Query 003318
Match_columns 830
No_of_seqs 491 out of 2433
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 21:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-127 3E-132 1109.3 32.8 464 94-680 17-500 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 4E-122 9E-127 1077.7 30.0 464 94-677 25-518 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 3E-120 6E-125 1063.9 35.4 455 100-678 19-497 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 5E-113 1E-117 1004.4 33.6 447 107-677 1-470 (683)
5 KOG1157 Predicted guanosine po 100.0 2.8E-73 6E-78 609.9 23.0 329 98-538 71-401 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 7.9E-39 1.7E-43 313.1 5.1 153 107-274 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 99.9 4E-27 8.6E-32 223.9 12.5 119 390-523 5-129 (129)
8 PF04607 RelA_SpoT: Region fou 99.9 9.8E-28 2.1E-32 223.1 7.4 108 416-534 1-114 (115)
9 COG0317 SpoT Guanosine polypho 99.9 7.2E-27 1.6E-31 272.2 8.0 91 731-830 354-448 (701)
10 COG2357 PpGpp synthetase catal 99.9 1.6E-25 3.5E-30 230.6 10.1 132 394-538 37-181 (231)
11 PRK11092 bifunctional (p)ppGpp 99.9 9.9E-26 2.1E-30 266.4 8.2 91 731-830 353-447 (702)
12 PRK10872 relA (p)ppGpp synthet 99.9 6E-24 1.3E-28 251.1 7.4 92 730-830 370-465 (743)
13 TIGR00691 spoT_relA (p)ppGpp s 99.9 1.8E-22 3.9E-27 239.1 8.2 91 731-830 327-421 (683)
14 PF02824 TGS: TGS domain; Int 99.5 1.6E-14 3.4E-19 121.5 4.3 56 775-830 1-60 (60)
15 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.4E-09 3.1E-14 95.9 4.5 48 782-830 22-76 (76)
16 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 6.4E-09 1.4E-13 91.6 5.3 49 782-830 16-75 (75)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 3.1E-08 6.6E-13 81.6 7.2 56 775-830 1-60 (60)
18 PF02824 TGS: TGS domain; Int 98.2 3.7E-07 8.1E-12 77.0 1.6 49 568-623 2-60 (60)
19 cd01616 TGS The TGS domain, na 98.2 6E-06 1.3E-10 66.2 6.9 54 777-830 3-60 (60)
20 PRK01777 hypothetical protein; 98.0 1.5E-05 3.2E-10 73.6 7.0 56 773-829 7-74 (95)
21 cd04938 TGS_Obg-like TGS_Obg-l 98.0 1.7E-05 3.7E-10 70.2 6.4 48 783-830 24-76 (76)
22 PRK09602 translation-associate 97.9 1.2E-05 2.6E-10 91.1 4.7 46 784-830 342-394 (396)
23 TIGR03276 Phn-HD phosphonate d 97.8 6E-05 1.3E-09 76.9 7.9 71 115-190 13-102 (179)
24 PRK05659 sulfur carrier protei 97.8 5.4E-05 1.2E-09 64.4 6.3 53 778-830 3-61 (66)
25 PRK06944 sulfur carrier protei 97.6 0.00016 3.6E-09 61.2 6.3 52 779-830 4-60 (65)
26 cd01667 TGS_ThrRS_N TGS _ThrRS 97.6 0.00021 4.5E-09 57.6 6.4 54 777-830 3-60 (61)
27 PRK06437 hypothetical protein; 97.5 0.00019 4.2E-09 62.0 6.1 52 779-830 6-62 (67)
28 cd00565 ThiS ThiaminS ubiquiti 97.5 0.00022 4.8E-09 60.8 5.5 51 780-830 4-60 (65)
29 PRK07440 hypothetical protein; 97.5 0.00026 5.7E-09 61.7 6.1 54 777-830 6-65 (70)
30 COG2104 ThiS Sulfur transfer p 97.4 0.00035 7.5E-09 60.9 5.8 50 781-830 8-63 (68)
31 PRK08364 sulfur carrier protei 97.3 0.00052 1.1E-08 59.7 6.3 47 784-830 17-65 (70)
32 PRK07696 sulfur carrier protei 97.3 0.00038 8.3E-09 60.1 5.4 52 779-830 4-62 (67)
33 TIGR01683 thiS thiamine biosyn 97.2 0.00072 1.6E-08 57.5 6.1 50 781-830 4-59 (64)
34 PRK08053 sulfur carrier protei 97.1 0.0013 2.9E-08 56.4 6.2 52 779-830 4-61 (66)
35 cd01669 TGS_Ygr210_C TGS_Ygr21 96.9 0.00052 1.1E-08 60.9 2.4 43 576-623 27-76 (76)
36 PF14451 Ub-Mut7C: Mut7-C ubiq 96.9 0.0018 4E-08 58.2 5.7 46 784-829 26-74 (81)
37 PF03658 Ub-RnfH: RnfH family 96.9 0.00084 1.8E-08 60.8 3.5 55 774-829 5-71 (84)
38 PRK06488 sulfur carrier protei 96.8 0.0029 6.2E-08 54.0 5.7 50 780-830 5-60 (65)
39 cd01666 TGS_DRG_C TGS_DRG_C: 96.7 0.0006 1.3E-08 60.4 1.3 46 576-623 21-75 (75)
40 PRK05863 sulfur carrier protei 96.2 0.0078 1.7E-07 51.6 5.1 53 778-830 3-60 (65)
41 PRK06083 sulfur carrier protei 96.1 0.013 2.9E-07 53.1 6.3 57 774-830 17-79 (84)
42 cd00754 MoaD Ubiquitin domain 96.0 0.012 2.7E-07 51.3 5.5 48 783-830 18-75 (80)
43 PLN02799 Molybdopterin synthas 95.9 0.017 3.6E-07 51.3 5.8 49 781-829 19-76 (82)
44 PF02597 ThiS: ThiS family; I 95.2 0.028 6.1E-07 48.6 4.5 47 783-829 14-71 (77)
45 cd01668 TGS_RelA_SpoT TGS_RelA 95.1 0.017 3.6E-07 47.4 2.7 48 569-623 3-60 (60)
46 PTZ00258 GTP-binding protein; 95.0 0.034 7.3E-07 63.5 5.9 56 774-829 304-385 (390)
47 COG1163 DRG Predicted GTPase [ 94.8 0.02 4.2E-07 63.5 3.0 45 785-829 308-363 (365)
48 PRK14707 hypothetical protein; 94.1 0.13 2.7E-06 67.7 8.3 108 415-534 2308-2424(2710)
49 TIGR01682 moaD molybdopterin c 94.0 0.13 2.8E-06 45.5 5.9 47 783-829 18-74 (80)
50 COG2914 Uncharacterized protei 93.8 0.079 1.7E-06 49.0 4.3 54 771-829 12-74 (99)
51 PLN02908 threonyl-tRNA synthet 93.6 0.35 7.6E-06 59.1 10.7 58 773-830 50-112 (686)
52 PRK12444 threonyl-tRNA synthet 92.4 0.26 5.5E-06 59.6 7.0 56 775-830 6-65 (639)
53 cd01616 TGS The TGS domain, na 91.2 0.17 3.7E-06 40.1 2.6 41 576-623 13-60 (60)
54 TIGR03401 cyanamide_fam HD dom 91.1 0.83 1.8E-05 48.7 8.3 63 93-162 30-96 (228)
55 smart00471 HDc Metal dependent 90.4 0.12 2.6E-06 46.1 1.2 43 123-165 2-45 (124)
56 PF01966 HD: HD domain; Inter 89.8 0.49 1.1E-05 42.8 4.7 38 127-164 2-41 (122)
57 TIGR01687 moaD_arch MoaD famil 89.8 0.66 1.4E-05 41.5 5.4 45 784-829 19-82 (88)
58 PRK12703 tRNA 2'-O-methylase; 89.2 1.8 4E-05 48.8 9.4 153 103-284 171-331 (339)
59 TIGR02988 YaaA_near_RecF S4 do 88.5 0.41 9E-06 40.0 2.9 27 802-828 31-58 (59)
60 PRK11130 moaD molybdopterin sy 88.4 1.4 3.1E-05 39.2 6.4 41 789-829 24-75 (81)
61 PRK09602 translation-associate 88.3 0.17 3.8E-06 57.8 0.7 45 576-625 345-396 (396)
62 PRK01777 hypothetical protein; 87.1 0.49 1.1E-05 44.0 2.7 23 601-625 55-77 (95)
63 PF01479 S4: S4 domain; Inter 86.3 0.38 8.3E-06 38.3 1.4 25 802-826 23-48 (48)
64 cd01764 Urm1 Urm1-like ubuitin 85.4 1.6 3.4E-05 40.4 5.2 41 789-829 27-88 (94)
65 PRK14707 hypothetical protein; 85.2 1.9 4E-05 57.6 7.3 103 419-533 2544-2654(2710)
66 PF14453 ThiS-like: ThiS-like 84.6 2.9 6.3E-05 35.6 5.9 49 781-829 6-54 (57)
67 PRK05659 sulfur carrier protei 84.5 0.89 1.9E-05 38.6 2.9 43 575-624 11-62 (66)
68 PRK09169 hypothetical protein; 83.8 3.1 6.8E-05 56.1 8.6 108 415-534 1917-2034(2316)
69 PRK09601 GTP-binding protein Y 82.8 1.3 2.8E-05 50.4 4.2 47 783-829 292-361 (364)
70 smart00363 S4 S4 RNA-binding d 81.5 1.3 2.8E-05 35.0 2.6 25 804-828 25-50 (60)
71 cd01667 TGS_ThrRS_N TGS _ThrRS 81.2 1.3 2.8E-05 35.3 2.6 41 576-623 13-60 (61)
72 PRK00413 thrS threonyl-tRNA sy 80.8 1.2 2.5E-05 53.9 3.0 46 575-627 13-65 (638)
73 COG2104 ThiS Sulfur transfer p 79.9 1.5 3.3E-05 38.4 2.7 41 576-623 14-63 (68)
74 COG1188 Ribosome-associated he 78.9 2.1 4.4E-05 40.4 3.3 25 805-829 34-58 (100)
75 PF03658 Ub-RnfH: RnfH family 78.7 1 2.2E-05 41.2 1.2 21 602-624 53-73 (84)
76 cd00565 ThiS ThiaminS ubiquiti 77.4 1.9 4.1E-05 36.7 2.5 22 601-624 36-61 (65)
77 PRK07440 hypothetical protein; 76.9 2.4 5.1E-05 37.1 3.0 43 575-624 15-66 (70)
78 COG1418 Predicted HD superfami 75.2 3.2 7E-05 44.1 4.1 45 122-166 33-77 (222)
79 PRK06437 hypothetical protein; 73.9 2.2 4.7E-05 37.0 2.0 42 576-624 17-63 (67)
80 cd04938 TGS_Obg-like TGS_Obg-l 73.1 2.8 6.1E-05 37.3 2.5 42 576-623 28-76 (76)
81 cd00165 S4 S4/Hsp/ tRNA synthe 71.3 3.8 8.2E-05 33.3 2.8 26 803-828 24-50 (70)
82 COG1977 MoaD Molybdopterin con 68.1 4.6 0.0001 36.4 2.8 23 807-829 56-78 (84)
83 PF00498 FHA: FHA domain; Int 67.6 3.7 8E-05 34.5 2.0 24 805-828 42-67 (68)
84 PRK08053 sulfur carrier protei 64.4 6.3 0.00014 33.8 2.8 22 601-624 37-62 (66)
85 PRK08364 sulfur carrier protei 63.5 6.5 0.00014 34.2 2.8 22 601-624 45-66 (70)
86 PRK07696 sulfur carrier protei 62.3 6.9 0.00015 33.9 2.7 22 601-624 38-63 (67)
87 PRK10119 putative hydrolase; P 60.8 18 0.00038 39.0 6.0 59 101-162 4-62 (231)
88 COG0012 Predicted GTPase, prob 60.1 3.1 6.8E-05 47.4 0.2 46 783-828 320-368 (372)
89 PRK03826 5'-nucleotidase; Prov 59.1 20 0.00043 37.5 5.9 40 124-163 27-72 (195)
90 TIGR00277 HDIG uncharacterized 58.8 8.6 0.00019 32.4 2.7 39 124-162 3-41 (80)
91 PRK05327 rpsD 30S ribosomal pr 56.5 9.5 0.00021 40.1 3.1 27 803-829 116-143 (203)
92 PRK06488 sulfur carrier protei 56.4 12 0.00025 31.9 3.0 22 601-624 36-61 (65)
93 TIGR01683 thiS thiamine biosyn 53.7 13 0.00027 31.6 2.9 22 601-624 35-60 (64)
94 cd00077 HDc Metal dependent ph 52.1 6.4 0.00014 35.5 0.9 40 125-164 2-44 (145)
95 PRK00413 thrS threonyl-tRNA sy 51.9 11 0.00025 45.5 3.1 28 803-830 34-61 (638)
96 PF14451 Ub-Mut7C: Mut7-C ubiq 51.8 15 0.00033 33.2 3.2 30 588-623 46-75 (81)
97 PF06071 YchF-GTPase_C: Protei 51.0 11 0.00023 34.7 2.0 46 784-829 14-82 (84)
98 PF13510 Fer2_4: 2Fe-2S iron-s 50.9 31 0.00068 30.9 5.0 55 774-828 2-79 (82)
99 TIGR00488 putative HD superfam 50.0 11 0.00024 37.5 2.2 39 124-162 7-45 (158)
100 TIGR01017 rpsD_bact ribosomal 49.7 15 0.00032 38.6 3.2 27 803-829 113-140 (200)
101 CHL00113 rps4 ribosomal protei 47.3 16 0.00034 38.6 2.9 28 802-829 111-139 (201)
102 TIGR00295 conserved hypothetic 46.0 16 0.00035 36.8 2.7 39 124-162 12-55 (164)
103 COG4341 Predicted HD phosphohy 45.1 20 0.00043 36.8 3.1 35 121-160 24-60 (186)
104 COG0522 RpsD Ribosomal protein 44.9 23 0.00049 37.5 3.7 28 802-829 116-144 (205)
105 TIGR03069 PS_II_S4 photosystem 43.5 21 0.00046 38.8 3.3 28 802-829 205-233 (257)
106 COG1713 Predicted HD superfami 42.1 15 0.00032 38.4 1.8 43 123-165 15-57 (187)
107 PLN00051 RNA-binding S4 domain 41.6 22 0.00048 39.0 3.1 28 802-829 213-241 (267)
108 PRK11507 ribosome-associated p 41.2 27 0.00058 31.1 3.0 27 802-828 34-61 (70)
109 PF13023 HD_3: HD domain; PDB: 40.1 17 0.00036 36.8 1.7 40 123-163 20-62 (165)
110 PF12917 HD_2: HD containing h 39.4 30 0.00066 36.8 3.6 110 124-243 28-143 (215)
111 PRK06944 sulfur carrier protei 39.2 31 0.00068 29.0 3.0 22 601-624 36-61 (65)
112 cd04867 TGS_YchF_C TGS_YchF_C: 38.9 29 0.00063 31.9 2.9 43 783-829 13-82 (83)
113 PRK06083 sulfur carrier protei 37.7 16 0.00036 33.3 1.1 22 601-624 55-80 (84)
114 COG3383 Uncharacterized anaero 37.3 59 0.0013 40.6 5.9 56 773-828 3-76 (978)
115 cd01809 Scythe_N Ubiquitin-lik 37.2 89 0.0019 26.2 5.6 56 774-829 2-70 (72)
116 COG1977 MoaD Molybdopterin con 37.0 35 0.00076 30.8 3.2 30 588-624 51-80 (84)
117 PRK07152 nadD putative nicotin 36.4 20 0.00044 40.2 1.9 40 124-163 195-234 (342)
118 cd00754 MoaD Ubiquitin domain 36.1 28 0.00062 30.1 2.4 22 601-624 55-76 (80)
119 PRK00106 hypothetical protein; 35.9 26 0.00057 42.1 2.7 42 122-163 347-388 (535)
120 COG1078 HD superfamily phospho 34.1 23 0.00051 41.2 1.9 35 126-160 52-95 (421)
121 PRK12705 hypothetical protein; 33.7 33 0.00071 41.0 3.1 42 122-163 320-361 (508)
122 PRK11025 23S rRNA pseudouridyl 32.3 34 0.00074 38.1 2.8 25 804-828 44-68 (317)
123 PRK12704 phosphodiesterase; Pr 31.4 37 0.0008 40.7 3.0 40 123-162 333-372 (520)
124 COG2302 Uncharacterized conser 30.7 39 0.00084 36.9 2.7 28 802-829 202-230 (257)
125 PTZ00305 NADH:ubiquinone oxido 30.5 80 0.0017 35.4 5.1 50 779-828 72-142 (297)
126 COG0564 RluA Pseudouridylate s 30.1 41 0.0009 37.2 3.0 25 805-829 37-61 (289)
127 COG1896 Predicted hydrolases o 29.6 91 0.002 32.6 5.2 118 107-242 12-141 (193)
128 PRK10348 ribosome-associated h 28.9 57 0.0012 32.4 3.3 26 804-829 33-58 (133)
129 TIGR03319 YmdA_YtgF conserved 28.5 42 0.0009 40.2 2.8 40 123-162 327-366 (514)
130 PF02597 ThiS: ThiS family; I 28.2 50 0.0011 28.3 2.5 22 601-624 49-73 (77)
131 PF04753 Corona_NS2: Coronavir 27.5 31 0.00068 32.4 1.2 12 278-289 20-31 (109)
132 PRK11840 bifunctional sulfur c 26.8 48 0.001 37.5 2.7 24 791-814 259-282 (326)
133 KOG3148 Glucosamine-6-phosphat 26.7 34 0.00073 35.9 1.4 22 775-796 24-48 (273)
134 TIGR00384 dhsB succinate dehyd 26.0 71 0.0015 33.7 3.7 40 785-824 19-77 (220)
135 PRK01286 deoxyguanosinetriphos 25.4 45 0.00097 37.9 2.2 60 102-161 34-98 (336)
136 PLN02799 Molybdopterin synthas 25.3 57 0.0012 28.8 2.5 22 601-624 57-78 (82)
137 PF13275 S4_2: S4 domain; PDB: 24.6 40 0.00086 29.5 1.2 23 806-828 34-57 (65)
138 COG2914 Uncharacterized protei 24.1 1.1E+02 0.0023 29.1 3.9 22 602-625 56-77 (99)
139 cd01805 RAD23_N Ubiquitin-like 23.7 2.6E+02 0.0056 24.0 6.2 56 774-829 2-72 (77)
140 PRK03007 deoxyguanosinetriphos 23.4 78 0.0017 37.1 3.7 62 101-162 41-107 (428)
141 PRK11180 rluD 23S rRNA pseudou 23.1 66 0.0014 35.9 3.0 27 803-829 41-68 (325)
142 cd00060 FHA Forkhead associate 22.2 90 0.0019 27.5 3.1 24 806-829 67-92 (102)
143 COG2501 S4-like RNA binding pr 22.1 79 0.0017 28.5 2.6 26 803-828 35-61 (73)
144 COG3400 Uncharacterized protei 21.5 97 0.0021 35.6 3.8 64 762-829 132-206 (471)
145 PTZ00258 GTP-binding protein; 21.4 52 0.0011 38.1 1.8 49 576-624 320-387 (390)
146 PF12791 RsgI_N: Anti-sigma fa 21.0 84 0.0018 25.9 2.5 24 769-792 2-25 (56)
147 COG1578 Uncharacterized conser 20.9 4.9E+02 0.011 29.1 8.8 52 235-289 11-62 (285)
148 PF05153 DUF706: Family of unk 20.8 1.3E+02 0.0028 32.9 4.4 52 104-160 41-93 (253)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.2e-127 Score=1109.30 Aligned_cols=464 Identities=39% Similarity=0.614 Sum_probs=415.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHh
Q 003318 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (830)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~ 173 (830)
..|.......+.+|+.||.++|.||+|+||+|||.||++||.||+++++ |.++++||||||++|||++|.++|++
T Consensus 17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~ 91 (701)
T COG0317 17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE 91 (701)
T ss_pred HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence 4444444555999999999999999999999999999999999999975 68999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHH
Q 003318 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (830)
Q Consensus 174 ~FG~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq 253 (830)
.||++|++||+||||+..+..+. .....|+||+|||++||++|+||++|||||||||||||..++++||
T Consensus 92 ~FG~eVa~LV~GvTkl~~i~~~~-----------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 92 IFGKEVAKLVEGVTKLKKIGQLS-----------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHCHHHHHHHhhHHHhhhhhccC-----------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999874211 1223489999999999999999999999999999999999889999
Q ss_pred HHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccch
Q 003318 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 333 (830)
Q Consensus 254 ~~iA~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 333 (830)
+++|+||++||||||||||||++|||||||||+||+ |+.|+
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~--------------P~~Y~------------------------- 201 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLH--------------PDQYK------------------------- 201 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhC--------------hHHHH-------------------------
Confidence 999999999999999999999999999999999999 44444
Q ss_pred hhhhhhHHHHHhhhcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEE
Q 003318 334 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 413 (830)
Q Consensus 334 ~~~~~~~k~ll~~v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~ 413 (830)
.|+.++. ++|.+|+.|++++. ..+++.|.+ .|++++
T Consensus 202 -----~I~~~l~--------e~r~~re~~i~~~~----------------------~~l~~~L~~---------~gi~a~ 237 (701)
T COG0317 202 -----RIAKLLD--------EKRLEREQYIENVV----------------------SELREELKA---------AGIKAE 237 (701)
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHH----------------------HHHHHHHHH---------cCCeEE
Confidence 3445665 47899999999886 245666666 389999
Q ss_pred EEEeecChhHHHHHHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCC
Q 003318 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 493 (830)
Q Consensus 414 I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGY 493 (830)
|+||+||+||||+||++|+..|++|+|++||||||++ +.|||++||+||.+|+|+|||||||||+||+|||
T Consensus 238 v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgY 308 (701)
T COG0317 238 VSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGY 308 (701)
T ss_pred EEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCccccccccCCCCCC
Confidence 9999999999999999999999999999999999996 8899999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCccccccccccchHHHhccCCCCCCCCCccccc-----
Q 003318 494 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTD----- 568 (830)
Q Consensus 494 qSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~d----- 568 (830)
|||||||.||.|.++||||||+.||..||+|+||||.||+++......-.+-++|.+|++...++.||++++|.|
T Consensus 309 QSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~dlf~d~ 388 (701)
T COG0317 309 QSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQLKSDLFPDR 388 (701)
T ss_pred ceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHHhhcccCce
Confidence 999999999999999999999999999999999999999987321110012255688888888889999999999
Q ss_pred --ccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--CcchhHHHH
Q 003318 569 --LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAY 634 (830)
Q Consensus 569 --vfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~--~p~~dWL~~ 634 (830)
+|||||+ ||.|+|++|| |||+|+|||| ||| +|||+|+|+|||+|||+|++ +|++|||+|
T Consensus 389 VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~ 461 (701)
T COG0317 389 VYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAGPSRDWLNF 461 (701)
T ss_pred EEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCCCCHHHHHH
Confidence 4799994 8999996665 9999999999 999 99999999999999999998 599999999
Q ss_pred HHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccccCC
Q 003318 635 ARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP 680 (830)
Q Consensus 635 v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~~~ 680 (830)
|+|+||++| +-|| ...+.+.++++ |+--+...|+++-.
T Consensus 462 v~t~kAR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~ 500 (701)
T COG0317 462 VVTSRARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL 500 (701)
T ss_pred HhhHHHHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence 999999999 7777 89999999999 99999999998765
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=4e-122 Score=1077.67 Aligned_cols=464 Identities=30% Similarity=0.494 Sum_probs=402.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHh
Q 003318 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (830)
Q Consensus 94 ~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~ 173 (830)
..|...+.+.|++|+.||.++|.| |+||||||+||++||.||+++++ |.++|+||||||+||||++|.++|++
T Consensus 25 ~~~~~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~-----D~~ti~AaLLHD~vedt~~t~e~i~~ 97 (743)
T PRK10872 25 GITSQQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSM-----DIDTLRAALLFPLADANVVSEDVLRE 97 (743)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCC-----CHHHHHHHHhhhhHhcCCCCHHHHHH
Confidence 344333457899999999999999 99999999999999999999975 78999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHH
Q 003318 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (830)
Q Consensus 174 ~FG~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq 253 (830)
.||++||.||+||||++.+....+.+ .......|+||||||||||++|+||+||||||||||||||..+|++||
T Consensus 98 ~FG~~Va~lVdgvtKl~~i~~~~~~~------~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq 171 (743)
T PRK10872 98 SVGKSIVNLIHGVRDMDAIRQLKATH------NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDER 171 (743)
T ss_pred HHCHHHHHHHHHHHHHHHhhhhhccc------ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999875421000 011234699999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccch
Q 003318 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 333 (830)
Q Consensus 254 ~~iA~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 333 (830)
+++|+|||+||||||||||||+||||||||||+||+ |+.|+
T Consensus 172 ~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~--------------P~~Y~------------------------- 212 (743)
T PRK10872 172 VLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLH--------------PDEYK------------------------- 212 (743)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC--------------HHHHH-------------------------
Confidence 999999999999999999999999999999999999 33333
Q ss_pred hhhhhhHHHHHhhhcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEE
Q 003318 334 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 413 (830)
Q Consensus 334 ~~~~~~~k~ll~~v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~ 413 (830)
.|+.++. ++|.+|+.|++++. ..+++.|++. |++++
T Consensus 213 -----~i~~~l~--------~~~~~r~~~i~~~~----------------------~~l~~~L~~~---------~i~~~ 248 (743)
T PRK10872 213 -----RIAKLLH--------ERRIDREHYIEEFV----------------------GHLRAEMKAE---------GVKAE 248 (743)
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHH----------------------HHHHHHHHhc---------CCceE
Confidence 4445554 46889999999876 2455666653 88899
Q ss_pred EEEeecChhHHHHHHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCC
Q 003318 414 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 493 (830)
Q Consensus 414 I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGY 493 (830)
|+||+||+||||+||++|+.+|++|+|+.|+||||++ +.+||++||+||++|+|+|++|||||++||+|||
T Consensus 249 v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~---------~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGY 319 (743)
T PRK10872 249 VYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER---------LQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGY 319 (743)
T ss_pred EEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC---------HHHHHHHHHHHHhhccCCcchhhhcccCCCCCCc
Confidence 9999999999999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCccccccccc------cchHHHhccCCCCCCCCCcccc
Q 003318 494 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDHNPLDT 567 (830)
Q Consensus 494 qSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~~~~~~ 567 (830)
|||||+|.+|+|.++||||||..||.+||+|+||||+||++...++....++ ++|.+|++...++.||++.+|.
T Consensus 320 qSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d~~ef~e~~k~ 399 (743)
T PRK10872 320 QSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRS 399 (743)
T ss_pred ceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998643210111122 3446777666667899999987
Q ss_pred c-------ccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC--cc
Q 003318 568 D-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF--QI 628 (830)
Q Consensus 568 d-------vfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~--p~ 628 (830)
| ||||+|+ ||.|+|++|| +|++|+|||| ||+ +||++|+|++||+|||+|+++ |+
T Consensus 400 dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv-----ng~--~v~l~~~L~~GD~VeIits~~~~Ps 472 (743)
T PRK10872 400 QVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI-----GGR--IVPFTYQLQMGDQIEIITQKQPNPS 472 (743)
T ss_pred HhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE-----CCE--ECCCCcCCCCCCEEEEEeCCCCCCC
Confidence 7 5799995 7999997665 9999999999 999 999999999999999999984 99
Q ss_pred hhHHH----HHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003318 629 KCWEA----YARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 677 (830)
Q Consensus 629 ~dWL~----~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 677 (830)
+|||+ ||+|+||+++ +-|| ++.+.+.+++. |+-.+...|.+
T Consensus 473 ~dWL~~~lg~v~T~rAR~kIr~~~--k~~~~~~~i~~------Gr~lL~k~l~~ 518 (743)
T PRK10872 473 RDWLNPNLGYVTTSRGRSKIHAWF--RKQDRDKNILA------GRQILDDELEH 518 (743)
T ss_pred hhHhccccCeeeCHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHh
Confidence 99999 9999999999 6666 66777777776 77666666655
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=3e-120 Score=1063.91 Aligned_cols=455 Identities=34% Similarity=0.522 Sum_probs=402.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhcHHH
Q 003318 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179 (830)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~~V 179 (830)
+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++ |.++++||||||++|||++|.++|++.||++|
T Consensus 19 ~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~ti~AaLLHDvvEDt~~t~e~i~~~FG~~V 93 (702)
T PRK11092 19 QIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRL-----DYETLMAALLHDVIEDTPATYQDMEQLFGKSV 93 (702)
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHhcccchhhhCCCCHHHHHHHHCHHH
Confidence 4478999999999999999999999999999999999999864 78999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHHHHHHh
Q 003318 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 259 (830)
Q Consensus 180 A~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~E 259 (830)
+.||+||||++.++.. .....|+|++||||++|++|+||++|||||||||||||..+|+++|+++|+|
T Consensus 94 a~lV~gvTk~~~l~~~------------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~E 161 (702)
T PRK11092 94 AELVEGVSKLDKLKFR------------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARE 161 (702)
T ss_pred HHHHHHHHhhcccccc------------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHH
Confidence 9999999999876431 1123589999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccchhhhhhh
Q 003318 260 TLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 339 (830)
Q Consensus 260 Tl~IYaPLA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 339 (830)
|++||||||||||||+||||||||||+||+ |+.|+ .
T Consensus 162 Tl~iyaPlA~rlGi~~ik~eLedL~f~~l~--------------P~~y~------------------------------~ 197 (702)
T PRK11092 162 TLEIYSPLAHRLGIHHIKTELEELGFEALY--------------PNRYR------------------------------V 197 (702)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHhhC--------------HHHHH------------------------------H
Confidence 999999999999999999999999999999 33333 3
Q ss_pred HHHHHhhhcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeec
Q 003318 340 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 419 (830)
Q Consensus 340 ~k~ll~~v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K 419 (830)
|+.++. +.|.+|+.|++++. ..+++.|++. |++++|+||.|
T Consensus 198 i~~~~~--------~~~~~r~~~i~~~~----------------------~~l~~~l~~~---------~i~~~i~~R~K 238 (702)
T PRK11092 198 IKEVVK--------AARGNRKEMIQKIL----------------------SEIEGRLQEA---------GIPCRVSGREK 238 (702)
T ss_pred HHHHHH--------HHHHHHHHHHHHHH----------------------HHHHHHHHHc---------CCcEEEEeccC
Confidence 445554 46788999999876 2456667663 88899999999
Q ss_pred ChhHHHHHHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEEE
Q 003318 420 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 499 (830)
Q Consensus 420 ~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGYqSLHt~ 499 (830)
|+||||+||++|+.+|++|+|++|+||||++ +.+||++||+||++|+|+|++|||||++||+||||||||+
T Consensus 239 ~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~---------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~ 309 (702)
T PRK11092 239 HLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD---------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTS 309 (702)
T ss_pred CHHHHHHHHHHcCCChhHhccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEE
Confidence 9999999999999999999999999999986 8899999999999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCcccccc-c---cccchHHHhccCCCCCCCCCccccc-------
Q 003318 500 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS-S---MDESDIEASSSLSKDTDDHNPLDTD------- 568 (830)
Q Consensus 500 V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~-~---~~~~l~~~~~~~~~~~e~~~~~~~d------- 568 (830)
|.+|+|.++||||||..||.+||+|+||||+||++.....+.. . +-+++.+|++...++.||++.++.|
T Consensus 310 v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~~~ef~~~~~~dl~~d~v~ 389 (702)
T PRK11092 310 MIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIY 389 (702)
T ss_pred EECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhhhccceEE
Confidence 9999999999999999999999999999999998643211100 1 1133566666666678999999877
Q ss_pred ccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--CcchhHHHHHH
Q 003318 569 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYAR 636 (830)
Q Consensus 569 vfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~--~p~~dWL~~v~ 636 (830)
||||+|+ ||.|+|++|| |||||+|||| ||+ +|||+|+|+|||+|||+|++ .|++|||+||+
T Consensus 390 VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkV-----Ng~--~vpL~~~L~~Gd~VeIiT~~~~~P~~dWL~~v~ 462 (702)
T PRK11092 390 VFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARV-----DRQ--PYPLSQPLTSGQTVEIITAPGARPNAAWLNFVV 462 (702)
T ss_pred EECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCChHHHHHhh
Confidence 5799995 7999997665 9999999999 999 99999999999999999997 49999999999
Q ss_pred HhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeeccccccc
Q 003318 637 LYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 678 (830)
Q Consensus 637 t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~ 678 (830)
|+||+++ +-|| ++.+.+.+++. |+--+...|.++
T Consensus 463 T~rAr~kIr~~~--r~~~~~~~i~~------Gr~lL~~~l~~~ 497 (702)
T PRK11092 463 SSKARAKIRQLL--KNLKRDDSVSL------GRRLLNHALGGS 497 (702)
T ss_pred hHHHHHHHHHHH--HhhhHHHHHHH------HHHHHHHHHHhc
Confidence 9999999 6666 77778888777 887777777665
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=5.2e-113 Score=1004.36 Aligned_cols=447 Identities=37% Similarity=0.572 Sum_probs=390.6
Q ss_pred HHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhcHHHHHHHHHh
Q 003318 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (830)
Q Consensus 107 A~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gV 186 (830)
|+.||.++|.||+|++|+||+.||++||.+|+++++ |.++++||||||+||||++|.++|++.||++|+.||++|
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~-----D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~v 75 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGM-----DEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGV 75 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCC-----CHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHH
Confidence 688999999999999999999999999999998864 689999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHHHHHHhhHHHHHH
Q 003318 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (830)
Q Consensus 187 TKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ETl~IYaP 266 (830)
||++.++... ....|+|++||||++|+.|+||++|||||||||||+|..+|+++|+++|+||++||||
T Consensus 76 Tk~~~~~~~~------------~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaP 143 (683)
T TIGR00691 76 TKITKLKKKS------------RQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAP 143 (683)
T ss_pred HHhcccccch------------hhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 9998764311 1235899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccchhhhhhhHHHHHhh
Q 003318 267 LASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEA 346 (830)
Q Consensus 267 LA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~ll~~ 346 (830)
||||||||+||||||||||+||+ |+.|. .|+.+++
T Consensus 144 lA~rLG~~~ik~eLedl~f~~l~--------------p~~y~------------------------------~i~~~l~- 178 (683)
T TIGR00691 144 LAHRLGMSSIKTELEDLSFKYLY--------------PKEYE------------------------------NIKSLVN- 178 (683)
T ss_pred HHHHhChHHHHHHHHHHHHHhcC--------------HHHHH------------------------------HHHHHHH-
Confidence 99999999999999999999999 33333 3445554
Q ss_pred hcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHH
Q 003318 347 VVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFS 426 (830)
Q Consensus 347 v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~ 426 (830)
..|.+|+.|++.+. +.+++.|.+. |++++|+||+|++||||+
T Consensus 179 -------~~~~~~~~~~~~~~----------------------~~l~~~l~~~---------~i~~~i~~R~K~~~Si~~ 220 (683)
T TIGR00691 179 -------EQKVNRENKLEKFK----------------------SELEKRLEDS---------GIEAELEGRSKHLYSIYQ 220 (683)
T ss_pred -------HHHHHHHHHHHHHH----------------------HHHHHHHHhc---------CCceEEEeeeCCHHHHHH
Confidence 36788999999876 2345566653 788999999999999999
Q ss_pred HHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEEEEEcCCCc
Q 003318 427 KMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 506 (830)
Q Consensus 427 Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGYqSLHt~V~~p~g~ 506 (830)
||++|+.+|++|+|++|+||||++ +.+||+++|+||++|+|+|++|||||++||+||||||||+|.+|+|.
T Consensus 221 Km~~k~~~~~~i~Di~~~RIi~~~---------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~ 291 (683)
T TIGR00691 221 KMTRKGQNFDEIHDLLAIRIIVKS---------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGL 291 (683)
T ss_pred HHHhcCCCHHHcccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCC
Confidence 999999999999999999999985 88999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecchhHHHHHhhhhhhhcccccCCcccccc---ccccchHHHhccCCCCCCCCCccccc-------ccccccc-
Q 003318 507 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTD-------LFQKYSS- 575 (830)
Q Consensus 507 ~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~---~~~~~l~~~~~~~~~~~e~~~~~~~d-------vfTPkg~- 575 (830)
++||||||..||.|||+|+||||+||++........ .+-+++.+|+....++.+|++.++.| ||||+|+
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~k~~l~~~~i~vfTPkG~~ 371 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNPQKEALIDDMRWLNYLVEWQQESANFFEFIENLKSDLFNEEIYVFTPKGDV 371 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhhcccchhHHHHhhHHhccCceEEECCCCeE
Confidence 999999999999999999999999998643211111 11134566766666678999988877 5899995
Q ss_pred --ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--CcchhHHHHHHHhHhhhh-
Q 003318 576 --LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYARLYKKASD- 643 (830)
Q Consensus 576 --Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~--~p~~dWL~~v~t~k~~~~- 643 (830)
||.|+|++|| +|++|+|||| ||+ +||++++|++||+|||+|++ +|++|||+||+|+||+++
T Consensus 372 ~~lp~gst~~DfAy~ih~~~g~~~~~a~v-----ng~--~v~l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T~rAR~kI 444 (683)
T TIGR00691 372 VELPSGSTPVDFAYAVHTDVGNKCTGAKV-----NGK--IVPLDKELENGDVVEIITGKNSNPSVIWLNFVVTSKARNKI 444 (683)
T ss_pred EEcCCCCCHHHHHHHHhHHhHhceeEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHH
Confidence 7999997665 9999999999 999 99999999999999999998 599999999999999999
Q ss_pred hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003318 644 EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 677 (830)
Q Consensus 644 ~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 677 (830)
+-|| +..+.+.+++. |+--+...|.+
T Consensus 445 r~~~--k~~~r~~~i~~------G~~lLek~l~~ 470 (683)
T TIGR00691 445 RQWL--KKLRREVAISE------GKNILEKELGR 470 (683)
T ss_pred HHHH--HHHHHHHHHHH------HHHHHHHHHHH
Confidence 5555 56666666666 66555555544
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-73 Score=609.94 Aligned_cols=329 Identities=43% Similarity=0.649 Sum_probs=283.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccccC-cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhc
Q 003318 98 IFNDEQVQKAIAFAKRAHHGQFRKTG-DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (830)
Q Consensus 98 ~~~~~~l~kA~~fA~~aH~gQ~RksG-ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (830)
.++..++-+|+.+|+.+|.+|+|+++ +||+.||+.+|.|||++++ |..+++||+||||||||..+.++|++.||
T Consensus 71 t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~-----ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG 145 (543)
T KOG1157|consen 71 TFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGA-----DSTVVVAAILHDVVDDTFMSYEEILRHFG 145 (543)
T ss_pred cCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccCCHHHHHHHhC
Confidence 56678999999999999999999965 5999999999999999875 67899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHHHH
Q 003318 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAV 256 (830)
Q Consensus 177 ~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~i 256 (830)
..||.||++||+++.++...|. + ..|++++| |+.+++. .|++||||||+|||||+|.++||-++++.
T Consensus 146 ~gVa~LV~EvtddKnL~K~eRk----~-------l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~ 212 (543)
T KOG1157|consen 146 TGVADLVEEVTDDKNLSKLERK----N-------LTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRF 212 (543)
T ss_pred ccHHHHHHHHhcccchhHHHHH----H-------HHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHH
Confidence 9999999999999998765432 1 25788888 6777864 99999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccchhhh
Q 003318 257 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEH 336 (830)
Q Consensus 257 A~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 336 (830)
++||+.||||||||+|++..+.+||||||+||+ |..|-
T Consensus 213 r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~--------------p~~~~---------------------------- 250 (543)
T KOG1157|consen 213 RKETLFIWAPLANRLGIGTNKVLLENLDFKHLF--------------PCQHI---------------------------- 250 (543)
T ss_pred HHHHHHHhhHHHHHhcccchHHHHhhhhHHHhC--------------chhHH----------------------------
Confidence 999999999999999999999999999999999 22221
Q ss_pred hhhHHHHHhhhcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCce-EEEE
Q 003318 337 VLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGME-VTLS 415 (830)
Q Consensus 337 ~~~~k~ll~~v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~-~~I~ 415 (830)
+|..+|+.. || +..|... ...+++.|..+ |+. +-|+
T Consensus 251 --~m~s~l~~~--~~--------~~mi~~~----------------------~~~l~~~l~~a---------~i~~~~i~ 287 (543)
T KOG1157|consen 251 --EMSSMLEDS--FD--------EAMITSA----------------------IEKLEQALKKA---------GISYHVIK 287 (543)
T ss_pred --HHHHHHhcc--cc--------hHHHHHH----------------------HHHHHHHHHhc---------cceeEEEe
Confidence 333444421 21 1112211 12334445443 443 5699
Q ss_pred EeecChhHHHHHHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCce
Q 003318 416 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQS 495 (830)
Q Consensus 416 gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGYqS 495 (830)
||.|++||||+||.|++...++|+|+.|+|+||++ ..+||+++|+||++|..+|++.||||+.||.|||||
T Consensus 288 gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~---------~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~s 358 (543)
T KOG1157|consen 288 GRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN---------ESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQS 358 (543)
T ss_pred cchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC---------chHHHHHHHHHHHHHHhCcchhhhhhcCccccccce
Confidence 99999999999999999999999999999999986 469999999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCcc
Q 003318 496 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 538 (830)
Q Consensus 496 LHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~ 538 (830)
|||+|.+..-+|+||||||..||..||+|.||||+||++...+
T Consensus 359 lh~~v~~d~~~plevqirt~em~~~a~~g~aah~~yk~g~~~~ 401 (543)
T KOG1157|consen 359 LHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKTSS 401 (543)
T ss_pred eeeEEecCCcceeEEEEeeeccccccccchhhHhhhhcCCCCH
Confidence 9999998555799999999999999999999999999985543
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=7.9e-39 Score=313.08 Aligned_cols=153 Identities=48% Similarity=0.753 Sum_probs=97.7
Q ss_pred HHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhcHHHHHHHHHh
Q 003318 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (830)
Q Consensus 107 A~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gV 186 (830)
|+.||.++|.||++++|+||+.||++||.+|++++. |.++++||||||++|||..+ ++|++.||++|+++|.++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~-----d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~l 74 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGL-----DEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDAL 74 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS--------HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHH
Confidence 789999999999999999999999999999998864 68999999999999999555 999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHHHHHHhhHHHHHH
Q 003318 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (830)
Q Consensus 187 TKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ETl~IYaP 266 (830)
|+++++... ++. .....+.+++|+||++|++|+||++||||||+||||++...|+++++++|+||++||+|
T Consensus 75 t~~~~~~~~-~~~--------~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~ap 145 (153)
T PF13328_consen 75 TKIKKLSKK-PWE--------ERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAP 145 (153)
T ss_dssp ---TTS-HH------------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT--------------
T ss_pred Hhccccccc-cch--------hhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhcccccccc
Confidence 999887653 111 12356889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhChH
Q 003318 267 LASRLGLW 274 (830)
Q Consensus 267 LA~RLGi~ 274 (830)
||||||||
T Consensus 146 LA~rLGiw 153 (153)
T PF13328_consen 146 LAHRLGIW 153 (153)
T ss_dssp --------
T ss_pred ccccccCC
Confidence 99999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.94 E-value=4e-27 Score=223.87 Aligned_cols=119 Identities=42% Similarity=0.703 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC---CcccceeEEEEEEcCCCCCCCCccHHHHHHH
Q 003318 390 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI---HKVYDARALRVVVGDKNGTLHGPAIQCCYSL 466 (830)
Q Consensus 390 ~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~---~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~v 466 (830)
..|++.|++.... +..+.|++|+|+++|+++||.+++.+. ++|+|++|+||||+. ..|||.+
T Consensus 5 ~~l~~~L~~~~~~------~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~---------~~d~~~v 69 (129)
T cd05399 5 EEIADLLRDAGII------GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF---------VDDCYRV 69 (129)
T ss_pred HHHHHHHHHcCCC------CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC---------HHHHHHH
Confidence 3566677764210 115789999999999999999998777 999999999999985 7899999
Q ss_pred HHHHHhcCCcccccccccccCCCCCCCceeEEEEEcCC---CcEEEEEEecchhHHHHHh
Q 003318 467 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD---GSALEVQIRTQKMHEYAEH 523 (830)
Q Consensus 467 lgiIh~~~~pi~~r~kDYIa~PK~nGYqSLHt~V~~p~---g~~vEIQIRT~~Mh~~AE~ 523 (830)
++.|++.|+++|++++|||+.||+|||||+|++|..++ |.++||||||..||.|||.
T Consensus 70 ~~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 70 LDLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999887 8999999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.94 E-value=9.8e-28 Score=223.07 Aligned_cols=108 Identities=37% Similarity=0.548 Sum_probs=93.6
Q ss_pred EeecChhHHHHHHHhcCC---CCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCC
Q 003318 416 SRLKSLYSIFSKMRRKDV---GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 492 (830)
Q Consensus 416 gR~K~~ySI~~Km~rk~~---~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nG 492 (830)
+|+|+++|+++|+.|++. ++.+|+|++|+||||.. ..|||.++++|++.|.+.+.+++|||+.||.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~---------~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~G 71 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYF---------PDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNG 71 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESS---------CCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEee---------HHHHHHHHHHHHHcCCcccccccccccccccCC
Confidence 699999999999999874 78999999999999986 579999999999999999999999999999999
Q ss_pred CceeEEEE---EcCCCcEEEEEEecchhHHHHHhhhhhhhccccc
Q 003318 493 YQSLHTAV---QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 534 (830)
Q Consensus 493 YqSLHt~V---~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 534 (830)
|||+|++| ..+.|.++||||||.+||.|||..| ||.||.+
T Consensus 72 Yrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~~ 114 (115)
T PF04607_consen 72 YRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKSS 114 (115)
T ss_dssp --EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHCT
T ss_pred cEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCCC
Confidence 99999999 3457889999999999999999555 8999964
No 9
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=99.93 E-value=7.2e-27 Score=272.22 Aligned_cols=91 Identities=30% Similarity=0.446 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003318 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 806 (830)
Q Consensus 731 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~-- 806 (830)
.+++.|||+++|||++..|+.|| ++++|.|||+|+||||||||+|+.||.||||+||||+|| +|++|
T Consensus 354 ~~~~~Wlr~lle~q~~~~d~~ef---------~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~g 424 (701)
T COG0317 354 EEKIAWLRQLLEWQEESADSGEF---------LEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIG 424 (701)
T ss_pred hHHHHHHHHHHHHHHhcCCcHHH---------HHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeE
Confidence 67999999999999999876554 799999999999999999999999999999999999999 99988
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003318 807 VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 807 ~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|||||++|||+|+|+|||+|||+|
T Consensus 425 AkVnG~ivpl~~~Lk~Gd~VEIit 448 (701)
T COG0317 425 AKVNGRIVPLTTKLQTGDQVEIIT 448 (701)
T ss_pred EEECCEEeccceecCCCCEEEEEe
Confidence 699999999999999999999997
No 10
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=230.61 Aligned_cols=132 Identities=32% Similarity=0.407 Sum_probs=111.7
Q ss_pred HHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC------CcccceeEEEEEEcCCCCCCCCccHHHHHHHH
Q 003318 394 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 467 (830)
Q Consensus 394 ~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~------~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vl 467 (830)
..+..++.....+.|.. .|++|+|++.||..|++|||.++ ++|+|++|+||+|. +++|.|.+.
T Consensus 37 ~~~~~~~~~~~~~~pie--~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~---------F~~DI~~v~ 105 (231)
T COG2357 37 KILRDEYEKLHDYNPIE--HVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQ---------FVDDIYRVV 105 (231)
T ss_pred HHHHHHHHhhcCCCchH--HHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeee---------hHhhHHHHH
Confidence 34455555455666665 48999999999999999999543 58999999999998 489999999
Q ss_pred HHHHhcCCcccccccccccCCCCCCCceeEEEEEcCC-------CcEEEEEEecchhHHHHHhhhhhhhcccccCCcc
Q 003318 468 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD-------GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 538 (830)
Q Consensus 468 giIh~~~~pi~~r~kDYIa~PK~nGYqSLHt~V~~p~-------g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~ 538 (830)
.++.+...-.....||||.+||+|||||+|++|..|- +..+||||||..||.||++.|. .+||.++..|
T Consensus 106 ~~l~~~~d~~iv~~kDyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~--l~YKy~~~~P 181 (231)
T COG2357 106 DLLKSRKDFTIVEEKDYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHK--LRYKYGGEVP 181 (231)
T ss_pred HHHhcccCccchhHHHHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHH--hhccccccCh
Confidence 9999876655568999999999999999999999773 3689999999999999999995 7899877666
No 11
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=99.92 E-value=9.9e-26 Score=266.37 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003318 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 806 (830)
Q Consensus 731 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~-- 806 (830)
..+++|||+|++||++..++.+| ++.+|.|||+++||||||+|+|+.||.||||+||||+|| +|++|
T Consensus 353 ~~~~~wlr~ll~~~~~~~~~~ef---------~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~g 423 (702)
T PRK11092 353 IRAQRWMQSLLELQQSAGSSFEF---------IESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVG 423 (702)
T ss_pred HHHHHHHHHHHHHHhhcCChHHH---------HHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEE
Confidence 34588999999999987766555 689999999999999999999999999999999999999 88887
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003318 807 VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 807 ~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|||||++|||+|+|+|||+|||+|
T Consensus 424 AkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 424 ARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 699999999999999999999997
No 12
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.89 E-value=6e-24 Score=251.12 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce-
Q 003318 730 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL- 806 (830)
Q Consensus 730 ~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~- 806 (830)
++.++.|||+|+|||++..|+.+| ++++|.|||+++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 370 ~~~~~~wLr~lle~~~~~~d~~ef---------~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~ 440 (743)
T PRK10872 370 HEDRIAWLRKLIAWQEEMADSGEM---------LDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCI 440 (743)
T ss_pred hHHHHHHHHHHHHHHhccCCHHHH---------HHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhce
Confidence 477899999999999987776665 689999999999999999999999999999999999999 77766
Q ss_pred -EEECCEEeCCCccCCCCCEEEEeC
Q 003318 807 -VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 807 -~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|||||++|||+|+|+|||+|||+|
T Consensus 441 gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 441 GAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred EEEECCEECCCCcCCCCCCEEEEEe
Confidence 699999999999999999999997
No 13
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.86 E-value=1.8e-22 Score=239.07 Aligned_cols=91 Identities=31% Similarity=0.444 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003318 731 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 806 (830)
Q Consensus 731 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~-- 806 (830)
+.++.|||+|++||++..|+.+ |++.+|.|+|.++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 327 ~~~~~wl~~~~~~~~~~~~~~~---------~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~ 397 (683)
T TIGR00691 327 IDDMRWLNYLVEWQQESANFFE---------FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTG 397 (683)
T ss_pred HHHHHHHHHHHHHHhhcccchh---------HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeE
Confidence 5678999999999998776555 4799999999999999999999999999999999999999 87777
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003318 807 VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 807 ~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|+|||++|||+|+|+|||+|||+|
T Consensus 398 a~vng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 398 AKVNGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 599999999999999999999997
No 14
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.49 E-value=1.6e-14 Score=121.54 Aligned_cols=56 Identities=41% Similarity=0.585 Sum_probs=51.3
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003318 775 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGK--LVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 775 v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|.||||+|++.+||.|+||.||||.|| ++.+ .|+|||+.|+|+|+|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 579999999999999999999999999 6664 4799999999999999999999997
No 15
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.89 E-value=1.4e-09 Score=95.93 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=42.4
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003318 782 GEIMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 782 G~i~~Lp~GsT~~DfAy~i~--~~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+|.+.||.|+|+.||||.|| +++.+ ++ |||.|+++|+|+|||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 47778899999999999999 65542 36 999999999999999999997
No 16
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.79 E-value=6.4e-09 Score=91.64 Aligned_cols=49 Identities=35% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCC--ceEE-------ECCEEeCCCccCCCCCEEEEeC
Q 003318 782 GEIMRLRSGSTAADAAMKVG--LEG--KLVL-------VNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 782 G~i~~Lp~GsT~~DfAy~i~--~~~--~~~~-------VNg~lvpl~~~L~~GD~VeI~t 830 (830)
.+.+.||.|||+.|||++|| ++. +.++ +|||.|+++++|+|||+|||.+
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 46789999999999999999 333 3344 5999999999999999999986
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.73 E-value=3.1e-08 Score=81.58 Aligned_cols=56 Identities=45% Similarity=0.568 Sum_probs=49.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 775 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 775 v~VftP~G~i~~Lp~GsT~~DfAy~i~~~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+|||+|+|..+.+|.|.|+.|++..++.+ . ..++|||++++++++|++||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 58999999999999999999999888733 2 33599999999999999999999986
No 18
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.25 E-value=3.7e-07 Score=76.99 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.2
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 568 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 568 dvfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
.++||.|. +|.|+|+.++ +|.+|++|+| ||+ +|+|+++|++||+|+|+|
T Consensus 2 ~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~V-----ng~--~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 2 RVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKV-----NGQ--LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEE-----TTE--EEETTSBB-SSEEEEEEE
T ss_pred EEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEE-----cCE--ECCCCCCcCCCCEEEEEC
Confidence 36889994 7999997766 8899999999 999 999999999999999987
No 19
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.16 E-value=6e-06 Score=66.19 Aligned_cols=54 Identities=39% Similarity=0.521 Sum_probs=47.3
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 777 VCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 777 VftP~G~i~~Lp~GsT~~DfAy~i~~~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+..|+|+.+.+|.|+|+.|++..++.+ . ..++|||++++++++|.+||.||++|
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 567889999999999999999998732 2 33699999999999999999999986
No 20
>PRK01777 hypothetical protein; Validated
Probab=98.00 E-value=1.5e-05 Score=73.56 Aligned_cols=56 Identities=30% Similarity=0.386 Sum_probs=45.2
Q ss_pred ceEEEEcCCC---CeEeCCCCCCHHHHHHHhCCCC---------ceEEECCEEeCCCccCCCCCEEEEe
Q 003318 773 EVVIVCWPNG---EIMRLRSGSTAADAAMKVGLEG---------KLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 773 ~~v~VftP~G---~i~~Lp~GsT~~DfAy~i~~~~---------~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+++|. +|+- .-+++|.|+|+.|+.-+.|+.. ..+-|||+.|.++++|++||+|||.
T Consensus 7 ~V~ya-~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 7 EVVYA-LPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEEEE-CCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 34444 5543 3568999999999999999433 2478999999999999999999995
No 21
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.96 E-value=1.7e-05 Score=70.24 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred CeEeCCCCCCHHHHHHHhC--C--CCceEEECC-EEeCCCccCCCCCEEEEeC
Q 003318 783 EIMRLRSGSTAADAAMKVG--L--EGKLVLVNG-QLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~--~--~~~~~~VNg-~lvpl~~~L~~GD~VeI~t 830 (830)
+-+-||.|+|+.|||+.|| + +-+.|.|-| |.|..+|+|++||+|+|+|
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 4567799999999999999 3 335677776 9999999999999999986
No 22
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.86 E-value=1.2e-05 Score=91.14 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=40.9
Q ss_pred eEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003318 784 IMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~--~~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
.+.||.|||+.||||.|| ++..+ ++ |+|.|+++|+|+|||+|+|+|
T Consensus 342 ~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 342 AFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 899999999999999999 55432 35 899999999999999999986
No 23
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.79 E-value=6e-05 Score=76.87 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=54.4
Q ss_pred hcCCccccCc--chhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc---cccccC--------------CHHHHHhHh
Q 003318 115 HHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV---VDDACE--------------SLGSIEEEF 175 (830)
Q Consensus 115 H~gQ~RksGe--PYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDv---VEDT~~--------------T~eeI~~~F 175 (830)
+.|+...+|+ |++.|++.+|.+....+. |.+.|+||||||+ ++|+.. ..+.|+..|
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Ga-----d~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F 87 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGA-----DDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELF 87 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHc
Confidence 4455556786 589999999987665443 6799999999998 776532 256788899
Q ss_pred cHHHHHHHHHhhhhh
Q 003318 176 GDEVAKLVAGVSRLS 190 (830)
Q Consensus 176 G~~VA~LV~gVTKls 190 (830)
|++|+.+|..-..-+
T Consensus 88 ~~~V~~lV~~Hv~aK 102 (179)
T TIGR03276 88 SPSVTEPIRLHVQAK 102 (179)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877643
No 24
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.78 E-value=5.4e-05 Score=64.42 Aligned_cols=53 Identities=38% Similarity=0.549 Sum_probs=47.1
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003318 778 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 778 ftP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
++=||+.+++|.|.|..|+.-+.++.... +-|||.++| .++.|++||+|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 45589999999999999999999966654 489999999 999999999999974
No 25
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=97.58 E-value=0.00016 Score=61.23 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=45.3
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce-EEECCEEeCC----CccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGKL-VLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~~-~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
+=||+.+++|.|+|..|+.-++++.... +-|||++||- ++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEe
Confidence 4489999999999999999988865444 5999999997 78999999999985
No 26
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.56 E-value=0.00021 Score=57.65 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=45.6
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 777 VCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 777 VftP~G~i~~Lp~GsT~~DfAy~i~~~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+-.|+|....+|.|+|+.|++..++.. . -.++|||++++|+++|.+|+.||.+|
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 344779999999999999999998632 2 23599999999999999999999875
No 27
>PRK06437 hypothetical protein; Provisional
Probab=97.53 E-value=0.00019 Score=61.99 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=45.0
Q ss_pred cCCC---CeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 779 WPNG---EIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G---~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+=+| +-+++|.|.|..|+.-.+|+..+. +.|||+++|.++.|++||.|||++
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 3457 669999999999999999975543 589999999999999999999974
No 28
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.46 E-value=0.00022 Score=60.80 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=45.3
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003318 780 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 830 (830)
Q Consensus 780 P~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 830 (830)
=||+.+++|.|.|..|+--.+++.... +.|||++||.+ +.|++||.|+|++
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 379999999999999999999865543 58999999999 9999999999974
No 29
>PRK07440 hypothetical protein; Provisional
Probab=97.46 E-value=0.00026 Score=61.71 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=48.5
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003318 777 VCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 777 VftP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
-++=||+.+++|.|.|..|+--.+++..+. +-+||.+|| .++.|++||.|||++
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 556699999999999999999999976654 599999999 999999999999985
No 30
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=97.38 E-value=0.00035 Score=60.86 Aligned_cols=50 Identities=40% Similarity=0.579 Sum_probs=46.0
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003318 781 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 781 ~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
+|+-++++.+.|..|+--.+++.... +.|||.+|| .++.|++||.|||++
T Consensus 8 ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 8 NGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 59999999999999999999977655 599999999 999999999999974
No 31
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.32 E-value=0.00052 Score=59.67 Aligned_cols=47 Identities=36% Similarity=0.501 Sum_probs=42.0
Q ss_pred eEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 784 IMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
.+++|.|+|+.|+.-.+++...+ +.|||++|+.++.|++||.|+|++
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEc
Confidence 67889999999999999966554 599999999999999999999974
No 32
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.32 E-value=0.00038 Score=60.11 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=46.1
Q ss_pred cCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~G-sT~~DfAy~i~~~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 830 (830)
+=||+.+++|.| +|..|+--.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EECCEEEEcCCCcccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 348999999999 7999999999976554 59999999999 9999999999985
No 33
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.24 E-value=0.00072 Score=57.55 Aligned_cols=50 Identities=38% Similarity=0.555 Sum_probs=43.7
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003318 781 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 781 ~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
||+.+.+|.|.|..|+--.+++.... +-|||++|| .++.|++||.|||++
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 89999999999999999999866554 599999997 447999999999984
No 34
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.07 E-value=0.0013 Score=56.39 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=45.4
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
+=||+.+++|.|.|..|+--.+++...+ +-|||++|| -++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 4 LFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEE
Confidence 4489999999999999999988866543 499999999 778999999999985
No 35
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.91 E-value=0.00052 Score=60.91 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=35.6
Q ss_pred ccCCCc-------eeeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 576 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~t-------v~~~vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
||.|+| ||+.+|++|+.|++. . ||+ .|+++|.|++||+|+|+|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--k-~~~--~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLHAIDA--R-TGR--RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhcceeeEEe--e-CCE--EeCCCcEecCCCEEEEeC
Confidence 566766 566699999988652 2 788 899999999999999986
No 36
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=96.89 E-value=0.0018 Score=58.19 Aligned_cols=46 Identities=37% Similarity=0.478 Sum_probs=41.7
Q ss_pred eEeCCCCCCHHHHHHHhCCCCc---eEEECCEEeCCCccCCCCCEEEEe
Q 003318 784 IMRLRSGSTAADAAMKVGLEGK---LVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~~~~~---~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
.+.++.|+|..|..=++||.+. .+.|||+.|+++|.|++||.|.|.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4688999999999999998884 469999999999999999999984
No 37
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=96.89 E-value=0.00084 Score=60.76 Aligned_cols=55 Identities=36% Similarity=0.489 Sum_probs=35.0
Q ss_pred eEEEEcCCCC---eEeCCCCCCHHHHHHHhC---------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 774 VVIVCWPNGE---IMRLRSGSTAADAAMKVG---------LEGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 774 ~v~VftP~G~---i~~Lp~GsT~~DfAy~i~---------~~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
++|. +|+.. -+.||.|+|+.|+.-+-| +....+=|=||.|++++.|++||+|||-
T Consensus 5 V~yA-~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 5 VAYA-LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp EEEE-ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE
T ss_pred EEEE-CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEe
Confidence 4443 56544 368999999999988876 2333467889999999999999999994
No 38
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.77 E-value=0.0029 Score=53.97 Aligned_cols=50 Identities=32% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003318 780 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 780 P~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
=||+.+.+ .++|..|+--.+++..+. +-|||++||- +++|++||.|||++
T Consensus 5 ~Ng~~~~~-~~~tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT-EATTLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc-CcCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 48999999 468999999888876654 5999999998 99999999999974
No 39
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.73 E-value=0.0006 Score=60.42 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=37.6
Q ss_pred ccCCCceee-------ecCCceeEEEEE--EEccCCeeEEEecccccCCCCeEEEcC
Q 003318 576 LKMGHPVIR-------VEGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~tv~~-------~vG~~c~gAkV~--~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
||.|+||.+ .++.+|..|+|- ++..+|+ .|+++++|++||+|+|.+
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq--~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ--RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe--ECCCCCEecCCCEEEEeC
Confidence 789999654 488999999973 2334788 899999999999999975
No 40
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.23 E-value=0.0078 Score=51.58 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=45.0
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC---CccCCCCCEEEEeC
Q 003318 778 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP---NTELKDGDIVEVRV 830 (830)
Q Consensus 778 ftP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl---~~~L~~GD~VeI~t 830 (830)
+|=||+-+.+|.|.|..|+--.+++..+. +-+||.+||- ++.|++||.|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 34589999999999999999999976654 5899998884 45799999999985
No 41
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.14 E-value=0.013 Score=53.06 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=48.9
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003318 774 VVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 774 ~v~VftP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
...-++=||+.++++.|.|..|+--.+++..+. +-|||.+||- ++.|++||.|||++
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 344566799999999999999999999987764 4999999995 68999999999985
No 42
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.04 E-value=0.012 Score=51.29 Aligned_cols=48 Identities=31% Similarity=0.368 Sum_probs=39.6
Q ss_pred CeEeCCCCCCHHHHHHHhCC--C--------CceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 783 EIMRLRSGSTAADAAMKVGL--E--------GKLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~~--~--------~~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
..+.+|.|+|..|+--.+.. + ...+.|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 45688999999999888752 1 123699999999999999999999973
No 43
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.92 E-value=0.017 Score=51.32 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=40.6
Q ss_pred CCCeEeCCCCCCHHHHHHHhCC---------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 781 NGEIMRLRSGSTAADAAMKVGL---------EGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 781 ~G~i~~Lp~GsT~~DfAy~i~~---------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+++.+++|.|+|..|..-.+.. ....+-|||+.++.+++|++||.|+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 3477899999999999887741 122368999999999999999999997
No 44
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.18 E-value=0.028 Score=48.55 Aligned_cols=47 Identities=36% Similarity=0.473 Sum_probs=41.0
Q ss_pred CeEeCCCCCCHHHHHHHhC--C------CCceEEECCEEeCC---CccCCCCCEEEEe
Q 003318 783 EIMRLRSGSTAADAAMKVG--L------EGKLVLVNGQLVLP---NTELKDGDIVEVR 829 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~--~------~~~~~~VNg~lvpl---~~~L~~GD~VeI~ 829 (830)
..+.+|.|+|..|+--.+. . ....+.|||++++. +++|++||.|.|+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 5678899999999999997 3 33447999999999 9999999999997
No 45
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=95.09 E-value=0.017 Score=47.37 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=38.5
Q ss_pred ccccccc---ccCCCceeeec-------CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 569 LFQKYSS---LKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 569 vfTPkg~---Lp~G~tv~~~v-------G~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
+|.|.|. +|.|.|+.+++ ...++++.+ ||+ ++++++.|+.||.|++++
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~v-----ng~--~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----NGK--LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEE-----CCE--ECCCCCCCCCCCEEEEEC
Confidence 6888884 68888876642 245677777 899 999999999999999975
No 46
>PTZ00258 GTP-binding protein; Provisional
Probab=95.04 E-value=0.034 Score=63.45 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=43.2
Q ss_pred eEEEEcC---CCCeEeCCCCCCHHHHHHHhC--CCC--ceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003318 774 VVIVCWP---NGEIMRLRSGSTAADAAMKVG--LEG--KLVLV-----------------NG--QLVLPNTELKDGDIVE 827 (830)
Q Consensus 774 ~v~VftP---~G~i~~Lp~GsT~~DfAy~i~--~~~--~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 827 (830)
-+-+||- .-+-..+|+|||+.|+|..|| ++. ..|.| -| |++--+|.++|||||+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 3446662 236789999999999999999 332 33455 26 8999999999999999
Q ss_pred Ee
Q 003318 828 VR 829 (830)
Q Consensus 828 I~ 829 (830)
++
T Consensus 384 f~ 385 (390)
T PTZ00258 384 FK 385 (390)
T ss_pred EE
Confidence 86
No 47
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=94.79 E-value=0.02 Score=63.54 Aligned_cols=45 Identities=42% Similarity=0.484 Sum_probs=38.9
Q ss_pred EeCCCCCCHHHHHHHhC-----------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 785 MRLRSGSTAADAAMKVG-----------LEGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 785 ~~Lp~GsT~~DfAy~i~-----------~~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+-|++|||+.|++.+|| +=++-+|-+||.|-++|.|.|||+|+|.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEe
Confidence 45789999999999999 2224468899999999999999999996
No 48
>PRK14707 hypothetical protein; Provisional
Probab=94.14 E-value=0.13 Score=67.66 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=84.5
Q ss_pred EEeecChhHHHHHHHh----cCCCC----CcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCcccccccccc
Q 003318 415 SSRLKSLYSIFSKMRR----KDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYI 485 (830)
Q Consensus 415 ~gR~K~~ySI~~Km~r----k~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDYI 485 (830)
..|+|+..|+.+|+.. ++.++ ..|.|.+-.-||+++. .|+..+..+++.+... |+-+ +++++-
T Consensus 2308 e~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~------~Fva~~r~Il~aL~~qGy~~v--kvkN~F 2379 (2710)
T PRK14707 2308 QHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQ------GFTAGLRAVLAALDDQGHARV--KLTNQF 2379 (2710)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCch------hHHHHHHHHHHHHHHcCCeEE--EEeecc
Confidence 4699999999999973 45665 5799987777777752 4888999999887653 6544 577776
Q ss_pred cCCCCCCCceeEEEEEcCCCcEEEEEEecchhHHHHHhhhhhhhccccc
Q 003318 486 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 534 (830)
Q Consensus 486 a~PK~nGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 534 (830)
. .+.++|..+++++..|+|..+|||.=|..=-..-+. -|=.||+.
T Consensus 2380 ~-~~~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2380 T-EYSPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred c-CCCCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 3 346899999999999999999999999876555553 47789974
No 49
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=94.01 E-value=0.13 Score=45.46 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=38.3
Q ss_pred CeEeCCCC-CCHHHHHHHhC-----C----CCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 783 EIMRLRSG-STAADAAMKVG-----L----EGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 783 ~i~~Lp~G-sT~~DfAy~i~-----~----~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+.+++|.+ +|..|..-.+. + ....+-|||++++.+++|++||.|.|+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 46788876 99999888884 1 112379999999999999999999986
No 50
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=0.079 Score=49.03 Aligned_cols=54 Identities=33% Similarity=0.412 Sum_probs=41.3
Q ss_pred CCceEEEEcCCCCeEeCCCCCCHHHHHHHhCCC-------Cc-e-EEECCEEeCCCccCCCCCEEEEe
Q 003318 771 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-------GK-L-VLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 771 ~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~~~-------~~-~-~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+++..|+++ +.|+.|+|+.|++..=|+- -. + +=|=|+.|-++.+|++||+|||.
T Consensus 12 lPerq~l~~-----v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 12 LPERQYLCR-----VQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred cCCcceEEE-----EEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEe
Confidence 344444443 7899999999999987722 11 1 46679999999999999999994
No 51
>PLN02908 threonyl-tRNA synthetase
Probab=93.63 E-value=0.35 Score=59.07 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCeEeCCC-CCCHHHHHHHhCC--CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003318 773 EVVIVCWPNGEIMRLRS-GSTAADAAMKVGL--EGK--LVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 773 ~~v~VftP~G~i~~Lp~-GsT~~DfAy~i~~--~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+.+-|--|+|.+...|. |+||.|.|..+.- ... .++|||++++|+++|.....||++|
T Consensus 50 ~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 50 DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEec
Confidence 34656669999999994 5999999999973 233 3699999999999999888899875
No 52
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=92.41 E-value=0.26 Score=59.64 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 775 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 775 v~VftP~G~i~~Lp~GsT~~DfAy~i~~~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+.|.-|+|.+...|.|.|+.|.|..+.-+ . -.++|||++++|++++..+..||++|
T Consensus 6 i~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEec
Confidence 56777889999999999999999988632 2 23699999999999999999999875
No 53
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=91.22 E-value=0.17 Score=40.12 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=32.7
Q ss_pred ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 576 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
+|.|.|+.++ .....++++| ||+ +++|++.|..||.|++++
T Consensus 13 ~~~g~t~~~~~~~~~~~~~~~~~~~~v-----n~~--~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 13 LPKGATAMDFALKIHTDLGKGFIGALV-----NGQ--LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred cCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--ECCCCcCcCCCCEEEEeC
Confidence 5777776664 2345678888 899 999999999999999875
No 54
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=91.07 E-value=0.83 Score=48.70 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=41.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCC----CCCChhhHHHHhhhhcccc
Q 003318 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPS----SGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 93 ~~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~----~g~~D~dtI~AALLHDvVE 162 (830)
+.+..+.+.+.+++|.+|+.+... ..-+.|.++|......+... .+.......+||||||+..
T Consensus 30 ~~~~~iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 30 VEDTPLPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred cCCCCCCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 344556788999999999987754 24578999987543332210 1222344569999999865
No 55
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=90.40 E-value=0.12 Score=46.11 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=29.1
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCC-ChhhHHHHhhhhccccccc
Q 003318 123 GDPYLTHCIHTGRILAMLIPSSGK-RAVDTVVAGILHDVVDDAC 165 (830)
Q Consensus 123 GePYI~Hpl~VA~ILa~l~~~~g~-~D~dtI~AALLHDvVEDT~ 165 (830)
+++.+.|.+.|+.+...+....+. .......||||||+-....
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 567889999998877544311111 1346789999999977543
No 56
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=89.84 E-value=0.49 Score=42.85 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHcCCCCC--CChhhHHHHhhhhcccccc
Q 003318 127 LTHCIHTGRILAMLIPSSG--KRAVDTVVAGILHDVVDDA 164 (830)
Q Consensus 127 I~Hpl~VA~ILa~l~~~~g--~~D~dtI~AALLHDvVEDT 164 (830)
+.|.+.|+.+...+....+ ..-.-..+||||||+-.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988766542111 0112267999999997654
No 57
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.79 E-value=0.66 Score=41.53 Aligned_cols=45 Identities=33% Similarity=0.445 Sum_probs=35.8
Q ss_pred eEeCCCCCCHHHHHHHhC--CC---------------CceEEECCEEeCCCc--cCCCCCEEEEe
Q 003318 784 IMRLRSGSTAADAAMKVG--LE---------------GKLVLVNGQLVLPNT--ELKDGDIVEVR 829 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~--~~---------------~~~~~VNg~lvpl~~--~L~~GD~VeI~ 829 (830)
.+++| |+|..|+.-.+. .+ +..+.|||+.+..+. +|++||.|.|+
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 45677 999999888873 11 133699999998887 99999999986
No 58
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.25 E-value=1.8 Score=48.78 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccC-------CHHHHHh-H
Q 003318 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE-------SLGSIEE-E 174 (830)
Q Consensus 103 ~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~-------T~eeI~~-~ 174 (830)
...+++.+-.+.+. .+..+.|.+.|+.....+....+......++||||||+-..... ..+-+++ .
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 35566666544433 22357999998876443322122223456688999999653321 1223333 2
Q ss_pred hcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHH
Q 003318 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKAR 254 (830)
Q Consensus 175 FG~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~ 254 (830)
|.++++.+|+.-..- .++.. +..+ ..+....- +....-..+|-.||||..+.. .++.+.+.
T Consensus 245 ~~e~i~~iIe~H~g~-G~~~~---~~~~----~gL~~~~~---------~P~TLEakIV~dADrL~~~~r--~v~~e~~~ 305 (339)
T PRK12703 245 IDDRVVSIVERHIGA-GITSE---EAQK----LGLPVKDY---------VPETIEEMIVAHADNLFAGDK--RLNLKQVM 305 (339)
T ss_pred CCHHHHHHHHHHhcc-CCCcc---hhhc----cCCccccC---------CCCCHHHHHHHHHHHHhcCCC--cCCHHHHH
Confidence 556777777554421 11100 0000 00000000 011123446778888876653 24444433
Q ss_pred HHHHhhHHHHHHHHHHhChHHHHHHHHHHH
Q 003318 255 AVAQETLLIWCSLASRLGLWALKAELEDLC 284 (830)
Q Consensus 255 ~iA~ETl~IYaPLA~RLGi~~iK~ELEDLa 284 (830)
+-.++. -++.-++| +..|..|||.++
T Consensus 306 ~k~~~~--~~~~~~~R--~~~l~~~~~~~~ 331 (339)
T PRK12703 306 DKYRKK--GLHDAAER--IKKLHEELSSIC 331 (339)
T ss_pred HHHHhh--hhhHHHHH--HHHHHHHHHHHh
Confidence 332332 12345566 677778888765
No 59
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=88.46 E-value=0.41 Score=40.04 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=23.6
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEE
Q 003318 802 LEGKLVLVNGQLV-LPNTELKDGDIVEV 828 (830)
Q Consensus 802 ~~~~~~~VNg~lv-pl~~~L~~GD~VeI 828 (830)
+....++|||+.+ ..++.|+.||.|+|
T Consensus 31 i~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 31 LQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 4556689999999 88999999999987
No 60
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=88.38 E-value=1.4 Score=39.19 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhC----------C-CCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 789 SGSTAADAAMKVG----------L-EGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 789 ~GsT~~DfAy~i~----------~-~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
.|+|+.|+--.+- . +.-.+-||++++..+|+|++||.|.|+
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 4789988766652 1 222469999999999999999999886
No 61
>PRK09602 translation-associated GTPase; Reviewed
Probab=88.28 E-value=0.17 Score=57.84 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred ccCCCc-------eeeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003318 576 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 625 (830)
Q Consensus 576 Lp~G~t-------v~~~vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~ 625 (830)
||.|+| ||+.+|.+|+.|... . +++ .|+++|.|+.||+|+|++++
T Consensus 345 l~~g~t~~d~A~~IH~d~~~~fi~A~~~--~-~~~--~~g~~~~l~dgDiv~i~~~~ 396 (396)
T PRK09602 345 LPKGSTARDLAYKIHTDIGEGFLYAIDA--R-TKR--RIGEDYELKDGDVIKIVSTA 396 (396)
T ss_pred ECCCCCHHHHHHHHHHHHHhhceehhcc--c-CCc--ccCCCcEecCCCEEEEEeCC
Confidence 677777 577799999888752 2 577 89999999999999999864
No 62
>PRK01777 hypothetical protein; Validated
Probab=87.11 E-value=0.49 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=21.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRPS 625 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts~ 625 (830)
||+ .|.+++.|+.||.|||...-
T Consensus 55 ~Gk--~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 55 YSR--PAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred eCe--ECCCCCcCCCCCEEEEecCC
Confidence 799 99999999999999997763
No 63
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=86.28 E-value=0.38 Score=38.27 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.9
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEE
Q 003318 802 LEGKLVLVNGQLVL-PNTELKDGDIV 826 (830)
Q Consensus 802 ~~~~~~~VNg~lvp-l~~~L~~GD~V 826 (830)
+....++|||+.|. ++++++.||+|
T Consensus 23 I~~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 23 IKQGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHTTTEEETTEEESSTTSBESTTEEE
T ss_pred cCCCEEEECCEEEcCCCCCCCCcCCC
Confidence 34466899999999 99999999987
No 64
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=85.41 E-value=1.6 Score=40.39 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhC----------C--C-----CceEEECCEEe----CCCccCCCCCEEEEe
Q 003318 789 SGSTAADAAMKVG----------L--E-----GKLVLVNGQLV----LPNTELKDGDIVEVR 829 (830)
Q Consensus 789 ~GsT~~DfAy~i~----------~--~-----~~~~~VNg~lv----pl~~~L~~GD~VeI~ 829 (830)
.|+|..|.--.+- . + .-.+.|||+-+ -++|+|++||.|.|+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 6899999877661 1 1 13479999997 478999999999986
No 65
>PRK14707 hypothetical protein; Provisional
Probab=85.17 E-value=1.9 Score=57.56 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=76.5
Q ss_pred cChhHHHHHHHhc---CCCC----CcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHh-cCCcccccccccccCCCC
Q 003318 419 KSLYSIFSKMRRK---DVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR-LWIPIDGEFDDYIVNPKP 490 (830)
Q Consensus 419 K~~ySI~~Km~rk---~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~-~~~pi~~r~kDYIa~PK~ 490 (830)
|+..||.+|+.+. |++. ..|.|.+-.=||.+. +.++...+.+.+.+.. .|+.+ ++|++-..| .
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d 2614 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-D 2614 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc------chHHHHHHHHHHHHHhcCCeEE--EeeccccCC-C
Confidence 9999999999854 4443 468896555555543 3578888888888765 46655 688888554 4
Q ss_pred CCCceeEEEEEcCCCcEEEEEEecchhHHHHHhhhhhhhcccc
Q 003318 491 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533 (830)
Q Consensus 491 nGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~ 533 (830)
+.|..+-+++..++|..+|||.=|..=-. +..+ .|=.|+.
T Consensus 2615 ~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~-~K~~--tH~lYek 2654 (2710)
T PRK14707 2615 GTYRGINASFTDAEGYAFEVQFHTAESFN-AKAQ--THLSYKR 2654 (2710)
T ss_pred CcccceeeeEEcCCCCeEEEEeccHHHHH-HHHH--hHHHHHh
Confidence 77999999999999999999999975433 3333 4778975
No 66
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=84.57 E-value=2.9 Score=35.61 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 781 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 781 ~G~i~~Lp~GsT~~DfAy~i~~~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+|+-+....|+|.-++.-.+.-+.-.+-+||-..--+.+|+.||.|-.+
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEE
Confidence 7889999999999999999988888899999999999999999999765
No 67
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.52 E-value=0.89 Score=38.60 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=30.8
Q ss_pred cccCCCceeee---cC--CceeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003318 575 SLKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 575 ~Lp~G~tv~~~---vG--~~c~gAkV~~v~~ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
++|.|.|+.+. .| ...+...+ ||. +|| .++.|+.||.|||++.
T Consensus 11 ~~~~~~tl~~lL~~l~~~~~~vav~v-----Ng~--iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 11 ELPDGESVAALLAREGLAGRRVAVEV-----NGE--IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred EcCCCCCHHHHHHhcCCCCCeEEEEE-----CCe--EeCHHHcCcccCCCCCEEEEEEE
Confidence 36677776644 23 33444444 899 899 9999999999999763
No 68
>PRK09169 hypothetical protein; Validated
Probab=83.77 E-value=3.1 Score=56.11 Aligned_cols=108 Identities=23% Similarity=0.316 Sum_probs=80.1
Q ss_pred EEeecChhHHHHHHH----hcCCCC----CcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCcccccccccc
Q 003318 415 SSRLKSLYSIFSKMR----RKDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYI 485 (830)
Q Consensus 415 ~gR~K~~ySI~~Km~----rk~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDYI 485 (830)
..|+|+..|+.+|+. ++++++ ..|.|.+-.-|++++ ..++..+..+++.+-.. |+-+ +++++-
T Consensus 1917 e~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~------~~Fva~~r~iv~~L~~~G~~~V--kv~N~F 1988 (2316)
T PRK09169 1917 AHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPP------QTFVAGYRRILGALDEQGHTRT--RVTNHF 1988 (2316)
T ss_pred HhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCC------ccHHHHHHHHHHHHHhCCCeEE--EEEeee
Confidence 569999999999998 456665 478996655566554 24788999999988653 6544 455544
Q ss_pred cCCCCCCCceeEEEE-EcCCCcEEEEEEecchhHHHHHhhhhhhhccccc
Q 003318 486 VNPKPSGYQSLHTAV-QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 534 (830)
Q Consensus 486 a~PK~nGYqSLHt~V-~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~ 534 (830)
..+ .++|..+|+++ ..++|..+|||.=|..=-..-+. -|-.||+.
T Consensus 1989 ~~~-~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1989 KKR-GPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred ccC-CCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 332 49999999999 67899999999999765555443 37789963
No 69
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=82.78 E-value=1.3 Score=50.37 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=34.6
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCCce--EEE-------------C----CE--EeCCCccCCCCCEEEEe
Q 003318 783 EIMRLRSGSTAADAAMKVG--LEGKL--VLV-------------N----GQ--LVLPNTELKDGDIVEVR 829 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~--~~~~~--~~V-------------N----g~--lvpl~~~L~~GD~VeI~ 829 (830)
+...+|+||||.|+|..|| ++-.. |-| + |+ +.-=+|.++|||||.|+
T Consensus 292 rawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 292 RAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred EEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 5678999999999999999 33221 221 1 22 34569999999999986
No 70
>smart00363 S4 S4 RNA-binding domain.
Probab=81.53 E-value=1.3 Score=35.04 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.4
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEE
Q 003318 804 GKLVLVNGQLV-LPNTELKDGDIVEV 828 (830)
Q Consensus 804 ~~~~~VNg~lv-pl~~~L~~GD~VeI 828 (830)
+..++|||+.+ ..+++|+.||+|++
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~ 50 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISV 50 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEE
Confidence 44689999999 99999999999987
No 71
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=81.17 E-value=1.3 Score=35.29 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 576 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
+|.|.++.++ .+...++|+| ||+ +++|++.+..|+.|+.++
T Consensus 13 ~~~~~t~~~~~~~~~~~~~~~~v~~~v-----ng~--~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 13 FPKGTTPLDIAKSISPGLAKKAVAAKV-----NGE--LVDLSRPLEEDCELEIIT 60 (61)
T ss_pred eCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--EecCCcCcCCCCEEEEEe
Confidence 5667665553 3456788998 899 999999999999999875
No 72
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=80.81 E-value=1.2 Score=53.88 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred cccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 575 SLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 575 ~Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
.+|.|.|++++ .++.+++|+| ||+ +++|++.+.+++.||+++..++
T Consensus 13 ~~~~gtt~~dia~~~~~~~~~~~v~a~v-----ng~--l~dL~~~l~~d~~Vefi~~~~~ 65 (638)
T PRK00413 13 EFEAGVTVADVAASISPGLAKAAVAGKV-----NGE--LVDLSTPIEEDASLEIITAKDE 65 (638)
T ss_pred EeCCCCCHHHHHHHhhhhchhheEEEEE-----CCE--EeeCCccccCCCceeeeeccch
Confidence 36889887765 5789999999 899 9999999999999999987653
No 73
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=79.91 E-value=1.5 Score=38.38 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.4
Q ss_pred ccCCCceeee---cCC--ceeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcC
Q 003318 576 LKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~tv~~~---vG~--~c~gAkV~~v~~ngr~~lVp----ls~~L~~Gd~VeI~t 623 (830)
++.+.|+.+. .|- +-+...+ ||. +|| ..+.|++||.|||++
T Consensus 14 ~~~~~tv~dLL~~l~~~~~~vav~v-----Ng~--iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 14 IAEGTTVADLLAQLGLNPEGVAVAV-----NGE--IVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cCCCCcHHHHHHHhCCCCceEEEEE-----CCE--EccchhhhhccccCCCEEEEEE
Confidence 4555565543 333 3444444 899 999 999999999999976
No 74
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=78.86 E-value=2.1 Score=40.37 Aligned_cols=25 Identities=48% Similarity=0.659 Sum_probs=22.9
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
.-|+|||+.+-+++.++.||+++|.
T Consensus 34 GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 34 GRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred CeEEECCEEcccccccCCCCEEEEE
Confidence 3479999999999999999999985
No 75
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=78.74 E-value=1 Score=41.19 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.0
Q ss_pred CeeEEEecccccCCCCeEEEcCC
Q 003318 602 GRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 602 gr~~lVpls~~L~~Gd~VeI~ts 624 (830)
|| .|++++.|+.||.|||.+.
T Consensus 53 Gk--~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 53 GK--LVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp E---S--TT-B--TT-EEEEE-S
T ss_pred ee--EcCCCCcCCCCCEEEEecc
Confidence 89 8999999999999999765
No 76
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=77.38 E-value=1.9 Score=36.72 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003318 601 GGRELLVAVS----FGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls----~~L~~Gd~VeI~ts 624 (830)
||+ +||-+ +.|+.||.|+|++.
T Consensus 36 Ng~--~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 36 NGE--IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 899 99999 99999999999763
No 77
>PRK07440 hypothetical protein; Provisional
Probab=76.93 E-value=2.4 Score=37.13 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=30.5
Q ss_pred cccCCCceeee---cCC--ceeEEEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003318 575 SLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 575 ~Lp~G~tv~~~---vG~--~c~gAkV~~v~~ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
+++.|.|+.++ .|. +-+...+ ||. +|| -++.|+.||.|||++.
T Consensus 15 ~~~~~~tl~~lL~~l~~~~~~vav~~-----N~~--iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 15 TCSSGTSLPDLLQQLGFNPRLVAVEY-----NGE--ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred EcCCCCCHHHHHHHcCCCCCeEEEEE-----CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 35667776643 233 2334444 899 999 9999999999999863
No 78
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=75.16 E-value=3.2 Score=44.06 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccC
Q 003318 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166 (830)
Q Consensus 122 sGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~ 166 (830)
+|..-+.|+++|+.+...+....|.+..-+..||||||+.--...
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 788889999999976544433233323346689999999875443
No 79
>PRK06437 hypothetical protein; Provisional
Probab=73.93 E-value=2.2 Score=37.02 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=29.2
Q ss_pred ccCCCceeee---cCCc--eeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003318 576 LKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 576 Lp~G~tv~~~---vG~~--c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
++.|.|+-+. .|-. -++..| ||+ +||.++.|+.||.|+|++.
T Consensus 17 i~~~~tv~dLL~~Lgi~~~~vaV~v-----Ng~--iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 17 IDHELTVNDIIKDLGLDEEEYVVIV-----NGS--PVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred cCCCCcHHHHHHHcCCCCccEEEEE-----CCE--ECCCceEcCCCCEEEEEec
Confidence 5666665533 3332 223334 899 9999999999999999753
No 80
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=73.11 E-value=2.8 Score=37.34 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=32.9
Q ss_pred ccCCCc-------eeeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 576 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 576 Lp~G~t-------v~~~vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
||.|+| ||+.+...-+-|.|. +++ .|..+|.|+.||+|.|.+
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A~v~----~~~--~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEAVGG----RRR--LEGKDVILGKNDILKFKT 76 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEEEEc----cCE--EECCCEEecCCCEEEEEC
Confidence 466766 566677788888883 135 799999999999999975
No 81
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=71.26 E-value=3.8 Score=33.26 Aligned_cols=26 Identities=46% Similarity=0.759 Sum_probs=22.5
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEE
Q 003318 803 EGKLVLVNGQLV-LPNTELKDGDIVEV 828 (830)
Q Consensus 803 ~~~~~~VNg~lv-pl~~~L~~GD~VeI 828 (830)
....++|||+.+ .++++++.||+|.+
T Consensus 24 ~~g~V~vn~~~~~~~~~~v~~~d~i~i 50 (70)
T cd00165 24 KHGHVLVNGKVVTKPSYKVKPGDVIEV 50 (70)
T ss_pred HcCCEEECCEEccCCccCcCCCCEEEE
Confidence 345689999999 89999999999876
No 82
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=68.10 E-value=4.6 Score=36.43 Aligned_cols=23 Identities=43% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEECCEEeCCCccCCCCCEEEEe
Q 003318 807 VLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 807 ~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+.+|..+++++|+|++||.|-|+
T Consensus 56 ~~~~~~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 56 AANNEFLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred eeeceeeccccccCCCCCEEEEe
Confidence 47789999999999999999886
No 83
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=67.59 E-value=3.7 Score=34.52 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=20.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.++. .++|++||++.|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 568999999999 899999999986
No 84
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=64.37 E-value=6.3 Score=33.78 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003318 601 GGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
||+ +|| =++.|+.||.|||++.
T Consensus 37 N~~--iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 37 NQQ--IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCE--EeChHHcCccccCCCCEEEEEEE
Confidence 899 999 6678999999999863
No 85
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=63.54 E-value=6.5 Score=34.19 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ +||-++.|+.||.|++++.
T Consensus 45 Ng~--iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 45 NGK--VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred CCE--ECCCCcCcCCCCEEEEEcc
Confidence 899 9999999999999999763
No 86
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=62.30 E-value=6.9 Score=33.88 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003318 601 GGRELLVAVS----FGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls----~~L~~Gd~VeI~ts 624 (830)
||. +||=+ +.|+.||.|||++.
T Consensus 38 N~~--iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 38 NKD--ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 899 99999 99999999999863
No 87
>PRK10119 putative hydrolase; Provisional
Probab=60.84 E-value=18 Score=38.96 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
...+.++..|..+...+ ..+|.. +.|..+|......+....+....-..+||||||+..
T Consensus 4 ~~~~~~~~~~v~~~l~~--~~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 4 QHWQAQFENWLKNHHQH--QDAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHHHhhc--CCCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 34566777777776544 234443 567777664332221112223345679999999975
No 88
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=60.13 E-value=3.1 Score=47.39 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.1
Q ss_pred CeEeCCCCCCHHHHHHHhCCCCc-eEEECCEE--eCCCccCCCCCEEEE
Q 003318 783 EIMRLRSGSTAADAAMKVGLEGK-LVLVNGQL--VLPNTELKDGDIVEV 828 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~~~~~-~~~VNg~l--vpl~~~L~~GD~VeI 828 (830)
|....+.|||++|++|.||-+.- .++-.|+. +-=+|.+++||++..
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred chhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 56778899999999999996642 23333433 666999999999954
No 89
>PRK03826 5'-nucleotidase; Provisional
Probab=59.12 E-value=20 Score=37.53 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=24.9
Q ss_pred cchhhhHHHHHHHHHHcC------CCCCCChhhHHHHhhhhccccc
Q 003318 124 DPYLTHCIHTGRILAMLI------PSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~------~~~g~~D~dtI~AALLHDvVED 163 (830)
|..-.|.+.||.+.-.+. ...+..-..++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 456789999886632221 1111222456789999999983
No 90
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=58.79 E-value=8.6 Score=32.44 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.8
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
.+-..|.+.|+.....+....+........||||||+-.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 344678888876655443222222235678999999744
No 91
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=56.55 E-value=9.5 Score=40.06 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=23.4
Q ss_pred CCceEEECCEEeC-CCccCCCCCEEEEe
Q 003318 803 EGKLVLVNGQLVL-PNTELKDGDIVEVR 829 (830)
Q Consensus 803 ~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 829 (830)
.+..++|||+.|. +++.|+.||+|+|.
T Consensus 116 ~~G~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 116 SHGHILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred HCCcEEECCEEECCCCcCCCCCCEEEEC
Confidence 3445899999997 89999999999985
No 92
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=56.44 E-value=12 Score=31.93 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003318 601 GGRELLVAV----SFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpl----s~~L~~Gd~VeI~ts 624 (830)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 36 NGE--LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCE--EcCHHHcCccccCCCCEEEEEEe
Confidence 899 9998 889999999999863
No 93
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.69 E-value=13 Score=31.62 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.0
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003318 601 GGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
||+ +|| -++.|+.||.|||++.
T Consensus 35 N~~--iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 35 NGE--IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 799 886 3468999999999863
No 94
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=52.07 E-value=6.4 Score=35.52 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.5
Q ss_pred chhhhHHHHHHHHHHcCCCC---CCChhhHHHHhhhhcccccc
Q 003318 125 PYLTHCIHTGRILAMLIPSS---GKRAVDTVVAGILHDVVDDA 164 (830)
Q Consensus 125 PYI~Hpl~VA~ILa~l~~~~---g~~D~dtI~AALLHDvVEDT 164 (830)
+...|.+.|+.+...+.... +.......+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 45789999888776543210 01124577999999998854
No 95
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=51.92 E-value=11 Score=45.51 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 803 EGKLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 803 ~~~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
..-.++|||++++|++++.+|+.||++|
T Consensus 34 ~~v~a~vng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 34 AAVAGKVNGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred heEEEEECCEEeeCCccccCCCceeeee
Confidence 4467899999999999999999999985
No 96
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=51.77 E-value=15 Score=33.24 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.1
Q ss_pred CceeEEEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003318 588 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 623 (830)
Q Consensus 588 ~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~t 623 (830)
+.=+|...+ ||+ -|+++|.++.||.|++..
T Consensus 46 ~tEV~~i~v----NG~--~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 46 HTEVGLILV----NGR--PVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred hHHeEEEEE----CCE--ECCCcccCCCCCEEEEEe
Confidence 444556654 899 899999999999999953
No 97
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=50.98 E-value=11 Score=34.67 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=27.0
Q ss_pred eEeCCCCCCHHHHHHHhCCC-------Cce--------------EEECCE--EeCCCccCCCCCEEEEe
Q 003318 784 IMRLRSGSTAADAAMKVGLE-------GKL--------------VLVNGQ--LVLPNTELKDGDIVEVR 829 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~~~-------~~~--------------~~VNg~--lvpl~~~L~~GD~VeI~ 829 (830)
--.++.|+|+.++|-.||-. ... +|=.|+ +.-=+|.++|||||.++
T Consensus 14 aWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 14 AWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEE
T ss_pred EEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEE
Confidence 34689999999999999811 100 111343 44459999999999875
No 98
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=50.95 E-value=31 Score=30.93 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=38.3
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCC-----------------Cc---e-EEECCEE-eC-CCccCCCCCEEEE
Q 003318 774 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-----------------GK---L-VLVNGQL-VL-PNTELKDGDIVEV 828 (830)
Q Consensus 774 ~v~VftP~G~i~~Lp~GsT~~DfAy~i~~~-----------------~~---~-~~VNg~l-vp-l~~~L~~GD~VeI 828 (830)
..+-|+=+|+-+..+.|.|.++++.+.|+. +. | |.|||+. |+ =.|++++|-.|+-
T Consensus 2 ~~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE-
T ss_pred CEEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEE
Confidence 345788899999999999999999998611 11 2 7999987 43 3688999988864
No 99
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=49.97 E-value=11 Score=37.54 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=24.6
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
+.-+.|.+.||.+...+....+......-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 344789999886543222111222456789999999876
No 100
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=49.66 E-value=15 Score=38.57 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=23.0
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 803 EGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 803 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
.+.-+.|||+.| .+++.++.||+|+|.
T Consensus 113 ~~G~V~VNgk~v~~ps~~V~~GD~I~V~ 140 (200)
T TIGR01017 113 SHGHILVNGKKVDIPSYQVRPGDIISIK 140 (200)
T ss_pred HCCCEEECCEEeCCCCCCCCCCCEEEEe
Confidence 344589999999 689999999999985
No 101
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=47.35 E-value=16 Score=38.56 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=23.4
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
+.+.-+.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 111 VNHGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred HHCCcEEECCEEecCccccCCCCCEEEEc
Confidence 4445589999999 679999999999984
No 102
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=46.02 E-value=16 Score=36.84 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=24.0
Q ss_pred cchhhhHHHHHHHHH---HcCCCCC--CChhhHHHHhhhhcccc
Q 003318 124 DPYLTHCIHTGRILA---MLIPSSG--KRAVDTVVAGILHDVVD 162 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa---~l~~~~g--~~D~dtI~AALLHDvVE 162 (830)
+..+.|.+.|+.+.. ......+ .......+||||||+-.
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK 55 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGR 55 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCc
Confidence 456789999886633 2211001 22245778999999865
No 103
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=45.14 E-value=20 Score=36.85 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=25.5
Q ss_pred ccCcch--hhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003318 121 KTGDPY--LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (830)
Q Consensus 121 ksGePY--I~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDv 160 (830)
-+|+|. ..|.+..|. ||+-.+ .+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~At-lAerdG----a~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCAT-LAERDG----ADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhH-HHHhcC----CcHHHHHHHHHHhH
Confidence 478874 579998774 454322 36789999999997
No 104
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=44.86 E-value=23 Score=37.54 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 829 (830)
|.|..+.|||+.|- ++|.++-||.|+|.
T Consensus 116 V~HGHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 116 VSHGHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred hhcceEEECCEEeccCcEEecCCCEEEee
Confidence 55556899999996 68999999999985
No 105
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=43.49 E-value=21 Score=38.83 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
+....|+|||+.| -.+++++.||+|.|.
T Consensus 205 I~~G~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 205 IKAGRLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred HHCCeEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4456689999999 799999999999985
No 106
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=42.05 E-value=15 Score=38.38 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=28.7
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccccc
Q 003318 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165 (830)
Q Consensus 123 GePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~ 165 (830)
.++-+.|++.||....++..--+.....+=+||+|||..-+-+
T Consensus 15 ~~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 15 SEKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3456899999987654433212223345779999999987655
No 107
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=41.61 E-value=22 Score=39.03 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
+....|+|||+.+ ..++.++.||+|.|+
T Consensus 213 I~~g~V~vN~~~v~~~s~~v~~gD~isiR 241 (267)
T PLN00051 213 ISSGDVRVNWREVTKNGTTLKTGDVVSVS 241 (267)
T ss_pred HHcCcEEECCEEcCCCCCCCCCCCEEEEe
Confidence 4445689999997 799999999999987
No 108
>PRK11507 ribosome-associated protein; Provisional
Probab=41.18 E-value=27 Score=31.07 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCCceEEECCEEeCC-CccCCCCCEEEE
Q 003318 802 LEGKLVLVNGQLVLP-NTELKDGDIVEV 828 (830)
Q Consensus 802 ~~~~~~~VNg~lvpl-~~~L~~GD~VeI 828 (830)
+....|+|||....- ..+|++||+|++
T Consensus 34 I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 34 IAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred HHcCceEECCEEecccCCCCCCCCEEEE
Confidence 444568999997654 358999999997
No 109
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=40.08 E-value=17 Score=36.84 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=24.7
Q ss_pred CcchhhhHHHHHHHH---HHcCCCCCCChhhHHHHhhhhccccc
Q 003318 123 GDPYLTHCIHTGRIL---AMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 123 GePYI~Hpl~VA~IL---a~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
.+..-.|...||.+. +..... ......++..||+||+.|-
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~-~~d~~k~~~~aL~HDl~E~ 62 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGP-DLDIEKVVKMALFHDLPEA 62 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH--HC-HHHHHHHHHHTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHhHHhcc-cCCHHHHHHHHhhccchhh
Confidence 456678999988663 322210 0123468889999999983
No 110
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=39.40 E-value=30 Score=36.85 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=54.1
Q ss_pred cchhhhHHHHHHHHHHcCC---C-CCCChh-hHHHHhhhhcccccccCCHHHHHhHhcHHHHHHHHHhhhhhhhhHHHHH
Q 003318 124 DPYLTHCIHTGRILAMLIP---S-SGKRAV-DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 198 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~---~-~g~~D~-dtI~AALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gVTKls~i~~~~r~ 198 (830)
+..-.|...||.|..-++. . .+..|. .....||+||..|-..-+.-.=-+.+.++...++..|.+...-..+..
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~~i~~- 106 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTENFIKK- 106 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHh-
Confidence 3455788887765422211 1 112344 344889999999954221111113456666666666665432221110
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHhhcC-CccEEEehhhhHHhhhH
Q 003318 199 HRRINVNQGTLGHEEANDLRVMLLGMVD-DPRVVLIKLADRLHNMR 243 (830)
Q Consensus 199 ~rrk~~~~~~~~~~qaE~lRKmLLAma~-D~RVvLIKLADRLhNMR 243 (830)
....+-.+.+|.++.---+ .+-..+||.||.++-+-
T Consensus 107 ---------~iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 107 ---------EIPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp ---------HS-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred ---------hCCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 0112233456666553322 25688999999998763
No 111
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=39.19 E-value=31 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003318 601 GGRELLVAV----SFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpl----s~~L~~Gd~VeI~ts 624 (830)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 36 NGD--FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCE--EcCchhcccccCCCCCEEEEEee
Confidence 799 8886 688999999999864
No 112
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=38.92 E-value=29 Score=31.86 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=31.9
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCC--ce-----------------------EEECCEEeCCCccCCCCCEEEEe
Q 003318 783 EIMRLRSGSTAADAAMKVG--LEG--KL-----------------------VLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~--~~~--~~-----------------------~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+--.++.|+|+-++|=.|| +.- .+ ++.-|+ +|.+++||++.++
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK----~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGK----DYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCC----ceEeeCCeEEEEE
Confidence 3457899999999999998 211 11 244555 8999999999875
No 113
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=37.68 E-value=16 Score=33.25 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.6
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003318 601 GGRELLVAV----SFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpl----s~~L~~Gd~VeI~ts 624 (830)
||. +||= ++.|+.||.|||++.
T Consensus 55 Ng~--iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 55 NNQ--VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCE--EeCHHHcCcccCCCCCEEEEEEE
Confidence 899 8884 578999999999864
No 114
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=37.32 E-value=59 Score=40.63 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCC--------------ce-EEECCEEeC-CCccCCCCCEEEE
Q 003318 773 EVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEG--------------KL-VLVNGQLVL-PNTELKDGDIVEV 828 (830)
Q Consensus 773 ~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~--------------~~-~~VNg~lvp-l~~~L~~GD~VeI 828 (830)
+..+..|=+|+-+..|.|+|.+++|-+-| |.+ .| |-|||++++ -+|++.+|..|..
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred ceeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 34467888999999999999999999976 322 22 699999987 4899999998864
No 115
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=37.24 E-value=89 Score=26.25 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=40.7
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCC--ceEEECCEEeC-----CCccCCCCCEEEEe
Q 003318 774 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEG--KLVLVNGQLVL-----PNTELKDGDIVEVR 829 (830)
Q Consensus 774 ~v~VftP~G~i--~~Lp~GsT~~DfAy~i~----~~~--~~~~VNg~lvp-----l~~~L~~GD~VeI~ 829 (830)
.|+|=+++|+. ++++...|+.|+-.+|. +.. .....||++.. -++.+++|++|.++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 37888998885 56678999999988884 332 12356888766 34568899998875
No 116
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=37.00 E-value=35 Score=30.79 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.1
Q ss_pred CceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003318 588 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 588 ~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
..|+.+.+ |.. ++++++.|+.||.|.++..
T Consensus 51 ~~~v~~~~-----~~~--~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 51 NIVVNAAN-----NEF--LVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred cceEEeee-----cee--eccccccCCCCCEEEEeCC
Confidence 46666665 455 9999999999999999753
No 117
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=36.40 E-value=20 Score=40.19 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=26.1
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
++...|.+.||.+...+....|..+.+.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 4557899999876543321112234678899999998653
No 118
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=36.09 E-value=28 Score=30.08 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ +|+.++.|+.||.|+|+..
T Consensus 55 Ng~--~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 55 NGE--YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCe--EcCCCcccCCCCEEEEeCC
Confidence 799 8999999999999999753
No 119
>PRK00106 hypothetical protein; Provisional
Probab=35.90 E-value=26 Score=42.07 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=27.3
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 122 sGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
.|...+.|.++||.+...+....|......-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 366778999999876432221112223567799999998654
No 120
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=34.08 E-value=23 Score=41.23 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHcCCC--CCCCh-------hhHHHHhhhhcc
Q 003318 126 YLTHCIHTGRILAMLIPS--SGKRA-------VDTVVAGILHDV 160 (830)
Q Consensus 126 YI~Hpl~VA~ILa~l~~~--~g~~D-------~dtI~AALLHDv 160 (830)
-+.|++.|..+...+... ....+ ..+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 378999988776544321 00000 037899999997
No 121
>PRK12705 hypothetical protein; Provisional
Probab=33.65 E-value=33 Score=41.00 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=28.1
Q ss_pred cCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 122 sGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
.|...+.|.++||.+...+....|........||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 355678899999976543332223334457789999999763
No 122
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=32.26 E-value=34 Score=38.06 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.3
Q ss_pred CceEEECCEEeCCCccCCCCCEEEE
Q 003318 804 GKLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 804 ~~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
...++|||+.+..++.|+.||+|+|
T Consensus 44 ~G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 44 KGEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred cCCEEECCEEcCcccccCCCCEEEe
Confidence 4467999999999999999999987
No 123
>PRK12704 phosphodiesterase; Provisional
Probab=31.44 E-value=37 Score=40.68 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=25.5
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 123 GePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
|...+.|+++||.+...+...-|........||||||+=.
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 4556789999886643222211233445779999999754
No 124
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=30.75 E-value=39 Score=36.89 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.5
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 829 (830)
|..+-|+||.+.|- .+++++-||.+.|+
T Consensus 202 Ie~g~VkVN~k~v~~~s~~v~~GDliSir 230 (257)
T COG2302 202 IEKGKVKVNWKVVDKASYEVQEGDLISIR 230 (257)
T ss_pred HHcCceEEeeEEeccccceeccCCEEEEe
Confidence 77778999999999 99999999999886
No 125
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=30.49 E-value=80 Score=35.36 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.4
Q ss_pred cCCCCeEeC-CCCCCHHHHHHHhC--CCC-------------c-e-EEECCE--Ee-CCCccCCCCCEEEE
Q 003318 779 WPNGEIMRL-RSGSTAADAAMKVG--LEG-------------K-L-VLVNGQ--LV-LPNTELKDGDIVEV 828 (830)
Q Consensus 779 tP~G~i~~L-p~GsT~~DfAy~i~--~~~-------------~-~-~~VNg~--lv-pl~~~L~~GD~VeI 828 (830)
+=+|.-++. |.|.|.+|+|.+.| |.+ + | |.|+|+ +| .=.|+.++|-.|.-
T Consensus 72 ~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 72 FVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred EECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 349999999 99999999999987 222 1 2 689986 43 34788899988864
No 126
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=41 Score=37.20 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.8
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
..++|||+.|-.++.|+.||+|++-
T Consensus 37 g~v~vNg~~v~~~~~l~~gd~i~~~ 61 (289)
T COG0564 37 GRVRVNGKKVKPSYKLKPGDVVRIP 61 (289)
T ss_pred CCEEECCEEccCCeeeCCCCEEEEe
Confidence 3789999999999999999999874
No 127
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=29.59 E-value=91 Score=32.63 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHHHHhhcC--Cc-cccCcchhhhHHHHHHHH---HHcCCCCC--CChhhHHHHhhhhcccccc--cCC--HHHHHhH
Q 003318 107 AIAFAKRAHHG--QF-RKTGDPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVDDA--CES--LGSIEEE 174 (830)
Q Consensus 107 A~~fA~~aH~g--Q~-RksGePYI~Hpl~VA~IL---a~l~~~~g--~~D~dtI~AALLHDvVEDT--~~T--~eeI~~~ 174 (830)
...+-...|.| +. +..++....|-+.||.+- +......| ......+..||+||..|-- +++ .......
T Consensus 12 ~~~Lk~i~R~gw~~~g~~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~ 91 (193)
T COG1896 12 LSRLKDIPRTGWLLRGIWNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAG 91 (193)
T ss_pred HHHHHhhhccchhhcCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcch
Confidence 33344444533 22 335788888988877542 22111111 1234588899999999953 222 1222223
Q ss_pred hcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhh
Q 003318 175 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNM 242 (830)
Q Consensus 175 FG~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNM 242 (830)
.....-+..+.+.+.. + ....+=.+-+|.++- .++..+.+||.||.|..+
T Consensus 92 ~~~~~~e~e~~~~~~~-~---------------~~p~e~~~~~~~~~~--~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 92 LYKEEEEAEEAAIHLL-F---------------GLPEELLELFREYEK--RSSLEARIVKDADKLELL 141 (193)
T ss_pred HHHHHHHHHHHHHHcc-c---------------CCcHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHH
Confidence 3333333333333211 0 001111233444322 356788999999999887
No 128
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=28.91 E-value=57 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.9
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003318 804 GKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 804 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
...|+|||+.+-+..+++.||.|.|.
T Consensus 33 ~G~V~vnG~~~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 33 GGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_pred CCCEEECCEECCCCCccCCCCEEEEE
Confidence 34579999999999999999999874
No 129
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.46 E-value=42 Score=40.18 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=24.8
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 123 GePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
|...+.|.++||.+...+...-|........||||||+--
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3445789999987643222111222335668999999854
No 130
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=28.17 E-value=50 Score=28.27 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCeeEEEec---ccccCCCCeEEEcCC
Q 003318 601 GGRELLVAV---SFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpl---s~~L~~Gd~VeI~ts 624 (830)
||+ +++- ++.|+.||.|+|+..
T Consensus 49 N~~--~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 49 NGE--IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TTE--EEGGGTTTSBEETTEEEEEEES
T ss_pred CCE--EcCCccCCcCcCCCCEEEEECC
Confidence 899 9999 999999999999753
No 131
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=27.54 E-value=31 Score=32.36 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHh
Q 003318 278 AELEDLCFAVLQ 289 (830)
Q Consensus 278 ~ELEDLaF~~L~ 289 (830)
.||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 689999999977
No 132
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.78 E-value=48 Score=37.50 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCCceEEECCEEe
Q 003318 791 STAADAAMKVGLEGKLVLVNGQLV 814 (830)
Q Consensus 791 sT~~DfAy~i~~~~~~~~VNg~lv 814 (830)
+||-|.+.+|-+|..++.||--++
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceec
Confidence 689999999999999999998776
No 133
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.70 E-value=34 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.6
Q ss_pred EEEEcCCCC---eEeCCCCCCHHHH
Q 003318 775 VIVCWPNGE---IMRLRSGSTAADA 796 (830)
Q Consensus 775 v~VftP~G~---i~~Lp~GsT~~Df 796 (830)
+.-|+|.|| +..||.||||+-.
T Consensus 24 i~~f~p~~dkyf~lglptgstplg~ 48 (273)
T KOG3148|consen 24 INQFTPGGDKYFVLGLPTGSTPLGM 48 (273)
T ss_pred HhhcCCCCceEEEEecCCCCCchhH
Confidence 334677775 5789999999864
No 134
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=25.98 E-value=71 Score=33.68 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=30.5
Q ss_pred EeCCCCCCHHHHHHHhC----------CCC------ce-EEECCEEe-CCCccCCC-CC
Q 003318 785 MRLRSGSTAADAAMKVG----------LEG------KL-VLVNGQLV-LPNTELKD-GD 824 (830)
Q Consensus 785 ~~Lp~GsT~~DfAy~i~----------~~~------~~-~~VNg~lv-pl~~~L~~-GD 824 (830)
+..+.|.|.+|+..+|+ .++ .| ++|||+.+ .-.|++++ |.
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 34569999999999875 111 22 69999988 58888888 87
No 135
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=25.37 E-value=45 Score=37.88 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcCCccc--cCc---chhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003318 102 EQVQKAIAFAKRAHHGQFRK--TGD---PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161 (830)
Q Consensus 102 ~~l~kA~~fA~~aH~gQ~Rk--sGe---PYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvV 161 (830)
.+|-..-.|=+-.+..|.-- .++ .-++|.++|+.+-..+...-+....-+-+|||+||+=
T Consensus 34 drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 34 DRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 45555555555566666532 233 3479999999875443211111123455799999973
No 136
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=25.30 E-value=57 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ .++.++.|+.||.|+++..
T Consensus 57 N~~--~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 57 NEE--YTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCC
Confidence 789 8999999999999999753
No 137
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=24.56 E-value=40 Score=29.54 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=12.9
Q ss_pred eEEECCEEeCC-CccCCCCCEEEE
Q 003318 806 LVLVNGQLVLP-NTELKDGDIVEV 828 (830)
Q Consensus 806 ~~~VNg~lvpl-~~~L~~GD~VeI 828 (830)
.|+|||....= ..+|++||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 37999987654 568999999987
No 138
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.07 E-value=1.1e+02 Score=29.07 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CeeEEEecccccCCCCeEEEcCCC
Q 003318 602 GRELLVAVSFGLAASEVVADRRPS 625 (830)
Q Consensus 602 gr~~lVpls~~L~~Gd~VeI~ts~ 625 (830)
|| .|.++.+|+.||.|||.+.-
T Consensus 56 ~k--~~kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 56 SK--PVKLDDELHDGDRVEIYRPL 77 (99)
T ss_pred cc--ccCccccccCCCEEEEeccc
Confidence 67 89999999999999998764
No 139
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=23.70 E-value=2.6e+02 Score=23.98 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=39.7
Q ss_pred eEEEEcCCCCeE--eCCCCCCHHHHHHHhC----C--CC-c-eEEECCEEeCC-----CccCCCCCEEEEe
Q 003318 774 VVIVCWPNGEIM--RLRSGSTAADAAMKVG----L--EG-K-LVLVNGQLVLP-----NTELKDGDIVEVR 829 (830)
Q Consensus 774 ~v~VftP~G~i~--~Lp~GsT~~DfAy~i~----~--~~-~-~~~VNg~lvpl-----~~~L~~GD~VeI~ 829 (830)
.|+|-|+.|+.+ +++...|+.|+=..|. + .. . ....||+...= ++.+++|+.|-++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 478899999875 5667789999877774 4 22 1 24668887653 3678999988764
No 140
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=23.44 E-value=78 Score=37.13 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhcCCcccc--Cc---chhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 101 DEQVQKAIAFAKRAHHGQFRKT--GD---PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~Rks--Ge---PYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
..+|--.-.|-+-.++.|.=.. |. .-++|.++||.|-..+...-+....-+.+|||+||+=-
T Consensus 41 rdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 41 RARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred HHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 3567777777777888885432 32 23799999998764432211222234679999999743
No 141
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=23.15 E-value=66 Score=35.93 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.7
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 803 EGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 803 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
....++|||+.+ ..++.|+.||+|+|.
T Consensus 41 ~~G~V~VNg~~v~~~~~~v~~gD~I~v~ 68 (325)
T PRK11180 41 LDQRVLVNGKVINKPKEKVLGGEQVAID 68 (325)
T ss_pred HCCCEEECCEEccCCCcCcCCCCEEEEe
Confidence 344689999988 589999999999884
No 142
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=22.19 E-value=90 Score=27.47 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEECCEEeC--CCccCCCCCEEEEe
Q 003318 806 LVLVNGQLVL--PNTELKDGDIVEVR 829 (830)
Q Consensus 806 ~~~VNg~lvp--l~~~L~~GD~VeI~ 829 (830)
++.|||+.++ -.+.|++||++.|-
T Consensus 67 g~~vn~~~~~~~~~~~l~~gd~i~ig 92 (102)
T cd00060 67 GTFVNGQRVSPGEPVRLRDGDVIRLG 92 (102)
T ss_pred CeEECCEECCCCCcEECCCCCEEEEC
Confidence 5799999999 68899999999873
No 143
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=22.07 E-value=79 Score=28.46 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=19.6
Q ss_pred CCceEEECCEEeCC-CccCCCCCEEEE
Q 003318 803 EGKLVLVNGQLVLP-NTELKDGDIVEV 828 (830)
Q Consensus 803 ~~~~~~VNg~lvpl-~~~L~~GD~VeI 828 (830)
....|+|||..-.= ..+|.+||+|+|
T Consensus 35 ~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 35 AEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred HCCeEEECCeeeeccCCEeecCCEEEE
Confidence 33568999985443 357999999997
No 144
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=97 Score=35.64 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCceEEEEcCCCCeEe--CCCCCCHHHHHHH-hC-CCCceEEE-----CCEE--eCCCccCCCCCEEEEe
Q 003318 762 ANGNPDSVVPGEVVIVCWPNGEIMR--LRSGSTAADAAMK-VG-LEGKLVLV-----NGQL--VLPNTELKDGDIVEVR 829 (830)
Q Consensus 762 f~~~~k~~l~~~~v~VftP~G~i~~--Lp~GsT~~DfAy~-i~-~~~~~~~V-----Ng~l--vpl~~~L~~GD~VeI~ 829 (830)
|++-+. ++..--+++=-.+|+||+ +|.||- |||| || +.-+-.+| ||++ +..+-.|+.||++-|.
T Consensus 132 F~~~Lp-~I~~tp~~iGLgkGEImEI~vp~gSi---faYrhi~sI~qk~~RIvl~YRN~klll~~~slvlqp~D~lLVv 206 (471)
T COG3400 132 FISRLP-NIPSTPREIGLGKGEIMEIDVPFGSI---FAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHHhcC-CccccchhcccccceEEEEecCCCch---hhhhhhhhhhhheeEEEEEEECCEEEEeccceEecCCCEEEEe
No 145
>PTZ00258 GTP-binding protein; Provisional
Probab=21.43 E-value=52 Score=38.06 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=37.6
Q ss_pred ccCCCc-------eeeecCCceeEEEEEEEc------------cCCeeEEEecccccCCCCeEEEcCC
Q 003318 576 LKMGHP-------VIRVEGSNLLAAVIIRVE------------KGGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 576 Lp~G~t-------v~~~vG~~c~gAkV~~v~------------~ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
+|.|+| ||+.++-.-+-|+|++-+ .-|+..++--+|.++.||+|++..+
T Consensus 320 i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fn 387 (390)
T PTZ00258 320 IQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFN 387 (390)
T ss_pred eCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEec
Confidence 788877 787777777778885432 3475558999999999999999754
No 146
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.04 E-value=84 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCCCceEEEEcCCCCeEeCCCCCC
Q 003318 769 VVPGEVVIVCWPNGEIMRLRSGST 792 (830)
Q Consensus 769 ~l~~~~v~VftP~G~i~~Lp~GsT 792 (830)
++..+.++|.||+|+.+.+|.-..
T Consensus 2 ei~~~~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 2 EIKKKYAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred cCcCCEEEEEcCCCcEEEEeCCCC
Confidence 345778999999999999987655
No 147
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=4.9e+02 Score=29.10 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=40.2
Q ss_pred hhhHHhhhHhhhcCChHHHHHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Q 003318 235 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 289 (830)
Q Consensus 235 LADRLhNMRtL~~lp~ekq~~iA~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~ 289 (830)
+.-+.+|.--+...++++|.++..|++.+- +..-|+.++-..+--+.|++++
T Consensus 11 ~l~q~~~~~~~~t~ded~~~~~~~~~~~ll---s~~y~~~~~~a~~~t~ihr~v~ 62 (285)
T COG1578 11 LLRQAVNAVKLATDDEDLRSRIMSEALKLL---SEEYGESAVPAIAGTLIHREVY 62 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HhhhCcCCCcHHHHHHHHHHHH
Confidence 444555655566677999999999999874 4557888888888888998888
No 148
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=20.80 E-value=1.3e+02 Score=32.90 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhh-HHHHhhhhcc
Q 003318 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVD-TVVAGILHDV 160 (830)
Q Consensus 104 l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~d-tI~AALLHDv 160 (830)
|.+|+++....-...-.....|-|.|.+.+|+.+..-.+ +++ ...+||+||+
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~-----~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHP-----DPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHST-----T-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCC-----Ccchhhheehhccc
Confidence 667776665554332223457889999999988876533 244 4579999996
Done!