 ---RLDHETLMAALLHDTIEDTYVTKEDLAEQFGEAVAELVEGVSKL---DKLKFRDKK- 112
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+A + R M++ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL
Sbjct: 113 --------EAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLE 164
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
I+ +A+RLG+ +K ELEDL F
Sbjct: 165 IYAPIANRLGIHNIKTELEDLGF 187
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+LYSI++KM+ K++ +V D A RV+V +I CY +L
Sbjct: 228 GIKGKVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIVD---------SIDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +E+QIRT+ M + A+ G+AAH
Sbjct: 279 AMHGLYKPRPGRFKDYIAIPKANGYQSLHTSLFGPHGVPVEIQIRTEDMDQMADKGVAAH 338
Query: 529 WLYK 532
W YK
Sbjct: 339 WAYK 342
>gi|258645309|ref|ZP_05732778.1| GTP diphosphokinase [Dialister invisus DSM 15470]
gi|260402658|gb|EEW96205.1| GTP diphosphokinase [Dialister invisus DSM 15470]
Length = 792
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 125/232 (53%), Gaps = 28/232 (12%)
Query: 60 VAIASGAC-LSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQ 118
+ I SG S + + KL E+ T+I + + E ++ A A++AH GQ
Sbjct: 51 IKIESGKKDFSIETSHEYNKLMEKLKTYIHETQSM--------ETIRHAFEIAQKAHEGQ 102
Query: 119 FRKTGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGD 177
R TG+PY+ H + ILA L I + G ++A +LHDVV+D +L I FGD
Sbjct: 103 IRATGEPYIIHPLAVAYILAELEIDAQG------IIAALLHDVVEDTAYTLEDIRRIFGD 156
Query: 178 EVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLAD 237
EVA +V G+++LS H + +Q T + R M L M D RVV+IKLAD
Sbjct: 157 EVAFIVDGITKLSQF------HYKDKEDQQT------ENFRKMFLAMAQDIRVVVIKLAD 204
Query: 238 RLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
RLHNMRT+ K +A+ET+ I+ LA RLG++ +K ELEDLCF L
Sbjct: 205 RLHNMRTLGIFRREKQIRIAKETMEIYAPLAHRLGIYNIKWELEDLCFHYLH 256
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 10/129 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ T++ R K YSI+ KM+R + + ++YD A+RV+V I CY++L
Sbjct: 293 GIKATITGRPKHFYSIYKKMKRDNKDLSQIYDLYAVRVIVN---------TIPQCYAVLG 343
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I H LW P+ F DYI PKP+ YQSLHT V G G +E+QIRT +MH +E+G+AAH
Sbjct: 344 IAHSLWKPLPNRFKDYIAVPKPNMYQSLHTTVIGTKGQPVEIQIRTWEMHHISEYGVAAH 403
Query: 529 WLYKETGNK 537
W YKE GNK
Sbjct: 404 WRYKE-GNK 411
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 730 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 789
+ K+ LR +L W++ S+ L KL V + V V P G+++ L
Sbjct: 417 FDQKISWLRRLLEWQDTSNSKEFLNALKLD----------VFSDEVFVFTPKGDVINLPK 466
Query: 790 GSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 828
GS D A ++ E G + VN ++V +T+LK+GDIV V
Sbjct: 467 GSIPIDFAYRIHTEVGNHCVGAKVNNKIVPLDTKLKNGDIVSV 509
>gi|197303672|ref|ZP_03168709.1| hypothetical protein RUMLAC_02399 [Ruminococcus lactaris ATCC
29176]
gi|197297192|gb|EDY31755.1| RelA/SpoT family protein [Ruminococcus lactaris ATCC 29176]
Length = 774
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA K AH Q RK+G+PY+ H + G ILA L + +T+VAG+LHDVV+D
Sbjct: 60 IEKAYRIGKEAHKDQVRKSGEPYIIHPLWVGIILAEL-----EMDKETIVAGMLHDVVED 114
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L I EFG+EVA LV GV++L QL ++ V +A +LR M L
Sbjct: 115 TEMTLDDITREFGEEVALLVDGVTKLG---QLSYSQDKLEV--------QAENLRKMFLA 163
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ + AK + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 164 MAKDIRVIIIKLADRLHNMRTLEFMTEAKQKEKARETMDIYAPIAQRLGISKIKTELDDL 223
Query: 284 CFAVLQ 289
Q
Sbjct: 224 SLKYYQ 229
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 267 IKAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 317
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 318 IHEMYTPIPGRFKDYIAMPKANMYQSLHTTLMGPAGQPFEIQIRTEEMHKTAEYGIAAHW 377
Query: 530 LYKETG 535
YKETG
Sbjct: 378 KYKETG 383
>gi|418021802|ref|ZP_12660811.1| (p)ppGpp synthetase, partial [Candidatus Regiella insecticola
R5.15]
gi|347602844|gb|EGY27799.1| (p)ppGpp synthetase [Candidatus Regiella insecticola R5.15]
Length = 526
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 115/185 (62%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A A+ AH GQ R +G+PY+TH + ILA + + +T++A +LHDV++D
Sbjct: 1 LEQAYCVARDAHQGQTRSSGEPYITHPVAVACILAEM-----RLDYETLMAALLHDVIED 55
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E+ FG VA+LV GVS+L ++L R RR +A + R M++
Sbjct: 56 TSVTYHDMEQLFGKSVAELVEGVSKL---DKLTFRDRR---------EAQAENFRKMIMA 103
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
MV D RV+LIKLADR HNMRT+++L P K R +A+ETL I+ LA RLG+ LK ELE+L
Sbjct: 104 MVQDIRVILIKLADRTHNMRTLHSLRPDKRRRIARETLEIYSPLAHRLGIHHLKIELEEL 163
Query: 284 CFAVL 288
F L
Sbjct: 164 GFEAL 168
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ H + D A R+ V + I CY +L +H L+ P
Sbjct: 214 REKHLYSIYCKMNLKEQRFHSIMDIYAFRITVKE---------IDTCYRVLGQMHSLYKP 264
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-ETG 535
G DYI PK +GY+SLH+++ GP G +EVQIRT+ M + AE G+AAHW YK T
Sbjct: 265 RPGRIKDYIAIPKANGYESLHSSLIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKARTQ 324
Query: 536 NKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
N L + + + +S +E S + + +DLF
Sbjct: 325 NGLGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLF 364
>gi|205374215|ref|ZP_03227014.1| GTP diphosphokinase [Bacillus coahuilensis m4-4]
Length = 708
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA +A +AH QFRK+G+PY+ H I ILA L + TV AG LHDVV+D
Sbjct: 4 VQKAYEYADKAHKEQFRKSGEPYIIHPIQVAGILADLEMDAA-----TVAAGFLHDVVED 58
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
S I E F +EVA LV GV++L + + ++A + R M +
Sbjct: 59 TPISKQDIAETFNEEVAMLVDGVTKLG------------KIKFKSQEEQQAENHRKMFVA 106
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ET+ I+ LA RLG+ +K ELED
Sbjct: 107 MAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETIEIFAPLAHRLGISKIKWELEDT 166
Query: 284 CFAVL 288
L
Sbjct: 167 ALRYL 171
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 214 LSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 264
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT+ MH AE+G+AAHW YKE
Sbjct: 265 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTRDMHRIAEYGVAAHWAYKE 324
Query: 534 TGNKLQSISSMDE 546
+ S ++ D+
Sbjct: 325 EKEHVASRNTFDK 337
>gi|26988388|ref|NP_743813.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida KT2440]
gi|24983142|gb|AAN67277.1|AE016354_4 GTP pyrophosphokinase [Pseudomonas putida KT2440]
Length = 746
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|381158677|ref|ZP_09867910.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
gi|380880035|gb|EIC22126.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
Length = 750
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 86/127 (67%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK V I +++D RALRV+V D I CY+ L
Sbjct: 249 GIEAQISGRPKHIYSIWRKMQRKRVDIEQIFDLRALRVIVAD---------IPACYAALG 299
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRTQ+MHE+AE G+AAH
Sbjct: 300 VVHGLWKHIPREFDDYIATPKGNLYRSLHTAVIGPEDKPLEVQIRTQEMHEHAELGVAAH 359
Query: 529 WLYKETG 535
W YKE
Sbjct: 360 WAYKEAA 366
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAK 181
TG+ H + T IL L + DT+ A +L+ + + + E FG +A+
Sbjct: 56 TGESEARHRLATADILFNL-----RMDADTLCAALLNGCLGREQVTEDRLAERFGPGIAR 110
Query: 182 LVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHN 241
+VA + R+ + + R I + HEE +LR +LLG+ +D RVVL+ LA+RL
Sbjct: 111 MVADLGRIGALTNVAR----IIAEKDQHEHEE--NLRRLLLGIAEDVRVVLVVLAERLQL 164
Query: 242 MRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
MR L PA+ A+A++T ++ LA+RLG+W +K ELEDL
Sbjct: 165 MRAAKLLEPARQTALAEDTERVYAPLANRLGVWQIKWELEDLAL 208
>gi|313891996|ref|ZP_07825597.1| GTP diphosphokinase [Dialister microaerophilus UPII 345-E]
gi|313119639|gb|EFR42830.1| GTP diphosphokinase [Dialister microaerophilus UPII 345-E]
Length = 783
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A +AH GQ R TG+PY+ H + IL+ L + + +VA +LHDV +D
Sbjct: 82 IKKAFELANKAHSGQKRATGEPYIFHPLSVAYILSEL-----ELDRNAIVAALLHDVAED 136
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L IE +FG E+A LV GV++LS Q +++ ++ + + M L
Sbjct: 137 TDTTLEDIENQFGKEIAFLVDGVTKLS---QFKYKNKE---------DQQLENFQKMFLA 184
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RVV+IKLADRLHNMRT++ K + VA+ET+ I+ LA RLG++ +K ELEDL
Sbjct: 185 MAEDVRVVIIKLADRLHNMRTLWVFRKEKRQRVAKETIEIYAPLAHRLGIYNIKWELEDL 244
Query: 284 CFAVL 288
CF L
Sbjct: 245 CFHYL 249
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R K YSI+ KM+R + + ++YD A+RV+V I CY++L
Sbjct: 287 NIKAVITGRPKHFYSIYKKMKRDNRELSQIYDLYAVRVIVD---------TIPQCYAVLG 337
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW P+ F DYI PKP+ YQSLHT + G G +E+QIRT +MH +E+G+AAH
Sbjct: 338 IVHSLWKPLPKRFKDYIAVPKPNMYQSLHTTIIGTKGQPVEIQIRTWEMHHVSEYGIAAH 397
Query: 529 WLYKE-TGNKLQSISS 543
W YKE N Q S
Sbjct: 398 WRYKEGNSNNSQKFDS 413
>gi|262283461|ref|ZP_06061227.1| GTP diphosphokinase [Streptococcus sp. 2_1_36FAA]
gi|262260952|gb|EEY79652.1| GTP diphosphokinase [Streptococcus sp. 2_1_36FAA]
Length = 738
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 108/188 (57%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A H GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VQKALVYAVDCHSGQFRKSGEPYIVHPIQVAGILAKL-----KLDAVTVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
SL +E EFG +V +V GV++L + HEE A + R ML
Sbjct: 83 TDASLDDLEREFGPDVRTIVDGVTKLGKVKYK--------------SHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M +D RV+L+KLADRLHNMRT+ L K +++ET+ I+ LA RLG+ ++K ELE
Sbjct: 129 MAMSEDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISSVKWELE 188
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 189 DLSFRYLN 196
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R + L P+ Y++L +H L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFDEIYDLIAIRCI-------LETPS--DVYAMLGYIHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WKPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|300781066|ref|ZP_07090920.1| GTP diphosphokinase [Corynebacterium genitalium ATCC 33030]
gi|300532773|gb|EFK53834.1| GTP diphosphokinase [Corynebacterium genitalium ATCC 33030]
Length = 759
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 19/193 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A+R H G RK+GDPY+TH + I A + + TVVA
Sbjct: 48 HPKADAEVLTRAYDTAERLHEGVSRKSGDPYITHPLAVATICAEIGMDT-----TTVVAA 102
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D SL + E+FG EVA+LV GV++L V G+ EA
Sbjct: 103 LLHDTVEDTDYSLADLTEDFGPEVARLVDGVTKLD------------KVAFGSAA--EAE 148
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K + A+ETL + LA RLG+
Sbjct: 149 TVRKMVVAMAQDPRVLVIKVADRLHNMRTMRFLPPEKQQKKARETLEVIAPLAHRLGMAT 208
Query: 276 LKAELEDLCFAVL 288
+K ELEDL FA+L
Sbjct: 209 VKWELEDLAFAIL 221
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +SI+ KM + ++++D +R++V + + CY+ +
Sbjct: 259 GVKADVMGRPKHYWSIYQKMVVRGRDFNEIFDLVGIRILVDN---------VSDCYAAIG 309
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH ++ + G F DYI NP+ YQSLHT V G LE+Q+RT +MH AE G+AAH
Sbjct: 310 VVHSMYSAMPGRFKDYISNPRFGVYQSLHTTVMNDSGRPLEIQVRTHEMHYNAEFGVAAH 369
Query: 529 WLYKET 534
W YKET
Sbjct: 370 WRYKET 375
>gi|116872952|ref|YP_849733.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741830|emb|CAK20954.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 738
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ +H QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSHKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE F EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEAFDSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|270160131|ref|ZP_06188787.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|289165092|ref|YP_003455230.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
gi|269988470|gb|EEZ94725.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|288858265|emb|CBJ12133.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
Length = 734
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 9/121 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K ++SI+ KM RK+V + ++YDA A+RV+V K P CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVSLDEIYDATAVRVLVDTK------PQ---CYEVLGMVHTLWKQ 307
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 ISAEFDDYIINPKANGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGG 367
Query: 537 K 537
K
Sbjct: 368 K 368
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 12/195 (6%)
Query: 95 GYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVA 154
GY + N E ++ A ++ A +TG L + +LA L +T+ A
Sbjct: 29 GY-LDNLELIRAACTLSQLAGQEHATETGQSCLQQGLSMADLLADLEVDQ-----ETLAA 82
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
I+ + V A S+ + E+ G +AKLV G+ R+S + H +N+ ++
Sbjct: 83 AIIFENVHYADLSVDDVAEQLGPNIAKLVKGIERMSAM------HSFQALNKYPQNKQQI 136
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+++R MLL MVDD R VLIKLA+RL +RT L + +A E + I+ LA+RLG+
Sbjct: 137 DNIRKMLLAMVDDVRAVLIKLAERLCVLRTASHLSEELRKQLATEAMEIYAPLANRLGIG 196
Query: 275 ALKAELEDLCFAVLQ 289
A+K E+EDL F L
Sbjct: 197 AIKWEMEDLAFRYLH 211
>gi|433444159|ref|ZP_20409169.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
gi|432001807|gb|ELK22676.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
Length = 732
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 103/187 (55%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FAK AH Q+RK+G+PY+ H I IL L T+ AG LHDVV+D
Sbjct: 28 IERAYEFAKEAHREQYRKSGEPYIIHPIQVAGILVDLEMDPA-----TIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+ +E EFG EVA LV GV++L I HEE A + R M
Sbjct: 83 THVTKEDLEREFGKEVAMLVDGVTKLGKIK--------------YKSHEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|411001452|ref|ZP_11377781.1| ppGpp synthetase [Streptomyces globisporus C-1027]
Length = 873
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 154 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 208
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L +++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 209 DTEYGLDTLKRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 254
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 255 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 314
Query: 283 LCFAVL 288
L FA+L
Sbjct: 315 LAFAIL 320
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 359 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 409
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 410 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 469
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 470 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 496
>gi|15643492|ref|NP_228538.1| (p)ppGpp synthetase [Thermotoga maritima MSB8]
gi|4981255|gb|AAD35811.1|AE001744_1 (p)ppGpp synthetase [Thermotoga maritima MSB8]
Length = 751
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 15/185 (8%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
KA FA+ H GQ R +G+P++TH + +ILA L V T+VA +LHDVV+D
Sbjct: 73 KAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVD-----VTTLVAALLHDVVEDGE 127
Query: 166 E-SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM 224
SL I++EFG EVA++V GV+++S IN + R + ++ ++ M M
Sbjct: 128 NVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQD--------SRKKIETIQKMFFAM 179
Query: 225 VDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
+D RV+ +KLADRLHNMRTI Y P K R A ETL I+ LA +LG++++K+ELEDL
Sbjct: 180 AEDMRVIFVKLADRLHNMRTIHYVQDPEKKRYKAYETLEIYAPLAHKLGIYSIKSELEDL 239
Query: 284 CFAVL 288
F VL
Sbjct: 240 AFKVL 244
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K YSI+ KM+ K ++YD ALRV+V D + CY++L I
Sbjct: 283 IKAIVEGRYKHYYSIWRKMKEKGKKFEEIYDLIALRVIVKD---------VTTCYTVLGI 333
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH +W P+ G F DYI PK +GY+SLHT V G LE+QIR ++MH AE+GL AHW
Sbjct: 334 VHNIWKPLPGRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHW 393
Query: 530 LYKE 533
+YKE
Sbjct: 394 IYKE 397
>gi|374261430|ref|ZP_09620014.1| hypothetical protein LDG_6401 [Legionella drancourtii LLAP12]
gi|363538325|gb|EHL31735.1| hypothetical protein LDG_6401 [Legionella drancourtii LLAP12]
Length = 708
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+ +A A++AH+GQ R++G+PY+TH + ILA + + T++A +LHDVV
Sbjct: 21 EKCYQAYLVAEKAHYGQMRRSGEPYITHPVAAALILARM-----RLDYQTIMATLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S + +FG+++ LV GV++L+ + + +A + R M+
Sbjct: 76 EDTSVSKEDLTRQFGEDITALVDGVTKLT------------KIKFESKAEAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+++KLADRLHNMRT+ A+PPAK R +A ETL I+ +A+RLG+ ++ LE
Sbjct: 124 LAMVKDIRVIIVKLADRLHNMRTLGAMPPAKRRRIAIETLEIYAPIANRLGMHSIYVGLE 183
Query: 282 DLCFAVL 288
DL F L
Sbjct: 184 DLGFQAL 190
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KMR K ++ D A RV+ D I CY +L +H + P
Sbjct: 237 RQKHLYSIYRKMRLKKASFTEITDVFAFRVITED---------IDSCYRILGALHCTYKP 287
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 535
+ F DYI PK +GYQSLHT + GP G LEVQIRT+ M + A++G+AAHW+YK +G
Sbjct: 288 VPQRFKDYIGIPKANGYQSLHTTLFGPFGVPLEVQIRTRDMDKVADNGVAAHWIYKSSG 346
>gi|422005240|ref|ZP_16352435.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|417256095|gb|EKT85535.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
Length = 674
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|182439815|ref|YP_001827534.1| ppGpp synthetase [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178468331|dbj|BAG22851.1| putative ppGpp synthetase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 858
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 139 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 193
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L +++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 194 DTEYGLDTLKRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 239
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 240 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 299
Query: 283 LCFAVL 288
L FA+L
Sbjct: 300 LAFAIL 305
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 344 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 394
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 395 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 454
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 455 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 481
>gi|270307456|ref|YP_003329514.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
gi|270153348|gb|ACZ61186.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
Length = 728
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 111/179 (62%), Gaps = 10/179 (5%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ RK+G+P++ H ++ LA L + V T+ A +LHDV +DA SL I+++
Sbjct: 33 HTGQMRKSGEPFIEHPLNVALTLADL-----QLDVSTLSAALLHDVPEDANISLEQIDKK 87
Query: 175 FGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVL 232
FG +VAKLV GV++LS + + RR G +A +LR ML+ M +D RVV
Sbjct: 88 FGPDVAKLVDGVTKLSKLALGPAIEDARRPG---GNASLRQAENLRKMLVAMSEDLRVVF 144
Query: 233 IKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMR 291
IKLADR HNMRT+ AL K R++A+ET+ I+ LA RLG+W LK +LEDL F L R
Sbjct: 145 IKLADRFHNMRTLQALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPR 203
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 526 AAHWLYKETGNK 537
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
>gi|359727202|ref|ZP_09265898.1| GTP pyrophosphokinase [Leptospira weilii str. 2006001855]
gi|417779516|ref|ZP_12427301.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
gi|410780345|gb|EKR64939.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
Length = 674
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|423017529|ref|ZP_17008250.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter xylosoxidans AXX-A]
gi|338779428|gb|EGP43870.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Achromobacter xylosoxidans AXX-A]
Length = 764
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A FA +AH GQFR +G PY++H I I A K + + A +LHDV+
Sbjct: 73 ERVREAYRFADQAHLGQFRASGSPYISHPIAVTEICA-----GWKLDANALSAALLHDVM 127
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG EVA+LV G+S+L ++ T ++A R ML
Sbjct: 128 EDQGIAKHELAEKFGPEVAELVDGLSKLD------------RLDFATKAEQQAESFRKML 175
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R +A+ETL I+ +A RLGL L EL+
Sbjct: 176 LAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLDIYAPIAHRLGLNLLFRELQ 235
Query: 282 DLCFAVL 288
DLCFA +
Sbjct: 236 DLCFAAM 242
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E ++ R K+L+ I+ KM + V D RV+V + CY L
Sbjct: 280 GIEAEVTGREKTLFGIYRKMVDQKKSFSDVLDIYGFRVIVH---------TLPECYLALG 330
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT+ MH AE G+A+H
Sbjct: 331 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHVAEEGVASH 390
Query: 529 WLYKETGNKLQSISSMDES------DIEASSSLSKDTDDHNPLDTDLF 570
WLYK L + DI++ + S + +H + DLF
Sbjct: 391 WLYKGADLTLNDLQKRTHQWLQSLLDIQSQTGDSGEFLEH--VKVDLF 436
>gi|291443389|ref|ZP_06582779.1| ppGpp synthetase [Streptomyces roseosporus NRRL 15998]
gi|291346336|gb|EFE73240.1| ppGpp synthetase [Streptomyces roseosporus NRRL 15998]
Length = 818
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 99 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 153
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L +++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 154 DTEYGLDTLKRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 199
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 200 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 259
Query: 283 LCFAVL 288
L FA+L
Sbjct: 260 LAFAIL 265
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 304 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 354
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 355 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 414
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 415 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 441
>gi|456865837|gb|EMF84149.1| putative GTP diphosphokinase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 674
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TE++ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTEIRSGDQIEI 450
>gi|341602506|emb|CCC65182.1| probable GTP pyrophosphokinase relA [Mycobacterium bovis BCG str.
Moreau RDJ]
Length = 790
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L T+VA
Sbjct: 75 YPKADPSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAEL-----GMDTTTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 130 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 235 SVKWELEDLSFAILH 249
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
>gi|422021488|ref|ZP_16368000.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Providencia
sneebia DSM 19967]
gi|414099346|gb|EKT60989.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Providencia
sneebia DSM 19967]
Length = 705
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA A+ AH GQ R +G+PY+TH + ILA + + +T++A +LHDV+
Sbjct: 21 ELLKKAYIVARDAHEGQTRSSGEPYITHPVAVACILAQM-----RLDHETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + IEE FG VA LV GVS+L +N ++ +A + R M+
Sbjct: 76 EDTPATFQDIEELFGSTVAGLVEGVSKLDKLNFRDKKE------------AQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVKDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCKVSGREKHLYSIYRKMHLKEQRFHSIMDIYAFRVIVKD---------VDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHNLYKPRPGRIKDYIAIPKANGYQSLHTSLIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 529 WLYKETG 535
W YKE G
Sbjct: 339 WAYKEQG 345
>gi|407003296|gb|EKE19893.1| hypothetical protein ACD_8C00092G0015 [uncultured bacterium]
Length = 496
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 115/187 (61%), Gaps = 20/187 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ +A FA +AH GQ R++G+ Y+ H I +ILA + GK T+ AG+LHDV +D
Sbjct: 25 ITEAYNFAMKAHTGQLRRSGEDYIQHPIAVAKILAE-VGMGGK----TIAAGLLHDVPED 79
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA--NDLRVML 221
+L +E+EFG E+A+LV GV++L I LR HEE +LR ML
Sbjct: 80 TQMTLEDVEKEFGKEIAQLVNGVTKLGKIK--LRG-----------SHEEYFLENLRKML 126
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV++IKLADRLHNM+T+ PP K +A+ET+ ++ +A+RLG+ +K++L+
Sbjct: 127 LAMASDIRVIIIKLADRLHNMQTLQHNPPEKQVRIARETMEVFAPIANRLGMGEMKSQLQ 186
Query: 282 DLCFAVL 288
DL F L
Sbjct: 187 DLSFKYL 193
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R KS+YS+F K+++ D+ I ++YD A+RV V + + CY L IVH+
Sbjct: 237 ISGRAKSVYSLFLKLQKHDMDISRIYDLAAVRVTVQE---------VADCYETLGIVHKK 287
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y E
Sbjct: 288 YRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIYAE 347
>gi|212638570|ref|YP_002315090.1| GTP pyrophosphokinase [Anoxybacillus flavithermus WK1]
gi|212560050|gb|ACJ33105.1| GTP pyrophosphokinase (ppGpp synthetase) [Anoxybacillus
flavithermus WK1]
Length = 732
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 103/187 (55%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+++A FAK AH Q+RK+G+PY+ H I IL L T+ AG LHDVV+D
Sbjct: 28 IERAYEFAKEAHREQYRKSGEPYIIHPIQVAGILVDLEMDPA-----TIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+ +E EFG EVA LV GV++L I HEE A + R M
Sbjct: 83 THVTKEDLEREFGKEVAMLVDGVTKLGKIK--------------YKSHEEQQAENHRKMF 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELE
Sbjct: 129 LAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DTALRYL 195
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|451812326|ref|YP_007448780.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778228|gb|AGF49176.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 330
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 390 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 449
+ E L K I Y G++ +S RLK +YSI++KM K++ ++YD ALRVVV
Sbjct: 187 IFIESTLSKIKSILNRY--GIKAEISGRLKHIYSIWNKMCFKNIDFSRLYDLSALRVVVD 244
Query: 450 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 509
D ++ CY +LDIVH+LW I EFDDYI PKP+GYQSLHT V D +E
Sbjct: 245 D---------VKTCYMVLDIVHKLWDHIPEEFDDYISRPKPNGYQSLHTVVIDKDNYLIE 295
Query: 510 VQIRTQKMHEYAEHGLAAHWLYKETGN 536
+QIRT MH +AE+GLA+HW YK+ N
Sbjct: 296 IQIRTCDMHNFAEYGLASHWFYKKFRN 322
>gi|441415032|dbj|BAM74498.1| ppGpp synthetase [Streptomyces natalensis ATCC 27448]
Length = 861
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 112/188 (59%), Gaps = 23/188 (12%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDV 160
QV++A A+R H GQ RK+GDPY+TH + ILA L +D T++AG+LHD
Sbjct: 144 QVERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAEL-------GMDPATLMAGLLHDT 196
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
V+D L + +FGD+VA LV GV++L R+ + +A +R M
Sbjct: 197 VEDTEYGLEQLRRDFGDQVALLVDGVTKLD----------RVKFGEAA----QAETVRKM 242
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
++ M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K EL
Sbjct: 243 VVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWEL 302
Query: 281 EDLCFAVL 288
EDL FA+L
Sbjct: 303 EDLAFAIL 310
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 349 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 399
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 400 IHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 459
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 460 KYKQ---EAVAGASKIRTDVPKNAGKGQDT 486
>gi|354808370|ref|ZP_09041791.1| (p)ppGpp synthase/hydrolase RelA [Lactobacillus curvatus CRL 705]
gi|354513152|gb|EHE85178.1| (p)ppGpp synthase/hydrolase RelA [Lactobacillus curvatus CRL 705]
Length = 743
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 107/186 (57%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FA H Q R++G+PY+ H I ILA L K TV +G LHDVV+D
Sbjct: 28 VQKAYDFAAYVHKEQVRQSGEPYIIHPIQVAGILAEL-----KMDPATVASGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+LG +EE FG +VA +V GV++L I + +Q L A + R MLL
Sbjct: 83 TNITLGDVEEMFGKDVAVIVDGVTKLGKI--------KYKSHQEQL----AENHRKMLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ L P K R +A ETL I+ LA RLG+ +K ELED+
Sbjct: 131 MAKDLRVIMVKLADRLHNMRTLKHLKPEKQRRIANETLEIYAPLADRLGISKIKWELEDI 190
Query: 284 CFAVLQ 289
L
Sbjct: 191 SLRYLN 196
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
M + R K LYSI+ KMR + ++YD A+RVVV +I+ CY++L
Sbjct: 234 MNYDIYGRPKHLYSIYRKMRDQHKQFEELYDLLAIRVVVD---------SIKDCYAVLGA 284
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRTQ+MH+ AE+G+AAHW
Sbjct: 285 IHTKWKPMPGRFKDYIAMPKANMYQSIHTTVIGPKGKPLEVQIRTQEMHDVAEYGVAAHW 344
Query: 530 LYKE 533
YKE
Sbjct: 345 AYKE 348
>gi|430761273|ref|YP_007217130.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010897|gb|AGA33649.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 724
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GIQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 566
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 229
+ ++FG+ VA+L VS L RR G E+A LR MLL MVDD R
Sbjct: 88 QMSQQFGEVVARLAENVSELV--------RRRFEAPTGR--PEQAERLRRMLLAMVDDVR 137
Query: 230 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
VLIK A RL N+R + +AQETL + LA+RLG+ +LK E+EDL +L+
Sbjct: 138 AVLIKFAFRLQNLRLAVKQMEPGTKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILE 197
Query: 290 MRA 292
A
Sbjct: 198 PEA 200
>gi|315640053|ref|ZP_07895178.1| GTP diphosphokinase [Enterococcus italicus DSM 15952]
gi|315484181|gb|EFU74652.1| GTP diphosphokinase [Enterococcus italicus DSM 15952]
Length = 745
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 106/181 (58%), Gaps = 21/181 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH GQFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 36 VQKALDYATSAHEGQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 90
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L + EEFG +VA LV GV++L I HEE A + R ML
Sbjct: 91 TDVTLQDLTEEFGPDVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 136
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+++KLADRLHNMRT+ L K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 137 IAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIARETLDIYAPLAHRLGISRIKWELE 196
Query: 282 D 282
D
Sbjct: 197 D 197
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 10/136 (7%)
Query: 398 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
+EL I+T + + + R K +YSI+ KM K ++YD A+RV+V
Sbjct: 231 EELRIATEEL-DIYAEIYGRPKHIYSIYRKMVDKKKQFDEIYDLLAIRVIVD-------- 281
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
+I+ CY++L +H W P+ G F DYI PK + YQSLHT V GP+G+ +E+QIRT +M
Sbjct: 282 -SIKDCYAVLGTIHTKWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGNPVEIQIRTHEM 340
Query: 518 HEYAEHGLAAHWLYKE 533
HE AE G+AAHW YKE
Sbjct: 341 HEIAEFGVAAHWAYKE 356
>gi|300361857|ref|ZP_07058034.1| GTP diphosphokinase [Lactobacillus gasseri JV-V03]
gi|300354476|gb|EFJ70347.1| GTP diphosphokinase [Lactobacillus gasseri JV-V03]
Length = 750
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 109/196 (55%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYKFAKNAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIEYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVRDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|398333292|ref|ZP_10517997.1| GTP pyrophosphokinase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 674
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|322386285|ref|ZP_08059916.1| GTP diphosphokinase [Streptococcus cristatus ATCC 51100]
gi|321269652|gb|EFX52581.1| GTP diphosphokinase [Streptococcus cristatus ATCC 51100]
Length = 739
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 107/188 (56%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A H GQ RK+G+PY+ H I ILA L K +V G LHDVV+D
Sbjct: 28 VQKALIYAMECHSGQTRKSGEPYIVHPIQVAGILAKL-----KLDAVSVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L +E EFG +V +V GV++L + HEE A + R ML
Sbjct: 83 TAATLDDLEREFGHDVRVIVDGVTKLGKVK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M +D RV+L+KLADRLHNMRT+ L P K + QET+ I+ LA RLG+ ++K ELE
Sbjct: 129 MAMSEDLRVILVKLADRLHNMRTLNHLRPDKQERILQETMEIYAPLAHRLGISSVKWELE 188
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 189 DLSFRYLN 196
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R ++ + Y++L +H L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFDEIYDLIAIRCILSTHSD---------VYAMLGYIHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WKPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|225021310|ref|ZP_03710502.1| hypothetical protein CORMATOL_01329 [Corynebacterium matruchotii
ATCC 33806]
gi|224946043|gb|EEG27252.1| hypothetical protein CORMATOL_01329 [Corynebacterium matruchotii
ATCC 33806]
Length = 744
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A+R H G FRK+GDPY+TH + I A + + T++A
Sbjct: 31 HPKADVELLSRAYDTAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTIIAS 85
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG+EVA+LV GV++L + LG EA
Sbjct: 86 LLHDTVEDTEYSLDDLTNDFGEEVARLVDGVTKLDKV---------------ALGAAAEA 130
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 131 ETIRKMVMAMAQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLDVIAPLAHRLGMS 190
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 191 SVKWELEDLSFAIL 204
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R K +SI+ KM + +++D +R++V + N CY+ + +
Sbjct: 243 IDAEVKGRPKHYWSIYQKMVMRGKDFDEIFDLVGIRILVDNLNN---------CYAAIGV 293
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH AE+G+AAHW
Sbjct: 294 VHSLFAAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHVNAEYGIAAHW 353
Query: 530 LYKET 534
YKET
Sbjct: 354 RYKET 358
>gi|323702158|ref|ZP_08113825.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum nigrificans DSM
574]
gi|333924436|ref|YP_004498016.1| (p)ppGpp synthetase I SpoT/RelA [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532845|gb|EGB22717.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum nigrificans DSM
574]
gi|333749997|gb|AEF95104.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 723
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 108/182 (59%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA FA+ AH GQ R +G+ Y+ H + ILA L + + TV AG+LHDVV+D
Sbjct: 23 LRKAYNFAENAHRGQKRISGEDYIVHPLAIAIILAEL-----QLDIKTVAAGLLHDVVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L IE FG EVA++V GV++L + R R +A +LR M L
Sbjct: 78 TGVTLADIENNFGSEVARMVDGVTKLGKLQFQSREER------------QAENLRKMFLA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHN+RT+ K + VA+ETL+ + LA RLG++ +K ELEDL
Sbjct: 126 MAKDIRVILIKLADRLHNLRTLQFQSERKQKEVAEETLVFFAPLAHRLGIYKIKWELEDL 185
Query: 284 CF 285
F
Sbjct: 186 SF 187
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K+LYSI+ KM + + ++D +A+RV+V ++ CY L I H L
Sbjct: 233 IQGRPKNLYSIYQKMVEQQKELKDIFDVQAVRVLVD---------TVKDCYGALGIAHTL 283
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW YKE
Sbjct: 284 WKPIPGRFKDYIAMPKSNMYQSLHTTVIGPNGEPVEIQIRTWDMHRVAEYGIAAHWKYKE 343
>gi|322420743|ref|YP_004199966.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter sp. M18]
gi|320127130|gb|ADW14690.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter sp. M18]
Length = 716
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 112/195 (57%), Gaps = 19/195 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA F + H GQ R +G+PYL H + ILA L K + VV G+LHD V+D
Sbjct: 23 LRKAYVFCAKVHQGQTRLSGEPYLIHPMEVAGILADL-----KLDLPAVVTGLLHDTVED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ +E FG EVA+LV GV+++ ++ T +A + R MLL
Sbjct: 78 TLTTHEELESLFGAEVARLVDGVTKIG------------KIHFKTKEESQAENFRKMLLA 125
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+L+KLADRLHNMRT+ P K R +A+ETL I+ +A+RLG+ +K ELEDL
Sbjct: 126 MATDIRVILVKLADRLHNMRTLQYQPEPKQRTIAKETLDIYAPIANRLGISWVKGELEDL 185
Query: 284 CFAVL--QMRADLAS 296
F L Q+ DLAS
Sbjct: 186 SFRYLEPQLYYDLAS 200
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K LYSI+ KM+ ++V I ++YD A+RV V D I+ CY +L
Sbjct: 228 GIKGDVSGRSKHLYSIYRKMQSRNVDIDEIYDLIAIRVSVDD---------IRECYEVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H W PI G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE G+AAH
Sbjct: 279 VIHSTWKPIPGRFKDYIAMPKGNMYQSLHTTVIGPYGERMEVQIRTVEMHRVAESGIAAH 338
Query: 529 WLYKE 533
W YKE
Sbjct: 339 WKYKE 343
>gi|227542210|ref|ZP_03972259.1| GTP pyrophosphokinase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227182039|gb|EEI63011.1| GTP pyrophosphokinase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 763
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + +++A A+R H G RK+GDPY+TH + I A + + TVVA
Sbjct: 44 YPKADADTIERAYHTAERLHEGVQRKSGDPYITHPLAVATISAEMGMDT-----TTVVAS 98
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + +FG EVAKLV GV+++ + LG EA
Sbjct: 99 LLHDTVEDTEYTLEDLTRDFGAEVAKLVDGVTKIDKV---------------ALGAAAEA 143
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DDPRV++IK++DRLHNMRT+ LPP K A++TL + LA RLGL
Sbjct: 144 ETIRKMVVAMADDPRVLVIKVSDRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGLA 203
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 204 SVKWELEDLSFAIL 217
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +SI+ KM + ++++D +R++V K CY + ++H L+
Sbjct: 263 RPKHYWSIYKKMTDRGHDFNELFDLVGIRILVDTK---------ALCYEAIGVMHSLYPA 313
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI NP+ Y+SLHT + GP+G LEVQ+RT +MH AE+G+AAHW YKET
Sbjct: 314 LPGRFKDYISNPRYGVYESLHTTLLGPNGKPLEVQVRTHEMHYQAEYGIAAHWRYKETKG 373
Query: 537 K 537
K
Sbjct: 374 K 374
>gi|167032269|ref|YP_001667500.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida GB-1]
gi|166858757|gb|ABY97164.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida GB-1]
Length = 746
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|451936564|ref|YP_007460418.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777487|gb|AGF48462.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 279
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ RLK +YSI++KMR K++ K+YD A+R+VV D I+ CY +LD
Sbjct: 155 GIKSEINGRLKHIYSIWNKMRIKNIDFAKLYDLSAVRIVVDD---------IKTCYIVLD 205
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H+LW I EFDDYI PK +GYQSLHT V D +E+QIRT MH +AEHGLAAH
Sbjct: 206 IIHKLWNHIPEEFDDYISKPKANGYQSLHTVVIDKDNYLIEIQIRTYNMHNFAEHGLAAH 265
Query: 529 WLYKETGN 536
W YK+ N
Sbjct: 266 WYYKKFRN 273
>gi|239986442|ref|ZP_04707106.1| putative ppGpp synthetase [Streptomyces roseosporus NRRL 11379]
Length = 818
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 99 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 153
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L +++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 154 DTEYGLDTLKRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 199
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 200 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 259
Query: 283 LCFAVL 288
L FA+L
Sbjct: 260 LAFAIL 265
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 304 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 354
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 355 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 414
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 415 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 441
>gi|424776746|ref|ZP_18203724.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Alcaligenes sp. HPC1271]
gi|422888169|gb|EKU30560.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Alcaligenes sp. HPC1271]
Length = 759
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A F+ +AH GQFR +G+PY++H I I A K D +++ +LHDV+
Sbjct: 68 ERVREAYRFSDQAHLGQFRASGEPYISHPIAVTEICA-----GWKLDTDALMSALLHDVI 122
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG +VA++V G+S+L + T ++A+ R ML
Sbjct: 123 EDQDVTKQELAEKFGTDVAEIVDGLSKLE------------RLEFATKTQQQADSFRKML 170
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R VAQETL I+ +A RLGL AL EL+
Sbjct: 171 LAMSRDVRVILIKLADRLHNMRTLDAVKPEKRRRVAQETLDIYAPIAHRLGLNALFRELQ 230
Query: 282 DLCFAVL 288
D CF +
Sbjct: 231 DRCFKAI 237
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R KSLYSIF KM + V D RV+V + CY L
Sbjct: 275 GIDAEISGREKSLYSIFCKMVEQKKSFSDVLDIYGFRVIVH---------TLPECYLSLG 325
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT++M AE G+A+H
Sbjct: 326 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLIGPYGTPVEFQFRTREMDHVAEEGVASH 385
Query: 529 WLYKE---TGNKLQ 539
WLYKE T N LQ
Sbjct: 386 WLYKEDDVTLNDLQ 399
>gi|333371965|ref|ZP_08463903.1| GTP diphosphokinase [Desmospora sp. 8437]
gi|332975146|gb|EGK12048.1| GTP diphosphokinase [Desmospora sp. 8437]
Length = 737
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 16/181 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
EQV+KA FA AH GQ RK+G+ Y+ H + ILA L + T+++ ILHDVV
Sbjct: 41 EQVEKAYLFAAEAHRGQTRKSGEEYIHHPVAVAGILAEL-----QMDATTLISAILHDVV 95
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L ++E EFG+ VA++V G+++L + + + +A + R M
Sbjct: 96 EDTGATLETVEAEFGETVAQIVDGLTKL-----------KQRMKYKSTAEHQAENHRKMF 144
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LP AK R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 145 VAMAQDIRVILIKLADRLHNMRTLKYLPEAKRRRIAKETLEIFAPLAHRLGISTIKWELE 204
Query: 282 D 282
D
Sbjct: 205 D 205
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
Query: 393 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 450
E+ L++ + + GM ++ +S R K +YSI+ KM + +++YD A+RV+V
Sbjct: 231 EKYLDEVIATIRERLEGMNLSADISGRPKHIYSIYRKMVKDHKQFNEIYDLLAVRVIVD- 289
Query: 451 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 510
+I+ CY++L I+H +W P+ G F DYI PK + YQSLHT V GP G +EV
Sbjct: 290 --------SIRDCYAVLGIIHTIWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGEPIEV 341
Query: 511 QIRTQKMHEYAEHGLAAHWLYKE 533
QIRT++MH AE+G+AAHW YKE
Sbjct: 342 QIRTREMHRIAEYGIAAHWAYKE 364
>gi|24371957|ref|NP_715999.1| bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT
[Shewanella oneidensis MR-1]
gi|24345803|gb|AAN53444.1| bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT
[Shewanella oneidensis MR-1]
Length = 701
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 20/203 (9%)
Query: 86 FIVDGVDVTGYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
++ +G+ + EQV+ +A A+ AH GQ R +G+PY+TH + RILA +
Sbjct: 2 YLFEGLKESASGYLEPEQVELLKQAYQVARDAHEGQMRTSGEPYITHPVAVARILAEM-- 59
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+ +T++A +LHD ++D + + E FG+ VA+LV GVS+L ++L R ++
Sbjct: 60 ---RLDHETLMAALLHDTIEDTYVTKEDLAERFGESVAELVEGVSKL---DKLKFRDKK- 112
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+A + R M++ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL
Sbjct: 113 --------EAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLE 164
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
I+ +A+RLG+ +K ELEDL F
Sbjct: 165 IYAPIANRLGIHNIKTELEDLGF 187
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 12/130 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+LYSI++KM+ K++ +V D A RV+V +I CY +L
Sbjct: 228 GIKGKVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIVD---------SIDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +E+QIRT+ M + A+ G+AAH
Sbjct: 279 AMHGLYKPRPGRFKDYIAIPKANGYQSLHTSLFGPHGVPVEIQIRTEDMDQMADKGVAAH 338
Query: 529 WLYK---ETG 535
W YK ETG
Sbjct: 339 WAYKGGAETG 348
>gi|77460438|ref|YP_349945.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fluorescens Pf0-1]
gi|398979244|ref|ZP_10688299.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
gi|77384441|gb|ABA75954.1| GTP pyrophosphokinase [Pseudomonas fluorescens Pf0-1]
gi|398135907|gb|EJM25009.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
Length = 747
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|422658161|ref|ZP_16720597.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331016788|gb|EGH96844.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 599
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG-H 211
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGIQ 140
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|28868900|ref|NP_791519.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852139|gb|AAO55214.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 744
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSSSNHYEEKI 381
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 28 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 82
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 83 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 137
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 138 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 197
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 198 GIGHIKWELEDLSFRYLE 215
>gi|422016021|ref|ZP_16362611.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Providencia
burhodogranariea DSM 19968]
gi|414095468|gb|EKT57130.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Providencia
burhodogranariea DSM 19968]
Length = 705
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA A+ AH GQ R +G+PY+TH + ILA + + +T++A +LHDV+
Sbjct: 21 ELLKKAYVVARDAHEGQTRSSGEPYITHPVAVACILAQM-----RLDHETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + IEE FG VA LV GVS+L +N ++ +A + R M+
Sbjct: 76 EDTPATFQDIEELFGTTVAGLVEGVSKLDKLNFRDKKE------------AQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 MAMVKDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GVLCRVSGREKHLYSIYRKMHLKEQRFHSIMDIYAFRVIVKD---------VDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHNLYKPRPGRIKDYIAIPKANGYQSLHTSLIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 529 WLYKETG 535
W YKE G
Sbjct: 339 WAYKEQG 345
>gi|418702279|ref|ZP_13263190.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758798|gb|EKR25024.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 674
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D R +LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRAILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 188 LEDLAFQIL 196
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 IYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|393757756|ref|ZP_10346580.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393165448|gb|EJC65497.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 720
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V++A F+ +AH GQFR +G+PY++H I I A K D +++ +LHDV+
Sbjct: 29 ERVREAYRFSDQAHLGQFRASGEPYISHPIAVTEICA-----GWKLDTDALMSALLHDVI 83
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + E+FG +VA++V G+S+L + T ++A+ R ML
Sbjct: 84 EDQDVTKQELAEKFGTDVAEIVDGLSKLE------------RLEFATKTQQQADSFRKML 131
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ A+ P K R VAQETL I+ +A RLGL AL EL+
Sbjct: 132 LAMSRDVRVILIKLADRLHNMRTLDAVKPEKRRRVAQETLDIYAPIAHRLGLNALFRELQ 191
Query: 282 DLCFAVL 288
D CF +
Sbjct: 192 DRCFKAI 198
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R KSLYSIF KM + V D RV+V + CY L
Sbjct: 236 GIDAEISGREKSLYSIFCKMVEQKKSFSDVLDIYGFRVIVH---------TLPECYLSLG 286
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+L+ P+ G+F DYI PK +GYQSLHT + GP G+ +E Q RT++M AE G+A+H
Sbjct: 287 TLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLIGPYGTPVEFQFRTREMDHVAEEGVASH 346
Query: 529 WLYKE---TGNKLQ 539
WLYKE T N LQ
Sbjct: 347 WLYKEDDVTLNDLQ 360
>gi|384044791|ref|YP_005492808.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(PpGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus megaterium
WSH-002]
gi|345442482|gb|AEN87499.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(PpGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus megaterium
WSH-002]
Length = 732
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FAK AH Q+RK+G+PY+ H I IL L T+ AG LHDVV+D
Sbjct: 28 VQKAYDFAKEAHKEQYRKSGEPYIIHPIQVAGILVDLDMDPA-----TIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +E+ F +EVA LV GV++L + + ++A + R M +
Sbjct: 83 TEITLKDLEKAFNEEVAMLVDGVTKLG------------KIKYKSKEEQQAENHRKMFVA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++V +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 SIKVEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNMYQSLHTTVIGPKGDPLEVQIRTFDMHQIAEYGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|227488793|ref|ZP_03919109.1| GTP pyrophosphokinase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091215|gb|EEI26527.1| GTP pyrophosphokinase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 750
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + +++A A+R H G RK+GDPY+TH + I A + + TVVA
Sbjct: 31 YPKADADTIERAYHTAERLHEGVQRKSGDPYITHPLAVATISAEMGMDT-----TTVVAS 85
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L + +FG EVAKLV GV+++ + LG EA
Sbjct: 86 LLHDTVEDTEYTLEDLTRDFGAEVAKLVDGVTKIDKV---------------ALGAAAEA 130
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DDPRV++IK++DRLHNMRT+ LPP K A++TL + LA RLGL
Sbjct: 131 ETIRKMVVAMADDPRVLVIKVSDRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGLA 190
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 191 SVKWELEDLSFAIL 204
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +SI+ KM + ++++D +R++V K CY + ++H L+
Sbjct: 250 RPKHYWSIYKKMTDRGHDFNELFDLVGIRILVDTK---------ALCYEAIGVMHSLYPA 300
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
+ G F DYI NP+ Y+SLHT + GP+G LEVQ+RT +MH AE+G+AAHW YKET
Sbjct: 301 LPGRFKDYISNPRYGVYESLHTTLLGPNGKPLEVQVRTHEMHYQAEYGIAAHWRYKETKG 360
Query: 537 K 537
K
Sbjct: 361 K 361
>gi|330718281|ref|ZP_08312881.1| GTP pyrophosphokinase [Leuconostoc fallax KCTC 3537]
Length = 745
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A +A H Q RK+G+PY+ H I ILA L K TVVAG LHDVV+D
Sbjct: 28 VKAAYEWAADLHKEQLRKSGEPYIIHPIQVAGILADL-----KMDTATVVAGYLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +E++FGD VA+++ GV+++S I + +Q L A + R +LL
Sbjct: 83 TPATLEDVEDKFGDTVARIIDGVTKISKI--------KYKSSQEQL----AENHRKLLLA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+++KLADRLHNMRT+ AL P K + +A ETL I+ LA RLG+ A+K ELEDL
Sbjct: 131 MSQDIRVIIVKLADRLHNMRTLGALRPDKQQRIANETLDIYAPLADRLGISAMKWELEDL 190
Query: 284 CFAVLQ 289
+ L
Sbjct: 191 SLSYLN 196
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K +YSI+ KM K+ ++YD A+R++ I Y++L +H W P
Sbjct: 242 RPKHIYSIYRKMVDKNKNFEEIYDLSAVRILTN---------TIPDTYAILGAIHSKWTP 292
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK +GYQSLHT V GP G LEVQIRT MHE AE G+AAHW YK+
Sbjct: 293 IPGRFKDYIALPKANGYQSLHTTVIGPGGRPLEVQIRTHDMHEIAEFGVAAHWAYKKNKG 352
Query: 537 KLQSISSMDESD 548
Q D+++
Sbjct: 353 SDQEAKIKDQTE 364
>gi|306820100|ref|ZP_07453748.1| GTP diphosphokinase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551878|gb|EFM39821.1| GTP diphosphokinase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 739
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA +AK H GQ R++G+ Y+ H + ILA L + V ++ AG++HDVV+D
Sbjct: 21 IEKAFEYAKSKHEGQVRRSGEKYIIHPVEVANILAEL-----ELDVASIAAGLMHDVVED 75
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ ++ FG+E+AKLV GV++L + T +A +LR M +
Sbjct: 76 TEVTSDQMKSMFGEEIAKLVDGVTKLG------------KIAYKTKEENQAENLRKMFMA 123
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DD RVVLIKLADRLHNMRT+ +PP KA ++ETL I+ +A RLG++ +K E+ED+
Sbjct: 124 MGDDIRVVLIKLADRLHNMRTLKFMPPYKAVIKSKETLEIFAPIAERLGMFKIKWEMEDI 183
Query: 284 CF 285
Sbjct: 184 AL 185
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
IP + R K+LYSI+ KM+ K+ ++YD A+RV+V K CY +
Sbjct: 226 IPNNHFEIYGREKNLYSIYKKMKFKNKAFEEIYDFLAIRVIVQTKAE---------CYWV 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L IVH +W PI DYI NPK + YQSLHT V GP G +EVQIRT++MH+ AE+G+A
Sbjct: 277 LGIVHGMWKPIPDRNKDYIGNPKVNNYQSLHTTVFGPGGELVEVQIRTEEMHKTAEYGIA 336
Query: 527 AHWLYKE 533
AHW YK+
Sbjct: 337 AHWKYKQ 343
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 786
E+ ++ K+ LR ++ W++++ QS + + V V P G+I+
Sbjct: 350 ESEMDKKLAWLRQLMDWQKEVTDPDEYMQS---------LKTDLYSHQVFVFTPKGDIIE 400
Query: 787 LRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 828
L +GST D A K+ + K V +N ++V +TELK+G IVE+
Sbjct: 401 LPAGSTPIDMAYKIHTNVGNKCVGAKINNKIVPLDTELKNGQIVEI 446
>gi|148549268|ref|YP_001269370.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida F1]
gi|421522586|ref|ZP_15969227.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
gi|148513326|gb|ABQ80186.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida F1]
gi|402753686|gb|EJX14179.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
Length = 746
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|421111743|ref|ZP_15572216.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
gi|410802939|gb|EKS09084.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
Length = 674
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYNVSERAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|392416165|ref|YP_006452770.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium chubuense
NBB4]
gi|390615941|gb|AFM17091.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium chubuense
NBB4]
Length = 794
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 110/194 (56%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +QKA A++ H Q RK+GDPY+TH + ILA L T++A
Sbjct: 79 YPKADLSLLQKAYEVAEQRHADQLRKSGDPYITHPLAVANILAEL-----GMDTTTLIAA 133
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ EFG EV LV GV++L V GT E
Sbjct: 134 LLHDTVEDTGYTLEALTAEFGTEVGHLVDGVTKLD------------KVALGTAA--EGE 179
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 180 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 239
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 240 VKWELEDLSFAILH 253
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 291 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 341
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 342 VHSLWQPIAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTIDMHKTAEYGIAAHW 401
Query: 530 LYKETGNK 537
YKE +
Sbjct: 402 RYKEAKGR 409
>gi|399991326|ref|YP_006571566.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT
[Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|400755835|ref|YP_006564203.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT
[Phaeobacter gallaeciensis 2.10]
gi|398654988|gb|AFO88958.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT
[Phaeobacter gallaeciensis 2.10]
gi|398655881|gb|AFO89847.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT
[Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 710
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 29/218 (13%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAG 155
P N +++ A AF ++ H GQFR +G+PY TH + IL + +R D T++
Sbjct: 16 PRTNADRIADAYAFGEQMHDGQFRHSGEPYFTHPVAVAAIL------TEQRLDDATIITA 69
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD ++D S I FGDEVA LV GV++L+ N+ + ++A
Sbjct: 70 LLHDTIEDTKASYDEISTRFGDEVAMLVDGVTKLT------------NLQLSSRETKQAE 117
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+ R + + M D RV+L+KLADRLHNMRTI A+ P K A+ET+ I+ LA R+G+
Sbjct: 118 NFRKLFMAMSKDLRVILVKLADRLHNMRTIKAMRPDKQAQKARETMDIYAPLAGRMGMQW 177
Query: 276 LKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 178 MREELEDLAFRVL----------NPEGRQSIIRRFVTL 205
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 14/170 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ KD G ++ D R++ + + CY L
Sbjct: 228 GIEAEVFGRAKKPYSIWRKMQEKDQGFSRLSDIYGFRIITASE---------EDCYRALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H+ W + G F DYI PK +GY+S+H V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 279 AIHQRWRAVPGRFKDYISQPKSNGYRSIHATVSGRDGKRVEVQIRTRQMHDVAETGVAAH 338
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 578
W Y++ G + ++ ++D + AS + D ++ D D F + L+M
Sbjct: 339 WSYRD-GVRSENPFAVDPAKWIASLTEQFDAEE----DHDEFLEAVKLEM 383
>gi|398342460|ref|ZP_10527163.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
inadai serovar Lyme str. 10]
Length = 674
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV--AGILHD 159
E V+KA ++ AH GQFR +G+PY+ H + G IL L +D V AGILHD
Sbjct: 27 ELVEKAYKVSEEAHQGQFRLSGEPYIVHPLQVGYILYEL-------GLDEKVISAGILHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + ++ +FG E+ +LV GV+++S I R E A ++R
Sbjct: 80 VIEDTKYTRDNMVSDFGTEITQLVEGVTKISEIKSQSRET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ PP K R +A ETL ++ +A RLG++ +K+E
Sbjct: 128 IIIATIQDIRVILIKLADKTHNMRTLSFQPPEKQRRIANETLSLYAPIAGRLGIYKVKSE 187
Query: 280 LEDLCFAVL 288
LEDL F V+
Sbjct: 188 LEDLAFQVI 196
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 22/141 (15%)
Query: 406 YIPGMEVTLSSRL-------------KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
YI +++ L RL K +SI+ KM+ K+ +++D RA+R++ +
Sbjct: 218 YIDKLQIILKQRLAEININAQVDGRAKHFFSIYRKMKTKEKTFDEIFDLRAIRIITDE-- 275
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
I+ CY +L IVH LW P+ G F DYI PK + YQSLHT V GPDG LEVQI
Sbjct: 276 -------IKDCYGVLGIVHTLWTPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQI 328
Query: 513 RTQKMHEYAEHGLAAHWLYKE 533
RT +M+ AE G+AAHW+YKE
Sbjct: 329 RTAEMNAIAEFGIAAHWVYKE 349
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
V V P GEI++L G+T D A + VGL K +N +++ TEL+ GD VEV V
Sbjct: 393 VFVFTPKGEIIQLPKGATVLDFAFRIHTDVGLHCKGAKINSRMIPLRTELRSGDQVEVVV 452
>gi|309775429|ref|ZP_07670432.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 3_1_53]
gi|308916818|gb|EFP62555.1| GTP diphosphokinase [Erysipelotrichaceae bacterium 3_1_53]
Length = 733
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 27/195 (13%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML +G + T+ AG LHD
Sbjct: 25 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML--RTGPK---TIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 214
VV+D ++ + + FG+EVA LV V+++ G L ++ A
Sbjct: 80 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 122
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++ R + + M D RV+LIKLADRLHNMRT+ + P K + +A ETL ++ +A RLG+
Sbjct: 123 SNHRKIFIAMAKDVRVILIKLADRLHNMRTLQYMTPEKQKKIASETLEVYAPIAHRLGIS 182
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDLCF L
Sbjct: 183 DIKNELEDLCFQYLN 197
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R++ CY L +H + P
Sbjct: 242 RSKHLYSIYKKMITKNKRFEEILDLLAIRIITDSDTA---------CYETLGYIHAKYRP 292
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW YKE N
Sbjct: 293 IPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWRYKENLN 352
>gi|421100332|ref|ZP_15560964.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
gi|410796642|gb|EKR98769.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
Length = 674
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++RAH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 27 ESVQKAYDVSERAHQGQFRLSGEPYIIHPLQVGFILYEL-------GLDEKVICAGLLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 80 VIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RLG++ +K+E
Sbjct: 128 IIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 187
Query: 280 LEDLCFAVL 288
LEDL F VL
Sbjct: 188 LEDLAFQVL 196
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 530 LYKE 533
+YKE
Sbjct: 346 MYKE 349
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|270293217|ref|ZP_06199428.1| GTP diphosphokinase [Streptococcus sp. M143]
gi|270279196|gb|EFA25042.1| GTP diphosphokinase [Streptococcus sp. M143]
Length = 738
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 41/271 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V KA+ +A H GQ+RK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VHKALVYAVECHSGQYRKSGEPYIIHPIQVAGILAKL-----KLDAVTVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +E+EFG EV +V GV++L V +L + A + R ML+
Sbjct: 83 TDATLDDLEQEFGHEVRIIVDGVTKLG------------KVEYKSLEEQLAENHRKMLMA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+L+KL+DRLHNMRT+ L K +++ET+ I+ LA RLG+ ++K ELEDL
Sbjct: 131 MSEDIRVILVKLSDRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISSVKWELEDL 190
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
F L + + + + RR ER A DE T +E+ S ++L
Sbjct: 191 SFRYL----NPTEFYKITHMMKEKRR-----------EREALVDEVVTKLEEYT-SERNL 234
Query: 344 LEAVV--PFDILS------DRRKRTKFLHDL 366
+ P I S D++KR + ++DL
Sbjct: 235 KGKIYGRPKHIYSIYRKMQDKKKRFEEIYDL 265
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R ++ ++ Y++L VH L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFEEIYDLIAIRCILDTQSD---------VYAMLGYVHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WKPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|145224394|ref|YP_001135072.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium gilvum PYR-GCK]
gi|315444726|ref|YP_004077605.1| RelA/SpoT family (p)ppGpp synthetase [Mycobacterium gilvum Spyr1]
gi|145216880|gb|ABP46284.1| (p)ppGpp synthetase I, SpoT/RelA [Mycobacterium gilvum PYR-GCK]
gi|315263029|gb|ADT99770.1| (p)ppGpp synthetase, RelA/SpoT family [Mycobacterium gilvum Spyr1]
Length = 790
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +QKA A++ H Q RK+GDPY+TH + ILA L T++A
Sbjct: 75 YPKADLTLLQKAYEVAEQRHADQLRKSGDPYITHPLAVANILAEL-----GMDTTTLIAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ +EFG EV LV GV++L V GT E
Sbjct: 130 LLHDTVEDTGYTLEALTQEFGVEVGHLVDGVTKLD------------KVALGTAA--EGE 175
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 176 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 235
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 236 VKWELEDLSFAILH 249
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 287 IKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 337
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 338 VHSLWQPIAGRFKDYIAQPRFGVYQSLHTTVVGPEGKPLEVQIRTIDMHKTAEYGIAAHW 397
Query: 530 LYKETGNK 537
YKE +
Sbjct: 398 RYKEVKGR 405
>gi|421739510|ref|ZP_16177818.1| (p)ppGpp synthetase, RelA/SpoT family [Streptomyces sp. SM8]
gi|406692146|gb|EKC95859.1| (p)ppGpp synthetase, RelA/SpoT family [Streptomyces sp. SM8]
Length = 836
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 119 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 173
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 174 DTEYGLDALRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 219
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 220 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 279
Query: 283 LCFAVL 288
L FA+L
Sbjct: 280 LAFAIL 285
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 324 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 374
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 375 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 434
Query: 530 LYKE 533
YK+
Sbjct: 435 KYKQ 438
>gi|402310465|ref|ZP_10829429.1| putative GTP diphosphokinase [Eubacterium sp. AS15]
gi|400368388|gb|EJP21399.1| putative GTP diphosphokinase [Eubacterium sp. AS15]
Length = 739
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA +AK H GQ R++G+ Y+ H + ILA L + V ++ AG++HDVV+D
Sbjct: 21 IEKAFEYAKSKHEGQVRRSGEKYIIHPVEVANILAEL-----ELDVASIAAGLMHDVVED 75
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ ++ FG+E+AKLV GV++L + T +A +LR M +
Sbjct: 76 TEVTSDQMKSMFGEEIAKLVDGVTKLG------------KIAYKTKEENQAENLRKMFMA 123
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DD RVVLIKLADRLHNMRT+ +PP KA ++ETL I+ +A RLG++ +K E+ED+
Sbjct: 124 MGDDIRVVLIKLADRLHNMRTLKFMPPYKAVIKSKETLEIFAPIAERLGMFKIKWEMEDI 183
Query: 284 CF 285
Sbjct: 184 AL 185
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
IP + R K+LYSI+ KM+ K+ ++YD A+RV+V K CY +
Sbjct: 226 IPNNHFEIYGREKNLYSIYKKMKFKNKAFEEIYDFLAIRVIVQTKAE---------CYWV 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L IVH +W PI DYI NPK + YQSLHT V GP G +E+QIRT++MH+ AE+G+A
Sbjct: 277 LGIVHSMWKPIPDRNKDYIGNPKVNNYQSLHTTVFGPGGELVEIQIRTEEMHKTAEYGIA 336
Query: 527 AHWLYKE 533
AHW YK+
Sbjct: 337 AHWKYKQ 343
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 727 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 786
E+ ++ K+ LR ++ W++++ +S + + V V P G+I+
Sbjct: 350 ESEMDKKLAWLRQLMDWQKEVTDPDEYMKS---------LKTDLYSHQVFVFTPKGDIIE 400
Query: 787 LRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 828
L +GST D A K+ + K V +N ++V +TELK+G IVE+
Sbjct: 401 LPAGSTPIDMAYKIHTNVGNKCVGAKINNKIVTLDTELKNGQIVEI 446
>gi|374702789|ref|ZP_09709659.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. S9]
Length = 748
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIEADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PQMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTAAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ + + L
Sbjct: 83 DSLVAAVLYRGVREGTVELAAVHQRFGPVVAKLIEGVLRMAAISASMNPR-----DSMVL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + ++LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|359143861|ref|ZP_09178076.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces sp. S4]
Length = 836
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 119 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 173
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 174 DTEYGLDALRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 219
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 220 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 279
Query: 283 LCFAVL 288
L FA+L
Sbjct: 280 LAFAIL 285
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 324 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 374
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 375 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 434
Query: 530 LYKE 533
YK+
Sbjct: 435 KYKQ 438
>gi|145297151|ref|YP_001139992.1| guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase [Aeromonas
salmonicida subsp. salmonicida A449]
gi|418362494|ref|ZP_12963125.1| guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase [Aeromonas
salmonicida subsp. salmonicida 01-B526]
gi|142849923|gb|ABO88244.1| guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase [Aeromonas
salmonicida subsp. salmonicida A449]
gi|356686289|gb|EHI50895.1| guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase [Aeromonas
salmonicida subsp. salmonicida 01-B526]
Length = 704
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 19/216 (8%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E++++A A+ AH GQ R +G+PY+TH + RIL + + +T++A +LHDV+
Sbjct: 21 EKLRQAYVVARDAHQGQMRSSGEPYITHPVAVARILGDM-----RLDHETLMAAVLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + FGD VA+LVAGVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTPVTKADLAALFGDAVAELVAGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ +A+RLG+ +K ELE
Sbjct: 124 MAMTQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIFAPIANRLGIHTMKNELE 183
Query: 282 DLCF-AVLQMRADLASMWSPRNRVGYSRRITTIVSS 316
+L F A+ MR+ + R R G R I + S
Sbjct: 184 ELGFEALYPMRSRVLRESVRRAR-GNRREIIDSIQS 218
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 14/167 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K+L+SI++KM +K++ H+V D A RV V D I CY +L
Sbjct: 228 GIDSQVSGREKNLFSIYNKMEKKELQFHEVMDIYAFRVRVKD---------IDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QMHSLYKPRPGRFKDYIAIPKTNGYQSLHTSLVGPHGVPVEVQIRTEFMDQMADKGVAAH 338
Query: 529 WLYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
W YK+ G+ + + + +S +E S + + TDLF
Sbjct: 339 WAYKQDGDSSGTTAQIRAQRWMQSLLELQQSAGSSFEFIEGVKTDLF 385
>gi|117922244|ref|YP_871436.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Shewanella sp.
ANA-3]
gi|117614576|gb|ABK50030.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. ANA-3]
Length = 700
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 20/203 (9%)
Query: 86 FIVDGVDVTGYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
++ +G+ + EQV+ +A A+ AH GQ R +G+PY+TH + RILA +
Sbjct: 2 YLFEGLKESASGYLEPEQVELLKQAYQVARDAHEGQMRTSGEPYITHPVAVARILAEM-- 59
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+ +T++A +LHD ++D + + E+FG+ VA+LV GVS+L ++L R ++
Sbjct: 60 ---RLDHETLMAALLHDTIEDTHVTKEDLAEQFGEAVAELVEGVSKL---DKLKFRDKK- 112
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+A + R M++ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL
Sbjct: 113 --------EAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLE 164
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
I+ +A+RLG+ +K ELEDL F
Sbjct: 165 IYAPIANRLGIHNIKTELEDLGF 187
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K+LYSI++KM+ K++ +V D A RV+V +I CY +L
Sbjct: 228 GIKGKVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIVD---------SIDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H L+ P G F DYI PK +GYQSLHT++ GP G +E+QIRT+ M + A+ G+AAH
Sbjct: 279 AMHGLYKPRPGRFKDYIAIPKANGYQSLHTSLFGPHGVPVEIQIRTEDMDQMADKGVAAH 338
Query: 529 WLYK 532
W YK
Sbjct: 339 WAYK 342
>gi|83941555|ref|ZP_00954017.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sulfitobacter sp. EE-36]
gi|83847375|gb|EAP85250.1| guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative
[Sulfitobacter sp. EE-36]
Length = 716
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 31/219 (14%)
Query: 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVA 154
P N+ Q++ A + ++ H GQFR +G+PY TH + IL ++ +D T++
Sbjct: 20 PKTNENQIRLAYEYGQQMHEGQFRHSGEPYFTHPVSVAAILT-------EQQLDDATIIT 72
Query: 155 GILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA 214
+LHD ++D S S++++FG +VA+LV GV++L+ + ++N N+ ++A
Sbjct: 73 ALLHDTIEDTKASYSSVDDKFGHDVAELVDGVTKLTNL--------QLNSNET----KQA 120
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+ R + + M D RV+L+KLADRLHNMRTI ++ P K A+ET+ I+ LA R+G+
Sbjct: 121 ENFRKLFMAMSKDLRVILVKLADRLHNMRTIKSMRPDKQIQKARETMDIYAPLAGRMGMQ 180
Query: 275 ALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTI 313
++ ELEDL F VL +P R RR T+
Sbjct: 181 WMREELEDLAFRVL----------NPEGRQSIIRRFITL 209
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K YSI+ KM+ K ++ D RV+ ++ CY L
Sbjct: 232 GIEAEVFGRAKKPYSIWRKMQEKQQSFSRLSDIYGFRVITTSEDE---------CYRALG 282
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+HR W + G F DYI PK +GY+S+HT V G DG +EVQIRT++MH+ AE G+AAH
Sbjct: 283 TIHRRWRAVPGRFKDYISQPKTNGYRSIHTTVSGRDGKRVEVQIRTRQMHDVAESGVAAH 342
Query: 529 WLYKE 533
W Y++
Sbjct: 343 WSYRD 347
>gi|395444967|ref|YP_006385220.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397696412|ref|YP_006534295.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
gi|388558964|gb|AFK68105.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397333142|gb|AFO49501.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
Length = 741
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 132
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 133 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 192
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 193 HRLGIGHIKWELEDLSFRYLE 213
>gi|386013472|ref|YP_005931749.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
gi|313500178|gb|ADR61544.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
Length = 741
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 132
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 133 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 192
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 193 HRLGIGHIKWELEDLSFRYLE 213
>gi|83590516|ref|YP_430525.1| (p)ppGpp synthetase SpoT/RelA [Moorella thermoacetica ATCC 39073]
gi|83573430|gb|ABC19982.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Moorella
thermoacetica ATCC 39073]
Length = 717
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+ A A AH GQ R++G+ Y+TH + ILA L + V T+ A +LHDVV+D
Sbjct: 22 VRDAYTLAATAHRGQKRRSGEDYITHPLQVAAILAEL-----QLDVVTIAAALLHDVVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL +I+E FG+EVA LV GV++LS + T ++A LR M L
Sbjct: 77 TPVSLDTIKELFGEEVALLVDGVTKLS------------RLEYKTKEEQQAETLRKMFLT 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ PP K + +A+ETL I+ LA RLG++ LK ELED
Sbjct: 125 MAQDIRVILIKLADRLHNMRTLKYHPPEKQQEIARETLEIFAPLAHRLGIFRLKWELEDQ 184
Query: 284 CFAVLQ 289
L+
Sbjct: 185 SLRYLE 190
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI++KM ++ + ++YD A+RV+V ++ CY++L
Sbjct: 227 GIKADIQGRPKHFYSIYNKMVKQGKELSEIYDLIAVRVIVD---------TVKECYAVLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G F DY+ PKP+ YQSLHT V GP+G E+QIRT +MH AE+G+AAH
Sbjct: 278 VVHAIWKPIPGRFKDYVAMPKPNMYQSLHTTVIGPNGDPFEIQIRTWEMHRTAEYGIAAH 337
Query: 529 WLYKETG 535
W YKE G
Sbjct: 338 WRYKEGG 344
>gi|344941876|ref|ZP_08781164.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
gi|344263068|gb|EGW23339.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
Length = 710
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 112/206 (54%), Gaps = 20/206 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K +YSI+ KMRRK + I ++YD A+RV+V + + CY+ L
Sbjct: 227 GISAEIYGRPKHIYSIWKKMRRKQLDIDELYDLLAVRVIVDN---------LTACYATLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW I EFDDYI NPK +GYQSLHT + P+G+ +EVQIRTQ+MH++AE G+AAH
Sbjct: 278 MVHSLWQTIPKEFDDYIANPKENGYQSLHTVIIDPEGNRIEVQIRTQQMHDFAELGVAAH 337
Query: 529 WLYKETGNKLQSISS--------MDESDIEASSSLSKDTDDHNPLDTDLFQK--YSSLKM 578
W YKE G +I +DE+ E S D ++LF Y
Sbjct: 338 WSYKEGGKHDAAIEKNIASLRKLLDETSPERSRKEGSDEALSENFRSELFNDRVYVLTPA 397
Query: 579 GHPVIRVEGSNLL-AAVIIRVEKGGR 603
G + V+GS L A I E G R
Sbjct: 398 GKLIDLVKGSTPLDFAYAIHTEVGHR 423
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 149 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 208
+ T++A IL D +I+E+FG+ VA LV V+ ++N+L + + T
Sbjct: 58 LKTILAAILSDPRLAHLNPKPNIKEQFGETVATLVNDVN---WLNKLT-----VYSLEMT 109
Query: 209 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
+ LR MLL M D R VLIKLA RL ++ + R +AQETL I+ +A
Sbjct: 110 DQPSQTETLRRMLLSMTQDVRAVLIKLAYRLQRLKVLPRESYELRRFIAQETLDIYAPIA 169
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
+R+G+ LK ELED+ F L+
Sbjct: 170 NRMGIHQLKWELEDMAFRYLK 190
>gi|406962538|gb|EKD88859.1| hypothetical protein ACD_34C00295G0001, partial [uncultured
bacterium]
Length = 691
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 119/212 (56%), Gaps = 29/212 (13%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV-- 153
Y + + E + A +A+ AH GQ R +G+PY+THC+ ILA + V +V
Sbjct: 22 YSVADREMITHAYKYAETAHEGQKRASGEPYITHCVAVAIILAEM-------QVQPIVVS 74
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR-INVNQGTLGHE 212
A +LHD V+D +L I +EFG E+ LV GV++L+++ ++ R + + +
Sbjct: 75 AALLHDTVEDTKITLDDIRKEFGTEIGGLVDGVTKLTHLPRVSRADQHDAEIFEQITKDS 134
Query: 213 EAND-------------------LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253
EA+D LR L M +D RV+LIKLADRLHNMRT+ +P K
Sbjct: 135 EADDSLLDSQLARDRRRDLANETLRKTFLAMGEDIRVILIKLADRLHNMRTLGFMPEKKR 194
Query: 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
+ +AQETL I+ LA+RLG+W LK ELEDL F
Sbjct: 195 KRIAQETLDIFAPLANRLGIWQLKWELEDLGF 226
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 90/148 (60%), Gaps = 14/148 (9%)
Query: 388 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 447
+ A + LEK L+S + G++V +S+R K ++SI+ KM+ K+ V D R +R++
Sbjct: 251 QMQAISDKLEK--LLSDA---GVKVDISARSKHIFSIYKKMQEKNKPFELVRDLRGVRLI 305
Query: 448 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 507
V P I CYS L ++H W PI EFDDYI PK + YQSLHTA+ DG
Sbjct: 306 V---------PDIPSCYSALGLIHTNWRPIPNEFDDYIAGPKDNFYQSLHTAILYDDGKP 356
Query: 508 LEVQIRTQKMHEYAEHGLAAHWLYKETG 535
LEVQIRT +M E AE G+AAHW YKE G
Sbjct: 357 LEVQIRTPEMDENAEFGIAAHWKYKEKG 384
>gi|376284865|ref|YP_005158075.1| GTP pyrophosphokinase [Corynebacterium diphtheriae 31A]
gi|371578380|gb|AEX42048.1| GTP pyrophosphokinase [Corynebacterium diphtheriae 31A]
Length = 759
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 21/194 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + E + +A A A+R H G FRK+GDPY+TH + I A + + T+VA
Sbjct: 47 HPKADAEVLNRAYATAERLHEGVFRKSGDPYITHPLAVATIAAEIGMDT-----TTLVAA 101
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL + +FG EVA+L+ GV++L + LG EA
Sbjct: 102 LLHDTVEDTDYSLEDLTADFGAEVARLLDGVTKLDKV---------------ALGAAAEA 146
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA RLG+
Sbjct: 147 ETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMA 206
Query: 275 ALKAELEDLCFAVL 288
++K ELEDL FA+L
Sbjct: 207 SVKWELEDLSFAIL 220
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
L ST ++ + R K +SI+ KM + +++D +RV+V + N
Sbjct: 250 LTSTLKENHIDAEVMGRPKHYWSIYQKMIVRGKDFDEIFDLVGIRVLVDNVNN------- 302
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
CY+ + +VH L+ + G F DYI +PK YQSLHT V G G LEVQ+RT +MH
Sbjct: 303 --CYAAIGVVHSLYSAMPGRFKDYISSPKFGVYQSLHTTVMGDGGKPLEVQVRTHEMHYN 360
Query: 521 AEHGLAAHWLYKETGNK 537
AE G+AAHW YKET K
Sbjct: 361 AEFGIAAHWRYKETKGK 377
>gi|422667889|ref|ZP_16727749.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330980190|gb|EGH78361.1| RelA/SpoT protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 386
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNK 537
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|302132005|ref|ZP_07257995.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 747
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA ++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAGMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|226323920|ref|ZP_03799438.1| hypothetical protein COPCOM_01697 [Coprococcus comes ATCC 27758]
gi|225207469|gb|EEG89823.1| RelA/SpoT family protein [Coprococcus comes ATCC 27758]
Length = 774
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 114/194 (58%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA A+ AH GQ RK+G+ Y+ H + G ILA L + +T+VAG
Sbjct: 52 HPSADVSMIEKAYHIARDAHKGQTRKSGEEYIIHPLWVGIILAQL-----EMDKETIVAG 106
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
ILHDVV+D + I +EFGDEVA LV GV++L QL ++ V +A
Sbjct: 107 ILHDVVEDTVMTDEEIRQEFGDEVALLVDGVTKLG---QLSYSADKLEV--------QAE 155
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV++IKLADRLHNMRT+ + P K A+ET+ I+ +A RLG+
Sbjct: 156 NLRKMFLAMAKDIRVIIIKLADRLHNMRTLQYMRPEKQLEKAKETMDIYAPIAQRLGISK 215
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL Q
Sbjct: 216 IKTELDDLALKYSQ 229
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 88/141 (62%), Gaps = 9/141 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ ++ R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L
Sbjct: 266 NIDAEVNGRVKHFFSIYKKMVNQDKTVDQIYDLFAVRIIV---------DSVKDCYAALG 316
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ P+ G F DYI PK + YQSLHT + G E+QIRT++MH+ AE+G+AAH
Sbjct: 317 VIHEMYTPVPGRFKDYIAMPKANMYQSLHTTLMSSIGQPFEIQIRTKEMHKTAEYGIAAH 376
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YKE+ + +S+ + +E +
Sbjct: 377 WKYKESEDGKKSVEAKEEEKL 397
>gi|213971907|ref|ZP_03400007.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
gi|301384477|ref|ZP_07232895.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato Max13]
gi|213923332|gb|EEB56927.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
Length = 747
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|387130272|ref|YP_006293162.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM7]
gi|386271561|gb|AFJ02475.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Methylophaga sp. JAM7]
Length = 723
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 18/230 (7%)
Query: 62 IASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPI--FNDEQVQKAIAFAKRAHHGQF 119
+++ ++T++DF+ E +P I D T + E +++A +A H GQ
Sbjct: 1 MSAKPTVATELDFIQ---ESEPRLTIDDLCFATANYLEPAQVEAIRRAYHYADNCHEGQT 57
Query: 120 RKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179
R++G+ Y+TH + +LAM+ + ++AG+LHDV++D + + EFGD V
Sbjct: 58 RRSGERYITHPLAVAHVLAMM-----HMDYECIMAGLLHDVIEDTPAARADVAIEFGDTV 112
Query: 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRL 239
A+LV GV++L+ + N NQ + ++A +LR MLL M D RV+++KLADRL
Sbjct: 113 AELVEGVTKLA-------KAAFENSNQSPV-EKQAENLRKMLLAMSRDIRVIIVKLADRL 164
Query: 240 HNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
HNMRT+ L P K R +A ETL I+ +A RLG+ ++ ELEDL F VL
Sbjct: 165 HNMRTLGHLRPDKRRRIANETLEIYAPIAQRLGMNLMRCELEDLGFHVLH 214
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 92/174 (52%), Gaps = 28/174 (16%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+LYSI+ KM K + +V D A R++V D + CY +L
Sbjct: 251 GLTADIQGREKNLYSIYKKMWSKQLSFSEVMDVYAFRIIVDD---------VDACYRMLG 301
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH L+ P+ G+F DYI PK +GYQSLHT + GP G +EVQIR++ M AE G+AAH
Sbjct: 302 VVHNLYKPVQGKFKDYIAIPKANGYQSLHTVLFGPYGVPIEVQIRSRDMDHLAEAGVAAH 361
Query: 529 WLYK--ETGNK----------LQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 570
WLYK E+G LQ I M +S ++ L L DLF
Sbjct: 362 WLYKSGESGGNTLADRKARQWLQGILEMQKSSGDSEEFLEN-------LRMDLF 408
>gi|365866646|ref|ZP_09406254.1| putative ppGpp synthetase [Streptomyces sp. W007]
gi|364003919|gb|EHM25051.1| putative ppGpp synthetase [Streptomyces sp. W007]
Length = 759
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 41 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 95
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 96 DTEYGLDTLRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 141
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 142 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 201
Query: 283 LCFAVL 288
L FA+L
Sbjct: 202 LAFAIL 207
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 246 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 296
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 297 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 356
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ +DT
Sbjct: 357 KYKQ---EAVAGASKVRTDVPKNTGRGQDT 383
>gi|238852662|ref|ZP_04643072.1| GTP pyrophosphokinase [Lactobacillus gasseri 202-4]
gi|238834808|gb|EEQ27035.1| GTP pyrophosphokinase [Lactobacillus gasseri 202-4]
Length = 750
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 109/196 (55%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKNAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIEYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVRDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|435854533|ref|YP_007315852.1| (p)ppGpp synthetase, RelA/SpoT family [Halobacteroides halobius DSM
5150]
gi|433670944|gb|AGB41759.1| (p)ppGpp synthetase, RelA/SpoT family [Halobacteroides halobius DSM
5150]
Length = 722
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + V+K AK AH GQ R +G+P+L+H + +ILA L + V ++ A +LHD
Sbjct: 18 NLDLVKKGYYLAKEAHQGQMRVSGEPFLSHPLRVAQILAEL-----ELDVVSITAALLHD 72
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
VV+D + IEEEFG E+ LV GV++L+ I+ R +A LR
Sbjct: 73 VVEDTEITADEIEEEFGAEIRLLVNGVTKLNKIDFKTREEH------------QAASLRK 120
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
M L M +D RVVLIKLADRLHNMRT+ L K + A ETL I+ LA RLG+ LK E
Sbjct: 121 MFLAMAEDIRVVLIKLADRLHNMRTLNYLSEEKRKRKANETLEIYAPLAHRLGMSRLKWE 180
Query: 280 LEDLCFAVLQ 289
LEDL F L+
Sbjct: 181 LEDLSFRYLE 190
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K LYSI K+ K+ ++YD ALRV+V +++ CY +L I+H +
Sbjct: 232 IYGRPKHLYSINQKIINKNKSFDEIYDLTALRVIVD---------SVKECYQVLGILHEI 282
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G DYI PK + YQSLHT V GP G LE+QIRT +MH AE+G+AAHW YK+
Sbjct: 283 WNPMPGRIKDYIAMPKSNMYQSLHTTVIGPKGEPLEIQIRTWEMHRTAEYGIAAHWRYKD 342
Query: 534 TGN 536
GN
Sbjct: 343 -GN 344
>gi|407894164|ref|ZP_11153194.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Diplorickettsia massiliensis 20B]
Length = 281
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E+V +A FA +AH GQ R+ GDPY+TH + +ILA S + T++ +LHDV+
Sbjct: 21 ERVYQAYQFAAQAHAGQQRQNGDPYITHPLAVAQILA-----SMRMDTQTLIVALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D ++ + FG E+A+LV G+S+L+ I R +A + R ML
Sbjct: 76 EDTPIEKKALIDIFGIEIAELVEGMSKLTQIQFQSR------------AIAQAENFRKML 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D R++LIKLADRLHNMRT+ + P K R +A ETL I+ +A RLG+ A++ ELE
Sbjct: 124 LAMAKDIRIILIKLADRLHNMRTLDVVSPEKRRRIATETLDIYAPIAQRLGMHAIRVELE 183
Query: 282 DLCF 285
DLC
Sbjct: 184 DLCL 187
>gi|378952324|ref|YP_005209812.1| RelA protein [Pseudomonas fluorescens F113]
gi|359762338|gb|AEV64417.1| RelA [Pseudomonas fluorescens F113]
Length = 748
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|294501369|ref|YP_003565069.1| GTP pyrophosphokinase [Bacillus megaterium QM B1551]
gi|295706716|ref|YP_003599791.1| GTP pyrophosphokinase [Bacillus megaterium DSM 319]
gi|294351306|gb|ADE71635.1| GTP pyrophosphokinase [Bacillus megaterium QM B1551]
gi|294804375|gb|ADF41441.1| GTP pyrophosphokinase [Bacillus megaterium DSM 319]
Length = 732
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA FAK AH Q+RK+G+PY+ H I IL L T+ AG LHDVV+D
Sbjct: 28 VQKAYDFAKEAHKEQYRKSGEPYIIHPIQVAGILVDLDMDPA-----TIAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +E+ F +EVA LV GV++L + + ++A + R M +
Sbjct: 83 TEITLKDLEKAFNEEVAMLVDGVTKLG------------KIKYKSKEEQQAENHRKMFVA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++V +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 SIKVEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNMYQSLHTTVIGPKGDPLEVQIRTFDMHQIAEYGIAAH 343
Query: 529 WLYKE 533
W YKE
Sbjct: 344 WAYKE 348
>gi|390934796|ref|YP_006392301.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570297|gb|AFK86702.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 718
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA +A +AH GQ+R +G+PY+ H + ILA L + V T+ +G+LHDV++D
Sbjct: 22 ILKAYDYAVKAHKGQYRNSGEPYIVHPVEVAMILADL-----ELDVSTIASGLLHDVIED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I+ EFG E+A LV GV++L I + V Q +A ++R ML+
Sbjct: 77 TSITYEDIKNEFGQEIADLVDGVTKLGMI------EYKSKVEQ------QAENMRKMLIA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ L K + AQETL I+ +A RLG+ +K ELEDL
Sbjct: 125 MAKDIRVIMIKLADRLHNMRTLKFLSEEKQKEKAQETLEIYAPIAHRLGMSMIKWELEDL 184
Query: 284 CFAVL 288
L
Sbjct: 185 SLRYL 189
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM++++ ++YD A+RV+V ++ CY L
Sbjct: 227 GIKADVDGRPKHFYSIYKKMKQQNKTFEQIYDLMAVRVIVN---------TVKDCYGTLG 277
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW P+ G F DYI PKP+ YQSLHT V GP G E+QIRT MH AE+G+AAH
Sbjct: 278 VVHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWDMHRTAEYGIAAH 337
Query: 529 WLYKE 533
W YKE
Sbjct: 338 WKYKE 342
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 725 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 784
S E + K+ LR +L W+ +L+ ++ K + D V V P G++
Sbjct: 345 SYEDEFDAKLSWLRQLLEWQRELKDAKEFMETL---KIDLFTDEVY------VFTPKGDV 395
Query: 785 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEV 828
+ L +GST D A + E L VNG++V + ELK+GDIVE+
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPIDYELKNGDIVEI 443
>gi|337279372|ref|YP_004618844.1| GTP pyrophosphokinase [Ramlibacter tataouinensis TTB310]
gi|334730449|gb|AEG92825.1| candidate GTP pyrophosphokinase (GTP pyrophosphokinase)
[Ramlibacter tataouinensis TTB310]
Length = 733
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 395 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 454
+LE EL ++ G+ + R K +YSI KMR K + V+D RALRV+V
Sbjct: 239 SLEAELRVN-----GIPAQVHGRPKHIYSIVKKMRGKSLDFEHVFDVRALRVIV------ 287
Query: 455 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 514
P ++ CY+ L VH + PI EFDDYI PKP+GYQSLHT V+ G +E+Q+RT
Sbjct: 288 ---PEVRDCYAALAWVHERFEPIASEFDDYIARPKPNGYQSLHTVVRDEAGRPIEIQVRT 344
Query: 515 QKMHEYAEHGLAAHWLYKETGNK-LQSISSMDESD 548
Q MHE+AEHG+AAHW YKE G K +S+ E D
Sbjct: 345 QAMHEHAEHGVAAHWAYKEAGAKGYAGVSASSEYD 379
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 14/188 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H IL + S +A +V AC
Sbjct: 34 RARAFAEPFIGQETLDTGENTLAHADAVAGILKGMGGSEAMQAASYLVY---------AC 84
Query: 166 ESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
L +E FGD A L ++L + Q R +A +R ML
Sbjct: 85 PHLARPQEVIAKAFGDSYAALAVETTKLVGV-QRQARAAEDAARAPEDPQLQAEKVRKML 143
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L D RVV+++LA RL +R A R+VA+E L ++ LA+RLG+W LK E+E
Sbjct: 144 LAFSRDLRVVMLRLASRLQTLRWHAAAKTLAPRSVAREALQVFAPLANRLGIWQLKWEME 203
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 204 DLAFRFLE 211
>gi|452202850|ref|YP_007482983.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
gi|452109909|gb|AGG05641.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
Length = 728
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 10/177 (5%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 234
+VAKLV GV++LS + + RR G +A +LR ML+ M +D RVV IK
Sbjct: 90 ADVAKLVDGVTKLSKLALGPAIEDARRPG---GNASLRQAENLRKMLVAMAEDLRVVFIK 146
Query: 235 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMR 291
LADR HNMRT+ AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L R
Sbjct: 147 LADRFHNMRTLQALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPR 203
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 526 AAHWLYKETGNK 537
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
>gi|410663229|ref|YP_006915600.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025586|gb|AFU97870.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
Length = 748
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 10/137 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E ++ R K +YSI+ KMRRK++G +VYD RA+R++V P+++ CY++L I
Sbjct: 259 IEGEITGRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PSVRDCYAVLGI 309
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW I EFDDYI +PK +GY+SLHTAV GP+ LEVQIRT MH+ AE G+ AHW
Sbjct: 310 VHSLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEQKVLEVQIRTHGMHQDAEFGVCAHW 369
Query: 530 LYKETGNKLQSISSMDE 546
YK T +K +S + D+
Sbjct: 370 RYKGT-DKEESQNGYDQ 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRINVNQG 207
++++A IL+ V + SL + + FG+ ++KL+ GV R++ I+ QL ++ G
Sbjct: 85 ESLIAAILYRAVREGKLSLDRVAKAFGNTISKLIEGVLRMAAISATQLDE-----SIALG 139
Query: 208 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 267
E+A ++R ML+ MVDD RV LIKLA+R +R + + + VA+E ++ L
Sbjct: 140 RESEEQAENVRKMLVAMVDDVRVALIKLAERTCAIRALKTATEERRQRVAKEIANVYAPL 199
Query: 268 ASRLGLWALKAELEDLCFAVLQ 289
A RLG+ +K ELEDL F L+
Sbjct: 200 AHRLGIGHIKWELEDLSFRYLE 221
>gi|398788515|ref|ZP_10550667.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces auratus AGR0001]
gi|396992076|gb|EJJ03193.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces auratus AGR0001]
Length = 873
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 23/188 (12%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHDV 160
Q+++A A+R H GQ RK+GDPY+TH + ILA L +D T++AG+LHD
Sbjct: 156 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAEL-------GMDPATLMAGLLHDT 208
Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
V+D L ++ +FGD+VA LV GV++L R+ + +A +R M
Sbjct: 209 VEDTEYGLDTLRGDFGDQVALLVDGVTKLD----------RVKFGEAA----QAETVRKM 254
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
++ M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K EL
Sbjct: 255 VVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWEL 314
Query: 281 EDLCFAVL 288
EDL FA+L
Sbjct: 315 EDLSFAIL 322
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 361 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 411
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 412 IHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 471
Query: 530 LYKE 533
YK+
Sbjct: 472 KYKQ 475
>gi|116629512|ref|YP_814684.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus gasseri ATCC 33323]
gi|282852110|ref|ZP_06261468.1| GTP diphosphokinase [Lactobacillus gasseri 224-1]
gi|311110845|ref|ZP_07712242.1| GTP diphosphokinase [Lactobacillus gasseri MV-22]
gi|420147336|ref|ZP_14654612.1| GTP diphosphokinase [Lactobacillus gasseri CECT 5714]
gi|116095094|gb|ABJ60246.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus gasseri ATCC 33323]
gi|282556870|gb|EFB62474.1| GTP diphosphokinase [Lactobacillus gasseri 224-1]
gi|311065999|gb|EFQ46339.1| GTP diphosphokinase [Lactobacillus gasseri MV-22]
gi|398401337|gb|EJN54839.1| GTP diphosphokinase [Lactobacillus gasseri CECT 5714]
Length = 750
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 109/196 (55%), Gaps = 22/196 (11%)
Query: 99 FNDEQ---VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
NDE V+ A FAK AH GQFR +G PY+ H LA L + DTV AG
Sbjct: 20 MNDEHLAFVESAYEFAKNAHEGQFRVSGQPYIIHPTQVAGTLATL-----RLDPDTVAAG 74
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-- 213
LHD V+D + I+E+FG +VA +V GV++LS + + HEE
Sbjct: 75 YLHDTVEDTPVTNDDIKEKFGKDVAFIVDGVTKLS------------KIQYKSKSHEEYL 122
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A++ R ML+ M D RV+++KLADRLHNM T+ L P K R +A ETL I+ LA RLG+
Sbjct: 123 ADNHRKMLIAMAKDLRVIMVKLADRLHNMHTLDHLRPDKQRRIADETLDIYAPLADRLGI 182
Query: 274 WALKAELEDLCFAVLQ 289
+K ELED+ L
Sbjct: 183 GTIKWELEDMSLHYLN 198
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R K +YSI+ KM K ++YD A+RV+V +++ CY++L
Sbjct: 235 GIEYEIYGRPKHIYSIYKKMVNKHKDFSEIYDLLAVRVIV---------KSVRDCYAVLG 285
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT+ MH+ AE+G+AAH
Sbjct: 286 AVHTKWKPMPGRFKDYIAVPKVNGYQSLHTTIIGPGGKPLEIQIRTEAMHQVAEYGVAAH 345
Query: 529 WLYKE 533
W YKE
Sbjct: 346 WAYKE 350
>gi|453053369|gb|EMF00835.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 844
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 110/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 127 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 181
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L + +FGD+VA LV GV++L R+ + +A +R M++
Sbjct: 182 DTEYGLDDLRRDFGDQVALLVDGVTKLD----------RVQFGEAA----QAETVRKMVV 227
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 228 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 287
Query: 283 LCFAVL 288
L FA+L
Sbjct: 288 LAFAIL 293
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 12/150 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 332 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 382
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 383 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 442
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDT 559
YK+ + + +S +D+ ++ ++DT
Sbjct: 443 KYKQ---EAVAGASKIRTDVPKNAGKNQDT 469
>gi|149194045|ref|ZP_01871143.1| GUANOSINE-PYROPHOSPHOHYDROLASE [Caminibacter mediatlanticus TB-2]
gi|149135998|gb|EDM24476.1| GUANOSINE-PYROPHOSPHOHYDROLASE [Caminibacter mediatlanticus TB-2]
Length = 706
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N ++QKAI FA +AH+GQ RK+G+ Y+ H + L I S + + A ILHD
Sbjct: 30 NTPKIQKAIDFAIKAHNGQKRKSGEDYVVHPL-----LVATITSFFNDNENVITAAILHD 84
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
VV+D S+ I++EF +EVA LV G++++ I R + + N + A R
Sbjct: 85 VVEDTEYSIEYIQKEFQEEVANLVEGLTKIVSI----RDNSLVPSNSNEKLAKSALTFRK 140
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
MLL + D RV++IKL DRLHNM T+ ALPP K + +A+ETL+++ +A RLG+ LK
Sbjct: 141 MLLSSIKDIRVLVIKLCDRLHNMLTLEALPPHKQKRIAEETLVVYTPIAHRLGIATLKNI 200
Query: 280 LEDLCFAVL 288
LEDL F L
Sbjct: 201 LEDLAFKYL 209
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 13/148 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ SR+K YSIF KM+RK + I +V D A+RV+V + P CY L IVH
Sbjct: 255 IKSRIKHYYSIFLKMQRKGISIEEVLDLLAVRVIVKN-------PI--DCYKTLGIVHLN 305
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK- 532
+ P+ F DYI PK +GYQ++HT V + S +EVQIRT M + AE G+AAHW YK
Sbjct: 306 FRPLISRFKDYIAIPKENGYQTIHTTVYNKN-SIIEVQIRTFDMDKNAEFGIAAHWKYKL 364
Query: 533 -ETGNKLQSISSMD-ESDIEASSSLSKD 558
L+ I M + DIE L+K+
Sbjct: 365 NSASPNLKWIEDMKFDEDIEDFYELAKN 392
>gi|332637871|ref|ZP_08416734.1| GTP pyrophosphokinase [Weissella cibaria KACC 11862]
Length = 744
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 114/203 (56%), Gaps = 22/203 (10%)
Query: 93 VTGYPIFNDEQVQK---AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAV 149
V GY N+E V+K A FA H Q RK+G+PY+ H I ILA L
Sbjct: 16 VAGY--MNEEHVKKVDKAYDFACNLHQEQKRKSGEPYIIHPIQVAGILADLHMDP----- 68
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
DTVVAG LHDVV+D +L +E EFG +VA +V GVS+LS I R +
Sbjct: 69 DTVVAGYLHDVVEDTDATLEDVEREFGHDVAVIVDGVSKLSKIEYKSSREQL-------- 120
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
A + R +LL M D RV+++KLADRLHNMRT+ AL K + +A ETL I+ LA
Sbjct: 121 ----AENHRKLLLAMSHDIRVIIVKLADRLHNMRTLSALREEKQKRIASETLEIYAPLAD 176
Query: 270 RLGLWALKAELEDLCFAVLQMRA 292
RLG+ +K ELED+ L+ A
Sbjct: 177 RLGIMTIKWELEDMSLRYLEPEA 199
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 111/214 (51%), Gaps = 28/214 (13%)
Query: 364 HDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYS 423
HD+AKS + +++ ++ I ++ E A+ EL + + + G R K +YS
Sbjct: 201 HDIAKSMQLRRQERL----EIVDQAVDDIEHAI-TELHLKHAEVYG-------RPKHIYS 248
Query: 424 IFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDD 483
I+ KM K ++YD A+RV+V I Y++L +H W P+ G F D
Sbjct: 249 IYRKMVDKKKKFDEIYDLLAIRVLVD---------TIPETYAVLGAIHARWTPMPGRFKD 299
Query: 484 YIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 543
YI PK +GYQSLHT+V GP G LEVQIRT +MHE AE G+AAHW YKE + +
Sbjct: 300 YIALPKANGYQSLHTSVIGPGGRPLEVQIRTYQMHEVAEFGVAAHWAYKEGNFAGADVQN 359
Query: 544 MDESDIEASSSL------SKDTDDH-NPLDTDLF 570
D+ + + ++D DD + DLF
Sbjct: 360 ADQQKLNVIQGILELQEDARDADDFMESVKGDLF 393
>gi|302877631|ref|YP_003846195.1| (p)ppGpp synthetase I SpoT/RelA [Gallionella capsiferriformans
ES-2]
gi|302580420|gb|ADL54431.1| (p)ppGpp synthetase I, SpoT/RelA [Gallionella capsiferriformans
ES-2]
Length = 702
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 121/205 (59%), Gaps = 20/205 (9%)
Query: 86 FIVDGVDVTGYPIFND-EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSS 144
F++D +V+GY D E ++ AI F++ AH GQ R++GDPY+TH I RIL L +
Sbjct: 6 FLID--EVSGYLKPEDVEHIRAAIEFSRIAHQGQTRQSGDPYVTHPIAVARILTPLHLDA 63
Query: 145 GKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 204
+++A +LHDVV+D + I E+FG VA+LV G+S+L I+ R
Sbjct: 64 -----QSIIAALLHDVVEDTEITTEQIAEQFGKPVAELVGGLSKLEKIHFETRED----- 113
Query: 205 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 264
+A + R MLL M D RV+LIKLADRLHNMRT+ ++ K +A+ET+ I+
Sbjct: 114 -------AQAENFRKMLLAMARDVRVILIKLADRLHNMRTLDSMRQDKCERIARETMEIY 166
Query: 265 CSLASRLGLWALKAELEDLCFAVLQ 289
+A+RLGL + EL+DL F L
Sbjct: 167 APIANRLGLNEIYLELQDLSFKHLH 191
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R K++YSI+ KM+ K + +V D RV+V D N CY L
Sbjct: 229 VQAEVTGREKNIYSIYKKMQLKSLAFSEVLDIYGFRVLVEDTN---------ACYLALGA 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ PI G+ DYI PK +GYQSLH+ + GP G+ +EVQIRT++MH+ A+ G+A+HW
Sbjct: 280 LHALYKPIPGKIKDYIAIPKSNGYQSLHSTLFGPFGTPIEVQIRTREMHKIADAGVASHW 339
Query: 530 LYK 532
LYK
Sbjct: 340 LYK 342
>gi|104780553|ref|YP_607051.1| GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
gi|95109540|emb|CAK14241.1| putative GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L I + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEIGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|147668657|ref|YP_001213475.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. BAV1]
gi|146269605|gb|ABQ16597.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. BAV1]
Length = 728
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 10/177 (5%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 234
+VAKLV GV++LS + + RR G +A +LR ML+ M +D RVV IK
Sbjct: 90 ADVAKLVDGVTKLSKLALGPAIEDARRPG---GNASLRQAENLRKMLVAMAEDLRVVFIK 146
Query: 235 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMR 291
LADR HNMRT+ AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L R
Sbjct: 147 LADRFHNMRTLQALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPR 203
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 526 AAHWLYKETGNK 537
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
>gi|441162933|ref|ZP_20968190.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440616458|gb|ELQ79597.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 838
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 121 QVERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 175
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 176 DTEYGLDTLRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 221
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 222 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 281
Query: 283 LCFAVL 288
L FA+L
Sbjct: 282 LAFAIL 287
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 326 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 376
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 377 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 436
Query: 530 LYKE 533
YK+
Sbjct: 437 KYKQ 440
>gi|28211806|ref|NP_782750.1| GTP pyrophosphokinase [Clostridium tetani E88]
gi|28204248|gb|AAO36687.1| putative GTP pyrophosphokinase [Clostridium tetani E88]
Length = 731
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 17/184 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V+KA A AH Q R++G+PY+ H + ILA + G A DT+VAG+LHDV+
Sbjct: 19 ELVKKAYEIANGAHKQQKRESGEPYIVHPVEVACILADM----GMDA-DTIVAGLLHDVI 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E EF +VA LV GV++L I + ++A+++R ML
Sbjct: 74 EDTEYTYEDVEREFNKQVADLVEGVTKLGKIKYKSKEE------------QQADNVRKML 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ +P K + A+ET I+ LA RLG+ +K ELE
Sbjct: 122 LAMAQDVRVILIKLADRLHNMRTLKYMPVEKQKEKAKETFDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCF 285
DL F
Sbjct: 182 DLAF 185
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ + +++D A+R++V ++ CY+ L
Sbjct: 226 GIKSDIEGRPKHFYSIYRKMINKNKTLDQIFDLTAIRILVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH ++ PI G F DYI PKP+ YQSLH+ V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 277 IVHTMYKPIPGRFKDYIAMPKPNMYQSLHSTVIGPQGKPFEIQIRTFEMHKTAEYGIAAH 336
Query: 529 WLYKE 533
W YKE
Sbjct: 337 WKYKE 341
>gi|73747961|ref|YP_307200.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|289431960|ref|YP_003461833.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. GT]
gi|452204331|ref|YP_007484460.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
gi|73659677|emb|CAI82284.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|288945680|gb|ADC73377.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. GT]
gi|452111387|gb|AGG07118.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
Length = 728
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 10/177 (5%)
Query: 117 GQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176
GQ RK+G+P++ H ++ LA L + T+ A +LHDV +DA SL I+++FG
Sbjct: 35 GQMRKSGEPFIEHPLNVAMTLADLQLDAA-----TLSAALLHDVPEDANISLEQIDKKFG 89
Query: 177 DEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 234
+VAKLV GV++LS + + RR G +A +LR ML+ M +D RVV IK
Sbjct: 90 ADVAKLVDGVTKLSKLALGPAIEDARRPG---GNASLRQAENLRKMLVAMAEDLRVVFIK 146
Query: 235 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMR 291
LADR HNMRT+ AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L R
Sbjct: 147 LADRFHNMRTLQALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPR 203
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 526 AAHWLYKETGNK 537
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
>gi|302059737|ref|ZP_07251278.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato K40]
Length = 661
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 169 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 219
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 220 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 279
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 280 WRYK--GTDVKSSSNHYEEKI 298
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE- 212
A +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 1 AAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQA 55
Query: 213 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 272
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG
Sbjct: 56 QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLG 115
Query: 273 LWALKAELEDLCFAVLQ 289
+ +K ELEDL F L+
Sbjct: 116 IGHIKWELEDLSFRYLE 132
>gi|120600557|ref|YP_965131.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Shewanella sp.
W3-18-1]
gi|146294715|ref|YP_001185139.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Shewanella
putrefaciens CN-32]
gi|386315325|ref|YP_006011490.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella putrefaciens 200]
gi|120560650|gb|ABM26577.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. W3-18-1]
gi|145566405|gb|ABP77340.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens CN-32]
gi|319427950|gb|ADV56024.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens 200]
Length = 701
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 20/203 (9%)
Query: 86 FIVDGVDVTGYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP 142
++ +G+ + EQV+ +A A+ AH GQ R +G+PY+TH + RILA +
Sbjct: 2 YLFEGLKESASGYLEPEQVELLKQAYQIARDAHEGQMRTSGEPYITHPVAVARILAEM-- 59
Query: 143 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 202
+ +T++A +LHD ++D + + E FG+ VA+LV GVS+L ++L R ++
Sbjct: 60 ---RLDHETLMAALLHDTIEDTHVTKEDLAERFGESVAELVEGVSKL---DKLKFRDKK- 112
Query: 203 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 262
+A + R M++ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL
Sbjct: 113 --------EAQAENFRKMMMAMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLE 164
Query: 263 IWCSLASRLGLWALKAELEDLCF 285
I+ +A+RLG+ +K ELEDL F
Sbjct: 165 IYAPIANRLGIHNIKTELEDLGF 187
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 12/126 (9%)
Query: 407 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466
IPG + R K+LYSI++KM+ K++ +V D A RV+V +I CY +
Sbjct: 229 IPG---KVKGREKNLYSIYNKMQSKELQFQEVMDIYAFRVIVD---------SIDTCYRV 276
Query: 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 526
L +H L+ P G F DYI PK +GYQSLHT++ GP G +E+QIRT+ M + A+ G+A
Sbjct: 277 LGAMHGLYKPRPGRFKDYIAIPKANGYQSLHTSLFGPHGVPVEIQIRTEDMDQMADKGVA 336
Query: 527 AHWLYK 532
AHW YK
Sbjct: 337 AHWAYK 342
>gi|428174361|gb|EKX43257.1| hypothetical protein GUITHDRAFT_73270 [Guillardia theta CCMP2712]
Length = 370
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 23/223 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+ KA FA+R H GQ R++G+PY H + I+A + S ++V G+LHD V+D
Sbjct: 2 ISKAFYFAQRMHEGQLRRSGEPYFIHPVGVASIIADMKLDSA-----SIVTGLLHDTVED 56
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-ANDLRVMLL 222
SL I++EFG EVA+LV GV+++ I Q T E+ A + R M++
Sbjct: 57 TSASLELIQQEFGSEVAQLVDGVTKIGKI-------------QFTSKEEQQAENFRKMIV 103
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADR HN+RT+ +P K + VA+ETL ++ LA RLG++ +K ELED
Sbjct: 104 AMARDIRVILVKLADRTHNVRTLKFVPAQKQKEVARETLDLYAPLAHRLGIFWMKTELED 163
Query: 283 LCFAVL--QMRADLASMWSPRN--RVGYSRRITTIVSSPPLDE 321
L ++ +L M + + R Y+ + I+ +D+
Sbjct: 164 TSLRYLEPEVYEELKMMVAAKKEERQAYTNEVMEILEKSLVDQ 206
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 412 VTLSSRLKSLYSIFSKMR-RKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 470
V ++ R K YSI+ KMR R+ + +V D A R++ D + CY L IV
Sbjct: 211 VVVTGRAKHFYSIYQKMRSRRLKHVSEVQDLIAFRILTDD---------LSQCYQALGIV 261
Query: 471 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 530
H +W P+ G F DYI PKP+ Y+SLHT V GP G +EVQIRT +MH AE G+AAHW+
Sbjct: 262 HSMWKPVPGRFKDYIALPKPNMYRSLHTTVIGPGGQRIEVQIRTSEMHRVAEEGIAAHWM 321
Query: 531 YK 532
YK
Sbjct: 322 YK 323
>gi|336395470|ref|ZP_08576869.1| GTP pyrophosphokinase [Lactobacillus farciminis KCTC 3681]
Length = 743
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 111/196 (56%), Gaps = 26/196 (13%)
Query: 95 GYPIFNDEQVQ---KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
GY NDE V+ KA FA H Q R TG+PY+ H +ILA L T
Sbjct: 19 GY--MNDEHVEFVNKAYNFAAYVHKEQKRATGEPYIIHPTQVAQILASLHMDPY-----T 71
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V AG LHDVV+D +LG ++E FGD+VA +V GV+++S + H H
Sbjct: 72 VAAGYLHDVVEDTNVTLGDVKELFGDQVATIVDGVTKIS----KYKYH----------SH 117
Query: 212 EE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+E A + R MLL D RV+++KLADRLHNMRT+ AL P K R +A ETL I+ LA
Sbjct: 118 QELLAENHRKMLLATAKDLRVIMVKLADRLHNMRTLKALRPDKQRRIANETLEIYAPLAD 177
Query: 270 RLGLWALKAELEDLCF 285
RLG+ +K ELEDL
Sbjct: 178 RLGISKIKWELEDLSL 193
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 10/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KMR K ++YD A+R+VV +++ CY++L
Sbjct: 234 GIKYDIYGRPKHIYSIYKKMRDKHKQFSELYDLLAIRIVVD---------SVKDCYAVLG 284
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+H W PI G F DYI PK +GYQSLHT + GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 285 SIHSKWKPIPGRFKDYIAVPKANGYQSLHTTIIGPGGQPLEVQIRTFEMHQVAEYGVAAH 344
Query: 529 WLYKETGN 536
W YKE GN
Sbjct: 345 WAYKE-GN 351
>gi|291612747|ref|YP_003522904.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
gi|291582859|gb|ADE10517.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
Length = 659
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K +YSI +KM+RK++ ++YD RA+R++V I+ CY+ L
Sbjct: 254 GIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVRAVRILVD---------TIEQCYAALS 304
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI EFDDYI PKP+GY+SLHTAV GP +EVQIRTQ+MH +E G+AAH
Sbjct: 305 IVHELWTPIQKEFDDYIARPKPNGYKSLHTAVLGPRDLPVEVQIRTQQMHHDSELGVAAH 364
Query: 529 WLYKETGNKLQSISSMDE 546
W YKE +S S +DE
Sbjct: 365 WRYKENR---KSESGLDE 379
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 10/254 (3%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A FA +HG TG P L H + + IL L +T+ A LH + D +
Sbjct: 41 ACEFAAPLYHGHSEITGTPLLQHALGSASILIGLHMDH-----ETIAATALHAIPDFLDD 95
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 226
+EE FG + +V G+SR+ ++ Q R + ++ LR MLL MV+
Sbjct: 96 WKSVLEERFGHNIPLMVDGISRMEHVRQF-SEIRTAAADDKEAAAQQLEGLRQMLLAMVE 154
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 286
D RVVLIKLA+R +RT+ PP + + +AQET I+ LA+RLG+W +K ELEDL
Sbjct: 155 DIRVVLIKLAERTQTLRTLPGAPPEQQKLIAQETQSIFAPLANRLGVWQIKWELEDLSTR 214
Query: 287 VLQ--MRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLL 344
L+ + +A + R R+ R I I+S + A T +H+ S+ + +
Sbjct: 215 YLEPGLYKKIAKLLDER-RIDRERYIADIISHLQRELAQAGIKAEVTGRPKHIYSIINKM 273
Query: 345 E-AVVPFDILSDRR 357
+ + FD L D R
Sbjct: 274 KRKNLDFDQLYDVR 287
>gi|218441725|ref|YP_002380054.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7424]
gi|218174453|gb|ACK73186.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7424]
Length = 749
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 117/226 (51%), Gaps = 31/226 (13%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H + +L L S + AG LHDVV+D
Sbjct: 45 RAFNFAYELHRGQYRKSGEPYIAHPVAVAGLLRDLGGDS-----TMIAAGFLHDVVEDTE 99
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+L IEE FG EV +LV GV++LS N + R +A + R M L M
Sbjct: 100 VTLEEIEERFGLEVRQLVEGVTKLSKFNFSSKTER------------QAENFRRMFLAMA 147
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K +A ET I+ LA+RLG+ K ELEDLCF
Sbjct: 148 KDIRVIVVKLADRLHNMRTLEHLAPEKQCRIALETREIFAPLANRLGIGRFKWELEDLCF 207
Query: 286 AVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFT 331
L+ A R I T+V+ +D T D S T
Sbjct: 208 KYLEPEA--------------YREIQTLVAEKRVDRETRIDKISET 239
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 10/149 (6%)
Query: 399 ELLISTSYIPGMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 457
E L Y G++V + R K LY I+ KM+R+ H++YD ALR++V K
Sbjct: 238 ETLRERLYQIGVKVLEIQGRPKHLYGIYDKMQRQHKEFHEIYDIAALRILVETK------ 291
Query: 458 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 517
+ CY L IVH ++ PI G F DYI PKP+ YQSLHT V G + LEVQIRT +M
Sbjct: 292 ---EECYRALAIVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVVGLNCRPLEVQIRTLEM 348
Query: 518 HEYAEHGLAAHWLYKETGNKLQSISSMDE 546
H AE+G+AAHW YKETG +I+S DE
Sbjct: 349 HHIAEYGIAAHWKYKETGGSTYNITSEDE 377
>gi|422616769|ref|ZP_16685474.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330897095|gb|EGH28573.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 611
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|289677067|ref|ZP_06497957.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. syringae FF5]
Length = 402
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|260655712|ref|ZP_05861185.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
gi|260629629|gb|EEX47823.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 529 WLYKETGNKLQSISS 543
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 98/182 (53%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A FA AH Q R G+PY+ H + ILA + K V T+ A +LHDV++D
Sbjct: 67 VGEAFVFAAGAHGEQMRMGGEPYIIHPVFAASILADM-----KLDVATLQAALLHDVLED 121
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ + E FG+ V LV GV++L + T +A +LR M L
Sbjct: 122 TECTAEQMRERFGEVVTTLVDGVTKLG------------KLPFKTFEDYQAENLRKMFLV 169
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RVVLIKLADR HNMR++ A+ K A+ETL I+ LA RLG++ +K LEDL
Sbjct: 170 MAKDIRVVLIKLADRAHNMRSLGAMRRDKQIRTAKETLEIYAPLAHRLGIYQMKRTLEDL 229
Query: 284 CF 285
F
Sbjct: 230 AF 231
>gi|424845459|ref|ZP_18270070.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
gi|363986897|gb|EHM13727.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 529 WLYKETGNKLQSISS 543
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 98/182 (53%), Gaps = 17/182 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V +A FA AH Q R G+PY+ H + ILA + K V T+ A +LHDV++D
Sbjct: 67 VGEAFVFAAGAHGEQMRMGGEPYIIHPVFAASILADM-----KLDVATLQAALLHDVLED 121
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ + E FG+ V LV GV++L + T +A +LR M L
Sbjct: 122 TECTAEQMRERFGEVVTTLVDGVTKLG------------KLPFKTFEDYQAENLRKMFLV 169
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RVVLIKLADR HNMR++ A+ K A+ETL I+ LA RLG++ +K LEDL
Sbjct: 170 MAKDIRVVLIKLADRTHNMRSLGAMRRDKQIRTAKETLEIYAPLAHRLGIYQMKRTLEDL 229
Query: 284 CF 285
F
Sbjct: 230 AF 231
>gi|291450322|ref|ZP_06589712.1| ppGpp synthetase [Streptomyces albus J1074]
gi|291353271|gb|EFE80173.1| ppGpp synthetase [Streptomyces albus J1074]
Length = 740
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q++KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 23 QIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 77
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 78 DTEYGLDALRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 123
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 124 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 183
Query: 283 LCFAVL 288
L FA+L
Sbjct: 184 LAFAIL 189
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 228 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 278
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 279 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 338
Query: 530 LYKE 533
YK+
Sbjct: 339 KYKQ 342
>gi|27262490|gb|AAN87526.1| GTP pyrophosphokinase [Heliobacillus mobilis]
Length = 734
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 112/188 (59%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++ +A AH GQ RK+G+PY+ H + ILA L + + T+ AG+LHDVV
Sbjct: 23 EFVRRDFQYADVAHTGQLRKSGEPYIYHPLAVAFILADL-----ELDMATIAAGLLHDVV 77
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D +L +E+EFG EVA LV GV++LS R+ V ++ LR M
Sbjct: 78 EDTPITLEELEKEFGPEVALLVDGVTKLS----------RLEVRSKQ--EQQVESLRKMF 125
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ P K R +A+ET+ ++ LA+RLG+ +K ELE
Sbjct: 126 LAMAKDIRVILIKLADRLHNMRTLRHQKPEKQREIAEETIELFAPLANRLGISRIKWELE 185
Query: 282 DLCFAVLQ 289
DL L+
Sbjct: 186 DLSLRYLE 193
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K YSI+ KM + + ++YD A+RV+V +++ CY L
Sbjct: 230 GVKADISGRPKHFYSIYRKMTNQKKDLSEIYDLIAVRVLVD---------SVKDCYGALG 280
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H +W PI F DYI PK + YQSLHT + GP G EVQIRT +MH AE+G+AAH
Sbjct: 281 IIHTIWKPIPMRFKDYIATPKTNMYQSLHTTLVGPMGEPFEVQIRTFEMHRTAEYGIAAH 340
Query: 529 WLYKETGN 536
W YKE G
Sbjct: 341 WKYKEGGK 348
>gi|146306766|ref|YP_001187231.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina ymp]
gi|421506221|ref|ZP_15953146.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
gi|145574967|gb|ABP84499.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas mendocina ymp]
gi|400343003|gb|EJO91388.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|330504040|ref|YP_004380909.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
gi|328918326|gb|AEB59157.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA I++ V + +L ++ + FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAIIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|408676832|ref|YP_006876659.1| GTP pyrophosphokinase , (p)ppGpp synthetase I, partial
[Streptomyces venezuelae ATCC 10712]
gi|328881161|emb|CCA54400.1| GTP pyrophosphokinase , (p)ppGpp synthetase I, partial
[Streptomyces venezuelae ATCC 10712]
Length = 846
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 129 QVERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 183
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 184 DTEYGLDTLRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 229
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 230 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 289
Query: 283 LCFAVL 288
L FA+L
Sbjct: 290 LAFAIL 295
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 334 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 384
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 385 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 444
Query: 530 LYKE 533
YK+
Sbjct: 445 KYKQ 448
>gi|423094042|ref|ZP_17081838.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
gi|397885448|gb|EJL01931.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
Length = 748
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|374993650|ref|YP_004969149.1| RelA/SpoT family (p)ppGpp synthetase [Desulfosporosinus orientis
DSM 765]
gi|357212016|gb|AET66634.1| (p)ppGpp synthetase, RelA/SpoT family [Desulfosporosinus orientis
DSM 765]
Length = 739
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V KA FA+ AH Q R +G+ Y+ H + +IL L T+ A +LHDVV+D
Sbjct: 22 VDKAYHFAEVAHRNQLRNSGEDYILHPLEVAQILVELEMDEA-----TIAAALLHDVVED 76
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
++ IE+ FG+E+A LV GV++L I + V Q + +LR M L
Sbjct: 77 TEYTIADIEKNFGEEIALLVDGVTKLGRIEY------KSKVEQ------QVENLRKMFLA 124
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ PAK + +AQETL I+ LA+RLG++ +K ELEDL
Sbjct: 125 MAKDIRVILIKLADRLHNMRTLKYHSPAKQKEIAQETLEIFAPLANRLGIFRIKWELEDL 184
Query: 284 CFAVLQ 289
F L+
Sbjct: 185 SFRYLK 190
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
++ R K YSI+ KM ++ + ++YD A+RV+V N CY L I+H +
Sbjct: 232 IAGRPKHFYSIYRKMTTQNKELSEIYDLMAIRVIVDSVND---------CYGALGIIHTM 282
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W PI G F DYI PKP+ YQSLHT + G +G E+QIRT +MH +E+G+AAHW YKE
Sbjct: 283 WKPIPGRFKDYIAMPKPNMYQSLHTTLIGENGEPFEIQIRTCEMHRTSEYGIAAHWKYKE 342
Query: 534 TGNK 537
K
Sbjct: 343 GSGK 346
>gi|329894308|ref|ZP_08270178.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
gi|328923104|gb|EGG30427.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
Length = 739
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 93/137 (67%), Gaps = 11/137 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
++ R K ++SI+ KM+RK +G +V+D RA+R++V P+++ CY+ L ++H L
Sbjct: 260 INGRAKHIFSIWKKMQRKGIGFSQVHDVRAIRILV---------PSVKDCYTTLGVIHGL 310
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W I EFDDYI NPKP+GY+SLHTAV GP+G LEVQ+RT +MH+ AE G+ AHW YK+
Sbjct: 311 WRTIPNEFDDYIANPKPNGYRSLHTAVIGPEGKVLEVQVRTNEMHDEAELGVCAHWRYKQ 370
Query: 534 TGNKLQSISSMDESDIE 550
+ S S+ E IE
Sbjct: 371 SDRA--SSGSVYEEKIE 385
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 8/196 (4%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
Y + E+V +A++ + A H D T + + LI K V + AG
Sbjct: 29 YSASDAERVSEALSCLQSASHRVGVDCNDWAQTSNLVVESLDIALILIELKVDVQALCAG 88
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH-EEA 214
+L+ V + S+ S+ EFG V LV GV +++ + + + LG + A
Sbjct: 89 LLYRAVREQRLSVESVRREFGQSVEALVVGVLKMADVADV-----QSFTAASVLGQPQSA 143
Query: 215 ND-LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
ND LR ML+ MVDD RV LIKLA+R +R + + R +A E ++ LA RLG+
Sbjct: 144 NDNLRQMLVAMVDDVRVALIKLAERTCAIRVVKNDEQRRER-LAAEVSGLYVPLAHRLGI 202
Query: 274 WALKAELEDLCFAVLQ 289
LK ELEDL F Q
Sbjct: 203 GQLKWELEDLAFRYTQ 218
>gi|330447149|ref|ZP_08310799.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491340|dbj|GAA05296.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 700
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +++A A+ AH GQ R TG+PY+ H + RILA + + ++T++A +LHDV+
Sbjct: 21 EALRQAFLVARDAHEGQTRSTGEPYIIHPVAVARILAEM-----RLDIETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + FGD VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEDLASRFGDTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K+ELE
Sbjct: 124 MAMAHDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKSELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R K+LYSI++KM+ K+ H + D A RV+V D + CY +L
Sbjct: 228 GINATVLGREKNLYSIYNKMKNKEQRFHSIMDIYAFRVLVSD---------LDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHNLYKPRPSRMKDYIAIPKANGYQSLHTSLVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKE 533
W YK+
Sbjct: 339 WTYKD 343
>gi|403250801|ref|ZP_10917188.1| guanosine polyphosphate synthetase/pyrophosphohydrolase
[actinobacterium SCGC AAA027-L06]
gi|402915849|gb|EJX36785.1| guanosine polyphosphate synthetase/pyrophosphohydrolase
[actinobacterium SCGC AAA027-L06]
Length = 722
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 20/203 (9%)
Query: 87 IVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGK 146
+VDG+ +P F++ +++A A++AH GQ RK+G+PY+TH + +IL L
Sbjct: 10 LVDGL-TRSHPGFSNSDLERAFIAAEKAHSGQLRKSGEPYITHPVAVAQILIDL-----G 63
Query: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206
+ T++A +LHD V+D S+ I+ EFGDEV LV GV++L +
Sbjct: 64 MDLATIMAALLHDTVEDTSYSIEQIKAEFGDEVTSLVDGVTKLD------------KLTY 111
Query: 207 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266
G + EA LR M++ M D RV++IKLADRLHN RT +P A A+ETL I+
Sbjct: 112 GPIA--EAETLRKMVVAMSRDIRVLVIKLADRLHNARTWEFIPNETASRKARETLDIYAP 169
Query: 267 LASRLGLWALKAELEDLCFAVLQ 289
LA RLG+ A+K ELEDL F +L+
Sbjct: 170 LAHRLGMNAIKWELEDLSFRILE 192
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R K YS++ KM + + +YD +R++V +++ CY L
Sbjct: 230 IKAQVTGRQKHFYSVYQKMVVRGREFNDIYDLVGIRILVD---------SVRDCYGALGA 280
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQSLHT V GP+G A+E+QIRT MH AE G+AAHW
Sbjct: 281 IHARWSPVPGRFKDYIAMPKFNLYQSLHTTVIGPNGKAVEIQIRTFDMHARAEFGIAAHW 340
Query: 530 LYKETG 535
YK G
Sbjct: 341 KYKAKG 346
>gi|357414529|ref|YP_004926265.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces flavogriseus ATCC
33331]
gi|320011898|gb|ADW06748.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces flavogriseus ATCC
33331]
Length = 884
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 165 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 219
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ ++FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 220 DTEYGLDTLRKDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 265
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 266 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 325
Query: 283 LCFAVL 288
L FA+L
Sbjct: 326 LAFAIL 331
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 370 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 420
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 421 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 480
Query: 530 LYKE 533
YK+
Sbjct: 481 KYKQ 484
>gi|167758796|ref|ZP_02430923.1| hypothetical protein CLOSCI_01138 [Clostridium scindens ATCC 35704]
gi|167663536|gb|EDS07666.1| RelA/SpoT family protein [Clostridium scindens ATCC 35704]
Length = 781
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + ++KA AK+AH GQ RK+G+PY+ H + ILA L + +T+V+G
Sbjct: 59 HPSTDVSMIEKAYQLAKKAHGGQCRKSGEPYIVHPLWVAIILADL-----EMDKETIVSG 113
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D I+ EFG+EVA LV GV++L R++ + L +A
Sbjct: 114 MLHDVVEDTEVGEEDIKREFGEEVALLVDGVTKLG----------RLSYSSDKL-EVQAE 162
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV++IKLADRLHNMRT+ + PAK + A+ET+ I+ +A RLG+
Sbjct: 163 NLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMTPAKQKEKAKETMDIYAPIAQRLGISK 222
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL Q
Sbjct: 223 IKTELDDLALKYSQ 236
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 89/140 (63%), Gaps = 9/140 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ ++ R+K +SI+ KM +D + +VYD A+R++V +++ CY+ L +
Sbjct: 274 IKADVNGRVKHFFSIYKKMVNQDKTVDQVYDLFAVRIIV---------DSVKDCYAALGV 324
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PKP+ YQSLHT + G E+QIRTQ+MH+ AE+G+AAHW
Sbjct: 325 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMSSVGQPFEIQIRTQEMHKTAEYGIAAHW 384
Query: 530 LYKETGNKLQSISSMDESDI 549
YKE+ + +S+ + +E +
Sbjct: 385 KYKESNDGKKSVEAQEEEKL 404
>gi|57233675|ref|YP_180760.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
gi|57224123|gb|AAW39180.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
Length = 728
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 110/179 (61%), Gaps = 10/179 (5%)
Query: 115 HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEE 174
H GQ RK+G+P++ H ++ LA L S T+ A +LHDV +DA SL IE++
Sbjct: 33 HTGQMRKSGEPFIEHPLNVAITLADLQLDSA-----TLAAALLHDVPEDAHISLEQIEKK 87
Query: 175 FGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVL 232
FG +VAKLV GV++LS + + RR G +A +LR ML+ M +D RVV
Sbjct: 88 FGADVAKLVDGVTKLSKLALGPGIEDARRPG---GNASLRQAENLRKMLVAMSEDLRVVF 144
Query: 233 IKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMR 291
IKLADR HNMRT+ AL K R++A+ET+ I+ LA RLG+W LK +LEDL F L R
Sbjct: 145 IKLADRFHNMRTLQALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPR 203
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 465
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 466 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 525
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 526 AAHWLYKETGNK 537
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
>gi|163814889|ref|ZP_02206277.1| hypothetical protein COPEUT_01040 [Coprococcus eutactus ATCC 27759]
gi|158449828|gb|EDP26823.1| RelA/SpoT family protein [Coprococcus eutactus ATCC 27759]
Length = 814
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 137/248 (55%), Gaps = 26/248 (10%)
Query: 68 LSTKVDFLWPK-LEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPY 126
LST DF P+ L ++ T I+ T +P + ++KA A AH GQ RK+G+PY
Sbjct: 73 LSTPADFTPPEDLYKELITRIL-----TYHPSADITMIEKAYKVADAAHKGQLRKSGEPY 127
Query: 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186
+ H ++ ILA L + +T+VAGILHDVV+D + I EF +EVA LV GV
Sbjct: 128 IMHPLNVAIILAEL-----ELDKETIVAGILHDVVEDTVMTSEEIASEFSEEVAFLVDGV 182
Query: 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIY 246
++L+ QL +I V +A +LR M L M D RV+LIKLADRLHN+RT+
Sbjct: 183 TKLT---QLKMTTDKIEV--------QAENLRKMFLSMAKDIRVILIKLADRLHNLRTLQ 231
Query: 247 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL--QMRADLASMWSPR--N 302
P K A+ET+ I+ +A RLG+ +K EL+DL L ++ DL + +
Sbjct: 232 YQSPEKQIEKARETMDIYAPIAHRLGISKIKVELDDLSMMYLMPEVYNDLKAQIDEKLTE 291
Query: 303 RVGYSRRI 310
R Y +R+
Sbjct: 292 RDAYIKRV 299
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R+K +SI+ KM+ ++ + ++YD A+R+ V ++ CYS L
Sbjct: 311 GLEAEIDGRVKHFFSIYKKMKNQNKTLDQIYDIFAVRIKVN---------TVRDCYSALG 361
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H ++ PI G F DYI PK + YQSLHT + GP+G E+QIRT +MH AE+G+AAH
Sbjct: 362 IIHEMYKPIPGRFKDYIAMPKSNMYQSLHTTLIGPEGQPFEIQIRTYEMHRTAEYGIAAH 421
Query: 529 WLYKE--TGNKLQSISSMDESDIEASSSL---SKDTDDHNPL------DTDLF 570
W YKE TG +Q +E + + +DTDD+ D DLF
Sbjct: 422 WKYKENITGTVMQK----EEEKLSWLRQILEWQRDTDDNKEFMSFVKTDLDLF 470
>gi|443642861|ref|ZP_21126711.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
gi|443282878|gb|ELS41883.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|440745105|ref|ZP_20924402.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
gi|440373090|gb|ELQ09862.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|429212426|ref|ZP_19203591.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
gi|428156908|gb|EKX03456.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
Length = 752
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 256 GIKADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 306
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 366
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYL--THCIHTGRILAMLIPSSGKRAVDT 151
T P+ + + + +A FA+ A + + + T TG +A ++ + K ++
Sbjct: 27 TLVPVLDRKVLLEACEFAREAENKAVSQVEAAWADGTSSFQTGLEIAEIL-ADLKLDQES 85
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
+VA +++ V + L +++ FG VAKL+ GV R++ I+ L + R ++ GT
Sbjct: 86 LVAAVIYRGVREGKVKLEEVQQRFGPVVAKLIEGVLRMAAISASL--NPRQSMVLGTQAQ 143
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 144 IE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRMRVAREVFDIYAPLAHRL 201
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 202 GIGHIKWELEDLSFRYLE 219
>gi|424068834|ref|ZP_17806283.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073260|ref|ZP_17810678.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996341|gb|EKG36818.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996350|gb|EKG36826.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|422637401|ref|ZP_16700833.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
gi|330949797|gb|EGH50057.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|330833705|ref|YP_004402530.1| GTP pyrophosphokinase [Streptococcus suis ST3]
gi|386585110|ref|YP_006081513.1| GTP pyrophosphokinase [Streptococcus suis D9]
gi|329307928|gb|AEB82344.1| GTP pyrophosphokinase [Streptococcus suis ST3]
gi|353737256|gb|AER18265.1| GTP pyrophosphokinase [Streptococcus suis D9]
Length = 733
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 113/204 (55%), Gaps = 21/204 (10%)
Query: 88 VDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKR 147
V G+ T P + VQKA+ FA AH QFRK+G+PY+ H I ILA L K
Sbjct: 11 VVGLTATYLPAEDVAFVQKALDFATEAHKLQFRKSGEPYIVHPIQVAGILAGL-----KL 65
Query: 148 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 207
TV G LHDVV+D +L +E EFG EV +V GV++L +
Sbjct: 66 DAVTVACGFLHDVVEDTDVTLDDMEAEFGPEVRHIVGGVTKLGKVE-------------- 111
Query: 208 TLGHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 265
HEE A + R ML+ M D RV+L+KLADRLHNMRT+ L K +++ET+ I+
Sbjct: 112 YKSHEEQLAENHRNMLIAMSQDMRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYA 171
Query: 266 SLASRLGLWALKAELEDLCFAVLQ 289
LA RLG+ ++K ELED+ F L
Sbjct: 172 PLAHRLGISSIKWELEDMSFRYLN 195
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM K ++YD A+R + + P+ Y++L +H L
Sbjct: 237 IYGRPKHIYSIYRKMHDKKKRFDQLYDLIAIRCI-------MDTPS--DVYAMLGYIHEL 287
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT +MH+ AE+G+AAHW YK
Sbjct: 288 WKPMPGRFKDYIANQKANGYQSIHTTVYGPRG-PIEFQIRTMEMHQVAEYGVAAHWAYKR 346
Query: 534 TG 535
G
Sbjct: 347 GG 348
>gi|90581393|ref|ZP_01237188.1| putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Photobacterium angustum S14]
gi|90437370|gb|EAS62566.1| putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Vibrio angustum S14]
Length = 700
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +++A A+ AH GQ R TG+PY+ H + RILA + + ++T++A +LHDV+
Sbjct: 21 EALRQAFLVARDAHEGQTRSTGEPYIIHPVAVARILAEM-----RLDIETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + FGD VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEDLASRFGDTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K+ELE
Sbjct: 124 MAMAHDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKSELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R K+L+SI++KM+ K+ H + D A RV+V D + CY +L
Sbjct: 228 GIHATVLGREKNLFSIYNKMKNKEQRFHSIMDIYAFRVLVSD---------LDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHNLYKPRPSRMKDYIAIPKANGYQSLHTSLVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKE 533
W YK+
Sbjct: 339 WTYKD 343
>gi|336437345|ref|ZP_08617051.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005471|gb|EGN35516.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 767
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A AH+GQ RK+G+PY+ H + G ILA L + +T+VAG+LHD V+D
Sbjct: 54 IEKAYKTANEAHNGQVRKSGEPYIIHPLWVGIILADL-----EMDKETIVAGMLHDAVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L + EFG+EVA LV GV++L QL ++ + +A +LR M L
Sbjct: 109 TDMTLDDVSREFGEEVALLVDGVTKLG---QLSYSQDKLEI--------QAENLRKMFLA 157
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 158 MAKDIRVIIIKLADRLHNMRTLEFMRPEKQKEKAKETMDIYAPIAQRLGISKIKIELDDL 217
Query: 284 CFAVLQ 289
Q
Sbjct: 218 SLKYSQ 223
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 261 IQAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 311
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 371
Query: 530 LYKETGNKLQSISSMDE 546
YKE G+ + + + +E
Sbjct: 372 KYKEGGDAAKVVQAQEE 388
>gi|89076057|ref|ZP_01162417.1| putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Photobacterium sp. SKA34]
gi|89048209|gb|EAR53791.1| putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Photobacterium sp. SKA34]
Length = 700
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 115/187 (61%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E +++A A+ AH GQ R TG+PY+ H + RILA + + ++T++A +LHDV+
Sbjct: 21 EALRQAFLVARDAHEGQTRSTGEPYIIHPVAVARILAEM-----RLDIETLMAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + + FGD VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDTEVTKEDLASRFGDTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMI 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K+ELE
Sbjct: 124 MAMAHDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIFSPLAHRLGIHNIKSELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ T+ R K+L SI++KM+ K+ H + D A RV+V D + CY +L
Sbjct: 228 GIHATVLGREKNLLSIYNKMKNKEQRFHSIMDIYAFRVLVSD---------LDTCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHNLYKPRPSRMKDYIAIPKANGYQSLHTSLVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKE 533
W YK+
Sbjct: 339 WTYKD 343
>gi|440722555|ref|ZP_20902933.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
gi|440729399|ref|ZP_20909579.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440358722|gb|ELP96062.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440361143|gb|ELP98385.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|71733843|ref|YP_275858.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554396|gb|AAZ33607.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 744
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSGSNHYEEKI 381
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 28 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 82
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 83 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 137
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 138 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 197
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 198 GIGHIKWELEDLSFRYLE 215
>gi|331090638|ref|ZP_08339489.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401078|gb|EGG80673.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 766
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA AK AH GQ RK+G+ Y+ H G ILA L +T+ AGILHDVV+D
Sbjct: 54 IEKAYRIAKEAHEGQVRKSGEAYIIHPTWVGLILADLELDK-----ETIAAGILHDVVED 108
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I EEFG EVA LV GV++L QL ++ V +A +LR M L
Sbjct: 109 TVMTEEEITEEFGSEVALLVDGVTKLG---QLSYSADKLEV--------QAENLRKMFLA 157
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 158 MAKDIRVILIKLADRLHNMRTLQFMRPEKQKEKARETMDIYAPIAQRLGISKIKTELDDL 217
Query: 284 CFAVLQ 289
Q
Sbjct: 218 ALKYSQ 223
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 17/162 (10%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L +H ++ P
Sbjct: 268 RVKHFFSIYKKMVNQDKTVDQIYDLFAIRIIV---------DSVKDCYAALGAIHEMYTP 318
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PKP+ YQSLHT + GP G E+QIRT +MH+ AE+G+AAHW YKE+G
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTLMGPAGQPFEIQIRTVEMHKTAEYGIAAHWKYKESGG 378
Query: 537 KLQSISSMDESDIEASSSL---SKDTDDHNPL-----DTDLF 570
+S+++ E + + +DTD+ L D DLF
Sbjct: 379 SEKSVATRAEEKLSWLRQILEWQQDTDNREFLSLLKGDLDLF 420
>gi|170720403|ref|YP_001748091.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida W619]
gi|169758406|gb|ACA71722.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida W619]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|444919613|ref|ZP_21239613.1| GTP pyrophosphokinase [Cystobacter fuscus DSM 2262]
gi|444708165|gb|ELW49258.1| GTP pyrophosphokinase [Cystobacter fuscus DSM 2262]
Length = 740
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 18/194 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA ++ + H GQ RK+G+PYL H + +LA L K ++V G+LHD ++D
Sbjct: 23 IKKAYVYSAKVHQGQLRKSGEPYLIHPLEVAGLLAEL-----KLDEASIVTGLLHDTIED 77
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+ + E FG EVA+LV GV++LS + TL EE A + R M+
Sbjct: 78 TLATAEELTELFGPEVAQLVDGVTKLSKFSA-----------SATLSQEEKQAENFRKMI 126
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+L+KLADR HNMRT+ + K R +AQETL I+ LA+RLG+ +K ELE
Sbjct: 127 IAMAQDIRVILVKLADRTHNMRTLDHMSEEKQRRIAQETLDIYAPLANRLGISWVKTELE 186
Query: 282 DLCFAVLQMRADLA 295
DL F L+ + LA
Sbjct: 187 DLSFRYLKPQEYLA 200
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 88/147 (59%), Gaps = 12/147 (8%)
Query: 401 LISTSYIP-GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 459
LI+T G++ +S R K +YSI+ KM+ + + +++D A R++ +
Sbjct: 222 LITTKLTERGLKGEVSGRFKHVYSIYKKMKSQGIEFEQIHDVIAFRIITN---------S 272
Query: 460 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 519
+ CY L +VH+LW P+ G F D+I PKP+ YQSLHT V GP G +EVQIRT MH+
Sbjct: 273 MPACYEALGLVHQLWKPVPGRFKDFIAIPKPNMYQSLHTTVVGPLGERIEVQIRTPDMHK 332
Query: 520 YAEHGLAAHWLYKETGNKLQSISSMDE 546
AE G+AAHW YKE K S+S DE
Sbjct: 333 VAEEGIAAHWAYKE--GKALSVSKDDE 357
>gi|422297689|ref|ZP_16385319.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
gi|407990823|gb|EKG32828.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
Length = 711
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 219 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 269
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 270 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 329
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 330 WRYK--GTDVKSGSNHYEEKI 348
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 104 VQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILH 158
+++A FA++A H G + ILA L K D++VA +++
Sbjct: 1 MKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSLVAAVMY 55
Query: 159 DVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDL 217
V + L +E+ FG VAKL+ GV R++ I+ L + + LG + + +L
Sbjct: 56 RGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQAQVENL 110
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+ +K
Sbjct: 111 RKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIK 170
Query: 278 AELEDLCFAVLQ 289
ELEDL F L+
Sbjct: 171 WELEDLSFRYLE 182
>gi|313897335|ref|ZP_07830878.1| GTP diphosphokinase [Clostridium sp. HGF2]
gi|312957705|gb|EFR39330.1| GTP diphosphokinase [Clostridium sp. HGF2]
Length = 733
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 27/195 (13%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML + T+ AG LHD
Sbjct: 25 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML-----RTGPKTIAAGFLHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 214
VV+D ++ + + FG+EVA LV V+++ G L ++ A
Sbjct: 80 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 122
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++ R + + M D RV+LIKLADRLHNMRT+ + P K + +A ETL ++ +A RLG+
Sbjct: 123 SNHRKIFIAMAKDVRVILIKLADRLHNMRTLQYMRPEKQKKIASETLEVYAPIAHRLGIS 182
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDLCF L
Sbjct: 183 DIKNELEDLCFQYLN 197
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R++ CY L +H + P
Sbjct: 242 RSKHLYSIYKKMMTKNKRFEEILDLLAIRIITDTDTA---------CYETLGYIHAKYRP 292
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW YKE N
Sbjct: 293 IPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWRYKENIN 352
>gi|289628370|ref|ZP_06461324.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289648124|ref|ZP_06479467.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581197|ref|ZP_16656340.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330866047|gb|EGH00756.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|350561728|ref|ZP_08930566.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780760|gb|EGZ35078.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 724
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GVQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVIGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 529 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 566
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 170 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 229
+ ++FG+ VA+L VS L RR G E+A LR MLL MVDD R
Sbjct: 88 QMSQQFGEVVARLTENVSELV--------RRRFESPTGR--PEQAERLRRMLLAMVDDVR 137
Query: 230 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289
+LIK A RL N+R A+ +AQETL + LA+RLG+ +LK E+EDL +L+
Sbjct: 138 ALLIKFAFRLQNLRLAVKQMEPNAKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILE 197
>gi|118471771|ref|YP_887284.1| GTP pyrophosphokinase [Mycobacterium smegmatis str. MC2 155]
gi|399987301|ref|YP_006567650.1| GTP pyrophosphokinase RelA [Mycobacterium smegmatis str. MC2 155]
gi|441208103|ref|ZP_20973829.1| GTP pyrophosphokinase [Mycobacterium smegmatis MKD8]
gi|118173058|gb|ABK73954.1| GTP pyrophosphokinase [Mycobacterium smegmatis str. MC2 155]
gi|399231862|gb|AFP39355.1| GTP pyrophosphokinase RelA [Mycobacterium smegmatis str. MC2 155]
gi|440627577|gb|ELQ89385.1| GTP pyrophosphokinase [Mycobacterium smegmatis MKD8]
Length = 797
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 112/195 (57%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + + +Q+A A++ H Q RK+GDPY+TH + ILA L + T+VA
Sbjct: 82 YPKADLQLLQRAYEVAEKRHADQLRKSGDPYITHPLAVANILAELGMDT-----TTLVAA 136
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D SL ++ +FG EV LV GV++L + LG E
Sbjct: 137 LLHDTVEDTGYSLEALTADFGSEVGHLVDGVTKLDKV---------------VLGSAAEG 181
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 182 ETIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 241
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 242 TVKWELEDLAFAILH 256
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ + R K +SI+ KM K ++D +R++ + I+ CY+ + +
Sbjct: 294 INAVVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------IRDCYAAVGV 344
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT++MH AE+G+AAHW
Sbjct: 345 VHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTREMHRTAEYGIAAHW 404
Query: 530 LYKETGNK 537
YKE +
Sbjct: 405 RYKEAKGR 412
>gi|94985409|ref|YP_604773.1| (p)ppGpp synthetase I SpoT/RelA [Deinococcus geothermalis DSM
11300]
gi|94555690|gb|ABF45604.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus geothermalis DSM
11300]
Length = 766
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 118/188 (62%), Gaps = 9/188 (4%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
++++A FA+ AH G RK+G+PY+TH + ILA L D+++AG+LHD V+
Sbjct: 30 RIERAYVFARDAHAGVNRKSGEPYITHPVAVATILARL-----GMDTDSIMAGLLHDTVE 84
Query: 163 DA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
D + IE EFG +V ++V G +++S +++ + + L +A +LR ML
Sbjct: 85 DVDGVTFEVIEREFGPDVRRIVEGETKVSKLSKQGSQQAEVRDTGRDL---QAENLRQML 141
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M DD R++++KLADRLHNMRT+ A+ P K + +A+ET+ I+ LA RLG+ +K ELE
Sbjct: 142 IAMTDDLRIIVVKLADRLHNMRTLGAMKPEKQQRIARETMDIFAPLAHRLGIGQIKWELE 201
Query: 282 DLCFAVLQ 289
DL F LQ
Sbjct: 202 DLAFQYLQ 209
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 23/185 (12%)
Query: 362 FLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSL 421
+L ++ + ++ A + Q A+T L EALE +L + ++ ++ R K L
Sbjct: 215 YLQSRLRTRQEERDALIQQ----AVTQL---REALEDDLELPEWV---SDIDIAGRSKHL 264
Query: 422 YSIFSKMRRKDVGIHKVYDARALRVVVGDKN-----GT--------LHGPAIQCCYSLLD 468
+SI +KM+R++ + +++D A+RV++ + GT + CY +
Sbjct: 265 WSIHNKMQRENKTLEQIFDLLAIRVILTPRPLSVPPGTDEKRRERAEETREKRICYHTVS 324
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH +W P+ G F DYI PKP+GYQSLHT V G +EVQIR+++MHE AE+G+AAH
Sbjct: 325 IVHSIWTPLPGRFKDYIAVPKPNGYQSLHTTVISQSGQPIEVQIRSRRMHEVAEYGVAAH 384
Query: 529 WLYKE 533
W+YK+
Sbjct: 385 WMYKQ 389
>gi|429332116|ref|ZP_19212848.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
gi|428763166|gb|EKX85349.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA I++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAIIYRAVREGKATLAEVAQRFGPVVSKLIDGVLRMAAISASLNPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRHRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|237798966|ref|ZP_04587427.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806202|ref|ZP_04592906.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021820|gb|EGI01877.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027315|gb|EGI07370.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 533
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 103/194 (53%), Gaps = 8/194 (4%)
Query: 98 IFNDEQVQKAIAFAKRAHHG-QFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGI 156
+ + E +++A FA++A + K T TG +A ++ + K D++VA +
Sbjct: 31 VLDREVMKQACEFARQAEQNDKVHKNHWAEGTSSFQTGLEIAEIL-ADLKLDQDSLVAAV 89
Query: 157 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EAN 215
++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG + +
Sbjct: 90 IYRGVREGVIPLPEVEQRFGSTVAKLIDGVLRMAAISASLSPRQSL-----VLGSQAQVE 144
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+
Sbjct: 145 NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGH 204
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL F L+
Sbjct: 205 IKWELEDLSFRYLE 218
>gi|66046924|ref|YP_236765.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
gi|63257631|gb|AAY38727.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E ++KA FA+ A H G + ILA L K D++
Sbjct: 31 VLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|409427770|ref|ZP_11262262.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. HYS]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRAVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRNRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|344998531|ref|YP_004801385.1| (p)ppGpp synthetase I SpoT/RelA [Streptomyces sp. SirexAA-E]
gi|344314157|gb|AEN08845.1| (p)ppGpp synthetase I, SpoT/RelA [Streptomyces sp. SirexAA-E]
Length = 902
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 182 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 236
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ ++FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 237 DTEYGLDTLRKDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 282
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 283 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 342
Query: 283 LCFAVL 288
L FA+L
Sbjct: 343 LAFAIL 348
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 387 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 437
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 438 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 497
Query: 530 LYKE 533
YK+
Sbjct: 498 KYKQ 501
>gi|29833382|ref|NP_828016.1| ppGpp synthetase [Streptomyces avermitilis MA-4680]
gi|29610505|dbj|BAC74551.1| putative ppGpp synthetase [Streptomyces avermitilis MA-4680]
Length = 845
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 123 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 177
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 178 DTEYGLDTLRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 223
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 224 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 283
Query: 283 LCFAVL 288
L FA+L
Sbjct: 284 LAFAIL 289
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 328 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 378
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 379 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 438
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHN 563
YK+ + S D A S+ KD D N
Sbjct: 439 KYKQEPSAGASKVRTD-----APKSVGKDKDAVN 467
>gi|398348042|ref|ZP_10532745.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
broomii str. 5399]
Length = 674
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV--AGILHD 159
E V+KA ++ AH GQFR +G+PY+ H + G IL L +D V AGILHD
Sbjct: 27 ELVEKAYKISEDAHQGQFRLSGEPYIVHPLQVGYILYEL-------GLDEKVISAGILHD 79
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D + ++ +FG E+ +LV GV+++S I R E A ++R
Sbjct: 80 VIEDTKYTRENMVSDFGTEITQLVEGVTKISEIKSQSRET------------EAAENIRK 127
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HNMRT+ PP K R +A ETL ++ +A RLG++ +K+E
Sbjct: 128 IIIATIQDIRVILIKLADKTHNMRTLSFQPPEKQRRIANETLSLYAPIAGRLGIYKVKSE 187
Query: 280 LEDLCFAVL 288
LEDL F V+
Sbjct: 188 LEDLAFQVI 196
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 22/141 (15%)
Query: 406 YIPGMEVTLSSRL-------------KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 452
YI +++ L RL K +SI+ KM+ K+ +++D RA+R++ +
Sbjct: 218 YIDKLQIILKQRLAEININAQVDGRAKHFFSIYRKMKTKEKTFDEIFDLRAIRIITDE-- 275
Query: 453 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 512
I+ CY +L IVH LW P+ G F DYI PK + YQSLHT V GPDG LEVQI
Sbjct: 276 -------IKDCYGVLGIVHTLWTPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQI 328
Query: 513 RTQKMHEYAEHGLAAHWLYKE 533
RT +M+ AE G+AAHW+YKE
Sbjct: 329 RTAEMNAIAEFGIAAHWVYKE 349
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 830
V V P GEI++L G+T D A + VGL K +N +++ TEL+ GD VEV V
Sbjct: 393 VFVFTPKGEIIQLPKGATVLDFAFRIHTDVGLHCKGAKINNRMIPLRTELRSGDQVEVVV 452
>gi|422590107|ref|ZP_16664765.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422653534|ref|ZP_16716298.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330877091|gb|EGH11240.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330966581|gb|EGH66841.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|17229041|ref|NP_485589.1| (p)ppGpp 3-pyrophosphohydrolase [Nostoc sp. PCC 7120]
gi|17135369|dbj|BAB77915.1| (p)ppGpp 3-pyrophosphohydrolase [Nostoc sp. PCC 7120]
Length = 751
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA + HHGQ+RK+G+ Y++H I +L L G A+ + AG LHDVV+D
Sbjct: 46 RAFDFAYQLHHGQYRKSGELYISHPIAVAGLLRDL---GGSPAM--IAAGFLHDVVEDTD 100
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
++ IEE FG EV +LV GV++LS IN ++ +A + R M L M
Sbjct: 101 VTIEEIEERFGPEVKQLVEGVTKLSKINFTSKKE------------SQAENFRRMFLAMA 148
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ + R AQET I+ LA+RLG+W +K ELEDL F
Sbjct: 149 QDIRVIVVKLADRLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRLGIWRIKWELEDLAF 208
Query: 286 AVLQMRA 292
L+ A
Sbjct: 209 KNLEPEA 215
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K LYSI+ KM R+ +++YD ALR++V + CY L +VH
Sbjct: 255 ISGRPKHLYSIYQKMHRQQKEFNEIYDLAALRIIVETN---------EECYRALAVVHDA 305
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHRIAEYGIAAHWKYKE 365
Query: 534 TGNKLQSISSMDE 546
TG I++ DE
Sbjct: 366 TGGSNSLITTSDE 378
>gi|88856261|ref|ZP_01130921.1| GTP pyrophosphokinase [marine actinobacterium PHSC20C1]
gi|88814580|gb|EAR24442.1| GTP pyrophosphokinase [marine actinobacterium PHSC20C1]
Length = 748
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 115/196 (58%), Gaps = 19/196 (9%)
Query: 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVV 153
T +P N +++A A A RAH GQ RK+G+PY+TH + +ILA L G++ T+
Sbjct: 37 THHPKANLALIERAYAAAFRAHDGQKRKSGEPYITHPVAVSQILADL--GIGEK---TIA 91
Query: 154 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 213
A +LHD V+D SL + EFGDE+A LV GV++L V G +
Sbjct: 92 AALLHDTVEDTEYSLDELRVEFGDEIAMLVDGVTKLD------------KVKYGDSA--Q 137
Query: 214 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 273
A +R M++ M D RV++IKLADRLHN RT +P A AQETL I+ LA RLG+
Sbjct: 138 AETVRKMIVAMSKDIRVLVIKLADRLHNARTWGFVPRESALRKAQETLEIYAPLAHRLGI 197
Query: 274 WALKAELEDLCFAVLQ 289
A+K ELEDL FAVL
Sbjct: 198 QAIKIELEDLSFAVLH 213
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 79/132 (59%), Gaps = 12/132 (9%)
Query: 402 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 461
+ TS I G +++ R K YSI+ KM + ++YD +RV+V +++
Sbjct: 246 LKTSRIKG---SVAGRPKQYYSIYQKMIVRGREFDEIYDLVGIRVLVN---------SVR 293
Query: 462 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 521
CY++L +H W PI G F DYI PK + YQSLHT V GP G A+E+QIRT +MH A
Sbjct: 294 DCYAVLGSIHARWNPIPGRFKDYIATPKFNLYQSLHTTVIGPQGRAVEIQIRTSEMHHRA 353
Query: 522 EHGLAAHWLYKE 533
E G+AAHW YK+
Sbjct: 354 EFGVAAHWKYKD 365
>gi|410938453|ref|ZP_11370300.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
gi|410786378|gb|EKR75322.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
Length = 680
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 112/189 (59%), Gaps = 21/189 (11%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD--TVVAGILHD 159
E VQKA ++ AH GQFR +G+PY+ H + G IL L +D + AG+LHD
Sbjct: 33 ESVQKAYDVSEHAHQGQFRLSGEPYIVHPLQVGFILYEL-------GLDEKVICAGLLHD 85
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 219
V++D S + +FG+++ LV GV+++S I + E A ++R
Sbjct: 86 VIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------EAAENIRK 133
Query: 220 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 279
+++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RLG++ +K+E
Sbjct: 134 IIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRLGIYKIKSE 193
Query: 280 LEDLCFAVL 288
LEDL F +L
Sbjct: 194 LEDLAFQIL 202
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 241 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 291
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 292 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 351
Query: 530 LYKE 533
+YKE
Sbjct: 352 MYKE 355
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 775 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 828
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 399 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 456
>gi|388543450|ref|ZP_10146741.1| RelA protein [Pseudomonas sp. M47T1]
gi|388278762|gb|EIK98333.1| RelA protein [Pseudomonas sp. M47T1]
Length = 748
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 549
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 6/192 (3%)
Query: 99 FNDEQVQKAIAFAKRA-HHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGIL 157
+ E ++ A FA +A G K T C G +A ++ + K DT+VA ++
Sbjct: 32 LDREALKTACEFALQAEQQGNKAKHSWADGTSCFQAGLEIAEIL-ADLKLDQDTLVAAVI 90
Query: 158 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 217
+ V + +L + + FG VAKL+ GV R++ I+ L R ++ G+ G E +L
Sbjct: 91 YRAVREGRVTLADVGQRFGALVAKLIDGVLRMAAISASL--SPRQSLVLGSQGQVE--NL 146
Query: 218 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 277
R ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+ +K
Sbjct: 147 RKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAHRLGIGHIK 206
Query: 278 AELEDLCFAVLQ 289
ELEDL F L+
Sbjct: 207 WELEDLSFRYLE 218
>gi|346314576|ref|ZP_08856095.1| hypothetical protein HMPREF9022_01752 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373124054|ref|ZP_09537896.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 21_3]
gi|422327153|ref|ZP_16408180.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 6_1_45]
gi|345906311|gb|EGX76040.1| hypothetical protein HMPREF9022_01752 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371659886|gb|EHO25146.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 21_3]
gi|371663847|gb|EHO29031.1| RelA/SpoT family protein [Erysipelotrichaceae bacterium 6_1_45]
Length = 739
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 27/195 (13%)
Query: 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHD 159
N + + +A A++ H GQ+RK+G+PY+ H I G IL ML + T+ AG LHD
Sbjct: 31 NIDLITRAYLCAEKNHTGQYRKSGEPYIIHAIQVGYILTML-----RTGPKTIAAGFLHD 85
Query: 160 VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 214
VV+D ++ + + FG+EVA LV V+++ G L ++ A
Sbjct: 86 VVEDCDVTIQEMSDMFGEEVASLVESVTKI-----------------GALKFKDEKEYLA 128
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
++ R + + M D RV+LIKLADRLHNMRT+ + P K + +A ETL ++ +A RLG+
Sbjct: 129 SNHRKIFIAMAKDVRVILIKLADRLHNMRTLQYMRPEKQKKIASETLEVYAPIAHRLGIS 188
Query: 275 ALKAELEDLCFAVLQ 289
+K ELEDLCF L
Sbjct: 189 DIKNELEDLCFQYLN 203
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 417 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 476
R K LYSI+ KM K+ ++ D A+R++ CY L +H + P
Sbjct: 248 RSKHLYSIYKKMMTKNKRFEEILDLLAIRIITDTDTA---------CYETLGYIHAKYRP 298
Query: 477 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 536
I G F DYI PK + YQSLHT + DG+ EVQIRT+ M AE G+AAHW YKE N
Sbjct: 299 IPGRFKDYIAMPKVNMYQSLHTTIVAEDGNIFEVQIRTEAMDAVAEQGIAAHWRYKENIN 358
>gi|331697364|ref|YP_004333603.1| (p)ppGpp synthetase I SpoT/RelA [Pseudonocardia dioxanivorans
CB1190]
gi|326952053|gb|AEA25750.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudonocardia dioxanivorans
CB1190]
Length = 821
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 108/186 (58%), Gaps = 19/186 (10%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
+Q+A A+ H Q RK+GDPY+TH + ILA L T+VA +LHD V+D
Sbjct: 112 LQRAYDVAEAKHAHQKRKSGDPYITHPLAVATILAEL-----GMDTTTLVAALLHDTVED 166
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL + +FGDEVA LV GV++L V GT EA +R M++
Sbjct: 167 TDYSLERLRTDFGDEVAHLVDGVTKLD------------KVEFGTAA--EAETIRKMVVA 212
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M DPRV++IKL+DRLHNMRT+ LPP K A+ETL + LA RLG+ +K ELEDL
Sbjct: 213 MARDPRVLVIKLSDRLHNMRTMRFLPPEKQAKKARETLEVMAPLAHRLGMATVKWELEDL 272
Query: 284 CFAVLQ 289
FA+L
Sbjct: 273 SFAILH 278
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 74/122 (60%), Gaps = 9/122 (7%)
Query: 413 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 472
T+ R K YSI+ KM K ++D +RV+V + ++ CY+ + +VH
Sbjct: 319 TVEGRPKHYYSIYRKMIVKGRDFDDIHDLVGVRVLVDE---------VRDCYAAMGMVHA 369
Query: 473 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 532
LW P+ G F DYI P+ YQSLHT V GPDG LEVQIRT++MH AE G+AAHW YK
Sbjct: 370 LWQPMPGRFKDYIAQPRFGVYQSLHTTVIGPDGKPLEVQIRTREMHRTAEFGIAAHWRYK 429
Query: 533 ET 534
E+
Sbjct: 430 ES 431
>gi|257870870|ref|ZP_05650523.1| RelA/SpoT protein [Enterococcus gallinarum EG2]
gi|357051393|ref|ZP_09112586.1| GTP pyrophosphokinase [Enterococcus saccharolyticus 30_1]
gi|257805034|gb|EEV33856.1| RelA/SpoT protein [Enterococcus gallinarum EG2]
gi|355379902|gb|EHG27051.1| GTP pyrophosphokinase [Enterococcus saccharolyticus 30_1]
Length = 736
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 107/187 (57%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A AH QFRK+G+PY+ H I ILA L + TV G LHDVV+D
Sbjct: 28 VQKALDYATEAHKDQFRKSGEPYIIHPIQVAGILAEL-----QMDPHTVATGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L ++E FG +VA LV GV++L I HEE A + R ML
Sbjct: 83 TEVTLADLKEVFGADVAMLVDGVTKLGKIK--------------YKSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+++KLADRLHNMRT+ L K R +AQET+ I+ LA RLG+ +K ELE
Sbjct: 129 IAMAQDLRVIMVKLADRLHNMRTLKHLREDKQRRIAQETMEIYAPLAHRLGISRIKWELE 188
Query: 282 DLCFAVL 288
D+ L
Sbjct: 189 DISLRYL 195
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L +H
Sbjct: 238 IYGRPKHIYSIYRKMKDQKKQFNEIYDLLAIRVIVD---------SIKDCYAVLGTIHTK 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI PK + YQSLHT V GP G+ +E+QIRT +MHE AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGNPVEIQIRTHEMHEIAEFGVAAHWAYKE 348
>gi|345848758|ref|ZP_08801777.1| GTP pyrophosphokinase [Streptomyces zinciresistens K42]
gi|345639843|gb|EGX61331.1| GTP pyrophosphokinase [Streptomyces zinciresistens K42]
Length = 843
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV+KA A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 124 QVEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 178
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L + +FGD VA LV GV++L ++ + +A +R M++
Sbjct: 179 DTEYGLDQLRRDFGDSVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 224
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 225 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 284
Query: 283 LCFAVL 288
L FA+L
Sbjct: 285 LAFAIL 290
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 14/153 (9%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 329 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 379
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 380 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 439
Query: 530 LYKETGNKLQSISSMDESDIEASSSLSKDTDDH 562
YK+ ++++ + +A + K DDH
Sbjct: 440 KYKQ-----EAVAGASKVRTDAPRTSGKGKDDH 467
>gi|298157515|gb|EFH98596.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|257485907|ref|ZP_05639948.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416017928|ref|ZP_11564965.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416028609|ref|ZP_11571554.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422404211|ref|ZP_16481265.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422596420|ref|ZP_16670702.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605745|ref|ZP_16677758.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|422684161|ref|ZP_16742412.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|320323401|gb|EFW79489.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327598|gb|EFW83610.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330876402|gb|EGH10551.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330889400|gb|EGH22061.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|330986719|gb|EGH84822.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013486|gb|EGH93542.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQSISSMDESDI 549
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 98 IFNDEQVQKAIAFAKRAH-----HGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTV 152
+ + E +++A FA++A H G + ILA L K D++
Sbjct: 31 VLDREVMKQACEFARQAEQNDKAHKNHWAEGTSSFQTGLEIAEILADL-----KLDQDSL 85
Query: 153 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 212
VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 86 VAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQ 140
Query: 213 -EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RL
Sbjct: 141 AQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL 200
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F L+
Sbjct: 201 GIGHIKWELEDLSFRYLE 218
>gi|443325885|ref|ZP_21054559.1| (p)ppGpp synthetase, RelA/SpoT family [Xenococcus sp. PCC 7305]
gi|442794512|gb|ELS03925.1| (p)ppGpp synthetase, RelA/SpoT family [Xenococcus sp. PCC 7305]
Length = 750
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 113/198 (57%), Gaps = 19/198 (9%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A FA H GQ+RK+G+PY+ H + +A L+ G V T+ AG LHD+V+D
Sbjct: 41 RAFNFAYNLHEGQYRKSGEPYIAHPV----AVAGLLRDLGGDCV-TIAAGFLHDIVEDTD 95
Query: 166 ESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMV 225
+ IEE FG EV LV GV++LS N + R +A + R M L M
Sbjct: 96 ITPEQIEEMFGFEVRCLVEGVTKLSKFNFSSTKER------------QAENFRRMFLAMA 143
Query: 226 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 285
D RV+++KLADRLHNMRT+ L P K R +A ET I+ LA+RLG+ K ELEDLCF
Sbjct: 144 QDIRVIVVKLADRLHNMRTLEHLKPEKQRRIALETREIFAPLANRLGIGRFKWELEDLCF 203
Query: 286 AVLQMRA--DLASMWSPR 301
L+ A ++ S+ S R
Sbjct: 204 KYLEPEAYREIQSLISER 221
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 9/135 (6%)
Query: 412 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 471
+ L R K LY I+ KM+R+ ++YD A+R++V A + CY L +VH
Sbjct: 248 LELKGRPKHLYGIYQKMQRQQKKFEEIYDIAAIRIIV---------EANEQCYRSLAVVH 298
Query: 472 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 531
+ PI G F DYI PKP+ YQSLHT V G +G LEVQIRT +MH AE+G+AAHW Y
Sbjct: 299 DAFKPIPGRFKDYIGLPKPNRYQSLHTTVVGSNGRPLEVQIRTLEMHHIAEYGIAAHWKY 358
Query: 532 KETGNKLQSISSMDE 546
KETG+ ++S DE
Sbjct: 359 KETGSSEAPVNSDDE 373
>gi|402698898|ref|ZP_10846877.1| GTP pyrophosphokinase [Pseudomonas fragi A22]
Length = 750
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAILYRCVREGQVQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNAPDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|261492912|ref|ZP_05989458.1| hypothetical protein COK_1332 [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496738|ref|ZP_05993113.1| hypothetical protein COI_2456 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307577|gb|EEY08905.1| hypothetical protein COI_2456 [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261311453|gb|EEY12610.1| hypothetical protein COK_1332 [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 705
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 115/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E+V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDQEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA +V GVS+L ++L R R+
Sbjct: 66 VIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSKL---DKLKFRTRQ---------E 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
E + R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 114 AEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLGFEAMH 191
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 14/166 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K LYSI+ KMR+KD H + D A RVVV + + CY +L
Sbjct: 229 IEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDN---------VDNCYRVLGQ 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ P DYI PKP+GYQSLHT++ GP G +EVQIRT+ M + A+ G+ AHW
Sbjct: 280 MHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMGVTAHW 339
Query: 530 LYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
YKE + + + +S +E SS + + + +DLF
Sbjct: 340 RYKEGESHHNTTVQLKAQQWLQSIVELQSSAGNTAEFIDSVKSDLF 385
>gi|239815569|ref|YP_002944479.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus S110]
gi|239802146|gb|ACS19213.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus S110]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 94/146 (64%), Gaps = 18/146 (12%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV
Sbjct: 247 LERELQAE-----GVRATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 511
P ++ CY+ L VH ++PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 --PDVKDCYAALAWVHSHFLPIDEEFDDYIARPKPNGYQSLHTVVREMVDGKPGKPIEIQ 352
Query: 512 IRTQKMHEYAEHGLAAHWLYKETGNK 537
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 353 IRTEEMHDHAEHGVAAHWAYKEAGHK 378
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 106 KAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165
+A AFA+ + TG+ L H I+A + S +A +V AC
Sbjct: 40 RARAFAEPLIADEKLDTGENTLAHADAVAAIVAKMGGSEAMQAASYLVY---------AC 90
Query: 166 ESLGSIEEE----FGDEVAKLVAGVSRLSYINQLLRRHRR-INVNQGTLGHEEANDLRVM 220
+ L +E FGD A L ++L + + R + ++ +G G + N +R M
Sbjct: 91 QHLNRPQEVIAKVFGDNFAALAVETTKLVRVQEQARSASQGHHLAEGAAGAQTEN-VRKM 149
Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
LL D RVV+++LA RL +R A +VA+E+L ++ LA+RLG+W +K E+
Sbjct: 150 LLAFSRDLRVVMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEI 209
Query: 281 EDLCFAVLQ 289
EDL F L+
Sbjct: 210 EDLSFRFLE 218
>gi|14325225|dbj|BAB60670.1| Rel [Listeria monocytogenes]
Length = 738
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA FA+ + QFRK+G+PY+ H I IL L K TV +G LHDVV+D
Sbjct: 28 VKKAYEFARDSRKEQFRKSGEPYIIHPIQVAGILVEL-----KMDPSTVASGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +EE FG EVA LV GV++L I + H ++A + R M +
Sbjct: 83 TPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE----------QQAENHRKMFIA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA RLG+ +K ELED
Sbjct: 131 MAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDT 190
Query: 284 CFAVL 288
L
Sbjct: 191 ALRYL 195
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 529 WLYKETGNKLQSISSMD 545
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
>gi|433635663|ref|YP_007269290.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140070017]
gi|432167256|emb|CCK64767.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140070017]
Length = 790
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L T+VA
Sbjct: 75 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAEL-----GMDTTTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 130 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 235 SVKWELEDLSFAILH 249
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
>gi|398845089|ref|ZP_10602135.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
gi|398253944|gb|EJN39055.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
Length = 746
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 396 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 455
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 456 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 515
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 516 KMHEYAEHGLAAHWLYKETGNKLQS 540
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 210 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 268
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 269 SRLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 198 HRLGIGHIKWELEDLSFRYLE 218
>gi|417793474|ref|ZP_12440750.1| GTP diphosphokinase [Streptococcus oralis SK255]
gi|334272884|gb|EGL91238.1| GTP diphosphokinase [Streptococcus oralis SK255]
Length = 738
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 141/271 (52%), Gaps = 41/271 (15%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A H GQFRK+G+PY+ H I ILA L K TV G LHDVV+D
Sbjct: 28 VQKALIYAVDCHSGQFRKSGEPYIIHPIQVAGILAKL-----KLDAVTVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+L +E EFG +V +V GV++L V +L + A + R ML+
Sbjct: 83 TDATLDDLEREFGHDVRIIVDGVTKLG------------KVEYKSLEEQLAENHRKMLMA 130
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M +D RV+L+KL+DRLHNMRT+ L K +++ET+ I+ LA RLG+ ++K ELEDL
Sbjct: 131 MSEDIRVILVKLSDRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISSVKWELEDL 190
Query: 284 CFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDL 343
F L + + + + RR ER A DE T +E+ S ++L
Sbjct: 191 SFRYL----NPTEFYKITHMMKEKRR-----------EREALVDEVVTKLEEYT-SERNL 234
Query: 344 LEAVV--PFDILS------DRRKRTKFLHDL 366
+ P I S D++KR + ++DL
Sbjct: 235 KGKIYGRPKHIYSIYRKMQDKKKRFEEIYDL 265
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R ++ ++ Y++L VH L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFEEIYDLIAIRCILDTQSD---------VYAMLGYVHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WKPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|331083062|ref|ZP_08332179.1| hypothetical protein HMPREF0992_01103 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405064|gb|EGG84601.1| hypothetical protein HMPREF0992_01103 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 769
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + + KA A AH GQ RK+G+PY+ H + ILA L + +T+VAG
Sbjct: 48 HPSTDISMIDKAFQIANNAHKGQVRKSGEPYIIHPLCVAIILADL-----ELDKETIVAG 102
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D + I EEF EV LV GV++L QL ++ V +A
Sbjct: 103 LLHDVVEDTVMTSEEIREEFNAEVELLVDGVTKLG---QLNYSADKVEV--------QAE 151
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ +PP K + A+ET+ I+ +A RLG+
Sbjct: 152 NLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMPPHKQKEKARETMDIYAPIAQRLGISK 211
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL L+
Sbjct: 212 VKIELDDLSLKYLK 225
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L I+H +
Sbjct: 267 IDGRIKHFFSIYKKMVNQDKTIDQIYDLFAVRIIVD---------TVRDCYAALGIIHEM 317
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAHW YKE
Sbjct: 318 YKPIPGRFKDYIAMPKPNMYQSLHTTLIGPSGQPFEIQIRTFEMHRTAEYGIAAHWKYKE 377
Query: 534 TGN 536
N
Sbjct: 378 VSN 380
>gi|386289242|ref|ZP_10066377.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [gamma
proteobacterium BDW918]
gi|385277701|gb|EIF41678.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [gamma
proteobacterium BDW918]
Length = 726
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 18/191 (9%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
QV++A +A++AH GQ R++G+PY+TH + ILA + V +++A +LHDV++
Sbjct: 38 QVRRAYYYAEQAHEGQNRRSGEPYVTHPLAVASILAEM-----HMDVQSLMAAMLHDVIE 92
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D + + ++FGD VA+LV GVS+L+ RI + ++A + + M L
Sbjct: 93 DTHVTKQGLSDQFGDVVAELVDGVSKLT----------RIEFQ--SKAEQQAENFQKMAL 140
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M D RV+L+KLADRLHNMRT+ A+P K R +A+ETL I+ +A RLG+ ++ E ED
Sbjct: 141 AMAKDIRVILVKLADRLHNMRTLGAMPQDKRRRIARETLEIYAPIAQRLGMHNIRVEFED 200
Query: 283 LCFAVLQ-MRA 292
L F + MRA
Sbjct: 201 LGFMSMHPMRA 211
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G + R K L+SI+SKMR K + ++ D A R+VV ++ CY +L
Sbjct: 244 GHSANVIGREKHLFSIYSKMRNKRKSLKEIMDLYAFRIVVD---------SVDSCYRVLG 294
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
VH L+ P+ G+F DYI PK +GYQSLHT + G +G +E+QIRT +M E A +G+AAH
Sbjct: 295 CVHSLYKPVPGQFKDYIAIPKANGYQSLHTVLFGLEGVPIEIQIRTHEMEEMANNGIAAH 354
Query: 529 WLYKETGNKLQSISS 543
WLYK + + + SS
Sbjct: 355 WLYKSSDQEPKRNSS 369
>gi|302387920|ref|YP_003823742.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium saccharolyticum WM1]
gi|302198548|gb|ADL06119.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium saccharolyticum WM1]
Length = 774
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 16/186 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
++KA A+ AH Q RK+G+PY+ H + ILA L + +T+ AGILHDVV+D
Sbjct: 61 IEKAYHIAEEAHKDQRRKSGEPYIIHPLCVAIILADL-----EMDKETIAAGILHDVVED 115
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
SL ++ EFG+EVA LV GV++L+ I+ + + +A +LR M L
Sbjct: 116 TIMSLDELKAEFGEEVALLVDGVTKLTQISWSMDKMEI-----------QAENLRKMFLA 164
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A RLG+ +K EL+DL
Sbjct: 165 MAKDIRVIIIKLADRLHNMRTLQYMKPEKQKEKAKETMEIYAPIAHRLGISKIKIELDDL 224
Query: 284 CFAVLQ 289
LQ
Sbjct: 225 SLRYLQ 230
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+E + R+K +SI+ KM ++ + ++YD A+R++V +++ CY+ L
Sbjct: 267 GIEARVDGRVKHFFSIYKKMVNQNKTLDQIYDLFAVRIIVD---------SVKDCYAALG 317
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
++H ++ PI G F DYI PKP+ YQSLHT + G +G E+QIRT +MH AE+G+AAH
Sbjct: 318 VIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLIGNNGQPFEIQIRTYEMHRTAEYGIAAH 377
Query: 529 WLYKETGN 536
W YKE+G+
Sbjct: 378 WKYKESGS 385
>gi|254362254|ref|ZP_04978368.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Mannheimia
haemolytica PHL213]
gi|452745658|ref|ZP_21945491.1| pyrophosphate 3'-pyrophosphohydrolase [Mannheimia haemolytica
serotype 6 str. H23]
gi|153093829|gb|EDN74764.1| guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [Mannheimia
haemolytica PHL213]
gi|452086260|gb|EME02650.1| pyrophosphate 3'-pyrophosphohydrolase [Mannheimia haemolytica
serotype 6 str. H23]
Length = 705
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 115/198 (58%), Gaps = 18/198 (9%)
Query: 93 VTGY-PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDT 151
+ GY P E+V++A A+ AH GQ R +G+PY+TH + I+A + K +
Sbjct: 11 IQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEPYITHPVAVASIIAEM-----KLDQEA 65
Query: 152 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 211
V+A +LHDV++D + + EFG VA +V GVS+L ++L R R+
Sbjct: 66 VIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSKL---DKLKFRTRQ---------E 113
Query: 212 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 271
E + R M+L M D RVVLIKLADR HNMRT+ AL P K R +A+ETL I+ LA RL
Sbjct: 114 AEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAKETLEIYSPLAHRL 173
Query: 272 GLWALKAELEDLCFAVLQ 289
G+ +K ELEDL F +
Sbjct: 174 GIEHIKNELEDLGFEAMH 191
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 14/166 (8%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+E + R K LYSI+ KMR+KD H + D A RVVV + + CY +L
Sbjct: 229 IEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDN---------VDNCYRVLGQ 279
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H L+ P DYI PKP+GYQSLHT++ GP G +EVQIRT+ M + A+ G+ AHW
Sbjct: 280 MHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMGVTAHW 339
Query: 530 LYKETGNKLQSISSMD-----ESDIEASSSLSKDTDDHNPLDTDLF 570
YKE + + + +S +E +S + + + +DLF
Sbjct: 340 RYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLF 385
>gi|319940232|ref|ZP_08014584.1| GTP pyrophosphokinase [Streptococcus anginosus 1_2_62CV]
gi|319810534|gb|EFW06870.1| GTP pyrophosphokinase [Streptococcus anginosus 1_2_62CV]
Length = 738
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 108/188 (57%), Gaps = 21/188 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ +A H GQFR++G+PY+ H I ILA L K +V G LHDVV+D
Sbjct: 28 VQKALVYAVDRHRGQFRQSGEPYIIHPIQVAGILAKL-----KLDAVSVACGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L +E EFG EV +V GV++L + + HEE A + R ML
Sbjct: 83 TNATLDDLEREFGHEVRVIVDGVTKLGKVK--------------YMSHEEQLAENHRKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+L+KLADRLHNMRT+ L K +++ET+ I+ LA RLG+ ++K ELE
Sbjct: 129 MAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISSVKWELE 188
Query: 282 DLCFAVLQ 289
DL F L
Sbjct: 189 DLAFRYLN 196
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K +YSI+ KM+ K ++YD A+R ++ ++ Y++L +H L
Sbjct: 238 IYGRPKHIYSIYRKMQDKKKRFDEIYDLIAIRCILDTQSD---------VYAMLGYIHEL 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ G F DYI N K +GYQS+HT V GP G +E QIRT++MHE AE+G+AAHW YK+
Sbjct: 289 WRPMPGRFKDYIANRKANGYQSIHTTVYGPKG-PIEFQIRTKEMHEVAEYGVAAHWAYKK 347
>gi|302389921|ref|YP_003825742.1| (p)ppGpp synthetase I SpoT/RelA [Thermosediminibacter oceani DSM
16646]
gi|302200549|gb|ADL08119.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosediminibacter oceani DSM
16646]
Length = 721
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E V++A FAK AH GQ R +G+ ++ H + ILA L + T+ A +LHDVV
Sbjct: 21 ELVRRAYEFAKNAHDGQHRVSGELFIFHPLEVAMILADL-----ELDTITIAASLLHDVV 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D SL I + FG E+A LV GV++LS + T ++A +LR M
Sbjct: 76 EDTNYSLEDIAKNFGSEIALLVDGVTKLS------------KLEYKTKEEQQAENLRKMF 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+LIKLADRLHNMRT+ LP K + +A ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMAKDIRVILIKLADRLHNMRTLKYLPEKKQKEIAVETLEIFAPLAHRLGISKIKWELE 183
Query: 282 DLCFAVLQ 289
DL F L+
Sbjct: 184 DLAFRYLE 191
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM+ ++ +++D A+RV+V ++ CY+ L
Sbjct: 228 GIKAEIQGRPKHFYSIYKKMKEQNKSFEQIFDLTAVRVIVD---------TVRDCYAALG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
+VH LW PI G F DYI PKP+ YQSLHT V G LE+QIRT +MH+ AE+G+AAH
Sbjct: 279 VVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIDSSGEPLEIQIRTYEMHKTAEYGIAAH 338
Query: 529 WLYKETGNK 537
W YKE GNK
Sbjct: 339 WRYKE-GNK 346
>gi|407069638|ref|ZP_11100476.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis
pyrophosphate 3'-pyrophosphohydrolase [Vibrio
cyclitrophicus ZF14]
Length = 708
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++++ A+ AH GQ R +G+PY+ H + RILA + + ++T+ A +LHDV+
Sbjct: 21 EALRQSYVVARDAHEGQTRSSGEPYIIHPVAVSRILAEM-----RLDIETLQAALLHDVI 75
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D + +E +FG+ VA+LV GVS+L ++L R R+ +A + R M+
Sbjct: 76 EDCDVTKEDLEAKFGNTVAELVDGVSKL---DKLKFRDRK---------EAQAENFRKMV 123
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L MV D RV+LIKLADR HNMRT+ AL P K R +A+ETL I+ LA RLG+ +K ELE
Sbjct: 124 LAMVQDIRVILIKLADRTHNMRTLGALRPDKKRRIARETLEIYSPLAHRLGIHNIKTELE 183
Query: 282 DLCFAVL 288
+L F L
Sbjct: 184 ELGFEAL 190
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G+ + R K+L+SI++KM+ K+ H + D A RVVV + CY +L
Sbjct: 228 GLPARVLGREKNLFSIYNKMKTKEQRFHTIMDIYAFRVVVDTPD---------TCYRVLG 278
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QAHSLYKPRPGRMKDYIAVPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 529 WLYKETGNK 537
W YK G +
Sbjct: 339 WSYKGNGAR 347
>gi|18310920|ref|NP_562854.1| GTP pyrophosphokinase [Clostridium perfringens str. 13]
gi|18145602|dbj|BAB81644.1| GTP pyrophosphokinase [Clostridium perfringens str. 13]
Length = 726
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 20/239 (8%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
V+KA A AH Q R++G+PY+TH I ILA + + +T+VAG+LHDV++D
Sbjct: 21 VKKAYDLAFEAHKEQKRESGEPYITHPISVAMILADMGMDT-----NTIVAGLLHDVIED 75
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 223
+ I F EVA LV GV++L I + ++A+++R MLL
Sbjct: 76 TDYTYEDISNIFNVEVANLVDGVTKLGKIKYKSKEE------------QQADNVRKMLLA 123
Query: 224 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 283
M D RV++IKLADRLHNMRT+ + P K + AQETL I+ LA RLG+ +K ELEDL
Sbjct: 124 MAKDIRVIIIKLADRLHNMRTLKYMKPEKQKKKAQETLDIFAPLAHRLGISKIKWELEDL 183
Query: 284 CFAVL--QMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 340
C + + DL +M + + RV + I+ I+ + A+ D +H S+
Sbjct: 184 CLRYIHPEEYYDLVNMIAEK-RVEREKFISRIIKELKENLDKANIDSDIEGRPKHFYSI 241
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 15/143 (10%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R K YSI+ KM K I +++D A+R++V ++ CY++L IVH +
Sbjct: 231 IEGRPKHFYSIYRKMVNKHKSIEQIFDLTAIRILVN---------TVKDCYAVLGIVHTI 281
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V G +G E+QIRT +MH AE+G+AAHW YK
Sbjct: 282 YKPIPGRFKDYIAMPKPNMYQSLHTTVIGSEGKTFEIQIRTFEMHRTAEYGIAAHWKYK- 340
Query: 534 TGNKLQSISSMDESDIEASSSLS 556
I+ D D+ + L+
Sbjct: 341 -----SGINGTDSKDMTFENKLT 358
>gi|357388383|ref|YP_004903222.1| putative GTP pyrophosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Kitasatospora setae KM-6054]
gi|311894858|dbj|BAJ27266.1| putative GTP pyrophosphokinase/guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Kitasatospora setae KM-6054]
Length = 763
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 19/187 (10%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
+ +++A A A++ H GQ RK+GDPY+TH + ILA L G A T++AG+LHD V
Sbjct: 40 KDIERAYAVAEKWHRGQKRKSGDPYITHPLAVATILAEL----GMDA-PTLMAGLLHDTV 94
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D L ++ ++FGD VA LV GV++L R+ + +A +R M+
Sbjct: 95 EDTDYGLETLRQDFGDSVALLVDGVTKLD----------RVKFGEAA----QAETVRKMV 140
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELE
Sbjct: 141 VAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELE 200
Query: 282 DLCFAVL 288
DL FA+L
Sbjct: 201 DLAFAIL 207
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 415 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLW 474
+ R K YS++ KM + ++YD +RV+V ++ CY+ L +H W
Sbjct: 251 TGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGTIHARW 301
Query: 475 IPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW YK+
Sbjct: 302 NPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHWKYKQ 360
>gi|374985148|ref|YP_004960643.1| ppGpp synthetase [Streptomyces bingchenggensis BCW-1]
gi|297155800|gb|ADI05512.1| ppGpp synthetase [Streptomyces bingchenggensis BCW-1]
Length = 832
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 19/186 (10%)
Query: 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162
Q+++A A+R H GQ RK+GDPY+TH + ILA L T++AG+LHD V+
Sbjct: 115 QIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPA-----TLMAGLLHDTVE 169
Query: 163 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 222
D L ++ +FGD+VA LV GV++L ++ + +A +R M++
Sbjct: 170 DTEYGLDTLRRDFGDQVALLVDGVTKLD----------KVKFGEAA----QAETVRKMVV 215
Query: 223 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 282
M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA RLG+ +K ELED
Sbjct: 216 AMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELED 275
Query: 283 LCFAVL 288
L FA+L
Sbjct: 276 LAFAIL 281
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 320 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 370
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
+H W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 371 IHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPSGKPVELQIRTFDMHRRAEYGIAAHW 430
Query: 530 LYKE 533
YK+
Sbjct: 431 KYKQ 434
>gi|260589630|ref|ZP_05855543.1| GTP diphosphokinase [Blautia hansenii DSM 20583]
gi|260539870|gb|EEX20439.1| GTP diphosphokinase [Blautia hansenii DSM 20583]
Length = 769
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 16/194 (8%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
+P + + KA A AH GQ RK+G+PY+ H + ILA L + +T+VAG
Sbjct: 48 HPSTDISMIDKAFQIANNAHKGQVRKSGEPYIIHPLCVAIILADL-----ELDKETIVAG 102
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHDVV+D + I EEF EV LV GV++L QL ++ V +A
Sbjct: 103 LLHDVVEDTVMTSEEIREEFNAEVELLVDGVTKLG---QLNYSADKVEV--------QAE 151
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+LR M L M D RV+LIKLADRLHNMRT+ +PP K + A+ET+ I+ +A RLG+
Sbjct: 152 NLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMPPHKQKEKARETMDIYAPIAQRLGISK 211
Query: 276 LKAELEDLCFAVLQ 289
+K EL+DL L+
Sbjct: 212 VKIELDDLSLKYLK 225
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+ R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L I+H +
Sbjct: 267 IDGRIKHFFSIYKKMVNQDKTIDQIYDLFAVRIIVD---------TVRDCYAALGIIHEM 317
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT + GP G E+QIRT +MH AE+G+AAHW YKE
Sbjct: 318 YKPIPGRFKDYIAMPKPNMYQSLHTTLIGPSGQPFEIQIRTFEMHRTAEYGIAAHWKYKE 377
Query: 534 TGN 536
N
Sbjct: 378 VSN 380
>gi|424779945|ref|ZP_18206831.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Catellicoccus
marimammalium M35/04/3]
gi|422843484|gb|EKU27921.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Catellicoccus
marimammalium M35/04/3]
Length = 724
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 106/187 (56%), Gaps = 21/187 (11%)
Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
VQKA+ FA +AH Q RK+G+PY+ H I L + TV AG LHDVV+D
Sbjct: 28 VQKALDFATKAHAPQVRKSGEPYIIHPIQVANTLVEIHTDPC-----TVAAGFLHDVVED 82
Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221
+L I EEF D+VA +V GV++L I HEE A + + ML
Sbjct: 83 TPVTLEEIAEEFNDDVAAIVDGVTKLGKIK--------------YKSHEEQLAENHQKML 128
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
L M D RV+L+KLADRLHNMRT+ L P K R +A+ETL I+ LA+RLG+ +K ELE
Sbjct: 129 LAMAQDLRVILVKLADRLHNMRTLKYLRPDKQRRIAKETLEIYAPLANRLGMSRIKWELE 188
Query: 282 DLCFAVL 288
D L
Sbjct: 189 DRSLRYL 195
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
++ R K +YSI+ KM + ++YD A+R++V + I+ CY++L VH
Sbjct: 238 INGRPKHIYSIYRKMHDQKKSFEEIYDLTAIRIIVDN---------IKECYAILGAVHTR 288
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
W P+ F DYI PK + YQSLHT V GP G +E+QIRT +MH+ AE G+AAHW YK+
Sbjct: 289 WTPMPKRFKDYIAMPKANMYQSLHTTVIGPGGRPIEIQIRTHEMHKIAEFGVAAHWAYKQ 348
Query: 534 -TGNKLQSISSMDESD-IEASSSLSKDTDD 561
+K++ ++ + D L KD++D
Sbjct: 349 GKKDKVKGDNTDQQLDWFREIIELQKDSND 378
>gi|282899912|ref|ZP_06307873.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
gi|281195182|gb|EFA70118.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
Length = 756
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 107/183 (58%), Gaps = 17/183 (9%)
Query: 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166
A+ FA H GQ+RK+G+PY+ H I +L L S+ + AG LHDVV+D
Sbjct: 46 ALKFAYELHEGQYRKSGEPYIAHPIAVADLLRDLGCSAT-----MIAAGFLHDVVEDTEV 100
Query: 167 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 226
++ IE++FG EV +LV GV++LS +IN T +A + R M L M
Sbjct: 101 TIEDIEQKFGHEVRQLVEGVTKLS----------KINFTSKT--ESQAENFRRMFLSMAQ 148
Query: 227 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 286
D RV+++KLADRLHNMRT+ + R AQET I+ LA+RLG+W +K ELEDL F
Sbjct: 149 DIRVIVVKLADRLHNMRTLQYMSETSRRRSAQETRDIFAPLANRLGIWHIKWELEDLAFK 208
Query: 287 VLQ 289
L+
Sbjct: 209 YLE 211
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 473
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH
Sbjct: 254 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETN---------EECYRALAVVHDA 304
Query: 474 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FCPIPGRFKDYIGLPKPNRYQSLHTCVIGLTGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 364
Query: 534 TGNKLQSISSMDE 546
TG ++ DE
Sbjct: 365 TGGSTAQVTGTDE 377
>gi|15609720|ref|NP_217099.1| Probable GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium tuberculosis H37Rv]
gi|31793767|ref|NP_856260.1| GTP pyrophosphokinase [Mycobacterium bovis AF2122/97]
gi|121638468|ref|YP_978692.1| GTP pyrophosphokinase relA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662422|ref|YP_001283945.1| GTP pyrophosphokinase [Mycobacterium tuberculosis H37Ra]
gi|148823778|ref|YP_001288532.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis F11]
gi|167968805|ref|ZP_02551082.1| GTP pyrophosphokinase [Mycobacterium tuberculosis H37Ra]
gi|224990962|ref|YP_002645649.1| GTP pyrophosphokinase [Mycobacterium bovis BCG str. Tokyo 172]
gi|254551634|ref|ZP_05142081.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448232|ref|ZP_06437976.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis CPHL_A]
gi|289575291|ref|ZP_06455518.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis K85]
gi|289746375|ref|ZP_06505753.1| GTP pyrophosphokinase [Mycobacterium tuberculosis 02_1987]
gi|289754701|ref|ZP_06514079.1| GTP pyrophosphokinase [Mycobacterium tuberculosis EAS054]
gi|289758713|ref|ZP_06518091.1| GTP pyrophosphokinase [Mycobacterium tuberculosis T85]
gi|297635193|ref|ZP_06952973.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN 4207]
gi|297732185|ref|ZP_06961303.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN R506]
gi|298526056|ref|ZP_07013465.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis 94_M4241A]
gi|306776857|ref|ZP_07415194.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu001]
gi|306789984|ref|ZP_07428306.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu004]
gi|306804342|ref|ZP_07441010.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu008]
gi|306969820|ref|ZP_07482481.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu009]
gi|306972971|ref|ZP_07485632.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu010]
gi|307080682|ref|ZP_07489852.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu011]
gi|308369761|ref|ZP_07418958.2| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu002]
gi|308371063|ref|ZP_07423706.2| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu003]
gi|308373451|ref|ZP_07432367.2| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu005]
gi|308375545|ref|ZP_07444286.2| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu007]
gi|313659519|ref|ZP_07816399.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN V2475]
gi|339632611|ref|YP_004724253.1| GTP pyrophosphokinase [Mycobacterium africanum GM041182]
gi|340627600|ref|YP_004746052.1| putative GTP pyrophosphokinase RELA [Mycobacterium canettii CIPT
140010059]
gi|375295601|ref|YP_005099868.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN 4207]
gi|378772323|ref|YP_005172056.1| putative GTP pyrophosphokinase [Mycobacterium bovis BCG str.
Mexico]
gi|385991886|ref|YP_005910184.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CCDC5180]
gi|385995507|ref|YP_005913805.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CCDC5079]
gi|385999363|ref|YP_005917662.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CTRI-2]
gi|392387220|ref|YP_005308849.1| relA [Mycobacterium tuberculosis UT205]
gi|392431808|ref|YP_006472852.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN 605]
gi|397674489|ref|YP_006516024.1| bifunctional (p)ppGpp synthase/hydrolase relA [Mycobacterium
tuberculosis H37Rv]
gi|424804921|ref|ZP_18230352.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis W-148]
gi|424948248|ref|ZP_18363944.1| GTP pyrophosphokinase [Mycobacterium tuberculosis NCGM2209]
gi|433627716|ref|YP_007261345.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140060008]
gi|433642783|ref|YP_007288542.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140070008]
gi|449064661|ref|YP_007431744.1| GTP pyrophosphokinase [Mycobacterium bovis BCG str. Korea 1168P]
gi|54039047|sp|P66015.1|RELA_MYCBO RecName: Full=Probable GTP pyrophosphokinase; AltName:
Full=(p)ppGpp synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|31619361|emb|CAD94799.1| PROBABLE GTP PYROPHOSPHOKINASE RELA (ATP:GTP
3'-PYROPHOSPHOTRANSFERASE) (PPGPP SYNTHETASE I)
((P)PPGPP SYNTHETASE) (GTP DIPHOSPHOKINASE)
[Mycobacterium bovis AF2122/97]
gi|121494116|emb|CAL72594.1| Probable GTP pyrophosphokinase relA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506574|gb|ABQ74383.1| GTP pyrophosphokinase RelA [Mycobacterium tuberculosis H37Ra]
gi|148722305|gb|ABR06930.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis F11]
gi|224774075|dbj|BAH26881.1| putative GTP pyrophosphokinase [Mycobacterium bovis BCG str. Tokyo
172]
gi|289421190|gb|EFD18391.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis CPHL_A]
gi|289539722|gb|EFD44300.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis K85]
gi|289686903|gb|EFD54391.1| GTP pyrophosphokinase [Mycobacterium tuberculosis 02_1987]
gi|289695288|gb|EFD62717.1| GTP pyrophosphokinase [Mycobacterium tuberculosis EAS054]
gi|289714277|gb|EFD78289.1| GTP pyrophosphokinase [Mycobacterium tuberculosis T85]
gi|298495850|gb|EFI31144.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis 94_M4241A]
gi|308214783|gb|EFO74182.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu001]
gi|308326555|gb|EFP15406.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu002]
gi|308329977|gb|EFP18828.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu003]
gi|308333594|gb|EFP22445.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu004]
gi|308337621|gb|EFP26472.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu005]
gi|308345940|gb|EFP34791.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu007]
gi|308349094|gb|EFP37945.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu008]
gi|308352629|gb|EFP41480.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu009]
gi|308357662|gb|EFP46513.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu010]
gi|308361603|gb|EFP50454.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis SUMu011]
gi|326904197|gb|EGE51130.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis W-148]
gi|328458106|gb|AEB03529.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN 4207]
gi|339295461|gb|AEJ47572.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CCDC5079]
gi|339299079|gb|AEJ51189.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CCDC5180]
gi|339331967|emb|CCC27670.1| putative GTP pyrophosphokinase RELA (ATP:GTP
3'-pyrophosphotransferase) [Mycobacterium africanum
GM041182]
gi|340005790|emb|CCC44956.1| putative GTP pyrophosphokinase RELA (ATP:GTP
3'-pyrophosphotransferase) (ppGpp synthetase I)
((p)ppGpp synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140010059]
gi|344220410|gb|AEN01041.1| GTP pyrophosphokinase [Mycobacterium tuberculosis CTRI-2]
gi|356594644|gb|AET19873.1| Putative GTP pyrophosphokinase [Mycobacterium bovis BCG str.
Mexico]
gi|358232763|dbj|GAA46255.1| GTP pyrophosphokinase [Mycobacterium tuberculosis NCGM2209]
gi|378545771|emb|CCE38049.1| relA [Mycobacterium tuberculosis UT205]
gi|379028893|dbj|BAL66626.1| GTP pyrophosphokinase [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|392053217|gb|AFM48775.1| GTP pyrophosphokinase relA [Mycobacterium tuberculosis KZN 605]
gi|395139394|gb|AFN50553.1| bifunctional (p)ppGpp synthase/hydrolase relA [Mycobacterium
tuberculosis H37Rv]
gi|432155322|emb|CCK52572.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140060008]
gi|432159331|emb|CCK56635.1| Putative GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium canettii CIPT 140070008]
gi|440582059|emb|CCG12462.1| putative GTP PYROPHOSPHOKINASE RELA (ATP:GTP
3'-PYROPHOSPHOTRANSFERASE) (PPGPP SYNTHETASE I)
((P)PPGPP SYNTHETASE) (GTP DIPHOSPHOKINASE)
[Mycobacterium tuberculosis 7199-99]
gi|444896118|emb|CCP45379.1| Probable GTP pyrophosphokinase RelA (ATP:GTP
3'-pyrophosphotransferase) (PPGPP synthetase I)
((P)PPGPP synthetase) (GTP diphosphokinase)
[Mycobacterium tuberculosis H37Rv]
gi|449033169|gb|AGE68596.1| GTP pyrophosphokinase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 790
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +Q+A A + H Q R++GDPY+TH + ILA L T+VA
Sbjct: 75 YPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAEL-----GMDTTTLVAA 129
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
+LHD V+D +L ++ EEFG+EV LV GV++L + LG E
Sbjct: 130 LLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLGSAAEG 174
Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
+R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 175 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 234
Query: 275 ALKAELEDLCFAVLQ 289
++K ELEDL FA+L
Sbjct: 235 SVKWELEDLSFAILH 249
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 401 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 460
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 461 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 520
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 521 AEHGLAAHWLYKETGNK 537
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
>gi|404445132|ref|ZP_11010277.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium vaccae ATCC 25954]
gi|403652652|gb|EJZ07679.1| (p)ppGpp synthetase I SpoT/RelA [Mycobacterium vaccae ATCC 25954]
Length = 803
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
YP + +QKA A++ H Q R++GDPY+TH + ILA L T++A
Sbjct: 88 YPKADLTLLQKAYEVAEQRHADQLRRSGDPYITHPLAVANILAEL-----GMDTTTLIAA 142
Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 215
+LHD V+D +L ++ +EFG EV LV GV++L V GT E
Sbjct: 143 LLHDTVEDTGYTLEALTQEFGVEVGHLVDGVTKLD------------KVALGTAA--EGE 188
Query: 216 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 275
+R M++ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA RLG+
Sbjct: 189 TIRKMIIAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMAT 248
Query: 276 LKAELEDLCFAVLQ 289
+K ELEDL FA+L
Sbjct: 249 VKWELEDLSFAILH 262
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 410 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 469
+ T+ R K +SI+ KM K ++D +R++ + ++ CY+ + +
Sbjct: 300 IHATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------VRDCYAAVGV 350
Query: 470 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 529
VH LW PI G F DYI P+ YQSLHT V GP+G LEVQIRT MH+ AE+G+AAHW
Sbjct: 351 VHSLWQPIAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTIDMHKTAEYGIAAHW 410
Query: 530 LYKETGNK 537
YKE +
Sbjct: 411 RYKEAKGR 418
>gi|387894956|ref|YP_006325253.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388467232|ref|ZP_10141442.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
gi|387163946|gb|AFJ59145.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388010812|gb|EIK71999.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
Length = 747
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 529 WLYKETGNKLQS 540
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Query: 150 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 209
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 210 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 269
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 270 RLGLWALKAELEDLCFAVLQ 289
RLG+ +K ELEDL F L+
Sbjct: 199 RLGIGHIKWELEDLSFRYLE 218
>gi|397906545|ref|ZP_10507345.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Caloramator
australicus RC3]
gi|397160502|emb|CCJ34682.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Caloramator
australicus RC3]
Length = 722
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 17/188 (9%)
Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
E ++KA A++AH GQ R++GDPY+ H + IL + + D + A +LHDVV
Sbjct: 19 EMIKKAYNVAEKAHEGQLRESGDPYILHPVEVAIILVEMGLDT-----DAICAALLHDVV 73
Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
+D S ++ EF + +A LV GV++L I + ++A ++R +L
Sbjct: 74 EDTHLSYEDVKREFNESIADLVDGVTKLGKIEYKSKEE------------QQAENIRKVL 121
Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
+ M D RV+LIKLADRLHNMRT+ LPP K +A A+ETL I+ LA RLG+ +K ELE
Sbjct: 122 IAMAKDIRVILIKLADRLHNMRTLKYLPPEKQKAKAEETLDIYAPLAHRLGISKIKWELE 181
Query: 282 DLCFAVLQ 289
DL L
Sbjct: 182 DLSLRYLH 189
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 409 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 468
G++ + R K YSI+ KM K+ +++D A+RV+V ++ CY+ L
Sbjct: 226 GIKADIDGRPKHFYSIYRKMHYKNKTFDQIFDLLAVRVIVD---------TVKDCYAALG 276
Query: 469 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 528
IVH LW PI G F DYI PKP+ YQSLH+ V GP+G E+QIRT +MH AE+G+AAH
Sbjct: 277 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHSTVIGPNGQPFEIQIRTWEMHRTAEYGIAAH 336
Query: 529 WLYKETGN 536
W YKE N
Sbjct: 337 WKYKEGIN 344
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,648,823,667
Number of Sequences: 23463169
Number of extensions: 523805808
Number of successful extensions: 1438000
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5266
Number of HSP's successfully gapped in prelim test: 1532
Number of HSP's that attempted gapping in prelim test: 1406146
Number of HSP's gapped (non-prelim): 17818
length of query: 830
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 679
effective length of database: 8,816,256,848
effective search space: 5986238399792
effective search space used: 5986238399792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)