Query 003320
Match_columns 830
No_of_seqs 202 out of 261
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 21:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 97.9 0.0017 5.9E-08 64.2 22.8 218 270-530 4-222 (252)
2 1xqr_A HSPBP1 protein; armadil 97.7 0.0057 1.9E-07 65.3 24.3 203 266-507 26-239 (296)
3 4db8_A Armadillo-repeat protei 97.4 0.019 6.4E-07 57.3 21.7 221 268-531 12-233 (252)
4 2jdq_A Importin alpha-1 subuni 97.4 0.017 5.9E-07 62.2 22.3 224 268-531 64-287 (450)
5 4hxt_A De novo protein OR329; 97.3 0.028 9.5E-07 55.4 21.7 203 268-512 44-247 (252)
6 4b8j_A Importin subunit alpha- 97.3 0.059 2E-06 60.2 25.8 221 269-530 118-338 (528)
7 4b8j_A Importin subunit alpha- 97.3 0.13 4.4E-06 57.5 28.5 237 268-550 160-399 (528)
8 1wa5_B Importin alpha subunit; 97.1 0.079 2.7E-06 59.4 25.2 237 268-550 215-455 (530)
9 1wa5_B Importin alpha subunit; 97.1 0.049 1.7E-06 61.1 22.4 223 268-531 130-352 (530)
10 3tpo_A Importin subunit alpha- 96.8 0.35 1.2E-05 54.6 27.1 241 269-552 205-449 (529)
11 4db6_A Armadillo repeat protei 96.7 0.24 8.2E-06 47.8 21.6 194 270-505 14-208 (210)
12 4db6_A Armadillo repeat protei 96.7 0.23 7.8E-06 48.0 21.4 183 315-530 7-190 (210)
13 2jdq_A Importin alpha-1 subuni 96.7 0.27 9.1E-06 52.9 24.0 202 268-510 192-394 (450)
14 3tpo_A Importin subunit alpha- 96.7 0.081 2.8E-06 59.8 20.2 186 314-530 156-345 (529)
15 4db8_A Armadillo-repeat protei 96.6 0.29 9.8E-06 48.6 21.9 196 268-505 54-250 (252)
16 3ul1_B Importin subunit alpha- 96.5 0.5 1.7E-05 53.3 25.5 242 269-552 186-430 (510)
17 3ul1_B Importin subunit alpha- 96.2 0.086 2.9E-06 59.5 16.8 185 314-529 137-325 (510)
18 1jdh_A Beta-catenin; beta-cate 96.0 2.4 8E-05 46.6 26.7 234 268-546 101-334 (529)
19 2z6h_A Catenin beta-1, beta-ca 95.7 0.79 2.7E-05 52.9 22.4 238 268-549 224-484 (644)
20 4fdd_A Transportin-1; heat rep 95.6 1.7 5.9E-05 51.5 25.2 223 266-513 126-395 (852)
21 2z6h_A Catenin beta-1, beta-ca 95.6 2.7 9.3E-05 48.4 26.0 236 268-548 98-333 (644)
22 1rrp_B Nuclear pore complex pr 95.2 0.015 5.1E-07 55.5 4.6 69 4-72 57-133 (134)
23 4fdd_A Transportin-1; heat rep 95.0 3.4 0.00011 49.1 25.1 57 449-507 230-286 (852)
24 2z6g_A B-catenin; FULL-length, 95.0 6.5 0.00022 46.9 27.3 257 265-544 189-465 (780)
25 1jdh_A Beta-catenin; beta-cate 94.7 1 3.6E-05 49.4 18.3 184 316-532 13-197 (529)
26 4gmo_A Putative uncharacterize 94.6 0.55 1.9E-05 55.3 16.8 191 314-520 29-227 (684)
27 1ibr_B P95, importin beta-1 su 94.2 3.5 0.00012 44.0 20.6 210 267-507 34-289 (462)
28 2z6g_A B-catenin; FULL-length, 93.8 2.3 7.9E-05 50.7 19.9 211 270-530 117-328 (780)
29 3b2a_A TON_1937, putative unch 93.6 1.1 3.7E-05 47.0 14.3 151 318-508 31-181 (265)
30 2qk2_A LP04448P; mini spindles 93.4 3.8 0.00013 40.9 18.0 193 273-516 20-216 (242)
31 1ibr_B P95, importin beta-1 su 93.1 3.2 0.00011 44.3 17.9 210 268-507 172-396 (462)
32 3nmw_A APC variant protein; AR 92.9 9.9 0.00034 41.2 21.5 213 284-530 98-315 (354)
33 3now_A UNC-45 protein, SD10334 92.5 9.3 0.00032 46.3 22.4 245 265-543 418-686 (810)
34 1xqr_A HSPBP1 protein; armadil 92.4 8.3 0.00028 40.8 19.7 184 335-552 55-238 (296)
35 2bpt_A Importin beta-1 subunit 92.2 19 0.00067 41.8 24.4 206 321-550 455-666 (861)
36 1w63_A Adapter-related protein 92.2 11 0.00037 43.6 21.9 175 322-571 315-493 (618)
37 3now_A UNC-45 protein, SD10334 92.2 4.7 0.00016 48.8 19.3 200 269-551 581-781 (810)
38 3grl_A General vesicular trans 92.0 5.1 0.00018 47.3 18.8 105 450-555 138-244 (651)
39 1w63_A Adapter-related protein 91.9 16 0.00055 42.1 22.9 118 320-464 142-264 (618)
40 1qgr_A Protein (importin beta 91.8 12 0.00041 43.7 22.0 230 268-529 172-417 (876)
41 3nmz_A APC variant protein; pr 91.6 7 0.00024 44.1 19.0 211 284-530 214-431 (458)
42 2vgl_A Adaptor protein complex 91.5 9.5 0.00033 44.3 20.5 66 321-394 147-214 (621)
43 2bpt_A Importin beta-1 subunit 91.0 14 0.00047 43.1 21.4 239 267-550 38-293 (861)
44 3opb_A SWI5-dependent HO expre 90.2 12 0.00041 45.1 20.0 262 262-550 370-727 (778)
45 1qgr_A Protein (importin beta 89.4 37 0.0013 39.5 23.7 269 269-570 409-700 (876)
46 1xm9_A Plakophilin 1; armadill 88.5 21 0.00072 39.4 19.3 208 270-505 4-219 (457)
47 3nmw_A APC variant protein; AR 87.3 11 0.00038 40.8 15.8 226 284-549 46-290 (354)
48 3nmz_A APC variant protein; pr 84.6 17 0.00057 41.0 16.0 205 315-550 184-407 (458)
49 2qk2_A LP04448P; mini spindles 83.7 19 0.00065 35.7 14.4 162 327-529 22-185 (242)
50 3grl_A General vesicular trans 82.9 68 0.0023 37.9 20.4 233 245-510 143-398 (651)
51 1xm9_A Plakophilin 1; armadill 82.6 59 0.002 35.8 19.2 176 322-531 4-196 (457)
52 2npp_B PP2A, B subunit, serine 82.3 5.3 0.00018 45.2 10.5 126 257-398 269-401 (449)
53 3fga_B Serine/threonine-protei 81.6 6 0.0002 44.2 10.5 249 99-399 98-369 (403)
54 3l6x_A Catenin delta-1; cateni 80.9 37 0.0013 39.5 17.3 159 368-552 310-477 (584)
55 1u6g_C TIP120 protein, CAND1; 79.8 71 0.0024 39.5 20.4 219 267-532 5-225 (1230)
56 3n7c_A ABR034WP; nuclear pore 77.9 2.6 8.8E-05 39.9 5.2 70 5-74 48-122 (130)
57 3ltm_A Alpha-REP4; protein eng 75.5 57 0.002 31.1 15.0 78 265-344 16-105 (211)
58 1u6g_C TIP120 protein, CAND1; 74.5 22 0.00076 44.0 13.7 199 268-507 86-285 (1230)
59 2qk1_A Protein STU2; STU2P, XM 73.0 60 0.0021 33.0 14.5 184 283-505 29-219 (249)
60 1egx_A VAsp, vasodilator-stimu 71.8 6.2 0.00021 36.5 6.1 62 8-71 48-110 (115)
61 2vgl_B AP-2 complex subunit be 71.5 63 0.0022 36.8 15.8 83 306-396 100-189 (591)
62 2vgl_A Adaptor protein complex 69.8 80 0.0027 36.5 16.3 67 324-399 333-401 (621)
63 1evh_A WH1 domain, protein (ME 69.2 7.5 0.00026 35.8 5.9 61 8-70 47-107 (112)
64 1qc6_A EVH1 domain from ENA/VA 69.0 6.5 0.00022 37.0 5.6 66 7-74 47-112 (130)
65 1xke_A RAN-binding protein 2; 65.6 6.4 0.00022 37.0 4.8 70 5-74 44-121 (130)
66 3tt9_A Plakophilin-2; cell adh 65.1 84 0.0029 32.1 13.5 114 270-395 10-123 (233)
67 2ec1_A Nucleoporin 50 kDa; ran 64.5 9.6 0.00033 35.7 5.8 68 5-72 46-124 (125)
68 1ddw_A GLGF-domain protein hom 63.0 7.2 0.00025 36.4 4.6 62 12-73 48-109 (120)
69 2jp2_A Spred-2, sprouty-relate 62.4 11 0.00039 35.4 5.9 61 8-70 60-120 (126)
70 1k5d_B RAN-specific GTPase-act 61.2 9.8 0.00033 38.6 5.5 70 5-74 84-162 (201)
71 1xod_A Spred1; sprouty, EVH1, 61.0 10 0.00035 35.3 5.2 62 8-71 51-112 (118)
72 2crf_A RAN binding protein 3; 59.7 9.5 0.00033 36.8 4.9 62 5-67 67-132 (150)
73 2y8g_A Ranbp3-B, RAN-binding p 58.5 11 0.00036 36.0 5.0 56 5-60 55-114 (138)
74 2vgl_B AP-2 complex subunit be 56.5 2.6E+02 0.0089 31.6 18.5 69 270-354 15-83 (591)
75 1wa5_C Importin alpha RE-expor 52.6 3.7E+02 0.013 32.2 21.6 90 259-357 26-127 (960)
76 2qk1_A Protein STU2; STU2P, XM 51.1 45 0.0015 33.9 8.7 76 267-349 145-220 (249)
77 3m1i_B RAN-specific GTPase-act 50.6 21 0.00072 35.9 5.9 69 5-73 110-187 (191)
78 1i2h_A PSD-ZIP45(homer-1C/VESL 49.2 14 0.00047 36.6 4.2 62 12-73 53-114 (168)
79 3ltj_A Alpharep-4; protein eng 47.3 1.8E+02 0.0063 27.2 15.1 25 321-345 77-101 (201)
80 4hat_B RAN-specific GTPase-act 47.0 23 0.00079 33.8 5.3 69 5-73 59-136 (140)
81 2of3_A ZYG-9; multifunctional 46.1 2.8E+02 0.0096 29.0 15.2 155 329-510 55-241 (266)
82 2jak_A Serine/threonine-protei 44.2 2.5E+02 0.0084 31.2 13.7 74 257-340 281-358 (392)
83 3a6p_A Exportin-5; exportin-5, 44.1 3.2E+02 0.011 34.1 16.4 148 266-424 132-303 (1204)
84 3m1i_C Exportin-1; heat repeat 42.7 99 0.0034 37.7 11.3 65 278-350 812-879 (1049)
85 1b3u_A Protein (protein phosph 41.6 3.7E+02 0.013 29.1 21.1 105 269-395 165-270 (588)
86 3ltm_A Alpha-REP4; protein eng 41.0 2.4E+02 0.008 26.6 16.6 44 303-346 30-76 (211)
87 1oyz_A Hypothetical protein YI 41.0 2.8E+02 0.0095 27.4 13.0 21 321-341 129-149 (280)
88 1b3u_A Protein (protein phosph 39.2 4.1E+02 0.014 28.9 20.8 190 283-529 100-290 (588)
89 3tt9_A Plakophilin-2; cell adh 39.1 2.5E+02 0.0084 28.6 11.9 81 467-549 42-122 (233)
90 3l6x_A Catenin delta-1; cateni 37.8 2.4E+02 0.0082 32.7 12.9 111 270-394 50-161 (584)
91 3gs3_A Symplekin, LD45768P; he 37.1 3.1E+02 0.011 28.4 12.5 61 268-343 53-113 (257)
92 3syx_A Sprouty-related, EVH1 d 32.3 40 0.0014 32.0 4.2 60 10-71 58-119 (130)
93 2jby_A M11L protein; apoptosis 30.9 75 0.0026 30.0 5.7 86 286-378 35-128 (145)
94 3m1i_C Exportin-1; heat repeat 30.0 8.2E+02 0.028 29.6 24.1 221 265-506 135-373 (1049)
95 1x5b_A Signal transducing adap 29.4 2.9E+02 0.0099 26.6 10.1 108 271-395 17-124 (163)
96 4ffb_C Protein STU2; tubulin f 28.3 4.6E+02 0.016 26.2 14.6 184 285-504 24-210 (278)
97 3vld_A DNA mismatch repair pro 25.8 7.9E+02 0.027 28.1 17.8 119 323-480 119-245 (500)
98 1juq_A ADP-ribosylation factor 25.2 4.7E+02 0.016 25.3 11.0 109 270-395 14-127 (171)
99 3zyq_A Hepatocyte growth facto 25.0 3.1E+02 0.011 27.7 9.8 111 269-396 8-118 (226)
100 1upk_A MO25 protein; transfera 25.0 6.9E+02 0.024 27.1 17.6 196 305-532 63-266 (341)
101 3tjz_B Coatomer subunit gamma; 25.0 1E+02 0.0036 33.5 6.6 64 321-394 140-203 (355)
102 2fv2_A RCD1 required for cell 23.8 95 0.0032 32.8 5.7 77 452-529 71-154 (268)
103 3ldz_A STAM-1, signal transduc 23.7 3.9E+02 0.013 24.9 9.6 106 271-394 7-112 (140)
104 3dad_A FH1/FH2 domain-containi 23.2 6.8E+02 0.023 27.2 12.4 153 261-426 144-315 (339)
105 1dvp_A HRS, hepatocyte growth 22.9 3.4E+02 0.012 27.0 9.6 110 270-396 6-115 (220)
106 3o2t_A Symplekin; heat repeat, 22.8 5.9E+02 0.02 28.0 12.1 71 268-356 63-133 (386)
107 3eg5_B Protein diaphanous homo 22.2 6.5E+02 0.022 27.3 12.4 132 284-424 134-273 (383)
108 1mhq_A ADP-ribosylation factor 22.2 4.9E+02 0.017 24.6 10.0 107 272-395 4-115 (148)
109 2of3_A ZYG-9; multifunctional 21.9 4E+02 0.014 27.8 10.1 31 268-300 132-162 (266)
110 3ltj_A Alpharep-4; protein eng 21.0 5E+02 0.017 24.0 16.8 59 267-346 13-71 (201)
111 4gmo_A Putative uncharacterize 20.5 5.6E+02 0.019 29.7 12.1 66 466-531 64-130 (684)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.93 E-value=0.0017 Score=64.18 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=158.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
++.|...+++++ .+.|..++..|..++.-.. ..-..+++.|.++.+-..|.+++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 566777777655 5678888877777654321 234567788999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 428 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~ 428 (830)
+++.. |..+.+. ..+..|++.| .+.++.++.....+|..|..... .....+.+ ..++.|++-|..
T Consensus 74 ~~~~~-~~~~~~~---~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVDA---GGVEVLVKLL-TSTDSEVQKEAARALANIASGPD-------EAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHHT---THHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChHH-HHHHHHC---CCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHCCCHHHHHHHHcC--
Confidence 88875 5556553 2455566644 56789999999999999974211 12222333 345666554421
Q ss_pred CCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCc
Q 003320 429 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 508 (830)
Q Consensus 429 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 508 (830)
..+.+....+..|+.+...+.. .+..++..+++..++.++.+.+.-++..|++++.++.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-C
Confidence 1234566777888877765443 34567778999999999999999999999999999886 4
Q ss_pred hhHHHHHHHhhCCHHHHHHHHH
Q 003320 509 DEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 509 Defy~ryiIk~nLf~PIl~~f~ 530 (830)
+.-..+.+++.+++.+++.++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
Confidence 5557788999999999988774
No 2
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.74 E-value=0.0057 Score=65.30 Aligned_cols=203 Identities=11% Similarity=0.140 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHhCCC----------CCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHH-HHcCCCc
Q 003320 266 DSTFIQELFARLRSP----------TTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQDK 334 (830)
Q Consensus 266 d~~FL~eLF~~l~~~----------~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~-~L~~~d~ 334 (830)
+.+-|++....+.++ +.+.+.|..+..-|.++|. ++. --..+++.|.++.+-. .|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d------na~~~~~~G~l~~Lv~~lL~s~~~ 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD------NAADFCQLSGMHLLVGRYLEAGAA 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH------HHHHHHHTTHHHHHHHTTTTCSSH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh------hHHHHHHcCCHHHHHHHHHcCCCH
Confidence 456788888888887 3344566666655555543 332 1224678898888877 8999999
Q ss_pred hhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 003320 335 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 414 (830)
Q Consensus 335 ~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~ 414 (830)
.+|..|+-+|..+...+|. .|..+++.. -+..|+++|-.+.+..++...+-+|..|.-... +....|.+ .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g---~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~---~ 166 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAA-IQEQVLGLG---ALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR---L 166 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHTT---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhCCHH-HHHHHHHCC---CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHH---C
Confidence 9999999999999999998 477777643 445556655556678888888888887763211 12223333 2
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHH
Q 003320 415 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 494 (830)
Q Consensus 415 ~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~ 494 (830)
..++.|+.-|... ...+....|-.|+.++..+ -..+.++...+++..++.||.+++.-++
T Consensus 167 ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 167 DGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp THHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSCCSTHH
T ss_pred CCHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCCChhHH
Confidence 4567666655321 2244556677777776663 3456778889999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 003320 495 VAAVRFVRTILSR 507 (830)
Q Consensus 495 LaAlRFlR~iI~l 507 (830)
-.|++.+.+|+..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999976
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.42 E-value=0.019 Score=57.31 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=154.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..+..++..+.+++. +.+..++..|..+..- .. ..-+.+++.|.++.+-..|++++..++..|+.+|..+
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~----~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD----GN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH----HH----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC----CC----chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356777787776554 4667777777554332 11 2234578899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHh
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 426 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~ 426 (830)
...++.. +..+.+. -.+..|++.| .+.++.++.+...+|..|..... .+ ...+.+ ..++.|++-|..
T Consensus 82 ~~~~~~~-~~~i~~~---g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 82 ASGGNEQ-IQAVIDA---GALPALVQLL-SSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp TTSCHHH-HHHHHHT---THHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGGC
T ss_pred hcCCHHH-HHHHHHc---CCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCc----hH---HHHHHHCCCHHHHHHHHhC
Confidence 9988875 4555553 3555666644 55788999999999999854321 11 122333 355666554421
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhc
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~ 506 (830)
....+....+..|+.+..... ..+..+...+++..++.++...+..++..|++.+.++..
T Consensus 150 -------------------~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 150 -------------------PNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 122444566677776665443 334567778899999999999999999999999999885
Q ss_pred CchhHHHHHHHhhCCHHHHHHHHHH
Q 003320 507 RHDEHLINHFVKNNLLKPIVDAFVA 531 (830)
Q Consensus 507 l~Defy~ryiIk~nLf~PIl~~f~~ 531 (830)
-. +-....+++.+.+.+++.++..
T Consensus 210 ~~-~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 GG-NEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp SC-HHHHHHHHHTTHHHHHHTTTTC
T ss_pred CC-HHHHHHHHHCCcHHHHHHHhCC
Confidence 44 4466788899999999887743
No 4
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.37 E-value=0.017 Score=62.19 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=159.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
.+++.|...++++. +..-|..++..|..++.... . .-+.+++.|+++.+-..|++++..+|..|+..|..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNS----L----QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH----H----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH----H----HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57777888777652 45677888888887765321 1 124567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
...+|. .|..+++. ..+..|++.+-.+.+..++.+...+|..|.....-.. .. . +....++.|++-+..
T Consensus 135 ~~~~~~-~~~~~~~~---~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-~----~~~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 135 AGDSTM-CRDYVLDC---NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EF-A----KVSPCLNVLSWLLFV- 203 (450)
T ss_dssp HTTCHH-HHHHHHHT---TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CG-G----GTGGGHHHHHHHTTC-
T ss_pred ccCCHH-HHHHHHHC---CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CH-H----HHHHHHHHHHHHHcc-
Confidence 998877 46666653 3566677766556788999999999999984321000 01 0 124455555554321
Q ss_pred CCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 428 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 428 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
....+....+..|+.+..+..- .+..+...+++..++.++...+.-++..|++.+..+..-
T Consensus 204 ------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 204 ------------------SDTDVLADACWALSYLSDGPND-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTSSSHH-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHCCCcH-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 1235566778888887765433 344566778999999999988889999999999998765
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHH
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVA 531 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ 531 (830)
.++ ..+.++..+++.+++.++..
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTC
T ss_pred ChH-HHHHHHHCccHHHHHHHHcC
Confidence 554 56678888999988887753
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.35 E-value=0.028 Score=55.41 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=142.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..++.|...+++++ .+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 44 g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD--SEVQKEAARALANIASGP----D----EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC----h----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57888888888754 566777777776654321 1 2334567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 426 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 426 (830)
..+++.. +..+.+ ...+..|++. +.+.++.++.....+|..|.... +. ....+. ...++.|++-|..
T Consensus 114 ~~~~~~~-~~~~~~---~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~----~~---~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 114 ASGPDEA-IKAIVD---AGGVEVLVKL-LTSTDSEVQKEAARALANIASGP----DE---AIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp TTSCHHH-HHHHHH---TTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC----HH---HHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCHHH-HHHHHH---CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC----HH---HHHHHHHCcCHHHHHHHHCC
Confidence 9888875 444554 2356666654 45678899999999999886421 11 112223 3345555554421
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhc
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~ 506 (830)
..+.+....+..|+.+.. +....+..+...+++..++.++...+.-++-.|++.++++..
T Consensus 182 -------------------~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 182 -------------------TDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 123455566777777665 344456678888999999999999989999999999999887
Q ss_pred CchhHH
Q 003320 507 RHDEHL 512 (830)
Q Consensus 507 l~Defy 512 (830)
.....+
T Consensus 242 ~~~~~~ 247 (252)
T 4hxt_A 242 GGWLEH 247 (252)
T ss_dssp TCBCCC
T ss_pred CCCccc
Confidence 655433
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.27 E-value=0.059 Score=60.23 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=157.7
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 348 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii 348 (830)
.++.|...+.+++ +..-|..++..|..+|.-. ...-..+++.|.++.+-..|.+++..+|..|+-.|..|.
T Consensus 118 ~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 118 VVPRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4555555665433 2456677777776665421 123345678899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 003320 349 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 428 (830)
Q Consensus 349 ehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~ 428 (830)
..+|.. |..+... -.+..|+..|-.+.++.++...+.+|..|....... . . .....+++.|++-|..
T Consensus 189 ~~~~~~-~~~i~~~---g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~--~-~----~~~~~~l~~L~~lL~~-- 255 (528)
T 4b8j_A 189 GDSPKC-RDLVLAN---GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP--S-F----EQTRPALPALARLIHS-- 255 (528)
T ss_dssp HTCHHH-HHHHHHT---TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC--C-H----HHHTTHHHHHHHHTTC--
T ss_pred CCChhh-HHHHHHC---CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC--c-H----HHHHHHHHHHHHHHCC--
Confidence 877764 6666653 355666776656788999999999999998654211 1 1 1124455655554421
Q ss_pred CCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCc
Q 003320 429 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 508 (830)
Q Consensus 429 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 508 (830)
..+.+....|..|+.+......++ ..++..+++..++.++...+.-++..|++.+.++..-.
T Consensus 256 -----------------~~~~v~~~a~~aL~~l~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 256 -----------------NDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 134566778888888886554433 34567789999999999988999999999999998755
Q ss_pred hhHHHHHHHhhCCHHHHHHHHH
Q 003320 509 DEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 509 Defy~ryiIk~nLf~PIl~~f~ 530 (830)
+ ...+.+++.+++.+++.++.
T Consensus 318 ~-~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 318 D-AQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp H-HHHHHHHTTTHHHHHHHHHH
T ss_pred H-HHHHHHHHhhhHHHHHHHHc
Confidence 5 46677889999999998885
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.27 E-value=0.13 Score=57.45 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=161.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH-cCCCchhhhhhhHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILIL 346 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L-~~~d~~ir~~atDIL~~ 346 (830)
..++-|...+.++ +.+-|..++..|..+|.-. +. .-..++..|.++.+-..| .+.+..++..++..|..
T Consensus 160 g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~----~~----~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 160 GAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS----PK----CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC----HH----HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC----hh----hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5677788888764 4567788888888777422 22 223456789999888888 67788999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 003320 347 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 425 (830)
Q Consensus 347 iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 425 (830)
+....|......+ ...+..|++.| .+.++.++.....+|..|.+... .....+.+ ..++.|+.-|.
T Consensus 230 L~~~~~~~~~~~~-----~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 230 FCRGKPQPSFEQT-----RPALPALARLI-HSNDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHCSSSCCCHHHH-----TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCCcHHHH-----HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHHHHHHHHHc
Confidence 9988654322211 34666777655 66788999999999998875421 12223333 45666665442
Q ss_pred hcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhcc-chhHHHHHHHHHHHH
Q 003320 426 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFVRTI 504 (830)
Q Consensus 426 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~-~K~L~LaAlRFlR~i 504 (830)
.. .+.+....+..|+.++.... .....++..+++..++.++... +..++..|++.+.++
T Consensus 297 ~~-------------------~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 HP-------------------SPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp CS-------------------CHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CC-------------------ChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 21 23445566777777776433 3455677888999999999988 889999999999998
Q ss_pred hcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 505 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 505 I~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
..- +.-...+++..+++.+++.++... ...+...|+.-|-.+.
T Consensus 357 ~~~-~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 357 TAG-NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HTS-CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 864 455677899999999999998653 2234444444333333
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.14 E-value=0.079 Score=59.41 Aligned_cols=237 Identities=12% Similarity=0.132 Sum_probs=159.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~is-K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
..+..|...+.+ .+..-++.++..|..+|.-. ...+ ..+..|+++.+-..|.+.+..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457778888876 44567788888888877543 1211 23457899999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 003320 347 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 425 (830)
Q Consensus 347 iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 425 (830)
+....+..+.. ++. ..++..|+..| .+.+..++.....+|..|..... .....+.+ ..++.|+.-|.
T Consensus 284 L~~~~~~~~~~-~~~---~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VID---VRIPKRLVELL-SHESTLVQTPALRAVGNIVTGND-------LQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHH---TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTT
T ss_pred HhCCCHHHHHH-HHh---cCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCH-------HHHHHHHHcchHHHHHHHHc
Confidence 99998876544 343 23566777755 56788888888888887753211 12222332 34455444332
Q ss_pred hcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 426 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 426 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
. ....+-...|-.|+.+.......++ .++..+++..++.++...+.-++-.|+..+.++.
T Consensus 352 ~-------------------~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 S-------------------PKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C-------------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 0223444556666666654333333 4567889999999999888899999999999987
Q ss_pred cCchh--HHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 506 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 506 ~l~De--fy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
.-.+. -+.+++++.+++.+++.++... +.-+-.+++..+..|
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 65444 5788999999999999988542 233344445444443
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.05 E-value=0.049 Score=61.07 Aligned_cols=223 Identities=11% Similarity=0.079 Sum_probs=155.0
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..++.|...+.++. +..-|..++..|..++... +. .-..+++.|.++.+-..|.+++..+|..|+..|..+
T Consensus 130 g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~----~~----~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l 200 (530)
T 1wa5_B 130 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGT----SA----QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 200 (530)
T ss_dssp TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC----HH----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34555666665542 3456777777666655421 11 224567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
...+|.. |..+... ..+..|++.+ .+.+..++...+.+|..|.....-. .. + ......++.|+.-|..
T Consensus 201 ~~~~~~~-~~~~~~~---~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~---~~-~--~~~~~~l~~L~~lL~~- 268 (530)
T 1wa5_B 201 AGDSTDY-RDYVLQC---NAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ---PD-W--SVVSQALPTLAKLIYS- 268 (530)
T ss_dssp HTTCHHH-HHHHHHT---TCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSC---CC-H--HHHGGGHHHHHHHTTC-
T ss_pred hCCCccc-hHHHHHc---CcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCC---Cc-H--HHHHhHHHHHHHHHcC-
Confidence 9888774 6666653 3566666655 4578899999999999998643111 11 1 1224455666553311
Q ss_pred CCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 428 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 428 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
..+.+....|..|+.++....-. ...++..+++..++.++...+.-++..|++.+..+..-
T Consensus 269 ------------------~d~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 269 ------------------MDTETLVDACWAISYLSDGPQEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHSSCHHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHhCCCHHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 12456677788888887655433 34466778999999999988889999999999998865
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHH
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVA 531 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ 531 (830)
.++ ..+.++..+++.+++.++..
T Consensus 330 ~~~-~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 330 NDL-QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp CHH-HHHHHHHTTHHHHHHHHTTC
T ss_pred CHH-HHHHHHHcchHHHHHHHHcC
Confidence 554 56677888999998887753
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.84 E-value=0.35 Score=54.57 Aligned_cols=241 Identities=14% Similarity=0.123 Sum_probs=156.0
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHH
Q 003320 269 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 345 (830)
Q Consensus 269 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~ 345 (830)
.+.-|...+..+..+ ..-.+.++..|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH--------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH--------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 456666777655433 233555665555555432222221 112467888889999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHH
Q 003320 346 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVI 424 (830)
Q Consensus 346 ~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL 424 (830)
++.++++.... .+.. .-.+..|++.| .+.+..++.....+|..|.-... ..+. ...+ ..++.|+.-|
T Consensus 277 ~l~~~~~~~~~-~v~~---~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~---~~~~----~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 277 YLTDGPNERIE-MVVK---KGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTD---EQTQ----KVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHSSCHHHHH-HHHT---TTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCH---HHHH----HHHHTTGGGGHHHHT
T ss_pred HhhhhhhhhHH-HHHh---ccchHHHHHHh-cCCChhHHHHHHHHHHHHHccch---HHHH----HHhhcccHHHHHHHH
Confidence 99998887543 3333 23455566644 56788888888888877753211 1111 1222 2233333322
Q ss_pred HhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHH
Q 003320 425 TASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 504 (830)
Q Consensus 425 ~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~i 504 (830)
.. ....+-...|-.|+.+..+.. ..+..++..+++..++.++.+.+.-++-.|...+.++
T Consensus 345 ~~-------------------~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 345 TN-------------------PKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY 404 (529)
T ss_dssp TC-------------------SSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cC-------------------CCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11 122333455556665555433 3455677889999999999999999999999999998
Q ss_pred hcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 003320 505 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 505 I~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 552 (830)
..-.+.-..+||++.|.+.|+++++.. .|.=+-..+|+-++.|.+
T Consensus 405 ~~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 405 TSGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 877777788999999999999998853 344455567777777653
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.74 E-value=0.24 Score=47.83 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=134.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
-.-|...+.++ +.+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..|+-.|..+..
T Consensus 14 ~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~----~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 14 LPQMVQQLNSP--DQQELQSALRKLSQIASGG----N----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSC----H----HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhcCC--CHHHHHHHHHHHHHHHcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33445555543 4567788888887766322 1 223467788999999999999999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcC
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASC 428 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~~~ 428 (830)
+++.. +..+++.. .+..|++.| .+.++.++.....+|..|.... + .....+. ...++.|++-|..
T Consensus 84 ~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~-- 149 (210)
T 4db6_A 84 GGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS-- 149 (210)
T ss_dssp SCHHH-HHHHHHTT---CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CCcHH-HHHHHHCC---CHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCC----H---HHHHHHHHcCcHHHHHHHHcC--
Confidence 88875 44555532 455566644 6668999999999999886421 1 1122222 2345666554421
Q ss_pred CCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 429 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 429 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
....+....+..|+.++... ...+..+...+++..+..++...+.-++-.|+.+++++.
T Consensus 150 -----------------~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 -----------------PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 12345567777777777643 345677888899999999999988899999999998864
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.73 E-value=0.23 Score=48.00 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=127.6
Q ss_pred HHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 315 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 315 ~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
.....|..+.+...|.++|..++..|+-.|..+..+++... ..+.+. -.+..|++.| .+.++.++.+...+|..|
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~---g~i~~L~~lL-~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQI-QAVIDA---GALPALVQLL-SSPNEQILQEALWALSNI 81 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH-HHHHHT---THHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHc---CCHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999998888864 444442 3566666654 556889999988898888
Q ss_pred cCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhH
Q 003320 395 LDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 473 (830)
Q Consensus 395 LDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i 473 (830)
.... +.....+++ ..++.|+.-|.. ..+.+....+-.|+.+..+.. ..+..+
T Consensus 82 ~~~~-------~~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 134 (210)
T 4db6_A 82 ASGG-------NEQIQAVIDAGALPALVQLLSS-------------------PNEQILQEALWALSNIASGGN-EQIQAV 134 (210)
T ss_dssp TTSC-------HHHHHHHHHTTCHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHH
T ss_pred hcCC-------cHHHHHHHHCCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHHHcCCH-HHHHHH
Confidence 5211 112233333 345666654422 123444556666666665333 334557
Q ss_pred hhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHH
Q 003320 474 LLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 474 l~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~ 530 (830)
+..+++..++.++...+.-++..|+..+.++..-.++ ....+++.+.+.+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 7889999999999998999999999999999875444 5678889999999998775
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.72 E-value=0.27 Score=52.86 Aligned_cols=202 Identities=10% Similarity=0.038 Sum_probs=137.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..++-|...++++ +.+-+..++..|..+|... + .....++..|+++.+-..|.+++..+|..++..|..+
T Consensus 192 ~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 192 PCLNVLSWLLFVS--DTDVLADACWALSYLSDGP----N----DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSS----H----HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCC----c----HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4677777777654 3456777777777665421 1 1234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 426 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 426 (830)
..+++...+ .+.. ...+..|++.| .+.++.++.....+|..|.... ......+. ...++.|+.-|.+
T Consensus 262 ~~~~~~~~~-~~~~---~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQ-VILN---CSALQSLLHLL-SSPKESIKKEACWTISNITAGN-------RAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHH-HHHT---TTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHH-HHHH---CccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhc
Confidence 999887543 3443 23666777655 5568888888888887775311 11222233 2456666666543
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhc
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~ 506 (830)
. .+.+-...|-.|+.++...+.....+++..+++..++.++...+.-++..|+..+.+++.
T Consensus 330 ~-------------------~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 330 A-------------------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 123444556667766666443334456678899999999999888999999999999887
Q ss_pred Cchh
Q 003320 507 RHDE 510 (830)
Q Consensus 507 l~De 510 (830)
..+.
T Consensus 391 ~~~~ 394 (450)
T 2jdq_A 391 LGEQ 394 (450)
T ss_dssp HHHH
T ss_pred hchh
Confidence 5544
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.67 E-value=0.081 Score=59.85 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=130.3
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 389 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 389 (830)
+.+++.|.++.+-..|.+++..++..|+-.|..|..++|.. |..+.+... +..|+..|-.. ...++...++.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~-r~~i~~~g~---i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-RDLVIKHGA---IDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTC---HHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH-HHHHHHcCC---cHHHHHHHhccchhHhHHHHHHHHHH
Confidence 46789999999999999999999999999999999888884 877777543 33444444322 22345556666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcch
Q 003320 390 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 469 (830)
Q Consensus 390 aLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 469 (830)
+|..|.-....... +. .-...++.|++-|.. ..+++....|-.|+++..++..+
T Consensus 232 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~~-------------------~~~~v~~~a~~aL~~l~~~~~~~- 285 (529)
T 3tpo_A 232 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLHH-------------------NDPEVLADSCWAISYLTDGPNER- 285 (529)
T ss_dssp HHHHHHCCCTTCCC----HH--HHHHHHHHHHHHTTS-------------------SCHHHHHHHHHHHHHHHSSCHHH-
T ss_pred HHHHHHhcccchhh----HH--HHhhHHHHHHHHhcC-------------------CcHHHHHHHHHHHHHhhhhhhhh-
Confidence 66666532211100 00 112344444443311 23456677888888888766554
Q ss_pred hhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHH
Q 003320 470 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 470 K~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~ 530 (830)
+..+....++.++..|+.+.+..++..|+|.+.+++...|+ ....++..+.+.+++.++.
T Consensus 286 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGHHHHTT
T ss_pred HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH-HHHHHhhcccHHHHHHHHc
Confidence 34567788999999999999999999999999999866554 7788999999999888764
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.65 E-value=0.29 Score=48.61 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=138.0
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..++.|...+++++ .+-|..++..|..++.-. +. .-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 54 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~----~~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPN--EQILQEALWALSNIASGG----NE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 57888999888765 567778887777665321 12 224567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 426 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 426 (830)
...++.... .+.+ .-.+..|++.| .+.++.++.....+|..|..... .....+. ...++.|++-|..
T Consensus 124 ~~~~~~~~~-~~~~---~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 124 ASGGNEQIQ-AVID---AGALPALVQLL-SSPNEQILQEALWALSNIASGGN-------EQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp TTSCHHHHH-HHHH---TTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTCHHHHHHGGGC
T ss_pred hcCCchHHH-HHHH---CCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCh-------HHHHHHHHCCCHHHHHHHHCC
Confidence 988876433 3444 23566777655 66788999999999998864321 1222222 3345666554421
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
..+.+....+..|+-++..+ ...+..++..+++..++.++...+.-++-.|++.+.++.
T Consensus 192 -------------------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 -------------------PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 12345566777777776543 344566778889999999999988899999998887753
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.54 E-value=0.5 Score=53.26 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=154.3
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHH
Q 003320 269 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 345 (830)
Q Consensus 269 FL~eLF~~l~~~~~~---~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~ 345 (830)
.+.-|...+..++.+ ..-++.+...|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455566666655432 233555665555555422222211 112467888889999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 003320 346 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 425 (830)
Q Consensus 346 ~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~ 425 (830)
.+.++++.... .+.. .-.+..|++.| ...+..++.....+|..|.-.. ...+..++ +.. .+.+|.
T Consensus 258 ~L~~~~~~~~~-~i~~---~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~----~~g---~l~~L~ 322 (510)
T 3ul1_B 258 YLTDGPNERIE-MVVK---KGVVPQLVKLL-GATELPIVTPALRAIGNIVTGT---DEQTQKVI----DAG---ALAVFP 322 (510)
T ss_dssp HHTSSCHHHHH-HHHT---TTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH----HTT---GGGGCC
T ss_pred HHhhchhhhHH-HHHh---cccchhhhhhh-cCCChhhhhHHHHHHHHhhcCC---HHHHHHHh----hcc---chHHHH
Confidence 99998887543 3333 23455666644 5567778777777777664221 11111111 111 011111
Q ss_pred hcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 426 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 426 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
.. .......+-...|-.|+.+..... ..+..++..+++..++.++.+.+.-++-.|...+.++.
T Consensus 323 ~L---------------L~~~~~~v~~~A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 323 SL---------------LTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp -C---------------TTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HH---------------hcCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 10 011234455566666766665433 34567788899999999999999999999999999998
Q ss_pred cCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 003320 506 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 506 ~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 552 (830)
.-.+.-..+||++.+.+.|+++++.. .|.=+-..+|+.++.|-+
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 87777789999999999999998853 344455677777776643
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.21 E-value=0.086 Score=59.48 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=125.7
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 389 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 389 (830)
+.+++.|.++.+-..|++++..++..|+-.|..|..++|.. |..+.+... +..|+..+-.. ...++...+..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~-r~~v~~~G~---i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-RDLVIKHGA---IDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTC---HHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHcCC---hHHHHHHHHhccchhhhHHHHHHHHH
Confidence 35788999999999999999999999999999999888874 777776443 33344444322 22345555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcch
Q 003320 390 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 469 (830)
Q Consensus 390 aLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 469 (830)
+|..+.-....... +. .....++.|++-|.. ...++....|-.|+++..+...++
T Consensus 213 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~~-------------------~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 213 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLHH-------------------NDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHHCCCSSCCC----HH--HHHHHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhcccchhH----HH--HHHhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHHhhchhhhH
Confidence 66666532211110 10 112334444442211 234566778888888887665543
Q ss_pred hhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHH
Q 003320 470 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 529 (830)
Q Consensus 470 K~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f 529 (830)
..+....++.+++.++.+.+.-++..|+|.+.++....|+ ....++..+.+.+++.++
T Consensus 268 -~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 268 -EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp -HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGCC-CT
T ss_pred -HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH-HHHHHhhccchHHHHHHh
Confidence 4567788999999999999999999999999998876554 678889999988876655
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.99 E-value=2.4 Score=46.59 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=154.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..++.|...+++++ ..-+..++..|..+|.-..+. | ..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 101 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~----~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 101 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA----K----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTH----H----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcch----H----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56777888887654 567888888888887653221 2 2456789999999999999999999999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
...++.. +..+.+.. -+..|++.|-......++.....+|+.|-.... .+..++ +.. .+.+|...
T Consensus 171 a~~~~~~-~~~i~~~~---~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~----~~g---~~~~L~~l 235 (529)
T 1jdh_A 171 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EAG---GMQALGLH 235 (529)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHH----HTT---HHHHHHTT
T ss_pred HhCCHHH-HHHHHHCC---CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HCC---CHHHHHHH
Confidence 7767764 44454432 355666666555556666667777877754221 222222 221 23444332
Q ss_pred CCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 428 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 428 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
... ....+..+.+..|+.+....... ....+++..++.++++.+.-++..|.+.+.++..-
T Consensus 236 l~~---------------~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 236 LTD---------------PSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTS---------------SCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhC---------------CChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 110 12344555666666666554322 22347888899999999999999999999998554
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHH
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 546 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LEl 546 (830)
+.-....+++.+.+.+++.++....+...+...|+--|
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 44467788899999999999987655445555554433
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.74 E-value=0.79 Score=52.92 Aligned_cols=238 Identities=15% Similarity=0.120 Sum_probs=147.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..+..|...+.++ +..-++.++..|..+|.-..... ...|+++.+-..|.+.+..++..++-+|..+
T Consensus 224 g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 224 GGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp THHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566666666654 45667778888888775443211 1126788888889999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCC-hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG-EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 426 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d-~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~ 426 (830)
..+++.. |..+.+.. .+..|++.|....+ +.++.....+|..|.....-....+..++. ...++.|++-|..
T Consensus 291 ~~~~~~~-~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~---~~~l~~L~~lL~~ 363 (644)
T 2z6h_A 291 TCNNYKN-KMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL---HYGLPVVVKLLHP 363 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH---TTHHHHHHHTTST
T ss_pred HcCCHHH-HHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---ccChHHHHHHhCc
Confidence 9988764 55555522 56677777766443 788888888998885321100000111111 1234444332211
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhcc-----------------
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR----------------- 489 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~----------------- 489 (830)
. ....+....|..|+-+...-..+ ..++..+++..++.++...
T Consensus 364 ~------------------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 364 P------------------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp T------------------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred c------------------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 0 01234445556666655543333 5677888999988887653
Q ss_pred -----chhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 003320 490 -----EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 549 (830)
Q Consensus 490 -----~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 549 (830)
...++.+|++.++++.. +......+.+.+.+.|+++++.. ...|+...|+--|-..
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 484 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 23567789999998774 33445567799999999998853 3345666665444443
No 20
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.60 E-value=1.7 Score=51.54 Aligned_cols=223 Identities=10% Similarity=0.111 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhc---------------------c---ChHhHHHHHHHHHh---
Q 003320 266 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS---------------------L---QMVQQLRLFRDLMN--- 318 (830)
Q Consensus 266 d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~---------------------L---Q~~~R~~lf~~Lv~--- 318 (830)
-+.+++.|+..+.+++ ...|..++..|..+|.-... + .+.-|..-.+.|..
T Consensus 126 wp~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp CTTHHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3568888888887653 34566666666666643211 0 11223333333321
Q ss_pred ----------cCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHH
Q 003320 319 ----------EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFL 388 (830)
Q Consensus 319 ----------~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~ 388 (830)
.++++.+-..+.+++..+|..++..|..+++..|..++.|+-. ++..+++. +.+.++.++.+..
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~-----l~~~l~~~-~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN-----IVEYMLQR-TQDQDENVALEAC 277 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH-----HHHHHHHH-HTCSSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH-----HHHHHHHH-ccCCcHHHHHHHH
Confidence 1355566666778888999999999999999998877766532 66666654 4577889999999
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH---------hcCCCcccccccC-CCCccccCcHHHHHHHHHHH
Q 003320 389 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT---------ASCPQEGIAQSAS-SGGRVESTKPEILSNICELL 458 (830)
Q Consensus 389 eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~---------~~~p~~~~~~~~~-~~~~~~~~~~~ll~~l~ELL 458 (830)
+.+..+.+...+ + .++.-++...++.|+.-+. ...+.+....+.. ....++......+..+.+.
T Consensus 278 e~l~~l~~~~~~----~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~- 351 (852)
T 4fdd_A 278 EFWLTLAEQPIC----K-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV- 351 (852)
T ss_dssp HHHHHHTTSTTH----H-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcchhH----H-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh-
Confidence 999888765421 1 1232333333444433321 0111111000000 1112222222233333332
Q ss_pred HHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHH
Q 003320 459 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLI 513 (830)
Q Consensus 459 ~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ 513 (830)
... .++ ..++..+..++.+.+-..+-+|++.+.++..--.+.+.
T Consensus 352 ---~~~-------~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 352 ---YRD-------ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp ---HGG-------GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred ---ccH-------HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH
Confidence 211 122 34667777778888888999999999998876555443
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.57 E-value=2.7 Score=48.42 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=157.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
..+..|...+.+++ ..-|..++.-|..+|.-.. . ....+++.|.++.+-..|++.+..++..++..|..+
T Consensus 98 g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 56788888887653 5678888888888776431 1 223566899999999999999988899999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 003320 348 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 427 (830)
Q Consensus 348 iehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 427 (830)
...++.. |..+.... .+..|++.|-......++.....+|+.|-.... .+..++ +.. .+.+|...
T Consensus 168 a~~~~~~-~~~i~~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~----~~g---~l~~L~~l 232 (644)
T 2z6h_A 168 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EAG---GMQALGLH 232 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHH----HTT---HHHHHHTT
T ss_pred HhcCcHH-HHHHHHcC---ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HCC---CHHHHHHH
Confidence 8666654 44455432 355667766555555666777788888864221 233232 221 23334332
Q ss_pred CCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 428 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 428 ~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
.. .....+....+..|..+.++... ......++..+++++++.+.-++..|...+.++..-
T Consensus 233 l~---------------~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 233 LT---------------DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TT---------------CSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hh---------------cCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 10 01234556667777777655432 223347888899999999889999999999988654
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFE 548 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfe 548 (830)
+.-..+.+++.+.+.+++.++...+.+..+...|+.-|-.
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 4446778889999999999998776555666555554433
No 22
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=95.24 E-value=0.015 Score=55.46 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=59.0
Q ss_pred cccceeEEEecCCCcceeEeecCCCchhhhc--cCceeEeccC-----C-ccccccccccCccchhHHHHHHHHHhh
Q 003320 4 SEELCLFVIDEEDNETILLHRISPDDIYRKQ--EDTIISWRDP-----E-YSTELALSFQEPTGCSYIWDNICNVQR 72 (830)
Q Consensus 4 ~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQ--qeTLIvWte~-----~-~g~DlALSFQe~~GC~~IWe~I~~VQ~ 72 (830)
....+|++|.+..+.++|.+.|.++-.|+.+ .+..++|+-. + ...-+||.|..++.|+++|+.|.+.|.
T Consensus 57 ~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 57 SGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp SCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999986 4689999732 1 125799999999999999999999874
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.03 E-value=3.4 Score=49.09 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 449 EILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 449 ~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
.+-...|+.|.-++..++..++.|+ ..++.-++.++...+.-++..|+.|+.++...
T Consensus 230 ~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 230 EVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 4445667777777777766666654 35777788888888889999999999997654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.96 E-value=6.5 Score=46.86 Aligned_cols=257 Identities=11% Similarity=0.104 Sum_probs=147.3
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHH
Q 003320 265 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 344 (830)
Q Consensus 265 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL 344 (830)
..+..+..|...+++.. +.+-|+.++..|..++. . ...+ ..+++.|.++.+-..|++.+..++..|+..|
T Consensus 189 ~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~---~--~~~~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 258 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSH---H--REGL----LAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258 (780)
T ss_dssp TCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT---S--HHHH----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC---C--chhH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34578888888887442 56778888888887443 2 1222 3456779999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 003320 345 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 424 (830)
Q Consensus 345 ~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 424 (830)
..|...++.. |..+.+. -.+..|++.|- +.+..++....++|+.|--.. ...+..+.. ...++.|++-|
T Consensus 259 ~nLa~~~~~~-~~~v~~~---g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~---~e~~~~i~~---~~~i~~Lv~lL 327 (780)
T 2z6g_A 259 HNLLLHQEGA-KMAVRLA---GGLQKMVALLN-KTNVKFLAITTDCLQILAYGN---QESKLIILA---SGGPQALVNIM 327 (780)
T ss_dssp HHHHHHSTTH-HHHHHHT---THHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTC---HHHHHHHHT---TTHHHHHHHHH
T ss_pred HHHhCCChhh-HHHHHHc---CCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC---hHHHHHHHH---cCCHHHHHHHH
Confidence 9998887664 4444432 25666776554 466777777778888775211 012222221 13455555544
Q ss_pred HhcCCCcccccccC----CCCccccCcHHHH-HHHHHHHHHHHhhCCcchh---------------hhHhhchHHHHHHH
Q 003320 425 TASCPQEGIAQSAS----SGGRVESTKPEIL-SNICELLCFCVLHHPYRIK---------------CNFLLNNVVDKVLL 484 (830)
Q Consensus 425 ~~~~p~~~~~~~~~----~~~~~~~~~~~ll-~~l~ELL~Fcv~~H~yriK---------------~~il~~nll~kVl~ 484 (830)
....+. ....... .-.........+. ..++..|.-+........+ .......++..++.
T Consensus 328 ~~~~~~-~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 328 RTYTYE-KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406 (780)
T ss_dssp TTCCCH-HHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred hcCCHH-HHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Confidence 321100 0000000 0000000001110 1112222222222221111 11112346677778
Q ss_pred hhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHH
Q 003320 485 LTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 544 (830)
Q Consensus 485 Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~L 544 (830)
++++.+.-++..|++.+.++..-.+ -..+.+++.+.+.+++.++...++...+...|+.
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888888899999998865544 4567788899999999999876554344444433
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.71 E-value=1 Score=49.43 Aligned_cols=184 Identities=11% Similarity=0.119 Sum_probs=127.0
Q ss_pred HHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 316 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 316 Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
.+..|.++.+-..|++++..+|..|+..|..+..+++. |..++.. ...+..|++.|-...++.++.....+|+.|-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~--~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRS--PQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhC--cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887764 3334432 1255667777766668888888888988874
Q ss_pred CCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHh
Q 003320 396 DSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL 474 (830)
Q Consensus 396 Dp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il 474 (830)
... +....+.+ ..++.|++-|.. ..+.+....+..|..+...+.. .+..+.
T Consensus 89 ~~~--------~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~i~ 140 (529)
T 1jdh_A 89 HHR--------EGLLAIFKSGGIPALVKMLGS-------------------PVDSVLFYAITTLHNLLLHQEG-AKMAVR 140 (529)
T ss_dssp TSH--------HHHHHHHHTTHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred cCc--------hhHHHHHHcCCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHHhcCCcc-hHHHHH
Confidence 321 12222333 345666554421 1234556677777777766543 366777
Q ss_pred hchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHh
Q 003320 475 LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN 532 (830)
Q Consensus 475 ~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~n 532 (830)
..+.+..++.++...+.-++-.|.+.++.+.. .++-....+++.+.+.+++.++...
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 88899999999998877777788888887654 4455777888899999999988654
No 26
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.62 E-value=0.55 Score=55.29 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=121.4
Q ss_pred HHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 003320 314 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 393 (830)
Q Consensus 314 ~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 393 (830)
.++.+..++++|+. |+++|...|..|+-.|..|++ ||+. |..+.+ ..++..++..+++|.+..++.+.+++||.
T Consensus 29 ~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~-~~l~~~---~~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 29 AKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKC-RKLLLR---EQVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHH-HHHHHH---TTHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHH-HHHHHH---cCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45667789999987 899999999999999999995 8987 444555 33666677888999999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccc----cCcHHHHHHHHHHHHHHHhhCCcc
Q 003320 394 LLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVE----STKPEILSNICELLCFCVLHHPYR 468 (830)
Q Consensus 394 LLDp~~m~~~e~d~fL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~----~~~~~ll~~l~ELL~Fcv~~H~yr 468 (830)
|---+ ..+++.+.|.+- +.-|..-|..... ............. ..-..+..+++-+|.. ..+++-.
T Consensus 103 L~~~~------g~d~~~~l~~~~il~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~-L~e~s~~ 173 (684)
T 4gmo_A 103 LAQEE------EADFCVHLYRLDVLTAIEHAAKAVLE--TLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGL-LALARDE 173 (684)
T ss_dssp HHHHS------CHHHHHHHHHTTHHHHHHHHHHHHHH--HHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHH-HHHHCHH
T ss_pred HHhhc------CchHHHHHHHcChHHHHHHHHHhhHH--HHhhhccccccccHHHHHHHHHHHHHHHHHHHH-HHhCCHH
Confidence 85222 224566666553 3333322211000 0000000000000 0011233455666544 3355656
Q ss_pred hhhhHhhchHHHHHHHhhhccch---hHHHHHHHHHHHHhcCchhHHHHHHHhhC
Q 003320 469 IKCNFLLNNVVDKVLLLTRRREK---YLVVAAVRFVRTILSRHDEHLINHFVKNN 520 (830)
Q Consensus 469 iK~~il~~nll~kVl~Ll~~~~K---~L~LaAlRFlR~iI~l~Defy~ryiIk~n 520 (830)
+...|...+.+..++.++...++ -++.+|++|+.++..-++++. +.+..++
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 66678888888888877654443 488999999999988888764 4555444
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.18 E-value=3.5 Score=43.99 Aligned_cols=210 Identities=8% Similarity=0.073 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhccChHhHHHHHHHHHh----------------
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKSLQMVQQLRLFRDLMN---------------- 318 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~i------------sK~LQ~~~R~~lf~~Lv~---------------- 318 (830)
+.|+..|+.++.+.+.+..-|.-+...|+.+..- -..+....|..+-..|+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i 113 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHH
Confidence 5677777777776555566666666677776521 123444444333222211
Q ss_pred -------------cCcHHHHHHHHcCC--CchhhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccC-Ch
Q 003320 319 -------------EGIFDIVTDALQSQ--DKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDF-GE 381 (830)
Q Consensus 319 -------------~GL~~vi~~~L~~~--d~~ir~~atDIL~~iiehd-PslvR~~i~~qe~~~Ll~~Li~~ll~d~-d~ 381 (830)
.++++.+-..+.++ +..+|..|..+|..+++.- |..+..++ ..++..+...|-.+. ++
T Consensus 114 ~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-----NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-----HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-----HHHHHHHHHHhCCCCCCH
Confidence 13555555555555 6666666666666665532 33211111 125555555443332 67
Q ss_pred hHHHHHHHHHHHhcCCCCCCch-hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHH
Q 003320 382 DMHCQFLEILRSLLDSYTLSGA-QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 460 (830)
Q Consensus 382 glk~Ql~eaLk~LLDp~~m~~~-e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 460 (830)
.++.....++..++.- +... ....+. . .++..+..... .....+-..+|+.|.-
T Consensus 189 ~vr~~a~~~l~~~~~~--~~~~~~~~~~~-----~---~l~~~l~~~~~---------------~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 189 NVKLAATNALLNSLEF--TKANFDKESER-----H---FIMQVVCEATQ---------------CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHTSHHHH-----H---HHHHHHHHHTT---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhHHH-----H---HHHHHHHHhcC---------------CCCHHHHHHHHHHHHH
Confidence 7887777777776532 1000 001111 1 12222222100 0123455567888888
Q ss_pred HHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 461 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 461 cv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
++..+...++.|+-. .++.-++..++..+.-++..|+.|+.++...
T Consensus 244 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 888877666666543 7777777778888888999999999888754
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.80 E-value=2.3 Score=50.73 Aligned_cols=211 Identities=12% Similarity=0.152 Sum_probs=132.6
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+..+...+.+++ .+.|+-++.+|+- ..+ ..+..|.++.+-..|.+.+..+|..|+..|..+..
T Consensus 117 i~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 117 HPTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ---------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 455666666654 3456666655541 122 23447889999889999999999999999999888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 428 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~ 428 (830)
+++. +..+.. ....+..|++.|-.+.++.++...+.+|+.|--.. .....+.+ ..++.|++-|..
T Consensus 180 ~~~~--~~~i~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--------~~~~~i~~~g~I~~Lv~lL~~-- 245 (780)
T 2z6g_A 180 KEAS--RHAIMR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--------EGLLAIFKSGGIPALVNMLGS-- 245 (780)
T ss_dssp SHHH--HHHHTT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChh--HHHHHh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--------hhHHHHHHcCCHHHHHHHHcC--
Confidence 7654 222322 12367778888876678888888888888864221 11222222 345555554421
Q ss_pred CCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCc
Q 003320 429 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 508 (830)
Q Consensus 429 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 508 (830)
..+.+....+..|..+...+. ..+..+...+++..++.++...+.-++-.|+.+++.+. ..
T Consensus 246 -----------------~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La-~~ 306 (780)
T 2z6g_A 246 -----------------PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA-YG 306 (780)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-cC
Confidence 023445566666666666543 45667778899999999998877666677778888544 44
Q ss_pred hhHHHHHHHhhCCHHHHHHHHH
Q 003320 509 DEHLINHFVKNNLLKPIVDAFV 530 (830)
Q Consensus 509 Defy~ryiIk~nLf~PIl~~f~ 530 (830)
++-....++..+.+.+++.++.
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~ 328 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMR 328 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCHHHHHHHHh
Confidence 4446667788888888888775
No 29
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.56 E-value=1.1 Score=47.00 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=104.3
Q ss_pred hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 003320 318 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 397 (830)
Q Consensus 318 ~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 397 (830)
..+.|.++...|.+.|..++..|.=+|=-++..=|..+|.-.++ -+|.-+|+.+ .+.|..+..-.+.+|++||..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e----~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE----RHLDVFINAL-SQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH----HHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH----HHHHHHHHHH-hccchhHHHHHHHHHHHHHcC
Confidence 34467777888888888888887777766676655555554444 2777777765 788999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhch
Q 003320 398 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 477 (830)
Q Consensus 398 ~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 477 (830)
..++.. =|.+.++.|..-+.. ...-+..++.|.|.=. |.--....
T Consensus 106 vpL~~~--------~y~Kl~~aL~dlik~-------------------~~~il~~eaae~Lgkl--------kv~~~~~~ 150 (265)
T 3b2a_A 106 VPMGSK--------TFLKAAKTLVSLLES-------------------PDDMMRIETIDVLSKL--------QPLEDSKL 150 (265)
T ss_dssp CCBCHH--------HHHHHHHHHHHHTTS-------------------CCHHHHHHHHHHHHHC--------CBSCCCHH
T ss_pred CCCCHH--------HHHHHHHHHHHHhcC-------------------CCchHHHHHHHHhCcC--------CcccchHH
Confidence 887532 144445554443321 1122445666666544 11222345
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHhcCc
Q 003320 478 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 508 (830)
Q Consensus 478 ll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~ 508 (830)
+...+..|+.+++..++.+|+|++-.+-+..
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 7778889999999999999999999998754
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.41 E-value=3.8 Score=40.86 Aligned_cols=193 Identities=9% Similarity=0.149 Sum_probs=124.4
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCchhhhhhhHHHHHHHhcC
Q 003320 273 LFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQD 351 (830)
Q Consensus 273 LF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~-~~d~~ir~~atDIL~~iiehd 351 (830)
++..+.+ .+-..|+.++.-|..++.-...+.... |. .+++++...|. +.+..+|..|+..|..+...=
T Consensus 20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5556654 345788999988888877632222111 11 24566777884 999999999999998887432
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCc
Q 003320 352 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 431 (830)
Q Consensus 352 PslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~ 431 (830)
...+..|+. .++..|++.+ .|....++....++|..++...+ ++.+++.|..-|..
T Consensus 89 ~~~~~~~~~-----~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~----- 144 (242)
T 2qk2_A 89 AKRFSNYAS-----ACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSN----- 144 (242)
T ss_dssp GGGGHHHHH-----HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTC-----
T ss_pred hhhHHHHHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcC-----
Confidence 222233332 2666666654 67888999999999999976432 23344444333211
Q ss_pred ccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcc--hhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhc-Cc
Q 003320 432 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR--IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS-RH 508 (830)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr--iK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~-l~ 508 (830)
..+.+-..++.+|.-|+..|... ...|+ ..++..+..++..++.-++-+|..++-.+.. ..
T Consensus 145 --------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 145 --------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp --------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 12345567788888888887532 33333 4788888899988888899999999888642 34
Q ss_pred hhHHHHHH
Q 003320 509 DEHLINHF 516 (830)
Q Consensus 509 Defy~ryi 516 (830)
++.+..|+
T Consensus 209 ~~~~~~~l 216 (242)
T 2qk2_A 209 DKAVTPLL 216 (242)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHHH
Confidence 55555554
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.08 E-value=3.2 Score=44.34 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK-~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
.+++-+...+.+++.+..-|..++.-|..++.+.+ +.... .+..+ +++++...+.+.+..+|..++.+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45566666777664456677778877766554332 11111 12222 46667677888999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-------------CCc-hhhhHHHHHH
Q 003320 347 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-------------LSG-AQRDTIIEIF 412 (830)
Q Consensus 347 iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-------------m~~-~e~d~fL~~F 412 (830)
+++..|..++.|+.+ .++..++..+ .+.++.++.+.++.+..+.+... ... ...-.++..+
T Consensus 244 l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP----ALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHCGGGCTTTTTT----THHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 999888766654421 4666655544 67888999888888877764320 000 0011233334
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchh
Q 003320 413 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 492 (830)
Q Consensus 413 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~ 492 (830)
....++.|++-+.... +.. . .....++ ...++.|..++..-. + .+ ...++..+...+...+-.
T Consensus 319 ~~~l~p~l~~~l~~~d--~d~--~-~~~~~~r-------~~a~~~L~~l~~~~~---~-~~-~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQD--END--D-DDDWNPC-------KAAGVCLMLLATCCE---D-DI-VPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp HHHHHHHHHHHTTCCC--SSC--C-TTCCSHH-------HHHHHHHHHHHHHTT---T-TH-HHHHHHHHHHHTTCSSHH
T ss_pred hhhccHHHHHHHHhcc--ccc--c-cccchHH-------HHHHHHHHHHHHhcc---H-HH-HHHHHHHHHHHhcCCChH
Confidence 4444454444332210 000 0 0111122 122333333333322 1 12 235667777788888888
Q ss_pred HHHHHHHHHHHHhcC
Q 003320 493 LVVAAVRFVRTILSR 507 (830)
Q Consensus 493 L~LaAlRFlR~iI~l 507 (830)
.+-+|+.++..+..-
T Consensus 382 ~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 382 YRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 32
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.87 E-value=9.9 Score=41.20 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=136.5
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc-ChHHHHHHHH
Q 003320 284 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 360 (830)
Q Consensus 284 ~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh-dPslvR~~i~ 360 (830)
..-|+.++.-|..+|.-. .. .+..+ ..|.++.+-..|.+++..++..|+-.|..+... ++. .|..+.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~----~~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~ 167 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD----VA-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 167 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC----HH-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----HH-----HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHH
Confidence 455777777777665321 11 23333 468889999999999999999999999988876 444 466666
Q ss_pred hcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 003320 361 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 440 (830)
Q Consensus 361 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~ 440 (830)
+.. -+..|++.|....+.+++.....+|..|--- ....|..+.. -...++.|++-|....+.
T Consensus 168 ~~G---~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~---------- 229 (354)
T 3nmw_A 168 EVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT---------- 229 (354)
T ss_dssp HTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT---CHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HCC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---ChhhhHHHHH--hcCcHHHHHHHhccCCCc----------
Confidence 522 4566777777777888888888888777320 1112222221 235677777766432110
Q ss_pred CccccCcHHHHHHHHHHHHHHHhh--CCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHh
Q 003320 441 GRVESTKPEILSNICELLCFCVLH--HPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVK 518 (830)
Q Consensus 441 ~~~~~~~~~ll~~l~ELL~Fcv~~--H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk 518 (830)
. ..++....+=.|..+..+ -.-..+..+...+.+..++.||++...-++-.|++.++++... +.-....|++
T Consensus 230 ~-----~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~ 303 (354)
T 3nmw_A 230 N-----TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD 303 (354)
T ss_dssp S-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred c-----cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 0 001222222222222210 0112356678888999999999988888999999999998754 4457889999
Q ss_pred hCCHHHHHHHHH
Q 003320 519 NNLLKPIVDAFV 530 (830)
Q Consensus 519 ~nLf~PIl~~f~ 530 (830)
.+.+.|+++++.
T Consensus 304 ~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 304 MGAVSMLKNLIH 315 (354)
T ss_dssp TTHHHHHHTTTT
T ss_pred CCCHHHHHHHHh
Confidence 999999998764
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.48 E-value=9.3 Score=46.27 Aligned_cols=245 Identities=13% Similarity=0.082 Sum_probs=150.3
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-------------hcc-------ChHhHHHHH----HHHHhcC
Q 003320 265 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSL-------QMVQQLRLF----RDLMNEG 320 (830)
Q Consensus 265 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~is-------------K~L-------Q~~~R~~lf----~~Lv~~G 320 (830)
.+..+++.|+..+++++. .-...+..-|..++.-. +.. .+-....+- +.+++.|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 418 EDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HCHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 456799999999986543 34556665555555411 000 111222233 5788999
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 400 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 400 (830)
.++.+-..|.++++.++..|+-+|..|.. ++. .|..++++.. +..|+.+| .+.++..+.+...+|..|.-..+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Ga---ip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~- 568 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGG---VKALLRMA-LEGTEKGKRHATQALARIGITIN- 568 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTH---HHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCC---HHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999984 565 5888888653 33445444 34566677788888876652111
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHH
Q 003320 401 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVD 480 (830)
Q Consensus 401 ~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~ 480 (830)
++ ..|+...+...+.||........ ........+--|+.+.... -..+..|+....+.
T Consensus 569 --p~-----~~~~~~~~~~aIppLv~LL~~~~--------------~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~ 626 (810)
T 3now_A 569 --PE-----VSFSGQRSLDVIRPLLNLLQQDC--------------TALENFESLMALTNLASMN-ESVRQRIIKEQGVS 626 (810)
T ss_dssp --HH-----HHTTTHHHHHTHHHHHHTTSTTS--------------CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHH
T ss_pred --hh-----hhhcchhhhcHHHHHHHHhCCCC--------------cHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Confidence 11 01211111124556655321100 0000112344555555443 23556688889999
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHH
Q 003320 481 KVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAV 543 (830)
Q Consensus 481 kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~ 543 (830)
++..|+.+.+..++-+|++++.+++. .++...+++...+.+.+++.++.. +..+.--.||
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa 686 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCED--EDEETATACA 686 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGC--SSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcC--CCHHHHHHHH
Confidence 99999999999999999999999986 444444444236888888876643 2233444444
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.42 E-value=8.3 Score=40.79 Aligned_cols=184 Identities=10% Similarity=0.134 Sum_probs=121.1
Q ss_pred hhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 003320 335 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 414 (830)
Q Consensus 335 ~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~ 414 (830)
.-|..|.++|..+++...+ -+.+ .+..+ +..|+..++...++.++.+.+.+|..+..... ..++.+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~-~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---~~~~~vv~~--- 123 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADF-CQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---AIQEQVLGL--- 123 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHH-HHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhChhh-HHHH-HHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHC---
Confidence 3567788999999985443 3333 33222 34566645678899999999999988863211 123333321
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHH
Q 003320 415 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 494 (830)
Q Consensus 415 ~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~ 494 (830)
..++.|++-|... + ...+....+--|+-+++++...... |...+.+.-++.++++.+.-++
T Consensus 124 g~l~~Ll~LL~~~-~-----------------~~~v~~~A~~ALsnl~~~~~~~~~~-~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 124 GALRKLLRLLDRD-A-----------------CDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp THHHHHHHHHHHC-S-----------------CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHccC-C-----------------CHHHHHHHHHHHHHHHcCCcHHHHH-HHHCCCHHHHHHHHcCCCHHHH
Confidence 4567777655431 0 1234456667777777777654444 4456788888899999999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 003320 495 VAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 495 LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 552 (830)
..|...+..+..-. .-..+++++.+.+.|++.++... +.=+--.++..+..|-+
T Consensus 185 ~~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 185 VKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHh
Confidence 99999999987654 44788999999999999988533 33333444444444443
No 35
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.25 E-value=19 Score=41.80 Aligned_cols=206 Identities=11% Similarity=0.102 Sum_probs=115.5
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcC----hHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQD----PNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehd----PslvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~eaLk~LL 395 (830)
+++.+-.+|+++ +.+|..++..|..+++.- +..+..|+ ..++..|++.+-. +.+..++..++++|..|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-----PALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 345555566665 788888888887776642 22233332 1255666665543 444788888999998887
Q ss_pred CCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhh
Q 003320 396 DSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 475 (830)
Q Consensus 396 Dp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~ 475 (830)
..... +. .-++...++.+++-|....+.+...... ..+.....+...+++.|..+++.-.-.+..|+
T Consensus 529 ~~~~~---~~----~~~~~~l~~~l~~~l~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-- 595 (861)
T 2bpt_A 529 EYATD---TV----AETSASISTFVMDKLGQTMSVDENQLTL----EDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-- 595 (861)
T ss_dssp HHCCG---GG----HHHHHHHHHHHHHHHHHHTTSCGGGCCH----HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--
T ss_pred HHcch---hh----HHHHHHHHHHHHHHHHHHHhhhcccCCh----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--
Confidence 54321 11 2234445555555554321110000000 00011234557788888888877665555443
Q ss_pred chHHHHHHHhhhccch-hHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 476 NNVVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 476 ~nll~kVl~Ll~~~~K-~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
..++..++.++...+. .++-.|+.++.+++..-.+-+..|+-+ ++.+++..+ +.+.++ +-.++++++..|
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l--~~~~~~-vr~~a~~~l~~l 666 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKAL--NQVDSP-VSITAVGFIADI 666 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHH--HCTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHh--ccccHH-HHHHHHHHHHHH
Confidence 4688888888887766 788888988888765433334455543 556666666 223333 444455555444
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.18 E-value=11 Score=43.62 Aligned_cols=175 Identities=14% Similarity=0.233 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 003320 322 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 401 (830)
Q Consensus 322 ~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 401 (830)
.+.+...|.+.|..+|..|.+.|..++.++|..+..+.. . +-..+.+.|..++....++|..|.+..|..
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~---------~-i~~~l~d~d~~Ir~~alelL~~l~~~~nv~ 384 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS---------T-IVDCLKDLDVSIKRRAMELSFALVNGNNIR 384 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH---------H-HHHGGGSSCHHHHHHHHHHHHHHCCSSSTH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH---------H-HHHHccCCChhHHHHHHHHHHHHcccccHH
Confidence 344445577888888888888888888888876654321 2 223457889999999999999999887742
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHH
Q 003320 402 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 481 (830)
Q Consensus 402 ~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~k 481 (830)
. .+..|..-+.+. ..++=..++.-++-|...++-.... .+..
T Consensus 385 ~-------------iv~eL~~~l~~~-------------------d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ 426 (618)
T 1w63_A 385 G-------------MMKELLYFLDSC-------------------EPEFKADCASGIFLAAEKYAPSKRW------HIDT 426 (618)
T ss_dssp H-------------HHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHSSCCCHHH------HHHH
T ss_pred H-------------HHHHHHHHHHhC-------------------CHHHHHHHHHHHHHHHHHhCccHHH------HHHH
Confidence 1 112222222210 1122223344444444443322222 2344
Q ss_pred HHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh----hChHH
Q 003320 482 VLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK----ENLKS 557 (830)
Q Consensus 482 Vl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~----eNik~ 557 (830)
++.+++....+.+-.++..+|.++.... ++-.+++-.|++++.. +.+..
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p---------------------------~l~~~~v~~L~~~l~~~~~~~~~~~ 479 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSV---------------------------EMHAYTVQRLYKAILGDYSQQPLVQ 479 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSC---------------------------STHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCh---------------------------hHHHHHHHHHHHHHhcccccHHHHH
Confidence 5555554444454445555555554322 2444555566666654 44455
Q ss_pred HHHHHHHhhHhhcc
Q 003320 558 LVKYIVDSFWNQLV 571 (830)
Q Consensus 558 Li~hlve~y~~~l~ 571 (830)
.+.|++..|++.+.
T Consensus 480 ~~~wilGEy~~~i~ 493 (618)
T 1w63_A 480 VAAWCIGEYGDLLV 493 (618)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHhc
Confidence 68899999988764
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.15 E-value=4.7 Score=48.82 Aligned_cols=200 Identities=8% Similarity=0.050 Sum_probs=125.3
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 348 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii 348 (830)
.++-|...+.+ +.+...+.+++.-|..++..+ . ..-..+++.|.++.|...|.+.+..++..|++.|..++
T Consensus 581 aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~----d----~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 581 VIRPLLNLLQQ-DCTALENFESLMALTNLASMN----E----SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp THHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45666666653 223334455654444433322 1 12234677899999999999999999999999999888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 003320 349 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 428 (830)
Q Consensus 349 ehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~ 428 (830)
-++. ....++ ++..-+..|+..+ ...+.+++.....+|..|-
T Consensus 652 ~~~~-~~~~~v---~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt--------------------------------- 693 (810)
T 3now_A 652 MSED-VIKMFE---GNNDRVKFLALLC-EDEDEETATACAGALAIIT--------------------------------- 693 (810)
T ss_dssp TSHH-HHHHHH---SSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHH---------------------------------
T ss_pred CChH-HHHHHH---hccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHh---------------------------------
Confidence 7544 333332 2223444555433 3345555544444443331
Q ss_pred CCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhh-chHHHHHHHhhhccchhHHHHHHHHHHHHhcC
Q 003320 429 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL-NNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 507 (830)
Q Consensus 429 p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~-~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l 507 (830)
..+.- ....++. .+.+..+..|+.+.+--++-.|+..+.+++.-
T Consensus 694 ----------------------------------~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 694 ----------------------------------SVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ----------------------------------HHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------CCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 11111 1223444 67778888888888888899999999999875
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 003320 508 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 551 (830)
Q Consensus 508 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr 551 (830)
.+ -+.++|++.|.+.|+.+++.....+++=+--.+++-++-|-
T Consensus 739 s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 739 GE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp CH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 54 46899999999999999887654566655555555555543
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.03 E-value=5.1 Score=47.25 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhhCCcchhhhHhhc-hHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHH
Q 003320 450 ILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA 528 (830)
Q Consensus 450 ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~ 528 (830)
.-.+.+.+|+....+.+-+....|+.. ..+.+++.+|..+...++=.|+-++-.+.. .+....+-+.-.|.|++++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHHH
Confidence 345677888888888888889999977 578999999998889999999999988775 555678888888999999999
Q ss_pred HHHhCC-CCcchHHHHHHHHHHHHhhCh
Q 003320 529 FVANGN-RYNLLNSAVLELFEYIRKENL 555 (830)
Q Consensus 529 f~~ng~-R~NLlnSA~LElfefIr~eNi 555 (830)
+...|. +.-++-+=||.++.-+-+.|.
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 987664 677899999999999998884
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.85 E-value=16 Score=42.12 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=77.8
Q ss_pred CcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 003320 320 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 399 (830)
Q Consensus 320 GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 399 (830)
.+++.|..+|.+.++.+|.+|+--+..+...+|.+++.+ +.. +..++.|.+++++.....+|..+....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~---------~~~-l~~lL~D~d~~V~~~Al~~L~~i~~~~- 210 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF---------LPA-TKNLLNEKNHGVLHTSVVLLTEMCERS- 210 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG---------GGG-TTTSTTCCCHHHHHHHHHHHHHHCCSH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH---------HHH-HHHHhCCCCHhHHHHHHHHHHHHHHhC-
Confidence 457788888999999999999999999999999877542 222 234568999999988888888775321
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHHhc----CCCcccccccCCCCccc-cCcHHHHHHHHHHHHHHHhh
Q 003320 400 LSGAQRDTIIEIFYEKHLGQLIDVITAS----CPQEGIAQSASSGGRVE-STKPEILSNICELLCFCVLH 464 (830)
Q Consensus 400 m~~~e~d~fL~~FY~~~~~~L~~pL~~~----~p~~~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~ 464 (830)
+ +. ...|.++++.|++-|... .+++. .+. ...+++...++++|......
T Consensus 211 ---~---~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~---------~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 211 ---P---DM-LAHFRKLVPQLVRILKNLIMSGYSPEH---------DVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp ---H---HH-HHHHHTTHHHHHHHHHHHHHSCCCTTT---------CSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred ---h---HH-HHHHHHHHHHHHHHHHHHHcCCCCccc---------cccCCCCChHHHHHHHHHHHhCCC
Confidence 1 12 234567777777766542 11111 010 12456666777777766654
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.83 E-value=12 Score=43.67 Aligned_cols=230 Identities=12% Similarity=0.092 Sum_probs=128.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~is-K~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
.++.-+...+.+++.+.+-|..++.-|..++... .++... .++ ..+++++..++.+.+..+|..+++.|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~----~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SER----HFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH----HHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH----HHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4555566667666545566777877777665432 122211 111 1256677777788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC------------ch--hhhHHHHHH
Q 003320 347 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS------------GA--QRDTIIEIF 412 (830)
Q Consensus 347 iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~------------~~--e~d~fL~~F 412 (830)
++...|..+..++. ..++..++..+ .+.++.++.+..+.+..+.+..... .+ ....++.-.
T Consensus 244 l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 244 IMSLYYQYMETYMG----PALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHSGGGCHHHHT----TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHhHHHHHHHHH----HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 99999988777764 23677766654 5677888888888887776432100 00 001223223
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchh
Q 003320 413 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 492 (830)
Q Consensus 413 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~ 492 (830)
++..++.++.-+... .+. .......++......+..+++. ... .+ -..++..+...+...+-.
T Consensus 319 ~~~ll~~ll~~l~~~--~~d---~~~~~~~~r~~a~~~l~~l~~~----~~~-------~~-~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQ--DEN---DDDDDWNPCKAAGVCLMLLATC----CED-------DI-VPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp HHHHHHHHHHHTTCC--CSS---CCTTCCCHHHHHHHHHHHHHHH----HGG-------GG-HHHHHHHHHHHTTCSSHH
T ss_pred HHHHhHHHHHHhhcc--ccc---ccccccHHHHHHHHHHHHHHHH----CcH-------hh-HHHHHHHHHHHccCCChH
Confidence 333444443332211 000 0001112222222223333222 221 11 235666666777778888
Q ss_pred HHHHHHHHHHHHhcCch-hHHHHHHHhhCCHHHHHHHH
Q 003320 493 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 529 (830)
Q Consensus 493 L~LaAlRFlR~iI~l~D-efy~ryiIk~nLf~PIl~~f 529 (830)
.+-+|++.+..+..--. +.+..|+ ..++..++..+
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 89999999998875433 4444554 23566666666
No 41
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.63 E-value=7 Score=44.06 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=136.7
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc-ChHHHHHHHH
Q 003320 284 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 360 (830)
Q Consensus 284 ~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv--~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh-dPslvR~~i~ 360 (830)
..-++.+..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..|+-.|..+... ++. .|..+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~ 283 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 283 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----ccc-----HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 445777887777776421 112 3333 468889999999999999999999999888775 454 466666
Q ss_pred hcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 003320 361 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 440 (830)
Q Consensus 361 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~ 440 (830)
+.. -+..|++.|....+++++.....+|..|--- ....+..+.. -...++.|++-|....+.
T Consensus 284 ~~G---aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~---~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~---------- 345 (458)
T 3nmz_A 284 EVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT---------- 345 (458)
T ss_dssp HTT---HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HcC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHH--hcCcHHHHHHHhcCCCCc----------
Confidence 522 4566788777777888888777787776310 0012222221 134567776666432100
Q ss_pred CccccCcHHHHHHHHHHHHHHH----hhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHH
Q 003320 441 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 516 (830)
Q Consensus 441 ~~~~~~~~~ll~~l~ELL~Fcv----~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryi 516 (830)
...++....+=.|..+. .... .+..+...+.+..++.||++...-++-.|++.++++... +.-...+|
T Consensus 346 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i 417 (458)
T 3nmz_A 346 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL 417 (458)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHhcccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 00012222222222222 2222 355678888999999999988888999999999998754 44468899
Q ss_pred HhhCCHHHHHHHHH
Q 003320 517 VKNNLLKPIVDAFV 530 (830)
Q Consensus 517 Ik~nLf~PIl~~f~ 530 (830)
++.|.+.|+++++.
T Consensus 418 ~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 418 WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998774
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.50 E-value=9.5 Score=44.33 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=50.5
Q ss_pred cHHHHHHHH--cCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 321 IFDIVTDAL--QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 321 L~~vi~~~L--~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
+.+.|..+| .+.++.+|..|+--+..+...+|.+++. ..+++.|.+ ++.|.|+|++....-+|..+
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-------~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-------GDWTSRVVH-LLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-------CSCHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-------hhHHHHHHH-HhCCCCccHHHHHHHHHHHH
Confidence 456667778 8889999999999999999999987641 346666665 45899999987766666555
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.04 E-value=14 Score=43.09 Aligned_cols=239 Identities=13% Similarity=0.064 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhc-cChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKS-LQMVQQLRLFRDLMNEGIFDIVTDALQSQD 333 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~i------------sK~-LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d 333 (830)
+.|+.-|..++.+.+.+..-|.-+...|+.++.. -.. +....|..+-..| -.+|.+++
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~l---------l~~l~~~~ 108 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA---------LTALVSIE 108 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHH---------HHHHTCSS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHH---------HHHHCCCc
Confidence 7888889898887656666677777777765421 011 4444444333222 22467788
Q ss_pred chhhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 003320 334 KKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 412 (830)
Q Consensus 334 ~~ir~~atDIL~~iiehd-PslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~F 412 (830)
..+|..++.+|..|..++ |. ..-..++..|++.+-.+.++.++...+.+|..+.+.-. ...+ .
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~--------~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~--~---- 172 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH--------GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQSQ--A---- 172 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--------TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TTSS--T----
T ss_pred hHHHHHHHHHHHHHHHhhCcc--------cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hhhh--H----
Confidence 899999999988887765 31 01123666666655433377777777777777765311 0011 0
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHh---hCCcchhhhHhhchHHHHHHHhhhcc
Q 003320 413 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL---HHPYRIKCNFLLNNVVDKVLLLTRRR 489 (830)
Q Consensus 413 Y~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~---~H~yriK~~il~~nll~kVl~Ll~~~ 489 (830)
...+++.++..+....... + ..+.+-...++.|+.|+. .|... ....+.++.-+..++...
T Consensus 173 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~al~~l~~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQST----E---------TSKAVRLAALNALADSLIFIKNNMER---EGERNYLMQVVCEATQAE 236 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTT----C---------CCHHHHHHHHHHHHHHGGGCHHHHTS---HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHccC---hhHHHHHHHHHHHHhcCC
Confidence 1223344444443211000 0 012233334444444432 11100 001122444455566777
Q ss_pred chhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 490 EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 490 ~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
+.-++.+|++++-.++....+++..|+.+ .++..++..+ .+.+.-+-.++++++..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~---~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM---KSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 77888899999999887766655555543 4444444333 234445556666666544
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=90.24 E-value=12 Score=45.08 Aligned_cols=262 Identities=10% Similarity=0.144 Sum_probs=149.3
Q ss_pred HhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccCh----------------H---------h---HHHH-
Q 003320 262 LLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQM----------------V---------Q---QLRL- 312 (830)
Q Consensus 262 ~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~----------------~---------~---R~~l- 312 (830)
.|.+|..||..|+..++++.. ..--.+++..|..|++...+++. + . ...-
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 466678899999999985221 12234444444444433222111 0 0 1112
Q ss_pred -HHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChh--HHHHHHH
Q 003320 313 -FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED--MHCQFLE 389 (830)
Q Consensus 313 -f~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~g--lk~Ql~e 389 (830)
-+.+++.|..+.+-..+++.++.+|..++-+|..+... +. .|..+++|.+ +..|+..+....+.+ .+.....
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~-~R~~lvqqGa---l~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN-FIPQLAQQGA---VKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHTTH---HHHHHHHTTCC---CCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCC---HHHHHHHHhcCCCcchHHHHHHHH
Confidence 24577999999999999999999999999999988744 55 3888887643 223333333332221 3444444
Q ss_pred HHHHhc-------------------------CC--CCCC--------ch--hh------------------hHHHHHHHH
Q 003320 390 ILRSLL-------------------------DS--YTLS--------GA--QR------------------DTIIEIFYE 414 (830)
Q Consensus 390 aLk~LL-------------------------Dp--~~m~--------~~--e~------------------d~fL~~FY~ 414 (830)
||-.|+ .+ ..-. .+ ++ ++.-.....
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 443333 21 1000 00 00 000000111
Q ss_pred --hhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcch-hhhHhhc-hH----HHHHHHhh
Q 003320 415 --KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLN-NV----VDKVLLLT 486 (830)
Q Consensus 415 --~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~-nl----l~kVl~Ll 486 (830)
.+++.|...+.+ ....+-...||++|-.+. ++--+ +.|+-.. .- +.-++.|+
T Consensus 604 ~~ga~~~L~~LL~s-------------------~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll 663 (778)
T 3opb_A 604 TKVYWSTIENLMLD-------------------ENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLL 663 (778)
T ss_dssp SHHHHHHHHHGGGC-------------------SSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred hcCHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHH
Confidence 122222222211 123455667899999886 44433 3444322 22 44566788
Q ss_pred hccchhHHHHHHHHHHHHhcCchhHHHHHHHhh-CCHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 003320 487 RRREKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYI 550 (830)
Q Consensus 487 ~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~-nLf~PIl~~f~~ng~R~NLlnSA~LElfefI 550 (830)
.+.+.-.+-+|.-.+-.+-. .++...+-|++. +.+++++.+|.+.-+..++...++.=|....
T Consensus 664 ~s~D~~~r~AAagALAnLts-~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 664 QLSDVESQRAVAAIFANIAT-TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp GCSCHHHHHHHHHHHHHHHH-HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcC-CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 88888899999888877643 456677888876 7999999999886567777777766555544
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=89.39 E-value=37 Score=39.50 Aligned_cols=269 Identities=10% Similarity=0.073 Sum_probs=133.6
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc--ChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL--QMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~L--Q~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
+++-|+..+.++. ..-|..++..|.++|...... ..+ .+. .+++.+-..|.+. ..+|..++-.|..
T Consensus 409 ~l~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~----~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~ 476 (876)
T 1qgr_A 409 AMPTLIELMKDPS--VVVRDTAAWTVGRICELLPEAAINDV----YLA-----PLLQCLIEGLSAE-PRVASNVCWAFSS 476 (876)
T ss_dssp HHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHCGGGTSSTT----THH-----HHHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhCchhcccHH----HHH-----HHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 3444555555543 345666666667666653321 011 111 2344455556664 7788888888777
Q ss_pred HHhcCh--------------HHHHHHHHhcCCcchHHHHHHHHhcc--CChhHHHHHHHHHHHhcCCCCCCchhhhHHHH
Q 003320 347 FLNQDP--------------NLLRSYVVRQEGIPLLGLLVKGMITD--FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIE 410 (830)
Q Consensus 347 iiehdP--------------slvR~~i~~qe~~~Ll~~Li~~ll~d--~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~ 410 (830)
+++.-. ..+..|+ ..++..|...+-.. .+..++..++++|..|....+. +...++.
T Consensus 477 l~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~~ 548 (876)
T 1qgr_A 477 LAEAAYEAADVADDQEEPATYCLSSSF-----ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK---DCYPAVQ 548 (876)
T ss_dssp HHHHHHHTTSCTTSCCCCCCCSSTTTH-----HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS---TTHHHHH
T ss_pred HHHHhhhccccccccccccchhhhHhH-----HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch---hhHHHHH
Confidence 765321 0111111 12445555544332 1357888889999888764331 2223333
Q ss_pred HHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCC-cchhhhHhhchHHHHHHHhhhcc
Q 003320 411 IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHP-YRIKCNFLLNNVVDKVLLLTRRR 489 (830)
Q Consensus 411 ~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~-yriK~~il~~nll~kVl~Ll~~~ 489 (830)
.++. .++.-+.....-+. ..... ......+.+...+|..|..++..-. ..++.|+ ..++..++.++++.
T Consensus 549 ~l~~----~l~~~l~~~~~~~~---~~~~~-~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~ 618 (876)
T 1qgr_A 549 KTTL----VIMERLQQVLQMES---HIQST-SDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQST 618 (876)
T ss_dssp HHHH----HHHHHHHHHHTTTT---SCCST-THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC---
T ss_pred HHHH----HHHHHHHHHHHHHh---ccCCh-hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhc
Confidence 3333 33333322100000 00000 0000113456788999999988777 6666664 56888999888876
Q ss_pred c--hhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh--hChHHHHHHHHHh
Q 003320 490 E--KYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--ENLKSLVKYIVDS 565 (830)
Q Consensus 490 ~--K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~--eNik~Li~hlve~ 565 (830)
. ..++..|++++.+++..-..-+..|+- .++..++..+. +...+++..+|+-=+-..++. +.+.+.+..++..
T Consensus 619 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 695 (876)
T 1qgr_A 619 AGSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLK-NYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQL 695 (876)
T ss_dssp --CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHc-CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4 477889999999987532222334432 24444444443 323344555544333333322 3454444444444
Q ss_pred hHhhc
Q 003320 566 FWNQL 570 (830)
Q Consensus 566 y~~~l 570 (830)
.-+.|
T Consensus 696 l~~~l 700 (876)
T 1qgr_A 696 LLENL 700 (876)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 33333
No 46
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=88.48 E-value=21 Score=39.44 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=131.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
++.|...+++++ .+-+..++..|+.+|. + .+..| ..+++.|.++.+-..|++++..++..|+-.|..+.-
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344555555543 3567888888888763 1 12223 256789999999999999999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 429 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p 429 (830)
++|.. |..+++..+ +..|++.|-...++.++.+.+.+|..|--.+ ..|..++ +..++.|++-|.....
T Consensus 74 ~~~~~-k~~i~~~G~---i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~----~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 74 RSTTN-KLETRRQNG---IREAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELI----ADALPVLADRVIIPFS 141 (457)
T ss_dssp SCHHH-HHHHHHTTC---HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHH----HHHHHHHHHHTTHHHH
T ss_pred CCHHH-HHHHHHcCC---HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHH----hccHHHHHHHHhcccc
Confidence 76763 666766443 4455665543678899999999998885321 1344343 2667777776632100
Q ss_pred CcccccccCCCCccc-cCcHHHHHHHHHHHHHHHhhCCcchhhhHhhc-hHHHHHHHhhhc------cchhHHHHHHHHH
Q 003320 430 QEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRR------REKYLVVAAVRFV 501 (830)
Q Consensus 430 ~~~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~kVl~Ll~~------~~K~L~LaAlRFl 501 (830)
.. .... ....+ .....++.+.+-.|..+... ...+..+... +++..++.+++. .+.-.+-.|+..+
T Consensus 142 ~~--~~~~--~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 215 (457)
T 1xm9_A 142 GW--CDGN--SNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215 (457)
T ss_dssp TC--C-----------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHH
T ss_pred cc--ccCc--cchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHH
Confidence 00 0000 00000 13456777777777777765 3456677776 899999988874 2223555677777
Q ss_pred HHHh
Q 003320 502 RTIL 505 (830)
Q Consensus 502 R~iI 505 (830)
|++.
T Consensus 216 ~nLs 219 (457)
T 1xm9_A 216 HNLS 219 (457)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7764
No 47
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=87.32 E-value=11 Score=40.83 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=135.4
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-----------CCchhhhhhhHHHHHHHhcCh
Q 003320 284 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDP 352 (830)
Q Consensus 284 ~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atDIL~~iiehdP 352 (830)
...+-.++.+|..++ .. +..|. .+++.|.++.|-..|.. .+..++..|+-.|..+.-.++
T Consensus 46 ~~~~~~A~~aL~nls---~d--~e~R~----~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~ 116 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS---FD--EEHRH----AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116 (354)
T ss_dssp GGTHHHHHHHHHHHH---TS--HHHHH----HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred hHHHHHHHHHHHHHc---CC--HHHHH----HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH
Confidence 344556666665543 22 33333 45788999888877742 234578888889888887766
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 003320 353 NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 432 (830)
Q Consensus 353 slvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~ 432 (830)
.. |..+.... -.+..|+++| ...++.++.+...+|+.|-...+ ...|..+. -...++.|++-|....
T Consensus 117 ~~-k~~i~~~~--GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~---~~G~Ip~Lv~lL~~~~---- 183 (354)
T 3nmw_A 117 AN-KATLCSMK--GCMRALVAQL-KSESEDLQQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK---- 183 (354)
T ss_dssp HH-HHHHHHCH--HHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHH---HTTHHHHHHHHHHHCC----
T ss_pred HH-HHHHHHcC--CcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCC--HHHHHHHH---HCCCHHHHHHHHhcCC----
Confidence 42 44443322 2455667655 46788999999999999954211 11233332 1245788888765421
Q ss_pred cccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHh-hchHHHHHHHhhhccch----hHHHHHHHHHHHHhc-
Q 003320 433 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS- 506 (830)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il-~~nll~kVl~Ll~~~~K----~L~LaAlRFlR~iI~- 506 (830)
...+....+..|.-+.. |.-..|.-|. ....+.-++.|++.... -++-.|...+|++-.
T Consensus 184 --------------~~~~~~~A~~aL~nLs~-~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 184 --------------KESTLKSVLSALWNLSA-HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHHHc-cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 12233344444444443 2222355555 67788888889876543 256667777777654
Q ss_pred --CchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 003320 507 --RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 549 (830)
Q Consensus 507 --l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LElfef 549 (830)
..++ +...+++.+.+.|++.++.. + ...+...|+--|...
T Consensus 249 ~a~~~~-~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 249 IATNED-HRQILRENNCLQTLLQHLKS-H-SLTIVSNACGTLWNL 290 (354)
T ss_dssp HTTCHH-HHHHHHTTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHH
T ss_pred ccCCHH-HHHHHHHcCCHHHHHHHHcC-C-ChHHHHHHHHHHHHH
Confidence 4554 67888999999999998863 2 223444455444444
No 48
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=84.64 E-value=17 Score=41.00 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=124.1
Q ss_pred HHHhcCcHHHHHHHHcC-----------CCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhH
Q 003320 315 DLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDM 383 (830)
Q Consensus 315 ~Lv~~GL~~vi~~~L~~-----------~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~gl 383 (830)
.+++.|.++.|-..|.. .+..++..|+-+|..+.-.++.. +..+.... -.+..|+++| ...++.+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~~--GaIp~LV~LL-~s~~~~v 259 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLCSMK--GCMRALVAQL-KSESEDL 259 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHCH--HHHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHHHHHcC--CcHHHHHHHH-hCCCHHH
Confidence 45688999988888842 23457788888888888777642 44333221 2456677655 4678899
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHh
Q 003320 384 HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 463 (830)
Q Consensus 384 k~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~ 463 (830)
+.+.+.+|+.|-...+ ...|..+. -...++.|++-|.... ...+....+-.|.-+..
T Consensus 260 ~~~A~~aL~nLs~~~~--~~~k~~I~---~~GaI~~LV~lLl~s~------------------~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 260 QQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK------------------KESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHHHHTSSCC--HHHHHHHH---HTTHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHH---HcCCHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHcc
Confidence 9999999999853211 11223222 1346778877664320 11233333334433333
Q ss_pred hCCcchhhhHh-hchHHHHHHHhhhccch----hHHHHHHHHHHHHhc---CchhHHHHHHHhhCCHHHHHHHHHHhCCC
Q 003320 464 HHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS---RHDEHLINHFVKNNLLKPIVDAFVANGNR 535 (830)
Q Consensus 464 ~H~yriK~~il-~~nll~kVl~Ll~~~~K----~L~LaAlRFlR~iI~---l~Defy~ryiIk~nLf~PIl~~f~~ng~R 535 (830)
+ .-..|.-|. ....+.-++.|+..... -++-.|...+|++-. -+++ +...|++.+.+.|++.++.. ++
T Consensus 317 ~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~-~~- 392 (458)
T 3nmz_A 317 H-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKS-HS- 392 (458)
T ss_dssp H-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSC-SC-
T ss_pred C-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcC-CC-
Confidence 2 222345555 67788888888876543 266667777777654 4444 67888999999999988753 22
Q ss_pred CcchHHHHHHHHHHH
Q 003320 536 YNLLNSAVLELFEYI 550 (830)
Q Consensus 536 ~NLlnSA~LElfefI 550 (830)
....-.||--|...-
T Consensus 393 ~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 393 LTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 234455555454443
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=83.71 E-value=19 Score=35.71 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=102.6
Q ss_pred HHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhh
Q 003320 327 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 406 (830)
Q Consensus 327 ~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d 406 (830)
..+.+.+-..|..|.+-|..+++..|... ...-..++..|.+.+-.|.+..++...+.+|..|... + +.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l----~~ 90 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--L----AK 90 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--H----GG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--H----hh
Confidence 34578888999999999998888654421 1111235666666554588888887777777777521 0 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhh
Q 003320 407 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT 486 (830)
Q Consensus 407 ~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll 486 (830)
.| ..++..++.+|+..... .++.+-...++.|.-|+...+ -..++..++..+
T Consensus 91 ----~~-~~~~~~ilp~ll~~l~d---------------~~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l 142 (242)
T 2qk2_A 91 ----RF-SNYASACVPSLLEKFKE---------------KKPNVVTALREAIDAIYASTS--------LEAQQESIVESL 142 (242)
T ss_dssp ----GG-HHHHHHHHHHHHHGGGC---------------CCHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHT
T ss_pred ----hH-HHHHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHH
Confidence 13 34566677777663110 122344455666666665443 146788888889
Q ss_pred hccchhHHHHHHHHHHHHhcCc--hhHHHHHHHhhCCHHHHHHHH
Q 003320 487 RRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAF 529 (830)
Q Consensus 487 ~~~~K~L~LaAlRFlR~iI~l~--Defy~ryiIk~nLf~PIl~~f 529 (830)
..+...++..++.++..++... +.++..|+ ..+...++.++
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 8888899999999999988773 33455555 23444455555
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=82.95 E-value=68 Score=37.91 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred HHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHH
Q 003320 245 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 324 (830)
Q Consensus 245 ~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~v 324 (830)
+..|..+.-.+....=+.+.+.+.=+..|.+.+.++. ..-|.+++.+|.+++.-..++|. -+.-.|.|+.
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~iQk--------lVAFEnaFe~ 212 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGAIQK--------IVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHHHHH--------HHHHTTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHHHHH--------HHHHhccHHH
Confidence 3344444444433344455556667788888888653 56799999999998887666652 2234577777
Q ss_pred HHHHHcCCCc----hhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh------hHHH--HHHHHHH
Q 003320 325 VTDALQSQDK----KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE------DMHC--QFLEILR 392 (830)
Q Consensus 325 i~~~L~~~d~----~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~------glk~--Ql~eaLk 392 (830)
+-.++..+.. -+..-+.-+|..++.++|+- ..++.+....+ -|+..+-.+.+. -++. -+.+++|
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~---~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQ---RMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGG---GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHH---HHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 7777765543 34445567788899999974 33333322111 112222111111 1122 2678999
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhh
Q 003320 393 SLLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKC 471 (830)
Q Consensus 393 ~LLDp~~m~~~e~d~fL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~ 471 (830)
+|+.|.+..+..+ ..=+.|++.. +..|++-++... ....+....+-.+.=.++.|+. ...
T Consensus 289 lLv~~~~~~~~t~-~nQ~~~~~~g~l~~Ll~ll~~~~-----------------~p~~i~~~Al~tla~~irgN~~-~Q~ 349 (651)
T 3grl_A 289 VLVSPNNPPGATS-SCQKAMFQCGLLQQLCTILMATG-----------------VPADILTETINTVSEVIRGCQV-NQD 349 (651)
T ss_dssp HHTCTTSCHHHHH-HHHHHHHHTTHHHHHHHHHTCSS-----------------CCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHhCCCCCCCCCH-HHHHHHHHCCCHHHHHHHHccCC-----------------CCHHHHHHHHHHHHHHHhCCHH-HHH
Confidence 9999876421111 1223455543 566666554321 1112222223333334444433 223
Q ss_pred hHhhc--------h-HHHHHHHhhhccch-hHHHHHHHHHHHHhcCchh
Q 003320 472 NFLLN--------N-VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDE 510 (830)
Q Consensus 472 ~il~~--------n-ll~kVl~Ll~~~~K-~L~LaAlRFlR~iI~l~De 510 (830)
+|-.. . ++.-.+.++++++. -++++|.-||++.+.-|++
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 33222 2 22222334566664 4589999999999877763
No 51
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=82.57 E-value=59 Score=35.82 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 003320 322 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 401 (830)
Q Consensus 322 ~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 401 (830)
++.+-..|++++..++..|+..|..+..+++.. |..+.+.. -+..|++.| ...++.++.+...+|+.|.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~i~~~g---~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~--- 75 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLG---GICKLVDLL-RSPNQNVQQAAAGALRNLVFRS--- 75 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTT---HHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCC---
Confidence 345556778889999999999999988777763 54455432 355566644 5678889989999999886420
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHH
Q 003320 402 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 481 (830)
Q Consensus 402 ~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~k 481 (830)
...|..+.+ ...++.|++-|... ..+++....+-.|..+..++ ..|..|+. +.+..
T Consensus 76 ~~~k~~i~~---~G~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~ 131 (457)
T 1xm9_A 76 TTNKLETRR---QNGIREAVSLLRRT------------------GNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPV 131 (457)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHTTC------------------CCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHhhC------------------CCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHH
Confidence 112222222 13567777766311 02244455666666666653 36778888 99999
Q ss_pred HHHhhhc--------c--------chhHHHHHHHHHHHHhcCchhHHHHHHHhh-CCHHHHHHHHHH
Q 003320 482 VLLLTRR--------R--------EKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVA 531 (830)
Q Consensus 482 Vl~Ll~~--------~--------~K~L~LaAlRFlR~iI~l~Defy~ryiIk~-nLf~PIl~~f~~ 531 (830)
++.++.. . ..-+.-.|++.++++.+- ++ +-..|++. +.+.|++.++..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHh
Confidence 9999832 1 123444888999998764 43 66667776 999999998874
No 52
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=82.29 E-value=5.3 Score=45.23 Aligned_cols=126 Identities=18% Similarity=0.317 Sum_probs=72.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHh-CC-CCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCc
Q 003320 257 AYVVSLLKDDSTFIQELFARL-RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDK 334 (830)
Q Consensus 257 veIV~~Lq~d~~FL~eLF~~l-~~-~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~ 334 (830)
-+|++++..|+..-..++.-+ +- |-++. .+ -|.||.|+-.+...+++.. |..+. .-||..|..++.++..
T Consensus 269 ycv~qf~eKDp~L~~~vi~~LLk~WP~tns--~K-evlFL~eleeile~~~~~e----f~~i~-~~lF~~la~ci~S~hf 340 (449)
T 2npp_B 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHS--PK-EVMFLNELEEILDVIEPSE----FVKIM-EPLFRQLAKCVSSPHF 340 (449)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHTCCSSCH--HH-HHHHHHHHHHHHTTCCHHH----HHHHH-HHHHHHHHHHHTCSCH
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCc--hH-HHHHHHHHHHHHHhCCHHH----HHHHH-HHHHHHHHHHHcCCCH
Confidence 368889988876544444322 11 22321 22 2779999988887776653 22222 2378888999998887
Q ss_pred hhhhhhh-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 003320 335 KLVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 398 (830)
Q Consensus 335 ~ir~~at-----DIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 398 (830)
+|--.|. +-++.++..+...+--.++ ..|.+..-..=+..++.-...++++|+|-+
T Consensus 341 qVAErAL~~w~N~~i~~li~~n~~~IlPii~--------p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 341 QVAERALYYWNNEYIMSLISDNAAKILPIMF--------PSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHHHGGGGCHHHHHHHHTTHHHHHHHHH--------HHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCHHHHHHHHhchhhhHHhhH--------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 7654443 4445555544443322211 112121222235677888888999887654
No 53
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=81.64 E-value=6 Score=44.19 Aligned_cols=249 Identities=19% Similarity=0.294 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHhh--ChhhHHHHHHHHhcChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH---HHH--cCChhh
Q 003320 99 LSTLPLILKTVTES--GIADQMRLTELILNDQDFFRKLMDLFRICEDLE---NIDGLHMIFKIIKG---IIL--LNSPQI 168 (830)
Q Consensus 99 l~nL~eI~~~i~~~--s~~~rerla~~Il~~~~YI~KLl~LF~~cEdle---~~~~Lh~L~~IvK~---Iil--LNd~~I 168 (830)
..+|.-+.+++..- ++.-.-++++-.+ |..++.+|+++|+...--| -..-||++|.=+-+ .|. +| +-+
T Consensus 98 WpHLqlVYe~llrfi~s~~f~~~~~k~~i-d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~in-nif 175 (403)
T 3fga_B 98 WPHLQLVYEFFLRFLESPDFQPNIAKKYI-DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN-NIF 175 (403)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHTTTS-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHH
T ss_pred cHHHHHHHHHHHHHHhccccChhhHHhhc-CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHH
Confidence 34666666655331 2211223443333 4689999999997542222 12345554432211 111 11 123
Q ss_pred HhHhhcchhHhHHhhhccc------CCCCCCccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcccccch
Q 003320 169 FEKIFGDELMMDIIGSLEY------DPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDE 242 (830)
Q Consensus 169 iE~llsDe~i~~VVG~LEY------DPe~p~~~nHR~fL~~~a~FKEVVPI~d~~i~~KIHqTYRLqYLKDVVLaRiLDD 242 (830)
+..+...+..-||-..||- .=..|-+..|+.||.+ =.+|+- .+-.+.+-
T Consensus 176 ~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~-----vLlPLH---------k~~~~~~y----------- 230 (403)
T 3fga_B 176 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK-----VLLPLH---------KVKSLSVY----------- 230 (403)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-----TTTGGG---------GSTTGGGT-----------
T ss_pred HHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHH-----HHHHHH---------cCCcchhh-----------
Confidence 3344455545554444441 2223444578888752 123332 11111100
Q ss_pred hhHHhhHHHHHhhHHHHHHHhhcCHHHHHHHHHHh-CC-CCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcC
Q 003320 243 ATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARL-RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEG 320 (830)
Q Consensus 243 ~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l-~~-~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~G 320 (830)
..-| .-+|++++..|+..-..+..-+ +- |.++. . .-|.||.|+-.+...+++.. |... ..-
T Consensus 231 --~~qL-------~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns--~-KevlFL~Ele~iLe~~~~~~----f~~i-~~~ 293 (403)
T 3fga_B 231 --HPQL-------AYCVVQFLEKDSTLTEPVVMALLKYWPKTHS--P-KEVMFLNELEEILDVIEPSE----FVKI-MEP 293 (403)
T ss_dssp --HHHH-------HHHHHHHHHHCGGGHHHHHHHHHHTCCSSCH--H-HHHHHHHHHHHHHTTCCHHH----HHHH-HHH
T ss_pred --HHHH-------HHHHHHHHHhCchhHHHHHHHHHHhCCCCCc--H-HHHHHHHHHHHHHHhCCHHH----HHHH-HHH
Confidence 0111 2368899999986544444322 11 22221 1 23779999988887776542 2222 122
Q ss_pred cHHHHHHHHcCCCchhhhhhh-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 321 IFDIVTDALQSQDKKLVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~at-----DIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
||..|..++.++..+|--.|. +-++.++..++..+--.+ +..|-+..-..=+..++.....+||+|+
T Consensus 294 lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii--------~p~L~~~~~~HWn~~v~~l~~~vlk~l~ 365 (403)
T 3fga_B 294 LFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIM--------FPSLYRNSKTHWNKTIHGLIYNALKLFM 365 (403)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHH--------HHHHHHTTSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 678888888888776544443 555556655555433222 2233333333446788888889999998
Q ss_pred CCCC
Q 003320 396 DSYT 399 (830)
Q Consensus 396 Dp~~ 399 (830)
|-+.
T Consensus 366 e~d~ 369 (403)
T 3fga_B 366 EMNQ 369 (403)
T ss_dssp TTSC
T ss_pred HhCH
Confidence 6443
No 54
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=80.85 E-value=37 Score=39.49 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=106.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCccccC
Q 003320 368 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVEST 446 (830)
Q Consensus 368 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~ 446 (830)
+..|+.+|-...++.++.+...||.-|-..... ....+-..+- ...++.|++-|.. .
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~---~~~~~~~~v~~~~glp~Lv~LL~s-------------------~ 367 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQEKALSAIADLLTN-------------------E 367 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH---HHHHHHHHHTSHHHHHHHHHGGGC-------------------S
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHcCcHHHHHHHHcC-------------------C
Confidence 456677776667889999999999988543211 1111111221 2345555554422 1
Q ss_pred cHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccc--------hhHHHHHHHHHHHHhcCchhHHHHHHHh
Q 003320 447 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRRE--------KYLVVAAVRFVRTILSRHDEHLINHFVK 518 (830)
Q Consensus 447 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~--------K~L~LaAlRFlR~iI~l~Defy~ryiIk 518 (830)
...+....|-.|..+..++. .+..| ....+.++++||...+ .-.+.+|++.+.+++.-+++ ..+.|+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~ 443 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRE 443 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 23566778888999988764 45544 7789999999987653 23567899999999866554 6889999
Q ss_pred hCCHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 003320 519 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 552 (830)
Q Consensus 519 ~nLf~PIl~~f~~ng~R~NLlnSA~LElfefIr~ 552 (830)
.+.+.+++.++.......+..-.|+.=|......
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999999864334556777777766666443
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=79.83 E-value=71 Score=39.46 Aligned_cols=219 Identities=9% Similarity=0.065 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHH
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 345 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK-~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~ 345 (830)
+.-|..|+..+.+++ .+-|+.+...|.+...-.. .+.+... ..+++.+-..|.+++..+|.+|...|.
T Consensus 5 ~~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~---------~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSE---------RKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp CHHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHH---------HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHH---------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345778888887654 5677777777766442210 1111111 123444555677899999999999998
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 003320 346 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 425 (830)
Q Consensus 346 ~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~ 425 (830)
.++..-+.-.+. .++..|++.+ .+.++.++.....+|..+..--.-.. ....+...+++..++.|+.-+.
T Consensus 74 ~l~~~~~~~~~~--------~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 74 PLVSKVKEYQVE--------TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHTTSCHHHHH--------HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHH--------HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHc
Confidence 888766552222 2455666654 45566676666666666642111000 0012344556666666666442
Q ss_pred hcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 426 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 426 ~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
+. . ....-...++.|+-++....-.+..|+ ..++..++.++...+..++-.|++.+..++
T Consensus 144 ~~-----------~-------~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 144 KQ-----------E-------DVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CC-----------S-------CHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred CC-----------C-------chHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 10 0 112223444555555544333333333 668888888888888899999999999987
Q ss_pred cCc-hhHHHHHHHhhCCHHHHHHHHHHh
Q 003320 506 SRH-DEHLINHFVKNNLLKPIVDAFVAN 532 (830)
Q Consensus 506 ~l~-Defy~ryiIk~nLf~PIl~~f~~n 532 (830)
..- +++ -..++.+++..+...
T Consensus 204 ~~~~~~~------~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 204 MSCGNIV------FVDLIEHLLSELSKN 225 (1230)
T ss_dssp TTC----------CTTHHHHHHHHHHHT
T ss_pred HhcCHHH------HHHHHHHHHHHhccC
Confidence 653 333 223455666666543
No 56
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=77.89 E-value=2.6 Score=39.92 Aligned_cols=70 Identities=9% Similarity=0.186 Sum_probs=57.8
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc---CceeEeccCCc--cccccccccCccchhHHHHHHHHHhhcc
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE---DTIISWRDPEY--STELALSFQEPTGCSYIWDNICNVQRNL 74 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq---eTLIvWte~~~--g~DlALSFQe~~GC~~IWe~I~~VQ~~~ 74 (830)
.-.+||+|.+....++|.+.|.++-.|++.. .+.+.|..++. -.-+||.|-.++-++++-+.|.+.|...
T Consensus 48 ~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 48 GKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp EEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 3589999999989999999999999998875 68888873321 2469999999999999999999998764
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.52 E-value=57 Score=31.06 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHH---------hhhccChHhHHHHHHHHHhcC---cHHHHHHHHcCC
Q 003320 265 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG---------LSKSLQMVQQLRLFRDLMNEG---IFDIVTDALQSQ 332 (830)
Q Consensus 265 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~---------isK~LQ~~~R~~lf~~Lv~~G---L~~vi~~~L~~~ 332 (830)
.++..+..|...+++++ ...|..++.-|.++.. +.++=.+.-|..-...|...| .++.+...|.++
T Consensus 16 ~~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE 93 (211)
T ss_dssp CCGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred cCHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 34556666666666433 3445555544443321 111112233444444444332 556666666666
Q ss_pred CchhhhhhhHHH
Q 003320 333 DKKLVLTGTDIL 344 (830)
Q Consensus 333 d~~ir~~atDIL 344 (830)
+..+|..++..|
T Consensus 94 ~~~vr~~a~~aL 105 (211)
T 3ltm_A 94 DGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666665555444
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=74.46 E-value=22 Score=43.95 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=115.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCchhhhhhhHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILIL 346 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~-~~d~~ir~~atDIL~~ 346 (830)
.++..|...+.+++. .-|.-+..-|.+++. .+.+.....-+..-.-..+++.+-.++. +++..+|..|.++|..
T Consensus 86 ~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~---~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKE--QLRDISSIGLKTVIG---ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHTTCSSS--HHHHHHHHHHHHHHH---HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH--HHHHHHHHHHHHHHH---hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 455666666766554 335556666665543 4443310000000112246777777887 5788999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 003320 347 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 426 (830)
Q Consensus 347 iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~ 426 (830)
+++..+..+..|+ ..++..|...| .+.++.++.+...+|..+...-. + -||+..++.|+.-|..
T Consensus 161 ~~~~~~~~l~~~~-----~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~------~----~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 161 MLSRQGGLLVNFH-----PSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCG------N----IVFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHTCSSCTTTH-----HHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC--------------CTTHHHHHHHHHHH
T ss_pred HHHHhHhHHHHHH-----HHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcC------H----HHHHHHHHHHHHHhcc
Confidence 8875543222221 12445555444 56778899999999988875321 1 1366777888777765
Q ss_pred cCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhc
Q 003320 427 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~ 506 (830)
... ..++.. .|+.+..++.....+++.|+ ..++.-++..+...+.-++-+|+.++-.++.
T Consensus 225 ~~~-----------~~~r~~-------a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 225 NDS-----------MSTTRT-------YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp TCS-----------SCSCTT-------HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred CCc-----------hhHHHH-------HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 210 011111 24445555555454555443 4688888888877777788888888887765
Q ss_pred C
Q 003320 507 R 507 (830)
Q Consensus 507 l 507 (830)
.
T Consensus 285 ~ 285 (1230)
T 1u6g_C 285 R 285 (1230)
T ss_dssp C
T ss_pred H
Confidence 4
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=73.04 E-value=60 Score=32.95 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=109.0
Q ss_pred cHHhHHHHHHHHHH-HHHhhhccCh-HhHHHHHHHHHhcCcHHHHHHHH-cCCCchhhhhhhHHHHHHHhcCh-HHHH-H
Q 003320 283 LEESKKNLVHFLHE-FCGLSKSLQM-VQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDP-NLLR-S 357 (830)
Q Consensus 283 ~~e~rrdlV~FL~E-~c~isK~LQ~-~~R~~lf~~Lv~~GL~~vi~~~L-~~~d~~ir~~atDIL~~iiehdP-slvR-~ 357 (830)
.-..|++++.=|.. ++.=+..+.. ... | ..++..+..+| ++.+..+|..|+..|..+...=. .-+. .
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~---~-----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQN---Y-----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCccc---H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 44677777765555 5531222321 000 1 13456677788 78899999999999888774221 1122 4
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccccccc
Q 003320 358 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA 437 (830)
Q Consensus 358 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~ 437 (830)
|... ++..|++.+ .|...-++..+..+|..++..-+..... .+++.++..|+....
T Consensus 101 y~~~-----llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~----------~~l~~ll~~l~~~l~-------- 156 (249)
T 2qk1_A 101 YVSL-----VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASS----------GRNEDMLKDILEHMK-------- 156 (249)
T ss_dssp HHHH-----HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTT----------CTTHHHHHHHHHHTT--------
T ss_pred HHHH-----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccC----------CcHHHHHHHHHHHHc--------
Confidence 4322 666666655 6777888888888877776432110000 002233333333210
Q ss_pred CCCCccccCcHHHHHHHHHHHHHHHhhCCcchhhh--HhhchHHHHHHHhhhccchhHHHHHHHHHHHHh
Q 003320 438 SSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN--FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 505 (830)
Q Consensus 438 ~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~--il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI 505 (830)
..++++=...+..|+.|+....-..+.| .+...++..+..++.-.++-++-+|..++-++.
T Consensus 157 -------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 -------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp -------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1123444567888888888876432222 123678888899999889999999999988854
No 60
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=71.85 E-value=6.2 Score=36.51 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred eeEEEecC-CCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHh
Q 003320 8 CLFVIDEE-DNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQ 71 (830)
Q Consensus 8 ~L~V~sE~-d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ 71 (830)
+++.++-. ++.+++++.|.++=.|.+.-.+.-.|.+.+ +=++|.||..+-+....+.+.+.-
T Consensus 48 rI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~F~~~v~~al 110 (115)
T 1egx_A 48 RVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDAAQFAAGMASAL 110 (115)
T ss_dssp EEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSS--CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 45555656 888999999999999999999999999986 789999999999988777665543
No 61
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=71.53 E-value=63 Score=36.81 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=60.5
Q ss_pred hHhHHHHHHHHHhcC-------cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 003320 306 MVQQLRLFRDLMNEG-------IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 378 (830)
Q Consensus 306 ~~~R~~lf~~Lv~~G-------L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d 378 (830)
+.-|..-.++|.+-| +.+.+..+|.+.++.+|..|+--+..+...+|..+.. ..++..|.+ ++.|
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-------~~~~~~l~~-lL~d 171 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-------QGFLDSLRD-LIAD 171 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-------HHHHHHHHH-TTSC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-------ccHHHHHHH-HhCC
Confidence 344554555665433 3455777888999999999999999999999987753 124445554 5679
Q ss_pred CChhHHHHHHHHHHHhcC
Q 003320 379 FGEDMHCQFLEILRSLLD 396 (830)
Q Consensus 379 ~d~glk~Ql~eaLk~LLD 396 (830)
.+++++...+.+|..+..
T Consensus 172 ~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISE 189 (591)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHh
Confidence 999999998888888764
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.79 E-value=80 Score=36.54 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=42.3
Q ss_pred HHHHHHcCCCchhhhhhhHHHHHHHhcChH--HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 003320 324 IVTDALQSQDKKLVLTGTDILILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 399 (830)
Q Consensus 324 vi~~~L~~~d~~ir~~atDIL~~iiehdPs--lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 399 (830)
.+...|.+.++.+|-.|.+.|..++...|. .+.. ....++..+-.+.|..++....++|-.|.++.|
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~---------~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT---------HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT---------THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 344445567777777777777777776652 2221 223334444338888898888888888876644
No 63
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=69.17 E-value=7.5 Score=35.77 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=51.8
Q ss_pred eeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHH
Q 003320 8 CLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNV 70 (830)
Q Consensus 8 ~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~V 70 (830)
+++.+.-.|+.+++++.|.++=.|.+-..+.-.|.+.+ +=++|.||..+-+....+.+.+.
T Consensus 47 rIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 47 RVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp EEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS--CEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcEEEeeEecCCceEEecCccceeEecCC--EEEEEecCCHHHHHHHHHHHHHH
Confidence 44556667889999999999999999999999999986 78999999999988876666543
No 64
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=69.04 E-value=6.5 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=54.8
Q ss_pred ceeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHhhcc
Q 003320 7 LCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRNL 74 (830)
Q Consensus 7 ~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ~~~ 74 (830)
.+|+-+...+..+++++.|.++-.|.+--.+..+|.+.+ .=++|+|++.+-+...-+.+.+.....
T Consensus 47 ~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~--~~~GL~F~se~eA~~F~~~~~~al~~~ 112 (130)
T 1qc6_A 47 FRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR--QVYGLNFASKEEATTFSNAMLFALNIM 112 (130)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS--CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC--EEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 345555557889999999999999999999999999885 789999999998888777777666543
No 65
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=65.61 E-value=6.4 Score=37.04 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=58.0
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc--CceeEec-----cCCc-cccccccccCccchhHHHHHHHHHhhcc
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPEY-STELALSFQEPTGCSYIWDNICNVQRNL 74 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~~-g~DlALSFQe~~GC~~IWe~I~~VQ~~~ 74 (830)
.-.+||+|.+....++|.+.|.++-.|+... +.-++|+ |.+. -.-+||.|-.++-++++.+.|.+.|...
T Consensus 44 ~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 44 GKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp SCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999998764 5678898 3220 1349999999999999999999999754
No 66
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=65.12 E-value=84 Score=32.10 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=80.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
++.|...+.+++...+.+..+...|+-+|.- .++.|. .+++.|.++.+-..|.+++..++..|+-.|..+.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~----~~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ----KSEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC----CcHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5566666776665446677788777765531 122232 35688999999999999999999999999988887
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
.++.- |..+.+..+ +..|+++|-...+..++.+...+|..|=
T Consensus 82 ~~~~n-k~~I~~~Ga---I~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 82 EDNDN-KLEVAELNG---VPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TCHHH-HHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHcCC---HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 66653 566666433 4455665544568899999999998883
No 67
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.54 E-value=9.6 Score=35.66 Aligned_cols=68 Identities=9% Similarity=0.166 Sum_probs=55.9
Q ss_pred ccceeEEEecCC-CcceeEeecCCCchhhhc-cCceeEeccCC---cc------ccccccccCccchhHHHHHHHHHhh
Q 003320 5 EELCLFVIDEED-NETILLHRISPDDIYRKQ-EDTIISWRDPE---YS------TELALSFQEPTGCSYIWDNICNVQR 72 (830)
Q Consensus 5 ~~~~L~V~sE~d-~~~LL~s~I~~~d~YqkQ-qeTLIvWte~~---~g------~DlALSFQe~~GC~~IWe~I~~VQ~ 72 (830)
.-++||||.+.. +.++|.+.|.++-.|+.. .+.+.+|+=+. .+ .-+||-|-.++-++++.+.|.+.|.
T Consensus 46 ~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 46 QKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp SSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 467899999986 899999999999999997 46788886321 12 2499999999999999999988774
No 68
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=63.02 E-value=7.2 Score=36.41 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=53.1
Q ss_pred EecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHhhc
Q 003320 12 IDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRN 73 (830)
Q Consensus 12 ~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ~~ 73 (830)
.+-.|..+++++.|.++-.|.+.-.+.-.|.+...+.=++|.||.++-+...=+.|..++..
T Consensus 48 v~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~~ 109 (120)
T 1ddw_A 48 ISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 109 (120)
T ss_dssp EEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 34558889999999999999999999999999876688999999999988877777666654
No 69
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=62.42 E-value=11 Score=35.36 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=51.3
Q ss_pred eeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHH
Q 003320 8 CLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNV 70 (830)
Q Consensus 8 ~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~V 70 (830)
+++.+.-.|+.+++++.|.++-.|.+---+.-.|.+.+ +=++|.|+..+-+....+.+.+.
T Consensus 60 rI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~F~~~v~~a 120 (126)
T 2jp2_A 60 LIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDN--RKFGLTFQSPADARAFDRGVRKA 120 (126)
T ss_dssp EEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECSS--SEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcCC--EEEEEecCCHHHHHHHHHHHHHH
Confidence 34455556889999999999999999999999999986 45999999999998877766554
No 70
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=61.21 E-value=9.8 Score=38.62 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=58.0
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc--CceeEec---cCCcc----ccccccccCccchhHHHHHHHHHhhcc
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS----TELALSFQEPTGCSYIWDNICNVQRNL 74 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~g----~DlALSFQe~~GC~~IWe~I~~VQ~~~ 74 (830)
.-.+||+|.+....++|.+.|.++-.|+++. +.-++|+ +...+ .-+||.|-.++-+..+...|...|..+
T Consensus 84 ~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 84 GAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp CCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999874 5678994 22211 239999999999999999999998763
No 71
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=60.97 E-value=10 Score=35.26 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=52.1
Q ss_pred eeEEEecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHh
Q 003320 8 CLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQ 71 (830)
Q Consensus 8 ~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ 71 (830)
+++.+.-.|+.+++++.|.++-.|.+---+.-.|.+.+ +=++|.|+..+-+....+.+.+.-
T Consensus 51 rIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 51 LVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRIGD--KKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp EEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEeCC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 44555556889999999999999999999999999975 559999999999988877776544
No 72
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=59.71 E-value=9.5 Score=36.83 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=49.9
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccCceeEec--cCCc--cccccccccCccchhHHHHHH
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWR--DPEY--STELALSFQEPTGCSYIWDNI 67 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWt--e~~~--g~DlALSFQe~~GC~~IWe~I 67 (830)
.-.+||+|.+....++|.+.|.++-.|++..++-++|+ |++. -.-++|.|-.++-+. .+..|
T Consensus 67 ~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 67 LQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp EEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSCCEEEEEEECCHHHHHH-HHHHH
T ss_pred ccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCCceEEEEEEECCHHHHH-HHHHH
Confidence 34899999999899999999999999999999999999 4321 235899999888874 44433
No 73
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=58.55 E-value=11 Score=35.96 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=46.7
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhccCceeEeccCC----ccccccccccCccch
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPE----YSTELALSFQEPTGC 60 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~----~g~DlALSFQe~~GC 60 (830)
.-.+||+|.+....++|.+.|.++-.|+++.+.-++|+-.+ .-.-++|.|-.++-+
T Consensus 55 ~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~~~~~~lirfk~~e~a 114 (138)
T 2y8g_A 55 LQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQGVKVFLISASSKDTG 114 (138)
T ss_dssp EEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CCCCCEEEEECCHHHHH
T ss_pred ccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCCceEEEEEEECCHHHH
Confidence 35899999999999999999999999999889999998321 124689999888766
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=56.51 E-value=2.6e+02 Score=31.65 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+.++-..|++++ .++|++++.=|--+..++... ..|++.+++ .+++++..+|..|-=-+..+.+
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcc
Confidence 455666666543 456666664433333333321 234455555 5677777777666555555555
Q ss_pred cChHH
Q 003320 350 QDPNL 354 (830)
Q Consensus 350 hdPsl 354 (830)
.+|.+
T Consensus 79 ~~~e~ 83 (591)
T 2vgl_B 79 SQPDM 83 (591)
T ss_dssp HSHHH
T ss_pred cCchH
Confidence 55554
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=52.56 E-value=3.7e+02 Score=32.25 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-------ccChHhHHHHHHHHHhcCcHHHHHHHHcC
Q 003320 259 VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-------SLQMVQQLRLFRDLMNEGIFDIVTDALQS 331 (830)
Q Consensus 259 IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK-------~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~ 331 (830)
-++.++..+.|+.-|..++.+.+.+.+-|.=+...||..+.-.= .+.+..|..+ +..|+..+. +
T Consensus 26 ~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-----k~~ll~~l~----~ 96 (960)
T 1wa5_C 26 NLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-----KKEIVPLMI----S 96 (960)
T ss_dssp HHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-----HHHHHHHHH----H
T ss_pred HHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-----HHHHHHHHH----h
Confidence 33456778899999999997777777778888888888875421 3555554432 222233222 2
Q ss_pred CCchhhhhhhHHHHHHHhcC-----hHHHHH
Q 003320 332 QDKKLVLTGTDILILFLNQD-----PNLLRS 357 (830)
Q Consensus 332 ~d~~ir~~atDIL~~iiehd-----PslvR~ 357 (830)
....+|...++++..|+.+| |.++-.
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 34778888888888877764 666554
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=51.09 E-value=45 Score=33.94 Aligned_cols=76 Identities=7% Similarity=0.237 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
+..|..|+..+++++ ..-|..++.||-.++.-++.- +.+ |...+...|++++..+|.+.++.+|..|++.+..
T Consensus 145 ~~ll~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~~~--~~~---l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 145 EDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDG--YST---LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCCSC--SHH---HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCc--chh---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 368889999998763 477899999999999876642 111 2222335688999999999999999999999877
Q ss_pred HHh
Q 003320 347 FLN 349 (830)
Q Consensus 347 iie 349 (830)
+..
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 77
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=50.65 E-value=21 Score=35.94 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=56.9
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc--CceeEeccC---Ccc----ccccccccCccchhHHHHHHHHHhhc
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP---EYS----TELALSFQEPTGCSYIWDNICNVQRN 73 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~---~~g----~DlALSFQe~~GC~~IWe~I~~VQ~~ 73 (830)
.-.+||+|.+.-+.++|.+.|.++-.|++.. +.-+||+=+ ..| .-+||.|-.++-+..+...|...|..
T Consensus 110 ~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~ 187 (191)
T 3m1i_B 110 NKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEI 187 (191)
T ss_dssp CCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999984 457888721 113 35999999999999999999888864
No 78
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=49.24 E-value=14 Score=36.59 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=52.9
Q ss_pred EecCCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHhhc
Q 003320 12 IDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQRN 73 (830)
Q Consensus 12 ~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ~~ 73 (830)
.+-.+..+++++.|.++-.|.+.-.+.-.|.+...+.=++|.||.++-+...-+.|..++..
T Consensus 53 vg~~d~kvvinc~I~~~l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 53 ISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp EEEETTEEEEEEECCTTCCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEccCCEEEEecEecCCcEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 34458889999999999999999999999999876688999999999998877777666543
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.29 E-value=1.8e+02 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=15.1
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHH
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILI 345 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~ 345 (830)
.++.+..+|.++++.+|..++..|.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666665554443
No 80
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=46.98 E-value=23 Score=33.81 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=56.6
Q ss_pred ccceeEEEecCCCcceeEeecCCCchhhhcc--CceeEec---cCCcc----ccccccccCccchhHHHHHHHHHhhc
Q 003320 5 EELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS----TELALSFQEPTGCSYIWDNICNVQRN 73 (830)
Q Consensus 5 ~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~g----~DlALSFQe~~GC~~IWe~I~~VQ~~ 73 (830)
.-.+|++|.+.-+.++|.+.|.++-.|++.. +.-+||. |-..| .-+|+-|-.++-+++..+.|.+.|..
T Consensus 59 ~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~ 136 (140)
T 4hat_B 59 NKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEI 136 (140)
T ss_dssp CCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999975 3567895 21112 35999999999999999999888864
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=46.10 E-value=2.8e+02 Score=28.96 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=85.3
Q ss_pred HcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC-----CCCCch
Q 003320 329 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-----YTLSGA 403 (830)
Q Consensus 329 L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-----~~m~~~ 403 (830)
|-+.|.+-+..|.|.|...++.+|..+-..+ ..++..+. .-+.|++.-+....+++|..|++- ..|...
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l-----Dll~kw~~-lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNS-----DLLLKWCT-LRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH-----HHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHH-----HHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3466778888999999888888774331100 01222222 123466766666666666666531 112111
Q ss_pred hhh----------------------HHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHH
Q 003320 404 QRD----------------------TIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 460 (830)
Q Consensus 404 e~d----------------------~fL~~FY~~~-~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 460 (830)
|-. ..+..++.-+ ..+++..+.... ....+-.=.-.|+.+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---------------ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---------------KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---------------GCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHHHHH
Confidence 111 2222333221 233444443321 11112233456788888
Q ss_pred HHhhCCcchhhhHhhchHH---HHHHHhhhccchhHHHHHHHHHHHHhcC-chh
Q 003320 461 CVLHHPYRIKCNFLLNNVV---DKVLLLTRRREKYLVVAAVRFVRTILSR-HDE 510 (830)
Q Consensus 461 cv~~H~yriK~~il~~nll---~kVl~Ll~~~~K~L~LaAlRFlR~iI~l-~De 510 (830)
++..|..-- ...+ .-|+.++..++.-++=+|+.++-.|... .|.
T Consensus 194 li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 194 YITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 888887751 2345 7788999999999999999998876433 444
No 82
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=44.24 E-value=2.5e+02 Score=31.18 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=44.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHh----CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCC
Q 003320 257 AYVVSLLKDDSTFIQELFARL----RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQ 332 (830)
Q Consensus 257 veIV~~Lq~d~~FL~eLF~~l----~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~ 332 (830)
-+|++++..|+..-..++.-+ --.+... -|.||.|+-.+...+++.+=...- .-||..|..++.++
T Consensus 281 ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~K-----evlFL~eleeiLe~~~~~~f~~i~-----~~lF~~la~ci~S~ 350 (392)
T 2jak_A 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPK-----EVMFLNELEEILDVIEPSEFVKIM-----EPLFRQLAKCVSSP 350 (392)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTT-----HHHHHHHHHHHHHTCCHHHHHHHH-----HHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCC
Confidence 368889988876444443322 1122222 288999999888877765322222 23567778888887
Q ss_pred Cchhhhhh
Q 003320 333 DKKLVLTG 340 (830)
Q Consensus 333 d~~ir~~a 340 (830)
..+|--.|
T Consensus 351 hfqVAErA 358 (392)
T 2jak_A 351 HFQVAERA 358 (392)
T ss_dssp SHHHHHHH
T ss_pred cHHHHHHH
Confidence 76654433
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=44.06 E-value=3.2e+02 Score=34.15 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh---ccChHhHHHHHHHHHhc--CcHHHHHHHHcC---------
Q 003320 266 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK---SLQMVQQLRLFRDLMNE--GIFDIVTDALQS--------- 331 (830)
Q Consensus 266 d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK---~LQ~~~R~~lf~~Lv~~--GL~~vi~~~L~~--------- 331 (830)
=++|+.+|+..+.+ +...+.-++.+|..+|.-.. .+....|..+...|... .||..+..+|..
T Consensus 132 Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp CTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45777777777653 22345556677777764321 12222222233333322 233334444432
Q ss_pred ----------CCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 003320 332 ----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 401 (830)
Q Consensus 332 ----------~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 401 (830)
.+..++..+.+.+...+.--|. +++.. ....++..++.. +. ++.++...+++|..++.- .|.
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~---~~i~~-~~~~ll~~l~~~-l~--~~~lr~~A~ecL~~i~s~-~~~ 280 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVSM---SHITA-ENCKLLEILCLL-LN--EQELQLGAAECLLIAVSR-KGK 280 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH---HHHHT-TTSHHHHHHHHG-GG--CTTTHHHHHHHHHHHHTC-CSC
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccCH---HHHHh-ccchHHHHHHHH-cC--CHHHHHHHHHHHHHHHhC-CCC
Confidence 1122344444444444433221 11222 123477777743 33 467888888999888863 333
Q ss_pred chhhhHHHHHHHHhhHHHHHHHH
Q 003320 402 GAQRDTIIEIFYEKHLGQLIDVI 424 (830)
Q Consensus 402 ~~e~d~fL~~FY~~~~~~L~~pL 424 (830)
..++..++.+|+...+..+++-+
T Consensus 281 ~~~~~~li~~l~~~~l~~l~~~~ 303 (1204)
T 3a6p_A 281 LEDRKPLMVLFGDVAMHYILSAA 303 (1204)
T ss_dssp HHHHGGGGGGGSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhHHHHHHHHHh
Confidence 33555566666655555555543
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=42.69 E-value=99 Score=37.74 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhc-cC--hHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc
Q 003320 278 RSPTTLEESKKNLVHFLHEFCGLSKS-LQ--MVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 350 (830)
Q Consensus 278 ~~~~~~~e~rrdlV~FL~E~c~isK~-LQ--~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh 350 (830)
.+....++-|.+...||+.++...-. +- ++ ..| ..+++.+-+++++++..+..+|+.++..++..
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~-----~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAF-----KLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHH-----HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 34455678899999999998764321 11 11 112 23556667899999999999999998877763
No 85
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=41.65 E-value=3.7e+02 Score=29.14 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 348 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii 348 (830)
+++-+...+.++ +..-|+.++..|-+++.. +... .....+++.+...+.+++..+|..|...|..+.
T Consensus 165 l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~---~~~~--------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDD--TPMVRRAAASKLGEFAKV---LELD--------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT---SCHH--------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH---hcHH--------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 333344444543 445677777777666543 3221 123567888888999999999999999998888
Q ss_pred hcChH-HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 349 NQDPN-LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 349 ehdPs-lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
+.-+. .... .++..+ ..++.+.+..++....++|-.+.
T Consensus 232 ~~~~~~~~~~--------~~~~~l-~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 232 QLLPQEDLEA--------LVMPTL-RQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHSCHHHHHH--------HTHHHH-HHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HhCCHHHHHH--------HHHHHH-HHHccCCCHHHHHHHHHHHHHHH
Confidence 76543 2221 133333 33457788888888888777664
No 86
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.04 E-value=2.4e+02 Score=26.63 Aligned_cols=44 Identities=14% Similarity=-0.015 Sum_probs=29.4
Q ss_pred ccChHhHHHHHHHHHhc---CcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 303 SLQMVQQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 303 ~LQ~~~R~~lf~~Lv~~---GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
+=.+..|..-...|... +.++.+...|.+++..+|..++..|..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33455566666666654 467888888888888888776655443
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.98 E-value=2.8e+02 Score=27.44 Aligned_cols=21 Identities=5% Similarity=-0.029 Sum_probs=10.6
Q ss_pred cHHHHHHHHcCCCchhhhhhh
Q 003320 321 IFDIVTDALQSQDKKLVLTGT 341 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~at 341 (830)
+++.+..+|.+++..+|..++
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHH
Confidence 344444555555555554443
No 88
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=39.22 E-value=4.1e+02 Score=28.86 Aligned_cols=190 Identities=10% Similarity=0.034 Sum_probs=107.0
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhc
Q 003320 283 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ 362 (830)
Q Consensus 283 ~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~q 362 (830)
+..-|..++.-|.+++ ..+.+. -+..-+++++.....+++..+|..|+.++..+..+-+...+..
T Consensus 100 ~~~vR~~a~~~L~~l~---~~~~~~--------~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~---- 164 (588)
T 1b3u_A 100 ETVVRDKAVESLRAIS---HEHSPS--------DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---- 164 (588)
T ss_dssp CHHHHHHHHHHHHHHH---TTSCHH--------HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH----
T ss_pred hHHHHHHHHHHHHHHH---HHCCHH--------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH----
Confidence 3455666665555544 444332 1223467788777788889999999999999988877554443
Q ss_pred CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCc
Q 003320 363 EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGR 442 (830)
Q Consensus 363 e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~ 442 (830)
++..+.. ++.|.++.++.+..++|-.+...-. . + .+....++.|..-+.+ ....
T Consensus 165 ----l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~---~--~----~~~~~l~~~l~~~~~d------------~~~~ 218 (588)
T 1b3u_A 165 ----LRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLE---L--D----NVKSEIIPMFSNLASD------------EQDS 218 (588)
T ss_dssp ----HHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSC---H--H----HHHHTHHHHHHHHHTC------------SCHH
T ss_pred ----HHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhc---H--H----hHHHHHHHHHHHHhcC------------CcHH
Confidence 3334443 4578899999999888877754211 1 1 1223334444332211 0011
Q ss_pred cccCcHHHHHHHHHHHHHHHhhCCcchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcC-chhHHHHHHHhhCC
Q 003320 443 VESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR-HDEHLINHFVKNNL 521 (830)
Q Consensus 443 ~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l-~Defy~ryiIk~nL 521 (830)
++......+..+++.+ + .......++..+..++......++-+|++.+-.+... ..+. +...+
T Consensus 219 vr~~a~~~l~~l~~~~-------~----~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l 282 (588)
T 1b3u_A 219 VRLLAVEACVNIAQLL-------P----QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDL 282 (588)
T ss_dssp HHTTHHHHHHHHHHHS-------C----HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTH
T ss_pred HHHHHHHHHHHHHHhC-------C----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHH
Confidence 2222223334443321 1 0112344566666777777777888999988887653 2332 23445
Q ss_pred HHHHHHHH
Q 003320 522 LKPIVDAF 529 (830)
Q Consensus 522 f~PIl~~f 529 (830)
+..++.++
T Consensus 283 ~~~l~~~l 290 (588)
T 1b3u_A 283 VPAFQNLM 290 (588)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555555
No 89
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=39.06 E-value=2.5e+02 Score=28.57 Aligned_cols=81 Identities=9% Similarity=0.031 Sum_probs=62.8
Q ss_pred cchhhhHhhchHHHHHHHhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHHhCCCCcchHHHHHHH
Q 003320 467 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 546 (830)
Q Consensus 467 yriK~~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLlnSA~LEl 546 (830)
...|..|.....+..++.||++.+.-++-.|+.-+|++..-+++ ....|++.+-+.|++.++...++ ..+...|+-=|
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~aL 119 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLL 119 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 44677888889999999999999999999999999998765554 67788999999999999976443 34555555444
Q ss_pred HHH
Q 003320 547 FEY 549 (830)
Q Consensus 547 fef 549 (830)
+..
T Consensus 120 ~nL 122 (233)
T 3tt9_A 120 WNL 122 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 90
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=37.78 E-value=2.4e+02 Score=32.73 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=73.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
++.|...+.++ +.+.+..+...|+.+|.- ....| ..+++.|.++.+-..|.+.+..++..|+-.|..|.-
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~----~~~~k----~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYR----NDKVK----TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CHHHH----HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcC----ChHHH----HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 55666666654 346677888887766631 11223 346788999999999999999999999999998887
Q ss_pred c-ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 350 Q-DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 350 h-dPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
+ ++. -|..|.+.. -+..|+++|-...+.+++.+...+|..|
T Consensus 120 ~~~~~-nk~~I~~~G---aIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 120 GRDQD-NKIAIKNCD---GVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp SSCHH-HHHHHHHTT---HHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHcC---CHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6 454 466666633 2334455444445666666666666555
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=37.14 E-value=3.1e+02 Score=28.43 Aligned_cols=61 Identities=13% Similarity=0.370 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDI 343 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDI 343 (830)
.||++++....+ .+.+-||-++.||.|.|. +..+.. --.++.+...|.++|+.+.-.++..
T Consensus 53 ~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~--~k~~l~-----------~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 53 EFLESVLSLAHD--SNMEVRKQVVAFVEQVCK--VKVELL-----------PHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp HHHHHHHGGGGC--SCHHHHHHHHHHHHHHHH--HCGGGH-----------HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455555554333 557889999999999992 211111 1134566666766666554444443
No 92
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=32.33 E-value=40 Score=32.01 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=48.2
Q ss_pred EEEec--CCCcceeEeecCCCchhhhccCceeEeccCCccccccccccCccchhHHHHHHHHHh
Q 003320 10 FVIDE--EDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQEPTGCSYIWDNICNVQ 71 (830)
Q Consensus 10 ~V~sE--~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe~~GC~~IWe~I~~VQ 71 (830)
.|+++ .|..++|++.|.++-.|.|=-.|.=.|.++. .=+-|.||.++.....=+.+.++-
T Consensus 58 RIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~--~~yGL~F~S~~dA~~F~~~~~~Al 119 (130)
T 3syx_A 58 FIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDD--KKFGLTFQSPADARAFDRGIRRAI 119 (130)
T ss_dssp EEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCeEEEeeeecCCceEEecccccccccccC--eEeecccCCHHHHHHHHHHHHHHH
Confidence 34444 6778999999999999999999999999987 449999999998876555554443
No 93
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=30.91 E-value=75 Score=29.99 Aligned_cols=86 Identities=15% Similarity=0.309 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCc--------HHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHH
Q 003320 286 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI--------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 357 (830)
Q Consensus 286 ~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL--------~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~ 357 (830)
--+++.-.|++||.+-|.--...=..++ .++.+.+ =+++.++|.+.-++++.++.-+|..++.-=- .
T Consensus 35 ~E~~il~~i~ncCe~Ik~~Y~~~fn~l~-d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAtisLLSiIIkKl~----k 109 (145)
T 2jby_A 35 TEMDLLCQLSNCCDFINETYAKNYDTLY-DIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLN----K 109 (145)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----H
Confidence 3457788899999987665444333444 3333333 3577889999999999988888777664211 1
Q ss_pred HHHhcCCcchHHHHHHHHhcc
Q 003320 358 YVVRQEGIPLLGLLVKGMITD 378 (830)
Q Consensus 358 ~i~~qe~~~Ll~~Li~~ll~d 378 (830)
++..+...++-+|+.+..+
T Consensus 110 --I~h~d~~~~~evIn~isa~ 128 (145)
T 2jby_A 110 --IQHTDAAMFSEVIDGIVAE 128 (145)
T ss_dssp --TSCCCGGGGHHHHHHHSSS
T ss_pred --hhccHHHHHHHHHHHHhhh
Confidence 1234556677777776543
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.05 E-value=8.2e+02 Score=29.63 Aligned_cols=221 Identities=15% Similarity=0.241 Sum_probs=115.8
Q ss_pred cCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-----ChHhHHHHHHHHHh--cCcHHHHHHHHcCC-Cchh
Q 003320 265 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-----QMVQQLRLFRDLMN--EGIFDIVTDALQSQ-DKKL 336 (830)
Q Consensus 265 ~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~L-----Q~~~R~~lf~~Lv~--~GL~~vi~~~L~~~-d~~i 336 (830)
.-++|+.+|+..+. .+...+.-++.+|+-+|.-...+ ....|..+-..|.. ..+|.++..+|.+. +..+
T Consensus 135 ~Wp~ll~~L~~~~~---~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~ 211 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS---SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSL 211 (1049)
T ss_dssp TCTTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999986 23344556677777777443322 22222222222322 22566666666543 4567
Q ss_pred hhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCch---hhhHHHHHHH
Q 003320 337 VLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGA---QRDTIIEIFY 413 (830)
Q Consensus 337 r~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~---e~d~fL~~FY 413 (830)
+..+...+..++..-|.- +++. ..++..+++.++. ++.++...+++|..++.-. |... ....|+.+|
T Consensus 212 ~~~aL~~l~~~l~wi~~~---~~~~---~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~-~~~~~~~~~~~~~~l~- 281 (1049)
T 3m1i_C 212 IVATLESLLRYLHWIPYR---YIYE---TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK-IPQDNDLIKRQTVLFF- 281 (1049)
T ss_dssp HHHHHHHHHHHTTTSCTH---HHHS---SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC-CCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCCHH---HHhh---hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHH-
Confidence 777888877766644421 1233 4577887766664 6788888888888887542 2211 112344443
Q ss_pred HhhHHHHHHHHHhcCCCcc-cccccCCCCccccCcHHHHHHHHHHHHHHHhhCCcch------hhhHhhchHHHHHHHhh
Q 003320 414 EKHLGQLIDVITASCPQEG-IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI------KCNFLLNNVVDKVLLLT 486 (830)
Q Consensus 414 ~~~~~~L~~pL~~~~p~~~-~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri------K~~il~~nll~kVl~Ll 486 (830)
...+..|-+- ..|... ....-... .....+....+|++++-+...|.-.+ +.++ ..++.-++..+
T Consensus 282 ~~~l~~l~~s---i~p~~~~l~~~~~~~---~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~ 353 (1049)
T 3m1i_C 282 QNTLQQIATS---VMPVTADLKATYANA---NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS 353 (1049)
T ss_dssp HHHHHHHHHH---TCCTTSCHHHHHHHT---CTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHh---hCCCcccHHHHhccC---CcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH
Confidence 4444443220 111100 00000000 01123455678888877766653322 1111 23344444444
Q ss_pred hccchhHHHHHHHHHHHHhc
Q 003320 487 RRREKYLVVAAVRFVRTILS 506 (830)
Q Consensus 487 ~~~~K~L~LaAlRFlR~iI~ 506 (830)
...+.-+...|+-|.-++..
T Consensus 354 ~~~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHH
Confidence 45566677788888877664
No 95
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=29.35 E-value=2.9e+02 Score=26.55 Aligned_cols=108 Identities=6% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc
Q 003320 271 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 350 (830)
Q Consensus 271 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh 350 (830)
.++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|=+|+.+
T Consensus 17 ~~~IekATs~~~~~~D----w~~~leicD~I~~~~~~~keA----------~ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 17 EQDVEKATNEYNTTED----WSLIMDICDKVGSTPNGAKDC----------LKAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSSSHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555666555432222 234457888877655455544 24566677889999999999999998888
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 003320 351 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 351 dPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 395 (830)
.-..++..+.+ ..+++.|++++-...++.++..+.+.|..+=
T Consensus 83 cG~~Fh~evas---~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 83 CGKIFHLEVCS---RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp TCHHHHHHHTS---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhh---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 66656655543 4477777776643467778877777766653
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.34 E-value=4.6e+02 Score=26.23 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChH-H-HHHHHHhc
Q 003320 285 ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN-L-LRSYVVRQ 362 (830)
Q Consensus 285 e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPs-l-vR~~i~~q 362 (830)
..|.+++.-|.+.+.-.+..... ...+..+ ..+...+..++.+.+..+...|.++|..++..-.. . .+.....
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~- 98 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISR--DDNIQIY--WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT- 98 (278)
T ss_dssp HHHHHHHHHHHHHHHTC------------CCT--TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhCcccccc--hhHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH-
Confidence 45778887776666533322211 1111101 23566778888999999999999999888874321 1 1111110
Q ss_pred CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCc
Q 003320 363 EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGR 442 (830)
Q Consensus 363 e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~ 442 (830)
.-..++..|++-.+.+...+++....+++-.+...... ...++..+....
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----------------~~~~~e~l~~~l-------------- 148 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----------------ITQSVELVIPFF-------------- 148 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS----------------SHHHHHHHGGGG--------------
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc----------------HHHHHHHHHHHH--------------
Confidence 01224555665556677778877766666555422211 122233333210
Q ss_pred cccCcHHHHHHHHHHHHHHHhhCCcchhh-hHhhchHHHHHHHhhhccchhHHHHHHHHHHHH
Q 003320 443 VESTKPEILSNICELLCFCVLHHPYRIKC-NFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 504 (830)
Q Consensus 443 ~~~~~~~ll~~l~ELL~Fcv~~H~yriK~-~il~~nll~kVl~Ll~~~~K~L~LaAlRFlR~i 504 (830)
....+.+-.-.+..|+-|++.+....-. --.-..++.-+..++..+++-+|=+|+.++-.+
T Consensus 149 -~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 149 -EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp -GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 0123455566788888888887654321 112233445566788889999999999988764
No 97
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.85 E-value=7.9e+02 Score=28.10 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCchhhhhhhHHHHHHHhcChH-HHHHHHHhcCCcchHHHHHHHHhcc-CChh-HHHHHHHHHHHhcCCCC
Q 003320 323 DIVTDALQSQDKKLVLTGTDILILFLNQDPN-LLRSYVVRQEGIPLLGLLVKGMITD-FGED-MHCQFLEILRSLLDSYT 399 (830)
Q Consensus 323 ~vi~~~L~~~d~~ir~~atDIL~~iiehdPs-lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g-lk~Ql~eaLk~LLDp~~ 399 (830)
+.|..+|.+....+..++|.|+. .-.|. +++ +..++.+|.+.+..+ +..| +-+++=.+++.|-
T Consensus 119 e~i~~aL~S~~~~l~~~~ckVI~---~s~pk~lfa-------~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls---- 184 (500)
T 3vld_A 119 EDLVKALRSEIDPLKVAACRVIE---NSQPKGLFA-------TSNIIDILLDILFDEKVENDKLITAIEKALERLS---- 184 (500)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHH---TCSSGGGGT-------TSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHhcCChHHHHHHHHHhc---ccCchhHhc-------cChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC----
Confidence 45667778888888888888865 33332 221 467888888888774 5557 8888877888771
Q ss_pred CCchh--hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHHHHhh---CCcchhhhHh
Q 003320 400 LSGAQ--RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH---HPYRIKCNFL 474 (830)
Q Consensus 400 m~~~e--~d~fL~~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~---H~yriK~~il 474 (830)
..+ |..++ +.+. |++... . +...+-+++.++||+.-+.++ +.++-+.|++
T Consensus 185 --sdeLirrril----~nnl-----~lL~~v-----K---------~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~ 239 (500)
T 3vld_A 185 --TDELIRRRLF----DNNL-----PYLVSV-----K---------GRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCF 239 (500)
T ss_dssp --TSHHHHHHHH----TTTH-----HHHHHH-----H---------HHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCC
T ss_pred --chHHHHHHHH----HHhH-----HHHHHH-----h---------cCCCceeHHHHHHHHHHHhcccCcccCCcceeec
Confidence 111 22222 2333 333310 0 012446788999999988555 6888888998
Q ss_pred hchHHH
Q 003320 475 LNNVVD 480 (830)
Q Consensus 475 ~~nll~ 480 (830)
.++=+.
T Consensus 240 ~~~Ei~ 245 (500)
T 3vld_A 240 TKEEIL 245 (500)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 886443
No 98
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.22 E-value=4.7e+02 Score=25.28 Aligned_cols=109 Identities=16% Similarity=0.246 Sum_probs=73.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+.++..+..++....+. ...+-++|.+.++-....|.. ..+|..-|++.++.+...|..+|=+|+.
T Consensus 14 ~~~~IekATs~~l~~~D----w~~ileicD~I~~~~~~~k~A----------~ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 14 LESWLNKATNPSNRQED----WEYIIGFCDQINKELEGPQIA----------VRLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 55566666665443222 234558888877655555554 3567777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhc
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 395 (830)
+.-..++..+.+ ..+++.|++++-. ..+..++..+.+.+..+=
T Consensus 80 NCG~~Fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 80 NCGRRFHNEVGK---FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHhh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 876666665544 4588888886631 245677777777776664
No 99
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.05 E-value=3.1e+02 Score=27.66 Aligned_cols=111 Identities=9% Similarity=0.155 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHH
Q 003320 269 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 348 (830)
Q Consensus 269 FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ii 348 (830)
-+.++..+..++....+. ...+-++|.+.+.=....|.+ ..+|..-|++.++.+...|..+|-+++
T Consensus 8 ~~~~~i~kAT~~~~~~~d----w~~ileicD~I~~~~~~~k~a----------~ral~krl~~~n~~v~l~aL~LLe~~v 73 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETD----WESILQICDLIRQGDTQAKYA----------VNSIKKKVNDKNPHVALYALEVMESVV 73 (226)
T ss_dssp HHHHHHHHHTCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 466677777776543322 334457777765533334443 356777788999999999999998888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 003320 349 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 396 (830)
Q Consensus 349 ehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 396 (830)
..--..++.-+.+ ..+++.|++++=...++.++..+.+.|..+=+
T Consensus 74 kNcG~~f~~eias---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 74 KNCGQTVHDEVAN---KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHCHHHHHHHSS---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8776666655544 34777777765445677888888888877643
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=24.99 E-value=6.9e+02 Score=27.15 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=124.9
Q ss_pred ChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcChH---HHHHHHHhcCCcchHHHHHHHHhccCCh
Q 003320 305 QMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPN---LLRSYVVRQEGIPLLGLLVKGMITDFGE 381 (830)
Q Consensus 305 Q~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehdPs---lvR~~i~~qe~~~Ll~~Li~~ll~d~d~ 381 (830)
++.+-.+|...+.+.+++..+-..|..=+-..|-.++.|+..++-+.+. ..-.|+.+ ..-++.+|+.+-= ..+
T Consensus 63 ~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe-~~d- 138 (341)
T 1upk_A 63 QTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYE-SPE- 138 (341)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGG-STT-
T ss_pred CHHHHHHHHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhc-cch-
Confidence 3445568888999999999999999998989999999999988887753 23356665 2345566665542 223
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCccccCcHHHHHHHHHHHHH
Q 003320 382 DMHCQFLEILRSLLDSYTLSGAQRDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 460 (830)
Q Consensus 382 glk~Ql~eaLk~LLDp~~m~~~e~d~fL~-~FY~~~~~~L~~pL~~~~p~~~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 460 (830)
+..-.-.+||..+--+. +.. .+|..++-.+|+-+.. +.+ + ..+..+.-+=|||+
T Consensus 139 -iAl~~G~mLRecir~e~--------la~~iL~~~~f~~fF~yv~~------------~~F--d-iasDAf~TfkelLt- 193 (341)
T 1upk_A 139 -IALNCGIMLRECIRHEP--------LAKIILWSEQFYDFFRYVEM------------STF--D-IASDAFATFKDLLT- 193 (341)
T ss_dssp -THHHHHHHHHHHHTSHH--------HHHHHHHSGGGGHHHHHTTC------------SSH--H-HHHHHHHHHHHHHH-
T ss_pred -hHhHHHHHHHHHHHhHH--------HHHHHhccHHHHHHHHHhcC------------CCc--h-HHHHHHHHHHHHHh-
Confidence 32233344444332111 111 2333444444442211 011 1 23446677778776
Q ss_pred HHhhCCcchhhhHhhc--hHHHHHHHhhhccchhHHHHHHHHHHHHhcC--chhHHHHHHHhhCCHHHHHHHHHHh
Q 003320 461 CVLHHPYRIKCNFLLN--NVVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 532 (830)
Q Consensus 461 cv~~H~yriK~~il~~--nll~kVl~Ll~~~~K~L~LaAlRFlR~iI~l--~Defy~ryiIk~nLf~PIl~~f~~n 532 (830)
.|.--+-.|+-.| .+..+.-+|+.+..=.-+--+||++..++.- +=.+..|||-..+-++-+|.+|.+.
T Consensus 194 ---~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~ 266 (341)
T 1upk_A 194 ---RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK 266 (341)
T ss_dssp ---SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS
T ss_pred ---ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc
Confidence 3443344555444 2567777899988888889999999998866 7788999999999999888877544
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=24.98 E-value=1e+02 Score=33.51 Aligned_cols=64 Identities=8% Similarity=0.063 Sum_probs=47.3
Q ss_pred cHHHHHHHHcCCCchhhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 321 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 321 L~~vi~~~L~~~d~~ir~~atDIL~~iiehdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
+.+-++.+|.+.++.||.+|+=-..-++..+|.+++.+ ++.+ ..++++++++++.....+|..+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~---------~~~l-~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW---------VNEA-QEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT---------HHHH-HHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH---------HHHH-HHHhcCCCccHHHHHHHHHHHH
Confidence 45567888999999999988777778999999998764 3333 4467889998876555554444
No 102
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.82 E-value=95 Score=32.79 Aligned_cols=77 Identities=16% Similarity=0.409 Sum_probs=56.6
Q ss_pred HHHHHHHH--HHHhhCCcchhhhHhhchHHHHHHHhhh--cc---chhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHH
Q 003320 452 SNICELLC--FCVLHHPYRIKCNFLLNNVVDKVLLLTR--RR---EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 524 (830)
Q Consensus 452 ~~l~ELL~--Fcv~~H~yriK~~il~~nll~kVl~Ll~--~~---~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~P 524 (830)
..+|-.|. -||-.|+- .|..|++-++.-.+--.++ ++ .-+|+|++|-.+-+++...|.-...|+...+++..
T Consensus 71 nRVcnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 44555443 37777765 6778888888766555443 22 35999999999999999999999999999997655
Q ss_pred HHHHH
Q 003320 525 IVDAF 529 (830)
Q Consensus 525 Il~~f 529 (830)
.+..+
T Consensus 150 CLrim 154 (268)
T 2fv2_A 150 CLRIM 154 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 103
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.74 E-value=3.9e+02 Score=24.92 Aligned_cols=106 Identities=6% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhc
Q 003320 271 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 350 (830)
Q Consensus 271 ~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iieh 350 (830)
.++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|-+|+.+
T Consensus 7 d~~iekAT~~~l~~~d----w~~ileicD~I~~~~~~~k~a----------~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED----WGLILDICDKVGQSRTGPKDC----------LRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHTCTTSSSCC----HHHHHHHHHHHTTSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCcCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3445555554432222 445678888887655445544 35666678888888888888888888887
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003320 351 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 394 (830)
Q Consensus 351 dPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 394 (830)
.-..++.-+.+ ..+++.|++.+ ...++.++..+.+.+..+
T Consensus 73 cG~~f~~evas---~~Fl~el~~l~-~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 73 CGKIFHLEVCS---RDFASEVSNVL-NKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp SCHHHHHHHSS---HHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 66555544433 34677776644 556777777777766655
No 104
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.21 E-value=6.8e+02 Score=27.17 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHhhcCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc-----CcH------HHHHHHH
Q 003320 261 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE-----GIF------DIVTDAL 329 (830)
Q Consensus 261 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~-----GL~------~vi~~~L 329 (830)
+++|+|.+|-.|-.. ++++.-|=..+.-+..=-..-=..-|..|+.+ |+. .-|...+
T Consensus 144 ~~~q~D~~Fa~EFI~------------~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 144 QIFQEDKDLVPEFVH------------SEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHTCTTHHHHHHH------------TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHhhcchHHHHHHHH------------hccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Q ss_pred cCCCchhhhhhhHHHHHHHhcChHHHHHHHHh------cCCcchHHHHHHHHh--ccCChhHHHHHHHHHHHhcCCCCCC
Q 003320 330 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVR------QEGIPLLGLLVKGMI--TDFGEDMHCQFLEILRSLLDSYTLS 401 (830)
Q Consensus 330 ~~~d~~ir~~atDIL~~iiehdPslvR~~i~~------qe~~~Ll~~Li~~ll--~d~d~glk~Ql~eaLk~LLDp~~m~ 401 (830)
.+.+..|...|..||..+++++++.---..-. ..+.+.+..|+++|- ...|..++...+-.+..+|..-. +
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap-d 290 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP-D 290 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS-S
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC-C
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHh
Q 003320 402 GAQRDTIIEIFYEKHLGQLIDVITA 426 (830)
Q Consensus 402 ~~e~d~fL~~FY~~~~~~L~~pL~~ 426 (830)
...+.++.+.+=...|...+...+.
T Consensus 291 ~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 291 QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHh
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.86 E-value=3.4e+02 Score=27.00 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHh
Q 003320 270 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 349 (830)
Q Consensus 270 L~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iie 349 (830)
+.++.....++....+. ...+-|+|.+.+.-+...|.. ..+|..-|++.++.+...|..+|-+++.
T Consensus 6 ~~~~ie~AT~~~~~~~d----w~~~leicd~i~~~~~~~k~a----------~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPD----WPSILLICDEINQKDVTPKNA----------FAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp HHHHHHHHHCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHhhcCCCcCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34555555554433222 234567787776544444443 3456666788999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 003320 350 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 396 (830)
Q Consensus 350 hdPslvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 396 (830)
+--..++..+.+ ..+++.|++.+-...+..++..+.+.+..+-+
T Consensus 72 NcG~~f~~eva~---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 72 NCGAPVHEEVFT---KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HSHHHHHHHHSS---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 876666665544 34888888766556677888888887777754
No 106
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.76 E-value=5.9e+02 Score=28.03 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHH
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 347 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~i 347 (830)
.||.++++.-.++ +.+-|+-++.||.|-|.- ..+.. --+++++...|.++|+.+.-.++....++
T Consensus 63 ~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~--~~el~-----------~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK--SIEVRKFVIGFIEEACKR--DIELL-----------LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHH--CGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677777655544 467899999999999952 11111 11345666667777766655455444443
Q ss_pred HhcChHHHH
Q 003320 348 LNQDPNLLR 356 (830)
Q Consensus 348 iehdPslvR 356 (830)
. |..+|
T Consensus 128 Y---pl~f~ 133 (386)
T 3o2t_A 128 Y---KVALQ 133 (386)
T ss_dssp H---HHHHH
T ss_pred H---HHHHH
Confidence 2 55555
No 107
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=22.22 E-value=6.5e+02 Score=27.30 Aligned_cols=132 Identities=12% Similarity=0.194 Sum_probs=82.7
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcC-hHHHHHHHHh-
Q 003320 284 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVR- 361 (830)
Q Consensus 284 ~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehd-PslvR~~i~~- 361 (830)
.....++++-|+.+++. +..+-.-+-....+..|..+|......+|..+++||..+.... |.--...+++
T Consensus 134 ~~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~A 205 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA 205 (383)
T ss_dssp HHHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHH
Confidence 34455667767666553 2333333445567889999999999999999999998877665 2221122221
Q ss_pred ------cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 003320 362 ------QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 424 (830)
Q Consensus 362 ------qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 424 (830)
..+..-+..+++.|-...+..++...+-.+..|+.... +...|-..-.-|..-.+...+..|
T Consensus 206 l~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 206 MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCChHHHHHHH
Confidence 12334566677777655677888888888888887542 112344444455566666666654
No 108
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.20 E-value=4.9e+02 Score=24.58 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHHHHhcC
Q 003320 272 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 351 (830)
Q Consensus 272 eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~iiehd 351 (830)
++..+..++....+. ...+-++|.+.++-+...|.. ..+|..-|++.++.+...|..+|=+|+...
T Consensus 4 ~~iekATs~~l~~~d----w~~~leicD~I~~~~~~~k~a----------~rai~krl~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 4 LWLNKATDPSMSEQD----WSAIQNFCEQVNTDPNGPTHA----------PWLLAHKIQSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp HHHHHHHCTTCSSCC----HHHHHHHHHHHHHSSHHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCcC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 444445444433222 234458888877655555554 356677788999999999999999998886
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhc
Q 003320 352 PNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLL 395 (830)
Q Consensus 352 PslvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LL 395 (830)
-..++..+.+ ..+++.|++.+-. ..++.++..+.+.+..+=
T Consensus 70 G~~fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 70 GEKFHSEVAK---FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp CHHHHHHHTS---HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhh---HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 6666665544 4588888775542 146677877777776663
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=21.88 E-value=4e+02 Score=27.76 Aligned_cols=31 Identities=6% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh
Q 003320 268 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGL 300 (830)
Q Consensus 268 ~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~i 300 (830)
.||+-|..++.++.. .-|..+...|+++|.+
T Consensus 132 ~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v 162 (266)
T 2of3_A 132 AFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDV 162 (266)
T ss_dssp HHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHHHHHH
Confidence 688888888876552 2344444555666554
No 110
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.97 E-value=5e+02 Score=24.03 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCchhhhhhhHHHHH
Q 003320 267 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 346 (830)
Q Consensus 267 ~~FL~eLF~~l~~~~~~~e~rrdlV~FL~E~c~isK~LQ~~~R~~lf~~Lv~~GL~~vi~~~L~~~d~~ir~~atDIL~~ 346 (830)
+.-...++..+++++ ...|..++..|.++.. .+.++.+...|.+++..+|..++..|..
T Consensus 13 ~~~~~~~i~~L~~~~--~~vr~~A~~~L~~~~~-------------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS--YYVRRAAAYALGKIGD-------------------ERAVEPLIKALKDEDAWVRRAAADALGQ 71 (201)
T ss_dssp HHHHHHHHHHTTCSC--HHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCCC--HHHHHHHHHHHHhcCC-------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 345566677776654 3556666655543211 2455666677788888888777665543
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=20.46 E-value=5.6e+02 Score=29.71 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=52.8
Q ss_pred CcchhhhHhhchHHHHHH-HhhhccchhHHHHHHHHHHHHhcCchhHHHHHHHhhCCHHHHHHHHHH
Q 003320 466 PYRIKCNFLLNNVVDKVL-LLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 531 (830)
Q Consensus 466 ~yriK~~il~~nll~kVl-~Ll~~~~K~L~LaAlRFlR~iI~l~Defy~ryiIk~nLf~PIl~~f~~ 531 (830)
.-..+.-++.++++..++ .++...+.-++.+|.-.||++..-...-...||++.|++.|+..++..
T Consensus 64 ~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 64 DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHh
Confidence 445677899999998865 578878889999999999997544333467899999999999998854
Done!