Query 003318
Match_columns 830
No_of_seqs 491 out of 2433
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1.1E-97 4E-102 823.5 22.8 354 99-562 23-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 5.5E-42 1.9E-46 359.6 8.8 112 413-533 73-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 5.5E-37 1.9E-41 317.5 9.0 153 413-574 44-216 (226)
4 3nqw_A CG11900; stringent resp 100.0 2.1E-33 7.1E-38 281.4 11.2 166 100-287 5-176 (179)
5 3nr1_A HD domain-containing pr 100.0 4.2E-32 1.4E-36 271.7 11.5 160 100-283 3-170 (178)
6 3hvz_A Uncharacterized protein 99.8 8.7E-20 3E-24 159.8 5.7 62 769-830 2-67 (78)
7 2eki_A DRG 1, developmentally- 99.2 3.4E-12 1.2E-16 114.8 4.9 58 773-830 10-86 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.0 2.5E-10 8.5E-15 97.0 5.7 56 775-830 3-62 (73)
9 3hvz_A Uncharacterized protein 98.9 2.9E-10 1E-14 99.5 2.1 52 568-626 9-70 (78)
10 1wwt_A Threonyl-tRNA synthetas 98.8 8.6E-09 2.9E-13 91.1 6.5 59 772-830 9-72 (88)
11 1wxq_A GTP-binding protein; st 98.6 1.6E-08 5.5E-13 112.4 3.3 58 773-830 318-394 (397)
12 2hj1_A Hypothetical protein; s 97.6 1.8E-05 6E-10 72.0 2.6 57 773-829 16-83 (97)
13 2l32_A Small archaeal modifier 97.6 3.5E-05 1.2E-09 66.6 4.4 47 783-830 13-61 (74)
14 2eki_A DRG 1, developmentally- 97.6 1.5E-05 5.1E-10 71.9 2.0 57 569-627 14-90 (93)
15 1rws_A Hypothetical protein PF 97.5 2.9E-05 9.9E-10 67.2 2.4 52 779-830 19-72 (77)
16 2k5p_A THis protein, thiamine- 97.5 8.1E-05 2.8E-09 64.9 4.4 52 779-830 4-64 (78)
17 2kl0_A Putative thiamin biosyn 97.4 0.00014 4.7E-09 62.7 4.7 51 779-830 4-60 (73)
18 1f0z_A THis protein; ubiquitin 97.4 0.00016 5.3E-09 60.6 4.7 52 779-830 4-61 (66)
19 1tyg_B YJBS; alpha beta barrel 97.4 0.0002 6.8E-09 63.8 5.6 53 778-830 23-82 (87)
20 2kmm_A Guanosine-3',5'-BIS(dip 97.2 0.00011 3.8E-09 61.9 2.2 52 568-626 4-65 (73)
21 1ryj_A Unknown; beta/alpha pro 97.2 0.00037 1.2E-08 59.2 5.1 51 780-830 9-65 (70)
22 2cu3_A Unknown function protei 97.0 0.00056 1.9E-08 57.0 4.8 51 779-830 3-59 (64)
23 1wwt_A Threonyl-tRNA synthetas 96.8 0.00043 1.5E-08 60.8 2.6 53 568-627 13-76 (88)
24 2q5w_D Molybdopterin convertin 96.6 0.0014 4.6E-08 55.9 4.1 48 783-830 18-72 (77)
25 1vjk_A Molybdopterin convertin 96.2 0.0039 1.3E-07 56.0 4.7 47 783-829 29-92 (98)
26 3po0_A Small archaeal modifier 96.2 0.0053 1.8E-07 53.8 5.2 46 784-829 21-83 (89)
27 1tke_A Threonyl-tRNA synthetas 96.2 0.0014 4.9E-08 67.0 1.8 52 569-627 4-65 (224)
28 1fm0_D Molybdopterin convertin 95.8 0.014 4.6E-07 50.1 5.8 42 788-829 23-75 (81)
29 1wxq_A GTP-binding protein; st 95.7 0.0013 4.6E-08 73.0 -0.8 45 576-625 345-396 (397)
30 2g1e_A Hypothetical protein TA 95.0 0.032 1.1E-06 48.6 5.8 47 784-830 18-85 (90)
31 4a9a_A Ribosome-interacting GT 94.9 0.01 3.6E-07 65.6 2.8 44 787-830 320-375 (376)
32 3rpf_C Molybdopterin convertin 93.2 0.1 3.5E-06 44.3 5.0 45 784-829 15-68 (74)
33 2dby_A GTP-binding protein; GD 92.2 0.15 5E-06 56.2 5.9 56 774-829 284-365 (368)
34 3dwg_C 9.5 kDa culture filtrat 92.2 0.17 5.8E-06 44.5 5.3 42 788-829 23-87 (93)
35 2l52_A Methanosarcina acetivor 90.8 0.22 7.4E-06 44.7 4.5 44 785-829 23-93 (99)
36 3dto_A BH2835 protein; all alp 90.2 0.34 1.2E-05 49.8 6.0 60 100-162 3-62 (223)
37 1tke_A Threonyl-tRNA synthetas 90.0 0.16 5.5E-06 51.7 3.3 27 804-830 35-61 (224)
38 1jal_A YCHF protein; nucleotid 89.7 0.24 8.1E-06 54.6 4.6 56 774-829 279-360 (363)
39 3b57_A LIN1889 protein; Q92AN1 88.5 0.37 1.3E-05 48.5 4.7 61 101-164 4-64 (209)
40 1v8c_A MOAD related protein; r 87.6 0.61 2.1E-05 46.0 5.5 46 784-830 17-82 (168)
41 2pjq_A Uncharacterized protein 86.6 0.86 2.9E-05 46.7 6.2 64 96-162 4-67 (231)
42 2qgs_A Protein Se1688; alpha-h 85.8 1.6 5.4E-05 44.5 7.6 60 101-163 4-64 (225)
43 2ohf_A Protein OLA1, GTP-bindi 85.4 0.49 1.7E-05 52.7 3.8 56 774-829 305-386 (396)
44 2qjl_A URM1, ubiquitin-related 85.2 0.78 2.7E-05 41.0 4.4 45 785-829 24-93 (99)
45 2hj1_A Hypothetical protein; s 82.5 0.34 1.2E-05 43.9 0.8 45 575-624 31-85 (97)
46 1ni3_A YCHF GTPase, YCHF GTP-b 82.1 0.88 3E-05 50.5 4.1 57 773-829 306-388 (392)
47 2k6p_A Uncharacterized protein 78.7 1.2 4.2E-05 38.9 3.1 24 806-829 27-50 (92)
48 1rws_A Hypothetical protein PF 77.8 0.75 2.6E-05 39.3 1.4 22 601-624 52-73 (77)
49 3djb_A Hydrolase, HD family; a 76.9 3.3 0.00011 42.4 6.1 59 101-162 4-62 (223)
50 2l32_A Small archaeal modifier 76.5 0.73 2.5E-05 39.5 1.0 42 575-624 16-62 (74)
51 2paq_A 5'-deoxynucleotidase YF 74.4 3.6 0.00012 41.5 5.5 40 123-162 29-74 (201)
52 1vj7_A Bifunctional RELA/SPOT; 73.1 0.71 2.4E-05 51.4 0.0 25 730-754 358-382 (393)
53 3gqs_A Adenylate cyclase-like 71.8 3.2 0.00011 37.2 4.0 24 805-828 69-92 (106)
54 1dm9_A Hypothetical 15.5 KD pr 71.0 2.3 7.7E-05 40.3 3.0 26 804-829 33-58 (133)
55 1ryj_A Unknown; beta/alpha pro 70.7 2.2 7.6E-05 35.7 2.5 22 601-624 45-66 (70)
56 1f0z_A THis protein; ubiquitin 70.3 1.9 6.5E-05 35.5 2.0 22 601-624 37-62 (66)
57 2k9x_A Tburm1, uncharacterized 68.5 3 0.0001 38.4 3.1 24 806-829 69-96 (110)
58 1tyg_B YJBS; alpha beta barrel 68.1 3.2 0.00011 36.7 3.1 21 601-623 58-82 (87)
59 3fm8_A Kinesin-like protein KI 67.8 3 0.0001 39.1 3.0 23 806-828 91-113 (124)
60 2k5p_A THis protein, thiamine- 65.4 2.2 7.7E-05 36.8 1.5 22 601-624 40-65 (78)
61 2kl0_A Putative thiamin biosyn 64.6 4 0.00014 34.7 2.9 22 601-624 36-61 (73)
62 2pq7_A Predicted HD superfamil 63.0 5.7 0.0002 39.8 4.3 55 103-160 14-68 (220)
63 4ejq_A Kinesin-like protein KI 63.0 4 0.00014 39.4 3.0 23 806-828 111-133 (154)
64 2q5w_D Molybdopterin convertin 59.9 6 0.0002 33.1 3.2 22 601-624 52-73 (77)
65 1wgk_A Riken cDNA 2900073H19 p 58.6 5.2 0.00018 36.9 2.8 24 806-829 75-102 (114)
66 1p9k_A ORF, hypothetical prote 57.5 4.1 0.00014 34.7 1.7 22 807-828 48-70 (79)
67 1c05_A Ribosomal protein S4 de 57.0 5.5 0.00019 38.7 2.8 25 805-829 76-101 (159)
68 3kh1_A Predicted metal-depende 55.8 15 0.00052 37.1 5.9 62 101-162 7-79 (200)
69 2cu3_A Unknown function protei 55.3 10 0.00035 30.9 3.8 22 601-624 35-60 (64)
70 2vqe_D 30S ribosomal protein S 55.1 6 0.0002 40.3 2.8 25 805-829 124-149 (209)
71 2pie_A E3 ubiquitin-protein li 55.0 14 0.00048 34.7 5.1 24 805-828 75-100 (138)
72 4egx_A Kinesin-like protein KI 54.7 6.8 0.00023 39.0 3.1 22 807-828 142-163 (184)
73 1wln_A Afadin; beta sandwich, 53.6 5.5 0.00019 36.5 2.0 24 805-828 80-103 (120)
74 4h87_A Kanadaptin; FHA domain 53.3 8.3 0.00028 36.2 3.2 24 805-828 94-119 (130)
75 2o08_A BH1327 protein; putativ 52.7 4.8 0.00016 39.5 1.6 38 125-162 18-55 (188)
76 3po8_A RV0020C protein, putati 52.7 6.3 0.00021 34.8 2.2 23 805-828 65-87 (100)
77 3ccg_A HD superfamily hydrolas 52.3 4.9 0.00017 39.5 1.6 37 126-162 20-56 (190)
78 2ogi_A Hypothetical protein SA 49.8 5.7 0.00019 39.4 1.6 39 125-163 26-64 (196)
79 2csw_A Ubiquitin ligase protei 49.3 13 0.00046 35.1 4.0 24 805-828 83-108 (145)
80 3hx1_A SLR1951 protein; P74513 48.1 7.6 0.00026 36.4 2.1 23 805-828 82-104 (131)
81 2ibn_A Inositol oxygenase; red 46.6 17 0.00059 37.9 4.5 53 104-161 38-91 (250)
82 2jqj_A DNA damage response pro 45.8 8.8 0.0003 36.6 2.2 24 805-828 87-111 (151)
83 1fm0_D Molybdopterin convertin 45.2 15 0.00051 30.8 3.3 22 601-624 56-77 (81)
84 2gz4_A Hypothetical protein AT 44.8 19 0.00066 36.6 4.6 37 124-163 54-90 (207)
85 2cqz_A 177AA long hypothetical 44.6 10 0.00035 37.2 2.5 39 124-163 31-75 (177)
86 3bbn_D Ribosomal protein S4; s 44.4 10 0.00034 38.5 2.4 28 802-829 111-139 (201)
87 2xt9_B Putative signal transdu 44.3 10 0.00035 34.4 2.2 23 805-828 73-95 (115)
88 4dmb_A HD domain-containing pr 43.0 28 0.00096 35.3 5.5 39 124-163 44-82 (204)
89 1gxc_A CHK2, CDS1, serine/thre 41.7 12 0.00041 35.7 2.4 24 805-828 103-128 (149)
90 1vjk_A Molybdopterin convertin 40.9 17 0.00058 32.0 3.1 22 601-624 73-94 (98)
91 2dqb_A Deoxyguanosinetriphosph 40.9 11 0.00038 41.6 2.3 90 61-161 15-111 (376)
92 1lgp_A Cell cycle checkpoint p 40.6 9.4 0.00032 34.5 1.4 25 805-829 68-94 (116)
93 2kb3_A Oxoglutarate dehydrogen 39.8 11 0.00038 35.9 1.8 22 806-828 109-130 (143)
94 1g6g_A Protein kinase RAD53; b 39.5 15 0.0005 34.0 2.6 24 805-828 79-104 (127)
95 1r21_A Antigen KI-67; beta san 39.2 11 0.00039 34.7 1.8 24 805-828 75-98 (128)
96 1uht_A Expressed protein; FHA 39.2 9.6 0.00033 34.6 1.2 24 805-828 76-101 (118)
97 3gw7_A Uncharacterized protein 39.0 19 0.00064 37.2 3.5 37 127-163 27-63 (239)
98 3kt9_A Aprataxin; FHA domain, 37.5 15 0.0005 33.5 2.1 23 807-829 66-90 (102)
99 3po0_A Small archaeal modifier 37.4 24 0.00082 30.2 3.5 22 601-624 64-85 (89)
100 3els_A PRE-mRNA leakage protei 36.7 12 0.00042 36.2 1.6 24 805-828 117-142 (158)
101 1dmz_A Protein (protein kinase 36.7 11 0.00037 36.5 1.2 25 804-828 82-108 (158)
102 3r8n_D 30S ribosomal protein S 36.5 4.7 0.00016 41.1 -1.4 26 804-829 119-145 (205)
103 1mzk_A Kinase associated prote 36.4 13 0.00046 34.8 1.8 24 805-828 76-109 (139)
104 1g3g_A Protien kinase SPK1; FH 36.0 19 0.00065 34.9 2.8 24 805-828 107-132 (164)
105 3oun_A Putative uncharacterize 33.4 18 0.00062 35.2 2.2 23 805-828 127-149 (157)
106 1qu5_A Protein kinase SPK1; FH 33.1 13 0.00045 36.9 1.2 24 805-828 107-132 (182)
107 2kfu_A RV1827 PThr 22; FHA dom 32.7 18 0.0006 35.3 2.0 23 805-828 117-139 (162)
108 3elv_A PRE-mRNA leakage protei 31.6 17 0.00059 37.0 1.8 24 805-828 164-189 (205)
109 3u7z_A Putative metal binding 29.9 41 0.0014 30.5 3.8 23 807-829 71-96 (101)
110 2hek_A Hypothetical protein; p 28.4 19 0.00066 39.5 1.6 39 125-163 50-89 (371)
111 2bps_A YUKD protein; ubiquitin 28.2 11 0.00039 32.9 -0.2 21 809-829 61-81 (81)
112 2g1e_A Hypothetical protein TA 28.1 32 0.0011 29.3 2.6 22 601-624 61-86 (90)
113 1rm6_C 4-hydroxybenzoyl-COA re 27.4 43 0.0015 32.5 3.7 41 775-815 4-59 (161)
114 1ndd_A NEDD8, protein (ubiquit 26.1 2E+02 0.0068 22.8 7.1 56 774-829 2-70 (76)
115 1nyr_A Threonyl-tRNA synthetas 25.9 18 0.0006 42.4 0.7 46 575-627 15-67 (645)
116 3tm8_A BD1817, uncharacterized 25.8 26 0.00089 37.5 2.0 40 122-161 162-206 (328)
117 1v9f_A Ribosomal large subunit 25.5 15 0.0005 39.3 0.0 28 802-829 39-67 (325)
118 1qf6_A THRRS, threonyl-tRNA sy 24.0 20 0.00067 42.2 0.6 45 576-627 14-65 (642)
119 2ff4_A Probable regulatory pro 23.6 29 0.001 37.7 1.9 17 384-400 223-239 (388)
120 3a9j_A Ubiquitin; protein comp 22.9 2.5E+02 0.0085 22.2 7.1 56 774-829 2-70 (76)
121 3rpf_C Molybdopterin convertin 22.8 55 0.0019 27.1 3.1 22 601-624 48-70 (74)
122 2jpe_A Nuclear inhibitor of pr 22.2 20 0.00068 33.7 0.2 24 805-828 100-125 (140)
123 3va4_A Mediator of DNA damage 22.0 35 0.0012 32.0 1.9 24 805-828 89-116 (132)
124 3dwg_C 9.5 kDa culture filtrat 21.6 63 0.0022 27.8 3.3 22 601-624 64-89 (93)
125 1nyr_A Threonyl-tRNA synthetas 21.3 39 0.0013 39.4 2.5 26 805-830 38-63 (645)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.1e-97 Score=823.52 Aligned_cols=354 Identities=38% Similarity=0.610 Sum_probs=280.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhcHH
Q 003318 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE 178 (830)
Q Consensus 99 ~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~~ 178 (830)
.+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++ |.++++||||||+||||++|.++|++.||++
T Consensus 23 ~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~ 97 (393)
T 1vj7_A 23 TDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGKD 97 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcC-----CHHHHHHHHhhhHHhcCCCCHHHHHHHhCHH
Confidence 45678999999999999999999999999999999999999874 6899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHHHHHHHH
Q 003318 179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 258 (830)
Q Consensus 179 VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~ 258 (830)
||.||+||||++++++. .....|+|++||||+||++|+||++||||||||||||+..+|+++|+++|+
T Consensus 98 Va~lV~gvTk~~~~~~~------------~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~ 165 (393)
T 1vj7_A 98 VRDIVDGVTKLGKVEYK------------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISR 165 (393)
T ss_dssp HHHHHHHHHHHC--------------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHH
T ss_pred HHHHHHHHHhcccCCcc------------cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHH
Confidence 99999999999887541 112458999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhhhhcccCCCCcCccccccccccCCCCCcccccCCCCcccchhhhhh
Q 003318 259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVL 338 (830)
Q Consensus 259 ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~~~~~~~~~w~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 338 (830)
||++||||||||||||+||||||||||+||+ |+.|+
T Consensus 166 Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~--------------p~~y~------------------------------ 201 (393)
T 1vj7_A 166 ETMEIYAPLAHRLGISRIKWELEDLAFRYLN--------------ETEFY------------------------------ 201 (393)
T ss_dssp HHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC--------------HHHHH------------------------------
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhcccc--------------hhHHH------------------------------
Confidence 9999999999999999999999999999999 33443
Q ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEee
Q 003318 339 SMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 418 (830)
Q Consensus 339 ~~k~ll~~v~~~d~~~~r~~r~~~i~~~~~~~~~~~~~~v~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~ 418 (830)
.|+.+++ ..|.+|+.+++++. ..|++.|.+ .|+.+.|+||+
T Consensus 202 ~i~~~l~--------~~r~~r~~~i~~i~----------------------~~l~~~L~~---------~gi~~~v~~R~ 242 (393)
T 1vj7_A 202 KISHMMN--------EKRREREALVDDIV----------------------TKIKSYTTE---------QGLFGDVYGRP 242 (393)
T ss_dssp HHHHHHH--------HTHHHHHHHHHHHH----------------------HHHHHHHHT---------TTCCCEEEECC
T ss_pred HHHHHHH--------HHHHHHHHHHHHHH----------------------HHHHHHHHh---------cCCceEEEEEe
Confidence 3445554 36888999988775 134455554 37788999999
Q ss_pred cChhHHHHHHHhcCCCCCcccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCCCCCCCceeEE
Q 003318 419 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 498 (830)
Q Consensus 419 K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~nGYqSLHt 498 (830)
|++||||+||+||+.+|++|+|++||||||++ +.|||.++|+||+.|+|+|++|||||++||+||||||||
T Consensus 243 K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~ 313 (393)
T 1vj7_A 243 KHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHT 313 (393)
T ss_dssp CCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEE
T ss_pred CChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEE
Confidence 99999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCccccccccc------cchHHHhccCCCCCCCC
Q 003318 499 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDH 562 (830)
Q Consensus 499 ~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~ 562 (830)
+|.+|.| ++||||||..||.|||+||||||+||++.......+.++ ++|.+|++...++.||+
T Consensus 314 ~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 314 TVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp EEECSSS-EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-----------
T ss_pred EEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999 999999999999999999999999998643210111221 34566676666666765
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=5.5e-42 Score=359.61 Aligned_cols=112 Identities=29% Similarity=0.345 Sum_probs=105.7
Q ss_pred EEEEeecChhHHHHHHHhcCCCCC----cccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCC
Q 003318 413 TLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNP 488 (830)
Q Consensus 413 ~I~gR~K~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~P 488 (830)
.|+||+|+++||++||+|++.+++ +|+|++||||||++ +.|||.++++||+.|.|.|.+++|||++|
T Consensus 73 ~V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~~~KDYIa~P 143 (255)
T 3l9d_A 73 FVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVIQERDYINNL 143 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEEEEEEESCC-
T ss_pred eEEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC---------HHHHHHHHHHHHhcCCCceeeeeccccCC
Confidence 699999999999999999999987 79999999999985 78999999999999999999999999999
Q ss_pred CCCCCceeEEEEE-------cCCCcEEEEEEecchhHHHHHhhhhhhhcccc
Q 003318 489 KPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 533 (830)
Q Consensus 489 K~nGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~ 533 (830)
|+|||||||++|. ++.|.++||||||..||.|||+||++||+|+.
T Consensus 144 K~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 144 KPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999998 45678999999999999999999999999985
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=5.5e-37 Score=317.50 Aligned_cols=153 Identities=26% Similarity=0.315 Sum_probs=122.7
Q ss_pred EEEEeecChhHHHHHHHhcCCCCC----cccceeEEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCcccccccccccCC
Q 003318 413 TLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNP 488 (830)
Q Consensus 413 ~I~gR~K~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~P 488 (830)
.|+||+|+++||++||+|++.+++ +|+|++|+||||++ +.|||.++++||+.|.|.|.++||||++|
T Consensus 44 ~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~i~~~~~~~~~~~kDyI~~P 114 (226)
T 2be3_A 44 FVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDILHKRQDMRIIQERDYITHR 114 (226)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHHHHTCSSEEEEEEEETTTTC
T ss_pred eEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC---------HHHHHHHHHHHHhccCCceeeecchhhcC
Confidence 699999999999999999999998 99999999999985 78999999999999999999999999999
Q ss_pred CCCCCceeEEEEE-------cCCCcEEEEEEecchhHHHHHhhhhhhhcccccCCcc--cc-------ccccccchHHHh
Q 003318 489 KPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL--QS-------ISSMDESDIEAS 552 (830)
Q Consensus 489 K~nGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~--~~-------~~~~~~~l~~~~ 552 (830)
|+||||||||+|. ++.|.++||||||..||.|||+||++||+||++.... .. ...+++++.+++
T Consensus 115 K~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~ 194 (226)
T 2be3_A 115 KASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIR 194 (226)
T ss_dssp CTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 5668899999999999999999999999998643211 00 112334455666
Q ss_pred ccCCCCCCCCCccccccccccc
Q 003318 553 SSLSKDTDDHNPLDTDLFQKYS 574 (830)
Q Consensus 553 ~~~~~~~e~~~~~~~dvfTPkg 574 (830)
+.+.+..+|++.++.++|..-|
T Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~ 216 (226)
T 2be3_A 195 DDIQEAQALFDPLSRKLNDGVG 216 (226)
T ss_dssp HHHHHHHHHCCC----------
T ss_pred HHHhhhHHHHHHhhHHHhhhcc
Confidence 6665667888888888875433
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-33 Score=281.40 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHHHHhhcCCccc--cCcchhhhHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhc
Q 003318 100 NDEQVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (830)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~Rk--sGePYI~Hpl~VA~ILa-~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (830)
+.+.+.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++++ .|.++++||||||+||||.+|.++|++.||
T Consensus 5 d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~----~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG 80 (179)
T 3nqw_A 5 PSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI----TDEGVLMAALLHDVVEDTDASFEDVEKLFG 80 (179)
T ss_dssp CCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCC----CCHHHHHHHHTTTHHHHSSCCHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 4678999999999999999998 59999999999999999 6543 268999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHH-HHH
Q 003318 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK-ARA 255 (830)
Q Consensus 177 ~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ek-q~~ 255 (830)
++|+.||+||||++.+++..+ ...|.+++|+ .|+||++||||||+||||++..+|+++ ...
T Consensus 81 ~~Va~lV~gvtk~~~~~~~~~------------~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 142 (179)
T 3nqw_A 81 PDVCGLVREVTDDKSLEKQER------------KRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQE 142 (179)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHH
T ss_pred HHHHHHHHHHHhccccCHHHH------------HHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHH
Confidence 999999999999988764321 1347788876 799999999999999999999987764 334
Q ss_pred HHHhhHHHHHHHHHHh--ChHHHHHHHHHHHHHH
Q 003318 256 VAQETLLIWCSLASRL--GLWALKAELEDLCFAV 287 (830)
Q Consensus 256 iA~ETl~IYaPLA~RL--Gi~~iK~ELEDLaF~~ 287 (830)
-+++....|.++++.| |--.+..+|.++.-+|
T Consensus 143 r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 143 RRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4567788888888888 6678999999987665
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=4.2e-32 Score=271.74 Aligned_cols=160 Identities=29% Similarity=0.398 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHhhcCCcccc--CcchhhhHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHhHhc
Q 003318 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (830)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~Rks--GePYI~Hpl~VA~ILa-~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG 176 (830)
+.+++.+|+.||.++|.||+|++ |+|||.||++||.||+ +++. .|.++++||||||+||||++|.++|++.||
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~----~d~~~i~AALLHDvvEDt~~t~e~i~~~FG 78 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI----TDIVVLQAALLHDTVEDTDTTLDEVELHFG 78 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCC----CCHHHHHHHHHTTHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 45789999999999999999987 9999999999999995 5542 378999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHhhhHhhhcCChHH----
Q 003318 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK---- 252 (830)
Q Consensus 177 ~~VA~LV~gVTKls~i~~~~r~~rrk~~~~~~~~~~qaE~lRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ek---- 252 (830)
++|+.||+||||++.+++..+ ...|.+++| ..|+||++||||||+||||++..++|+.
T Consensus 79 ~~Va~lV~gvTk~~~~~~~~~------------~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 140 (178)
T 3nr1_A 79 AQVRRLVEEVTDDKTLPKLER------------KRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEH 140 (178)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHH
T ss_pred HHHHHHHHHHHhccccchhhH------------HHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCccccCHH
Confidence 999999999999987754321 124667665 5899999999999999999999886553
Q ss_pred -HHHHHHhhHHHHHHHHHHhChHHHHHHHHHH
Q 003318 253 -ARAVAQETLLIWCSLASRLGLWALKAELEDL 283 (830)
Q Consensus 253 -q~~iA~ETl~IYaPLA~RLGi~~iK~ELEDL 283 (830)
..+|.+|...|..-|.+ +--.+...|.++
T Consensus 141 r~~~Y~~~~~~v~~~l~~--~~~~l~~~~~~~ 170 (178)
T 3nr1_A 141 RVQEYFEWAAQVVKGLQG--TNRQLEEALKHL 170 (178)
T ss_dssp HHHHHHHHHHHHHHHHCS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CCHHHHHHHHHH
Confidence 55677777776665422 333444555544
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.78 E-value=8.7e-20 Score=159.83 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=55.3
Q ss_pred CCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 769 VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 769 ~l~~~~v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
|||+++||||||+|+++.||.||||+||||+|| ++.++ ++|||++|||+|+|++||+|||+|
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 789999999999999999999999999999999 76665 699999999999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=114.79 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=51.0
Q ss_pred ceEEEEc-CCCCe------EeC-CCCCCHHHHHHHhC--CCCce--EE-------ECCEEeCCCccCCCCCEEEEeC
Q 003318 773 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVG--LEGKL--VL-------VNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 773 ~~v~Vft-P~G~i------~~L-p~GsT~~DfAy~i~--~~~~~--~~-------VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+-|.||| |+|+. +-| |.|||+.||||+|| ++..+ |. +|||.|+++|+|+|||+|+|++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEe
Confidence 4688999 99985 889 99999999999999 77654 44 4999999999999999999974
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.02 E-value=2.5e-10 Score=96.98 Aligned_cols=56 Identities=43% Similarity=0.478 Sum_probs=50.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 775 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 775 v~VftP~G~i~~Lp~GsT~~DfAy~i~--~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+.|+.|+|+.+.+|.|+|+.|+|+.++ ++.++ ++|||+++|++++|++||.|||+|
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 679999999999999999999999997 44443 599999999999999999999985
No 9
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.91 E-value=2.9e-10 Score=99.53 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=47.0
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003318 568 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 626 (830)
Q Consensus 568 dvfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~ 626 (830)
.+|||+|+ ||.|+|+.+| +|++|+||+| ||+ +|||+++|++||+|||+|+++
T Consensus 9 ~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 9 FVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----CCE--EcCCCcccCCCCEEEEEccCc
Confidence 37899995 7999998876 7899999999 999 999999999999999999874
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.76 E-value=8.6e-09 Score=91.06 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=52.5
Q ss_pred CceEEEEcCCCCeEeCCC-CCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 772 GEVVIVCWPNGEIMRLRS-GSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 772 ~~~v~VftP~G~i~~Lp~-GsT~~DfAy~i~--~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
...+-|..|+|+++++|. |+|+.|||+.|| ++.++ ++|||++++|+++|++|+.||++|
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 355778889999999998 999999999997 55554 699999999999999999999986
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=1.6e-08 Score=112.39 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=52.6
Q ss_pred ceEEEEc---------CCC----CeEeCCCCCCHHHHHHHhC--CCCce--E--EECCEEeCCCccCCCCCEEEEeC
Q 003318 773 EVVIVCW---------PNG----EIMRLRSGSTAADAAMKVG--LEGKL--V--LVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 773 ~~v~Vft---------P~G----~i~~Lp~GsT~~DfAy~i~--~~~~~--~--~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+-|+||| |+| +.+.||.||||.||||+|| ++..+ | .+||+.|+++|+|+|||+|+|+|
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 5788999 999 9999999999999999999 65554 5 66999999999999999999986
No 12
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=97.64 E-value=1.8e-05 Score=72.03 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCe--EeCCCCCCHHHHHHHhCCCC---------ceEEECCEEeCCCccCCCCCEEEEe
Q 003318 773 EVVIVCWPNGEI--MRLRSGSTAADAAMKVGLEG---------KLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 773 ~~v~VftP~G~i--~~Lp~GsT~~DfAy~i~~~~---------~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
+++|---.+..+ +++|.|+|+.|+.-+.|+.. ..+-|||++||+++.|++||+|||.
T Consensus 16 ~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 16 EIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred EEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 445543333333 47899999999999998422 3479999999999999999999996
No 13
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.64 E-value=3.5e-05 Score=66.58 Aligned_cols=47 Identities=28% Similarity=0.262 Sum_probs=41.6
Q ss_pred CeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003318 783 EIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
..+++|.|+|..|+.-.+|+.... +.|||++||.+..+. ||.|||++
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSC-CCCEEECS
T ss_pred eeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCC-CCEEEEEE
Confidence 448999999999999999966654 699999999999886 99999984
No 14
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=97.63 E-value=1.5e-05 Score=71.85 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=45.3
Q ss_pred ccc-cccc---------c-cCCCceee-------ecCCceeEEEEEE--EccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 569 LFQ-KYSS---------L-KMGHPVIR-------VEGSNLLAAVIIR--VEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 569 vfT-Pkg~---------L-p~G~tv~~-------~vG~~c~gAkV~~--v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
||| |+|. | |.|+||.+ .+|.+|..|.|-. +.+||+ -|+++++|++||+|+|++.+.+
T Consensus 14 VYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q--rVgldh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 14 IYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ--KVGKDHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp EEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE--EECSSCCCCSSEEECEEECCSC
T ss_pred EEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCE--ECCCCcEecCCCEEEEEeCCCC
Confidence 567 7773 6 88988554 5999999999722 344788 7999999999999999987654
No 15
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=97.54 E-value=2.9e-05 Score=67.18 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=45.8
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
..+|+.+++|.|+|..|+--.+++... .+-|||++||.+++|++||.|+|+.
T Consensus 19 ~~n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 19 RNIEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred ccCCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 568889999999999999999985543 3799999999999999999999873
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.47 E-value=8.1e-05 Score=64.93 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=46.2
Q ss_pred cCCCCeEeCC--CCCCHHHHHHHhCCC-Cce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLR--SGSTAADAAMKVGLE-GKL--VLVNGQLVLPN----TELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp--~GsT~~DfAy~i~~~-~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 830 (830)
+=||+-+++| .|+|..|+.-.+++. .+. +-|||.+||-+ |.|++||.|||++
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 4479999999 999999999999977 543 69999999997 9999999999985
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.38 E-value=0.00014 Score=62.67 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=44.7
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 830 (830)
+=||+-+++ .|+|..|+.-.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 347999999 999999999999976653 69999999995 8999999999985
No 18
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.36 E-value=0.00016 Score=60.62 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=45.4
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCC----CccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~--~~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
+=||+-+.+|.|+|..|+--.+++... .+-|||++||. +++|++||.|+|++
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 448999999999999999999985543 36999999998 89999999999973
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.36 E-value=0.0002 Score=63.85 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=46.6
Q ss_pred EcCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003318 778 CWPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 778 ftP~G~i~~Lp~G-sT~~DfAy~i~~~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
++=||+-+++|.| +|..|+--.+++.... +-|||++||. +++|++||.|||++
T Consensus 23 I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 23 LQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 5669999999998 9999999999965543 6999999998 79999999999974
No 20
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.22 E-value=0.00011 Score=61.90 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=43.5
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003318 568 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 626 (830)
Q Consensus 568 dvfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~ 626 (830)
.++.|.|. +|.|.|+.++ ++.++++|+| ||+ ++|+++.|+.||.|||+|...
T Consensus 4 ~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----Ng~--lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 4 MVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----NHK--LVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----TTE--ECCTTCBCCSSSBEEEEECCC
T ss_pred EEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEE-----CCE--EeCCCcCcCCCCEEEEEECCC
Confidence 45667774 7999998765 3577999999 999 999999999999999998653
No 21
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.18 E-value=0.00037 Score=59.21 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCCCe----EeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003318 780 PNGEI----MRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 780 P~G~i----~~Lp~GsT~~DfAy~i~~~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
=||+. +++|.|+|..|+--.+++... .+-|||.+||.++.|++||.|+|++
T Consensus 9 vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 9 VITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEe
Confidence 35666 999999999999999985443 3699999999999999999999973
No 22
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=97.05 E-value=0.00056 Score=56.95 Aligned_cols=51 Identities=41% Similarity=0.591 Sum_probs=43.9
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCC----ccCCCCCEEEEeC
Q 003318 779 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPN----TELKDGDIVEVRV 830 (830)
Q Consensus 779 tP~G~i~~Lp~GsT~~DfAy~i~~~~~--~~~VNg~lvpl~----~~L~~GD~VeI~t 830 (830)
+=||+-+++ .|+|..|+--.+++... .+-|||++||.+ ++|++||.|+|++
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 348999999 99999999999986554 369999999976 9999999999973
No 23
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.85 E-value=0.00043 Score=60.79 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=43.9
Q ss_pred ccccccccc---cC-CCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 568 DLFQKYSSL---KM-GHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 568 dvfTPkg~L---p~-G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
.+.-|.|.. |. |.|+.++ ++.+|++|+| ||+ +++|+++|+.|+.||++|...+
T Consensus 13 ~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKV-----NNV--VWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp EEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEE-----SSS--EECSSSCCCSSEEEEECSSCCS
T ss_pred EEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEE-----CCE--EECCCcCcCCCCEEEEEeCCCH
Confidence 345577754 86 8887765 5788999999 999 9999999999999999998754
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=96.63 E-value=0.0014 Score=55.92 Aligned_cols=48 Identities=21% Similarity=0.110 Sum_probs=39.3
Q ss_pred CeEeCCCCCCHHHHHHHhCC-----CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003318 783 EIMRLRSGSTAADAAMKVGL-----EGK--LVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~~-----~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
.-+++|.|+|..|.--.++. ..- .+-|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 34678999999998777752 222 5799999999999999999999973
No 25
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.22 E-value=0.0039 Score=55.98 Aligned_cols=47 Identities=34% Similarity=0.446 Sum_probs=38.7
Q ss_pred CeEeCCCCCCHHHHHHHhCC----------------CC-ceEEECCEEeCCCccCCCCCEEEEe
Q 003318 783 EIMRLRSGSTAADAAMKVGL----------------EG-KLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 783 ~i~~Lp~GsT~~DfAy~i~~----------------~~-~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
..+++|.|+|..|.--.+.. .. ..+.|||++|+++++|++||.|+|+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 45678999999998777641 12 3379999999999999999999997
No 26
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.17 E-value=0.0053 Score=53.81 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=38.2
Q ss_pred eEeCCCCCCHHHHHHHhC-----CC------------CceEEECCEEeCCCccCCCCCEEEEe
Q 003318 784 IMRLRSGSTAADAAMKVG-----LE------------GKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~-----~~------------~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
.+++|.|+|+.|.--.+. +. ...+.|||+.|+++++|++||.|.|+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 468999999999877764 11 13579999999999999999999987
No 27
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=96.17 E-value=0.0014 Score=67.02 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=45.1
Q ss_pred ccccccc---ccCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 569 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 569 vfTPkg~---Lp~G~tv~~~-------vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
+.+|+|. +|.|.|+.++ ++.+|++|+| ||+ +++|+++|++|+.||++|...+
T Consensus 4 I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~~~~ve~it~~~~ 65 (224)
T 1tke_A 4 ITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (224)
T ss_dssp EECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEE-----TTE--EEETTCCBCSCEEEEEECTTSH
T ss_pred EEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEE-----CCE--EeccceEcCCCCeEEEEecCch
Confidence 4567884 7999997766 5788999999 999 9999999999999999998764
No 28
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.77 E-value=0.014 Score=50.05 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHhCC-----------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003318 788 RSGSTAADAAMKVGL-----------EGKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 788 p~GsT~~DfAy~i~~-----------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
|.|+|+.|.--.++. +...+-|||++++++++|++||.|+|+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 688999998777751 223479999999999999999999997
No 29
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.74 E-value=0.0013 Score=72.95 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=36.7
Q ss_pred ccCCCc-------eeeecCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003318 576 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 625 (830)
Q Consensus 576 Lp~G~t-------v~~~vG~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~ 625 (830)
||.|+| ||+.+|+.|++|.- ..||+ .|+++|.|++||+|+|+|++
T Consensus 345 l~~G~t~~d~a~~iH~d~~~~f~~a~~---~~~~~--~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 345 MKKGSTPRDLAFKVHTDLGKGFLYAIN---ARTKR--RVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp EETTCCHHHHHHHHCHHHHHTEEEEEE---TTTCS--BCCTTCCCCTTEEEEEEEC-
T ss_pred eCCCCCHHHHHHHHhHHHHhhhhhhHH---hcCCE--EcCCCccccCCCEEEEEeCC
Confidence 688988 56669999999941 12788 68999999999999999875
No 30
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=95.01 E-value=0.032 Score=48.57 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=37.6
Q ss_pred eEeCCCCCCHHHHHHHhC--C---------------CCceEEECCEEeC----CCccCCCCCEEEEeC
Q 003318 784 IMRLRSGSTAADAAMKVG--L---------------EGKLVLVNGQLVL----PNTELKDGDIVEVRV 830 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~--~---------------~~~~~~VNg~lvp----l~~~L~~GD~VeI~t 830 (830)
-+++|.|+|+.|.--.+. . ....+-|||+.++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 456788999999777664 1 2334799999998 899999999999973
No 31
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.01 Score=65.58 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=35.2
Q ss_pred CCCC-CCHHHHHHHhC----CCCce-------EEECCEEeCCCccCCCCCEEEEeC
Q 003318 787 LRSG-STAADAAMKVG----LEGKL-------VLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 787 Lp~G-sT~~DfAy~i~----~~~~~-------~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
+++| ||+-|||..|| .+-.. +|-+||.|-.+|.|+|||||+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 3445 99999999999 22222 466889999999999999999975
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.17 E-value=0.1 Score=44.29 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred eEeCCCCCCHHHHHHHhCCC--------CceEEECCEE-eCCCccCCCCCEEEEe
Q 003318 784 IMRLRSGSTAADAAMKVGLE--------GKLVLVNGQL-VLPNTELKDGDIVEVR 829 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~~~--------~~~~~VNg~l-vpl~~~L~~GD~VeI~ 829 (830)
.+++ .|+|..|.--.++.. .-.+-|||+. +..+++|++||.|+|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4667 899999987777522 2346999999 7799999999999997
No 33
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.19 E-value=0.15 Score=56.18 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=42.3
Q ss_pred eEEEEc--CC-CCeEeCCCCCCHHHHHHHhC----CCCceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003318 774 VVIVCW--PN-GEIMRLRSGSTAADAAMKVG----LEGKLVLV-----------------NG--QLVLPNTELKDGDIVE 827 (830)
Q Consensus 774 ~v~Vft--P~-G~i~~Lp~GsT~~DfAy~i~----~~~~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 827 (830)
-+.+|| |+ -+-..+++|+|+-|+|..|| -|-..|.| .| |++--+|.++|||||+
T Consensus 284 li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~ 363 (368)
T 2dby_A 284 LLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIY 363 (368)
T ss_dssp EEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEE
T ss_pred CEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEE
Confidence 455666 22 24577899999999999999 23344444 26 8889999999999999
Q ss_pred Ee
Q 003318 828 VR 829 (830)
Q Consensus 828 I~ 829 (830)
++
T Consensus 364 ~~ 365 (368)
T 2dby_A 364 VL 365 (368)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 34
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=92.19 E-value=0.17 Score=44.51 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHhC---------C-----CC-----ceEEECCEEeC----CCccCCCCCEEEEe
Q 003318 788 RSGSTAADAAMKVG---------L-----EG-----KLVLVNGQLVL----PNTELKDGDIVEVR 829 (830)
Q Consensus 788 p~GsT~~DfAy~i~---------~-----~~-----~~~~VNg~lvp----l~~~L~~GD~VeI~ 829 (830)
+.|+|+.|.--.+. + ++ ..+.|||+.++ ++|+|++||.|.|+
T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 46899999766663 1 11 24799999999 79999999999986
No 35
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=90.81 E-value=0.22 Score=44.74 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=34.4
Q ss_pred EeCCCCCCHHHHHHHhC-----CCC-----------c-------eEEECCEEe----CCCccCCCCCEEEEe
Q 003318 785 MRLRSGSTAADAAMKVG-----LEG-----------K-------LVLVNGQLV----LPNTELKDGDIVEVR 829 (830)
Q Consensus 785 ~~Lp~GsT~~DfAy~i~-----~~~-----------~-------~~~VNg~lv----pl~~~L~~GD~VeI~ 829 (830)
.+++ |+|..|.--.+. +.. - .+.|||+.| .++|+|++||.|+|+
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 3555 899999776663 111 1 579999999 689999999999997
No 36
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=90.22 E-value=0.34 Score=49.75 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 100 ~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
..+.+.++..|+.+.+.+. .+..-+.|...|+.....+....+....-..+||||||+..
T Consensus 3 ~~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 3 EQAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp CHHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3567899999998887643 23345889999887654432212222345679999999985
No 37
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=89.99 E-value=0.16 Score=51.74 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.8
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 804 GKLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 804 ~~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
.-.++|||++++|+++|++|+.||++|
T Consensus 35 ~vaakvNg~l~dL~~~l~~~~~ve~it 61 (224)
T 1tke_A 35 CIAGRVNGELVDACDLIENDAQLSIIT 61 (224)
T ss_dssp CCEEEETTEEEETTCCBCSCEEEEEEC
T ss_pred eEEEEECCEEeccceEcCCCCeEEEEe
Confidence 456799999999999999999999986
No 38
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=89.72 E-value=0.24 Score=54.57 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=42.0
Q ss_pred eEEEEcCCC---CeEeCCCCCCHHHHHHHhC----CCCceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003318 774 VVIVCWPNG---EIMRLRSGSTAADAAMKVG----LEGKLVLV-----------------NG--QLVLPNTELKDGDIVE 827 (830)
Q Consensus 774 ~v~VftP~G---~i~~Lp~GsT~~DfAy~i~----~~~~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 827 (830)
-+.+||-.- +-..+++|+|+-|+|..|| -|-..|.| -| |++--+|.++|||||+
T Consensus 279 li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~ 358 (363)
T 1jal_A 279 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358 (363)
T ss_dssp EEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEE
Confidence 455777221 4577999999999999999 22233444 26 8889999999999999
Q ss_pred Ee
Q 003318 828 VR 829 (830)
Q Consensus 828 I~ 829 (830)
++
T Consensus 359 f~ 360 (363)
T 1jal_A 359 FR 360 (363)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 39
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=88.51 E-value=0.37 Score=48.48 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccc
Q 003318 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVEDT 164 (830)
.+++.++..+......+. ....-+.|.+.|+.+...+....+....-..+||||||+.-..
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 4 EEIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 456777777776665421 1223389999998776443221122223466999999997653
No 40
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=87.60 E-value=0.61 Score=45.99 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=36.1
Q ss_pred eEeCCCCCCHHHHHHHhCC----------------CCceEEECCEEeCC----CccCCCCCEEEEeC
Q 003318 784 IMRLRSGSTAADAAMKVGL----------------EGKLVLVNGQLVLP----NTELKDGDIVEVRV 830 (830)
Q Consensus 784 i~~Lp~GsT~~DfAy~i~~----------------~~~~~~VNg~lvpl----~~~L~~GD~VeI~t 830 (830)
-++++. +|..|.--.++. ..-.+.|||++|+. +|+|++||.|+|+.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 456774 999997777641 22247999999999 99999999999973
No 41
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=86.64 E-value=0.86 Score=46.68 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 96 YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 96 y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
.+.++...+.++..+......++ .+..-+.|.+.|+.....+....+....-..+||||||+..
T Consensus 4 ~~~~~~~~i~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 4 DPMITETQLTAIQTYALQKLAHD---HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp --CCCHHHHHHHHHHHHTSSTTC---CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 34566778888888887765532 12233789999887764432211222234569999999975
No 42
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=85.78 E-value=1.6 Score=44.46 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHc-CCCCCCChhhHHHHhhhhccccc
Q 003318 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l-~~~~g~~D~dtI~AALLHDvVED 163 (830)
.+.+.++..+......++ ....-+.|.+.|+.....+ ....+........||||||+...
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 4 RMKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 357888888887776532 1223479999998875443 21112222456799999999873
No 43
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=85.40 E-value=0.49 Score=52.67 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=41.1
Q ss_pred eEEEEcCC---CCeEeCCCCCCHHHHHHHhC--CCC--ceE-----------------EECC--EEeCCCccCCCCCEEE
Q 003318 774 VVIVCWPN---GEIMRLRSGSTAADAAMKVG--LEG--KLV-----------------LVNG--QLVLPNTELKDGDIVE 827 (830)
Q Consensus 774 ~v~VftP~---G~i~~Lp~GsT~~DfAy~i~--~~~--~~~-----------------~VNg--~lvpl~~~L~~GD~Ve 827 (830)
-+.+||-. =+-..+++|+|+-|+|..|| +.. ..| |=.| |.+--+|.++|||||+
T Consensus 305 li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~ 384 (396)
T 2ohf_A 305 LEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIF 384 (396)
T ss_dssp EEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEE
Confidence 34456632 14567899999999999999 221 223 2234 8999999999999999
Q ss_pred Ee
Q 003318 828 VR 829 (830)
Q Consensus 828 I~ 829 (830)
++
T Consensus 385 f~ 386 (396)
T 2ohf_A 385 FK 386 (396)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 44
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=85.21 E-value=0.78 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.8
Q ss_pred EeCC--CCCCHHHHHHHhC--C-C----------------CceEEECCEEeC----CCccCCCCCEEEEe
Q 003318 785 MRLR--SGSTAADAAMKVG--L-E----------------GKLVLVNGQLVL----PNTELKDGDIVEVR 829 (830)
Q Consensus 785 ~~Lp--~GsT~~DfAy~i~--~-~----------------~~~~~VNg~lvp----l~~~L~~GD~VeI~ 829 (830)
+.+| .|+|..|.--.+. . + ...+.|||+.+. ++|+|++||.|.|+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3567 7999999766652 1 1 113799999764 89999999999886
No 45
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=82.51 E-value=0.34 Score=43.86 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=30.8
Q ss_pred cccCCCceeee---cCC--ce-----eEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003318 575 SLKMGHPVIRV---EGS--NL-----LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 575 ~Lp~G~tv~~~---vG~--~c-----~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
++|.|.|+.+. .|- .+ .+.+| .| ||+ +||+++.|+.||.|||.+.
T Consensus 31 ~v~~g~TV~daI~~~gi~~~~peIdl~~~~V-~V--ng~--~v~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 31 QVDEGITVQTAITQSGILSQFPEIDLSTNKI-GI--FSR--PIKLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp EEETTCBHHHHHHHHTHHHHCTTCCTTTSEE-EE--EEC--SCCTTCBCCTTCEEEECCC
T ss_pred EcCCCCcHHHHHHHcCCCccCCcccccccEE-EE--cCE--ECCCCccCCCCCEEEEEec
Confidence 47888887654 221 11 01121 23 699 9999999999999999765
No 46
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=82.15 E-value=0.88 Score=50.51 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=40.4
Q ss_pred ceEEEEcCC---CCeEeCCCCCCHHHHHHHhC----CCCceEEEC-----------------C--EEeCCCccCCCCCEE
Q 003318 773 EVVIVCWPN---GEIMRLRSGSTAADAAMKVG----LEGKLVLVN-----------------G--QLVLPNTELKDGDIV 826 (830)
Q Consensus 773 ~~v~VftP~---G~i~~Lp~GsT~~DfAy~i~----~~~~~~~VN-----------------g--~lvpl~~~L~~GD~V 826 (830)
+-+.+||-. -+-..+++|+|+-++|..|| -|-..|-|= | |+.-=+|.++|||||
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 345566622 25678999999999999999 222333221 3 456778999999999
Q ss_pred EEe
Q 003318 827 EVR 829 (830)
Q Consensus 827 eI~ 829 (830)
.++
T Consensus 386 ~f~ 388 (392)
T 1ni3_A 386 HWK 388 (392)
T ss_dssp ECC
T ss_pred EEE
Confidence 875
No 47
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=78.66 E-value=1.2 Score=38.92 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred eEEECCEEeCCCccCCCCCEEEEe
Q 003318 806 LVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 806 ~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
.|+|||+.+..+++|+.||+|+|.
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEEC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEE
Confidence 479999999999999999999884
No 48
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=77.79 E-value=0.75 Score=39.31 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ +||.++.|+.||.|+|++.
T Consensus 52 Ng~--~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 52 NGK--VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp TTE--EECSSSCCCSSCCCBCSCC
T ss_pred CCE--ECCCCCCcCCCCEEEEEcc
Confidence 899 9999999999999999864
No 49
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=76.85 E-value=3.3 Score=42.36 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
.+.+.++..|+.+.+.+. .+..-+.|.+.|+.....+....+....-..+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 467899999999987653 23345899999988766554333333345669999999985
No 50
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=76.50 E-value=0.73 Score=39.47 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=30.7
Q ss_pred cccCCCceeee---cCCc--eeEEEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003318 575 SLKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 575 ~Lp~G~tv~~~---vG~~--c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
++|.|.|+-+. .|-. -+...| ||+ +||.+..++ ||.|||++.
T Consensus 16 ev~~g~Tv~dLL~~Lgl~~~~VvV~v-----NG~--~v~~d~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 16 AVDDDGTYADLVRAVDLSPHEVTVLV-----DGR--PVPEDQSVE-VDRVKVLRL 62 (74)
T ss_dssp ECSTTCSHHHHHHTTCCCSSCCCEEC-----CCC--CCCTTSSSC-CCCEEECSS
T ss_pred EcCCCCcHHHHHHHcCCCcceEEEEE-----CCE--ECCHHHCCC-CCEEEEEEe
Confidence 68899887655 3422 222333 899 999999887 999999864
No 51
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=74.35 E-value=3.6 Score=41.48 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred CcchhhhHHHHHHHHHHcC------CCCCCChhhHHHHhhhhcccc
Q 003318 123 GDPYLTHCIHTGRILAMLI------PSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 123 GePYI~Hpl~VA~ILa~l~------~~~g~~D~dtI~AALLHDvVE 162 (830)
++....|.++||.+...+. ...+....-++.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 5778899999986543221 011223356788999999988
No 52
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=73.09 E-value=0.71 Score=51.38 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHh
Q 003318 730 INNKVRLLRTMLRWEEQLRSEASLR 754 (830)
Q Consensus 730 ~~~k~~wlr~~lewq~e~~~~~~~~ 754 (830)
++++++|||+|+|||++..|+.||+
T Consensus 358 ~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 358 QKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp -----CHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3568899999999999998888886
No 53
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=71.77 E-value=3.2 Score=37.22 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+.-.++|++||+|.|
T Consensus 69 nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSSEEECCTTCCEEE
T ss_pred CCeEECCEECCCCeECCCCCEEEE
Confidence 357999999988789999999986
No 54
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=71.03 E-value=2.3 Score=40.31 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003318 804 GKLVLVNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 804 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 829 (830)
...|+|||+.+..++.|+.||+|+|.
T Consensus 33 ~G~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 33 GGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp TTCEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCcEEECCEEcCCCCEeCCCCEEEEE
Confidence 34589999999999999999999884
No 55
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=70.67 E-value=2.2 Score=35.70 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||. +||-+..|+.||.|+|++.
T Consensus 45 N~~--~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 45 NGQ--IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp TTE--ECCTTSBCCTTCEEEEEEC
T ss_pred CCE--ECCCcccCCCCCEEEEEec
Confidence 899 9999999999999999753
No 56
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=70.32 E-value=1.9 Score=35.54 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=19.4
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003318 601 GGRELLVAV----SFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpl----s~~L~~Gd~VeI~ts 624 (830)
||+ +||- ++.|+.||.|+|++.
T Consensus 37 N~~--~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 37 NQQ--IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp TTE--EECHHHHTTCCCCTTEEECEEES
T ss_pred CCE--ECCchhcCCcCCCCCCEEEEEee
Confidence 899 8997 789999999999863
No 57
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=68.48 E-value=3 Score=38.36 Aligned_cols=24 Identities=46% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEECCEEe----CCCccCCCCCEEEEe
Q 003318 806 LVLVNGQLV----LPNTELKDGDIVEVR 829 (830)
Q Consensus 806 ~~~VNg~lv----pl~~~L~~GD~VeI~ 829 (830)
.+.|||+-+ -++|+|++||.|.++
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 479999988 589999999999886
No 58
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=68.11 E-value=3.2 Score=36.73 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCeeEEEec----ccccCCCCeEEEcC
Q 003318 601 GGRELLVAV----SFGLAASEVVADRR 623 (830)
Q Consensus 601 ngr~~lVpl----s~~L~~Gd~VeI~t 623 (830)
||+ +||- ++.|+.||.|||++
T Consensus 58 Ng~--iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 58 NKE--IIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTE--EECGGGTTTSBCCSSSEEEEEE
T ss_pred CCE--ECChhhcCCcCCCCCCEEEEEc
Confidence 899 9997 68999999999975
No 59
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=67.83 E-value=3 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003318 806 LVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 806 ~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
+++|||+.|.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 57999999987799999999986
No 60
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=65.38 E-value=2.2 Score=36.79 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003318 601 GGRELLVAVS----FGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls----~~L~~Gd~VeI~ts 624 (830)
||. +||=+ +.|+.||.|||++.
T Consensus 40 Ng~--iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 40 NGE--VLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp TTE--ECCTTHHHHCEECSSBCEEECCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEee
Confidence 899 99996 89999999999875
No 61
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=64.55 E-value=4 Score=34.72 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.9
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003318 601 GGRELLVAVS----FGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls----~~L~~Gd~VeI~ts 624 (830)
||. +||-+ +.|+.||.|||++.
T Consensus 36 Ng~--iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 36 NYD--VVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp SSS--EECHHHHTTCBCCTTCEEEEECC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEcc
Confidence 899 99986 79999999999875
No 62
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=63.02 E-value=5.7 Score=39.81 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003318 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (830)
Q Consensus 103 ~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDv 160 (830)
.+.++..+......+ .+....+.|.+.|+.....+....+........||||||+
T Consensus 14 l~~~~~~~v~~~~~~---~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDY---DDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTC---CCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 566777888776542 2233457899999876543321111223456799999999
No 63
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=62.95 E-value=4 Score=39.35 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.5
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003318 806 LVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 806 ~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
+++|||+.|.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 47999999987789999999976
No 64
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=59.88 E-value=6 Score=33.05 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ +|+.++.|+.||.|+|+..
T Consensus 52 Ng~--~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 52 NEE--FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp TTE--EECTTSEECTTCEEEEECS
T ss_pred CCE--ECCCCCCcCCCCEEEEECC
Confidence 899 9999999999999999753
No 65
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=58.62 E-value=5.2 Score=36.93 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEECCEE----eCCCccCCCCCEEEEe
Q 003318 806 LVLVNGQL----VLPNTELKDGDIVEVR 829 (830)
Q Consensus 806 ~~~VNg~l----vpl~~~L~~GD~VeI~ 829 (830)
.+.|||+- --++|+|++||.|.|+
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 37999985 4699999999999986
No 66
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=57.48 E-value=4.1 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEECCEEe-CCCccCCCCCEEEE
Q 003318 807 VLVNGQLV-LPNTELKDGDIVEV 828 (830)
Q Consensus 807 ~~VNg~lv-pl~~~L~~GD~VeI 828 (830)
|+|||+.+ ...++++.||+|+|
T Consensus 48 V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEECCEEecCCCCCCCCCCEEEE
Confidence 69999987 78999999999987
No 67
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=57.00 E-value=5.5 Score=38.74 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=21.9
Q ss_pred ceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 805 KLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 805 ~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
..|.|||+.| -+++.++.||+|+|.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEe
Confidence 3489999999 599999999999984
No 68
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=55.84 E-value=15 Score=37.07 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhc--CCcccc-------CcchhhhHHHHHHHHHHcCCC--CCCChhhHHHHhhhhcccc
Q 003318 101 DEQVQKAIAFAKRAHH--GQFRKT-------GDPYLTHCIHTGRILAMLIPS--SGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 101 ~~~l~kA~~fA~~aH~--gQ~Rks-------GePYI~Hpl~VA~ILa~l~~~--~g~~D~dtI~AALLHDvVE 162 (830)
...+.+.+.|...++. .+.|.+ .|..-.|...||.+..-+... .+..-.-++..||+||+.|
T Consensus 7 ~~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E 79 (200)
T 3kh1_A 7 ESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVE 79 (200)
T ss_dssp GHHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHH
Confidence 3567788888877764 233422 255678999998764332211 1122246889999999999
No 69
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=55.34 E-value=10 Score=30.92 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=19.6
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003318 601 GGRELLVAVS----FGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls----~~L~~Gd~VeI~ts 624 (830)
||+ +||-+ +.|+.||.|+|++.
T Consensus 35 N~~--~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 35 NEE--AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTE--EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCE--ECCccccCCcCCCCCCEEEEEee
Confidence 899 99977 99999999999863
No 70
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=55.09 E-value=6 Score=40.26 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceEEECCEEeC-CCccCCCCCEEEEe
Q 003318 805 KLVLVNGQLVL-PNTELKDGDIVEVR 829 (830)
Q Consensus 805 ~~~~VNg~lvp-l~~~L~~GD~VeI~ 829 (830)
..|.|||+.|. +++.++.||+|+|.
T Consensus 124 G~V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 124 GHITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp TCEEETTEECCCTTCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcCcCCCCEEEEc
Confidence 34899999994 99999999999984
No 71
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=54.98 E-value=14 Score=34.68 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.+.. .++|++||+|.|
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEE
Confidence 468999999988 589999999987
No 72
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=54.73 E-value=6.8 Score=39.03 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEECCEEeCCCccCCCCCEEEE
Q 003318 807 VLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 807 ~~VNg~lvpl~~~L~~GD~VeI 828 (830)
++|||+.|.-.++|++||+|-+
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 5899999998999999999965
No 73
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=53.59 E-value=5.5 Score=36.54 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+.-.++|++||+|.|
T Consensus 80 ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCCEECCCCCEEEE
Confidence 457999999997789999999976
No 74
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=53.25 E-value=8.3 Score=36.16 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCCc--cCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNT--ELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~--~L~~GD~VeI 828 (830)
.+.+|||+.++... +|++||+|.+
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 46899999998874 7999999976
No 75
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=52.70 E-value=4.8 Score=39.52 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 125 PYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
....|.+.||.+...+....|.......+||||||+--
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35689999987654332111222345779999999854
No 76
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=52.69 E-value=6.3 Score=34.81 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+. .++|++||++.|
T Consensus 65 nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCEEECCEECc-eEECCCCCEEEE
Confidence 35799999998 789999999986
No 77
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=52.33 E-value=4.9 Score=39.52 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003318 126 YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (830)
Q Consensus 126 YI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVE 162 (830)
...|.+.||.+...+....|.......+||||||+=-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 5789999987654332111222345779999999855
No 78
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=49.75 E-value=5.7 Score=39.36 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.6
Q ss_pred chhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 125 PYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
....|.+.||.+...+....|.......+||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 356899999876543322112223456799999998553
No 79
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=49.32 E-value=13 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.++. .++|++||+|.|
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEE
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 467999999887 589999999987
No 80
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=48.14 E-value=7.6 Score=36.36 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+.- ++|++||+|.|
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 478999999985 99999999976
No 81
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=46.59 E-value=17 Score=37.95 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhhHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhccc
Q 003318 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDVV 161 (830)
Q Consensus 104 l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILa~l~~~~g~~D-~dtI~AALLHDvV 161 (830)
|.+|+++--......-...-.|-+.|.+.+|.....-+. | .-.+.||||||+=
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~-----d~dw~~laaLlHDLG 91 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHP-----DKDWFHLVGLLHDLG 91 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHST-----TCHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCc-----ChhHHHHHHHHhccH
Confidence 677776665554443222346678999999988776554 3 3455999999973
No 82
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=45.78 E-value=8.8 Score=36.61 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.8
Q ss_pred ceEEECCEEeCC-CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP-NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl-~~~L~~GD~VeI 828 (830)
.+++|||+.+.- .++|++||+|.|
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 457999999987 589999999987
No 83
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=45.24 E-value=15 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ +++.++.|+.||.|+|+..
T Consensus 56 N~~--~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 56 NQT--LVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp TTE--ECCTTCBCCTTCEEEEECC
T ss_pred CCE--ECCCCCCCCCCCEEEEeCC
Confidence 899 8999999999999999753
No 84
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=44.78 E-value=19 Score=36.60 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.2
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
+..-.|.+.||.+...+.+ ..+...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~---~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCP---GATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCT---TCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCC---CCCHHHHHHHHhcCchHh
Confidence 5557899999987665532 235678999999999984
No 85
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=44.64 E-value=10 Score=37.19 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=25.3
Q ss_pred cchhhhHHHHHHHHHHcCCC-----CCCChhh-HHHHhhhhccccc
Q 003318 124 DPYLTHCIHTGRILAMLIPS-----SGKRAVD-TVVAGILHDVVDD 163 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~-----~g~~D~d-tI~AALLHDvVED 163 (830)
+.-..|...||.+...+... .+ .|.+ ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~-~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKR-IDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHH
Confidence 55678999988765222110 12 2444 6899999999874
No 86
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=44.36 E-value=10 Score=38.54 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=23.0
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
|.+..|.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 111 VNHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HHTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred HhCCcEEeCCEEEeecceecCCCCEEEEc
Confidence 3344579999998 589999999999984
No 87
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=44.35 E-value=10 Score=34.41 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+. .++|++||+|.|
T Consensus 73 nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS-EEEECTTCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 45799999998 789999999986
No 88
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=42.98 E-value=28 Score=35.28 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=27.2
Q ss_pred cchhhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 124 ePYI~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
+..-.|...||.+..-+.. .+..-..++..||+||+.|-
T Consensus 44 ESVAEHS~~vAliA~~l~~-~~vD~~r~~~maL~HDl~E~ 82 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAEC 82 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCC-TTSCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHcc-ccCCHHHHHHHHHhcchHHh
Confidence 5667899999976544432 22222368889999999993
No 89
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=41.69 E-value=12 Score=35.66 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.++. .++|++||+|.|
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEECCCCCEEEE
Confidence 457999999985 689999999986
No 90
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=40.92 E-value=17 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ .|+.++.|+.||.|+|+..
T Consensus 73 Ng~--~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 73 NGR--YVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TTB--CCCTTCBCCTTCEEEEESC
T ss_pred CCE--ECCCCCCCCCCCEEEEECC
Confidence 899 8999999999999999753
No 91
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=40.85 E-value=11 Score=41.62 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=47.5
Q ss_pred HHHhccccccccccCCCCccCCCCceeeeceeccCCCCCCH--HHHHHHHHHHHHhhcCCcc--ccCc---chhhhHHHH
Q 003318 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQFR--KTGD---PYLTHCIHT 133 (830)
Q Consensus 61 ~~~~~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~y~~~~~--~~l~kA~~fA~~aH~gQ~R--ksGe---PYI~Hpl~V 133 (830)
.+|.-||.+.+..-.|..-++.+. -..|+. .+|-..-.|=.-.+..|.- ..|+ .-++|.++|
T Consensus 15 ~l~~~a~~~~~~~~R~~~e~~~~~-----------R~~FqrD~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~V 83 (376)
T 2dqb_A 15 RLAPYAQKARDTRGRAHPEPESLY-----------RTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEV 83 (376)
T ss_dssp HSCTTSCCGGGCCCCSSCCCCCSS-----------CCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHH
T ss_pred hcChhhcCchhhcCccCCCCCCCC-----------CCcHHHHHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHH
Confidence 357788887765433322111110 112332 3444445555555666752 1233 346999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003318 134 GRILAMLIPSSGKRAVDTVVAGILHDVV 161 (830)
Q Consensus 134 A~ILa~l~~~~g~~D~dtI~AALLHDvV 161 (830)
|.+...+...-|....-+-+||||||+=
T Consensus 84 a~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 84 AQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 9875433221122233466999999986
No 92
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=40.62 E-value=9.4 Score=34.53 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEEe
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEVR 829 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI~ 829 (830)
.+++|||+.+.. .++|++||+|.|-
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G 94 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLV 94 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEE
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEe
Confidence 457999998886 5899999999873
No 93
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=39.84 E-value=11 Score=35.89 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.4
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003318 806 LVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 806 ~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
+++|||+.+. .+.|++||+|.|
T Consensus 109 GT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 109 GTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp CCEETTEECS-EEECCTTEEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 4689999998 789999999986
No 94
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=39.50 E-value=15 Score=33.96 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.+.. .++|++||+|.|
T Consensus 79 NGT~vNg~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 79 NGTWLNGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCeEEcCCCCEEEE
Confidence 567999999887 589999999987
No 95
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=39.18 E-value=11 Score=34.65 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.7
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+.-.++|++||+|.|
T Consensus 75 nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECSSCEECCTTEEEEC
T ss_pred CCEEECCEECCCcEEcCCCCEEEE
Confidence 457999999986689999999976
No 96
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=39.16 E-value=9.6 Score=34.63 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.3
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.+.. .++|++||+|.|
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEE
Confidence 357999998876 588999999986
No 97
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=38.96 E-value=19 Score=37.24 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003318 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (830)
Q Consensus 127 I~Hpl~VA~ILa~l~~~~g~~D~dtI~AALLHDvVED 163 (830)
+.|.+.|+.....+....+.......+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 7899999988766654333323457799999999764
No 98
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=37.50 E-value=15 Score=33.46 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEECCEEeCCC--ccCCCCCEEEEe
Q 003318 807 VLVNGQLVLPN--TELKDGDIVEVR 829 (830)
Q Consensus 807 ~~VNg~lvpl~--~~L~~GD~VeI~ 829 (830)
..|||+.+.-+ ++|++||+++|+
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEE
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEc
Confidence 47899988877 999999999986
No 99
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=37.44 E-value=24 Score=30.22 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003318 601 GGRELLVAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVpls~~L~~Gd~VeI~ts 624 (830)
||+ .|+.++.|+.||.|+|+..
T Consensus 64 N~~--~v~~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 64 NGE--AAALGEATAAGDELALFPP 85 (89)
T ss_dssp TTE--ECCTTSBCCTTCEEEEECC
T ss_pred CCE--ECCCCcccCCCCEEEEECC
Confidence 899 8999999999999999753
No 100
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=36.73 E-value=12 Score=36.22 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPN--TELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~--~~L~~GD~VeI 828 (830)
.+.+|||+.++.. ++|++||+|.|
T Consensus 117 NGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 117 NGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp SCCEETTEECCTTCCEECCTTEEEES
T ss_pred CccEECCEEcCCCceEEcCCCCEEEE
Confidence 4679999999984 78999999975
No 101
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=36.70 E-value=11 Score=36.45 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.5
Q ss_pred CceEEECCEEeCC--CccCCCCCEEEE
Q 003318 804 GKLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 804 ~~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
..+.+|||+.+.- .++|++||+|.|
T Consensus 82 tNGT~VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 82 TNVSYLNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TTCCEETTEECCSSEEEECCSSCCEES
T ss_pred cCCeEECCEEcCCCceEEcCCCCEEEE
Confidence 3567999999988 589999999987
No 102
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=36.52 E-value=4.7 Score=41.07 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=21.7
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEEe
Q 003318 804 GKLVLVNGQLV-LPNTELKDGDIVEVR 829 (830)
Q Consensus 804 ~~~~~VNg~lv-pl~~~L~~GD~VeI~ 829 (830)
+..|.|||+.| -+++.++.||+|+|.
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEec
Confidence 34579999999 489999999999874
No 103
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=36.37 E-value=13 Score=34.83 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred ceEEECCEEeCC----------CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP----------NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl----------~~~L~~GD~VeI 828 (830)
.+++|||+.+.. .++|++||+|.|
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 457999999984 789999999976
No 104
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=35.98 E-value=19 Score=34.89 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.0
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.+.. .++|++||+|.|
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEE
Confidence 567999999987 489999999987
No 105
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=33.45 E-value=18 Score=35.23 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.9
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+. .++|++||+|.|
T Consensus 127 NGT~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 127 NGTTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCeEECCEECc-eEECCCCCEEEE
Confidence 35799999997 689999999986
No 106
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=33.12 E-value=13 Score=36.86 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLP--NTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl--~~~L~~GD~VeI 828 (830)
.+++|||+.+.- .++|++||+|.|
T Consensus 107 NGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 107 NVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp SCCEETTEECCSSEEEECCTTBCCEE
T ss_pred CCeEECCEEcCCCcceEcCCCCEEEE
Confidence 567999999988 589999999987
No 107
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=32.66 E-value=18 Score=35.33 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.8
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI 828 (830)
.+++|||+.+. ..+|++||+|.|
T Consensus 117 NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 117 NGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 34699999988 689999999986
No 108
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=31.59 E-value=17 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003318 805 KLVLVNGQLVLPN--TELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvpl~--~~L~~GD~VeI 828 (830)
.+.+|||+.++.. ++|++||+|.+
T Consensus 164 NGTfVNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp SCCEETTEECCBTSCEECCTTCEEES
T ss_pred CCCeECCEECCCCceeECCCCCEEEE
Confidence 4679999999877 58999999975
No 109
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=29.88 E-value=41 Score=30.54 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEECCEEeCC---CccCCCCCEEEEe
Q 003318 807 VLVNGQLVLP---NTELKDGDIVEVR 829 (830)
Q Consensus 807 ~~VNg~lvpl---~~~L~~GD~VeI~ 829 (830)
..|||.++.- +++|+|||.|++.
T Consensus 71 ~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 71 ITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred EEECCEEhhhchhheEecCCCEEEEE
Confidence 4899999886 7899999999975
No 110
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=28.44 E-value=19 Score=39.52 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=24.2
Q ss_pred chhhhHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhccccc
Q 003318 125 PYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDVVDD 163 (830)
Q Consensus 125 PYI~Hpl~VA~ILa~l~~~~g~~D-~dtI~AALLHDvVED 163 (830)
..+.|.+.||.+...+....|... ....+||||||+-.-
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 458999999876533221111112 346799999998663
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=28.19 E-value=11 Score=32.88 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.3
Q ss_pred ECCEEeCCCccCCCCCEEEEe
Q 003318 809 VNGQLVLPNTELKDGDIVEVR 829 (830)
Q Consensus 809 VNg~lvpl~~~L~~GD~VeI~ 829 (830)
..|--..-++++.|||++||+
T Consensus 61 L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 61 FSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp EETTSBTGGGTCCTTCEEEEC
T ss_pred EcCCCEEeeCCcCCCCEEEEC
Confidence 333334458999999999985
No 112
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=28.12 E-value=32 Score=29.27 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003318 601 GGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
||+ .++ .++.|+.||.|+|+..
T Consensus 61 N~~--~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 61 NGN--NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp SSS--BGGGTCSSSCBCCTTCEEEEECC
T ss_pred CCE--EccccCCCCcCCCCCCEEEEeCC
Confidence 789 887 7999999999999753
No 113
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=27.45 E-value=43 Score=32.54 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=31.7
Q ss_pred EEEEcCCCCeEeC--CCCCCHHHHHHHh-C-----CCCc------e-EEECCEEeC
Q 003318 775 VIVCWPNGEIMRL--RSGSTAADAAMKV-G-----LEGK------L-VLVNGQLVL 815 (830)
Q Consensus 775 v~VftP~G~i~~L--p~GsT~~DfAy~i-~-----~~~~------~-~~VNg~lvp 815 (830)
.+-|+-||+-+++ +.|.|.+|+.... | .+|. | |.|||+.|.
T Consensus 4 ~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~ 59 (161)
T 1rm6_C 4 ILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL 59 (161)
T ss_dssp EEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEe
Confidence 3579999999887 7899999999986 5 2221 1 799999764
No 114
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.11 E-value=2e+02 Score=22.78 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=40.2
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003318 774 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 829 (830)
Q Consensus 774 ~v~VftP~G~i--~~Lp~GsT~~DfAy~i~----~~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 829 (830)
.|+|=+++|+. ++++...|..|+--.|. +... -...+|+...- +|.+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 46788888884 67889999999888774 4332 24668887643 4566799998764
No 115
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=25.93 E-value=18 Score=42.43 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=37.9
Q ss_pred cccCCCceeee---c----CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 575 SLKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 575 ~Lp~G~tv~~~---v----G~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
..|.|.|+.++ + ...+++|+| ||+ ++.|+++|..+..|+++|...+
T Consensus 15 ~~~~g~t~~~ia~~~~~~~~~~~v~~~v-----ng~--~~dl~~~l~~d~~v~~~~~~~~ 67 (645)
T 1nyr_A 15 AFDKGTTTEDIAQSISPGLRKKAVAGKF-----NGQ--LVDLTKPLETDGSIEIVTPGSE 67 (645)
T ss_dssp BCCTTCCHHHHHHTTCHHHHHHCCEEEE-----TTE--EECTTSCCCSCBCCCEECTTSH
T ss_pred EecCCCCHHHHHHHhhhhcccCeEEEEE-----CCE--EEeCCcccCCCCeEEEeeccch
Confidence 36788887766 2 246899999 999 9999999999999999988654
No 116
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=25.78 E-value=26 Score=37.46 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=23.5
Q ss_pred cCcchh-hhHHHHHHHHHHcCCCCCCChh---h-HHHHhhhhccc
Q 003318 122 TGDPYL-THCIHTGRILAMLIPSSGKRAV---D-TVVAGILHDVV 161 (830)
Q Consensus 122 sGePYI-~Hpl~VA~ILa~l~~~~g~~D~---d-tI~AALLHDvV 161 (830)
...||. .|.+.||.+...+...-|.... . ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445665 7999998765433211111122 3 45699999984
No 117
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=25.51 E-value=15 Score=39.34 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCceEEECCEE-eCCCccCCCCCEEEEe
Q 003318 802 LEGKLVLVNGQL-VLPNTELKDGDIVEVR 829 (830)
Q Consensus 802 ~~~~~~~VNg~l-vpl~~~L~~GD~VeI~ 829 (830)
+....|+|||+. +..+++++.||+|+|.
T Consensus 39 I~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 39 ILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp -----------------------------
T ss_pred HHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 334458999998 8899999999999874
No 118
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=23.96 E-value=20 Score=42.16 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.3
Q ss_pred ccCCCceeee---c----CCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003318 576 LKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 627 (830)
Q Consensus 576 Lp~G~tv~~~---v----G~~c~gAkV~~v~~ngr~~lVpls~~L~~Gd~VeI~ts~~p 627 (830)
.+.|.|+.++ + ...+++|+| ||+ ++.|+++|..+..|+++|...+
T Consensus 14 ~~~~~t~~~~a~~i~~~~~~~~~~~~v-----ng~--~~dl~~~l~~d~~~~~~~~~~~ 65 (642)
T 1qf6_A 14 YDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (642)
T ss_dssp CSSCBCHHHHHHHHCHHHHHHCSEEEE-----TTE--EEETTSCBCSCEECCEECTTSH
T ss_pred ecCCCCHHHHHHHhchhhhhheEEEEE-----CCE--EeccccccCCCceEEEeecCcH
Confidence 5777787765 3 356899999 999 9999999999999999998754
No 119
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=23.57 E-value=29 Score=37.72 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHHHHH
Q 003318 384 IALTSLVACEEALEKEL 400 (830)
Q Consensus 384 ~~l~~l~~~~~~L~~~~ 400 (830)
.+|.....|+..|.+++
T Consensus 223 ~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 223 DALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555666777777765
No 120
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.86 E-value=2.5e+02 Score=22.17 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.9
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003318 774 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 829 (830)
Q Consensus 774 ~v~VftP~G~i--~~Lp~GsT~~DfAy~i~----~~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 829 (830)
.|+|=+++|+. ++++..+|..|+--+|. +... -...+|+...- ++.+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 36788888874 67889999999888774 4332 24668887533 4556799998775
No 121
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.83 E-value=55 Score=27.14 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.7
Q ss_pred CCeeEE-EecccccCCCCeEEEcCC
Q 003318 601 GGRELL-VAVSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~l-Vpls~~L~~Gd~VeI~ts 624 (830)
||+ . ...++.|+.||.|+|+..
T Consensus 48 N~~--~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 48 NDH--LIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp SSS--EECCTTCCCCTTCEEEEECC
T ss_pred CCE--EcCCCCcCCCCCCEEEEECC
Confidence 788 5 678999999999999753
No 122
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=22.18 E-value=20 Score=33.65 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=19.9
Q ss_pred ceEEECCEEeC--CCccCCCCCEEEE
Q 003318 805 KLVLVNGQLVL--PNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lvp--l~~~L~~GD~VeI 828 (830)
.+++|||+.+. -.++|++||+|.|
T Consensus 100 NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 100 HGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 45799999988 4678999999865
No 123
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=22.04 E-value=35 Score=31.95 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.7
Q ss_pred ceEEECCEEe---C-CCccCCCCCEEEE
Q 003318 805 KLVLVNGQLV---L-PNTELKDGDIVEV 828 (830)
Q Consensus 805 ~~~~VNg~lv---p-l~~~L~~GD~VeI 828 (830)
.+++|||+.+ | -.++|++||+|.|
T Consensus 89 NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 89 NGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp SCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 3579999874 2 3578999999986
No 124
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.60 E-value=63 Score=27.80 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.1
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003318 601 GGRELLVA----VSFGLAASEVVADRRP 624 (830)
Q Consensus 601 ngr~~lVp----ls~~L~~Gd~VeI~ts 624 (830)
||+ .++ +++.|+.||.|.|+..
T Consensus 64 N~~--~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 64 NDE--DVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp TTE--EGGGTTGGGCBCCTTCEEEEEEC
T ss_pred CCE--EccCcCCCCcCCCCCCEEEEECC
Confidence 789 888 6999999999999753
No 125
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=21.28 E-value=39 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEeC
Q 003318 805 KLVLVNGQLVLPNTELKDGDIVEVRV 830 (830)
Q Consensus 805 ~~~~VNg~lvpl~~~L~~GD~VeI~t 830 (830)
-.++|||+++.|+++|..+..|+++|
T Consensus 38 v~~~vng~~~dl~~~l~~d~~v~~~~ 63 (645)
T 1nyr_A 38 VAGKFNGQLVDLTKPLETDGSIEIVT 63 (645)
T ss_dssp CEEEETTEEECTTSCCCSCBCCCEEC
T ss_pred EEEEECCEEEeCCcccCCCCeEEEee
Confidence 34699999999999999999999886
Done!