Query 003320
Match_columns 830
No_of_seqs 202 out of 261
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 21:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 1.9E-95 4E-100 802.9 31.1 442 113-571 5-457 (458)
2 PF04802 SMK-1: Component of I 100.0 1.8E-64 4E-69 512.0 18.4 190 127-316 3-193 (193)
3 PF10508 Proteasom_PSMB: Prote 96.1 0.56 1.2E-05 55.3 21.4 200 318-552 75-278 (503)
4 KOG2160 Armadillo/beta-catenin 95.5 1.7 3.8E-05 48.8 20.6 193 275-505 88-281 (342)
5 KOG2175 Protein predicted to b 95.4 0.1 2.2E-06 60.1 11.2 264 291-574 7-304 (458)
6 PF01602 Adaptin_N: Adaptin N 93.6 0.98 2.1E-05 52.3 13.9 231 321-587 115-372 (526)
7 PF12460 MMS19_C: RNAPII trans 93.5 15 0.00033 42.2 23.2 240 240-516 109-404 (415)
8 PF03224 V-ATPase_H_N: V-ATPas 93.1 4.3 9.4E-05 44.7 17.3 255 237-525 23-288 (312)
9 KOG0166 Karyopherin (importin) 92.7 9.8 0.00021 45.2 19.9 241 269-552 195-436 (514)
10 PTZ00429 beta-adaptin; Provisi 92.5 36 0.00079 42.5 25.7 159 306-505 119-284 (746)
11 PF00568 WH1: WH1 domain; Int 92.4 0.23 4.9E-06 46.9 5.2 64 5-70 47-110 (111)
12 cd00835 RanBD Ran-binding doma 92.0 0.24 5.2E-06 47.4 5.0 68 5-72 47-122 (122)
13 PF01602 Adaptin_N: Adaptin N 92.0 7.5 0.00016 45.1 18.2 228 270-551 116-349 (526)
14 PF10508 Proteasom_PSMB: Prote 91.8 33 0.00073 40.6 24.4 169 311-509 193-369 (503)
15 cd00020 ARM Armadillo/beta-cat 90.7 6.2 0.00013 35.5 12.7 111 269-394 8-118 (120)
16 cd00837 EVH1 EVH1 (Enabled, Va 89.3 0.62 1.4E-05 43.6 5.0 63 5-69 40-102 (104)
17 PF14664 RICTOR_N: Rapamycin-i 88.1 6.6 0.00014 44.8 13.1 145 258-427 47-200 (371)
18 PF04499 SAPS: SIT4 phosphatas 86.3 80 0.0017 37.5 23.4 283 250-564 3-394 (475)
19 PLN03200 cellulose synthase-in 85.4 1.1E+02 0.0024 42.4 23.6 226 258-533 437-664 (2102)
20 KOG0166 Karyopherin (importin) 84.0 97 0.0021 37.2 19.9 202 313-546 145-346 (514)
21 PF12348 CLASP_N: CLASP N term 82.6 52 0.0011 34.0 15.7 186 278-504 15-204 (228)
22 cd00020 ARM Armadillo/beta-cat 78.4 8.8 0.00019 34.5 7.4 74 473-549 3-76 (120)
23 KOG2734 Uncharacterized conser 76.2 1.7E+02 0.0037 34.6 19.5 200 310-532 166-373 (536)
24 PF00638 Ran_BP1: RanBP1 domai 73.4 6.3 0.00014 37.4 5.2 68 5-72 46-121 (122)
25 PF04826 Arm_2: Armadillo-like 73.1 1.5E+02 0.0032 32.4 17.1 70 478-551 135-204 (254)
26 PLN03200 cellulose synthase-in 72.3 4.2E+02 0.0091 37.3 28.1 213 318-562 607-840 (2102)
27 PF11841 DUF3361: Domain of un 72.2 1.1E+02 0.0024 31.4 13.8 103 311-420 39-153 (160)
28 KOG2085 Serine/threonine prote 71.5 22 0.00047 41.3 9.5 234 100-357 147-422 (457)
29 KOG1991 Nuclear transport rece 70.4 2E+02 0.0044 36.9 18.0 84 326-422 468-554 (1010)
30 PF11707 Npa1: Ribosome 60S bi 68.8 2E+02 0.0044 32.2 17.4 219 258-505 48-302 (330)
31 COG5240 SEC21 Vesicle coat com 63.4 1.7E+02 0.0037 35.8 14.7 144 238-395 230-403 (898)
32 KOG0168 Putative ubiquitin fus 62.5 1.1E+02 0.0024 38.7 13.5 245 257-530 360-653 (1051)
33 smart00461 WH1 WASP homology r 62.3 13 0.00028 35.1 4.7 59 9-69 45-104 (106)
34 PF04499 SAPS: SIT4 phosphatas 60.3 32 0.00069 40.8 8.5 275 254-532 49-409 (475)
35 KOG4224 Armadillo repeat prote 57.3 2.6E+02 0.0056 32.6 14.3 182 314-530 202-386 (550)
36 cd00256 VATPase_H VATPase_H, r 56.2 4E+02 0.0087 31.4 25.9 205 284-529 68-285 (429)
37 cd01207 Ena-Vasp Enabled-VASP- 50.9 32 0.00069 33.1 5.3 52 16-69 54-105 (111)
38 PF13251 DUF4042: Domain of un 49.8 3.2E+02 0.007 28.5 12.8 59 449-508 117-176 (182)
39 PF02985 HEAT: HEAT repeat; I 49.6 22 0.00047 25.9 3.2 30 321-350 1-30 (31)
40 PF12755 Vac14_Fab1_bd: Vacuol 49.4 70 0.0015 29.8 7.2 66 321-393 28-93 (97)
41 KOG2073 SAP family cell cycle 49.3 6.9E+02 0.015 32.1 19.5 130 247-396 79-220 (838)
42 smart00638 LPD_N Lipoprotein N 49.1 1.1E+02 0.0025 36.5 10.9 75 287-361 440-521 (574)
43 KOG1293 Proteins containing ar 47.5 90 0.0019 38.3 9.4 115 447-573 436-553 (678)
44 PF01603 B56: Protein phosphat 47.3 1.4E+02 0.0031 34.5 10.9 218 127-396 131-370 (409)
45 PF05536 Neurochondrin: Neuroc 46.4 6.2E+02 0.013 30.7 18.2 206 267-509 4-216 (543)
46 PF12460 MMS19_C: RNAPII trans 44.9 5.4E+02 0.012 29.7 16.3 64 292-360 342-405 (415)
47 PF10257 RAI16-like: Retinoic 44.2 54 0.0012 37.2 6.8 91 471-564 3-99 (353)
48 KOG2160 Armadillo/beta-catenin 44.0 2.5E+02 0.0055 32.1 11.8 97 246-353 146-244 (342)
49 PF08167 RIX1: rRNA processing 43.4 2.4E+02 0.0053 28.4 10.7 125 323-473 28-153 (165)
50 smart00160 RanBD Ran-binding d 42.5 38 0.00082 33.1 4.6 64 5-68 57-128 (130)
51 PF12922 Cnd1_N: non-SMC mitot 42.3 72 0.0016 32.2 6.7 47 403-468 121-167 (171)
52 cd03568 VHS_STAM VHS domain fa 42.1 2.8E+02 0.006 27.7 10.6 107 272-395 3-109 (144)
53 PF05804 KAP: Kinesin-associat 41.6 8.3E+02 0.018 30.8 23.1 227 315-550 285-559 (708)
54 PF00790 VHS: VHS domain; Int 41.6 3.5E+02 0.0075 26.4 11.6 108 270-394 6-116 (140)
55 KOG1061 Vesicle coat complex A 41.5 1.3E+02 0.0028 37.5 9.6 249 321-591 122-422 (734)
56 PF13001 Ecm29: Proteasome sta 39.9 80 0.0017 37.6 7.6 130 255-395 299-442 (501)
57 PF11894 DUF3414: Protein of u 39.6 1.2E+03 0.026 32.2 19.7 54 341-395 585-638 (1691)
58 PF08926 DUF1908: Domain of un 39.1 78 0.0017 35.0 6.6 50 130-190 192-241 (282)
59 KOG1062 Vesicle coat complex A 38.4 9.6E+02 0.021 30.7 16.8 69 322-400 315-383 (866)
60 KOG4035 Coeffector of mDia Rho 38.1 5E+02 0.011 30.3 12.9 219 187-425 125-382 (411)
61 PF14500 MMS19_N: Dos2-interac 36.8 4.5E+02 0.0098 28.7 12.2 164 325-529 4-168 (262)
62 PF08569 Mo25: Mo25-like; Int 35.4 7.2E+02 0.016 28.3 18.8 192 310-532 66-266 (335)
63 PF04821 TIMELESS: Timeless pr 35.4 6.3E+02 0.014 27.6 14.8 72 380-468 133-213 (266)
64 smart00185 ARM Armadillo/beta- 34.7 62 0.0014 23.8 3.8 36 470-505 5-40 (41)
65 PF07560 DUF1539: Domain of Un 33.2 80 0.0017 31.1 5.1 35 268-302 67-101 (126)
66 PF15005 IZUMO: Izumo sperm-eg 32.2 1.4E+02 0.003 30.7 6.8 93 181-278 3-100 (160)
67 PF12719 Cnd3: Nuclear condens 31.6 7.3E+02 0.016 27.2 13.2 102 283-398 40-145 (298)
68 PF04821 TIMELESS: Timeless pr 31.4 2.1E+02 0.0046 31.2 8.6 88 464-553 96-209 (266)
69 PF13646 HEAT_2: HEAT repeats; 31.1 1.8E+02 0.0039 25.0 6.6 55 322-391 33-87 (88)
70 PF04826 Arm_2: Armadillo-like 30.9 7.3E+02 0.016 27.1 16.7 186 267-504 11-203 (254)
71 PF08767 CRM1_C: CRM1 C termin 30.0 7E+02 0.015 27.9 12.6 62 281-349 131-194 (319)
72 PF01347 Vitellogenin_N: Lipop 29.7 1.1E+02 0.0024 36.8 6.6 75 287-361 484-565 (618)
73 cd03569 VHS_Hrs_Vps27p VHS dom 29.7 5.7E+02 0.012 25.4 11.3 109 270-395 5-113 (142)
74 cd03561 VHS VHS domain family; 28.9 4.7E+02 0.01 25.3 9.7 89 293-394 20-110 (133)
75 PF10363 DUF2435: Protein of u 28.9 3.2E+02 0.007 25.2 8.1 76 268-355 3-78 (92)
76 KOG1248 Uncharacterized conser 27.3 1.6E+03 0.035 29.9 24.3 33 478-510 828-860 (1176)
77 COG3479 Phenolic acid decarbox 27.2 32 0.00069 34.3 1.2 20 39-59 66-85 (175)
78 PF06334 Orthopox_A47: Orthopo 27.1 45 0.00096 34.6 2.3 85 104-188 68-180 (244)
79 smart00288 VHS Domain present 26.8 3.8E+02 0.0082 26.1 8.7 76 244-320 57-133 (133)
80 PF00514 Arm: Armadillo/beta-c 26.3 1.3E+02 0.0029 22.8 4.4 36 470-505 5-40 (41)
81 PF11707 Npa1: Ribosome 60S bi 26.3 9.5E+02 0.021 26.9 16.8 170 310-505 47-236 (330)
82 PF04078 Rcd1: Cell differenti 26.2 1.9E+02 0.0042 31.9 7.1 78 452-530 65-149 (262)
83 PF12333 Ipi1_N: Rix1 complex 26.1 3.2E+02 0.0069 25.6 7.6 40 322-361 13-53 (102)
84 PF12783 Sec7_N: Guanine nucle 26.1 6.3E+02 0.014 25.1 10.4 79 312-395 65-145 (168)
85 KOG1293 Proteins containing ar 25.8 1.1E+03 0.025 29.3 13.8 30 368-397 505-534 (678)
86 PF05804 KAP: Kinesin-associat 25.3 2.3E+02 0.0049 35.6 8.3 76 469-551 323-398 (708)
87 COG5111 RPC34 DNA-directed RNA 24.7 32 0.00068 37.1 0.8 59 510-574 170-250 (301)
88 KOG1062 Vesicle coat complex A 24.4 1.6E+03 0.035 28.8 19.6 153 253-427 69-231 (866)
89 PF14278 TetR_C_8: Transcripti 24.2 1.9E+02 0.0041 24.1 5.4 67 258-329 6-76 (77)
90 cd03572 ENTH_epsin_related ENT 23.9 4.3E+02 0.0094 25.9 8.3 55 477-534 38-93 (122)
91 COG5369 Uncharacterized conser 23.2 1.5E+03 0.032 28.0 15.6 159 246-424 355-525 (743)
92 KOG2956 CLIP-associating prote 23.1 6E+02 0.013 30.5 10.5 88 258-354 310-406 (516)
93 PF00790 VHS: VHS domain; Int 22.5 4.6E+02 0.01 25.6 8.4 76 244-320 62-140 (140)
94 PF13513 HEAT_EZ: HEAT-like re 22.4 1.8E+02 0.0039 23.3 4.7 52 335-392 2-53 (55)
95 KOG0168 Putative ubiquitin fus 21.7 1.3E+03 0.028 29.9 13.4 74 318-395 209-283 (1051)
96 PF06371 Drf_GBD: Diaphanous G 21.4 3.3E+02 0.0071 27.1 7.3 94 452-550 83-185 (187)
97 PF05505 Ebola_NP: Ebola nucle 20.9 1.2E+03 0.026 28.4 12.3 21 658-678 461-481 (717)
98 smart00185 ARM Armadillo/beta- 20.1 1.7E+02 0.0038 21.3 3.9 34 314-347 6-39 (41)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-95 Score=802.89 Aligned_cols=442 Identities=44% Similarity=0.746 Sum_probs=420.7
Q ss_pred ChhhHHHHHHHHhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCChhhHhHhhcchhHhHHhhhcccCCCCC
Q 003320 113 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 192 (830)
Q Consensus 113 s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VVG~LEYDPe~p 192 (830)
++..|+.++.++ ++++||+||+++|+.|||++++++||++|+|+|+|+++|...|+|.|++|++||+|+|||||||++|
T Consensus 5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 355677777544 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcc--cccchhhHHhhHHHHHhhHHHHHHHhhcCHHHH
Q 003320 193 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 270 (830)
Q Consensus 193 ~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqTYRLqYLKDVVLa--RiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL 270 (830)
++++||+||...++|||||||.||.+++|||||||+||||||||| +++||++++++||+||||+++||++||+|.+|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 988899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc
Q 003320 271 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 350 (830)
Q Consensus 271 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh 350 (830)
.+||+++++++++.++|++++.|+||||+++|+||++.|.+||++|++.|||++++++++++|.++|.+++||+..++++
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCcc-----hHHHHHHHHhccCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 003320 351 DPNLLRSYVVRQEGIP-----LLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 421 (830)
Q Consensus 351 dPslvR~~i~~qe~~~-----Ll~~Li~~ll~d~d~gl--k~Ql~eaLk~LLDp~~m~~~--e~d~fL~~FY~~~~~~L~ 421 (830)
+|.++|++.+.++..+ ++++++++|+++.++.+ .+|++.++++||||++|.++ ++.+|+++||++|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 9999999999876544 89999999999988755 59999999999999999885 899999999999999998
Q ss_pred HHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHH
Q 003320 422 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 501 (830)
Q Consensus 422 ~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFl 501 (830)
+|...+... .++++.++.+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 888764211 146788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHhhHhhcc
Q 003320 502 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 571 (830)
Q Consensus 502 R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~eNik~Li~hlve~y~~~l~ 571 (830)
|.++.++|++|+||++++ |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.++
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999875
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.8e-64 Score=512.01 Aligned_cols=190 Identities=53% Similarity=0.956 Sum_probs=186.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCChhhHhHhhcchhHhHHhhhcccCCCCCCc-cchHHHhhhcC
Q 003320 127 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHV-QHHRNFLKEHV 205 (830)
Q Consensus 127 ~~~YI~KLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VVG~LEYDPe~p~~-~nHR~fL~~~a 205 (830)
+++||+||+++|++|||++++++||+||+|||+||++|+++|+|+|++|++||+|||||||||++|++ ++||+||++++
T Consensus 3 ~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~~ 82 (193)
T PF04802_consen 3 NENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEKA 82 (193)
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred CceeeeecCChHHHHHHHhhhhcceeeehhcccccchhhHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHH
Q 003320 206 VFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE 285 (830)
Q Consensus 206 ~FKEVVPI~d~~i~~KIHqTYRLqYLKDVVLaRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e 285 (830)
+|||||||+|+++++|||||||+||||||||||++||+++|+|||+|||||++||++||+|++||++||+++++++++.+
T Consensus 83 ~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~ 162 (193)
T PF04802_consen 83 KFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDE 162 (193)
T ss_pred CCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 003320 286 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 316 (830)
Q Consensus 286 ~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~L 316 (830)
+|+|+++||||||++||+||+++|.+||++|
T Consensus 163 ~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 163 RRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 9999999999999999999999999999986
No 3
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.13 E-value=0.56 Score=55.28 Aligned_cols=200 Identities=12% Similarity=0.164 Sum_probs=142.1
Q ss_pred hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 003320 318 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 397 (830)
Q Consensus 318 ~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 397 (830)
..++.+.+..+|.|+++.+|..++-.|..++.++...+. .+. +..++..++..+ .+.+.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~-~~~---~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQ-LLV---DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHH-Hhc---CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC
Confidence 456678899999999999999999988888888866433 222 244666666544 778999999999999999754
Q ss_pred CCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhc
Q 003320 398 YTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN 476 (830)
Q Consensus 398 ~~m~~~e~d~fL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~ 476 (830)
.. -++..|+.. ...| ..++..+ .+.+--.++|+++....++.. .-.++...
T Consensus 150 ~~--------~~~~l~~~~~~~~L-~~l~~~~------------------~~~vR~Rv~el~v~i~~~S~~-~~~~~~~s 201 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKL-KSLMSQS------------------SDIVRCRVYELLVEIASHSPE-AAEAVVNS 201 (503)
T ss_pred ch--------hHHHHhCcchHHHH-HHHHhcc------------------CHHHHHHHHHHHHHHHhcCHH-HHHHHHhc
Confidence 32 222233332 2222 2222210 112334677777777665544 44678888
Q ss_pred hHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHh--CC-CCcchHHHHHHHHHHHHh
Q 003320 477 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 477 nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~n--g~-R~NLlnSA~LElfefIr~ 552 (830)
+++.+++..+...+-.+++.|+-.+..+..-+.. ..||.+.++|.-+.+.+... .+ -..++=...+.||..+-.
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 9999999999999999999999999998884433 79999999999999998643 23 345666677788888876
No 4
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=1.7 Score=48.85 Aligned_cols=193 Identities=18% Similarity=0.125 Sum_probs=128.1
Q ss_pred HHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHH
Q 003320 275 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL 354 (830)
Q Consensus 275 ~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPsl 354 (830)
..+.++..+.++|.++..=|.++|.=-. --.+|+++|.+..+--.+.+.+..+|-.|+.+|.+++..+|-.
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iD---------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDID---------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhh---------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 3445667777888887777777665222 2346788876666656999999999999999999999999986
Q ss_pred HHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 003320 355 LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIA 434 (830)
Q Consensus 355 vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~ 434 (830)
...+++.. .+..|+..+-.+.+.+.++++.-|+-.|+=..-. ..-.||=-+....|...+-.+
T Consensus 159 -Qe~v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~------g~~~fl~~~G~~~L~~vl~~~------- 221 (342)
T KOG2160|consen 159 -QEQVIELG---ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP------GQDEFLKLNGYQVLRDVLQSN------- 221 (342)
T ss_pred -HHHHHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH------HHHHHHhcCCHHHHHHHHHcC-------
Confidence 44444422 6677788888888889999999999998843321 111222223445555544331
Q ss_pred cccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHH-HhhhccchhHHHHHHHHHHHHh
Q 003320 435 QSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVL-LLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 435 ~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl-~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
.+...+....+.|++..++.|.+.-. +++.-...+++ .+..+-+-...-+|++..=+.+
T Consensus 222 ----------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 222 ----------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred ----------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12334566788899999999987644 55555555554 3455555556666666554443
No 5
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.1 Score=60.15 Aligned_cols=264 Identities=14% Similarity=0.112 Sum_probs=155.5
Q ss_pred HHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHh-------c-
Q 003320 291 VHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR-------Q- 362 (830)
Q Consensus 291 V~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~-------q- 362 (830)
..+.++-|.+.+..+-+.=.++|....+....+-+..+...-..-++....+||.++++ |+..++-.-.. +
T Consensus 7 ~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~-d~~im~v~g~lEydp~~~~~ 85 (458)
T KOG2175|consen 7 QRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFD-DECIMDVIGCLEYDPAVPQS 85 (458)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhc-cccccccccccccCccCCCh
Confidence 34455556666665555555666666555444444444443333445556666666666 55544422111 0
Q ss_pred ----CCcchHHHHHHHHhccCChhHHHHHHHHHHHhc--CC---C--CCCch-----------hhhHHHHHHHHhhHHHH
Q 003320 363 ----EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL--DS---Y--TLSGA-----------QRDTIIEIFYEKHLGQL 420 (830)
Q Consensus 363 ----e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL--Dp---~--~m~~~-----------e~d~fL~~FY~~~~~~L 420 (830)
+...+. ...+..+...+|++..++-+.+|+.. |. + ....+ .+..+++++++..- +
T Consensus 86 k~HR~~l~~~-~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~--~ 162 (458)
T KOG2175|consen 86 KKHREFLSLL-AKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEK--F 162 (458)
T ss_pred hhhHHHHHhh-ccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCch--H
Confidence 111122 24555566789999999999877643 42 1 11111 34567777776641 1
Q ss_pred HHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchH---HHHHHH-hhhccchhHHHH
Q 003320 421 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNV---VDKVLL-LTRRREKYLVVA 496 (830)
Q Consensus 421 ~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nl---l~kVl~-Ll~~~~K~L~La 496 (830)
+.+|++.-..+. ...++-..+.|+|+..|.+.+.|.+..+..+...-+ +-.++. .++..++-++.+
T Consensus 163 l~eLf~~l~~~~----------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~ 232 (458)
T KOG2175|consen 163 LIELFARLRSES----------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSA 232 (458)
T ss_pred HHHHHHHhcCCc----------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHH
Confidence 344444211100 012455688999999999999999987765332222 333332 244558888999
Q ss_pred HHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHhhHhhccccc
Q 003320 497 AVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFE 574 (830)
Q Consensus 497 AlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~eNik~Li~hlve~y~~~l~~i~ 574 (830)
|.+.+.+++-.+= .++++...+-..+.- .+..--|+++|+.++.||+-+.+..+.+..+.--.+.+.+....
T Consensus 233 ~~di~~~~ve~~~-----~~i~~~~~~~~~~~~-~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~ 304 (458)
T KOG2175|consen 233 ATDILARLVEMSP-----SMIRSFTLGEALDPD-DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA 304 (458)
T ss_pred HHHHHHHHHhcCH-----HHHHHHHHHhhcCch-hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc
Confidence 9998888885433 333333332222221 33345689999999999999988888888888888888887765
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.63 E-value=0.98 Score=52.28 Aligned_cols=231 Identities=13% Similarity=0.158 Sum_probs=132.2
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh-cCCCC
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 399 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L-LDp~~ 399 (830)
+++.+...+.++++.+|..|+--+..+...+|+.++.. ++..|.+ ++.|.++|+......++..+ -.+..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 46778888999999999999999999999999987652 3444444 45999999988888888777 21111
Q ss_pred CCchhhhHHHHHHHHhhH-------HHHHHHHHhcCCCcccccccCCCCccccCc---HHHHHHH------------HHH
Q 003320 400 LSGAQRDTIIEIFYEKHL-------GQLIDVITASCPQEGIAQSASSGGRVESTK---PEILSNI------------CEL 457 (830)
Q Consensus 400 m~~~e~d~fL~~FY~~~~-------~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~---~~ll~~l------------~EL 457 (830)
.. .++..+|.... +|+..-++..... .. ...... ..++..+ .|.
T Consensus 186 ----~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~-~~--------~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 ----YK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRR-YA--------PMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp ----HT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT-ST--------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hh-hhHHHHHHHhhhcccccchHHHHHHHHHHHh-cc--------cCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 00 34555554422 2322222221000 00 000001 1122222 222
Q ss_pred HHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCc
Q 003320 458 LCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 537 (830)
Q Consensus 458 L~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~N 537 (830)
...+..-... .-+...++..+.+++.+++.-++..|++.+..++... . ..++.+-+..|.-..+.+.
T Consensus 252 ~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~----~~v~~~~~~~~~l~~~~d~ 318 (526)
T PF01602_consen 252 IRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-----P----PAVFNQSLILFFLLYDDDP 318 (526)
T ss_dssp HHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----H----HHHGTHHHHHHHHHCSSSH
T ss_pred HHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-----c----hhhhhhhhhhheecCCCCh
Confidence 2222211111 1144556677778888888888889999988887665 1 2223343344433345556
Q ss_pred chHHHHHHHHHHHH-hhChHHHHHHHHHhhHhh---cccccchhhHHHHHHhhh
Q 003320 538 LLNSAVLELFEYIR-KENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKYE 587 (830)
Q Consensus 538 LlnSA~LElfefIr-~eNik~Li~hlve~y~~~---l~~i~yv~tf~~L~~rye 587 (830)
-+-...|+++-.+- .+|++.++..|.+--.+. =-....+.+...+..+|.
T Consensus 319 ~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 319 SIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 67777777766654 579999998888543221 112244556666776774
No 7
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.54 E-value=15 Score=42.16 Aligned_cols=240 Identities=19% Similarity=0.283 Sum_probs=136.9
Q ss_pred cchhhHHhhHHHHHhhHHHHHHHhhcC--HHHHHHHHHHhC----------C-CCCcHHhHHHHHHHHHHHHHhhhccCh
Q 003320 240 LDEATVANLNSIIHGNNAYVVSLLKDD--STFIQELFARLR----------S-PTTLEESKKNLVHFLHEFCGLSKSLQM 306 (830)
Q Consensus 240 LDD~t~s~LnSlIffNqveIV~~Lq~d--~~FL~eLF~~l~----------~-~~~~~e~rrdlV~FL~E~c~isK~LQ~ 306 (830)
.|+..+..+..++.+ ||.+|-.+ ..++.++++.|- + .......++-++.|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 566777777766654 66665332 357888888775 1 111224566777888888888888775
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc--ChHHHHHHH-------------------------
Q 003320 307 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ--DPNLLRSYV------------------------- 359 (830)
Q Consensus 307 ~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh--dPslvR~~i------------------------- 359 (830)
++-..+.+.+ ++.++...+...|..+.-++..+++- +...+..++
T Consensus 185 ~~~~~ll~~l--------~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQSL--------LNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHHH--------HHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 5333344333 45566666677777777777777776 222222221
Q ss_pred ------Hhc--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC-CCCCch-----hhhHHHHHHHHhhHHHHHHHHH
Q 003320 360 ------VRQ--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGA-----QRDTIIEIFYEKHLGQLIDVIT 425 (830)
Q Consensus 360 ------~~q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-~~m~~~-----e~d~fL~~FY~~~~~~L~~pL~ 425 (830)
+|. .+..+++.|++.+ . ++.+...+..++.+|+.. +.+... -|--|=+-||...++.|++...
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 111 1123344444433 2 244455677777777765 333221 2334445677777777776664
Q ss_pred hcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhh--chHHHHHHHhhhccchhHHHHHHHHHHH
Q 003320 426 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL--NNVVDKVLLLTRRREKYLVVAAVRFVRT 503 (830)
Q Consensus 426 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~--~nll~kVl~Ll~~~~K~L~LaAlRFlR~ 503 (830)
.... ..+.. .+--|++.+++=+.-+ ++. ..++.=+++-+...+.-++.++|..+..
T Consensus 334 ~~~~---------------~~k~~----yL~ALs~ll~~vP~~v---l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 334 EADD---------------EIKSN----YLTALSHLLKNVPKSV---LLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hcCh---------------hhHHH----HHHHHHHHHhhCCHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4210 01222 2334555566444221 222 2355666666778888899999999999
Q ss_pred HhcCchhHHHHHH
Q 003320 504 ILSRHDEHLINHF 516 (830)
Q Consensus 504 iI~l~Defy~ryi 516 (830)
++.-+.+....|+
T Consensus 392 ~l~~~~~~i~~hl 404 (415)
T PF12460_consen 392 ILEEAPELISEHL 404 (415)
T ss_pred HHHcCHHHHHHHH
Confidence 9988876666554
No 8
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.11 E-value=4.3 Score=44.72 Aligned_cols=255 Identities=17% Similarity=0.287 Sum_probs=128.3
Q ss_pred ccccchhhHHhhHHHHHhhHHHHHHHhhcCHH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHH
Q 003320 237 ARVLDEATVANLNSIIHGNNAYVVSLLKDDST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 312 (830)
Q Consensus 237 aRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~l 312 (830)
++.+++..++.+..+=-.....=.+.+..+.. .+-.|+... +...+-.+-++.++-++|.-.. .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 46677777777666544433332234444431 222344443 2344555666667777666543 45556
Q ss_pred HHHHHhcC---cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHH
Q 003320 313 FRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 389 (830)
Q Consensus 313 f~~Lv~~G---L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~e 389 (830)
|..+.... .+..+-..+.++|..+...+.=+|..++-+++..-.... ++.=..+++.|.. .+...+.+++.-...
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-~l~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS-QLSSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH--TT-HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH-hhcCCCcchHHHHHH
Confidence 66665422 455554588899999999999999999999886544311 0000235555555 233344555555556
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcc-
Q 003320 390 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR- 468 (830)
Q Consensus 390 aLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr- 468 (830)
+|..||-.+ ..|..|.+ .+.+..|+.-|... .. .. +....+++.+ ++||+-.=+|.
T Consensus 173 ~L~~LL~~~----~~R~~f~~---~~~v~~l~~iL~~~-~~----~~-------~~~~~Ql~Y~----~ll~lWlLSF~~ 229 (312)
T PF03224_consen 173 CLQNLLRSK----EYRQVFWK---SNGVSPLFDILRKQ-AT----NS-------NSSGIQLQYQ----ALLCLWLLSFEP 229 (312)
T ss_dssp HHHHHHTSH----HHHHHHHT---HHHHHHHHHHHH---------------------HHHHHHH----HHHHHHHHTTSH
T ss_pred HHHHHhCcc----hhHHHHHh---cCcHHHHHHHHHhh-cc----cC-------CCCchhHHHH----HHHHHHHHhcCH
Confidence 777776322 13333443 44556555533210 00 00 1123344333 23444444443
Q ss_pred -hhhhHhhchHHHHHHHhhh--ccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHH
Q 003320 469 -IKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPI 525 (830)
Q Consensus 469 -iK~~il~~nll~kVl~Ll~--~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PI 525 (830)
+-..+..++++..++.+++ .|+|..|++ +-.+|+++.-..+.+..-|+.+++..-+
T Consensus 230 ~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~-la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 230 EIAEELNKKYLIPLLADILKDSIKEKVVRVS-LAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH--SHHHHHHH-HHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred HHHHHHhccchHHHHHHHHHhcccchHHHHH-HHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 3334555567777777754 689999985 8899999998888777777777766443
No 9
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=9.8 Score=45.23 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=147.5
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH-hHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-QQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~-~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
-|..|...+..+.. ....|.+.--|..+|.-. +=+|+ .. -..+|++|...+.+.|..+...|+=.|.++
T Consensus 195 ~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk-~P~P~~~~--------v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK-NPSPPFDV--------VAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred chHHHHHHhccccc-hHHHHHHHHHHHHHHcCC-CCCCcHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34555555543332 345566666666666532 21121 11 135789999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
.++.+..++-. +. .-....|+++|-..... .+ .-|||++-.- ..|. |..-+.--+..+-.-+.+|+..
T Consensus 265 sdg~ne~iq~v-i~---~gvv~~LV~lL~~~~~~---v~-~PaLRaiGNI--vtG~--d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 265 TDGSNEKIQMV-ID---AGVVPRLVDLLGHSSPK---VV-TPALRAIGNI--VTGS--DEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred hcCChHHHHHH-HH---ccchHHHHHHHcCCCcc---cc-cHHHhhccce--eecc--HHHHHHHHhcChHHHHHHHhcc
Confidence 99999876643 33 22334556655443221 11 3456665331 1111 1111111111111122233332
Q ss_pred CCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 428 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 428 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
.+.+. +=.-.|=.++..+. ++-.-...|+.-+++..++.+|...+.-++--|.--+.++..-
T Consensus 333 s~~~~-----------------ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 333 SPKES-----------------IKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred Ccchh-----------------HHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 12111 10112333444343 4443345788889999999999999988998999999999988
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 552 (830)
.+.--.+||++.++++|+.++|..--. =+=++||+=++.|.+
T Consensus 395 g~~~qi~yLv~~giI~plcdlL~~~D~---~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 395 GTPEQIKYLVEQGIIKPLCDLLTCPDV---KIILVALDGLENILK 436 (514)
T ss_pred CCHHHHHHHHHcCCchhhhhcccCCCh---HHHHHHHHHHHHHHH
Confidence 889999999999999999999943322 347899999999976
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=92.45 E-value=36 Score=42.50 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=96.2
Q ss_pred hHhHHHHHHHHHhcCc-------HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 003320 306 MVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 378 (830)
Q Consensus 306 ~~~R~~lf~~Lv~~GL-------~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d 378 (830)
+.-|.--.++|..-+. ...|..+|.+.++-||.+|+=-+.-+...+|.++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 4456556666665543 344566678889999988877777788888876532 235566666 6789
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHH
Q 003320 379 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 458 (830)
Q Consensus 379 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL 458 (830)
.++++.....-+|..+.... +.+ +... ..++.+|..-|.+ ...+....|+++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99999877766666664211 111 1111 2222333333311 1234556788888
Q ss_pred HHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 459 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 459 ~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
+-......- -..+++.++...+....--++++|+|++=.+.
T Consensus 244 ~~y~P~~~~------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDKE------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCcH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 654322111 12467788888777777888888888766554
No 11
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=92.36 E-value=0.23 Score=46.93 Aligned_cols=64 Identities=13% Similarity=0.276 Sum_probs=56.1
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHH
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNV 70 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~V 70 (830)
+...|.+.+-.++.++++..|.++-.|+++..+..+|.+.+ .-++|+|++.+-+....+.|++.
T Consensus 47 ~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~--~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 47 RSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDD--CVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp TEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETT--CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCC--eEEEEecCCHHHHHHHHHHHhcc
Confidence 45567788878899999999999999999999999999986 48999999999999999888764
No 12
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=92.05 E-value=0.24 Score=47.41 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=58.4
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc--CceeEeccCCcc------ccccccccCccchhHHHHHHHHHhh
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDPEYS------TELALSFQEPTGCSYIWDNICNVQR 72 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~~~g------~DlALSFQe~~GC~~IWe~I~~VQ~ 72 (830)
...+|++|.+..+.++|.+.|.++-.|++++ +.-++|+-.+.. .-+++.|..++.|+++++.|..+|.
T Consensus 47 ~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~~ 122 (122)
T cd00835 47 GKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAKK 122 (122)
T ss_pred CcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhhC
Confidence 5789999999989999999999999999999 899999733211 2399999999999999999998873
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.00 E-value=7.5 Score=45.07 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=113.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
++.+...+.+++. .-|+.++.-+..++.... .++..++++.+...|.+.|+.++.+|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPSP--YVRKKAALALLKIYRKDP------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCH------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCch--HHHHHHHHHHHHHhccCH------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 4445555555543 667777777777666533 233333678899999999999999999888777 6
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhh--hHHHHHHHHh----hHHHHHHH
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQR--DTIIEIFYEK----HLGQLIDV 423 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~--d~fL~~FY~~----~~~~L~~p 423 (830)
++|...-..+ ..++..|.+. +...++=++..++.+|+.+.-.+ .... ..+++..... ....++.-
T Consensus 181 ~~~~~~~~~~-----~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 181 CNDDSYKSLI-----PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp CTHHHHTTHH-----HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhH-----HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 6665411111 0122333332 26677767777666666553221 1112 2223222211 11111111
Q ss_pred HHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHH
Q 003320 424 ITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRT 503 (830)
Q Consensus 424 L~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~ 503 (830)
..... .+ .....++..++..|.-++.+....+|+..++ .+..+.......+.-..++++
T Consensus 252 ~~~i~-------------~l-~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~-----~L~~l~~~~~~~v~~~~~~~~-- 310 (526)
T PF01602_consen 252 IRLII-------------KL-SPSPELLQKAINPLIKLLSSSDPNVRYIALD-----SLSQLAQSNPPAVFNQSLILF-- 310 (526)
T ss_dssp HHHHH-------------HH-SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHH-----HHHHHCCHCHHHHGTHHHHHH--
T ss_pred HHHHH-------------Hh-hcchHHHHhhHHHHHHHhhcccchhehhHHH-----HHHHhhcccchhhhhhhhhhh--
Confidence 11000 00 0122356677777777777665557766553 233343333233332222222
Q ss_pred HhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 003320 504 ILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 551 (830)
Q Consensus 504 iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 551 (830)
++...|+.+.|... ++++..-.+..|.-. -+-||.+|++
T Consensus 311 ~l~~~~d~~Ir~~~--------l~lL~~l~~~~n~~~-Il~eL~~~l~ 349 (526)
T PF01602_consen 311 FLLYDDDPSIRKKA--------LDLLYKLANESNVKE-ILDELLKYLS 349 (526)
T ss_dssp HHHCSSSHHHHHHH--------HHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred eecCCCChhHHHHH--------HHHHhhcccccchhh-HHHHHHHHHH
Confidence 44445555544322 444444444444433 6778888884
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.79 E-value=33 Score=40.63 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=96.2
Q ss_pred HHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc-CCh-hHHHHHH
Q 003320 311 RLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGE-DMHCQFL 388 (830)
Q Consensus 311 ~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d-~d~-glk~Ql~ 388 (830)
..+...++.|+|+.+-..|.++|.-++..++|+|..+.. .|.. .+|+.++ .++..|++.+... .|+ .-...+.
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~---gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQ---GIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhC---CHHHHHHHHHhccccCCcccchhhh
Confidence 456778889999999999999999999999999999999 5553 6788774 3566666655542 333 1111222
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcc
Q 003320 389 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 468 (830)
Q Consensus 389 eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr 468 (830)
..++..= +|....-..++. =|+..++.|+.-+.. ..+....-.+|-|.+.. ++-.
T Consensus 268 g~~~f~g---~la~~~~~~v~~-~~p~~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~~ 322 (503)
T PF10508_consen 268 GRMKFFG---NLARVSPQEVLE-LYPAFLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STVE 322 (503)
T ss_pred hHHHHHH---HHHhcChHHHHH-HHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCHH
Confidence 3332220 000001112222 234444455432211 11223334455555443 3444
Q ss_pred hhhhHhhc------hHHHHHHHhhhccchhHHHHHHHHHHHHhcCch
Q 003320 469 IKCNFLLN------NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 509 (830)
Q Consensus 469 iK~~il~~------nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~D 509 (830)
-|..++.+ +++.++....++...-+++.|+..+-.++....
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 55555222 244555555566666789999999999975543
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.74 E-value=6.2 Score=35.49 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 348 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii 348 (830)
.++.|...+.+++ ..-|..++.-|..+|.-+ ......+++.|.++.+-..|.+++..++..++-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 4455555555544 567778887777766542 223445567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 349 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 349 ehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
...|.. +..+.+ .-++..|++.|- +.+..++.+...+|..|
T Consensus 78 ~~~~~~-~~~~~~---~g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 AGPEDN-KLIVLE---AGGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCcHHH-HHHHHH---CCChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 887753 443443 236777777654 44777888888887765
No 16
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=89.27 E-value=0.62 Score=43.59 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=55.8
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHH
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICN 69 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~ 69 (830)
...+|.+++..++.++++..|.++-.|.+...+..+|.+.+ .=++|+|++.+.+....+.+++
T Consensus 40 ~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~--~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 40 NTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN--CVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC--cEEEEeeCCHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999986 4699999999999988777664
No 17
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.06 E-value=6.6 Score=44.84 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=96.6
Q ss_pred HHHHHhhcCHHHHHHHHHH---------hCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 003320 258 YVVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 328 (830)
Q Consensus 258 eIV~~Lq~d~~FL~eLF~~---------l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~ 328 (830)
-|+.|+-.|..+++.+... +.-.+.....|-++++|++.|+.+-+..+. +..|+...|--+
T Consensus 47 RilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvai 116 (371)
T PF14664_consen 47 RILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHH
Confidence 3566777777887777652 122333467899999999999998543321 255667777677
Q ss_pred HcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHH
Q 003320 329 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTI 408 (830)
Q Consensus 329 L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~f 408 (830)
..+++...|..+.++|.-+.=.+|.++-. -.| +..|++.++. ....+...++.++-.|||.... ..|
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~t-----R~y 183 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPRT-----RKY 183 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcch-----hhh
Confidence 77789999999999999999999998643 222 3444555444 2233677788888888886542 122
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q 003320 409 IEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 409 L~~FY~~~~~~L~~pL~~~ 427 (830)
+..- .-+..|++|+.+.
T Consensus 184 l~~~--~dL~~l~apftd~ 200 (371)
T PF14664_consen 184 LRPG--FDLESLLAPFTDF 200 (371)
T ss_pred hcCC--ccHHHHHHhhhhh
Confidence 2222 2267788888763
No 18
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=86.28 E-value=80 Score=37.51 Aligned_cols=283 Identities=17% Similarity=0.236 Sum_probs=161.5
Q ss_pred HHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 003320 250 SIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 329 (830)
Q Consensus 250 SlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L 329 (830)
.++.-+..+.+++|+..+.|+..++.-+..+.. +-||-.+.++=+ +..+.....-|.+.+|++-+-..|
T Consensus 3 ~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L 71 (475)
T PF04499_consen 3 CLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLL 71 (475)
T ss_pred hhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHh
Confidence 355667788999999999999999999986553 556666666444 556777888888999998888888
Q ss_pred c-CCCchhhhhhhHHHHHHHhcChH-------------HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 330 Q-SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 330 ~-~~d~~ir~~atDIL~~iiehdPs-------------lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
. ..+..+...|+|+|..||....+ ++|. +.+ ...+..|++.|+.+...........++-.||
T Consensus 72 ~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~S---~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 72 SPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LVS---EETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-HhC---hHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 6 44556778899999888775432 2232 222 3466778888886322222233444444444
Q ss_pred CCCC--------CC----c-hhhh-----HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHH
Q 003320 396 DSYT--------LS----G-AQRD-----TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICEL 457 (830)
Q Consensus 396 Dp~~--------m~----~-~e~d-----~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~EL 457 (830)
-..+ +. . .+++ ..+..|-++ ++.+.+-|... +....-.+..+......... =-+||||
T Consensus 148 Rknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~-l~~f~~lL~~~--~~~~~l~Tt~G~l~~PLG~~-RlkI~EL 223 (475)
T PF04499_consen 148 RKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPR-LPDFHKLLLNP--PKKPPLETTFGVLIPPLGFE-RLKICEL 223 (475)
T ss_pred HhcccccchhhccccccCCCCccchhhHHHHHHHHHHh-HHHHHHHHhch--hhccccccCCCCCCCCcchH-HHHHHHH
Confidence 2111 00 0 1222 234444333 34444444332 11111111111101000000 1357777
Q ss_pred HHHHHhhCCcc------hhhhHhhchHH-HHHHHhhhccchhHHHHHHHHHHHHhc------------------------
Q 003320 458 LCFCVLHHPYR------IKCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILS------------------------ 506 (830)
Q Consensus 458 L~Fcv~~H~yr------iK~~il~~nll-~kVl~Ll~~~~K~L~LaAlRFlR~iI~------------------------ 506 (830)
++=...-...- ....+...+.. .+.+.- +.+...-..
T Consensus 224 iAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (475)
T PF04499_consen 224 IAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ------------LQDALNDLEIDDEDIDDNSMDDESDSSEDSREL 291 (475)
T ss_pred HHHHHhCCCccccCCccccchhcCcHHHHHHHHHH------------HHhhhhcccCCccccccccccccccCccccccc
Confidence 76665444331 11122222221 111111 111100000
Q ss_pred -------------------------------------Cch----hHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHH
Q 003320 507 -------------------------------------RHD----EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLE 545 (830)
Q Consensus 507 -------------------------------------l~D----efy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LE 545 (830)
.++ +++..-|+..++|.-++++|..- +=+|.|...|-+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~d 370 (475)
T PF04499_consen 292 EVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKY-PWNNFLHNVVED 370 (475)
T ss_pred cccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHHH
Confidence 011 56888999999999999999886 667999999999
Q ss_pred HHHHHH-----hhChHHHHHHHHH
Q 003320 546 LFEYIR-----KENLKSLVKYIVD 564 (830)
Q Consensus 546 lfefIr-----~eNik~Li~hlve 564 (830)
++-.|- ...-+.|+.||.+
T Consensus 371 iIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 371 IIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred HHHHHhCCCCcccccHHHHHHHHh
Confidence 999998 4556789999984
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=85.38 E-value=1.1e+02 Score=42.44 Aligned_cols=226 Identities=13% Similarity=0.154 Sum_probs=140.2
Q ss_pred HHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhh
Q 003320 258 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLV 337 (830)
Q Consensus 258 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir 337 (830)
+..+.+.+. ..++-|...+++++ ..-++.++..|.- +++.-. .+| ..+++.|.++.+-..|.+++..++
T Consensus 437 e~~~aIi~~-ggIp~LV~LL~s~s--~~iQ~~A~~~L~n---La~~nd-enr----~aIieaGaIP~LV~LL~s~~~~iq 505 (2102)
T PLN03200 437 GLWEALGGR-EGVQLLISLLGLSS--EQQQEYAVALLAI---LTDEVD-ESK----WAITAAGGIPPLVQLLETGSQKAK 505 (2102)
T ss_pred HHHHHHHHc-CcHHHHHHHHcCCC--HHHHHHHHHHHHH---HHcCCH-HHH----HHHHHCCCHHHHHHHHcCCCHHHH
Confidence 344444332 35777777777643 4556666655543 443221 122 346789999999999999999999
Q ss_pred hhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhH
Q 003320 338 LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHL 417 (830)
Q Consensus 338 ~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~ 417 (830)
..|+-.|..+.-++++ +|..+.+.. -+..|++.| .+.+...+.....+|..|+-... .+ .+
T Consensus 506 eeAawAL~NLa~~~~q-ir~iV~~aG---AIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d-----~~---------~I 566 (2102)
T PLN03200 506 EDSATVLWNLCCHSED-IRACVESAG---AVPALLWLL-KNGGPKGQEIAAKTLTKLVRTAD-----AA---------TI 566 (2102)
T ss_pred HHHHHHHHHHhCCcHH-HHHHHHHCC---CHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccc-----hh---------HH
Confidence 9999898888777666 466554422 334456554 44567777777778777753321 11 11
Q ss_pred HHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHh--hCCcchhhhHhhchHHHHHHHhhhccchhHHH
Q 003320 418 GQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL--HHPYRIKCNFLLNNVVDKVLLLTRRREKYLVV 495 (830)
Q Consensus 418 ~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~--~H~yriK~~il~~nll~kVl~Ll~~~~K~L~L 495 (830)
..|++-|.. ..+....+.++.|..++. ++.-..+.-+..++.+..+..|+++..+-.+-
T Consensus 567 ~~Lv~LLls-------------------dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk 627 (2102)
T PLN03200 567 SQLTALLLG-------------------DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQE 627 (2102)
T ss_pred HHHHHHhcC-------------------CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHH
Confidence 223322211 112334445555544433 11111122234567899999999998888888
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhC
Q 003320 496 AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANG 533 (830)
Q Consensus 496 aAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng 533 (830)
-|...+=++..-+.+.. .-++..+.+.|++..+..++
T Consensus 628 ~Aa~iLsnL~a~~~d~~-~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 628 KAASVLADIFSSRQDLC-ESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred HHHHHHHHHhcCChHHH-HHHHHcCCHHHHHHHHhcCC
Confidence 88888888887766654 44889999999999886543
No 20
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.96 E-value=97 Score=37.20 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=126.8
Q ss_pred HHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 003320 313 FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 392 (830)
Q Consensus 313 f~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 392 (830)
.+..++.|-.+++-..+.++...++--|+=-|-.|+-+.|. .|.|++... .+.-|..++.......+.-+++=+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g---~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCG---ALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhc---chHHHHHHhccccchHHHHHHHHHHH
Confidence 44567788888888888888888887777666666766666 599888743 33334444444333455556666666
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhh
Q 003320 393 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 472 (830)
Q Consensus 393 ~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 472 (830)
-|.-..+-..+ -+. -..+++.|..-|. ...++++...|=.|+|.+-+-.-.| -.
T Consensus 221 Nlcrgk~P~P~-~~~-----v~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~i-q~ 274 (514)
T KOG0166|consen 221 NLCRGKNPSPP-FDV-----VAPILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKI-QM 274 (514)
T ss_pred HHHcCCCCCCc-HHH-----HHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHH-HH
Confidence 66533321111 000 0122333333332 2345667777777777776555544 35
Q ss_pred HhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHH
Q 003320 473 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 546 (830)
Q Consensus 473 il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LEl 546 (830)
++.-.+..|+..||....--++..|||.+=+|+ ..++.-..-+|.++++.-+.. +..+.+..++--.||-=+
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~~-ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLSN-LLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHHHHHH-HhccCcchhHHHHHHHHH
Confidence 777789999999988777778899999999955 556667778888877755544 445455555555555533
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=82.65 E-value=52 Score=33.99 Aligned_cols=186 Identities=14% Similarity=0.148 Sum_probs=101.4
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHH
Q 003320 278 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 357 (830)
Q Consensus 278 ~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~ 357 (830)
+.++.+=+.|.+++.-|+.++.-. ........++..|- .++..|...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 445556678999999999988755 11122233433333 67777878888888888888999888877665554544
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH-HHHHHhcCCCcccccc
Q 003320 358 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL-IDVITASCPQEGIAQS 436 (830)
Q Consensus 358 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L-~~pL~~~~p~~~~~~~ 436 (830)
++- .++..|++.+ .+...-++....++|..+...-++ ...+ +..+...+.
T Consensus 91 ~~~-----~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~----------------~~~~~~~~l~~~~~------- 141 (228)
T PF12348_consen 91 YAD-----ILLPPLLKKL-GDSKKFIREAANNALDAIIESCSY----------------SPKILLEILSQGLK------- 141 (228)
T ss_dssp HHH-----HHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H------------------HHHHHHHHHHTT-------
T ss_pred HHH-----HHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCc----------------HHHHHHHHHHHHHh-------
Confidence 432 2444555433 334455666666777777654321 0222 222322211
Q ss_pred cCCCCccccCcHHHHHHHHHHHHHHHhhCC---cchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHH
Q 003320 437 ASSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 504 (830)
Q Consensus 437 ~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~---yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~i 504 (830)
...+.+=...+++|..++..|+ -.+........+..-+.+++.-.+.-++-+|-++|..+
T Consensus 142 --------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 --------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp ---------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1123444577889999999998 34444443466777788888888888888888888775
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=78.39 E-value=8.8 Score=34.50 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=55.4
Q ss_pred HhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 003320 473 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 549 (830)
Q Consensus 473 il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 549 (830)
+...+++..++.++...+..++..|++.+.++....++ +..++++.+.+.++++++... ...+...|+-=|-.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 44667888999999988889999999999997766544 667888899999999988653 334555555444333
No 23
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.16 E-value=1.7e+02 Score=34.62 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=118.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCchhh------hhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc-CChh
Q 003320 310 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 382 (830)
Q Consensus 310 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir------~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g 382 (830)
..|+.+|++.+++..+---+..=|.+++ ....-++..+++.+|++.-. +++| .|+..|.+.+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~-~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTE-IVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHH-HHHh---hHHHHHHHHHhcccCcch
Confidence 3689999999999988777654444332 22234556688888886443 4553 6777777754332 3345
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHH
Q 003320 383 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 462 (830)
Q Consensus 383 lk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv 462 (830)
-+...+|+|-+||...+-.. .+-.-| ..++.|++-|.. ... .. + . +.-..++..++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~-~~~~~l-----~GiD~lL~~la~----yk~-~d--P-~--~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR-KLLGPL-----DGIDVLLRQLAV----YKR-HD--P-A--TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh-hhhcCc-----ccHHHHHhhcch----hhc-cC--C-C--CcCHHHHHHHHHHHHHHHh
Confidence 56678899999996654210 000000 112333333321 110 00 0 0 1124467888999999888
Q ss_pred hhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCch-hHHHHHHHhhCCHHHHHHHHHHh
Q 003320 463 LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 532 (830)
Q Consensus 463 ~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~D-efy~ryiIk~nLf~PIl~~f~~n 532 (830)
.+-.-|- .|..-+.+-...+.+ +- .|..+=+|+|++-.+..-.| .-+..-++...=++.||.+|...
T Consensus 306 m~~~nr~-~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANRE-RFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhhh-hhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 8776543 344444444444444 22 68889999999998775555 14555566667778888888743
No 24
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=73.43 E-value=6.3 Score=37.42 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=51.7
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccC--ceeEec-----cCC-ccccccccccCccchhHHHHHHHHHhh
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWR-----DPE-YSTELALSFQEPTGCSYIWDNICNVQR 72 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqe--TLIvWt-----e~~-~g~DlALSFQe~~GC~~IWe~I~~VQ~ 72 (830)
...+|++|.+.-+.++|.+.|.++-.|+..+. .-++|+ |.+ .-.-+++.|..++=+.++...|.+.|.
T Consensus 46 ~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 46 GKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp CEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999987664 568893 211 124689999999999999999988875
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.05 E-value=1.5e+02 Score=32.38 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=56.1
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 003320 478 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 551 (830)
Q Consensus 478 ll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 551 (830)
.+...+.|+.......+.-|||.+=++= .+.-..++|+....+..++.+|..+.++.||++ +|-||+-|.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 4566788888888888888888765533 344478999999999999999999999999985 677888773
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=72.28 E-value=4.2e+02 Score=37.30 Aligned_cols=213 Identities=16% Similarity=0.161 Sum_probs=150.3
Q ss_pred hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 003320 318 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 397 (830)
Q Consensus 318 ~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 397 (830)
..|-++.|...|.+++..++..|+.+|..+....+.... .++..+..+. |+.. +...+..++.+..-+|-.|...
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~-avv~agaIpP---LV~L-Lss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE-SLATDEIINP---CIKL-LTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH-HHHHcCCHHH---HHHH-HhcCChHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999998888644 4555444332 3333 3556777888888888878752
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhch
Q 003320 398 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 477 (830)
Q Consensus 398 ~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 477 (830)
. ...++-.+.+ ..+++-|++.|... ...+-...++-|..+.++..- +--+...+
T Consensus 682 ~--~~~q~~~~v~---~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~--~~ei~~~~ 735 (2102)
T PLN03200 682 I--KENRKVSYAA---EDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEV--AAEALAED 735 (2102)
T ss_pred C--CHHHHHHHHH---cCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchH--HHHHHhcC
Confidence 2 1112221211 23566666666331 224556677888888887763 44567788
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHhcCc--hhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh---
Q 003320 478 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--- 552 (830)
Q Consensus 478 ll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~--Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~--- 552 (830)
.+....++|++...-.+=.|.+-+-.+..-. |+-+-.|+-.-+...|.++++... +-+|-.+|-.||-+.++-+
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcc
Confidence 8999999999887777777777776654432 445678999999999999998655 5567888888998888865
Q ss_pred ----------------hChHHHHHHH
Q 003320 553 ----------------ENLKSLVKYI 562 (830)
Q Consensus 553 ----------------eNik~Li~hl 562 (830)
+++.+|+.+|
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCL 840 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHH
Confidence 5677787777
No 27
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=72.22 E-value=1.1e+02 Score=31.37 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=72.3
Q ss_pred HHHHHHHhcCcH-----------HHHHHHHcCC-CchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 003320 311 RLFRDLMNEGIF-----------DIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 378 (830)
Q Consensus 311 ~lf~~Lv~~GL~-----------~vi~~~L~~~-d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d 378 (830)
.-|..|++||+. +++.++-+.. |..+...+..||-.++..+|.+ .+.+.+ ..-+..|+..|-.
T Consensus 39 ~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~---evt~~~Li~hLq~- 113 (160)
T PF11841_consen 39 TAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQ---EVTLESLIRHLQV- 113 (160)
T ss_pred HHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhc---cCCHHHHHHHHHc-
Confidence 357778899873 2444444444 7889999999999999988885 444433 4456677776655
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 003320 379 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 420 (830)
Q Consensus 379 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L 420 (830)
.++.++...+..|-.|+=-. +..+|.++.+.|..+.+...
T Consensus 114 ~~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 78888887788887776332 22377789999988876543
No 28
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=71.53 E-value=22 Score=41.27 Aligned_cols=234 Identities=26% Similarity=0.398 Sum_probs=120.4
Q ss_pred CCHHHHHHHHH---hhChhhHHHHHHHHhcChHHHHHHHHHHHHHHhcCC----HHHHHHHHHHH---HHHHHcCChhhH
Q 003320 100 STLPLILKTVT---ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLEN----IDGLHMIFKII---KGIILLNSPQIF 169 (830)
Q Consensus 100 ~nL~eI~~~i~---~~s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle~----~~~Lh~L~~Iv---K~IilLNd~~Ii 169 (830)
..|....+++. .+..+++.--.++| |+.+|-||++||+. ||-.- ..-||++|-=+ |..|..--+.||
T Consensus 147 phLqlvye~~Lrf~~sp~~d~~vaK~yi--d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNif 223 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDPSVAKKYI--DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNIF 223 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCHHHHHHHh--hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchh
Confidence 35665555443 23344444334444 57999999999964 33322 34566665511 222222223332
Q ss_pred hH-hhcc------hhHhHHhhhcccCCCCCCccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcccccc-
Q 003320 170 EK-IFGD------ELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLD- 241 (830)
Q Consensus 170 E~-llsD------e~i~~VVG~LEYDPe~p~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqTYRLqYLKDVVLaRiLD- 241 (830)
=. +.+- .-+++++|+..--=++|-+..|.-||.+ =+||+.-+-=..--||- |.| +...|++
T Consensus 224 ~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r-----vLipLhk~k~l~~yh~Q--LaY----civQfveK 292 (457)
T KOG2085|consen 224 LRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR-----VLIPLHKPKSLSLYHKQ--LAY----CIVQFVEK 292 (457)
T ss_pred hhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH-----hhhccccCCCccccccc--cce----eeeeeecc
Confidence 22 2222 3367889999989999988899999953 23444322001111110 111 0111111
Q ss_pred hhhHHhhHHHHHhhHHHHHHHhh--------cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHH--HHhhhccChHhHHH
Q 003320 242 EATVANLNSIIHGNNAYVVSLLK--------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMVQQLR 311 (830)
Q Consensus 242 D~t~s~LnSlIffNqveIV~~Lq--------~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~--c~isK~LQ~~~R~~ 311 (830)
|+.+.-. -|-.+|+ ..-.||.||=.+++--+.+.-.|-.. -..+|+ |-=|-+.|...|.-
T Consensus 293 d~kl~~~---------VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVAEraL 362 (457)
T KOG2085|consen 293 DPKLTET---------VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVAERAL 362 (457)
T ss_pred CccccHH---------HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHHHHHH
Confidence 1111100 0222222 11247777777776444333333333 333332 34455678777865
Q ss_pred HH------HHHHhcC---cHHHHHHHHc-----CCCchhhhhhhHHHHHHHhcChHHHHH
Q 003320 312 LF------RDLMNEG---IFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 357 (830)
Q Consensus 312 lf------~~Lv~~G---L~~vi~~~L~-----~~d~~ir~~atDIL~~iiehdPslvR~ 357 (830)
+| .+|+.+. +++++-.+|- |=+..+......++-+++|.||.+.-.
T Consensus 363 ~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 363 YLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 55 4455443 5666666663 335667778888888999999887544
No 29
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.44 E-value=2e+02 Score=36.90 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHHcCCCchhhhhhhHHHHHHHh---cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCc
Q 003320 326 TDALQSQDKKLVLTGTDILILFLN---QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSG 402 (830)
Q Consensus 326 ~~~L~~~d~~ir~~atDIL~~iie---hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~ 402 (830)
-..++++---+|.-||+++..+-+ .||+.+++ .+....+.|.++.+..++.+.+-||+.++-...
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~---------ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~--- 535 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSE---------ALELTHNCLLNDNELPVRVEAALALQSFISNQE--- 535 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHH---------HHHHHHHHhccCCcCchhhHHHHHHHHHHhcch---
Confidence 344466667789999999987664 45666665 445667888889999999999999999985543
Q ss_pred hhhhHHHHHHHHhhHHHHHH
Q 003320 403 AQRDTIIEIFYEKHLGQLID 422 (830)
Q Consensus 403 ~e~d~fL~~FY~~~~~~L~~ 422 (830)
+-++.+.-+-...|..|+.
T Consensus 536 -~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 536 -QADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred -hhhhhHhhhhhHHHHHHHH
Confidence 2233444444444555444
No 30
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=68.77 E-value=2e+02 Score=32.21 Aligned_cols=219 Identities=15% Similarity=0.218 Sum_probs=120.6
Q ss_pred HHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC----CC
Q 003320 258 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS----QD 333 (830)
Q Consensus 258 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~----~d 333 (830)
.|+..|-++. ++-++.-+.+.. .....-++++|.+++.+.. .....++|+.+ +. =++++...+.. ..
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4455554332 777777776554 2334467778888776321 11123344444 11 12233333321 11
Q ss_pred ---------chhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hcCCCCCCch
Q 003320 334 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS-LLDSYTLSGA 403 (830)
Q Consensus 334 ---------~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~-LLDp~~m~~~ 403 (830)
+.+|...++.+++++.+.+..+|..++.+.+ ++..+.+.|-.| ++.+-.++.+.|+. +|..+...-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~--~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKK--LMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCc--hHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChh
Confidence 2899999999999999887777777777643 488888888774 55676788888873 4444444332
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCc----------------
Q 003320 404 QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY---------------- 467 (830)
Q Consensus 404 e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y---------------- 467 (830)
.| +.+|=+.++.+|.. |+....+ ... ..-+++.-+++-.+|. ...|.-
T Consensus 196 ~K---~~~fn~~~L~~l~~-Ly~~~~~-------~~~----~~~~~~vh~fL~~lcT-~p~~Gv~f~d~~~~~~~~~~~~ 259 (330)
T PF11707_consen 196 TK---CKLFNEWTLSQLAS-LYSRDGE-------DEK----SSVADLVHEFLLALCT-DPKHGVCFPDNGWYPRESDSGV 259 (330)
T ss_pred hh---hhhcCHHHHHHHHH-HhcccCC-------ccc----chHHHHHHHHHHHHhc-CCCcccccCCCCcCcCcccccc
Confidence 33 44555667777777 5543211 000 0112222222222221 111111
Q ss_pred ----chhhhHhhchHHHHHHHhhhccch--hHHHHHHHHHHHHh
Q 003320 468 ----RIKCNFLLNNVVDKVLLLTRRREK--YLVVAAVRFVRTIL 505 (830)
Q Consensus 468 ----riK~~il~~nll~kVl~Ll~~~~K--~L~LaAlRFlR~iI 505 (830)
.-+.+=+.|.++.++++.+++.+- +..| +++.+++|=
T Consensus 260 ~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~L-vl~Il~~~P 302 (330)
T PF11707_consen 260 PVTINNKSFKINNKLLLNLLKKLKPWEDDRQQEL-VLKILKACP 302 (330)
T ss_pred cccccCCCCCcccHHHHHHHHHCCCCccHHHHHH-HHHHHHHCh
Confidence 123445567788888888887654 3334 677777765
No 31
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=63.36 E-value=1.7e+02 Score=35.76 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=74.5
Q ss_pred cccchhhHHhhHHHHHhhHHHHH-HHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHH--HHHHHHhh-hccChHhHHHHH
Q 003320 238 RVLDEATVANLNSIIHGNNAYVV-SLLKDDSTFIQELFARLRSPTTLEESKKNLVHF--LHEFCGLS-KSLQMVQQLRLF 313 (830)
Q Consensus 238 RiLDD~t~s~LnSlIffNqveIV-~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~F--L~E~c~is-K~LQ~~~R~~lf 313 (830)
+.|-.+. ++=|++.+---+.++ ..|..|+.|+..+-.-+.+-- ..|.+.|.+ -+-+|++| +|..++ |+
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wl---s~k~emV~lE~Ar~v~~~~~~nv~~~----~~ 301 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWL---SDKFEMVFLEAARAVCALSEENVGSQ----FV 301 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHh---cCcchhhhHHHHHHHHHHHHhccCHH----HH
Confidence 4444444 455555554444444 456777776655433222110 011222211 23445554 343222 22
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHH----------------------HHhcCC---c-ch
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY----------------------VVRQEG---I-PL 367 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~----------------------i~~qe~---~-~L 367 (830)
..- ..+++..|+.+....|.+|.-||.-+..-.|..|... +++... . .|
T Consensus 302 ~~~-----vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 302 DQT-----VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred HHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 221 3566777888888888888888877776666554311 011100 0 22
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 368 LGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 368 l~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
++ +|-.|+.|-+.|.|.-+.+|+|.|-
T Consensus 377 v~-~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 377 VN-LIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HH-HHHHHHHhhccCceEEeHHHHHHHH
Confidence 32 3445667777888888888988883
No 32
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=1.1e+02 Score=38.73 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=137.9
Q ss_pred HHHHHHhhcCHHHHHHHHHH--------h---CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 003320 257 AYVVSLLKDDSTFIQELFAR--------L---RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 325 (830)
Q Consensus 257 veIV~~Lq~d~~FL~eLF~~--------l---~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi 325 (830)
.-|+.-.|.++.-|++|+.. | .++..+....-.+|++|.-||.=+ .-+|++|.+.||-.++
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~--------pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGS--------PLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCC--------hHHHHHHHHhhHHHHH
Confidence 44677777777777777741 1 122233445566777777776532 3479999999999999
Q ss_pred HHHHcCCCchhhhhhhHHHH-----------HHHh------------cChHHHHHHHHhc--------CCc----c---h
Q 003320 326 TDALQSQDKKLVLTGTDILI-----------LFLN------------QDPNLLRSYVVRQ--------EGI----P---L 367 (830)
Q Consensus 326 ~~~L~~~d~~ir~~atDIL~-----------~iie------------hdPslvR~~i~~q--------e~~----~---L 367 (830)
++.|..-++.-...-++.|. .+++ .|-++++..+--+ +|. + .
T Consensus 432 ~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 432 KRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNI 511 (1051)
T ss_pred HHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchh
Confidence 99998766532222222211 1111 1111111111100 010 1 1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCc
Q 003320 368 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTK 447 (830)
Q Consensus 368 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~ 447 (830)
..-++++.=.+ +|-.--.-+.++ .|+..--..+..+.++-|-+..++.|++...... ++.|++
T Consensus 512 ~~ri~~q~~~~--~~t~~~~~dkl~--~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA-----------~~~VR~-- 574 (1051)
T KOG0168|consen 512 DSRIIEQINED--TGTSRKQQDKLN--GSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSA-----------NPDVRY-- 574 (1051)
T ss_pred hhhhhhhhccC--cccchhhhhhcC--CchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccC-----------CchhhH--
Confidence 11222222112 221111111111 1111000012336788899999999998775431 222332
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHH
Q 003320 448 PEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 527 (830)
Q Consensus 448 ~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~ 527 (830)
.-|.-|..|.+|--- --|+--+-++++...++-++.+++-.+.+.||...--+...==|.|-.|+++.++|.-|-.
T Consensus 575 -kcL~Ailrlvy~s~s---eli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~ 650 (1051)
T KOG0168|consen 575 -KCLSAILRLVYFSNS---ELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQ 650 (1051)
T ss_pred -HHHHHHHHHHhhCCH---HHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHH
Confidence 356777777777552 2255556666777888888999999999999998877665545567789999999999887
Q ss_pred HHH
Q 003320 528 AFV 530 (830)
Q Consensus 528 ~f~ 530 (830)
+..
T Consensus 651 L~~ 653 (1051)
T KOG0168|consen 651 LSV 653 (1051)
T ss_pred Hhc
Confidence 776
No 33
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=62.26 E-value=13 Score=35.06 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=49.3
Q ss_pred eEEEecCCC-cceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHH
Q 003320 9 LFVIDEEDN-ETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICN 69 (830)
Q Consensus 9 L~V~sE~d~-~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~ 69 (830)
+-|.+...+ .++++..|.++-.|.+.-.+.-+|.+.+ .=..|+|++.+.+....+.+++
T Consensus 45 ~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~--~~~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 45 FRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDK--CVYGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred EEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCC--eEEEeecCCHHHHHHHHHHHHh
Confidence 344455555 8999999999999999999999999854 6699999999999988777764
No 34
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.29 E-value=32 Score=40.77 Aligned_cols=275 Identities=17% Similarity=0.215 Sum_probs=154.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH-----hHHHHHHHHHhcCcHH-HHHH
Q 003320 254 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIFD-IVTD 327 (830)
Q Consensus 254 fNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~-----~R~~lf~~Lv~~GL~~-vi~~ 327 (830)
-....|+++|.+ ..++..|.+.|. |..+.+....+..||+++..++.+-+.. .-..|-+.|++.-... .+..
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 356789999987 589999999997 7778888899999999999999865332 2256888898776554 6678
Q ss_pred HHcCCCchhhhhhhHHHHHHHhcChHHHHHHH----HhcC----Cc----chHH-------HHHHHHhccC-------C-
Q 003320 328 ALQSQDKKLVLTGTDILILFLNQDPNLLRSYV----VRQE----GI----PLLG-------LLVKGMITDF-------G- 380 (830)
Q Consensus 328 ~L~~~d~~ir~~atDIL~~iiehdPslvR~~i----~~qe----~~----~Ll~-------~Li~~ll~d~-------d- 380 (830)
+|.......-..|+.|++.+|....+-.-... ...+ +. .++. -+.++|.... .
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~ 206 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTF 206 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCC
Confidence 88644477778889999988865533211100 0000 11 1111 1233333220 1
Q ss_pred ------hhH-HHHHHHHHHHhcCCCCCCc----------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc---c-cc--
Q 003320 381 ------EDM-HCQFLEILRSLLDSYTLSG----------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIA---Q-SA-- 437 (830)
Q Consensus 381 ------~gl-k~Ql~eaLk~LLDp~~m~~----------~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~---~-~~-- 437 (830)
.|. +-.++|.+-.||...+|.. .+||.....--+. +..+...+... ..+... . ..
T Consensus 207 G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (475)
T PF04499_consen 207 GVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ-LQDALNDLEID-DEDIDDNSMDDESDS 284 (475)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcHHHHHHHHHH-HHhhhhcccCC-ccccccccccccccC
Confidence 132 5678999999999999852 1455444333222 23333333210 000000 0 00
Q ss_pred -CCCC--ccccCcHHH--------------H--HHHHHHHHHHHhhCC---cchhhhHhhchHHHHHHHhhh--ccchhH
Q 003320 438 -SSGG--RVESTKPEI--------------L--SNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTR--RREKYL 493 (830)
Q Consensus 438 -~~~~--~~~~~~~~l--------------l--~~l~ELL~Fcv~~H~---yriK~~il~~nll~kVl~Ll~--~~~K~L 493 (830)
.... .+....... . ...++.--=-.+.-+ -.+|.-++..+++..++.|.- +-+-||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFL 364 (475)
T PF04499_consen 285 SEDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFL 364 (475)
T ss_pred ccccccccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHH
Confidence 0000 000000000 0 000000000001111 136777888889999998854 557899
Q ss_pred HHHHHHHHHHHhcC-----chhHHHHHH-HhhCCHHHHHHHHHHh
Q 003320 494 VVAAVRFVRTILSR-----HDEHLINHF-VKNNLLKPIVDAFVAN 532 (830)
Q Consensus 494 ~LaAlRFlR~iI~l-----~Defy~ryi-Ik~nLf~PIl~~f~~n 532 (830)
....-.++..|+.- ...+...++ .+.+|..=|++....+
T Consensus 365 H~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 365 HNVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 99999999999932 223333333 4677777788877765
No 35
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.26 E-value=2.6e+02 Score=32.56 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=115.1
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 393 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 393 (830)
+.|+..|=++++-.+++..|..++--+|--+..|. .|-- -|.. +-|.+..|+..|+++| .+.++-+|.|..-||+.
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd~~-~Rk~-Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VDRR-ARKI-LAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-hhHH-HHHH-HHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 45788999999999999999888766665443332 2222 2443 3455566888888876 55788899999999998
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhh--
Q 003320 394 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC-- 471 (830)
Q Consensus 394 LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~-- 471 (830)
|---... .+..--...++-|++-|.+.. -+-++. =-||+++-+.+--+
T Consensus 278 lasdt~Y-------q~eiv~ag~lP~lv~Llqs~~------------------~plila-----sVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 278 LASDTEY-------QREIVEAGSLPLLVELLQSPM------------------GPLILA-----SVACIRNISIHPLNEV 327 (550)
T ss_pred hcccchh-------hhHHHhcCCchHHHHHHhCcc------------------hhHHHH-----HHHHHhhcccccCccc
Confidence 8422211 111122234555665553210 001111 13788776655322
Q ss_pred hHhhchHHHHHHHhhhccchh-HHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHH
Q 003320 472 NFLLNNVVDKVLLLTRRREKY-LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 472 ~il~~nll~kVl~Ll~~~~K~-L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~ 530 (830)
.|.....++-.++|+++++.- .++.|+-.+|..-+-- +.-.+-|+..|-..-...+++
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHh
Confidence 344555677788999999875 8999999999976533 334566777777776666654
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=56.23 E-value=4e+02 Score=31.45 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=111.7
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHh
Q 003320 284 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR 361 (830)
Q Consensus 284 ~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~ 361 (830)
++-.+-++.++-+++.- .++|..+|..-. +...+...-..|..+|..+...+.-||..++.+++...-..
T Consensus 68 ~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~--- 139 (429)
T cd00256 68 DDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGS--- 139 (429)
T ss_pred HHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchh---
Confidence 34444555556665554 245555554321 22333333336778888999999999999998877421110
Q ss_pred cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCC
Q 003320 362 QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSG 440 (830)
Q Consensus 362 qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~-~~~~L~~pL~~~~p~~~~~~~~~~~ 440 (830)
....+++.|++++-...+.+.+...+..|..||-.. .|=..|.+. ++..|+.-|-...
T Consensus 140 -~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~--------~~R~~f~~~~~v~~L~~~L~~~~------------ 198 (429)
T cd00256 140 -DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD--------EYRFAFVLADGVPTLVKLLSNAT------------ 198 (429)
T ss_pred -HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc--------hHHHHHHHccCHHHHHHHHhhcc------------
Confidence 011244566666654434555544556676766332 233345533 4455544332110
Q ss_pred CccccCcHHHHHH---HHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhh--ccchhHHHHHHHHHHHHhcCc-----hh
Q 003320 441 GRVESTKPEILSN---ICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRH-----DE 510 (830)
Q Consensus 441 ~~~~~~~~~ll~~---l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~--~~~K~L~LaAlRFlR~iI~l~-----De 510 (830)
...+++.+ .+=+|||.-. .-...-..+++..++.+++ .|+|..+++ +-.||+++... -.
T Consensus 199 -----~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~-l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 199 -----LGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRIV-LAIFRNLISKRVDREVKK 267 (429)
T ss_pred -----ccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhcccccchhh
Confidence 12233322 2334444433 2223334578888887765 689999975 77899999865 33
Q ss_pred HHHHHHHhhCCHHHHHHHH
Q 003320 511 HLINHFVKNNLLKPIVDAF 529 (830)
Q Consensus 511 fy~ryiIk~nLf~PIl~~f 529 (830)
.+.--|+..++.. ++..+
T Consensus 268 ~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 268 TAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred hHHHHHHHcChHH-HHHHH
Confidence 4555666666644 44433
No 37
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=50.91 E-value=32 Score=33.13 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHH
Q 003320 16 DNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICN 69 (830)
Q Consensus 16 d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~ 69 (830)
|+.+++++.|.++=.|.+.--+...|.+.+ +=..|+|+..+.+...=+.|.+
T Consensus 54 ~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~--~v~GLnF~Se~eA~~F~~~v~~ 105 (111)
T cd01207 54 DHQVVINCAIVKGLKYNQATPTFHQWRDAR--QVYGLNFGSKEDATMFASAMLS 105 (111)
T ss_pred CCcEEEEEEecCCceeeecCCcceeeecCC--eEEeeccCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999986 7899999999999875555544
No 38
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=49.83 E-value=3.2e+02 Score=28.47 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhCCcc-hhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCc
Q 003320 449 EILSNICELLCFCVLHHPYR-IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 508 (830)
Q Consensus 449 ~ll~~l~ELL~Fcv~~H~yr-iK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 508 (830)
.++.+++.-|+-.|+.-+|+ ++.= +-..++..|..++..++.-.+++|+=+|-.+++..
T Consensus 117 ~~l~q~lK~la~Lv~~tPY~rL~~~-ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATPYHRLPPG-LLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHHccCChhhcCHh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 45667777777777777774 3322 22334455666777788889999998888887754
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=49.59 E-value=22 Score=25.85 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhc
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 350 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iieh 350 (830)
|++.+-..+++++..+|.+|+.-|..|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 577888899999999999999998888765
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.44 E-value=70 Score=29.79 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=45.1
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 393 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 393 (830)
|++.+=..+.++|..+|-.|++-|..|..+-...+=.+..+ ++..|++ ++.|.++.++. -++.|-.
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~-----IF~~L~k-l~~D~d~~Vr~-~a~~Ld~ 93 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE-----IFDALCK-LSADPDENVRS-AAELLDR 93 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHcCCchhHHH-HHHHHHH
Confidence 34555577789999999999999998887665543333323 6777776 45788888874 3344433
No 41
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.27 E-value=6.9e+02 Score=32.10 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=70.6
Q ss_pred hhHHHHHhhHHHHH-HHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh--h-hccChHh----HHHHHHHHHh
Q 003320 247 NLNSIIHGNNAYVV-SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGL--S-KSLQMVQ----QLRLFRDLMN 318 (830)
Q Consensus 247 ~LnSlIffNqveIV-~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~i--s-K~LQ~~~----R~~lf~~Lv~ 318 (830)
.+.+-|+.-.+.-| ..|-+|..+|..||+.+..+.. ...-+..|+.-+-.+ . |..|.-. +..++..|+.
T Consensus 79 ~i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~p---ln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~ 155 (838)
T KOG2073|consen 79 NISCEILTSDVWPISEALVEDESLLSLLYSILEHEPP---LNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLK 155 (838)
T ss_pred cHHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCc---ccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHH
Confidence 34455555555544 4678889999999999986521 111222222111111 1 1112211 4445545544
Q ss_pred c-CcHHHHHHHHcCC--CchhhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 319 E-GIFDIVTDALQSQ--DKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 319 ~-GL~~vi~~~L~~~--d~~ir~~atDIL~~iiehdP-slvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
| |+..++.+.|+.- |.. ..| ..|-+++..|+ ++..|++.+....++++++-..+.|+.+
T Consensus 156 hi~~stlMD~Llkli~~de~--------------~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~i 218 (838)
T KOG2073|consen 156 HIDISTLMDFLLKLISTDEP--------------ESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAI 218 (838)
T ss_pred HcCccHHHHHHHHhccccCC--------------CCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 3 5555555555421 211 112 22334444433 7888888888888898888777877777
Q ss_pred cC
Q 003320 395 LD 396 (830)
Q Consensus 395 LD 396 (830)
.-
T Consensus 219 v~ 220 (838)
T KOG2073|consen 219 VR 220 (838)
T ss_pred Hh
Confidence 63
No 42
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.07 E-value=1.1e+02 Score=36.45 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---Hc-CC--CchhhhhhhHHHHHHHhcChHHHHHHH
Q 003320 287 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQ--DKKLVLTGTDILILFLNQDPNLLRSYV 359 (830)
Q Consensus 287 rrdlV~FL~E~c~isK~LQ-~~~R~~lf~~Lv~~GL~~vi~~~---L~-~~--d~~ir~~atDIL~~iiehdPslvR~~i 359 (830)
..+.+.+|++.+.-++.=+ ...+..+.++|-+.|.-.++... +. .. ...+|.+|+--|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777666654322 23345677899999976665443 33 22 245899999998888999999999876
Q ss_pred Hh
Q 003320 360 VR 361 (830)
Q Consensus 360 ~~ 361 (830)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 65
No 43
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=47.55 E-value=90 Score=38.27 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHH
Q 003320 447 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 526 (830)
Q Consensus 447 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl 526 (830)
+..+++-||-| |-+-+ -.|.+|+.+|.+.++..++..+..-++-.+++++|..+-..|+-.....- .+++.-.+
T Consensus 436 ~~~~lgai~Nl----Vmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~-~ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNL----VMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL-AKIPANLI 509 (678)
T ss_pred HHHHHHHHHHH----Hhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH-HHhhHHHH
Confidence 33455555544 33332 24789999999999999999999889999999999998777764433322 24444445
Q ss_pred HHHHHhCCCCcchHHHHHH-HHHHHHh--hChHHHHHHHHHhhHhhcccc
Q 003320 527 DAFVANGNRYNLLNSAVLE-LFEYIRK--ENLKSLVKYIVDSFWNQLVNF 573 (830)
Q Consensus 527 ~~f~~ng~R~NLlnSA~LE-lfefIr~--eNik~Li~hlve~y~~~l~~i 573 (830)
..|..+.+- +|+| .|.-.|. -|-..-+.||+++|.+.+.++
T Consensus 510 ~~l~nd~d~------~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPDW------AVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCCH------HHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHH
Confidence 555444332 4444 3444443 466788999999999988654
No 44
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.28 E-value=1.4e+02 Score=34.54 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHH---HhcCCHHHHHHHHH----HHHHHHHcCChhhHhHhhcchhHhHHhhhccc------CCCCCC
Q 003320 127 DQDFFRKLMDLFRIC---EDLENIDGLHMIFK----IIKGIILLNSPQIFEKIFGDELMMDIIGSLEY------DPDVPH 193 (830)
Q Consensus 127 ~~~YI~KLl~LF~~c---Edle~~~~Lh~L~~----IvK~IilLNd~~IiE~llsDe~i~~VVG~LEY------DPe~p~ 193 (830)
+..++.+|+++|+.. |-.--..-||.+|. .-..|...=.+.+++.+...+...||--+||. .=..|-
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Q ss_pred ccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcccccchhhHHhhHHHHHhhHHHHHHHhhcCHH----H
Q 003320 194 VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDST----F 269 (830)
Q Consensus 194 ~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqTYRLqYLKDVVLaRiLDD~t~s~LnSlIffNqveIV~~Lq~d~~----F 269 (830)
+..|..||.+--- |-...+-=.+|.=|..+ .+++++..|+. +
T Consensus 211 k~eh~~fl~~vll---------PLh~~~~~~~y~~~L~~-------------------------~~~~f~~kdp~l~~~~ 256 (409)
T PF01603_consen 211 KEEHKQFLRKVLL---------PLHKSPHLSSYHQQLSY-------------------------CVVQFLEKDPSLAEPV 256 (409)
T ss_dssp -HHHHHHHHHTTG---------GGGGSTGGGGTHHHHHH-------------------------HHHHHHHH-GGGHHHH
T ss_pred cHHHHHHHHHHHH---------HHhcCCcHHHHHHHHHH-------------------------HHHHHHHhCchhHHHH
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhh-----HHH
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGT-----DIL 344 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~at-----DIL 344 (830)
++-|+.-.--.+...+ |.||+|+-.+...+++..=...-..| |..|..++.++..+|--.|. +-+
T Consensus 257 i~~llk~WP~t~s~Ke-----v~FL~el~~il~~~~~~~f~~i~~~l-----f~~la~ci~S~h~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKE-----VLFLNELEEILEVLPPEEFQKIMVPL-----FKRLAKCISSPHFQVAERALYFWNNEYF 326 (409)
T ss_dssp HHHHHHHS-SS-HHHH-----HHHHHHHHHHHTT--HHHHHHHHHHH-----HHHHHHHHTSSSHHHHHHHHGGGGSHHH
T ss_pred HHHHHHhCCCCCchhH-----HHHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHCCHHH
Q ss_pred HHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 003320 345 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 396 (830)
Q Consensus 345 ~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 396 (830)
+.++..+...+--+++. .|.+..-..=+..++.-...++++|+|
T Consensus 327 ~~li~~~~~~i~p~i~~--------~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFP--------ALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHCTHHHHHHHHHH--------HHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHH
No 45
>PF05536 Neurochondrin: Neurochondrin
Probab=46.41 E-value=6.2e+02 Score=30.71 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-------CCchhhhh
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-------QDKKLVLT 339 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~-------~d~~ir~~ 339 (830)
+.-|.+....++... ++.|.=++.++.-+|. +.......|...|.++ | ++.+.-.|+. +....+..
T Consensus 4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~L 76 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSL 76 (543)
T ss_pred hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHH
Confidence 345777888888665 6888999988888777 4333334444556433 4 5777777765 23456788
Q ss_pred hhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHH
Q 003320 340 GTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQ 419 (830)
Q Consensus 340 atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~ 419 (830)
|+-||.++.. +|.+.++.-+- .-+-.|++.+....+.++..-..+.|..+.-. -.|+ .. +.....+..
T Consensus 77 avsvL~~f~~-~~~~a~~~~~~----~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~--~a---Ll~~g~v~~ 144 (543)
T PF05536_consen 77 AVSVLAAFCR-DPELASSPQMV----SRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGA--KA---LLESGAVPA 144 (543)
T ss_pred HHHHHHHHcC-ChhhhcCHHHH----HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhH--HH---HHhcCCHHH
Confidence 9999988776 88765442111 13445667676666656666667777766511 1121 11 222344566
Q ss_pred HHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHH
Q 003320 420 LIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVR 499 (830)
Q Consensus 420 L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlR 499 (830)
|++-+... ...-+...+++-.++.-...+... ++.-.-..++.++.......++-.+..+++
T Consensus 145 L~ei~~~~-----------------~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~ 206 (543)
T PF05536_consen 145 LCEIIPNQ-----------------SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLE 206 (543)
T ss_pred HHHHHHhC-----------------cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 65544321 001122333333333333333322 333344456677777777777777777777
Q ss_pred HHHHHhcCch
Q 003320 500 FVRTILSRHD 509 (830)
Q Consensus 500 FlR~iI~l~D 509 (830)
|+-.++...+
T Consensus 207 ~L~~~L~~~~ 216 (543)
T PF05536_consen 207 FLSAFLPRSP 216 (543)
T ss_pred HHHHhcCcCC
Confidence 7777776663
No 46
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=44.92 E-value=5.4e+02 Score=29.66 Aligned_cols=64 Identities=19% Similarity=0.383 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHH
Q 003320 292 HFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVV 360 (830)
Q Consensus 292 ~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~ 360 (830)
.+|.-+..+-++... .-+...+- -|++++-.+|..+|..++.++.++|..+++..|..+-.|+-
T Consensus 342 ~yL~ALs~ll~~vP~---~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 342 NYLTALSHLLKNVPK---SVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHHHHHHHhhCCH---HHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345566666676652 22222222 28999999999999999999999999999999999888763
No 47
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=44.19 E-value=54 Score=37.24 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=66.4
Q ss_pred hhHhhchHHHHHHHhhh-ccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHH-HHHhCCC--CcchHHHHHHH
Q 003320 471 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 546 (830)
Q Consensus 471 ~~il~~nll~kVl~Ll~-~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~-f~~ng~R--~NLlnSA~LEl 546 (830)
-|+++++|+.++.++-. ....-.+..++||+.++|+.-++= .+...++..||+.+ +..-|.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 48999999999999954 455678899999999999887664 56677999999999 7655543 56677777777
Q ss_pred HHHHHh--hChHHHHHHHHH
Q 003320 547 FEYIRK--ENLKSLVKYIVD 564 (830)
Q Consensus 547 fefIr~--eNik~Li~hlve 564 (830)
+..|.. ..-..|+.+..+
T Consensus 80 L~~lc~~i~~~P~ll~~ff~ 99 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFE 99 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 776643 222344444443
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.99 E-value=2.5e+02 Score=32.11 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=66.1
Q ss_pred HhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 003320 246 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 325 (830)
Q Consensus 246 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi 325 (830)
.+|.+ +.-||..+...+-+. .||+.|+.++.. +.+...|..+ |.-+|++-+|-++-.. .|+ .-.| +.++
T Consensus 146 ~Vigt-~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~-~~~~~~r~ka---L~AissLIRn~~~g~~-~fl---~~~G-~~~L 214 (342)
T KOG2160|consen 146 RVIGT-AVQNNPKSQEQVIEL-GALSKLLKILSS-DDPNTVRTKA---LFAISSLIRNNKPGQD-EFL---KLNG-YQVL 214 (342)
T ss_pred HHHHH-HHhcCHHHHHHHHHc-ccHHHHHHHHcc-CCCchHHHHH---HHHHHHHHhcCcHHHH-HHH---hcCC-HHHH
Confidence 34444 456777777776665 499999999984 3344444433 4567777787766433 232 3356 9999
Q ss_pred HHHHcC--CCchhhhhhhHHHHHHHhcChH
Q 003320 326 TDALQS--QDKKLVLTGTDILILFLNQDPN 353 (830)
Q Consensus 326 ~~~L~~--~d~~ir~~atDIL~~iiehdPs 353 (830)
..+|+. .+...+..++-.+..++.-+++
T Consensus 215 ~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 215 RDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999998 5666777888888888877766
No 49
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.44 E-value=2.4e+02 Score=28.40 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=79.8
Q ss_pred HHHHHHHcCCCchhhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 003320 323 DIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 401 (830)
Q Consensus 323 ~vi~~~L~~~d~~ir~~atDIL~~iiehd-PslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 401 (830)
.-|.-.|++.+..-|-.|+-++..+++++ +..+.++ ....+..|+..+=....+.++.-...+|..|++--.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~-- 100 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR-- 100 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34667788999999999999999999997 6665332 234666777666555556666666666666664211
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhH
Q 003320 402 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 473 (830)
Q Consensus 402 ~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i 473 (830)
.+.++-.-+--..++.++.+++..... .......++.|.-|+.+|+--+|.|-
T Consensus 101 --~~p~l~Rei~tp~l~~~i~~ll~l~~~-----------------~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 101 --GKPTLTREIATPNLPKFIQSLLQLLQD-----------------SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred --CCCchHHHHhhccHHHHHHHHHHHHhc-----------------cccHHHHHHHHHHHHHHCCccccchH
Confidence 111222222233466667776653210 23445778999999999998777653
No 50
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=42.54 E-value=38 Score=33.08 Aligned_cols=64 Identities=8% Similarity=0.120 Sum_probs=50.1
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccC--ceeEeccCCcc------ccccccccCccchhHHHHHHH
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWRDPEYS------TELALSFQEPTGCSYIWDNIC 68 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqe--TLIvWte~~~g------~DlALSFQe~~GC~~IWe~I~ 68 (830)
.-.+||+|.+..+.++|.+.|.++-.|+.... .-.+|+-.+.+ .-+++-|-.++.+...++.|.
T Consensus 57 ~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 57 GKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred CeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHH
Confidence 45789999998899999999999999987654 46678532211 348999999999998887764
No 51
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=42.26 E-value=72 Score=32.23 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcc
Q 003320 403 AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 468 (830)
Q Consensus 403 ~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr 468 (830)
+++|+|++.|.+-|...|=.|-. .....+-..++++||.||++|.+-
T Consensus 121 ~~~e~Fi~l~~r~~y~llE~~~~-------------------~K~~~ik~~if~il~~~vk~h~h~ 167 (171)
T PF12922_consen 121 PEEEEFISLFTRPCYKLLENPEI-------------------VKNKSIKDAIFRILGTAVKKHNHA 167 (171)
T ss_pred CchHHHHHHHHHHHHHHHcChHh-------------------hccHHHHHHHHHHHHHHHHHcccc
Confidence 48999999888877644311111 112356679999999999999874
No 52
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.10 E-value=2.8e+02 Score=27.68 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcC
Q 003320 272 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 351 (830)
Q Consensus 272 eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehd 351 (830)
++..+..++....+.+ ..+-++|.+.++=....|.. +.+|..-|++.++.+...|..+|-+|+...
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~a----------~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKDC----------LKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 3445555554433332 44567787776544444543 456777788999999999999999999998
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 352 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 352 PslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
...++..+.+ ..+++.|++.+-...++.++.-+.+.++.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888877765 4578887776655577888887777777663
No 53
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=41.61 E-value=8.3e+02 Score=30.82 Aligned_cols=227 Identities=14% Similarity=0.237 Sum_probs=104.8
Q ss_pred HHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH--hcChH-HHHHH-------HHhcCCcchHHHHHHHHhc-cCChhH
Q 003320 315 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL--NQDPN-LLRSY-------VVRQEGIPLLGLLVKGMIT-DFGEDM 383 (830)
Q Consensus 315 ~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii--ehdPs-lvR~~-------i~~qe~~~Ll~~Li~~ll~-d~d~gl 383 (830)
.+++.|++..|-.+|.+.+..+...++-.|--+- ..+-+ |...- ++..+...+.+.-++.|.+ .+|+++
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 4578899999999998887777666665553221 11111 11100 1111233455555666665 667777
Q ss_pred HHHHHH-----HHHHhcCCCCCC-----------chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccC-C--CCccc
Q 003320 384 HCQFLE-----ILRSLLDSYTLS-----------GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSAS-S--GGRVE 444 (830)
Q Consensus 384 k~Ql~e-----aLk~LLDp~~m~-----------~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~-~--~~~~~ 444 (830)
+.++.. .|-.||..++.. ..++ .--.+=|..|++.|++-++....+.. ..+.. . ....+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEV-QLELIALLINLALN 442 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcC
Confidence 776664 344444332210 0011 11123456788888888776422111 00000 0 00000
Q ss_pred cCcHHH------HHHHHHH--------HHHHH---hhCCcchhhhHhhchHHHHHHHhhh-ccchhHHHHHHHHHHHHhc
Q 003320 445 STKPEI------LSNICEL--------LCFCV---LHHPYRIKCNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 445 ~~~~~l------l~~l~EL--------L~Fcv---~~H~yriK~~il~~nll~kVl~Ll~-~~~K~L~LaAlRFlR~iI~ 506 (830)
...+++ +..+++. |-=++ -+|....|.-|. +.+..++.++. +..--+.+-++=.+.++-
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~- 519 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT- 519 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc-
Confidence 000110 1111111 11122 234443443332 23333333332 223344444455554433
Q ss_pred CchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 507 RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 507 l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
..|.-|.+.+.+++++.-+.+.+......+. .+||..=++
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dD----l~LE~Vi~~ 559 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDD----LLLEVVILL 559 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChH----HHHHHHHHH
Confidence 2455688888888888888888864445444 445444444
No 54
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=41.57 E-value=3.5e+02 Score=26.44 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+.++..+..++....+.+ ..+-++|.+.+.-....+.. ..+|..-|++.++.+...|..+|=+++.
T Consensus 6 ~~~li~kATs~~~~~~Dw----~~~l~icD~i~~~~~~~kea----------~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW----SLILEICDLINSSPDGAKEA----------ARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H----HHHHHHHHHHHTSTTHHHHH----------HHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH----HHHHHHHHHHHcCCccHHHH----------HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455666666655544422 22336787766554444543 4677888899999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChh---HHHHHHHHHHHh
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSL 394 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~g---lk~Ql~eaLk~L 394 (830)
+....++..+.+ ..+++.|.+++-...... ++..+.+.|..+
T Consensus 72 Ncg~~f~~ev~~---~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 72 NCGPRFHREVAS---KEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhH---HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 987777776655 348888887766544443 788887777665
No 55
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.50 E-value=1.3e+02 Score=37.53 Aligned_cols=249 Identities=19% Similarity=0.220 Sum_probs=140.9
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT- 399 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~- 399 (830)
++.-|..++++.++-+|.+++.....+-+.+|.+++. ..++..|-++ +.|.++++-+....+|..+.+..+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-------~gl~~~L~~l-l~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-------SGLVDALKDL-LSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc-------cchhHHHHHH-hcCCCchHHHHHHHHHHHHHHhCCC
Confidence 3444556677889999999999988888888887654 5677776654 458999987777778877776553
Q ss_pred CCch-hhhHHHHHHHH---hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcc-----hh
Q 003320 400 LSGA-QRDTIIEIFYE---KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR-----IK 470 (830)
Q Consensus 400 m~~~-e~d~fL~~FY~---~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr-----iK 470 (830)
+... .-..+++.+-. .|-.|---++++.... . . +. +..=...||+.++=..+|-.-+ .|
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~-y---~--p~------d~~ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTEWGQIFILDCLAE-Y---V--PK------DSREAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh-c---C--CC------CchhHHHHHHHhhhhhccCCcceEeehHH
Confidence 2111 11112222221 2323322222221000 0 0 00 0001123455544433333221 12
Q ss_pred hhH--------hhchHHHHHH-Hh--hhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCH---HHH------HHHHH
Q 003320 471 CNF--------LLNNVVDKVL-LL--TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFV 530 (830)
Q Consensus 471 ~~i--------l~~nll~kVl-~L--l~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf---~PI------l~~f~ 530 (830)
-+. ..+.+..|+. .| +-+...-++..|||=++-++...++ +.+.=++.=.+ +|| ++++.
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~ 340 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILI 340 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHH
Confidence 111 2234445543 12 4466777788999999999999998 88877777544 455 35555
Q ss_pred HhCCCCcchHHHHHHHHHHHHh-------hChHHHH---------HHHHHhhHhhcc-cccch-----hhHHHHHHhhhh
Q 003320 531 ANGNRYNLLNSAVLELFEYIRK-------ENLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQ 588 (830)
Q Consensus 531 ~ng~R~NLlnSA~LElfefIr~-------eNik~Li---------~hlve~y~~~l~-~i~yv-----~tf~~L~~ryeq 588 (830)
+-.+.-|+-. ..-||-+|--- +-|+.+= +.+|..+=+.++ +++|| .+|+.+-.+|.|
T Consensus 341 ~la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 341 ELANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HHhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 5556667766 66677776522 2222211 335555555555 56676 378888888888
Q ss_pred hcc
Q 003320 589 CLE 591 (830)
Q Consensus 589 ~~~ 591 (830)
.-+
T Consensus 420 ~~~ 422 (734)
T KOG1061|consen 420 KYE 422 (734)
T ss_pred chh
Confidence 743
No 56
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=39.91 E-value=80 Score=37.57 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=91.9
Q ss_pred hHHHHHHHhhcC-------HHHHHHHHHHhCCCCCcHHhHHHHHHHH---HHHHHhhhccChHhHHHHHHHHHhcCcHHH
Q 003320 255 NNAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 324 (830)
Q Consensus 255 NqveIV~~Lq~d-------~~FL~eLF~~l~~~~~~~e~rrdlV~FL---~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~v 324 (830)
-|..|+++|..+ +..++=+|.-+.++++...-|.-++.|+ +..+.. . .+......+..+..|+.+.
T Consensus 299 lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~---~-~~~~l~~l~~~i~~~g~p~ 374 (501)
T PF13001_consen 299 LQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH---I-SPQILKLLRPVILSQGWPL 374 (501)
T ss_pred HHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh---c-CHHHHHHHHHHHHhcCccc
Confidence 366788877654 2345555555556655556677888998 554433 2 2345667778888888888
Q ss_pred HHH----HHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 325 VTD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 325 i~~----~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
+.. .-...+...|..+-+.|-.+.-.+|.++.. +..++..|-+.| .+..++++..+-|||-.|+
T Consensus 375 ~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 375 IQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 731 223456778999999999999999998743 466888888888 7778899999999997775
No 57
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=39.58 E-value=1.2e+03 Score=32.22 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=46.0
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 341 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 341 tDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
.-++..++++|+. .|..+.+.....++.+|...+-+...+.||..++.+|..|+
T Consensus 585 L~Li~~V~~~s~~-ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 585 LRLISSVVRNSEQ-ARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHhcCHH-HHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3555678888866 68888887777789999999999999999999999999997
No 58
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=39.06 E-value=78 Score=35.01 Aligned_cols=50 Identities=12% Similarity=0.442 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCChhhHhHhhcchhHhHHhhhcccCCC
Q 003320 130 FFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPD 190 (830)
Q Consensus 130 YI~KLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VVG~LEYDPe 190 (830)
...+|-.|.+.|.+-..-+....+-.+||.++.. ++-. -.++.|||+||+
T Consensus 192 lsEnLekLl~ea~erS~~~~~~~~~~lvrklL~I---------isRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 192 LSENLEKLLQEAHERSESEEVAFVTQLVRKLLII---------ISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------HSS---------------
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH---------hcch--hhhhhhhccChH
Confidence 3467777888888877788899999999998841 1111 156789999998
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=9.6e+02 Score=30.66 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 003320 322 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 400 (830)
Q Consensus 322 ~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 400 (830)
.++|...|.+.|..+|-.|.+.|...|.+||+.|.++- .+. ++. +.|.|..++.-.+|.+-.|.+..|.
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tI----leC-L~DpD~SIkrralELs~~lvn~~Nv 383 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STI----LEC-LKDPDVSIKRRALELSYALVNESNV 383 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHH----HHH-hcCCcHHHHHHHHHHHHHHhccccH
Confidence 36777888999999999999999999999999876642 222 222 4788888988888988888887774
No 60
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=38.12 E-value=5e+02 Score=30.26 Aligned_cols=219 Identities=20% Similarity=0.237 Sum_probs=108.7
Q ss_pred cCCCCCC---ccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcc-ee----ee----hhcc-cccchhhHHhhHHHHH
Q 003320 187 YDPDVPH---VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVG-YL----KD----VVLA-RVLDEATVANLNSIIH 253 (830)
Q Consensus 187 YDPe~p~---~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqTYRLq-YL----KD----VVLa-RiLDD~t~s~LnSlIf 253 (830)
-|+..|- .++.-+||.+.+.|.++= ....++.-|-.|+|.- =+ +| +||| -...|---...|--++
T Consensus 125 ad~~i~~~~~s~~qfe~ls~lv~~~q~e--~r~sl~~~ilst~~al~~lD~~iid~ll~svL~~k~v~~~~td~~~~~~~ 202 (411)
T KOG4035|consen 125 ADGFIPLYVISANQFEWLSQLVAYYQME--QRDSLRELILSTFRALCSLDEPIIDILLDSVLPIKLVEDMQTDKSNGQQI 202 (411)
T ss_pred cCCcchhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcccchHHHHHHHhhccchhhhHHHhhhhccHHHH
Confidence 5666663 467888888887776652 2357888888999822 11 22 2222 0111111001111111
Q ss_pred hhHHHHHHHhhcC-------------HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH----hHHHHHHHH
Q 003320 254 GNNAYVVSLLKDD-------------STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV----QQLRLFRDL 316 (830)
Q Consensus 254 fNqveIV~~Lq~d-------------~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~----~R~~lf~~L 316 (830)
.--..++.+++.+ ..|.+.||.+..+.. ....+-+|.++++.+..+ ....+++-+
T Consensus 203 ~~~~~~l~~l~s~~e~~p~~~md~lgs~~~~~l~~i~e~~~--------~~~L~el~~~f~~~~n~q~~~a~~nvi~~~l 274 (411)
T KOG4035|consen 203 KYLKILLLMLFSDDEAFPLEHMDSLGSEFARFLFNIAEDFH--------KEDLLELCTNFSLATNQQQGSAPLNVIQKIL 274 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcCCHHHHHHHHHcCccc--------HHHHHHHHHHHHHHHhhhcccccHHHHHHHh
Confidence 1122233333332 246667777665422 233456666777654222 122345555
Q ss_pred HhcCcHHHHHHH----Hc-CCCchhhhhhhHHHHHHHh--cChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHH
Q 003320 317 MNEGIFDIVTDA----LQ-SQDKKLVLTGTDILILFLN--QDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFL 388 (830)
Q Consensus 317 v~~GL~~vi~~~----L~-~~d~~ir~~atDIL~~iie--hdPslvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~ 388 (830)
.++---.+.... |. .+|+ +|..-..||-.+++ -+|+. -...+..+=..|++++|+.+.. +.+.-+..-..
T Consensus 275 ~n~~~~kiFtE~Lll~LNR~~DP-lril~hkvl~lild~fg~pat-~~mFYtNDlkVLIDIliRel~ni~~gd~lr~~~l 352 (411)
T KOG4035|consen 275 ENPYSCKIFTEKLLLKLNREDDP-LRILKHKVLYLILDPFGEPAT-AKMFYTNDLKVLIDILIRELINIDEGDKLRAIYL 352 (411)
T ss_pred cCCchHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHhhcCCcch-HhHhhhccHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 444333333222 23 3455 88888887766663 34443 2223333323577788877765 33344555566
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHH
Q 003320 389 EILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVIT 425 (830)
Q Consensus 389 eaLk~LLDp~~m~~~e~d~fL~~FY~~-~~~~L~~pL~ 425 (830)
..++.|+-... ..+.+|.+ .+.+++..+.
T Consensus 353 ~ll~~llknt~--------~~k~~hrk~dl~kil~~i~ 382 (411)
T KOG4035|consen 353 FLLKFLLKNTL--------YKKHRHRKHDLNKILNRIS 382 (411)
T ss_pred HHHHHHHhccc--------hhhhcCCchhHHHHHHHHh
Confidence 67777763322 33445543 3455555444
No 61
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=36.83 E-value=4.5e+02 Score=28.74 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchh
Q 003320 325 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 404 (830)
Q Consensus 325 i~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 404 (830)
+...|.++|..+|..|+..|..+++.=|.- .+-+++-..|++..++.+ +...++..- ..+|..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhh
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHH
Q 003320 405 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 484 (830)
Q Consensus 405 ~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~ 484 (830)
-..+++.+++++ .++......=..+.+||-+++.+|.--+ .=+..+.+..+++
T Consensus 78 ~~~i~~~l~~~~-------------------------~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQNV-------------------------DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHhC-------------------------ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Q ss_pred hhh-ccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHH
Q 003320 485 LTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 529 (830)
Q Consensus 485 Ll~-~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f 529 (830)
++. .|+.=--+-+.+.+|.++..-| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
No 62
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=35.37 E-value=7.2e+02 Score=28.32 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=117.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHH----HHHHHHhcCCcchHHHHHHHHhccCChhHHH
Q 003320 310 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQEGIPLLGLLVKGMITDFGEDMHC 385 (830)
Q Consensus 310 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPsl----vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~ 385 (830)
.+++..+.++|++..+-..|..=+-..|-.++.|+..++-+.+.. ...|+.++- .-++..|+++-= ++.+..
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~-peil~~L~~gy~---~~dial 141 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHR-PEILDILLRGYE---NPDIAL 141 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGG---STTTHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCC-HHHHHHHHHHhc---Cccccc
Confidence 678999999999999999999999999999999999888876532 356776641 224455554432 333333
Q ss_pred HHHHHHHHhcCCCCCCchhhhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhh
Q 003320 386 QFLEILRSLLDSYTLSGAQRDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH 464 (830)
Q Consensus 386 Ql~eaLk~LLDp~~m~~~e~d~fL~-~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~ 464 (830)
-...+||..+--+. +.. .+|+.++..+|+-+... .+ . ..+..+.-+=|||+ .
T Consensus 142 ~~g~mlRec~k~e~--------l~~~iL~~~~f~~ff~~~~~~------------~F--d-iasdaf~t~~~llt----~ 194 (335)
T PF08569_consen 142 NCGDMLRECIKHES--------LAKIILYSECFWKFFKYVQLP------------NF--D-IASDAFSTFKELLT----R 194 (335)
T ss_dssp HHHHHHHHHTTSHH--------HHHHHHTSGGGGGHHHHTTSS------------SH--H-HHHHHHHHHHHHHH----S
T ss_pred hHHHHHHHHHhhHH--------HHHHHhCcHHHHHHHHHhcCC------------cc--H-hHHHHHHHHHHHHh----c
Confidence 44455555442111 111 23344444444433110 00 1 22345566666665 2
Q ss_pred CCcchhhhHhhc--hHHHHHHHhhhccchhHHHHHHHHHHHHhcC--chhHHHHHHHhhCCHHHHHHHHHHh
Q 003320 465 HPYRIKCNFLLN--NVVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 532 (830)
Q Consensus 465 H~yriK~~il~~--nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l--~Defy~ryiIk~nLf~PIl~~f~~n 532 (830)
|.--...|+..| .+....-+|+.+..=.-+.-+||++..++.- +=.+..||+-..+-++-||.++.+.
T Consensus 195 hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~ 266 (335)
T PF08569_consen 195 HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK 266 (335)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc
Confidence 444445555544 2567788899998888899999999998754 3366689999999999988777543
No 63
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=35.36 E-value=6.3e+02 Score=27.61 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHhcCC-CCCCc--------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHH
Q 003320 380 GEDMHCQFLEILRSLLDS-YTLSG--------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEI 450 (830)
Q Consensus 380 d~glk~Ql~eaLk~LLDp-~~m~~--------~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~l 450 (830)
|.++-.-+.-.+|-||.- +.+.. .-++.++..|++..+..|+--+... +. ..+-
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~-~~----------------~~~f 195 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASS-PQ----------------ESDF 195 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhC-cc----------------ccch
Confidence 445555566778888863 33221 1467899999988877776666542 10 0111
Q ss_pred HHHHHHHHHHHHhhCCcc
Q 003320 451 LSNICELLCFCVLHHPYR 468 (830)
Q Consensus 451 l~~l~ELL~Fcv~~H~yr 468 (830)
-.+++|++++..+.+...
T Consensus 196 ~~~lLEIi~ll~k~~~p~ 213 (266)
T PF04821_consen 196 NLLLLEIIYLLFKGQDPE 213 (266)
T ss_pred hhHHHHHHHHHHcCCCHH
Confidence 238999999999888543
No 64
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=34.71 E-value=62 Score=23.78 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.9
Q ss_pred hhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 470 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 470 K~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
+..+...+.+..++.|+.+.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 556778889999999999888899999999999874
No 65
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=33.23 E-value=80 Score=31.14 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK 302 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK 302 (830)
..|..|...|+||+.+.+||++++.++--++..++
T Consensus 67 ~~m~~l~~aL~dp~Is~erK~~~l~yIaSya~~c~ 101 (126)
T PF07560_consen 67 STMHQLIKALQDPTISKERKREALNYIASYADACP 101 (126)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHhccCc
Confidence 46888889999999999999999999988877554
No 66
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=32.20 E-value=1.4e+02 Score=30.65 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=51.6
Q ss_pred HhhhcccCCCCCCc-cchHH-HhhhcCCceeeeecC---ChHHHHHHHhhhhcceeeehhcccccchhhHHhhHHHHHhh
Q 003320 181 IIGSLEYDPDVPHV-QHHRN-FLKEHVVFKEAIPIR---DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGN 255 (830)
Q Consensus 181 VVG~LEYDPe~p~~-~nHR~-fL~~~a~FKEVVPI~---d~~i~~KIHqTYRLqYLKDVVLaRiLDD~t~s~LnSlIffN 255 (830)
.-|||+.||.|-.. ..-|. ++ ..+|. +|-. =..+..-+...+-+.|..|. .++.+|++++.-+.+.+...
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l--P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~ 77 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL--PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQ 77 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC--ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHH
Confidence 45999999987753 11111 11 12222 1111 12333444556667777774 57889999998888755444
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhC
Q 003320 256 NAYVVSLLKDDSTFIQELFARLR 278 (830)
Q Consensus 256 qveIV~~Lq~d~~FL~eLF~~l~ 278 (830)
--.|-+-=-.++-||+|||..+.
T Consensus 78 lkrl~~s~~kg~~ll~EL~~~r~ 100 (160)
T PF15005_consen 78 LKRLTDSDLKGEPLLKELVWMRQ 100 (160)
T ss_pred HHHHhcCCcccchHHHHHHHHHH
Confidence 33333332234567777777654
No 67
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.61 E-value=7.3e+02 Score=27.22 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=67.2
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH-HHhcChHHHHHHHHh
Q 003320 283 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL-FLNQDPNLLRSYVVR 361 (830)
Q Consensus 283 ~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~-iiehdPslvR~~i~~ 361 (830)
+..-|..++.-|=-||-+.|.+-.+. +.++-.++..++..++..|.-++.- ++-|++..+......
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44788999999999998887553221 1223334455678888888777665 456777765543321
Q ss_pred ---cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 003320 362 ---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 398 (830)
Q Consensus 362 ---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 398 (830)
.....++.++.+.+-.+ ++.++....|.+-.||=..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence 11246777877776665 8889999999887776443
No 68
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=31.39 E-value=2.1e+02 Score=31.18 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=50.7
Q ss_pred hCCcchhhhHhhchHHHHHHHhhhc-----------cchhHHHHHHHHHHHHhcCch-----------hHHHHH----HH
Q 003320 464 HHPYRIKCNFLLNNVVDKVLLLTRR-----------REKYLVVAAVRFVRTILSRHD-----------EHLINH----FV 517 (830)
Q Consensus 464 ~H~yriK~~il~~nll~kVl~Ll~~-----------~~K~L~LaAlRFlR~iI~l~D-----------efy~ry----iI 517 (830)
+|-+..|.-|+..+++.-|+.++.. .+.-+.=-.|=|+|+++...| ...+.- +-
T Consensus 96 ~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 96 KYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 4445678889998888777765421 122233345889999998833 222222 23
Q ss_pred hhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 003320 518 KNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE 553 (830)
Q Consensus 518 k~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~e 553 (830)
+.++++-++.+.-.- +.+-.+..+||+|.+|-++
T Consensus 176 ~~~v~~lLL~l~s~~--~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 176 ESGVLDLLLTLASSP--QESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HcCHHHHHHHHHhCc--cccchhhHHHHHHHHHHcC
Confidence 566666666544332 1122444777777776553
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=31.05 E-value=1.8e+02 Score=24.95 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 003320 322 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 391 (830)
Q Consensus 322 ~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 391 (830)
++.+..++++++..+|..++.-|..+= +...+..|++.+-.+.+..++.....+|
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i~---------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRIG---------------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCH---------------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 566677778888888887776655430 1224456666666666777776665554
No 70
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=30.95 E-value=7.3e+02 Score=27.07 Aligned_cols=186 Identities=15% Similarity=0.234 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh--hhccChHhHHHHHHHHH-hcCcHHHHHHHHcCCCchhhhhhhHH
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL--SKSLQMVQQLRLFRDLM-NEGIFDIVTDALQSQDKKLVLTGTDI 343 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~i--sK~LQ~~~R~~lf~~Lv-~~GL~~vi~~~L~~~d~~ir~~atDI 343 (830)
+..|++|...++...-+ |+|+.+.+ +..-. ..+.+.++ +.|.+++|...|.++++.+|..|...
T Consensus 11 ~~~l~~Ll~lL~~t~dp---------~i~e~al~al~n~aa----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~a 77 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDP---------FIQEKALIALGNSAA----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNA 77 (254)
T ss_pred HHHHHHHHHHHhcCCCh---------HHHHHHHHHHHhhcc----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHH
Confidence 45678888887743322 34444322 22211 12444555 66999999999999999999888877
Q ss_pred HHHHHhcChHH--HHHHHHhcCCcchHHHHHHHHhcc-CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 003320 344 LILFLNQDPNL--LRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 420 (830)
Q Consensus 344 L~~iiehdPsl--vR~~i~~qe~~~Ll~~Li~~ll~d-~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L 420 (830)
|..+-....+. ++. .+..+++..++. -+.. .| ..+||.|.. |..+ +.+-..+ .++++.|
T Consensus 78 L~Nls~~~en~~~Ik~---------~i~~Vc~~~~s~~lns~--~Q-~agLrlL~n---Ltv~--~~~~~~l-~~~i~~l 139 (254)
T PF04826_consen 78 LNNLSVNDENQEQIKM---------YIPQVCEETVSSPLNSE--VQ-LAGLRLLTN---LTVT--NDYHHML-ANYIPDL 139 (254)
T ss_pred HHhcCCChhhHHHHHH---------HHHHHHHHHhcCCCCCH--HH-HHHHHHHHc---cCCC--cchhhhH-HhhHHHH
Confidence 76554444332 222 344556655553 2333 34 346777743 3222 1111122 3467777
Q ss_pred HHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhcc-chhHHHHHHH
Q 003320 421 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVR 499 (830)
Q Consensus 421 ~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~-~K~L~LaAlR 499 (830)
+.-|..+. ..+-.+.+.+|.-....-. +-..+++...+...+.|+... .+-+-+-+|.
T Consensus 140 l~LL~~G~-------------------~~~k~~vLk~L~nLS~np~--~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 140 LSLLSSGS-------------------EKTKVQVLKVLVNLSENPD--MTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred HHHHHcCC-------------------hHHHHHHHHHHHHhccCHH--HHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 75443210 0112244455554444333 234667777888888888776 5777788888
Q ss_pred HHHHH
Q 003320 500 FVRTI 504 (830)
Q Consensus 500 FlR~i 504 (830)
||-++
T Consensus 199 ~~~ni 203 (254)
T PF04826_consen 199 FFENI 203 (254)
T ss_pred HHHHH
Confidence 88876
No 71
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.96 E-value=7e+02 Score=27.94 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=42.3
Q ss_pred CCcHHhHHHHHHHHHHHHHhh--hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 281 TTLEESKKNLVHFLHEFCGLS--KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 281 ~~~~e~rrdlV~FL~E~c~is--K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
..-++-|.....||+.++..+ .-++.+ ...|+. +++.|.|+++|++..+...|.++|..+++
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 334678888888888887653 111211 112222 46788999999999999999888876654
No 72
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.69 E-value=1.1e+02 Score=36.79 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---HcCC---CchhhhhhhHHHHHHHhcChHHHHHHH
Q 003320 287 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQSQ---DKKLVLTGTDILILFLNQDPNLLRSYV 359 (830)
Q Consensus 287 rrdlV~FL~E~c~isK~LQ-~~~R~~lf~~Lv~~GL~~vi~~~---L~~~---d~~ir~~atDIL~~iiehdPslvR~~i 359 (830)
..+++.+|.+.|.-+..-+ ...+..+.++|-+.|+-.++... +... ...+|.+|+.-|-.+..+.|..+|..+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 4456777777777554442 35667788999999955555444 4444 456899999888888999999999876
Q ss_pred Hh
Q 003320 360 VR 361 (830)
Q Consensus 360 ~~ 361 (830)
++
T Consensus 564 ~~ 565 (618)
T PF01347_consen 564 LP 565 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 73
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=29.66 E-value=5.7e+02 Score=25.36 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+.++.....++....+. ...+-|+|.+...=+...|.. +.+|..-|++.++.+...|..+|-+|+.
T Consensus 5 ~~~~I~kATs~~l~~~d----w~~ileicD~In~~~~~~k~a----------~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 5 FDELIEKATSELLGEPD----LASILEICDMIRSKDVQPKYA----------MRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred HHHHHHHHcCcccCccC----HHHHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45556666554432221 334557777765433334433 4677777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
+--..++..+.. ..+++.|++.+-...++.++..+.+.+..+-
T Consensus 71 NCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 71 NCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 865555555544 4588888876655667777777777776654
No 74
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.95 E-value=4.7e+02 Score=25.32 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=61.1
Q ss_pred HHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHH
Q 003320 293 FLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLV 372 (830)
Q Consensus 293 FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li 372 (830)
.+-++|.+..+-....|.. ..+|..-|++.++.+...|..+|=+|+.+....++..+.. ..+++.|+
T Consensus 20 ~il~icd~I~~~~~~~k~a----------~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s---~~fl~~l~ 86 (133)
T cd03561 20 LNLELCDLINLKPNGPKEA----------ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD---KEFLLELV 86 (133)
T ss_pred HHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh---HHHHHHHH
Confidence 4456777665554444443 4677778889999999999999999999888777766655 33565677
Q ss_pred HHHhc--cCChhHHHHHHHHHHHh
Q 003320 373 KGMIT--DFGEDMHCQFLEILRSL 394 (830)
Q Consensus 373 ~~ll~--d~d~glk~Ql~eaLk~L 394 (830)
+.+-. ..++-++..+.+.+..+
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH
Confidence 66654 35666666666666555
No 75
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.94 E-value=3.2e+02 Score=25.21 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
.-+++.+..+.||.. .-|-.++..|++++.--. +...--.+++.++...|+++|+-|-..|+-.|..+
T Consensus 3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 346677777877775 367788888888775322 11222346778888899999999999999999999
Q ss_pred HhcChHHH
Q 003320 348 LNQDPNLL 355 (830)
Q Consensus 348 iehdPslv 355 (830)
.+..|.-+
T Consensus 71 a~~~p~~v 78 (92)
T PF10363_consen 71 ADRHPDEV 78 (92)
T ss_pred HHHChHHH
Confidence 99999843
No 76
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=1.6e+03 Score=29.91 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=23.8
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHhcCchh
Q 003320 478 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDE 510 (830)
Q Consensus 478 ll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~De 510 (830)
++.-|-..+.++....+-+||+|+|.+|.--.+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 334444557778888999999999998755443
No 77
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.19 E-value=32 Score=34.25 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.6
Q ss_pred eEeccCCccccccccccCccc
Q 003320 39 ISWRDPEYSTELALSFQEPTG 59 (830)
Q Consensus 39 IvWte~~~g~DlALSFQe~~G 59 (830)
++|+||. |+|.||.|.-.++
T Consensus 66 vsWtEPT-GTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPT-GTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCC-CceEEEEeccccc
Confidence 6899997 9999999987765
No 78
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=27.10 E-value=45 Score=34.57 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=57.0
Q ss_pred HHHHHHHhhChh---hHHHH---HHHHhcChHHHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHH
Q 003320 104 LILKTVTESGIA---DQMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 157 (830)
Q Consensus 104 eI~~~i~~~s~~---~rerl---a~~Il~~~~YI~KLl~LF~~cEd--------------------le~~~~Lh~L~~Iv 157 (830)
+|.+++..++.. .|-++ .+-++.++=.++.|+.-.+..|- -.+.....-+-...
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 555666544322 34444 23344566667777665444332 22334456678889
Q ss_pred HHHHHcCCh--hhHhHhhcchhHhHHhhhcccC
Q 003320 158 KGIILLNSP--QIFEKIFGDELMMDIIGSLEYD 188 (830)
Q Consensus 158 K~IilLNd~--~IiE~llsDe~i~~VVG~LEYD 188 (830)
|++++||.. .|+|+..+.+....-+.||||=
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 999999976 6899999999999999999994
No 79
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.76 E-value=3.8e+02 Score=26.12 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=51.0
Q ss_pred hHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcC
Q 003320 244 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEG 320 (830)
Q Consensus 244 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~L-Q~~~R~~lf~~Lv~~G 320 (830)
++.+|.+++-.--..+-..+. +..|+.+|...+.++...+.-|..++.++++--.--++- +.+.-...|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~-s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVA-SKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHH-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
Confidence 345566655554455555554 578999999999887766557788888888876554443 3344457888887766
No 80
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=26.32 E-value=1.3e+02 Score=22.79 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.7
Q ss_pred hhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 470 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 470 K~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
|..++..+.+..++.||++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999998864
No 81
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.30 E-value=9.5e+02 Score=26.89 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccC---C-----
Q 003320 310 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDF---G----- 380 (830)
Q Consensus 310 ~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdP-slvR~~i~~qe~~~Ll~~Li~~ll~d~---d----- 380 (830)
..+.+++++.- ++.|.-+|+.....+...+.-+|..|+.++. .+.|.. ++.=+.+ +..+.+++-... .
T Consensus 47 ~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v-~~~fd~~-~~~l~kll~~~~~~~~~~~~~ 123 (330)
T PF11707_consen 47 LELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREV-LRSFDFS-LKSLPKLLTPRKKEKEKDSES 123 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHH-HHhcCCc-hhhHHHHhccccccccccccc
Confidence 45788887665 8999999999998888899999999999554 666654 3321111 112222221110 0
Q ss_pred ----hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHH
Q 003320 381 ----EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 456 (830)
Q Consensus 381 ----~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~E 456 (830)
+.++..+..-+-.+|...+ ..-+..+|+. ..++..++... ..-.+++...+++
T Consensus 124 ~~~~~siR~~fI~F~Lsfl~~~~--~~~~~~lL~~------~~~~~~l~k~l---------------~~D~~~~v~~iL~ 180 (330)
T PF11707_consen 124 SKSKPSIRTNFIRFWLSFLSSGD--PELKRDLLSQ------KKLMSALFKGL---------------RKDPPETVILILE 180 (330)
T ss_pred cccCcCHHHHHHHHHHHHHccCC--HHHHHHHHHc------CchHHHHHhcc---------------cCCCHHHHHHHHH
Confidence 1333333333333332211 0011122221 11122222210 1113467778888
Q ss_pred HHHHHHhhCC---cchhhhHhhchHHHHHHHhhhccch----hHHHHHHHHHHHHh
Q 003320 457 LLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREK----YLVVAAVRFVRTIL 505 (830)
Q Consensus 457 LL~Fcv~~H~---yriK~~il~~nll~kVl~Ll~~~~K----~L~LaAlRFlR~iI 505 (830)
.|.=.|-... ...|..+++...+.+++.|-..... -++=.|-+||..+.
T Consensus 181 ~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 181 TLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred HHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
Confidence 8876665554 4578999999999999998877666 67777777777744
No 82
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=26.15 E-value=1.9e+02 Score=31.86 Aligned_cols=78 Identities=17% Similarity=0.407 Sum_probs=56.3
Q ss_pred HHHHHHHHH--HHhhCCcchhhhHhhchHHHHHHHhhh-----ccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHH
Q 003320 452 SNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 524 (830)
Q Consensus 452 ~~l~ELL~F--cv~~H~yriK~~il~~nll~kVl~Ll~-----~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~P 524 (830)
..+|-.|.- ||-.|+- .|..|++-++.-.+--.++ +..-+|+|++|-.+.+++..+|.-...|+....++..
T Consensus 65 nRVcnaLaLlQ~vAshpe-tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPE-TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH-TT-THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcChH-HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 455555433 6677765 5678888888755544432 2246999999999999999999999999999999988
Q ss_pred HHHHHH
Q 003320 525 IVDAFV 530 (830)
Q Consensus 525 Il~~f~ 530 (830)
-+..+.
T Consensus 144 cLr~me 149 (262)
T PF04078_consen 144 CLRIME 149 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887763
No 83
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=26.10 E-value=3.2e+02 Score=25.56 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHH-HHHHHHh
Q 003320 322 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNL-LRSYVVR 361 (830)
Q Consensus 322 ~~vi~~~L~~~d~~ir~~atDIL~~iiehdPsl-vR~~i~~ 361 (830)
+--|.-||.|=.+.||..++.+|-.++++.|.. ++++-.+
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 345677888999999999999999999999998 7766544
No 84
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.06 E-value=6.3e+02 Score=25.12 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh--hHHHHHHH
Q 003320 312 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE--DMHCQFLE 389 (830)
Q Consensus 312 lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~--glk~Ql~e 389 (830)
.|..+++..+.+.+-..+.+.+..+-..+.-|+..++.+ .|.++..| =..++..++..++..... --|.-++|
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~e-le~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLE-LEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 344455555555555555445555555556666555522 34433322 123444444444432221 22333445
Q ss_pred HHHHhc
Q 003320 390 ILRSLL 395 (830)
Q Consensus 390 aLk~LL 395 (830)
+++.+.
T Consensus 140 ~l~~l~ 145 (168)
T PF12783_consen 140 ILRELC 145 (168)
T ss_pred HHHHHH
Confidence 555554
No 85
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.80 E-value=1.1e+03 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 003320 368 LGLLVKGMITDFGEDMHCQFLEILRSLLDS 397 (830)
Q Consensus 368 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 397 (830)
...++..++.|.+.|++.|.+..||-|.+.
T Consensus 505 ~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 505 PANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 344566678999999999999999999876
No 86
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=25.28 E-value=2.3e+02 Score=35.56 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=59.3
Q ss_pred hhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 003320 469 IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFE 548 (830)
Q Consensus 469 iK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfe 548 (830)
-|.-+...+++.++.+++.+++.-++-.|+|.+-++= -|.-....|++.|++.+++.++... |.- ..|+-++.
T Consensus 323 NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~----~~~-~val~iLy 395 (708)
T PF05804_consen 323 NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP----NFR-EVALKILY 395 (708)
T ss_pred HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC----chH-HHHHHHHH
Confidence 3777888999999999999999999999999998853 3444588999999999999888532 222 34667776
Q ss_pred HHH
Q 003320 549 YIR 551 (830)
Q Consensus 549 fIr 551 (830)
.|.
T Consensus 396 ~LS 398 (708)
T PF05804_consen 396 NLS 398 (708)
T ss_pred Hhc
Confidence 663
No 87
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=24.72 E-value=32 Score=37.06 Aligned_cols=59 Identities=20% Similarity=0.481 Sum_probs=34.1
Q ss_pred hHHHHHH------HhhCCHHHHHHHHHHhC------CCCcchHHHHHHHHHHHHhhCh----------HHHHHHHHHhhH
Q 003320 510 EHLINHF------VKNNLLKPIVDAFVANG------NRYNLLNSAVLELFEYIRKENL----------KSLVKYIVDSFW 567 (830)
Q Consensus 510 efy~ryi------Ik~nLf~PIl~~f~~ng------~R~NLlnSA~LElfefIr~eNi----------k~Li~hlve~y~ 567 (830)
||.+|.+ +..|+|.| +-| ++| +.||= +++.+++.+|||.-|| .+|+.-|| |-
T Consensus 170 Efi~~ll~ii~rf~~~n~fp~--kn~-~~gpnv~~~P~y~~-ypT~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLv--yD 243 (301)
T COG5111 170 EFIARLLEIIERFLEKNLFPR--KNF-EEGPNVFYAPKYED-YPTLEDIMNYVRNVNILSVPLRLDNLESLADVLV--YD 243 (301)
T ss_pred HHHHHHHHHHHHHHHhccCCc--cch-hcCCccccCCccCC-CccHHHHHHHHHhceeeeccccHHHHHHHhHhee--ec
Confidence 5665532 45666666 222 233 33432 5789999999998554 55554444 55
Q ss_pred hhccccc
Q 003320 568 NQLVNFE 574 (830)
Q Consensus 568 ~~l~~i~ 574 (830)
.+++++.
T Consensus 244 gKvEK~~ 250 (301)
T COG5111 244 GKVEKLH 250 (301)
T ss_pred Ceeeeec
Confidence 5555543
No 88
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.38 E-value=1.6e+03 Score=28.84 Aligned_cols=153 Identities=15% Similarity=0.262 Sum_probs=88.0
Q ss_pred HhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHH----------HhcCcH
Q 003320 253 HGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL----------MNEGIF 322 (830)
Q Consensus 253 ffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~L----------v~~GL~ 322 (830)
.|=|+|-+++++++ .|+.+=.+-|-- ..=-+.|.|++..|-.+. -+.|+...+...=-+| +-+.|.
T Consensus 69 hFGqieclKLias~-~f~dKRiGYLaa-mLlLdE~qdvllLltNsl--knDL~s~nq~vVglAL~alg~i~s~Emardla 144 (866)
T KOG1062|consen 69 HFGQIECLKLIASD-NFLDKRIGYLAA-MLLLDERQDLLLLLTNSL--KNDLNSSNQYVVGLALCALGNICSPEMARDLA 144 (866)
T ss_pred cchhhHHHHHhcCC-CchHHHHHHHHH-HHHhccchHHHHHHHHHH--HhhccCCCeeehHHHHHHhhccCCHHHhHHhh
Confidence 57788899999875 676655443210 000124455555544432 1233333221111111 234567
Q ss_pred HHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCc
Q 003320 323 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSG 402 (830)
Q Consensus 323 ~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~ 402 (830)
+-++..|++.++.+|-.|+=-.+-++--.|+++-.|+.. .+.++++++.|+..-....+-.++--
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~----------~~~lL~ek~hGVL~~~l~l~~e~c~~----- 209 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA----------FRKLLCEKHHGVLIAGLHLITELCKI----- 209 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH----------HHHHHhhcCCceeeeHHHHHHHHHhc-----
Confidence 888999999999999998877788888999988776544 44566778877743222222222110
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 403 AQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 403 ~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
..+-++ .|+++.+.||.-|...
T Consensus 210 --~~~~l~-~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 210 --SPDALS-YFRDLVPSLVKILKQL 231 (866)
T ss_pred --CHHHHH-HHHHHHHHHHHHHHHH
Confidence 012233 3455888888877664
No 89
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=24.22 E-value=1.9e+02 Score=24.06 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHH----HhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 003320 258 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC----GLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 329 (830)
Q Consensus 258 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c----~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L 329 (830)
++..+++++.+|++-||+.=. +..=+..+..++++.. .....-.. .+..++.+++-.|++.+|..=|
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~----~~~f~~~l~~~~~~~~~~~~~~~~~~~~-~~~~y~~~f~~sg~igvi~~Wl 76 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNG----DPNFQERLKELIKEWITEYINENSPDND-DPEEYLISFIVSGIIGVIQWWL 76 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777666666665322 2222223333333332 11111111 1122778889999999887543
No 90
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.93 E-value=4.3e+02 Score=25.88 Aligned_cols=55 Identities=7% Similarity=0.264 Sum_probs=42.9
Q ss_pred hHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHH-hCC
Q 003320 477 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA-NGN 534 (830)
Q Consensus 477 nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~-ng~ 534 (830)
.++..+.+-|+.+..|+++-|||+++.|+....+-|.+.+.+|- +++..+.. .|+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~f~g~ 93 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECANYKGP 93 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHHcCCC
Confidence 55666666677788999999999999999999999999999883 45555543 443
No 91
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=1.5e+03 Score=28.02 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=87.6
Q ss_pred HhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCC----C------cHHhHHHHHHHHHHHHHhhhccChHhHHHHHH-
Q 003320 246 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPT----T------LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFR- 314 (830)
Q Consensus 246 s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~----~------~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~- 314 (830)
..++--+.+|..|+..-+..+..|+..-=..+.... + +...---.+.||+- |+++. .+.+
T Consensus 355 lll~~~ll~n~~e~~~~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS---~SrSV------~~LRT 425 (743)
T COG5369 355 LLLTPELLFNMYELTAGLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKS---MSRSV------TFLRT 425 (743)
T ss_pred hhcCHHHHHhHHHHhhhhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHH---hhHHH------HHHHh
Confidence 357778899999999988888777653322221110 1 11111123334432 33322 2333
Q ss_pred HHHhcCcHHHHHHHHcCCCchhhhhhh-HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 003320 315 DLMNEGIFDIVTDALQSQDKKLVLTGT-DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 393 (830)
Q Consensus 315 ~Lv~~GL~~vi~~~L~~~d~~ir~~at-DIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 393 (830)
.|.+..+-..+-.+|.+++-.|...+| +|.--++..+|. |+.+++ ..++++|++.+. .+|..++..-.=++|-
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL--~~~fL~---~~iIdvl~~~v~-sKDdaLqans~wvlrH 499 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL--GAGFLE---KSIIDVLVNLVM-SKDDALQANSEWVLRH 499 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccch--HHHHHH---hhHHHHHHHHhh-cchhhhhhcchhhhhh
Confidence 366666777788888886655554433 565566766653 666666 558888887654 5677777555556665
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 003320 394 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 424 (830)
Q Consensus 394 LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 424 (830)
|+ -+.++.+=+++.-+..|..++.-.
T Consensus 500 lm-----yncq~~ekf~~Lakig~~kvl~~~ 525 (743)
T COG5369 500 LM-----YNCQKNEKFKFLAKIGVEKVLSYT 525 (743)
T ss_pred hh-----hcCcchhhhhhHHhcCHHHHHHHh
Confidence 53 222333333333344455554443
No 92
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.07 E-value=6e+02 Score=30.53 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=61.4
Q ss_pred HHHHHhhcC-----HH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 003320 258 YVVSLLKDD-----ST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 328 (830)
Q Consensus 258 eIV~~Lq~d-----~~----FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~ 328 (830)
+|..+++++ +. .|-.+|..+.+.. +.-.|+.+.+.|+++|.- | .. -+..=.+.-+-++|+-+
T Consensus 310 el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~----Q---~~-~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 310 ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTN----Q---PA-RLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHh----c---hH-hhhchHHHHHHHHHHHH
Confidence 577777776 32 3445667776532 345788899999999963 1 12 22333445566777777
Q ss_pred HcCCCchhhhhhhHHHHHHHhcChHH
Q 003320 329 LQSQDKKLVLTGTDILILFLNQDPNL 354 (830)
Q Consensus 329 L~~~d~~ir~~atDIL~~iiehdPsl 354 (830)
-...|..++.++-|-+..+-.|+|..
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchh
Confidence 77888899999999999999999963
No 93
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.48 E-value=4.6e+02 Score=25.59 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=48.9
Q ss_pred hHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHHHHHhhhccChHh-HHHHHHHHHhcC
Q 003320 244 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQMVQ-QLRLFRDLMNEG 320 (830)
Q Consensus 244 t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e--~rrdlV~FL~E~c~isK~LQ~~~-R~~lf~~Lv~~G 320 (830)
++.+|.+++-.-...+-..+- +..|+.+|...+.++..... -|..++.+|++.-.-.++..... =..+|+.|-..|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 345666655544444444454 46899999999887776654 67778888887655444433222 246788887776
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=22.37 E-value=1.8e+02 Score=23.26 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.4
Q ss_pred hhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 003320 335 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 392 (830)
Q Consensus 335 ~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 392 (830)
.+|..|+-.|-.+.++.+..++.++-+ ++..|+..| .|.+..++.....+|-
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~-----~~~~L~~~L-~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPE-----LLPALIPLL-QDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHH-----HHHHHHHHT-TSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHH-----HHHHHHHHH-cCCCHHHHHHHHHHHh
Confidence 467777777777778888887776544 677777655 7777788877777764
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=1.3e+03 Score=29.92 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=51.0
Q ss_pred hcCcHHHHHHHHcCCC-chhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 318 NEGIFDIVTDALQSQD-KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 318 ~~GL~~vi~~~L~~~d-~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
-.-+.++|--.|+|+. ..|...|+=-|.+++|--|..+- +++.. --+-+|+.-|++=.-..++.|..+||+.|=
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a-~vV~~---~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA-IVVDE---HAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh-eeecc---cchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3446678888888764 57888888888999998887532 33332 223345555555556678899999998874
No 96
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.36 E-value=3.3e+02 Score=27.12 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccch---------hHHHHHHHHHHHHhcCchhHHHHHHHhhCCH
Q 003320 452 SNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREK---------YLVVAAVRFVRTILSRHDEHLINHFVKNNLL 522 (830)
Q Consensus 452 ~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K---------~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf 522 (830)
..+-+|=...-.+..-+++.|+ ..+.+..++.+|....+ .+...+|||||+++..... ....+-..+.+
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v 160 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSV 160 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHH
T ss_pred HHHHHHHHHhccCCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHH
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 523 KPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 523 ~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
..|...+ .+.+=-+--.++|++-+|
T Consensus 161 ~~i~~~L---~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 161 NLIALSL---DSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHT-----TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHH
No 97
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=20.86 E-value=1.2e+03 Score=28.41 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 003320 658 RSGGLVDYDDDEDDEDYRPPP 678 (830)
Q Consensus 658 ~~~~LVdY~ddedd~~~~~~~ 678 (830)
.+++||=++-||||||.+|.|
T Consensus 461 ~~ddl~Lfdlddd~dd~~~~p 481 (717)
T PF05505_consen 461 APDDLVLFDLDDDDDDNKPVP 481 (717)
T ss_pred CCCCeeeeccccCCcccccCc
Confidence 456788888888888888887
No 98
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.12 E-value=1.7e+02 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..+++.|.++.+-..|++++..++..++..|..+
T Consensus 6 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 6 QAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567889999998889988888888888877654
Done!