Query 003321
Match_columns 830
No_of_seqs 498 out of 4185
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 21:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-71 6E-76 641.4 40.4 718 17-783 10-788 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-71 4.8E-76 679.7 40.3 725 4-798 13-834 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-41 5.6E-46 356.3 17.5 273 188-461 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 2.2E-18 4.8E-23 212.8 15.5 230 564-799 91-342 (968)
5 PLN00113 leucine-rich repeat r 99.7 9E-18 2E-22 207.4 14.5 227 565-799 139-366 (968)
6 PLN03210 Resistant to P. syrin 99.7 9.7E-17 2.1E-21 198.2 17.8 122 674-800 783-904 (1153)
7 KOG0444 Cytoskeletal regulator 99.7 6.7E-19 1.5E-23 185.2 -3.0 247 572-825 107-375 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 1.6E-17 3.4E-22 175.0 -4.2 204 570-781 152-378 (1255)
9 KOG4194 Membrane glycoprotein 99.5 6.1E-15 1.3E-19 155.0 2.4 220 571-799 200-426 (873)
10 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.8E-20 134.1 -3.6 164 617-789 32-196 (264)
11 KOG4194 Membrane glycoprotein 99.4 5.9E-14 1.3E-18 147.7 5.4 249 541-801 76-353 (873)
12 KOG0472 Leucine-rich repeat pr 99.4 7E-16 1.5E-20 155.1 -9.3 178 614-803 133-311 (565)
13 KOG0617 Ras suppressor protein 99.4 2.2E-15 4.7E-20 134.1 -5.2 181 587-779 29-213 (264)
14 KOG0472 Leucine-rich repeat pr 99.4 3.6E-15 7.8E-20 150.1 -6.7 152 614-776 156-308 (565)
15 PRK04841 transcriptional regul 99.4 3.8E-11 8.2E-16 147.8 24.1 284 191-513 18-334 (903)
16 PRK15370 E3 ubiquitin-protein 99.2 2.1E-11 4.5E-16 141.1 9.0 223 544-800 200-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.2 9.2E-11 2E-15 134.9 12.9 207 567-800 223-456 (788)
18 KOG0618 Serine/threonine phosp 99.2 1.1E-12 2.3E-17 146.0 -2.9 216 576-801 249-488 (1081)
19 PRK15370 E3 ubiquitin-protein 99.2 6E-11 1.3E-15 137.3 10.9 201 567-801 200-400 (754)
20 PRK00411 cdc6 cell division co 99.2 4.8E-09 1E-13 115.8 24.3 286 181-480 28-359 (394)
21 cd00116 LRR_RI Leucine-rich re 99.1 1.3E-11 2.9E-16 132.3 2.8 239 565-803 22-292 (319)
22 cd00116 LRR_RI Leucine-rich re 99.1 8.4E-12 1.8E-16 133.9 -1.0 235 564-799 49-317 (319)
23 KOG0618 Serine/threonine phosp 99.1 7.3E-12 1.6E-16 139.4 -2.2 243 543-797 241-508 (1081)
24 PRK15387 E3 ubiquitin-protein 99.1 6.3E-10 1.4E-14 128.1 11.6 124 641-785 342-465 (788)
25 TIGR02928 orc1/cdc6 family rep 99.0 4.3E-08 9.3E-13 107.1 24.2 285 182-480 14-351 (365)
26 TIGR00635 ruvB Holliday juncti 99.0 1.1E-08 2.3E-13 108.7 16.7 269 184-478 5-288 (305)
27 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.1E-14 102.6 9.8 135 206-346 1-162 (166)
28 PRK00080 ruvB Holliday junctio 99.0 1.4E-08 3.1E-13 108.4 16.3 250 183-479 25-310 (328)
29 KOG0532 Leucine-rich repeat (L 98.9 5.6E-11 1.2E-15 125.6 -3.5 174 573-785 80-253 (722)
30 PF01637 Arch_ATPase: Archaeal 98.9 6.9E-09 1.5E-13 105.7 11.7 188 185-378 1-233 (234)
31 KOG4237 Extracellular matrix p 98.9 9.1E-11 2E-15 118.7 -2.9 215 574-797 73-354 (498)
32 COG2909 MalT ATP-dependent tra 98.9 1E-07 2.2E-12 106.8 20.3 285 191-514 23-341 (894)
33 KOG3207 Beta-tubulin folding c 98.9 2.7E-10 5.8E-15 117.0 -1.6 207 565-777 120-338 (505)
34 TIGR03015 pepcterm_ATPase puta 98.8 1.1E-07 2.4E-12 99.0 17.9 175 203-383 41-242 (269)
35 PF05659 RPW8: Arabidopsis bro 98.8 1.1E-07 2.4E-12 86.4 13.9 135 3-137 6-140 (147)
36 COG3903 Predicted ATPase [Gene 98.7 9E-08 1.9E-12 99.2 12.0 290 203-513 12-316 (414)
37 KOG0532 Leucine-rich repeat (L 98.7 8.2E-10 1.8E-14 116.9 -3.2 195 616-822 73-270 (722)
38 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.7E-13 120.2 4.6 105 617-726 544-651 (889)
39 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 7E-14 109.2 -0.2 207 586-799 116-336 (505)
40 KOG1259 Nischarin, modulator o 98.7 9E-09 1.9E-13 100.5 2.5 124 669-799 284-409 (490)
41 PRK15386 type III secretion pr 98.6 6.6E-08 1.4E-12 102.1 6.7 135 638-799 49-187 (426)
42 COG4886 Leucine-rich repeat (L 98.6 2.9E-08 6.3E-13 109.7 4.4 182 587-782 112-294 (394)
43 KOG1259 Nischarin, modulator o 98.6 1.6E-08 3.4E-13 98.9 1.0 134 638-783 281-416 (490)
44 PF14580 LRR_9: Leucine-rich r 98.5 7.2E-08 1.6E-12 91.0 4.7 121 669-796 19-147 (175)
45 PRK06893 DNA replication initi 98.5 1.9E-06 4E-11 86.8 15.0 144 204-379 38-203 (229)
46 KOG4237 Extracellular matrix p 98.5 6E-09 1.3E-13 105.8 -3.7 181 613-799 86-332 (498)
47 PLN03150 hypothetical protein; 98.5 2.2E-07 4.8E-12 107.6 8.4 113 670-782 419-532 (623)
48 PRK13342 recombination factor 98.5 1.1E-05 2.4E-10 88.9 21.2 171 184-381 13-198 (413)
49 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.5E-12 104.9 5.6 175 614-799 112-287 (394)
50 KOG1909 Ran GTPase-activating 98.5 1.6E-08 3.5E-13 101.5 -1.3 193 585-777 86-310 (382)
51 PTZ00112 origin recognition co 98.4 1.7E-05 3.7E-10 90.1 20.3 202 182-383 754-986 (1164)
52 COG2256 MGS1 ATPase related to 98.4 2.2E-05 4.7E-10 81.3 19.0 151 199-375 42-208 (436)
53 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.6E-13 99.7 -4.2 193 591-817 185-392 (419)
54 PF05496 RuvB_N: Holliday junc 98.4 1.5E-05 3.2E-10 77.0 15.7 169 183-384 24-226 (233)
55 PRK15386 type III secretion pr 98.4 8.5E-07 1.9E-11 93.9 7.8 133 616-775 50-187 (426)
56 PF14580 LRR_9: Leucine-rich r 98.4 8.8E-07 1.9E-11 83.7 7.0 125 689-819 15-147 (175)
57 PLN03150 hypothetical protein; 98.3 7.7E-07 1.7E-11 103.1 7.7 107 694-800 419-526 (623)
58 PF13173 AAA_14: AAA domain 98.3 1.3E-06 2.9E-11 79.1 7.7 113 205-339 2-127 (128)
59 PRK04195 replication factor C 98.3 6.4E-05 1.4E-09 84.7 22.5 171 184-380 15-203 (482)
60 PRK07003 DNA polymerase III su 98.3 7.3E-05 1.6E-09 84.7 21.8 174 183-378 16-220 (830)
61 cd01128 rho_factor Transcripti 98.3 5.2E-07 1.1E-11 90.8 4.2 101 196-298 7-115 (249)
62 cd00009 AAA The AAA+ (ATPases 98.3 5.6E-06 1.2E-10 77.2 11.1 118 187-321 2-131 (151)
63 PF13401 AAA_22: AAA domain; P 98.3 1.5E-06 3.2E-11 79.4 6.0 115 204-319 3-125 (131)
64 PRK14961 DNA polymerase III su 98.2 6.5E-05 1.4E-09 81.3 18.1 174 183-377 16-218 (363)
65 PRK12323 DNA polymerase III su 98.2 3.4E-05 7.4E-10 86.1 15.8 175 183-379 16-225 (700)
66 COG3899 Predicted ATPase [Gene 98.2 6.6E-05 1.4E-09 89.5 18.9 306 185-510 2-385 (849)
67 PRK12402 replication factor C 98.2 7.3E-05 1.6E-09 80.7 17.6 187 184-378 16-225 (337)
68 KOG2120 SCF ubiquitin ligase, 98.2 5E-08 1.1E-12 95.5 -6.2 168 581-755 200-377 (419)
69 PRK14960 DNA polymerase III su 98.1 6.8E-05 1.5E-09 84.1 17.1 174 183-378 15-218 (702)
70 PRK14949 DNA polymerase III su 98.1 5.9E-05 1.3E-09 87.2 17.1 176 183-379 16-220 (944)
71 PLN03025 replication factor C 98.1 7.2E-05 1.6E-09 79.6 16.8 173 184-376 14-197 (319)
72 PRK14963 DNA polymerase III su 98.1 0.0001 2.2E-09 82.4 18.0 171 184-376 15-214 (504)
73 PRK06645 DNA polymerase III su 98.1 0.00011 2.4E-09 81.7 18.2 173 183-376 21-226 (507)
74 PRK05564 DNA polymerase III su 98.1 0.00012 2.5E-09 77.8 17.4 169 185-379 6-190 (313)
75 PRK08727 hypothetical protein; 98.1 0.0001 2.3E-09 74.3 15.8 141 204-376 40-201 (233)
76 COG1474 CDC6 Cdc6-related prot 98.1 0.00022 4.7E-09 76.4 18.9 195 184-381 18-240 (366)
77 PRK08084 DNA replication initi 98.1 0.00011 2.3E-09 74.4 15.7 145 203-379 43-209 (235)
78 TIGR03420 DnaA_homol_Hda DnaA 98.1 4.8E-05 1E-09 76.8 13.4 160 189-381 23-203 (226)
79 PRK09376 rho transcription ter 98.1 4.1E-06 8.8E-11 87.8 5.4 101 194-298 158-268 (416)
80 KOG2028 ATPase related to the 98.1 8.3E-05 1.8E-09 75.4 14.1 155 199-374 156-331 (554)
81 PRK00440 rfc replication facto 98.0 0.00057 1.2E-08 73.1 21.6 173 184-377 18-201 (319)
82 PRK13341 recombination factor 98.0 6.9E-05 1.5E-09 87.1 14.5 166 184-374 29-212 (725)
83 PRK14956 DNA polymerase III su 98.0 0.0002 4.3E-09 78.1 16.6 186 183-376 18-219 (484)
84 PF13191 AAA_16: AAA ATPase do 98.0 8.2E-06 1.8E-10 79.6 5.5 48 185-234 2-51 (185)
85 PRK14957 DNA polymerase III su 98.0 0.00023 5E-09 79.8 17.2 175 183-379 16-221 (546)
86 PRK08691 DNA polymerase III su 98.0 0.00018 4E-09 81.5 16.2 174 183-378 16-219 (709)
87 TIGR00678 holB DNA polymerase 98.0 0.00025 5.4E-09 69.2 15.4 154 194-375 3-187 (188)
88 PRK09087 hypothetical protein; 97.9 9.9E-05 2.1E-09 73.8 12.5 133 205-378 44-194 (226)
89 PF00308 Bac_DnaA: Bacterial d 97.9 0.00037 8.1E-09 69.4 16.5 151 205-377 34-206 (219)
90 PRK07994 DNA polymerase III su 97.9 0.00028 6.1E-09 80.4 17.3 175 183-379 16-220 (647)
91 PRK14962 DNA polymerase III su 97.9 0.00023 4.9E-09 79.0 16.3 179 183-382 14-222 (472)
92 PRK14964 DNA polymerase III su 97.9 0.00028 6.1E-09 77.9 16.8 173 183-376 13-214 (491)
93 COG2255 RuvB Holliday junction 97.9 0.00016 3.5E-09 71.4 13.0 168 183-384 26-228 (332)
94 PRK07940 DNA polymerase III su 97.9 0.00039 8.4E-09 75.2 17.2 169 184-379 6-213 (394)
95 PRK14951 DNA polymerase III su 97.9 0.00031 6.6E-09 79.9 17.0 174 184-379 17-225 (618)
96 TIGR01242 26Sp45 26S proteasom 97.9 0.00012 2.6E-09 79.5 13.4 165 182-373 121-328 (364)
97 PTZ00202 tuzin; Provisional 97.9 0.00019 4.1E-09 75.9 13.8 158 180-346 259-433 (550)
98 PRK05642 DNA replication initi 97.9 0.00026 5.7E-09 71.4 14.5 143 205-379 45-208 (234)
99 PRK09112 DNA polymerase III su 97.9 0.00048 1E-08 73.5 16.8 190 182-380 22-241 (351)
100 PRK14958 DNA polymerase III su 97.9 0.0004 8.6E-09 78.0 16.9 173 183-377 16-218 (509)
101 PRK05896 DNA polymerase III su 97.8 0.00055 1.2E-08 76.8 17.3 178 183-381 16-223 (605)
102 PRK07471 DNA polymerase III su 97.8 0.00095 2.1E-08 71.6 18.5 188 182-379 18-238 (365)
103 KOG4341 F-box protein containi 97.8 1.2E-06 2.5E-11 90.3 -3.6 153 666-818 291-458 (483)
104 PRK14970 DNA polymerase III su 97.8 0.00099 2.1E-08 72.6 18.5 172 184-376 18-206 (367)
105 TIGR00767 rho transcription te 97.8 4.1E-05 8.9E-10 80.9 7.2 94 203-298 166-267 (415)
106 PRK14969 DNA polymerase III su 97.8 0.00066 1.4E-08 76.8 16.5 172 183-376 16-217 (527)
107 PHA02544 44 clamp loader, smal 97.8 0.00036 7.7E-09 74.5 13.8 138 183-344 21-170 (316)
108 KOG1909 Ran GTPase-activating 97.8 4.9E-06 1.1E-10 84.0 -0.5 190 564-753 90-310 (382)
109 TIGR02397 dnaX_nterm DNA polym 97.7 0.0015 3.2E-08 71.1 18.2 174 184-380 15-219 (355)
110 PF13855 LRR_8: Leucine rich r 97.7 2.5E-05 5.5E-10 60.2 3.0 11 691-701 23-33 (61)
111 PRK08451 DNA polymerase III su 97.7 0.0018 3.8E-08 72.4 18.6 175 184-379 15-218 (535)
112 PRK14959 DNA polymerase III su 97.7 0.001 2.2E-08 75.2 16.8 179 184-383 17-225 (624)
113 TIGR02903 spore_lon_C ATP-depe 97.7 0.0005 1.1E-08 79.3 14.5 195 183-381 154-397 (615)
114 COG0466 Lon ATP-dependent Lon 97.7 0.0056 1.2E-07 68.5 21.6 154 180-347 320-508 (782)
115 PRK09111 DNA polymerase III su 97.7 0.0013 2.7E-08 75.1 17.3 176 183-379 24-233 (598)
116 PRK14955 DNA polymerase III su 97.7 0.0011 2.3E-08 72.8 16.3 190 184-377 17-226 (397)
117 PF13855 LRR_8: Leucine rich r 97.7 3.8E-05 8.3E-10 59.1 3.5 58 693-752 1-60 (61)
118 PF05621 TniB: Bacterial TniB 97.7 0.0016 3.5E-08 66.2 15.9 182 192-377 46-259 (302)
119 PRK03992 proteasome-activating 97.6 0.00049 1.1E-08 75.0 12.9 163 183-372 131-336 (389)
120 PRK14952 DNA polymerase III su 97.6 0.0023 5E-08 72.6 18.3 179 183-382 13-223 (584)
121 PRK14950 DNA polymerase III su 97.6 0.0025 5.4E-08 73.4 18.7 175 183-378 16-220 (585)
122 PRK07764 DNA polymerase III su 97.6 0.0018 3.8E-08 76.6 17.6 172 184-376 16-218 (824)
123 PF14516 AAA_35: AAA-like doma 97.6 0.015 3.3E-07 62.0 23.3 194 181-386 9-246 (331)
124 PRK07133 DNA polymerase III su 97.6 0.0024 5.3E-08 73.4 17.9 175 183-378 18-218 (725)
125 PRK08903 DnaA regulatory inact 97.6 0.0013 2.9E-08 66.2 14.4 155 193-383 30-203 (227)
126 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00049 1.1E-08 82.2 12.8 174 183-372 187-389 (852)
127 PRK14087 dnaA chromosomal repl 97.6 0.00086 1.9E-08 74.3 13.8 159 205-381 141-321 (450)
128 KOG0989 Replication factor C, 97.6 0.00067 1.4E-08 67.9 11.3 177 183-375 36-226 (346)
129 KOG2543 Origin recognition com 97.6 0.00022 4.7E-09 73.4 7.9 158 182-346 5-192 (438)
130 PRK14088 dnaA chromosomal repl 97.6 0.0015 3.3E-08 72.3 15.2 152 205-376 130-302 (440)
131 KOG3665 ZYG-1-like serine/thre 97.5 7.8E-05 1.7E-09 86.3 4.9 148 669-818 122-281 (699)
132 PRK06620 hypothetical protein; 97.5 0.00093 2E-08 66.2 11.8 127 206-375 45-185 (214)
133 KOG0531 Protein phosphatase 1, 97.5 1.7E-05 3.7E-10 87.8 -0.9 33 743-776 234-266 (414)
134 PRK14971 DNA polymerase III su 97.5 0.0049 1.1E-07 70.9 18.7 171 184-377 18-220 (614)
135 TIGR00763 lon ATP-dependent pr 97.5 0.0077 1.7E-07 72.0 20.7 47 182-228 319-370 (775)
136 PRK14954 DNA polymerase III su 97.5 0.0052 1.1E-07 70.3 18.3 188 183-374 16-223 (620)
137 PRK06647 DNA polymerase III su 97.5 0.0047 1E-07 70.2 17.9 175 183-378 16-219 (563)
138 PRK06305 DNA polymerase III su 97.5 0.0046 1E-07 68.6 17.4 169 184-375 18-218 (451)
139 TIGR02881 spore_V_K stage V sp 97.4 0.0015 3.3E-08 67.3 12.6 24 204-227 41-64 (261)
140 TIGR02639 ClpA ATP-dependent C 97.4 0.00067 1.4E-08 80.5 11.0 148 184-347 183-358 (731)
141 PRK05563 DNA polymerase III su 97.4 0.0086 1.9E-07 68.4 18.8 172 183-377 16-218 (559)
142 PRK14953 DNA polymerase III su 97.4 0.0078 1.7E-07 67.3 18.0 174 184-379 17-220 (486)
143 PRK14948 DNA polymerase III su 97.4 0.0082 1.8E-07 69.1 18.6 187 184-379 17-222 (620)
144 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.3E-09 85.2 2.7 127 692-820 121-258 (699)
145 KOG4341 F-box protein containi 97.3 1.1E-05 2.4E-10 83.3 -4.6 231 591-825 138-385 (483)
146 CHL00181 cbbX CbbX; Provisiona 97.3 0.0054 1.2E-07 63.8 14.9 125 206-348 60-210 (287)
147 TIGR03689 pup_AAA proteasome A 97.3 0.0016 3.5E-08 72.3 11.7 147 184-347 183-378 (512)
148 PRK00149 dnaA chromosomal repl 97.3 0.0023 5E-08 71.6 12.7 150 205-376 148-319 (450)
149 PRK14086 dnaA chromosomal repl 97.3 0.018 3.9E-07 65.1 18.9 150 205-376 314-485 (617)
150 TIGR00362 DnaA chromosomal rep 97.2 0.0037 8E-08 69.1 13.7 150 205-376 136-307 (405)
151 smart00382 AAA ATPases associa 97.2 0.0011 2.3E-08 61.1 8.2 39 206-247 3-41 (148)
152 PRK14965 DNA polymerase III su 97.2 0.0083 1.8E-07 68.9 16.8 176 183-379 16-221 (576)
153 KOG1859 Leucine-rich repeat pr 97.2 8.5E-06 1.8E-10 89.5 -7.0 124 671-802 166-292 (1096)
154 KOG1859 Leucine-rich repeat pr 97.2 1.3E-05 2.9E-10 88.0 -5.5 109 667-783 185-296 (1096)
155 PRK10787 DNA-binding ATP-depen 97.2 0.04 8.7E-07 65.4 22.6 154 180-347 319-506 (784)
156 PRK07399 DNA polymerase III su 97.2 0.028 6.1E-07 59.2 19.3 189 184-379 5-221 (314)
157 TIGR02880 cbbX_cfxQ probable R 97.2 0.0064 1.4E-07 63.2 14.4 123 207-347 60-208 (284)
158 PRK05707 DNA polymerase III su 97.2 0.019 4.2E-07 60.8 17.8 88 285-379 105-203 (328)
159 PTZ00454 26S protease regulato 97.2 0.0042 9.1E-08 67.5 13.2 163 184-373 146-351 (398)
160 PRK12422 chromosomal replicati 97.2 0.021 4.5E-07 63.2 18.5 145 205-372 141-306 (445)
161 PF12799 LRR_4: Leucine Rich r 97.2 0.00038 8.2E-09 49.1 3.2 34 742-776 2-35 (44)
162 PRK08116 hypothetical protein; 97.2 0.0014 3.1E-08 67.3 8.7 98 206-320 115-221 (268)
163 PRK10865 protein disaggregatio 97.2 0.0019 4.2E-08 77.5 11.0 146 184-347 179-354 (857)
164 PRK11331 5-methylcytosine-spec 97.2 0.00087 1.9E-08 72.3 7.1 105 185-298 177-284 (459)
165 COG1373 Predicted ATPase (AAA+ 97.1 0.0068 1.5E-07 66.2 14.2 112 207-343 39-163 (398)
166 KOG2227 Pre-initiation complex 97.1 0.011 2.4E-07 62.8 14.7 166 180-348 147-339 (529)
167 COG3267 ExeA Type II secretory 97.1 0.023 5.1E-07 55.8 15.9 174 203-381 49-247 (269)
168 CHL00095 clpC Clp protease ATP 97.1 0.0017 3.8E-08 78.0 9.8 44 184-228 180-223 (821)
169 PF07728 AAA_5: AAA domain (dy 97.1 0.00056 1.2E-08 63.0 4.2 84 208-306 2-87 (139)
170 PRK08118 topology modulation p 97.0 0.00036 7.8E-09 66.3 2.7 35 206-241 2-37 (167)
171 PRK12608 transcription termina 97.0 0.0022 4.9E-08 67.6 8.6 104 193-298 121-232 (380)
172 KOG2004 Mitochondrial ATP-depe 97.0 0.0016 3.4E-08 72.3 7.6 103 181-297 409-516 (906)
173 PF12799 LRR_4: Leucine Rich r 97.0 0.00051 1.1E-08 48.4 2.6 37 618-654 1-37 (44)
174 COG1222 RPT1 ATP-dependent 26S 97.0 0.019 4.1E-07 59.1 14.4 174 184-384 152-372 (406)
175 PF05673 DUF815: Protein of un 97.0 0.0052 1.1E-07 60.6 10.0 46 183-228 27-75 (249)
176 PF10443 RNA12: RNA12 protein; 97.0 0.038 8.3E-07 59.0 17.1 190 188-385 1-284 (431)
177 CHL00176 ftsH cell division pr 97.0 0.0049 1.1E-07 71.0 11.3 161 184-371 184-386 (638)
178 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0036 7.9E-08 75.5 10.6 145 184-346 174-348 (852)
179 PRK11034 clpA ATP-dependent Cl 96.9 0.003 6.4E-08 74.1 9.4 148 184-346 187-361 (758)
180 KOG4579 Leucine-rich repeat (L 96.9 0.00013 2.7E-09 63.9 -1.8 109 670-783 28-140 (177)
181 TIGR01241 FtsH_fam ATP-depende 96.9 0.0066 1.4E-07 68.9 11.4 162 184-372 56-259 (495)
182 COG0593 DnaA ATPase involved i 96.9 0.033 7.1E-07 59.8 15.8 127 204-349 112-259 (408)
183 PF13177 DNA_pol3_delta2: DNA 96.8 0.028 6E-07 53.1 13.2 115 188-321 2-143 (162)
184 PTZ00361 26 proteosome regulat 96.8 0.0074 1.6E-07 66.1 10.5 142 184-348 184-368 (438)
185 PF00004 AAA: ATPase family as 96.8 0.0017 3.7E-08 59.1 4.6 21 208-228 1-21 (132)
186 PRK08769 DNA polymerase III su 96.8 0.069 1.5E-06 56.1 17.0 88 284-380 111-209 (319)
187 KOG0531 Protein phosphatase 1, 96.7 0.00021 4.6E-09 79.1 -1.7 174 612-799 89-265 (414)
188 TIGR02639 ClpA ATP-dependent C 96.7 0.02 4.3E-07 68.1 14.5 46 182-227 453-506 (731)
189 TIGR02640 gas_vesic_GvpN gas v 96.7 0.038 8.2E-07 56.9 14.5 43 206-254 22-64 (262)
190 PRK07261 topology modulation p 96.7 0.0031 6.8E-08 60.2 6.0 22 207-228 2-23 (171)
191 PF04665 Pox_A32: Poxvirus A32 96.6 0.0028 6.1E-08 62.9 5.4 36 205-243 13-48 (241)
192 PF13207 AAA_17: AAA domain; P 96.6 0.0014 3E-08 58.7 3.0 21 207-227 1-21 (121)
193 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0039 8.5E-08 63.2 6.5 54 204-259 68-122 (274)
194 KOG4579 Leucine-rich repeat (L 96.6 0.0002 4.3E-09 62.7 -2.7 79 669-750 53-132 (177)
195 PRK08058 DNA polymerase III su 96.5 0.078 1.7E-06 56.5 16.0 139 188-345 11-180 (329)
196 PRK06526 transposase; Provisio 96.5 0.011 2.5E-07 60.0 9.2 24 204-227 97-120 (254)
197 PRK06921 hypothetical protein; 96.5 0.0075 1.6E-07 61.9 7.8 39 204-244 116-154 (266)
198 PRK06090 DNA polymerase III su 96.5 0.24 5.2E-06 52.1 18.7 158 192-379 12-201 (319)
199 KOG1969 DNA replication checkp 96.5 0.0064 1.4E-07 67.9 7.3 76 203-298 324-399 (877)
200 CHL00195 ycf46 Ycf46; Provisio 96.5 0.11 2.3E-06 58.1 17.1 145 204-373 258-429 (489)
201 cd01120 RecA-like_NTPases RecA 96.5 0.0079 1.7E-07 56.9 7.3 40 207-249 1-40 (165)
202 PRK09183 transposase/IS protei 96.5 0.0086 1.9E-07 61.3 7.9 23 205-227 102-124 (259)
203 KOG0991 Replication factor C, 96.5 0.0066 1.4E-07 58.2 6.4 97 184-298 28-125 (333)
204 PRK06871 DNA polymerase III su 96.4 0.16 3.4E-06 53.6 17.0 85 284-376 105-200 (325)
205 PRK12377 putative replication 96.4 0.0098 2.1E-07 60.0 7.9 74 204-296 100-173 (248)
206 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0048 1E-07 64.9 5.3 48 182-229 50-102 (361)
207 PRK04132 replication factor C 96.3 0.095 2.1E-06 62.0 16.0 148 211-378 570-730 (846)
208 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0088 1.9E-07 60.7 6.9 54 203-256 17-73 (235)
209 PF01695 IstB_IS21: IstB-like 96.3 0.0076 1.7E-07 57.8 5.9 74 204-297 46-119 (178)
210 COG5238 RNA1 Ran GTPase-activa 96.3 0.0019 4.2E-08 63.3 1.6 195 586-781 87-318 (388)
211 PRK08181 transposase; Validate 96.2 0.015 3.2E-07 59.5 8.0 97 204-320 105-209 (269)
212 PRK09361 radB DNA repair and r 96.2 0.011 2.3E-07 59.6 6.9 57 194-254 11-68 (225)
213 KOG2228 Origin recognition com 96.2 0.047 1E-06 55.8 11.1 160 184-347 25-219 (408)
214 TIGR00602 rad24 checkpoint pro 96.2 0.035 7.5E-07 63.7 11.4 46 183-228 84-133 (637)
215 PRK10865 protein disaggregatio 96.2 0.85 1.8E-05 55.3 23.7 46 182-227 567-620 (857)
216 PF00448 SRP54: SRP54-type pro 96.2 0.019 4.2E-07 55.9 8.1 54 205-261 1-55 (196)
217 KOG2982 Uncharacterized conser 96.1 0.002 4.3E-08 64.0 1.1 203 589-797 69-287 (418)
218 TIGR01243 CDC48 AAA family ATP 96.1 0.069 1.5E-06 63.8 14.1 163 184-373 454-657 (733)
219 TIGR01243 CDC48 AAA family ATP 96.1 0.058 1.3E-06 64.4 13.5 164 184-374 179-382 (733)
220 cd01393 recA_like RecA is a b 96.1 0.023 5.1E-07 57.2 8.7 51 203-255 17-72 (226)
221 PRK07993 DNA polymerase III su 96.1 0.27 5.7E-06 52.4 16.7 169 192-377 11-202 (334)
222 KOG2739 Leucine-rich acidic nu 96.0 0.0035 7.5E-08 61.7 2.2 83 668-753 42-128 (260)
223 TIGR02237 recomb_radB DNA repa 96.0 0.01 2.2E-07 59.0 5.5 50 203-256 10-59 (209)
224 COG0542 clpA ATP-binding subun 96.0 0.023 4.9E-07 65.6 8.8 111 182-305 490-614 (786)
225 COG1618 Predicted nucleotide k 96.0 0.0053 1.2E-07 55.6 3.0 35 206-242 6-41 (179)
226 KOG0730 AAA+-type ATPase [Post 96.0 0.14 3.1E-06 57.1 14.3 118 203-349 466-617 (693)
227 PRK06696 uridine kinase; Valid 96.0 0.0079 1.7E-07 60.3 4.5 40 188-227 3-44 (223)
228 PLN00020 ribulose bisphosphate 95.9 0.019 4E-07 60.1 7.1 26 203-228 146-171 (413)
229 PRK11034 clpA ATP-dependent Cl 95.9 0.11 2.3E-06 61.4 14.1 45 183-227 458-510 (758)
230 PRK06835 DNA replication prote 95.9 0.017 3.7E-07 61.0 6.9 38 205-245 183-220 (329)
231 KOG1514 Origin recognition com 95.9 0.15 3.2E-06 57.4 14.1 133 182-317 395-546 (767)
232 KOG0744 AAA+-type ATPase [Post 95.9 0.029 6.2E-07 56.8 7.8 39 205-244 177-217 (423)
233 KOG0741 AAA+-type ATPase [Post 95.8 0.1 2.2E-06 56.5 12.1 141 203-369 536-704 (744)
234 PF02562 PhoH: PhoH-like prote 95.8 0.024 5.3E-07 55.1 7.0 128 189-322 6-158 (205)
235 TIGR02902 spore_lonB ATP-depen 95.8 0.13 2.9E-06 58.5 14.1 43 184-227 66-108 (531)
236 PRK07952 DNA replication prote 95.7 0.051 1.1E-06 54.8 9.2 97 205-319 99-204 (244)
237 KOG0735 AAA+-type ATPase [Post 95.7 0.1 2.2E-06 58.5 11.8 72 205-296 431-504 (952)
238 PRK06964 DNA polymerase III su 95.7 0.63 1.4E-05 49.5 17.5 85 285-380 131-226 (342)
239 KOG0728 26S proteasome regulat 95.7 0.21 4.6E-06 48.6 12.4 138 187-347 151-331 (404)
240 PRK04296 thymidine kinase; Pro 95.6 0.025 5.4E-07 55.1 6.2 108 206-321 3-117 (190)
241 TIGR03346 chaperone_ClpB ATP-d 95.6 0.2 4.3E-06 60.8 15.1 45 183-227 565-617 (852)
242 KOG0733 Nuclear AAA ATPase (VC 95.5 0.19 4.2E-06 55.4 13.0 91 184-297 191-293 (802)
243 COG0563 Adk Adenylate kinase a 95.5 0.012 2.6E-07 56.3 3.6 22 207-228 2-23 (178)
244 PF00485 PRK: Phosphoribulokin 95.5 0.0097 2.1E-07 58.3 3.1 21 207-227 1-21 (194)
245 KOG2982 Uncharacterized conser 95.5 0.019 4E-07 57.4 4.8 159 586-749 92-287 (418)
246 COG1484 DnaC DNA replication p 95.5 0.041 8.8E-07 56.1 7.6 76 203-297 103-178 (254)
247 KOG0731 AAA+-type ATPase conta 95.5 0.36 7.8E-06 55.7 15.6 168 183-376 311-521 (774)
248 PRK08939 primosomal protein Dn 95.5 0.076 1.7E-06 55.7 9.7 96 204-319 155-260 (306)
249 COG5238 RNA1 Ran GTPase-activa 95.5 0.0043 9.3E-08 60.9 0.4 40 614-653 88-132 (388)
250 KOG2739 Leucine-rich acidic nu 95.5 0.011 2.3E-07 58.3 3.1 81 668-750 64-152 (260)
251 PF13238 AAA_18: AAA domain; P 95.5 0.01 2.2E-07 53.6 2.8 21 208-228 1-21 (129)
252 cd02019 NK Nucleoside/nucleoti 95.4 0.011 2.4E-07 46.6 2.5 22 207-228 1-22 (69)
253 cd01394 radB RadB. The archaea 95.4 0.035 7.6E-07 55.5 6.6 53 194-249 7-60 (218)
254 PRK15455 PrkA family serine pr 95.4 0.013 2.8E-07 64.9 3.6 44 184-227 77-125 (644)
255 TIGR00235 udk uridine kinase. 95.3 0.014 3.1E-07 57.7 3.6 25 203-227 4-28 (207)
256 COG1223 Predicted ATPase (AAA+ 95.3 0.23 5.1E-06 48.8 11.5 142 183-347 121-297 (368)
257 PRK08233 hypothetical protein; 95.3 0.014 2.9E-07 56.6 3.4 23 205-227 3-25 (182)
258 KOG1644 U2-associated snRNP A' 95.3 0.03 6.6E-07 52.9 5.2 34 619-653 43-76 (233)
259 PRK07667 uridine kinase; Provi 95.3 0.024 5.2E-07 55.4 4.8 35 193-227 4-39 (193)
260 PRK05480 uridine/cytidine kina 95.3 0.015 3.3E-07 57.7 3.5 25 203-227 4-28 (209)
261 PF13604 AAA_30: AAA domain; P 95.3 0.065 1.4E-06 52.4 7.9 105 203-320 16-131 (196)
262 COG0470 HolB ATPase involved i 95.3 0.14 3E-06 54.9 11.2 116 186-319 4-148 (325)
263 KOG1644 U2-associated snRNP A' 95.2 0.029 6.2E-07 53.1 4.9 80 668-751 41-123 (233)
264 PLN03194 putative disease resi 95.2 0.00096 2.1E-08 62.4 -4.8 124 4-160 27-153 (187)
265 TIGR02858 spore_III_AA stage I 95.2 0.2 4.3E-06 51.4 11.4 125 192-321 98-230 (270)
266 TIGR02238 recomb_DMC1 meiotic 95.2 0.039 8.3E-07 58.0 6.3 68 193-261 83-154 (313)
267 TIGR03345 VI_ClpV1 type VI sec 95.1 0.1 2.2E-06 62.8 10.6 46 182-227 565-618 (852)
268 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.4E-07 53.5 3.1 21 207-227 1-21 (143)
269 PTZ00301 uridine kinase; Provi 95.1 0.017 3.6E-07 56.9 3.3 23 205-227 3-25 (210)
270 cd01131 PilT Pilus retraction 95.1 0.038 8.3E-07 54.2 5.8 106 206-320 2-109 (198)
271 CHL00095 clpC Clp protease ATP 95.1 0.13 2.8E-06 62.2 11.4 46 182-227 508-561 (821)
272 TIGR02012 tigrfam_recA protein 95.1 0.02 4.2E-07 59.9 3.9 46 203-251 53-98 (321)
273 KOG0733 Nuclear AAA ATPase (VC 95.1 0.29 6.2E-06 54.2 12.6 122 204-348 544-693 (802)
274 cd01122 GP4d_helicase GP4d_hel 95.1 0.18 3.9E-06 52.4 11.2 56 203-262 28-83 (271)
275 PRK09270 nucleoside triphospha 95.1 0.028 6E-07 56.7 4.9 32 196-227 24-55 (229)
276 PRK06762 hypothetical protein; 95.0 0.019 4.1E-07 54.7 3.2 23 205-227 2-24 (166)
277 KOG2123 Uncharacterized conser 95.0 0.0025 5.5E-08 62.7 -2.9 99 692-795 18-123 (388)
278 PRK05541 adenylylsulfate kinas 94.9 0.023 5.1E-07 54.6 3.6 33 203-237 5-37 (176)
279 cd00983 recA RecA is a bacter 94.9 0.027 5.9E-07 58.9 4.2 46 203-251 53-98 (325)
280 PF08423 Rad51: Rad51; InterP 94.9 0.061 1.3E-06 55.0 6.7 66 194-260 26-95 (256)
281 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.7E-07 55.5 3.4 24 204-227 2-25 (188)
282 COG0572 Udk Uridine kinase [Nu 94.9 0.022 4.8E-07 55.3 3.3 25 203-227 6-30 (218)
283 PRK09354 recA recombinase A; P 94.9 0.028 6E-07 59.3 4.2 56 193-251 46-103 (349)
284 TIGR02239 recomb_RAD51 DNA rep 94.8 0.061 1.3E-06 56.7 6.7 63 192-254 82-148 (316)
285 PLN03187 meiotic recombination 94.8 0.055 1.2E-06 57.3 6.4 63 194-256 114-180 (344)
286 KOG1947 Leucine rich repeat pr 94.8 0.009 2E-07 68.0 0.5 134 640-775 187-331 (482)
287 PRK06547 hypothetical protein; 94.8 0.025 5.4E-07 53.8 3.5 27 202-228 12-38 (172)
288 cd01130 VirB11-like_ATPase Typ 94.8 0.058 1.2E-06 52.4 6.1 24 204-227 24-47 (186)
289 KOG0738 AAA+-type ATPase [Post 94.8 0.32 6.9E-06 50.9 11.3 44 184-227 213-267 (491)
290 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.39 8.5E-06 44.7 11.0 114 206-323 3-141 (159)
291 KOG0743 AAA+-type ATPase [Post 94.7 0.53 1.2E-05 50.5 13.2 159 206-386 236-417 (457)
292 PRK03839 putative kinase; Prov 94.7 0.023 5E-07 54.9 3.0 22 207-228 2-23 (180)
293 TIGR03499 FlhF flagellar biosy 94.7 0.1 2.2E-06 54.3 7.9 40 204-245 193-233 (282)
294 KOG1947 Leucine rich repeat pr 94.7 0.011 2.5E-07 67.1 0.9 135 589-726 186-330 (482)
295 PRK06217 hypothetical protein; 94.7 0.053 1.1E-06 52.5 5.4 22 207-228 3-24 (183)
296 PRK04040 adenylate kinase; Pro 94.6 0.026 5.6E-07 54.7 3.1 23 205-227 2-24 (188)
297 PRK14722 flhF flagellar biosyn 94.6 0.11 2.4E-06 55.6 8.1 24 204-227 136-159 (374)
298 COG2812 DnaX DNA polymerase II 94.6 0.29 6.4E-06 54.4 11.5 178 184-374 17-215 (515)
299 KOG3864 Uncharacterized conser 94.6 0.0097 2.1E-07 56.2 0.1 81 694-774 102-185 (221)
300 COG1428 Deoxynucleoside kinase 94.6 0.053 1.2E-06 52.0 4.9 48 205-258 4-51 (216)
301 COG2607 Predicted ATPase (AAA+ 94.6 0.24 5.2E-06 48.3 9.3 110 184-320 61-183 (287)
302 cd03247 ABCC_cytochrome_bd The 94.6 0.15 3.2E-06 49.1 8.2 26 203-228 26-51 (178)
303 KOG0734 AAA+-type ATPase conta 94.5 0.42 9.1E-06 52.0 11.9 47 184-230 305-362 (752)
304 PF00910 RNA_helicase: RNA hel 94.4 0.023 5E-07 49.4 2.1 20 208-227 1-20 (107)
305 cd02023 UMPK Uridine monophosp 94.4 0.025 5.3E-07 55.7 2.5 21 207-227 1-21 (198)
306 PRK00625 shikimate kinase; Pro 94.3 0.029 6.3E-07 53.4 2.6 21 207-227 2-22 (173)
307 PTZ00035 Rad51 protein; Provis 94.3 0.13 2.8E-06 54.8 7.8 63 193-255 105-171 (337)
308 cd02025 PanK Pantothenate kina 94.3 0.026 5.7E-07 56.2 2.4 21 207-227 1-21 (220)
309 COG0468 RecA RecA/RadA recombi 94.3 0.12 2.7E-06 52.7 7.2 50 203-255 58-107 (279)
310 COG1936 Predicted nucleotide k 94.3 0.032 7E-07 51.5 2.7 20 207-226 2-21 (180)
311 cd02024 NRK1 Nicotinamide ribo 94.3 0.029 6.2E-07 54.0 2.5 22 207-228 1-22 (187)
312 PHA00729 NTP-binding motif con 94.3 0.057 1.2E-06 53.2 4.6 26 203-228 15-40 (226)
313 PF07726 AAA_3: ATPase family 94.3 0.023 5E-07 50.1 1.6 27 208-236 2-28 (131)
314 TIGR02322 phosphon_PhnN phosph 94.3 0.034 7.4E-07 53.6 3.1 23 206-228 2-24 (179)
315 cd03115 SRP The signal recogni 94.3 0.092 2E-06 50.3 6.0 21 207-227 2-22 (173)
316 KOG2123 Uncharacterized conser 94.2 0.0021 4.5E-08 63.3 -5.4 102 589-699 17-123 (388)
317 PRK10867 signal recognition pa 94.2 0.16 3.6E-06 55.6 8.4 25 203-227 98-122 (433)
318 PRK00889 adenylylsulfate kinas 94.2 0.043 9.4E-07 52.7 3.5 24 204-227 3-26 (175)
319 PRK08699 DNA polymerase III su 94.1 0.84 1.8E-05 48.4 13.4 62 285-346 112-184 (325)
320 PRK10751 molybdopterin-guanine 94.1 0.049 1.1E-06 51.5 3.7 24 204-227 5-28 (173)
321 PRK10463 hydrogenase nickel in 94.1 0.077 1.7E-06 54.4 5.4 26 202-227 101-126 (290)
322 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.032 6.9E-07 54.1 2.5 21 207-227 1-21 (183)
323 COG4608 AppF ABC-type oligopep 94.1 0.17 3.7E-06 50.7 7.5 91 203-297 37-138 (268)
324 KOG2035 Replication factor C, 94.1 3.1 6.8E-05 41.8 15.9 219 186-423 16-282 (351)
325 PLN03186 DNA repair protein RA 94.1 0.1 2.2E-06 55.4 6.4 69 192-261 109-181 (342)
326 TIGR01425 SRP54_euk signal rec 94.0 0.31 6.8E-06 53.1 10.1 25 203-227 98-122 (429)
327 TIGR03263 guanyl_kin guanylate 94.0 0.04 8.6E-07 53.2 3.0 22 206-227 2-23 (180)
328 PRK00131 aroK shikimate kinase 94.0 0.043 9.3E-07 52.6 3.3 24 204-227 3-26 (175)
329 TIGR00150 HI0065_YjeE ATPase, 94.0 0.07 1.5E-06 47.9 4.3 26 203-228 20-45 (133)
330 cd01121 Sms Sms (bacterial rad 94.0 0.16 3.4E-06 54.8 7.8 52 192-246 68-120 (372)
331 PF03193 DUF258: Protein of un 94.0 0.081 1.8E-06 49.2 4.8 35 190-228 24-58 (161)
332 PF03205 MobB: Molybdopterin g 94.0 0.043 9.3E-07 50.2 3.0 23 206-228 1-23 (140)
333 PRK12723 flagellar biosynthesi 94.0 0.15 3.3E-06 55.0 7.6 43 204-246 173-216 (388)
334 PRK12678 transcription termina 94.0 0.097 2.1E-06 58.0 6.1 100 194-298 405-515 (672)
335 COG3640 CooC CO dehydrogenase 94.0 0.073 1.6E-06 51.8 4.5 42 207-251 2-44 (255)
336 TIGR02236 recomb_radA DNA repa 93.9 0.16 3.4E-06 53.9 7.6 54 203-256 93-149 (310)
337 cd02028 UMPK_like Uridine mono 93.9 0.038 8.2E-07 53.2 2.6 21 207-227 1-21 (179)
338 KOG0739 AAA+-type ATPase [Post 93.9 0.71 1.5E-05 46.5 11.2 44 184-227 134-188 (439)
339 TIGR00554 panK_bact pantothena 93.9 0.064 1.4E-06 55.4 4.3 24 203-226 60-83 (290)
340 PF01583 APS_kinase: Adenylyls 93.9 0.056 1.2E-06 50.0 3.4 23 205-227 2-24 (156)
341 PRK10733 hflB ATP-dependent me 93.8 0.3 6.5E-06 57.1 10.2 119 206-347 186-335 (644)
342 PTZ00088 adenylate kinase 1; P 93.8 0.1 2.2E-06 52.2 5.5 21 207-227 8-28 (229)
343 PF12775 AAA_7: P-loop contain 93.8 0.058 1.3E-06 55.6 3.8 33 193-227 23-55 (272)
344 cd02020 CMPK Cytidine monophos 93.8 0.042 9E-07 50.9 2.5 21 207-227 1-21 (147)
345 PF11868 DUF3388: Protein of u 93.8 0.27 5.9E-06 44.4 7.3 80 202-314 51-140 (192)
346 cd00227 CPT Chloramphenicol (C 93.7 0.049 1.1E-06 52.3 3.0 22 206-227 3-24 (175)
347 PF00560 LRR_1: Leucine Rich R 93.7 0.035 7.7E-07 32.4 1.2 21 619-639 1-21 (22)
348 PRK00771 signal recognition pa 93.7 0.18 4E-06 55.4 7.6 26 203-228 93-118 (437)
349 COG1102 Cmk Cytidylate kinase 93.7 0.046 1E-06 49.8 2.4 22 207-228 2-23 (179)
350 TIGR00390 hslU ATP-dependent p 93.6 0.15 3.2E-06 54.9 6.6 45 183-227 12-69 (441)
351 PRK04301 radA DNA repair and r 93.6 0.18 3.9E-06 53.6 7.4 65 193-257 89-157 (317)
352 COG0542 clpA ATP-binding subun 93.6 0.06 1.3E-06 62.3 3.9 147 183-345 170-344 (786)
353 COG1124 DppF ABC-type dipeptid 93.6 0.055 1.2E-06 53.0 3.0 24 203-226 31-54 (252)
354 cd02021 GntK Gluconate kinase 93.6 0.046 1E-06 50.9 2.5 21 207-227 1-21 (150)
355 PRK13949 shikimate kinase; Pro 93.6 0.049 1.1E-06 51.8 2.7 22 206-227 2-23 (169)
356 PRK05800 cobU adenosylcobinami 93.6 0.24 5.2E-06 47.0 7.3 21 207-227 3-23 (170)
357 cd00071 GMPK Guanosine monopho 93.6 0.053 1.2E-06 49.5 2.8 21 207-227 1-21 (137)
358 PHA02774 E1; Provisional 93.5 0.26 5.6E-06 55.1 8.4 37 191-227 420-456 (613)
359 PRK00300 gmk guanylate kinase; 93.5 0.06 1.3E-06 53.3 3.3 24 204-227 4-27 (205)
360 TIGR02788 VirB11 P-type DNA tr 93.5 0.21 4.5E-06 52.8 7.6 108 204-318 143-251 (308)
361 PRK13947 shikimate kinase; Pro 93.5 0.049 1.1E-06 52.1 2.6 21 207-227 3-23 (171)
362 PRK05439 pantothenate kinase; 93.5 0.087 1.9E-06 54.9 4.6 25 203-227 84-108 (311)
363 TIGR01817 nifA Nif-specific re 93.5 1.6 3.4E-05 50.3 15.3 47 182-228 195-242 (534)
364 COG2019 AdkA Archaeal adenylat 93.5 0.064 1.4E-06 49.1 3.0 22 205-226 4-25 (189)
365 COG1066 Sms Predicted ATP-depe 93.5 0.13 2.8E-06 54.3 5.6 87 204-297 92-179 (456)
366 cd00820 PEPCK_HprK Phosphoenol 93.5 0.067 1.5E-06 45.9 3.0 23 204-226 14-36 (107)
367 PRK03846 adenylylsulfate kinas 93.5 0.068 1.5E-06 52.5 3.5 25 203-227 22-46 (198)
368 PRK10078 ribose 1,5-bisphospho 93.4 0.062 1.3E-06 52.2 3.0 22 206-227 3-24 (186)
369 PRK14530 adenylate kinase; Pro 93.4 0.06 1.3E-06 53.7 3.0 21 207-227 5-25 (215)
370 PF08477 Miro: Miro-like prote 93.3 0.065 1.4E-06 47.5 2.9 23 208-230 2-24 (119)
371 TIGR00073 hypB hydrogenase acc 93.3 0.096 2.1E-06 51.8 4.4 27 201-227 18-44 (207)
372 PLN02348 phosphoribulokinase 93.3 0.095 2E-06 55.9 4.5 32 196-227 40-71 (395)
373 PRK12597 F0F1 ATP synthase sub 93.3 0.17 3.6E-06 55.8 6.4 55 203-259 141-196 (461)
374 PRK14737 gmk guanylate kinase; 93.2 0.08 1.7E-06 51.2 3.5 24 204-227 3-26 (186)
375 PRK05057 aroK shikimate kinase 93.1 0.071 1.5E-06 50.9 3.0 23 205-227 4-26 (172)
376 cd01129 PulE-GspE PulE/GspE Th 93.1 0.28 6E-06 50.4 7.5 25 203-227 78-102 (264)
377 PRK12339 2-phosphoglycerate ki 93.1 0.077 1.7E-06 51.7 3.3 23 205-227 3-25 (197)
378 PF00560 LRR_1: Leucine Rich R 93.1 0.046 9.9E-07 31.9 1.0 18 695-713 2-19 (22)
379 COG0003 ArsA Predicted ATPase 93.1 0.13 2.9E-06 53.8 5.1 49 205-256 2-50 (322)
380 TIGR01420 pilT_fam pilus retra 93.0 0.24 5.2E-06 53.2 7.2 114 194-318 113-228 (343)
381 cd01135 V_A-ATPase_B V/A-type 93.0 0.24 5.3E-06 50.3 6.7 55 204-259 68-125 (276)
382 PRK06002 fliI flagellum-specif 93.0 0.25 5.3E-06 54.0 7.2 92 203-298 163-266 (450)
383 COG0194 Gmk Guanylate kinase [ 93.0 0.084 1.8E-06 49.6 3.1 24 205-228 4-27 (191)
384 PRK13948 shikimate kinase; Pro 93.0 0.081 1.8E-06 50.8 3.2 25 203-227 8-32 (182)
385 KOG1532 GTPase XAB1, interacts 93.0 0.067 1.5E-06 52.8 2.5 26 203-228 17-42 (366)
386 PRK11608 pspF phage shock prot 93.0 0.61 1.3E-05 49.7 10.1 44 184-227 7-51 (326)
387 cd02027 APSK Adenosine 5'-phos 93.0 0.066 1.4E-06 49.7 2.5 21 207-227 1-21 (149)
388 PRK10536 hypothetical protein; 92.9 0.14 3E-06 51.4 4.7 50 184-236 56-105 (262)
389 PRK11823 DNA repair protein Ra 92.9 0.29 6.4E-06 54.4 7.9 53 192-247 66-119 (446)
390 cd00464 SK Shikimate kinase (S 92.9 0.074 1.6E-06 49.7 2.8 20 208-227 2-21 (154)
391 PF00158 Sigma54_activat: Sigm 92.9 0.32 6.9E-06 46.1 7.1 42 186-227 2-44 (168)
392 PRK09280 F0F1 ATP synthase sub 92.9 0.21 4.6E-06 54.8 6.6 94 203-298 142-250 (463)
393 PRK14527 adenylate kinase; Pro 92.9 0.086 1.9E-06 51.4 3.3 25 204-228 5-29 (191)
394 PRK05703 flhF flagellar biosyn 92.9 0.28 6.1E-06 54.0 7.5 39 205-245 221-260 (424)
395 cd00544 CobU Adenosylcobinamid 92.9 0.4 8.7E-06 45.4 7.6 45 208-259 2-46 (169)
396 PF00154 RecA: recA bacterial 92.8 0.087 1.9E-06 55.0 3.3 47 203-252 51-97 (322)
397 PRK13975 thymidylate kinase; P 92.8 0.085 1.8E-06 51.7 3.2 22 206-227 3-24 (196)
398 TIGR01313 therm_gnt_kin carboh 92.8 0.065 1.4E-06 50.7 2.2 20 208-227 1-20 (163)
399 PLN02318 phosphoribulokinase/u 92.8 0.12 2.6E-06 57.8 4.5 25 203-227 63-87 (656)
400 PRK05201 hslU ATP-dependent pr 92.8 0.2 4.2E-06 54.0 5.9 46 182-227 14-72 (443)
401 COG0488 Uup ATPase components 92.8 0.11 2.4E-06 58.4 4.3 25 203-227 346-370 (530)
402 TIGR00959 ffh signal recogniti 92.7 0.24 5.1E-06 54.3 6.7 25 203-227 97-121 (428)
403 KOG0727 26S proteasome regulat 92.7 0.15 3.3E-06 49.7 4.4 45 184-228 156-212 (408)
404 TIGR00416 sms DNA repair prote 92.7 0.22 4.7E-06 55.4 6.4 53 191-246 79-132 (454)
405 TIGR00176 mobB molybdopterin-g 92.7 0.08 1.7E-06 49.4 2.5 21 207-227 1-21 (155)
406 PRK13531 regulatory ATPase Rav 92.7 0.11 2.5E-06 56.9 4.1 42 183-227 20-61 (498)
407 PRK12726 flagellar biosynthesi 92.6 0.34 7.4E-06 51.5 7.3 41 203-246 204-244 (407)
408 PRK11889 flhF flagellar biosyn 92.6 0.097 2.1E-06 55.7 3.3 24 204-227 240-263 (436)
409 PF13521 AAA_28: AAA domain; P 92.6 0.086 1.9E-06 49.9 2.8 20 208-227 2-21 (163)
410 PRK12727 flagellar biosynthesi 92.5 0.33 7.1E-06 54.0 7.3 24 204-227 349-372 (559)
411 KOG3347 Predicted nucleotide k 92.5 0.088 1.9E-06 47.1 2.4 34 205-246 7-40 (176)
412 PRK14738 gmk guanylate kinase; 92.5 0.12 2.6E-06 51.0 3.7 25 203-227 11-35 (206)
413 PRK08972 fliI flagellum-specif 92.5 0.25 5.3E-06 53.8 6.3 91 203-298 160-264 (444)
414 PF03266 NTPase_1: NTPase; In 92.5 0.092 2E-06 49.7 2.7 21 208-228 2-22 (168)
415 PF02374 ArsA_ATPase: Anion-tr 92.5 0.14 3E-06 53.8 4.3 46 206-254 2-47 (305)
416 PF00005 ABC_tran: ABC transpo 92.5 0.1 2.2E-06 47.7 3.0 25 204-228 10-34 (137)
417 PRK13946 shikimate kinase; Pro 92.5 0.093 2E-06 50.8 2.8 23 205-227 10-32 (184)
418 PRK09825 idnK D-gluconate kina 92.4 0.1 2.2E-06 50.0 3.0 22 206-227 4-25 (176)
419 PF03308 ArgK: ArgK protein; 92.4 0.19 4.2E-06 50.1 4.9 35 193-227 16-51 (266)
420 PF00625 Guanylate_kin: Guanyl 92.4 0.1 2.2E-06 50.5 3.1 29 205-235 2-30 (183)
421 PLN02200 adenylate kinase fami 92.4 0.11 2.4E-06 52.2 3.4 24 204-227 42-65 (234)
422 KOG0924 mRNA splicing factor A 92.4 0.59 1.3E-05 52.2 8.9 121 193-322 362-512 (1042)
423 PRK06995 flhF flagellar biosyn 92.3 0.46 1E-05 52.7 8.3 24 205-228 256-279 (484)
424 PF06309 Torsin: Torsin; Inte 92.3 0.2 4.4E-06 44.1 4.4 44 185-228 27-76 (127)
425 COG1126 GlnQ ABC-type polar am 92.3 0.11 2.4E-06 49.9 3.0 25 203-227 26-50 (240)
426 PF06745 KaiC: KaiC; InterPro 92.2 0.15 3.2E-06 51.4 4.1 51 203-257 17-67 (226)
427 PRK15453 phosphoribulokinase; 92.2 0.13 2.8E-06 52.3 3.5 25 203-227 3-27 (290)
428 TIGR01069 mutS2 MutS2 family p 92.2 0.55 1.2E-05 55.9 9.3 107 285-400 401-522 (771)
429 PRK09435 membrane ATPase/prote 92.2 0.27 5.8E-06 51.9 6.0 33 195-227 45-78 (332)
430 PF10662 PduV-EutP: Ethanolami 92.1 0.12 2.6E-06 46.9 2.9 23 206-228 2-24 (143)
431 PRK08356 hypothetical protein; 92.1 0.12 2.7E-06 50.5 3.3 22 205-226 5-26 (195)
432 PRK14526 adenylate kinase; Pro 92.1 0.41 8.9E-06 47.3 6.9 20 208-227 3-22 (211)
433 PRK14493 putative bifunctional 92.1 0.16 3.4E-06 52.3 4.2 36 206-245 2-37 (274)
434 COG0703 AroK Shikimate kinase 92.1 0.11 2.4E-06 48.6 2.7 22 206-227 3-24 (172)
435 PRK08927 fliI flagellum-specif 92.1 0.43 9.3E-06 52.2 7.5 90 203-297 156-259 (442)
436 COG0467 RAD55 RecA-superfamily 92.1 0.16 3.4E-06 52.3 4.2 52 203-259 21-72 (260)
437 PRK04182 cytidylate kinase; Pr 92.1 0.12 2.6E-06 49.8 3.0 21 207-227 2-22 (180)
438 cd04139 RalA_RalB RalA/RalB su 92.0 0.12 2.7E-06 48.6 3.1 22 207-228 2-23 (164)
439 COG0465 HflB ATP-dependent Zn 92.0 1.1 2.5E-05 50.6 10.9 52 180-231 147-209 (596)
440 cd03116 MobB Molybdenum is an 92.0 0.13 2.9E-06 48.1 3.2 22 206-227 2-23 (159)
441 TIGR03878 thermo_KaiC_2 KaiC d 92.0 0.26 5.6E-06 50.6 5.6 41 203-246 34-74 (259)
442 TIGR00064 ftsY signal recognit 92.0 0.14 3E-06 52.9 3.5 40 203-245 70-109 (272)
443 KOG0652 26S proteasome regulat 91.9 1.8 3.9E-05 42.7 10.6 43 184-226 172-226 (424)
444 PRK10416 signal recognition pa 91.9 0.14 3E-06 54.1 3.5 25 203-227 112-136 (318)
445 COG0237 CoaE Dephospho-CoA kin 91.9 0.14 3E-06 49.9 3.2 22 205-226 2-23 (201)
446 TIGR01039 atpD ATP synthase, F 91.8 0.38 8.3E-06 52.6 6.8 94 203-298 141-249 (461)
447 COG1763 MobB Molybdopterin-gua 91.8 0.1 2.3E-06 48.5 2.2 23 205-227 2-24 (161)
448 COG0541 Ffh Signal recognition 91.8 17 0.00038 39.3 18.7 57 203-262 98-155 (451)
449 PTZ00185 ATPase alpha subunit; 91.8 0.4 8.6E-06 52.8 6.8 45 204-249 188-238 (574)
450 PF13245 AAA_19: Part of AAA d 91.8 0.16 3.5E-06 40.7 3.0 22 204-225 9-30 (76)
451 PF00006 ATP-synt_ab: ATP synt 91.8 0.28 6E-06 48.4 5.3 60 195-259 5-65 (215)
452 PRK05022 anaerobic nitric oxid 91.8 1.1 2.4E-05 51.0 11.0 46 183-228 187-233 (509)
453 TIGR01040 V-ATPase_V1_B V-type 91.8 0.35 7.7E-06 52.7 6.4 94 204-297 140-258 (466)
454 TIGR02173 cyt_kin_arch cytidyl 91.7 0.13 2.9E-06 49.0 3.0 21 207-227 2-22 (171)
455 COG0464 SpoVK ATPases of the A 91.7 2 4.4E-05 48.9 13.0 123 203-348 274-424 (494)
456 PLN02165 adenylate isopentenyl 91.7 0.15 3.2E-06 53.4 3.4 26 202-227 40-65 (334)
457 PF01926 MMR_HSR1: 50S ribosom 91.7 0.14 3.1E-06 45.2 2.9 21 208-228 2-22 (116)
458 TIGR03877 thermo_KaiC_1 KaiC d 91.7 0.5 1.1E-05 47.9 7.2 60 193-257 8-68 (237)
459 cd01672 TMPK Thymidine monopho 91.7 0.13 2.8E-06 50.5 2.9 22 207-228 2-23 (200)
460 COG1116 TauB ABC-type nitrate/ 91.7 0.14 3.1E-06 50.6 3.0 25 203-227 27-51 (248)
461 PRK08149 ATP synthase SpaL; Va 91.6 0.63 1.4E-05 50.8 8.2 91 203-298 149-253 (428)
462 COG0378 HypB Ni2+-binding GTPa 91.6 0.21 4.5E-06 47.3 3.9 49 205-255 13-61 (202)
463 PLN02796 D-glycerate 3-kinase 91.6 0.16 3.5E-06 53.4 3.5 24 204-227 99-122 (347)
464 COG5635 Predicted NTPase (NACH 91.6 0.14 3.1E-06 61.8 3.6 190 205-400 222-449 (824)
465 PRK05973 replicative DNA helic 91.5 0.36 7.8E-06 48.3 5.8 51 203-258 62-112 (237)
466 PRK01184 hypothetical protein; 91.5 0.14 3.1E-06 49.5 3.0 20 206-226 2-21 (184)
467 TIGR03305 alt_F1F0_F1_bet alte 91.5 0.36 7.9E-06 52.8 6.3 94 203-298 136-244 (449)
468 PRK05922 type III secretion sy 91.5 0.5 1.1E-05 51.6 7.3 91 203-298 155-259 (434)
469 PRK08099 bifunctional DNA-bind 91.5 0.14 3E-06 55.9 3.0 25 203-227 217-241 (399)
470 cd01428 ADK Adenylate kinase ( 91.5 0.14 2.9E-06 50.1 2.8 20 208-227 2-21 (194)
471 PF13086 AAA_11: AAA domain; P 91.5 0.22 4.9E-06 50.1 4.5 52 207-259 19-75 (236)
472 PRK14532 adenylate kinase; Pro 91.5 0.14 3E-06 49.8 2.8 20 208-227 3-22 (188)
473 PRK06761 hypothetical protein; 91.4 0.15 3.2E-06 52.4 3.0 23 206-228 4-26 (282)
474 TIGR03574 selen_PSTK L-seryl-t 91.4 0.12 2.7E-06 52.8 2.5 21 207-227 1-21 (249)
475 PRK03731 aroL shikimate kinase 91.4 0.14 2.9E-06 49.0 2.7 22 206-227 3-24 (171)
476 KOG0736 Peroxisome assembly fa 91.4 0.41 8.9E-06 54.5 6.5 71 205-298 705-776 (953)
477 PRK13768 GTPase; Provisional 91.4 0.16 3.4E-06 51.9 3.2 23 205-227 2-24 (253)
478 PRK06067 flagellar accessory p 91.4 0.42 9.2E-06 48.3 6.3 60 193-257 12-72 (234)
479 COG1100 GTPase SAR1 and relate 91.4 0.14 3E-06 51.2 2.8 23 206-228 6-28 (219)
480 PF00437 T2SE: Type II/IV secr 91.3 0.33 7.2E-06 50.3 5.6 115 192-318 113-230 (270)
481 KOG1051 Chaperone HSP104 and r 91.3 1 2.2E-05 53.3 10.0 44 183-226 562-612 (898)
482 cd04155 Arl3 Arl3 subfamily. 91.3 0.23 5E-06 47.3 4.2 26 203-228 12-37 (173)
483 KOG0729 26S proteasome regulat 91.3 0.88 1.9E-05 44.9 7.8 43 185-227 179-233 (435)
484 cd02022 DPCK Dephospho-coenzym 91.2 0.14 3E-06 49.3 2.5 21 207-227 1-21 (179)
485 smart00173 RAS Ras subfamily o 91.2 0.18 3.8E-06 47.7 3.2 22 207-228 2-23 (164)
486 cd01124 KaiC KaiC is a circadi 91.1 0.2 4.3E-06 48.6 3.6 45 207-256 1-45 (187)
487 COG0529 CysC Adenylylsulfate k 91.1 0.21 4.6E-06 46.3 3.4 25 203-227 21-45 (197)
488 cd04119 RJL RJL (RabJ-Like) su 91.1 0.17 3.6E-06 47.9 2.9 21 208-228 3-23 (168)
489 PRK09099 type III secretion sy 91.1 0.46 9.9E-06 52.1 6.5 92 203-298 161-265 (441)
490 PRK14531 adenylate kinase; Pro 91.1 0.17 3.8E-06 48.9 3.0 21 207-227 4-24 (183)
491 cd03225 ABC_cobalt_CbiO_domain 91.1 0.17 3.7E-06 50.3 3.1 25 203-227 25-49 (211)
492 PF10236 DAP3: Mitochondrial r 91.1 6.8 0.00015 41.3 15.1 49 328-376 258-306 (309)
493 cd01983 Fer4_NifH The Fer4_Nif 91.1 0.16 3.5E-06 42.8 2.5 21 207-227 1-21 (99)
494 PRK11388 DNA-binding transcrip 91.1 4.8 0.0001 47.5 15.6 46 183-228 325-371 (638)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.1 0.17 3.6E-06 50.6 3.0 25 203-227 28-52 (218)
496 PRK14721 flhF flagellar biosyn 91.0 0.74 1.6E-05 50.3 8.0 24 204-227 190-213 (420)
497 cd03222 ABC_RNaseL_inhibitor T 91.0 0.19 4E-06 48.1 3.1 25 203-227 23-47 (177)
498 PF03029 ATP_bind_1: Conserved 91.0 0.13 2.8E-06 51.9 2.0 34 210-246 1-34 (238)
499 PRK04220 2-phosphoglycerate ki 91.0 0.28 6E-06 50.7 4.4 25 203-227 90-114 (301)
500 cd01862 Rab7 Rab7 subfamily. 91.0 0.17 3.7E-06 48.1 2.9 22 207-228 2-23 (172)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-71 Score=641.37 Aligned_cols=718 Identities=21% Similarity=0.262 Sum_probs=477.7
Q ss_pred HHHHHHhhhhccc-hhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCchhhhcchH
Q 003321 17 KMLISICRRSSLC-KSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKVLASTRWNVYKNLQ 95 (830)
Q Consensus 17 ~~l~s~~~~~~~~-~~~~~~l~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~ld~~~~~~~~~~~ 95 (830)
+++.+++.+++.+ .+....+ ..+++.+..++.+++ +++..+........|.+.+++.+|+++|.++.+.....+. +
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i-~~Lk~~L~~l~~~l~-d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~-~ 86 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYI-LELKENLKALQSALE-DLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIER-K 86 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3444455555533 3333344 899999999999998 7777777778899999999999999999998776544221 0
Q ss_pred HHHHHHHHHHHhhhhhccccchhhhhhhhhhHHhhhhHHhhhHHH----HHHHHHHhhccccccCCCCcchhhhhhhhhh
Q 003321 96 LARKMEKLEKKVSRFLNGPMQAHVLADVHHMRFETAERFDRMEGS----ARRLEQRLGAMRIGVGGGGWVDEAVKRVEME 171 (830)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (830)
....+.......++.. .. ..+.+....+..+..+ .+.++.....-.+... +.+. . . .+.
T Consensus 87 ~~~~l~~~~~~~~~~c-~~----------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~-~~~~-~-~---~~~ 149 (889)
T KOG4658|consen 87 ANDLLSTRSVERQRLC-LC----------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV-GESL-D-P---REK 149 (889)
T ss_pred HhHHhhhhHHHHHHHh-hh----------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc-cccc-c-c---hhh
Confidence 1111110000111111 00 1122222222222211 1222222111101111 0000 0 0 000
Q ss_pred hhhhhcCC-CCcccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc-cccccCCceEEEEecCCCC
Q 003321 172 EDTLAEGG-LGNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVSQSPN 249 (830)
Q Consensus 172 ~~~~~~~~-~~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~~~~~ 249 (830)
..+.+ ..... ||.+..++++.+.|.+.+. .+++|+||||+||||||+.++|+.. ++++|+..+ ||.||+.++
T Consensus 150 ---~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~i-WV~VSk~f~ 223 (889)
T KOG4658|consen 150 ---VETRPIQSESD-VGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVI-WVVVSKEFT 223 (889)
T ss_pred ---cccCCCCcccc-ccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEE-EEEEccccc
Confidence 00111 11112 9999999999999996544 9999999999999999999999988 999998655 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccc-hHHHHhhcCCcEEEEEeCCCChHhHHHhhhcCC----CceEEEEecccccc-
Q 003321 250 VEQLRAKVWGFVSGCDSMEPNYVIPHW-NLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVP----GCKTLVVSRFKFST- 323 (830)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~----gs~iivTtr~~~~~- 323 (830)
...++++|++.++.............. ..+.+.+.+|||+|||||||+..+|+.+...+| ||+|++|||++.|+
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 999999999988764432222222222 334555699999999999999999999998776 79999999999987
Q ss_pred ---cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCC-hHHHHHHHHHhc
Q 003321 324 ---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP-EMYWTSAKKRLS 399 (830)
Q Consensus 324 ---~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~-~~~w~~~l~~l~ 399 (830)
+....++++.|+.+|||.||++.||..........+++|++|+++|+|+|||+.++|+.|+.+. ..+|+++.+.+.
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 3356799999999999999999998875444344788999999999999999999999999885 668999999887
Q ss_pred cCCCC-cccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCH--------HHHHHHHHHH
Q 003321 400 KGEPI-CESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDE--------EEAFAILVEL 470 (830)
Q Consensus 400 ~~~~~-~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~--------~~~~~~l~~L 470 (830)
+.... .....+.+.++|++||+.||+++|.||+|||+||+||.|+++.||..|+|+|++.+ ++|+.|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 65222 22336789999999999999999999999999999999999999999999997754 6899999999
Q ss_pred hhhhhHHHHhhhhccCCcccccccccchhhHHHHHHHHHhhccCCccccceeeecc-CCCCCchhhhhhcCCCccceEEE
Q 003321 471 SDRNLLKIVKDARRAGDMYSSYYEISVTQHDVLRDLALHLSNQENINDRKRLLMPR-RDTELPKEWERNVDQPFNAQIVS 549 (830)
Q Consensus 471 ~~r~l~~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~e~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ls 549 (830)
++++|+...... +. ..+|+|||+|||+|.+++++.+......+.... .-...+ +.......|+++
T Consensus 464 V~~~Ll~~~~~~---~~------~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~-----~~~~~~~~rr~s 529 (889)
T KOG4658|consen 464 VRASLLIEERDE---GR------KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP-----QVKSWNSVRRMS 529 (889)
T ss_pred HHHHHHhhcccc---cc------eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc-----cccchhheeEEE
Confidence 999999865422 11 136999999999999999954442222222111 000011 111223468888
Q ss_pred eeeCCcccccccccCCCceEEEEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeeccc
Q 003321 550 IHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKV 628 (830)
Q Consensus 550 i~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 628 (830)
+..+...... ....+|++++|.+..+......++ ..|..|+.||+|+++++.... .-+..+++|-+||||+++++
T Consensus 530 ~~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~---~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 530 LMNNKIEHIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS---KLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred Eeccchhhcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC---cCChHHhhhhhhhcccccCC
Confidence 8776543332 234566777776655432123344 447789999999998754221 22345788999999999999
Q ss_pred ccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceecccccc-cc-CccccccCCCCCCCEEEeeCcCC-
Q 003321 629 SISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCD-DL-MKLPPSICGLQSLKNLSVTNCHS- 705 (830)
Q Consensus 629 ~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l-~~lp~~i~~l~~L~~L~L~~c~~- 705 (830)
.++.+|.++.+|+.|.+|++..+...... +.....+++|++|.+.... .. ...-..+.+|.+|+.|....+..
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccc----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 99999999999999999999877654444 2333457888888876543 11 11112234555555555433221
Q ss_pred ------------------------CCccchhcCCCCCCCEEEcccCCCCCccchhh-----c-CCCCCcEeccccccccC
Q 003321 706 ------------------------LQELPADIGKMKSLQILRLYACPHLRTLPARI-----C-ELVCLKYLNISQCVSLS 755 (830)
Q Consensus 706 ------------------------l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-----~-~l~~L~~L~L~~c~~l~ 755 (830)
....+..++.+.+|+.|.+.+|...+...... . .+++|..+.+.+|....
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 12233455666777777777766543221110 0 12333334444443333
Q ss_pred cchhhhccCCCCcEEeccCccCCccCCc
Q 003321 756 CLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 756 ~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
.+ .+..-.++|+.|++..|+.+..+..
T Consensus 762 ~l-~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 762 DL-TWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cc-chhhccCcccEEEEecccccccCCC
Confidence 22 2233456777777777775554443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-71 Score=679.68 Aligned_cols=725 Identities=22% Similarity=0.284 Sum_probs=500.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 003321 4 TDLFAGEIAAELLKMLISICRRSSLCKSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKVL 83 (830)
Q Consensus 4 ~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~l~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~l 83 (830)
.++|+|+...++.+.++|++.+++..+|+. .+...+.+..+.-...+..-+++-|-|+...+..|
T Consensus 13 ~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~---------------~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 13 YDVFPSFSGEDVRITFLSHFLKELDRKLII---------------AFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CcEEeeCCCcccccCHHHHHHHHHHHCCCe---------------EEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 478888888999999999999887655532 12221112222233456666677777888889999
Q ss_pred cCCchhhhcchHHHHHHHHHHHHhhhhhccccchhh-hhhhhhhHHhhhhHHhhhHH--HHHHHHHHhhccccccCCCCc
Q 003321 84 ASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEG--SARRLEQRLGAMRIGVGGGGW 160 (830)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~ 160 (830)
+++.||+ .|++++++|.++... ...|++|.| |+||+++.+.++++|.+++. ..+++++|++|+....+.+||
T Consensus 78 a~s~wcl---~el~~i~~~~~~~~~--~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~ 152 (1153)
T PLN03210 78 ASSSWCL---NELLEIVRCKEELGQ--LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY 152 (1153)
T ss_pred ccchHHH---HHHHHHHHhhhhcCc--eEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCce
Confidence 9999999 789999999776543 446999999 99999999999999998864 347899999998855555554
Q ss_pred c-----hhhhhhhhhhhhh----hhcCCCCcccccccchhhHHHHHHHh-cCCCceEEEEEcCCCChHHHHHHHHhcccc
Q 003321 161 V-----DEAVKRVEMEEDT----LAEGGLGNLMGIGMALGKNKVKEMVI-GRDDLSVLGICGIGGSGKTTLALEVCRDHQ 230 (830)
Q Consensus 161 ~-----~~~~~~~~~~~~~----~~~~~~~~~~~vgr~~~~~~l~~~L~-~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~ 230 (830)
. .++........++ ..+.+.....+||++..++++..+|. +.+++++|+||||||+||||||+++|+ +
T Consensus 153 ~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~ 230 (1153)
T PLN03210 153 HSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--R 230 (1153)
T ss_pred ecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--H
Confidence 3 2322111111111 11122334578999999999999884 347899999999999999999999995 6
Q ss_pred cccccCCceEEEE---ecCC-----------CC-HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCC
Q 003321 231 VTSYFNNRILFLT---VSQS-----------PN-VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDV 295 (830)
Q Consensus 231 ~~~~F~~~~~wv~---v~~~-----------~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv 295 (830)
+..+|+..+ |+. ++.. ++ ...++++++..+....... ........+.+.++|+|||||||
T Consensus 231 l~~~F~g~v-fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~----~~~~~~~~~~L~~krvLLVLDdv 305 (1153)
T PLN03210 231 LSRQFQSSV-FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK----IYHLGAMEERLKHRKVLIFIDDL 305 (1153)
T ss_pred HhhcCCeEE-EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc----cCCHHHHHHHHhCCeEEEEEeCC
Confidence 778898766 542 1111 01 1234555555554332211 11223445567899999999999
Q ss_pred CChHhHHHhhhc----CCCceEEEEecccccc---cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH
Q 003321 296 WSLAVLEQLIFR----VPGCKTLVVSRFKFST---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKK 368 (830)
Q Consensus 296 ~~~~~~~~l~~~----~~gs~iivTtr~~~~~---~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~ 368 (830)
|+.++|+.+... .+||+||||||++.++ ....+|+++.|+.++||+||+++||++..+ +....+++++|+++
T Consensus 306 ~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 306 DDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALR 384 (1153)
T ss_pred CCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHH
Confidence 999999998763 4799999999999876 356899999999999999999999987654 34466799999999
Q ss_pred cCCchHHHHHHHHHhcCCChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCCh-hHHHHHhhhCCCCCCCccCHHH
Q 003321 369 CKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPK-KVKECFLDLGSFPEDKKIPLEV 447 (830)
Q Consensus 369 c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~ 447 (830)
|+|+|||++++|++|++++..+|+.+++++.... +.++.++|++||++|++ ..|.||+++|+||.+..+ .
T Consensus 385 c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~ 455 (1153)
T PLN03210 385 AGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---N 455 (1153)
T ss_pred hCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---H
Confidence 9999999999999999999999999999987532 45799999999999986 599999999999998765 3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhhHHHHhhhhccCCcccccccccchhhHHHHHHHHHhhccCC--ccccceeeec
Q 003321 448 LINMWVEIHDLDEEEAFAILVELSDRNLLKIVKDARRAGDMYSSYYEISVTQHDVLRDLALHLSNQEN--INDRKRLLMP 525 (830)
Q Consensus 448 Li~~Wia~~~~~~~~~~~~l~~L~~r~l~~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~e~--~~~~~~l~~~ 525 (830)
.+..|++.++...+. .++.|++++|++... ..+.|||++|+||+++++++. ++++.+++.+
T Consensus 456 ~v~~~l~~~~~~~~~---~l~~L~~ksLi~~~~--------------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~ 518 (1153)
T PLN03210 456 DIKLLLANSDLDVNI---GLKNLVDKSLIHVRE--------------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA 518 (1153)
T ss_pred HHHHHHHhcCCCchh---ChHHHHhcCCEEEcC--------------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence 477888877665443 488999999997532 147999999999999988764 4566677655
Q ss_pred cCCCCCchhhhhhcCCCccceEEEeeeCCccccccccc---CCCceEEEEeeCcc-----CcccccChhhhhcc-cCceE
Q 003321 526 RRDTELPKEWERNVDQPFNAQIVSIHTGDMREMDWFRM---EFPKAEVLILNFSS-----TEEYFLPPFIENME-KLRAL 596 (830)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~lsi~~~~~~~~~~~~~---~~~~~~~l~l~~~~-----~~~~~lp~~i~~l~-~Lr~L 596 (830)
.+.. .....+. ....++.+++....+.++..... .+++++.|.+.... .....+|..+..++ +||.|
T Consensus 519 ~di~---~vl~~~~-g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 519 KDIC---DVLEDNT-GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred HHHH---HHHHhCc-ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 3221 1111111 12235555655444443332211 23455555553321 11234566666664 68888
Q ss_pred EEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceecc
Q 003321 597 IVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTF 676 (830)
Q Consensus 597 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 676 (830)
.+.++..... +.-..+.+|+.|++.++.+..+|..+..+++|+.|++++|.....++. ...+++|+.|+|
T Consensus 595 ~~~~~~l~~l-----P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L 664 (1153)
T PLN03210 595 RWDKYPLRCM-----PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKL 664 (1153)
T ss_pred EecCCCCCCC-----CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEe
Confidence 8876643222 111245788888888888888888888888888888887654433332 234677888888
Q ss_pred ccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhc------------------
Q 003321 677 DHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARIC------------------ 738 (830)
Q Consensus 677 ~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~------------------ 738 (830)
.+|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|....
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc
Confidence 8887777788777788888888888777777777655 566777777766654433331100
Q ss_pred --------------------------------CCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCcccc
Q 003321 739 --------------------------------ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVN 786 (830)
Q Consensus 739 --------------------------------~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~ 786 (830)
.+++|+.|+|++|+.+..+|..++++++|+.|+|++|..++.+|..+
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 01244555555555555566666666666666666665555555543
Q ss_pred ccccCceeecCc
Q 003321 787 SLKSLRQVICEE 798 (830)
Q Consensus 787 ~l~~L~~l~~~~ 798 (830)
++++|+.|++++
T Consensus 823 ~L~sL~~L~Ls~ 834 (1153)
T PLN03210 823 NLESLESLDLSG 834 (1153)
T ss_pred CccccCEEECCC
Confidence 344444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-41 Score=356.27 Aligned_cols=273 Identities=33% Similarity=0.523 Sum_probs=211.1
Q ss_pred cchhhHHHHHHHhc-CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC
Q 003321 188 MALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS 266 (830)
Q Consensus 188 r~~~~~~l~~~L~~-~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 266 (830)
|+.++++|.+.|.+ .++.++|+|+||||+||||||+++|++..++.+|+ .++|+++++..+..+++..|+..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 67889999999986 37899999999999999999999998777999995 56799999999999999999999976632
Q ss_pred CC--CCCCcccchHHHHhhcCCcEEEEEeCCCChHhHHHhhhcC----CCceEEEEeccccccc----ccceEEccCCCH
Q 003321 267 ME--PNYVIPHWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRV----PGCKTLVVSRFKFSTV----LNDTYEVELLRE 336 (830)
Q Consensus 267 ~~--~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~----~gs~iivTtr~~~~~~----~~~~~~l~~L~~ 336 (830)
.. ..+.........+.+.++++||||||||+...|+.+.... .||+||||||+..++. ....|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 21 1222223344455568889999999999999997776533 4899999999998762 256899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCC-ChHHHHHHHHHhccCCCCcccchhhHHHH
Q 003321 337 DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQ-PEMYWTSAKKRLSKGEPICESHENNLLDR 415 (830)
Q Consensus 337 ~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 415 (830)
+||++||++.++..........++.+++|+++|+|+||||+++|++|+.+ +..+|+++++.+.............+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876522233345689999999999999999999999654 57889999988776543222246789999
Q ss_pred HHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHH
Q 003321 416 MAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEE 461 (830)
Q Consensus 416 l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~ 461 (830)
+.+||+.||++.|+||+|||+||+++.|+++.|+++|+++|++.+.
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999877643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2.2e-18 Score=212.77 Aligned_cols=230 Identities=20% Similarity=0.216 Sum_probs=110.9
Q ss_pred CCCceEEEEeeCccCcccccChhhh-hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccC
Q 003321 564 EFPKAEVLILNFSSTEEYFLPPFIE-NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLK 641 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~lp~~i~-~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~ 641 (830)
.+++++.|.+..+.. ...+|..+. .+++||+|++.++....... ...+++|++|+|++|.+. .+|..+..++
T Consensus 91 ~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 91 RLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-----RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccC-----ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 356666666554432 224554443 77777777776654321110 123455555555555554 4444555555
Q ss_pred CCceEEeeecccccccccccc--------------------CcCCCCCccceeccccccccCccccccCCCCCCCEEEee
Q 003321 642 KMQKISFVLCKINNSLDQSVV--------------------DLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVT 701 (830)
Q Consensus 642 ~L~~L~l~~~~~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~ 701 (830)
+|++|++++|.+....+..+. .....+++|+.|++++|.....+|..++++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 555555555544333222211 111223444444444444333444444444445555554
Q ss_pred CcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccC
Q 003321 702 NCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 781 (830)
Q Consensus 702 ~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 781 (830)
+|.....+|..++++++|+.|++++|.....+|..+..+++|++|++++|.....+|..+.++++|+.|++++|.....+
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 44433344444444555555555444444444444555555555555544443444444555555555555555544445
Q ss_pred CccccccccCceeecCch
Q 003321 782 PKSVNSLKSLRQVICEED 799 (830)
Q Consensus 782 p~~~~~l~~L~~l~~~~~ 799 (830)
|..+.++++|+.|++.+|
T Consensus 325 ~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSN 342 (968)
T ss_pred ChhHhcCCCCCEEECcCC
Confidence 555555555555555444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=9e-18 Score=207.36 Aligned_cols=227 Identities=19% Similarity=0.191 Sum_probs=143.6
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L 643 (830)
+++++.|.+..+.. ...+|..++++++|++|++.++..... ....+.++++|++|++++|.+. .+|..+..+++|
T Consensus 139 l~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGK---IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCccccc---CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 45566665544432 235666677777777777766543221 1223566777777777777665 466667777777
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 723 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 723 (830)
++|+++.|.+...++..+ ..+++|++|++++|.....+|..++++++|++|++++|.....+|..+.++++|+.|+
T Consensus 215 ~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cEEECcCCccCCcCChhH----hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 777777666554333332 3466677777777655556666677777777777776665555666666677777777
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
+++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 7766655566666666667777777666555566666666666666666666655566666666666666666544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=9.7e-17 Score=198.17 Aligned_cols=122 Identities=30% Similarity=0.504 Sum_probs=62.0
Q ss_pred eccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccc
Q 003321 674 LTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVS 753 (830)
Q Consensus 674 L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 753 (830)
|++++|..+..+|.+++++++|+.|+|++|..+..+|..+ ++++|+.|++++|..+..+|.. .++|++|+|++ +.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~ 857 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TG 857 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC-CC
Confidence 3333333333344444444444444444444444444333 3444444444444444333321 23344444444 23
Q ss_pred cCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 754 LSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 754 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
++.+|.++..+++|+.|+|++|+.+..+|..+..+++|+.+++.+|.
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 44566666777777777777777777777777777777777655553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=6.7e-19 Score=185.17 Aligned_cols=247 Identities=21% Similarity=0.283 Sum_probs=173.7
Q ss_pred EeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeec
Q 003321 572 ILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLC 651 (830)
Q Consensus 572 ~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 651 (830)
+++++.++....|..+...+++-+|+++++....... +.|-+|..|-+|||++|.+..+|+.+..|.+|++|.|++|
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 3556667677788888888888888887765432211 3356788888888888888888888888888888888877
Q ss_pred ccccccccc---------------------ccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc
Q 003321 652 KINNSLDQS---------------------VVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP 710 (830)
Q Consensus 652 ~~~~~~~~~---------------------~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp 710 (830)
.+...--.. ++.....+.||..++++.| ++..+|..+.++++|+.|+||+|. ++++.
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~ 261 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELN 261 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeee
Confidence 643210000 1111123455555666554 456666666666667777776654 55555
Q ss_pred hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEecccccc-ccCcchhhhccCCCCcEEeccCccCCccCCccccccc
Q 003321 711 ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCV-SLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLK 789 (830)
Q Consensus 711 ~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~-~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 789 (830)
..++.+.+|++|+++. +.+..+|..+++|++|+.|.+.+|. ..+.+|++||.|.+|+.+...+|. +.-+|++++.|.
T Consensus 262 ~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~ 339 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCV 339 (1255)
T ss_pred ccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhH
Confidence 5566666666777666 3567889999999999999887643 345789999999999999998887 888999999999
Q ss_pred cCceeecCchhhhhHHHHhhhCCCceeeeccccccC
Q 003321 790 SLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFSL 825 (830)
Q Consensus 790 ~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~l 825 (830)
.|+.|.++.|.-.+.+.-.--+|.|+++....-.+|
T Consensus 340 kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 999998888877777665557777777665554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=1.6e-17 Score=174.98 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=108.6
Q ss_pred EEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCC----------------------CCCCCccccCeeeecc
Q 003321 570 VLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNF----------------------SVCSNLTNLRSLWLEK 627 (830)
Q Consensus 570 ~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~----------------------~~l~~l~~L~~L~L~~ 627 (830)
.|.++++.+....+|+-+..+.+|++|.++++......+..+ ..+..|.||+.+|++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 456788888888899999999999999998875332221111 1233344455555555
Q ss_pred cccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCC-C
Q 003321 628 VSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHS-L 706 (830)
Q Consensus 628 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~-l 706 (830)
|++..+|+.+.++.+|+.|+|++|.+...-... ....+|+.|++++| .++.+|..++.|++|+.|.+.+|.. .
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-----~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-----GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccH-----HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccc
Confidence 555555555555555555555554433211000 11334555555554 3455555555555555555544432 1
Q ss_pred CccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccC
Q 003321 707 QELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 781 (830)
Q Consensus 707 ~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 781 (830)
.-+|+.||+|.+|+.+..++ +.++-+|.+++.++.|+.|.|+. +.+-++|+.|.-|+.|+.|++.+|+.+.-.
T Consensus 306 eGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 23555555555555554443 34555555555555555555543 344455555555555555555555544433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=6.1e-15 Score=154.97 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=118.2
Q ss_pred EEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC-ccccCCCceEEe
Q 003321 571 LILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISF 648 (830)
Q Consensus 571 l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l 648 (830)
+++.++.+....+| ..|+++++|+.|++..+..... ....|.+|+.|+.|.|..|.+..+.++ |..+.++++|+|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv---e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV---EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeee---hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 45566666666677 4566699999998876653221 123466777777777777777777665 455777777777
Q ss_pred eeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccC
Q 003321 649 VLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYAC 727 (830)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~ 727 (830)
..|++...-.+.+ -.++.|+.|+++.|..-..-+++....++|+.|+|+.|. +..++ .++..|..|+.|+|++|
T Consensus 277 ~~N~l~~vn~g~l----fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 277 ETNRLQAVNEGWL----FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ccchhhhhhcccc----cccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc
Confidence 7766554333322 236667777777665444445566666777777777654 33333 44555555555555554
Q ss_pred CCCCccchhhcCCCCCcEeccccccccCcch---hhhccCCCCcEEeccCccCCccCCc-cccccccCceeecCch
Q 003321 728 PHLRTLPARICELVCLKYLNISQCVSLSCLP---QGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEED 799 (830)
Q Consensus 728 ~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp---~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~ 799 (830)
.....-...|..+.+|+.|+|++|..-..+. ..+..|++|+.|.+.||. ++.+|. .+..++.|++|++.+|
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence 3211111223444445555554433211111 113334444444444444 344432 3444444444444443
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-15 Score=134.06 Aligned_cols=164 Identities=25% Similarity=0.392 Sum_probs=112.2
Q ss_pred ccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCC
Q 003321 617 LTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLK 696 (830)
Q Consensus 617 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 696 (830)
+.++..|.|++|.+..+|+.+..+.+|+.|++..|++.. ++.++ ..++.|+.|++.-| .+..+|.++|.++.|+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~i----ssl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSI----SSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhh----hhchhhhheecchh-hhhcCccccCCCchhh
Confidence 334444444444444444444444444444444333221 11111 22444444444433 3566889999999999
Q ss_pred EEEeeCcCCCC-ccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCc
Q 003321 697 NLSVTNCHSLQ-ELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMREC 775 (830)
Q Consensus 697 ~L~L~~c~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 775 (830)
.|||.+|...+ .+|-.+..+..|+.|.+++| ..+.+|..++++++|+.|.+.. +.+-++|..++.|+.|+.|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc
Confidence 99998866433 47888888888999999884 5788899999999999999988 456688999999999999999999
Q ss_pred cCCccCCccccccc
Q 003321 776 SQIWSLPKSVNSLK 789 (830)
Q Consensus 776 ~~l~~lp~~~~~l~ 789 (830)
. +.-+|..++++.
T Consensus 184 r-l~vlppel~~l~ 196 (264)
T KOG0617|consen 184 R-LTVLPPELANLD 196 (264)
T ss_pred e-eeecChhhhhhh
Confidence 8 788887777653
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=5.9e-14 Score=147.71 Aligned_cols=249 Identities=21% Similarity=0.235 Sum_probs=168.7
Q ss_pred CCccceEEEeeeCCccccccc-ccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccc
Q 003321 541 QPFNAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTN 619 (830)
Q Consensus 541 ~~~~~~~lsi~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 619 (830)
.|..++.+.+..+.+.+.++. ...+|+++.+.++.+ ....+|.......+|..|++.++....... ..++.++.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFGHESGHLEKLDLRHNLISSVTS---EELSALPA 150 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhcccccccccceeEEeeeccccccccH---HHHHhHhh
Confidence 455677888888877776643 357888888776554 466788877777889999998775433222 34677899
Q ss_pred cCeeeecccccCccCCCccc-cCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCE
Q 003321 620 LRSLWLEKVSISQLPKSSIP-LKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKN 697 (830)
Q Consensus 620 L~~L~L~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~ 697 (830)
||.|||+.|.|+.+|...++ -.++++|+|+.|.+...-.+.+ ..+.+|..|.|++|. ++.+|. ++.+|++|+.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F----~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF----DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc----cccchheeeecccCc-ccccCHHHhhhcchhhh
Confidence 99999999999999876555 4789999999988876554444 346788888998874 566664 4556888888
Q ss_pred EEeeCcCCCCcc-chhcCCCCCCC------------------------EEEcccCCCCCccchhhcCCCCCcEecccccc
Q 003321 698 LSVTNCHSLQEL-PADIGKMKSLQ------------------------ILRLYACPHLRTLPARICELVCLKYLNISQCV 752 (830)
Q Consensus 698 L~L~~c~~l~~l-p~~i~~l~~L~------------------------~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~ 752 (830)
|+|..|. +..+ --.|..|++|+ +|+|+.|....--..++.+|++|+.|++|+|.
T Consensus 226 LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 226 LDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 8887765 2222 22344444444 44444433222222345667777777777754
Q ss_pred ccCcchhhhccCCCCcEEeccCccCCccCC-ccccccccCceeecCchhh
Q 003321 753 SLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDVS 801 (830)
Q Consensus 753 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~~~ 801 (830)
.-+--+++....++|+.|+|++|. +..+| ..+..|..|+.|+++.|..
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccch
Confidence 433344556677788888888887 45554 4566778888888777643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=7e-16 Score=155.11 Aligned_cols=178 Identities=26% Similarity=0.352 Sum_probs=123.3
Q ss_pred CCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 693 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~ 693 (830)
++.+..|..|+..+|++..+|.++..+.+|..|++.++.+....+..+ +++.|++|+..+| .++.+|+.++.|.
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~~N-~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCNSN-LLETLPPELGGLE 206 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-----HHHHHHhcccchh-hhhcCChhhcchh
Confidence 344445555555555555555555555555555555544332222211 2566777776665 4677888888888
Q ss_pred CCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhc-CCCCCcEeccccccccCcchhhhccCCCCcEEec
Q 003321 694 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARIC-ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 772 (830)
Q Consensus 694 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 772 (830)
+|..|++..|. +..+| +|+++..|..|++.. +.++.+|..++ ++++|..||+.. ++++++|.++.-|.+|+.|++
T Consensus 207 ~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNK-IRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcc-cccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcc
Confidence 88888887754 66677 777888888887765 45677777665 788888888887 578888888888888888888
Q ss_pred cCccCCccCCccccccccCceeecCchhhhh
Q 003321 773 RECSQIWSLPKSVNSLKSLRQVICEEDVSWA 803 (830)
Q Consensus 773 ~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~ 803 (830)
++|. +..+|..++++ .|+.|.+.+|.-.+
T Consensus 283 SNN~-is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 283 SNND-ISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cCCc-cccCCcccccc-eeeehhhcCCchHH
Confidence 8887 78888888888 88888887775444
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.2e-15 Score=134.10 Aligned_cols=181 Identities=26% Similarity=0.331 Sum_probs=138.2
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
+.++++...|.++.+... ...+.+..+.+|+.|++.+|+++++|.++..+++|+.|++..|++.. .+..+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~-----lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI-----LPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-----CccccC
Confidence 345566666666554322 22245677888889999999999999999999999999988776543 223335
Q ss_pred CCCccceeccccccc-cCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 667 TLPCLTELTFDHCDD-LMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~-l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
.+|.|+.|++.+|.- -..+|..+..|+.|+-|.|++|. .+.+|.++++|++|+.|.+.+|. +-++|..++.++.|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHH
Confidence 688899999987642 34689899999999999999965 78899999999999999999955 5679999999999999
Q ss_pred eccccccccCcchhhhccCC---CCcEEeccCccCCc
Q 003321 746 LNISQCVSLSCLPQGIGNLI---RLEKIDMRECSQIW 779 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l~~l~---~L~~L~l~~~~~l~ 779 (830)
|++.+ +.+..+|+.++++. +=+.+.+.+|+...
T Consensus 178 lhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 178 LHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred Hhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 99998 57889998887653 22344455555433
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=3.6e-15 Score=150.05 Aligned_cols=152 Identities=28% Similarity=0.406 Sum_probs=71.4
Q ss_pred CCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 693 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~ 693 (830)
+.++..|..|++.+|+++.+|+..-.++.|++|+...|.... ++.-...+..|..|++.+| .+..+| .|+++.
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t-----lP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs 228 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET-----LPPELGGLESLELLYLRRN-KIRFLP-EFPGCS 228 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc-----CChhhcchhhhHHHHhhhc-ccccCC-CCCccH
Confidence 334444555555555555555444445555555544333221 1111123444444555544 344444 355555
Q ss_pred CCCEEEeeCcCCCCccchhcC-CCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEec
Q 003321 694 SLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 772 (830)
Q Consensus 694 ~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 772 (830)
.|..|.++.| .++.+|..++ +|++|.+|++.+ +.+++.|+.++.+.+|.+||+|+ +.++.+|..++++ .|+.|-+
T Consensus 229 ~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 229 LLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhh
Confidence 5555555443 2444444443 455555555554 33455555555555555555554 3444555555555 5555555
Q ss_pred cCcc
Q 003321 773 RECS 776 (830)
Q Consensus 773 ~~~~ 776 (830)
.||+
T Consensus 305 eGNP 308 (565)
T KOG0472|consen 305 EGNP 308 (565)
T ss_pred cCCc
Confidence 5555
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=3.8e-11 Score=147.82 Aligned_cols=284 Identities=15% Similarity=0.172 Sum_probs=179.0
Q ss_pred hhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHHhhcCCCCCC-
Q 003321 191 GKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSME- 268 (830)
Q Consensus 191 ~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~- 268 (830)
.+.++.+.|......+++.|.|++|.||||++..... .++ .+.|+++... .++..+...++..+.......
T Consensus 18 ~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~------~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~ 90 (903)
T PRK04841 18 VRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA------GKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHC 90 (903)
T ss_pred cchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH------hCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCccc
Confidence 3467777776556789999999999999999999873 233 4669999744 456667677776664211110
Q ss_pred --C-----CCC-c---ccchHHHHhh--cCCcEEEEEeCCCCh------HhHHHhhhcCC-CceEEEEecccccc-----
Q 003321 269 --P-----NYV-I---PHWNLQIQSK--LGSRCLVVLDDVWSL------AVLEQLIFRVP-GCKTLVVSRFKFST----- 323 (830)
Q Consensus 269 --~-----~~~-~---~~~~~~~~~l--~~kr~LlVlDdv~~~------~~~~~l~~~~~-gs~iivTtr~~~~~----- 323 (830)
. ... . ..+...+..+ .+.+++|||||+... +.+..+....| +.++|||||.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l 170 (903)
T PRK04841 91 SKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANL 170 (903)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhH
Confidence 0 000 0 1112223333 268999999999853 24555555555 56888999985422
Q ss_pred -cccceEEcc----CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHh
Q 003321 324 -VLNDTYEVE----LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRL 398 (830)
Q Consensus 324 -~~~~~~~l~----~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l 398 (830)
......++. +|+.+|+.++|...... ...++.+.+|.+.|+|.|+++..++..++..... .......+
T Consensus 171 ~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~ 243 (903)
T PRK04841 171 RVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS------PIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL 243 (903)
T ss_pred HhcCcceecCHHhCCCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh
Confidence 123345666 89999999999765321 1124567899999999999999999877544211 01111111
Q ss_pred ccCCCCcccchhhHHHHHHH-hHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhHH
Q 003321 399 SKGEPICESHENNLLDRMAI-SIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLK 477 (830)
Q Consensus 399 ~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~~ 477 (830)
.. .....+...+.- .++.||++.+..++..|+++ .|+.+ +... ....+.+...+.+|.+.+++.
T Consensus 244 ~~------~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 244 AG------INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTGEENGQMRLEELERQGLFI 308 (903)
T ss_pred cC------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcCCCcHHHHHHHHHHCCCee
Confidence 10 002335555543 48899999999999999997 34433 2221 122334577899999998864
Q ss_pred HHhhhhccCCcccccccccchhhHHHHHHHHHhhcc
Q 003321 478 IVKDARRAGDMYSSYYEISVTQHDVLRDLALHLSNQ 513 (830)
Q Consensus 478 ~~~~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~ 513 (830)
...+.. + ..|+.|++++++.......
T Consensus 309 ~~~~~~--~--------~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 309 QRMDDS--G--------EWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred EeecCC--C--------CEEehhHHHHHHHHHHHHh
Confidence 211110 0 1367899999999876543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=2.1e-11 Score=141.10 Aligned_cols=223 Identities=19% Similarity=0.252 Sum_probs=142.0
Q ss_pred cceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCee
Q 003321 544 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 623 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 623 (830)
..+.+.+..+.+..+.. ..+++++.|.+.. +....+|..+. .+|+.|++.++...... ..+ ..+|++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~--N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP----~~l--~s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELKSLPE--NLQGNIKTLYANS--NQLTSIPATLP--DTIQEMELSINRITELP----ERL--PSALQSL 267 (754)
T ss_pred CCcEEEecCCCCCcCCh--hhccCCCEEECCC--CccccCChhhh--ccccEEECcCCccCcCC----hhH--hCCCCEE
Confidence 34556665555554332 1124555555543 33445665443 36777777666533211 111 2467888
Q ss_pred eecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCc
Q 003321 624 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 703 (830)
Q Consensus 624 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c 703 (830)
++++|.+..+|..+. .+|++|++++|.+.. ++..+ .++|+.|++++| .+..+|..+. ++|++|++++|
T Consensus 268 ~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------p~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N 335 (754)
T PRK15370 268 DLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHL------PSGITHLNVQSN-SLTALPETLP--PGLKTLEAGEN 335 (754)
T ss_pred ECcCCccCccccccC--CCCcEEECCCCcccc-Ccccc------hhhHHHHHhcCC-ccccCCcccc--ccceeccccCC
Confidence 888888887777654 478888888776543 22111 246778888876 3556665443 68888888887
Q ss_pred CCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc
Q 003321 704 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 704 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
. +..+|..+. ++|+.|++++|. +..+|..+ .++|++|+|++| .+..+|..+. .+|+.|++++|. +..+|.
T Consensus 336 ~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 336 A-LTSLPASLP--PELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred c-cccCChhhc--CcccEEECCCCC-CCcCChhh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 5 566776664 688999998864 56677655 368899999885 5667887664 368888898887 667776
Q ss_pred cccc----cccCceeecCchh
Q 003321 784 SVNS----LKSLRQVICEEDV 800 (830)
Q Consensus 784 ~~~~----l~~L~~l~~~~~~ 800 (830)
.+.+ ++.+..+++.+|.
T Consensus 406 sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCC
Confidence 5544 3667778777664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=9.2e-11 Score=134.89 Aligned_cols=207 Identities=24% Similarity=0.214 Sum_probs=107.1
Q ss_pred ceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCC----------C----CccccCeeeecccccCc
Q 003321 567 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVC----------S----NLTNLRSLWLEKVSISQ 632 (830)
Q Consensus 567 ~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l----------~----~l~~L~~L~L~~~~i~~ 632 (830)
+++.|.+. .+....+|. .+++|++|++.+|...... ..+..+ . .+.+|+.|++++|.++.
T Consensus 223 ~L~~L~L~--~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 223 HITTLVIP--DNNLTSLPA---LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 296 (788)
T ss_pred CCCEEEcc--CCcCCCCCC---CCCCCcEEEecCCccCccc-CcccccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence 45555444 344555664 2578899998877543221 000000 0 11234455555555555
Q ss_pred cCCCccccCCCceEEeeecccccccccc-------------ccCcCCCCCccceeccccccccCccccccCCCCCCCEEE
Q 003321 633 LPKSSIPLKKMQKISFVLCKINNSLDQS-------------VVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLS 699 (830)
Q Consensus 633 lp~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 699 (830)
+|.. +++|+.|+++.|.+... +.. +..++....+|+.|+|++| .+..+|.. ..+|+.|+
T Consensus 297 LP~~---p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~ 368 (788)
T PRK15387 297 LPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLPTL---PSELYKLW 368 (788)
T ss_pred cccc---ccccceeECCCCccccC-CCCcccccccccccCccccccccccccceEecCCC-ccCCCCCC---Ccccceeh
Confidence 5532 25667777766654431 110 0000001113334444333 22333321 12333333
Q ss_pred eeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCc
Q 003321 700 VTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW 779 (830)
Q Consensus 700 L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~ 779 (830)
+++|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++| .+..+|.. +.+|+.|++++|. +.
T Consensus 369 Ls~N~-L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt 435 (788)
T PRK15387 369 AYNNR-LTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LT 435 (788)
T ss_pred hhccc-cccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-cc
Confidence 33332 2233321 2356777776653 4456543 356777888775 45667653 3467788888887 67
Q ss_pred cCCccccccccCceeecCchh
Q 003321 780 SLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 780 ~lp~~~~~l~~L~~l~~~~~~ 800 (830)
.+|..+.++++|..+++++|.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccChHHhhccCCCeEECCCCC
Confidence 888888889999999888774
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-12 Score=145.95 Aligned_cols=216 Identities=21% Similarity=0.243 Sum_probs=140.5
Q ss_pred ccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccc
Q 003321 576 SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINN 655 (830)
Q Consensus 576 ~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 655 (830)
+.+....+|.+++.+.+|..+....+..... +..+..+.+|++|....|.++.+|+...++++|++|+|..|++..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~l----p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLVAL----PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHHhh----HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 3333556777788888888887766554221 122445556666666666666666666666666666666555432
Q ss_pred ccccccc--------------------C-cCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhc
Q 003321 656 SLDQSVV--------------------D-LPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADI 713 (830)
Q Consensus 656 ~~~~~~~--------------------~-~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i 713 (830)
..+..+. . -...++.|+.|++.+|.-....-+.+.++.+|+.|+|++|+ +..+| ..+
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~ 403 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKL 403 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHH
Confidence 2110000 0 00224456667777765333333447788888888888865 66676 456
Q ss_pred CCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCc--cCCccccccccC
Q 003321 714 GKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW--SLPKSVNSLKSL 791 (830)
Q Consensus 714 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L 791 (830)
.+|..|+.|+|+| +++..+|..+..++.|++|...+ +.+..+| .+..++.|+.+|++.|. ++ .+|..... ++|
T Consensus 404 ~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~L 478 (1081)
T KOG0618|consen 404 RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNL 478 (1081)
T ss_pred hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccch-hhhhhhhhhCCC-ccc
Confidence 7888888888888 56888888888888888887766 5677888 68888888888888776 43 24433333 788
Q ss_pred ceeecCchhh
Q 003321 792 RQVICEEDVS 801 (830)
Q Consensus 792 ~~l~~~~~~~ 801 (830)
++|++++|..
T Consensus 479 kyLdlSGN~~ 488 (1081)
T KOG0618|consen 479 KYLDLSGNTR 488 (1081)
T ss_pred ceeeccCCcc
Confidence 8888888853
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=6e-11 Score=137.30 Aligned_cols=201 Identities=19% Similarity=0.300 Sum_probs=143.4
Q ss_pred ceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceE
Q 003321 567 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKI 646 (830)
Q Consensus 567 ~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 646 (830)
.++.|.+ +.+....+|..+. .+|++|++.++...... .. -..+|+.|+|++|.+..+|..+. .+|+.|
T Consensus 200 ~L~~L~L--s~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP----~~--l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLIL--DNNELKSLPENLQ--GNIKTLYANSNQLTSIP----AT--LPDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEe--cCCCCCcCChhhc--cCCCEEECCCCccccCC----hh--hhccccEEECcCCccCcCChhHh--CCCCEE
Confidence 4555554 4444556776554 58999998876543211 11 12478999999999998887764 579999
Q ss_pred EeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEccc
Q 003321 647 SFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYA 726 (830)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~ 726 (830)
++++|.+.. ++..+ +++|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++
T Consensus 268 ~Ls~N~L~~-LP~~l------~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~ 334 (754)
T PRK15370 268 DLFHNKISC-LPENL------PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAGE 334 (754)
T ss_pred ECcCCccCc-ccccc------CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccccC
Confidence 998877653 33322 357999999988 5677776543 578999999875 566776553 6899999998
Q ss_pred CCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhh
Q 003321 727 CPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 801 (830)
Q Consensus 727 ~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~ 801 (830)
|. +..+|..+. ++|+.|++++| .+..+|..+. ++|+.|+|++|. +..+|..+. .+|+.|++++|..
T Consensus 335 N~-Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 335 NA-LTSLPASLP--PELQVLDVSKN-QITVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred Cc-cccCChhhc--CcccEEECCCC-CCCcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCc
Confidence 75 666887663 79999999986 5677887663 689999999998 778887654 3577777776643
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=4.8e-09 Score=115.83 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=165.2
Q ss_pred CcccccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 181 GNLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.+..++||+.+.+++...+.. ......+.|+|++|+|||++++.++++...... ...+++++.....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~-~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV-KVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEECCcCCCHHHHHHHH
Confidence 345689999999999999843 234566789999999999999999965322220 1234466666667788889999
Q ss_pred HHhhcCCCCCCCCCCc-ccchHHHHhh--cCCcEEEEEeCCCChH------hHHHhhh---cCCCce--EEEEecccccc
Q 003321 258 WGFVSGCDSMEPNYVI-PHWNLQIQSK--LGSRCLVVLDDVWSLA------VLEQLIF---RVPGCK--TLVVSRFKFST 323 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~-~~~~~~~~~l--~~kr~LlVlDdv~~~~------~~~~l~~---~~~gs~--iivTtr~~~~~ 323 (830)
+.++.+.......... +......+.+ .++..+||||+++... .+..+.. ..++++ +|.++......
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988653221111111 1122222333 3567899999998642 3444432 234444 55555543321
Q ss_pred ----------cccceEEccCCCHHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhc-----C
Q 003321 324 ----------VLNDTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR-----E 385 (830)
Q Consensus 324 ----------~~~~~~~l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~-----~ 385 (830)
.....+.+++++.++..+++..++ |......+...+.+++......|..+.|+.++-.... +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 112467899999999999998765 2222222222232333333334557778777654321 1
Q ss_pred C---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCC-CC-CCccCHHHHHHH--HHH-hcC
Q 003321 386 Q---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSF-PE-DKKIPLEVLINM--WVE-IHD 457 (830)
Q Consensus 386 ~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f-p~-~~~i~~~~Li~~--Wia-~~~ 457 (830)
. +......+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .++ .-+
T Consensus 267 ~~~I~~~~v~~a~~~~-------------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS-------------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCCcCHHHHHHHHHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 234444444432 12233456889999988776655422 21 133455555432 122 112
Q ss_pred C---CHHHHHHHHHHHhhhhhHHHHh
Q 003321 458 L---DEEEAFAILVELSDRNLLKIVK 480 (830)
Q Consensus 458 ~---~~~~~~~~l~~L~~r~l~~~~~ 480 (830)
. .......+++.|.+.++++...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2 2356677888888888887543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=1.3e-11 Score=132.29 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=153.4
Q ss_pred CCceEEEEeeCccCc---ccccChhhhhcccCceEEEccccCCc--cccCC-CCCCCCccccCeeeecccccC-ccCCCc
Q 003321 565 FPKAEVLILNFSSTE---EYFLPPFIENMEKLRALIVINYSTSN--AALGN-FSVCSNLTNLRSLWLEKVSIS-QLPKSS 637 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~---~~~lp~~i~~l~~Lr~L~l~~~~~~~--~~~~~-~~~l~~l~~L~~L~L~~~~i~-~lp~~~ 637 (830)
++.++.+.+..+... ...++..+...+.|++|.+.++.... ..... ...+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666555431 12355667777889999887664431 11010 123556889999999999886 344444
Q ss_pred cccCC---CceEEeeeccccccccccccCcCCCC-CccceeccccccccC----ccccccCCCCCCCEEEeeCcCCCC--
Q 003321 638 IPLKK---MQKISFVLCKINNSLDQSVVDLPKTL-PCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQ-- 707 (830)
Q Consensus 638 ~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~L~~c~~l~-- 707 (830)
..+.+ |++|++++|.+.......+......+ ++|+.|++++|.... .++..+..+++|++|++++|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44444 99999998876532111111222334 789999999986432 344556777899999999986442
Q ss_pred --ccchhcCCCCCCCEEEcccCCCCC----ccchhhcCCCCCcEeccccccccCcchhhh-c----cCCCCcEEeccCcc
Q 003321 708 --ELPADIGKMKSLQILRLYACPHLR----TLPARICELVCLKYLNISQCVSLSCLPQGI-G----NLIRLEKIDMRECS 776 (830)
Q Consensus 708 --~lp~~i~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l-~----~l~~L~~L~l~~~~ 776 (830)
.++..+..+++|+.|++++|.... .++..+..+++|++|++++|.....-+..+ . ..+.|+.|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 344556677899999999886432 344556778899999999975432111111 1 24789999999997
Q ss_pred CC----ccCCccccccccCceeecCchhhhh
Q 003321 777 QI----WSLPKSVNSLKSLRQVICEEDVSWA 803 (830)
Q Consensus 777 ~l----~~lp~~~~~l~~L~~l~~~~~~~~~ 803 (830)
.. ..++..+..+++|+.+++++|....
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 43 2345566667889999988774443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=8.4e-12 Score=133.88 Aligned_cols=235 Identities=17% Similarity=0.131 Sum_probs=131.0
Q ss_pred CCCceEEEEeeCccCc-----ccccChhhhhcccCceEEEccccCCccccCCCCC-CCCccccCeeeecccccCc-----
Q 003321 564 EFPKAEVLILNFSSTE-----EYFLPPFIENMEKLRALIVINYSTSNAALGNFSV-CSNLTNLRSLWLEKVSISQ----- 632 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~-----~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~i~~----- 632 (830)
..+.++.+.+...... ...++..+.++++|+.|++.++.........+.. ..+ ++|++|++++|.+..
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHH
Confidence 3445565555443221 1223455667778888888766543211111111 112 458888888877652
Q ss_pred cCCCcccc-CCCceEEeeeccccccccccccCcCCCCCccceeccccccccC----ccccccCCCCCCCEEEeeCcCCC-
Q 003321 633 LPKSSIPL-KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSL- 706 (830)
Q Consensus 633 lp~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~L~~c~~l- 706 (830)
+...+..+ ++|+.|++++|.+.......+......+++|++|++++|.... .++..+..+++|++|++++|...
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 33344455 7788888888776532222222223345678888888774321 23444556678888888887532
Q ss_pred ---CccchhcCCCCCCCEEEcccCCCCCccchhhc-----CCCCCcEecccccccc----CcchhhhccCCCCcEEeccC
Q 003321 707 ---QELPADIGKMKSLQILRLYACPHLRTLPARIC-----ELVCLKYLNISQCVSL----SCLPQGIGNLIRLEKIDMRE 774 (830)
Q Consensus 707 ---~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~-----~l~~L~~L~L~~c~~l----~~lp~~l~~l~~L~~L~l~~ 774 (830)
..++..+..+++|++|++++|.....-+..+. ..+.|++|++++|... ..+...+..+++|+.+++++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 22445566777888888888754331111111 2367888888876432 23444566667888888888
Q ss_pred ccCCcc----CCcccccc-ccCceeecCch
Q 003321 775 CSQIWS----LPKSVNSL-KSLRQVICEED 799 (830)
Q Consensus 775 ~~~l~~----lp~~~~~l-~~L~~l~~~~~ 799 (830)
|..... +...+... +.|+.+++..+
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 774322 22222222 45666665544
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=7.3e-12 Score=139.41 Aligned_cols=243 Identities=22% Similarity=0.291 Sum_probs=165.7
Q ss_pred ccceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 543 FNAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 543 ~~~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
.+...+.+.......+.-.-..+++++.+..+.+. ...+|..+..+.+|++|.+..+... .....+..++.|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel~----yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNR--LVALPLRISRITSLVSLSAAYNELE----YIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhhh----hCCCcccccceeee
Confidence 34455555555544444333456777776665544 4778888899999999887655432 22344567889999
Q ss_pred eeecccccCccCCCccccC--CCceEEeeecccc--------------------ccccccccCcCCCCCccceecccccc
Q 003321 623 LWLEKVSISQLPKSSIPLK--KMQKISFVLCKIN--------------------NSLDQSVVDLPKTLPCLTELTFDHCD 680 (830)
Q Consensus 623 L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~--------------------~~~~~~~~~~~~~~~~L~~L~l~~~~ 680 (830)
|+|..|.+..+|+.+.... .|+.|+.+.+++. +.+.........++++|+.|+|++|
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN- 393 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN- 393 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-
Confidence 9999999988887543311 2344443333211 2233334444567899999999998
Q ss_pred ccCcccc-ccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccC--cc
Q 003321 681 DLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLS--CL 757 (830)
Q Consensus 681 ~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~--~l 757 (830)
.+..+|. .+.+++.|+.|+||||. ++.+|..+.+++.|++|...+ +.+..+| .+..++.|+.+|++.| .++ .+
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l 469 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTL 469 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccc-hhhhhhh
Confidence 4777885 46799999999999975 899999999999999998877 4577888 7899999999999864 444 23
Q ss_pred hhhhccCCCCcEEeccCccCCccCCccccccccCceeecC
Q 003321 758 PQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICE 797 (830)
Q Consensus 758 p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~ 797 (830)
|.... -++|++|+++||..+.---..+..++++...+..
T Consensus 470 ~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 470 PEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred hhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 33222 2899999999998544333344455555544433
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=6.3e-10 Score=128.08 Aligned_cols=124 Identities=22% Similarity=0.217 Sum_probs=93.9
Q ss_pred CCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCC
Q 003321 641 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQ 720 (830)
Q Consensus 641 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 720 (830)
.+|++|++++|.+.. + +...++|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.. .++|+
T Consensus 342 ~~Lq~LdLS~N~Ls~-L-------P~lp~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~ 405 (788)
T PRK15387 342 SGLQELSVSDNQLAS-L-------PTLPSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELK 405 (788)
T ss_pred cccceEecCCCccCC-C-------CCCCcccceehhhcc-ccccCccc---ccccceEEecCCc-ccCCCCc---ccCCC
Confidence 367888888776553 1 122467889999887 46678864 3579999999975 6677753 36899
Q ss_pred EEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccc
Q 003321 721 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSV 785 (830)
Q Consensus 721 ~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 785 (830)
.|++++|. +..+|.. +.+|+.|++++ +.++.+|..+.++++|+.|++++|+.....|..+
T Consensus 406 ~LdLS~N~-LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 406 ELMVSGNR-LTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEEccCCc-CCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99999975 6678864 35788999998 4678999999999999999999999665555544
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.03 E-value=4.3e-08 Score=107.08 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=162.8
Q ss_pred cccccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhcccccc-cc--cCCceEEEEecCCCCHHHHHH
Q 003321 182 NLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVT-SY--FNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-~~--F~~~~~wv~v~~~~~~~~l~~ 255 (830)
+..++||+.+.++|..+|.. ......+.|+|++|+|||++++.++++..-. .. ....++|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34679999999999999854 2445678999999999999999999642110 11 112345777777677788999
Q ss_pred HHHHhhcC--CCCCCCCCC-cccchHHHHhh--cCCcEEEEEeCCCCh-----HhHHHhhh-----cCCCc--eEEEEec
Q 003321 256 KVWGFVSG--CDSMEPNYV-IPHWNLQIQSK--LGSRCLVVLDDVWSL-----AVLEQLIF-----RVPGC--KTLVVSR 318 (830)
Q Consensus 256 ~i~~~l~~--~~~~~~~~~-~~~~~~~~~~l--~~kr~LlVlDdv~~~-----~~~~~l~~-----~~~gs--~iivTtr 318 (830)
.++.++.. ......... .+......+.+ .+++++||||+++.. +.+..+.. ..+++ .+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988852 111111111 11122233333 466889999999865 12333322 12223 3444443
Q ss_pred cccc-c---------cccceEEccCCCHHHHHHHHHHHhc---CCCCCCCchhHHHHHHHHHHcCCchHHH-HHHHHHh-
Q 003321 319 FKFS-T---------VLNDTYEVELLREDESLSLFCYSAF---GQKTIPPSANENLVKQIVKKCKGLPLAL-KVIGASL- 383 (830)
Q Consensus 319 ~~~~-~---------~~~~~~~l~~L~~~e~~~Lf~~~af---~~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~~~~L- 383 (830)
.... . .....+.+++.+.++..+++..++- ...... +...+.+.+++....|.|-.+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3221 1 1124688999999999999988763 111111 111234555677777887443 3332221
Q ss_pred -c---CC---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCC--CCCCccCHHHHHHHH--
Q 003321 384 -R---EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSF--PEDKKIPLEVLINMW-- 452 (830)
Q Consensus 384 -~---~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f--p~~~~i~~~~Li~~W-- 452 (830)
. +. +.+..+.+.+.+ -.....-++..||.+.+..+..++.. ..+..+....+...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~-------------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI-------------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 122333333322 12233456788999888766655421 133446666666533
Q ss_pred -HHhcC---CCHHHHHHHHHHHhhhhhHHHHh
Q 003321 453 -VEIHD---LDEEEAFAILVELSDRNLLKIVK 480 (830)
Q Consensus 453 -ia~~~---~~~~~~~~~l~~L~~r~l~~~~~ 480 (830)
....+ ........++..|...|+++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22222 33457778888888888887643
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.99 E-value=1.1e-08 Score=108.68 Aligned_cols=269 Identities=15% Similarity=0.070 Sum_probs=145.8
Q ss_pred cccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.+||++..++++..++.. ......+.++|++|+|||+||+.+++.. ...+ ..+..+.......+.. .+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~----~~~~~~~~~~~~~l~~-~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL----KITSGPALEKPGDLAA-ILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE----EEeccchhcCchhHHH-HHH
Confidence 469999999998888853 2345678899999999999999999642 2222 1222211112222221 112
Q ss_pred hhcCCCC--CCCCCC--cccchHHHHhhcCCcEEEEEeCCCChHhHHHhhhcCCCceEEEEecccccc-----cccceEE
Q 003321 260 FVSGCDS--MEPNYV--IPHWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST-----VLNDTYE 330 (830)
Q Consensus 260 ~l~~~~~--~~~~~~--~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~~~-----~~~~~~~ 330 (830)
.+..... .+.-+. ..........+.+.+..+|+|+..+...+.... .|.+-|..||+...+. .....++
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL--PPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC--CCeEEEEecCCccccCHHHHhhcceEEE
Confidence 2111000 000000 000001111123333444444444333332211 1244555666654332 2345689
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhccCCCCcccchh
Q 003321 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICESHEN 410 (830)
Q Consensus 331 l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~~~~ 410 (830)
+++++.++..+++.+.+-.... ...++....|++.|+|.|-.+..++..+ |..+.. .....+....-.
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~--~~~~~it~~~v~ 223 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV--RGQKIINRDIAL 223 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH--cCCCCcCHHHHH
Confidence 9999999999999887743221 2335678899999999997665555432 211110 000111111112
Q ss_pred hHHHHHHHhHhcCChhHHHHHh-hhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHH-HHhhhhhHHH
Q 003321 411 NLLDRMAISIQYLPKKVKECFL-DLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILV-ELSDRNLLKI 478 (830)
Q Consensus 411 ~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~-~L~~r~l~~~ 478 (830)
.....+...|..|+++.+..+. .++.++.+ .+..+.+... -+.+...+...++ .|++++|++.
T Consensus 224 ~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~----lg~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 224 KALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAA----LGEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHH----hCCCcchHHHhhhHHHHHcCCccc
Confidence 2333356678889988887666 55666543 4555444433 3667778888888 6999999964
No 27
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=2.4e-09 Score=102.65 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=84.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccC---CceEEEEecCCCCHH---HHHHHHHHhhcCCCCCCCCCCcccchHH
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFN---NRILFLTVSQSPNVE---QLRAKVWGFVSGCDSMEPNYVIPHWNLQ 279 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~---~~~~wv~v~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 279 (830)
|++.|.|.+|+||||+++.++.+..-..... ..++|.+.+...... .+...+........ ......+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence 5899999999999999999986433333222 234566666543322 33333433332111 0011111111
Q ss_pred HHhhcCCcEEEEEeCCCChHh-------------HHHhhhc--CCCceEEEEecccccc------cccceEEccCCCHHH
Q 003321 280 IQSKLGSRCLVVLDDVWSLAV-------------LEQLIFR--VPGCKTLVVSRFKFST------VLNDTYEVELLREDE 338 (830)
Q Consensus 280 ~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~--~~gs~iivTtr~~~~~------~~~~~~~l~~L~~~e 338 (830)
....++++||||++++... +..+... .++++++||||..... .....+++++|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1267899999999985421 3334444 6799999999988762 233579999999999
Q ss_pred HHHHHHHH
Q 003321 339 SLSLFCYS 346 (830)
Q Consensus 339 ~~~Lf~~~ 346 (830)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999765
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=1.4e-08 Score=108.37 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=146.2
Q ss_pred ccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..++|++..++.+..++.. ......+.++|++|+||||||+.+++... .. +.++..+......+ +..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~----~~~~~~~~~~~~~~-l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG--VN----IRITSGPALEKPGD-LAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC--CC----eEEEecccccChHH-HHHHH
Confidence 4679999999998888753 24466888999999999999999996432 21 21222211111111 12222
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH--hHHHhh----------------------hcCC-CceE
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLI----------------------FRVP-GCKT 313 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~----------------------~~~~-gs~i 313 (830)
..+ ++.-+|++|+++... ..+.+. ...| .+-|
T Consensus 98 ~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 98 TNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred Hhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 221 123355566654321 111110 0112 3445
Q ss_pred EEEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCCh
Q 003321 314 LVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPE 388 (830)
Q Consensus 314 ivTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~ 388 (830)
..||+..... .....+++++++.++..+++.+.+-.... ...++.+..|++.|+|.|-.+..+...+.
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~---- 227 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR---- 227 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH----
Confidence 5566654433 23456899999999999999987643321 22356889999999999965554444321
Q ss_pred HHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHh-hhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHH
Q 003321 389 MYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFL-DLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAIL 467 (830)
Q Consensus 389 ~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l 467 (830)
.|.... ....+....-......+...+..|++..+..+. ....|+.+ .+..+.+.... +.+...++..+
T Consensus 228 -~~a~~~----~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l----g~~~~~~~~~~ 297 (328)
T PRK00080 228 -DFAQVK----GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL----GEERDTIEDVY 297 (328)
T ss_pred -HHHHHc----CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH----CCCcchHHHHh
Confidence 111110 011111111223445566778889888888775 66677765 56666654332 55666777777
Q ss_pred H-HHhhhhhHHHH
Q 003321 468 V-ELSDRNLLKIV 479 (830)
Q Consensus 468 ~-~L~~r~l~~~~ 479 (830)
+ .|++.+|++..
T Consensus 298 e~~Li~~~li~~~ 310 (328)
T PRK00080 298 EPYLIQQGFIQRT 310 (328)
T ss_pred hHHHHHcCCcccC
Confidence 7 89999999743
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=5.6e-11 Score=125.57 Aligned_cols=174 Identities=26% Similarity=0.357 Sum_probs=110.6
Q ss_pred eeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeecc
Q 003321 573 LNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCK 652 (830)
Q Consensus 573 l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~ 652 (830)
.+++.+....+|..+..+..|..++++.|.... ....+.++..|.+|+|+.|.++.+|..++.|+ |+.|-+
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~----ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~---- 150 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRT----IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV---- 150 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhcccee----cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE----
Confidence 344445456677777777777777776665432 12345677777888888888777777666543 444444
Q ss_pred ccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCc
Q 003321 653 INNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRT 732 (830)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 732 (830)
++| .++.+|..++.+.+|..|+.+.|. +..+|..++.|.+|+.|++..| .+..
T Consensus 151 ------------------------sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~ 203 (722)
T KOG0532|consen 151 ------------------------SNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLED 203 (722)
T ss_pred ------------------------ecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhh
Confidence 333 456666667766677777776654 5666666777777777776663 4555
Q ss_pred cchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccc
Q 003321 733 LPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSV 785 (830)
Q Consensus 733 lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~ 785 (830)
+|..++.|+ |..||+|. +++..+|-.|.+|+.|++|-|.+|+ +.+.|..|
T Consensus 204 lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqI 253 (722)
T KOG0532|consen 204 LPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQI 253 (722)
T ss_pred CCHHHhCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHH
Confidence 666666444 66677663 5666777777777777777777776 56665543
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=6.9e-09 Score=105.72 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=96.6
Q ss_pred ccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHH--------
Q 003321 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK-------- 256 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~-------- 256 (830)
++||+.+.++|.+++.. +..+.+.|+|+.|+|||+|++.+.+..+ ...+ .++|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~-~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-GPSQHILLYGPRGSGKTSLLKEFINELK-EKGY--KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT---EE--CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh-hcCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC--cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 58999999999998863 4578899999999999999999996431 2222 2224444333322211111
Q ss_pred -----HHHhhcCCCC-----CCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH-----------hHHHhhhc---CCC
Q 003321 257 -----VWGFVSGCDS-----MEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-----------VLEQLIFR---VPG 310 (830)
Q Consensus 257 -----i~~~l~~~~~-----~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~-----------~~~~l~~~---~~g 310 (830)
+...+..... .........+...++.+ .+++++||+||+.... .+..+... .+.
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1111111100 00011122233333433 3456999999997654 11122222 223
Q ss_pred ceEEEEecccccc-----------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 311 CKTLVVSRFKFST-----------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 311 s~iivTtr~~~~~-----------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
..+++++...... .....+.+++|+.+++++++...+-..... ...++..++|.+.+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3444444332111 223459999999999999998864322111 12345679999999999998764
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=9.1e-11 Score=118.70 Aligned_cols=215 Identities=20% Similarity=0.195 Sum_probs=134.8
Q ss_pred eCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecc-cccCccCCC-ccccCCCceEEeee
Q 003321 574 NFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEK-VSISQLPKS-SIPLKKMQKISFVL 650 (830)
Q Consensus 574 ~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~i~~lp~~-~~~l~~L~~L~l~~ 650 (830)
.+..+....+| .+|+.+++||.|+++++....... ..|.++..|-.|-+.+ |.|..+|.. +..|..|+.|.+.-
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34444456666 568899999999998887544333 3456677766665555 888888865 55677777777766
Q ss_pred ccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEEeeCcC-------------------------
Q 003321 651 CKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCH------------------------- 704 (830)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~------------------------- 704 (830)
|.+.......+. .+++|..|.+..+. +..++. ++..+.+++++.+..|.
T Consensus 150 n~i~Cir~~al~----dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 150 NHINCIRQDALR----DLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hhhcchhHHHHH----Hhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 655443333322 23444444444431 222222 23333333333322222
Q ss_pred ------------------------------------CCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEec
Q 003321 705 ------------------------------------SLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLN 747 (830)
Q Consensus 705 ------------------------------------~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 747 (830)
....-| ..|..|++|++|++++|.....-+..|..+..++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 111112 3467788899999888765555566788888888888
Q ss_pred cccccccCcchh-hhccCCCCcEEeccCccCCccCCccccccccCceeecC
Q 003321 748 ISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICE 797 (830)
Q Consensus 748 L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~ 797 (830)
|..| ++..+.. .+.++.+|++|+|.+|.+..-.|..+..+.+|..|++-
T Consensus 305 L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 305 LTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 8874 5555443 37889999999999999666677777778888877643
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.89 E-value=1e-07 Score=106.79 Aligned_cols=285 Identities=17% Similarity=0.201 Sum_probs=187.2
Q ss_pred hhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHHhhcCCCCCCC
Q 003321 191 GKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEP 269 (830)
Q Consensus 191 ~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~ 269 (830)
.+.++.+.|....+.+++.|..++|.|||||+...+. +.... ..+.|.+.++. .++..+...++..+....+...
T Consensus 23 ~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~~~~~--~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 23 VRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--LAADG--AAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred ccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--hcCcc--cceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 3577888888778999999999999999999999973 22222 24679998875 4577888888887753322111
Q ss_pred CCCc------------ccchHHHHhh--cCCcEEEEEeCCC---Ch---HhHHHhhhcCC-CceEEEEecccccc-----
Q 003321 270 NYVI------------PHWNLQIQSK--LGSRCLVVLDDVW---SL---AVLEQLIFRVP-GCKTLVVSRFKFST----- 323 (830)
Q Consensus 270 ~~~~------------~~~~~~~~~l--~~kr~LlVlDdv~---~~---~~~~~l~~~~~-gs~iivTtr~~~~~----- 323 (830)
.+.. ..+...+..+ -.++.++||||-. +. +.++-+....| +-..+||||.....
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 1100 0112222222 3568999999976 22 34666666655 88999999998754
Q ss_pred -cccceEEccC----CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCC-hHHHHHHHHH
Q 003321 324 -VLNDTYEVEL----LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP-EMYWTSAKKR 397 (830)
Q Consensus 324 -~~~~~~~l~~----L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~-~~~w~~~l~~ 397 (830)
..+...+++. ++.+|+-++|..... ....+.-++.+.+..+|-+-|+..++-.+++++ .+.- ...
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~---~~~ 249 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS---LRG 249 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH---hhh
Confidence 2234455554 899999999987541 112234688999999999999999998888432 2211 111
Q ss_pred hccCCCCcccchhhHHHHH-HHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhH
Q 003321 398 LSKGEPICESHENNLLDRM-AISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLL 476 (830)
Q Consensus 398 l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~ 476 (830)
+.. . ...+.+.| .--++.||+++|..++-||+++.= -+.|+..- ..++.+...+++|.+++++
T Consensus 250 LsG------~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-----tg~~ng~amLe~L~~~gLF 313 (894)
T COG2909 250 LSG------A-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-----TGEENGQAMLEELERRGLF 313 (894)
T ss_pred ccc------h-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-----hcCCcHHHHHHHHHhCCCc
Confidence 110 0 12233333 335689999999999999998742 14455443 2344677789999999987
Q ss_pred HHHhhhhccCCcccccccccchhhHHHHHHHHHhhccC
Q 003321 477 KIVKDARRAGDMYSSYYEISVTQHDVLRDLALHLSNQE 514 (830)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~e 514 (830)
-..-++. ...|+.|.++.||.+...+.+
T Consensus 314 l~~Ldd~----------~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 314 LQRLDDE----------GQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eeeecCC----------CceeehhHHHHHHHHhhhccc
Confidence 5322211 124899999999998766553
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.7e-10 Score=117.04 Aligned_cols=207 Identities=18% Similarity=0.219 Sum_probs=112.6
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC--ccccCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS--SIPLKK 642 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~--~~~l~~ 642 (830)
+.+++.+.++-+.......-.-...|+++|.|+++.+-+.+-. .-...+..|++|+.|+|+.|.+.....+ ...+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4445555554443211111123556777777777665432210 0112345677777777777766543332 224667
Q ss_pred CceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc--hhcCCCCCCC
Q 003321 643 MQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP--ADIGKMKSLQ 720 (830)
Q Consensus 643 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~ 720 (830)
|+.|.++.|.+... .+..+...||+|..|+|..|..+..-..+...++.|+.|+|++|..+ .++ ..++.|+.|.
T Consensus 199 lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 77777777766521 12222345777777777777533332233345667777888776543 333 4566777777
Q ss_pred EEEcccCCCCC-ccchh-----hcCCCCCcEeccccccccCcch--hhhccCCCCcEEeccCccC
Q 003321 721 ILRLYACPHLR-TLPAR-----ICELVCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 721 ~L~l~~~~~l~-~lp~~-----~~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~ 777 (830)
.|+++.|..-. .+|+. ...+++|++|+++.|+ +..++ ..+..+++|+.|.+..+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence 77777654321 12222 3456777888777743 33332 2244566666666666553
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.85 E-value=1.1e-07 Score=99.03 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcc---cchHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIP---HWNLQ 279 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~ 279 (830)
.+..++.|+|++|+||||+++.+++..... .+ .+.|+ +....+..+++..+...++.... ...... .+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~--~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-RV--VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce--EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHH
Confidence 345689999999999999999999653321 11 22233 23345677888888877644321 111111 11111
Q ss_pred H-H-hhcCCcEEEEEeCCCCh--HhHHHhhh---c----CCCceEEEEecccccc------------cccceEEccCCCH
Q 003321 280 I-Q-SKLGSRCLVVLDDVWSL--AVLEQLIF---R----VPGCKTLVVSRFKFST------------VLNDTYEVELLRE 336 (830)
Q Consensus 280 ~-~-~l~~kr~LlVlDdv~~~--~~~~~l~~---~----~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~ 336 (830)
+ . ...++++++|+||++.. ..++.+.. . .+...|++|....... .....+++++++.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 1 1 12678899999999864 34444432 1 1123445555432110 1234678999999
Q ss_pred HHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 337 DESLSLFCYSAFGQKT-IPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 337 ~e~~~Lf~~~af~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
+|..+++...+-.... ......++..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998766532211 1112345789999999999999999988876
No 35
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=98.80 E-value=1.1e-07 Score=86.44 Aligned_cols=135 Identities=35% Similarity=0.533 Sum_probs=119.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Q 003321 3 VTDLFAGEIAAELLKMLISICRRSSLCKSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKV 82 (830)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~l~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~ 82 (830)
++++++|++++.+++.+.....+...++...+.+...++.+.|.++.+.....+..+.+..+++...+.|++|...++.+
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~ 85 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKC 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 46677788999999999999999999999999999999999999999998888888877899999999999999999999
Q ss_pred hcCCchhhhcchHHHHHHHHHHHHhhhhhccccchhhhhhhhhhHHhhhhHHhhh
Q 003321 83 LASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHVLADVHHMRFETAERFDRM 137 (830)
Q Consensus 83 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (830)
....+|++++...+.++++..++.+.+|+...++.+...|+.+.+..+.+..+++
T Consensus 86 sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl 140 (147)
T PF05659_consen 86 SKVRRWNLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKL 140 (147)
T ss_pred ccccHHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988889999999999999999999888887788877777665444333
No 36
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.72 E-value=9e-08 Score=99.21 Aligned_cols=290 Identities=20% Similarity=0.199 Sum_probs=193.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
...+.+.++|.|||||||++-.+. + +..-|...++.+......+...+...+...+.-..... ..........
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a--~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g----~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAA--H-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG----DSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhH--h-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc----hHHHHHHHHH
Confidence 456889999999999999999998 5 78889988866766666666666666655443322111 1122234455
Q ss_pred hcCCcEEEEEeCCCCh-----HhHHHhhhcCCCceEEEEecccccccccceEEccCCCHH-HHHHHHHHHhcCCCC--CC
Q 003321 283 KLGSRCLVVLDDVWSL-----AVLEQLIFRVPGCKTLVVSRFKFSTVLNDTYEVELLRED-ESLSLFCYSAFGQKT--IP 354 (830)
Q Consensus 283 l~~kr~LlVlDdv~~~-----~~~~~l~~~~~gs~iivTtr~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~af~~~~--~~ 354 (830)
..++|.++|+||..+. .....+..+.+.-.|+.|+|.........++.++.|+.. ++.++|...+.-... .-
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 5789999999998754 234556666777889999998877766778888888765 799999776532111 11
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHH----HhccCCCCcccchhhHHHHHHHhHhcCChhHHHH
Q 003321 355 PSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKK----RLSKGEPICESHENNLLDRMAISIQYLPKKVKEC 430 (830)
Q Consensus 355 ~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~----~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~c 430 (830)
.........+|.++..|.|++|...++..+.-....--.-+. .+......-..........+.+||.-|..-.+--
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 222345889999999999999999999988765332221111 1222211112224557788999999999999999
Q ss_pred HhhhCCCCCCCccCHHHHHHHHHHhcCC---CHHHHHHHHHHHhhhhhHHHHhhhhccCCcccccccccchhhHHHHHHH
Q 003321 431 FLDLGSFPEDKKIPLEVLINMWVEIHDL---DEEEAFAILVELSDRNLLKIVKDARRAGDMYSSYYEISVTQHDVLRDLA 507 (830)
Q Consensus 431 fl~~a~fp~~~~i~~~~Li~~Wia~~~~---~~~~~~~~l~~L~~r~l~~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~ 507 (830)
|.-++.|...+.-. -..|.+.|.. +.-.....+..+++++++....... ...|+.-+..+.|+
T Consensus 245 ~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~----------~a~~Rl~eT~r~Ya 310 (414)
T COG3903 245 FGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG----------RARYRLLETGRRYA 310 (414)
T ss_pred hcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh----------HHHHHHHHHHHHHH
Confidence 99999998876644 3445554433 3345666677788888765433211 11356667777777
Q ss_pred HHhhcc
Q 003321 508 LHLSNQ 513 (830)
Q Consensus 508 ~~~~~~ 513 (830)
..+..+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=8.2e-10 Score=116.94 Aligned_cols=195 Identities=24% Similarity=0.331 Sum_probs=154.8
Q ss_pred CccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCC
Q 003321 616 NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSL 695 (830)
Q Consensus 616 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L 695 (830)
.+..-...+++.|.+..+|..+..+..|+.+.+..|.+.. ++.....+..|++|+|+.| .+..+|..++.|+ |
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-L 145 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-c
Confidence 3444566788889999999988888888888887766543 2222245778889999887 5788999999886 8
Q ss_pred CEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCc
Q 003321 696 KNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMREC 775 (830)
Q Consensus 696 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~ 775 (830)
+.|-+++| +++.+|..++.++.|..|+.+.| .+..+|..++.+.+|+.|.+.. +.+..+|..+..| .|..||++.|
T Consensus 146 kvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 146 KVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred eeEEEecC-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeecccC
Confidence 99999885 48999999999999999999885 4678899999999999999998 5677899888855 5889999988
Q ss_pred cCCccCCccccccccCceeecCchhhhhH---HHHhhhCCCceeeecccc
Q 003321 776 SQIWSLPKSVNSLKSLRQVICEEDVSWAW---KDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 776 ~~l~~lp~~~~~l~~L~~l~~~~~~~~~~---~~l~~~lp~L~~~~~~~~ 822 (830)
+ +..+|-.|.+++.|++|-+++|.-.+- .-+.|.+.-.+.+..+-|
T Consensus 222 k-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 222 K-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred c-eeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 7 899999999999999999998855542 224556665666666666
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.3e-08 Score=120.18 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=60.3
Q ss_pred ccccCeeeecccc--cCccCCC-ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCC
Q 003321 617 LTNLRSLWLEKVS--ISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 693 (830)
Q Consensus 617 l~~L~~L~L~~~~--i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~ 693 (830)
.++|++|-+.+|. +..++.. +..++.|++||+++|.....+|..+ +.+-+|++|+++++ .+..+|.++++|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t-~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDT-GISHLPSGLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH----hhhhhhhcccccCC-CccccchHHHHHH
Confidence 3456666666664 4444443 3446666666666655444444433 33556666666664 3556666666666
Q ss_pred CCCEEEeeCcCCCCccchhcCCCCCCCEEEccc
Q 003321 694 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYA 726 (830)
Q Consensus 694 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~ 726 (830)
+|.+|++..+..+..+|..+..|++|++|.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeec
Confidence 666666666555555554444566666666644
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.2e-09 Score=109.21 Aligned_cols=207 Identities=19% Similarity=0.234 Sum_probs=136.1
Q ss_pred hhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC---ccCCCccccCCCceEEeeecccccccccccc
Q 003321 586 FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS---QLPKSSIPLKKMQKISFVLCKINNSLDQSVV 662 (830)
Q Consensus 586 ~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 662 (830)
-=+++++||...+.++........ .....|++++.|||++|-+. .+.+....|++|+.|+++.|++.........
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HhhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 346788999999887765432221 34668899999999998655 3334456789999999998887654443322
Q ss_pred CcCCCCCccceeccccccccC-ccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc--hhhcC
Q 003321 663 DLPKTLPCLTELTFDHCDDLM-KLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICE 739 (830)
Q Consensus 663 ~~~~~~~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~ 739 (830)
..+++|+.|.+++|.... .+....-.+++|+.|+|..|..+..-......++.|+.|+|++|+.+. ++ ...+.
T Consensus 194 ---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~ 269 (505)
T KOG3207|consen 194 ---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGT 269 (505)
T ss_pred ---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccc
Confidence 247888889998886331 222334567888888888875433333344457788889998866543 33 34678
Q ss_pred CCCCcEeccccccccC-cchhh-----hccCCCCcEEeccCccCCccCCc--cccccccCceeecCch
Q 003321 740 LVCLKYLNISQCVSLS-CLPQG-----IGNLIRLEKIDMRECSQIWSLPK--SVNSLKSLRQVICEED 799 (830)
Q Consensus 740 l~~L~~L~L~~c~~l~-~lp~~-----l~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~l~~~~~ 799 (830)
|+.|..|+++.|..-+ .+|+. ...+++|+.|++..|+ +...++ .+..+++|+.+.|..+
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccc
Confidence 8888888888754322 22332 3467888889888887 544442 3455666777765544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=9e-09 Score=100.54 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=53.9
Q ss_pred CccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEecc
Q 003321 669 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 748 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 748 (830)
..|+.|+|++| .+.++..++.-++.++.|+++.|. +..+- ++..|++|+.|+|++| .+.++..+-.+|.+.+.|.|
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 34555555554 244444444445555555555543 22221 2444555555555542 23333333334444444444
Q ss_pred ccccccCcchhhhccCCCCcEEeccCccCCccCC--ccccccccCceeecCch
Q 003321 749 SQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEED 799 (830)
Q Consensus 749 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~l~~~~~ 799 (830)
++ +.++++ ++++.|.+|..|++++|. +..+. ..|++|+.|+.+.+.+|
T Consensus 360 a~-N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQ-NKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hh-hhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 44 233333 234444444444544444 33222 13444444444444333
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.60 E-value=6.6e-08 Score=102.11 Aligned_cols=135 Identities=23% Similarity=0.419 Sum_probs=80.5
Q ss_pred cccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCC
Q 003321 638 IPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMK 717 (830)
Q Consensus 638 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 717 (830)
..+.++..|+++.|.+.. ++ ...++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP-------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s----- 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LP-------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES----- 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cC-------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc-----
Confidence 346889999999885432 22 223579999999999998888755 368999999999878877754
Q ss_pred CCCEEEccc--CCCCCccchhhcCCCCCcEecccccccc--CcchhhhccCCCCcEEeccCccCCccCCccccccccCce
Q 003321 718 SLQILRLYA--CPHLRTLPARICELVCLKYLNISQCVSL--SCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQ 793 (830)
Q Consensus 718 ~L~~L~l~~--~~~l~~lp~~~~~l~~L~~L~L~~c~~l--~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 793 (830)
|+.|++.+ |..+..+|.++ +.|.+.+++.. ..+|. .-.++|++|++++|..+ .+|..+. .+|+.
T Consensus 114 -Le~L~L~~n~~~~L~~LPssL------k~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~ 181 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNGL------TSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQS 181 (426)
T ss_pred -cceEEeCCCCCcccccCcchH------hheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcE
Confidence 55555654 33456666544 34444322211 11111 01145666666666633 3443333 35555
Q ss_pred eecCch
Q 003321 794 VICEED 799 (830)
Q Consensus 794 l~~~~~ 799 (830)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 555443
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=2.9e-08 Score=109.70 Aligned_cols=182 Identities=25% Similarity=0.375 Sum_probs=94.8
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCcc-ccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLT-NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLP 665 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 665 (830)
+..++.+..|.+.++...... .....+. +|+.|++++|.+..+|..+..+++|+.|+++.|.+.......
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~----~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~----- 182 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIP----PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL----- 182 (394)
T ss_pred hhcccceeEEecCCcccccCc----cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-----
Confidence 444455666655544322111 1122232 666666666666666655666666666666665544322111
Q ss_pred CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 666 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
...++|+.|+++++ .+..+|..++.+.+|++|.+++|. ....+..+.++.++..|.+.+ ..+..+|..++.+++|++
T Consensus 183 ~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 183 SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLET 259 (394)
T ss_pred hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccce
Confidence 13455666666665 355565555555556666666543 233444555556666555443 233333555566666666
Q ss_pred eccccccccCcchhhhccCCCCcEEeccCccCCccCC
Q 003321 746 LNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 782 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 782 (830)
|++++ +.+..++. ++.+.+|+.|+++++.....+|
T Consensus 260 L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 260 LDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ecccc-cccccccc-ccccCccCEEeccCccccccch
Confidence 66665 34444444 5566666666666665443333
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.6e-08 Score=98.85 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=97.7
Q ss_pred cccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCC
Q 003321 638 IPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMK 717 (830)
Q Consensus 638 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 717 (830)
..++.|..+||++|.+.. ++.++ +..|.++.|++++|. +..+.+ +..|++|+.|||++|. +.++.-+-.+|.
T Consensus 281 dTWq~LtelDLS~N~I~~-iDESv----KL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ-IDESV----KLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhh-hhhhh----hhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhc
Confidence 345677888888776653 22222 457888889988874 444433 7788999999999975 555544555788
Q ss_pred CCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcch--hhhccCCCCcEEeccCccCCccCCc
Q 003321 718 SLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 718 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
|.++|.|++| .++.+ +++++|-+|.+|++++| ++..+. ..||+||.|+++.+.+|+ +..+|+
T Consensus 353 NIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred CEeeeehhhh-hHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 9999999984 45555 46888999999999985 445443 459999999999999999 666665
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=7.2e-08 Score=90.99 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred CccceeccccccccCccccccC-CCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhh-cCCCCCcEe
Q 003321 669 PCLTELTFDHCDDLMKLPPSIC-GLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI-CELVCLKYL 746 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L 746 (830)
.+++.|+|++|. +..+. .++ .+.+|+.|++++|. ++.++ .+..+++|++|++++|. +..++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 345666666653 33332 354 56788888888865 55554 57778888888888744 45554444 357888888
Q ss_pred ccccccccCcch--hhhccCCCCcEEeccCccCCccCCc----cccccccCceeec
Q 003321 747 NISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK----SVNSLKSLRQVIC 796 (830)
Q Consensus 747 ~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~l~~ 796 (830)
++++|. +..+. ..+..+++|+.|++.+|+ +...+. .+..+++|+.||-
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 888753 33322 346778888888888888 333343 3556777777753
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.53 E-value=1.9e-06 Score=86.77 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=87.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
..+.+.++|++|+|||+||+++++. ...... .+.|+.+... ......++ +.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~-~~~y~~~~~~---~~~~~~~~----------------------~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQR-TAIYIPLSKS---QYFSPAVL----------------------ENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCC-CeEEeeHHHh---hhhhHHHH----------------------hhc
Confidence 3457899999999999999999964 222222 3446665421 00111111 111
Q ss_pred cCCcEEEEEeCCCCh---HhHHHh----hh-c-CCCceEEEEecccccc-------------cccceEEccCCCHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVLEQL----IF-R-VPGCKTLVVSRFKFST-------------VLNDTYEVELLREDESLS 341 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~~~l----~~-~-~~gs~iivTtr~~~~~-------------~~~~~~~l~~L~~~e~~~ 341 (830)
.+.-+|||||+|.. ..|+.. .. . ..|..++|+|.+.... .....+++++++.++.++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 12348999999963 344421 11 1 2366666655544221 234588999999999999
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 342 LFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 342 Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
++.+.++...- ...++...-|++++.|..-++..+
T Consensus 169 iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99998875432 223457888899988776655444
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=6e-09 Score=105.77 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCCCccccCeeeecccccCcc-CCCccccCCCceEEeee-ccccccccccccCcCCCCCccceeccccccccCccccccC
Q 003321 613 VCSNLTNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVL-CKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSIC 690 (830)
Q Consensus 613 ~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~ 690 (830)
.|+.+++||.|||++|.|+.+ |+.|..+..|-.|-+.+ |++.....+. +..+..|+.|.+.-|..--.....+.
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~----F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA----FGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH----hhhHHHHHHHhcChhhhcchhHHHHH
Confidence 366777777777777777754 44566677666665555 4433222211 23355556665554432222334566
Q ss_pred CCCCCCEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCC---------------------------------------
Q 003321 691 GLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHL--------------------------------------- 730 (830)
Q Consensus 691 ~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l--------------------------------------- 730 (830)
.|++|..|.+.+|. ++.++. .+..+..++.+.+..++..
T Consensus 162 dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred Hhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 77788888877754 555554 5666667777666544310
Q ss_pred --------C--------------ccc-hhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCC-cccc
Q 003321 731 --------R--------------TLP-ARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVN 786 (830)
Q Consensus 731 --------~--------------~lp-~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~ 786 (830)
+ ..| ..|+.|++|+.|+|++|.....-+.+|..+..++.|.|..|. +..+. ..+.
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~ 319 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQ 319 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhh
Confidence 0 011 235667777777777644333334457777777777777776 44333 2455
Q ss_pred ccccCceeecCch
Q 003321 787 SLKSLRQVICEED 799 (830)
Q Consensus 787 ~l~~L~~l~~~~~ 799 (830)
++..|+.|++.+|
T Consensus 320 ~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 320 GLSGLKTLSLYDN 332 (498)
T ss_pred ccccceeeeecCC
Confidence 6777777777665
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=2.2e-07 Score=107.58 Aligned_cols=113 Identities=18% Similarity=0.349 Sum_probs=94.2
Q ss_pred ccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccc
Q 003321 670 CLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNIS 749 (830)
Q Consensus 670 ~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 749 (830)
.++.|+|++|...+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888887667888889999999999999987667888889999999999999988778899999999999999999
Q ss_pred cccccCcchhhhccC-CCCcEEeccCccCCccCC
Q 003321 750 QCVSLSCLPQGIGNL-IRLEKIDMRECSQIWSLP 782 (830)
Q Consensus 750 ~c~~l~~lp~~l~~l-~~L~~L~l~~~~~l~~lp 782 (830)
+|.....+|..++.+ .++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 887777888887664 467788888887666555
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=1.1e-05 Score=88.91 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=100.9
Q ss_pred cccccchhhHH---HHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHH
Q 003321 184 MGIGMALGKNK---VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~---l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (830)
.+||.+..+.. +..++. ......+.++|++|+||||+|+.+++. .... |+.++... ...++ +.++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~-~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~------~~~l~a~~~~~~~i-r~ii~ 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIE-AGRLSSMILWGPPGTGKTTLARIIAGA--TDAP------FEALSAVTSGVKDL-REVIE 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHH-cCCCceEEEECCCCCCHHHHHHHHHHH--hCCC------EEEEecccccHHHH-HHHHH
Confidence 35777665444 666664 455667888999999999999999853 2222 33333221 22222 22222
Q ss_pred hhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhcCC-CceEEEE--ecccccc------cccce
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRVP-GCKTLVV--SRFKFST------VLNDT 328 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~-gs~iivT--tr~~~~~------~~~~~ 328 (830)
.... ....+++.+|++|+++.. .+.+.+..... |..+++. |.+.... .....
T Consensus 83 ~~~~-----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~ 145 (413)
T PRK13342 83 EARQ-----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQV 145 (413)
T ss_pred HHHH-----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhcccee
Confidence 2110 001357889999999854 45555554332 4444443 3332211 22367
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
+++.+++.++...++.+.+-..........++....|++.|+|.|..+.-+..
T Consensus 146 ~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 146 FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 89999999999999987543211100123356788899999999877654433
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=1.2e-07 Score=104.89 Aligned_cols=175 Identities=30% Similarity=0.422 Sum_probs=126.7
Q ss_pred CCCccccCeeeecccccCccCCCccccC-CCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLK-KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 692 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l 692 (830)
+..++.+..|++.++.+.++|.....+. +|+.|+++.+.+.... .....+++|+.|+++.| .+..+|...+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFN-DLSDLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-----hhhhccccccccccCCc-hhhhhhhhhhhh
Confidence 4455678888888888888888777774 8888888877655321 11245778888888887 467777777788
Q ss_pred CCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEec
Q 003321 693 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 772 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 772 (830)
+.|+.|++++|. +..+|..++.+.+|++|.+++|. ....+..+..+.++..|.+.+ +.+..++..++.+++|+.|++
T Consensus 186 ~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 186 SNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccceecc
Confidence 888888888854 67777766666678888887754 344556677778888887655 445555677788888888888
Q ss_pred cCccCCccCCccccccccCceeecCch
Q 003321 773 RECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 773 ~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
++|. +..++. ++.+.+|+.++++++
T Consensus 263 s~n~-i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SNNQ-ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccc-cccccc-ccccCccCEEeccCc
Confidence 8877 666665 777888888888765
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-08 Score=101.45 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=133.0
Q ss_pred hhhhhcccCceEEEccccCCccccCCC-CCCCCccccCeeeecccccCc--------------cCCCccccCCCceEEee
Q 003321 585 PFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQ--------------LPKSSIPLKKMQKISFV 649 (830)
Q Consensus 585 ~~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~--------------lp~~~~~l~~L~~L~l~ 649 (830)
+.+..+++|++|+|+++.+.......+ ..++++..|+.|.|.+|++.. ..+....-++|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 345567788899888887665444433 235667888888888888752 11223445788888888
Q ss_pred eccccccccccccCcCCCCCccceeccccccccC----ccccccCCCCCCCEEEeeCcCCCC----ccchhcCCCCCCCE
Q 003321 650 LCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQI 721 (830)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~ 721 (830)
.|+..+.-...+....+..+.|+.+.+..|+.-. -+...+.++++|+.|||.+|.... .+.+.++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 8877665444444445566888888888775332 234567789999999999987543 35567788999999
Q ss_pred EEcccCCCCCccchh-----hcCCCCCcEeccccccccC----cchhhhccCCCCcEEeccCccC
Q 003321 722 LRLYACPHLRTLPAR-----ICELVCLKYLNISQCVSLS----CLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 722 L~l~~~~~l~~lp~~-----~~~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
|++++|..-..-... -...|+|+.|.+.+|.... .+-..+...+.|..|+|++|..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999998754432222 1347899999999876443 2333456688999999999983
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.42 E-value=1.7e-05 Score=90.06 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=116.0
Q ss_pred cccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccc--c-ccccC-CceEEEEecCCCCHHHH
Q 003321 182 NLMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQ--V-TSYFN-NRILFLTVSQSPNVEQL 253 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~--~-~~~F~-~~~~wv~v~~~~~~~~l 253 (830)
+..+.||+.++++|...|.. +....++-|+|++|.|||+.++.|.+.-. . +...+ ..+++|+.....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45678999999999999854 23346788999999999999999985321 1 11122 33457776666778888
Q ss_pred HHHHHHhhcCCCCCCCCCCcccchHHHHhh---cCCcEEEEEeCCCChH-----hHHHhh--hcCCCceEEE--Eecccc
Q 003321 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVWSLA-----VLEQLI--FRVPGCKTLV--VSRFKF 321 (830)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l---~~kr~LlVlDdv~~~~-----~~~~l~--~~~~gs~iiv--Ttr~~~ 321 (830)
...|+.++.+..+.........+...+..+ .+...+||||+|+... .+-.|. ...++++|+| +|....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 889988885543222211122233333333 2234689999998432 122222 1234666655 232111
Q ss_pred c--------c--cccceEEccCCCHHHHHHHHHHHhcCCC-CCCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 322 S--------T--VLNDTYEVELLREDESLSLFCYSAFGQK-TIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 322 ~--------~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
. . .....+..++.+.++-.+++..++-... ...+...+-+|+.++...|-.=.||.++-...
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 1 0 1123356688999999999988774321 12222233334434433344555665555444
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.41 E-value=2.2e-05 Score=81.27 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=95.5
Q ss_pred HhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHHhhcCCCCCCCCCCcccch
Q 003321 199 VIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEPNYVIPHWN 277 (830)
Q Consensus 199 L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~ 277 (830)
+.+...+.-.-.||++|+||||||+.+.. .....| ..++-. .+++++...+ +..
T Consensus 42 ~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f------~~~sAv~~gvkdlr~i~-e~a---------------- 96 (436)
T COG2256 42 AVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF------EALSAVTSGVKDLREII-EEA---------------- 96 (436)
T ss_pred HHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCce------EEeccccccHHHHHHHH-HHH----------------
Confidence 33456777788999999999999999984 444444 223322 2344443322 221
Q ss_pred HHHHhhcCCcEEEEEeCCC--ChHhHHHhhhcCC-CceEEEEeccccc--c------cccceEEccCCCHHHHHHHHHHH
Q 003321 278 LQIQSKLGSRCLVVLDDVW--SLAVLEQLIFRVP-GCKTLVVSRFKFS--T------VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 278 ~~~~~l~~kr~LlVlDdv~--~~~~~~~l~~~~~-gs~iivTtr~~~~--~------~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
......|++.+|++|.|. +..+-+.|++... |.-|+|-+..+.. . ....++++++|+.++-.+++.+.
T Consensus 97 -~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 97 -RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred -HHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 011125899999999998 4566777777544 6666664444332 2 34578999999999999999884
Q ss_pred hcCCCC-CC---CchhHHHHHHHHHHcCCchHH
Q 003321 347 AFGQKT-IP---PSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 347 af~~~~-~~---~~~~~~~~~~i~~~c~GlPLa 375 (830)
+-.... .. ....++...-++..++|---+
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 432221 11 112345777888888886544
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-08 Score=99.75 Aligned_cols=193 Identities=20% Similarity=0.242 Sum_probs=89.7
Q ss_pred ccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccCCCceEEeeeccccccccccccCcCCCCC
Q 003321 591 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP 669 (830)
Q Consensus 591 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 669 (830)
+.|++|++++.......... .++.+.+|+.|.|+++.+. .+...+.+-.+|+.|++++|
T Consensus 185 sRlq~lDLS~s~it~stl~~--iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~------------------ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHG--ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC------------------ 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHH--HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc------------------
Confidence 35777777654332222211 2445566667777766655 23334444455555555544
Q ss_pred ccceeccccccccCccc--cccCCCCCCCEEEeeCcCCCCccc----hhcCCCCCCCEEEcccCCCC---CccchhhcCC
Q 003321 670 CLTELTFDHCDDLMKLP--PSICGLQSLKNLSVTNCHSLQELP----ADIGKMKSLQILRLYACPHL---RTLPARICEL 740 (830)
Q Consensus 670 ~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp----~~i~~l~~L~~L~l~~~~~l---~~lp~~~~~l 740 (830)
..+++.. --+.+++.|+.|+|++|....+.- ..++ ++|..|+|+||..- ..+..-...+
T Consensus 245 ----------sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 245 ----------SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred ----------cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 3333221 113344555555555554332211 1111 34555555554321 1111122345
Q ss_pred CCCcEeccccccccCc-chhhhccCCCCcEEeccCccCCccCCc---cccccccCceeecCchhhhh-HHHHhhhCCCce
Q 003321 741 VCLKYLNISQCVSLSC-LPQGIGNLIRLEKIDMRECSQIWSLPK---SVNSLKSLRQVICEEDVSWA-WKDLEKTLPNLH 815 (830)
Q Consensus 741 ~~L~~L~L~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~---~~~~l~~L~~l~~~~~~~~~-~~~l~~~lp~L~ 815 (830)
++|.+|||++|..++. .-..+-.++.|++|.++.|. ...|. .+.+.++|.+|+..++.+.. ..-+...+|+|+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 5666666666554442 22234455566666666654 22332 23444556666555554442 233455666666
Q ss_pred ee
Q 003321 816 VQ 817 (830)
Q Consensus 816 ~~ 817 (830)
+.
T Consensus 391 in 392 (419)
T KOG2120|consen 391 IN 392 (419)
T ss_pred cc
Confidence 54
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=1.5e-05 Score=77.00 Aligned_cols=169 Identities=20% Similarity=0.201 Sum_probs=91.3
Q ss_pred ccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..+||.+.-++++.-++.. .+.+.-+-.||++|+||||||.-+.+. ....|. +.+.+......++.. ++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~----~~sg~~i~k~~dl~~-il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK----ITSGPAIEKAGDLAA-IL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE----EEECCC--SCHHHHH-HH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE----eccchhhhhHHHHHH-HH
Confidence 4678988777776555431 245778999999999999999999954 444441 333221111222211 11
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh------------cCCCc-----------eE
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF------------RVPGC-----------KT 313 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~------------~~~gs-----------~i 313 (830)
.. + +++-+|++|++... .+-+.+.+ .+++. -|
T Consensus 97 ~~----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 97 TN----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred Hh----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11 1 24557888999853 22222222 22322 23
Q ss_pred EEEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhc
Q 003321 314 LVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR 384 (830)
Q Consensus 314 ivTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 384 (830)
=.|||..... ...-..+++..+.+|-.++..+.|-.-+ -.-.++.+.+|+++|.|-|--+.-+-+.++
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3577776554 2233468999999999999987663221 233467899999999999976655444443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=8.5e-07 Score=93.85 Aligned_cols=133 Identities=22% Similarity=0.394 Sum_probs=86.8
Q ss_pred CccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCC
Q 003321 616 NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSL 695 (830)
Q Consensus 616 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L 695 (830)
.+.+++.|++++|.++.+|. -..+|+.|.+..|.....++..+ .++|++|++++|..+..+|+ +|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L------P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI------PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh------hhhhhheEccCccccccccc------cc
Confidence 34677888888888888872 22468889988876654444432 35899999999988888885 46
Q ss_pred CEEEeeCc--CCCCccchhcCCCCCCCEEEcccCCCC--CccchhhcCC-CCCcEeccccccccCcchhhhccCCCCcEE
Q 003321 696 KNLSVTNC--HSLQELPADIGKMKSLQILRLYACPHL--RTLPARICEL-VCLKYLNISQCVSLSCLPQGIGNLIRLEKI 770 (830)
Q Consensus 696 ~~L~L~~c--~~l~~lp~~i~~l~~L~~L~l~~~~~l--~~lp~~~~~l-~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 770 (830)
+.|++.++ ..+..+|. +|+.|.+.++... ..+|. .+ ++|++|++++|..+ .+|..+. .+|+.|
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 66667543 23455554 4566766543311 11221 23 57999999998755 3554443 588999
Q ss_pred eccCc
Q 003321 771 DMREC 775 (830)
Q Consensus 771 ~l~~~ 775 (830)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 98775
No 56
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=8.8e-07 Score=83.66 Aligned_cols=125 Identities=22% Similarity=0.314 Sum_probs=50.1
Q ss_pred cCCCCCCCEEEeeCcCCCCccchhcC-CCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhh-ccCCC
Q 003321 689 ICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGI-GNLIR 766 (830)
Q Consensus 689 i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l-~~l~~ 766 (830)
+.+..+++.|+|.+|. +..+ +.++ .+.+|+.|++++|. +..++ .+..+++|+.|++++ +.++.++..+ .++++
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT
T ss_pred cccccccccccccccc-cccc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCC-CCCCccccchHHhCCc
Confidence 5566789999999976 5554 3566 58899999999964 55564 577899999999998 4666776555 47999
Q ss_pred CcEEeccCccCCccCCc--cccccccCceeecCchhhhh----HHHHhhhCCCceeeec
Q 003321 767 LEKIDMRECSQIWSLPK--SVNSLKSLRQVICEEDVSWA----WKDLEKTLPNLHVQVP 819 (830)
Q Consensus 767 L~~L~l~~~~~l~~lp~--~~~~l~~L~~l~~~~~~~~~----~~~l~~~lp~L~~~~~ 819 (830)
|+.|++++|. +..+.+ .+..+++|+.|++.+|.... ...+...+|+|++...
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999998 555443 56788999999998885543 2335678999988744
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=7.7e-07 Score=103.10 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=94.3
Q ss_pred CCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEecc
Q 003321 694 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMR 773 (830)
Q Consensus 694 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~ 773 (830)
.++.|+|++|.....+|..++.|++|+.|+|++|.....+|..++.+++|+.|+|++|.....+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988777899999999999999999988878999999999999999999987777899999999999999999
Q ss_pred CccCCccCCcccccc-ccCceeecCchh
Q 003321 774 ECSQIWSLPKSVNSL-KSLRQVICEEDV 800 (830)
Q Consensus 774 ~~~~l~~lp~~~~~l-~~L~~l~~~~~~ 800 (830)
+|.....+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999888999887764 456677776663
No 58
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.3e-06 Score=79.11 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=71.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
-+++.|.|+.|+||||++++++.+.. -+..+++++..+.........++. +...+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~------------------~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLL------------------EYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhH------------------HHHHHhhc
Confidence 46899999999999999999985432 223445776654322111000010 11111123
Q ss_pred CCcEEEEEeCCCChHhHHHhhh----cCCCceEEEEecccccc---------cccceEEccCCCHHHH
Q 003321 285 GSRCLVVLDDVWSLAVLEQLIF----RVPGCKTLVVSRFKFST---------VLNDTYEVELLREDES 339 (830)
Q Consensus 285 ~kr~LlVlDdv~~~~~~~~l~~----~~~gs~iivTtr~~~~~---------~~~~~~~l~~L~~~e~ 339 (830)
.++.+|+||++.....|..... ..+..+|++|+...... +....+++.+|+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4678899999998877665543 45678999998876433 2235678899987764
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=6.4e-05 Score=84.66 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=107.1
Q ss_pred cccccchhhHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 184 MGIGMALGKNKVKEMVIGR---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
.++|.+..++++.+|+... ...+.+.|+|++|+||||+|+.++++.. | .++-++.++..+...+ ..++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~--~~ielnasd~r~~~~i-~~~i~~ 87 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----W--EVIELNASDQRTADVI-ERVAGE 87 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----C--CEEEEcccccccHHHH-HHHHHH
Confidence 4689999999999998532 2378899999999999999999996431 2 2334555554433333 233322
Q ss_pred hcCCCCCCCCCCcccchHHHHhhc-CCcEEEEEeCCCChH------hHHHhhhc--CCCceEEEEeccccc------ccc
Q 003321 261 VSGCDSMEPNYVIPHWNLQIQSKL-GSRCLVVLDDVWSLA------VLEQLIFR--VPGCKTLVVSRFKFS------TVL 325 (830)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~l~-~kr~LlVlDdv~~~~------~~~~l~~~--~~gs~iivTtr~~~~------~~~ 325 (830)
...... +. .++-+||+|+++... .+..+... .++..||+|+.+..- ...
T Consensus 88 ~~~~~s----------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 88 AATSGS----------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred hhccCc----------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 211110 11 367799999998542 23444321 234556666644321 123
Q ss_pred cceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 326 NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 326 ~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
...+++++++.++....+...+...... ..++....|++.++|-.-.+....
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999999888887766433221 224578999999999776654433
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=7.3e-05 Score=84.74 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=106.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc-------------------cccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (830)
..+||.+.-++.|.+++..+.-...+.++|..|+||||+|+.+.+..... +.|.. +++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D-viEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD-YVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce-EEEec
Confidence 35689988889999988754445677799999999999999876432111 11211 22333
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTt 317 (830)
.+....++++. .+++.+... -..++.-++|||+++.. ..++.++. . .+..++|++|
T Consensus 95 Aas~rgVDdIR-eLIe~a~~~-----------------P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 95 AASNRGVDEMA-ALLERAVYA-----------------PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred ccccccHHHHH-HHHHHHHhc-----------------cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 33333333322 222221100 01245568889999854 44665554 2 3467888877
Q ss_pred cccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHH
Q 003321 318 RFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKV 378 (830)
Q Consensus 318 r~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 378 (830)
++...- .....+++..++.++..+.+.+.+-..+ . ...++....|++.++|..- |+.+
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-I--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 765422 2346789999999999999887653322 1 2235578899999988654 4444
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.29 E-value=5.2e-07 Score=90.83 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=64.5
Q ss_pred HHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCCCCC-
Q 003321 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNYV- 272 (830)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~- 272 (830)
++.+..-..-..++|+|++|+|||||++.+|++.... +|+..+ |+.+.+. +++.++++.+...+-......+...
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~-~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYL-IVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEE-EEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 4444433456789999999999999999999865444 888655 8887766 7899999988443322211111000
Q ss_pred cc---cchHHHHh--hcCCcEEEEEeCCCCh
Q 003321 273 IP---HWNLQIQS--KLGSRCLVVLDDVWSL 298 (830)
Q Consensus 273 ~~---~~~~~~~~--l~~kr~LlVlDdv~~~ 298 (830)
.. ......+. ..++++++++|++...
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 00 11111111 2589999999999753
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=5.6e-06 Score=77.24 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=68.4
Q ss_pred ccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC
Q 003321 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS 266 (830)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 266 (830)
|++.....+...+.. ...+.+.|+|++|+||||+|+.+++... .....++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~-~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 2 GQEEAIEALREALEL-PPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred chHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 566677777777753 4567889999999999999999996432 122345566665543322221111100
Q ss_pred CCCCCCcccchHHHHhhcCCcEEEEEeCCCCh-----HhHHHhhhc-------CCCceEEEEecccc
Q 003321 267 MEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL-----AVLEQLIFR-------VPGCKTLVVSRFKF 321 (830)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~-------~~gs~iivTtr~~~ 321 (830)
............++.++|+||++.. ..+..+... ..+..+|+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111122456789999999953 222222222 25778888887654
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=1.5e-06 Score=79.39 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhccccccc--ccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHH
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTS--YFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~--~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (830)
+-+++.|+|.+|+|||++++.++++..... .....++|+.++...+...+...++..+...... ............+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHH
Confidence 456899999999999999999985421100 0034567999988889999999999998765433 1112222233344
Q ss_pred hh-cCCcEEEEEeCCCCh---HhHHHhhh--cCCCceEEEEecc
Q 003321 282 SK-LGSRCLVVLDDVWSL---AVLEQLIF--RVPGCKTLVVSRF 319 (830)
Q Consensus 282 ~l-~~kr~LlVlDdv~~~---~~~~~l~~--~~~gs~iivTtr~ 319 (830)
.+ ..+..+||+|+++.. +.++.+.. ..++.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44 344569999999865 33444433 2456677776654
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=6.5e-05 Score=81.26 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=102.0
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CC---------------ceEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN---------------RILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~---------------~~~wv~v 244 (830)
..++|.+.-++.+.+.+..+.-...+.++|+.|+||||+|+.+.+.-...... ++ .+.++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 34689888888888888754445678999999999999999987532111000 00 0112222
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH--hHHHhhhc----CCCceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIFR----VPGCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~----~~gs~iivTtr 318 (830)
+....+++ .+.+...+... ...+++-++|+|+++... .++.+... .+..++|++|.
T Consensus 96 ~~~~~v~~-ir~i~~~~~~~-----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 96 ASRTKVEE-MREILDNIYYS-----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred cccCCHHH-HHHHHHHHhcC-----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 11122222 12222221100 012455689999998543 45555532 23556676664
Q ss_pred ccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 319 FKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 319 ~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+.. +. .....+++.+++.++..+.+...+-..+. ...++.+..|++.++|.|-.+.
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 432 21 22467899999999998888775533221 1234577889999999886543
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.4e-05 Score=86.14 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=106.0
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc------------------------cccCCc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT------------------------SYFNNR 238 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~------------------------~~F~~~ 238 (830)
..+||.+.-+..|.+++..+.-...+-++|..|+||||+|+.+.+.-.-. +.|.+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD- 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD- 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc-
Confidence 45689888888999888755555677899999999999999886432110 01111
Q ss_pred eEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhcC----CCce
Q 003321 239 ILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRV----PGCK 312 (830)
Q Consensus 239 ~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~----~gs~ 312 (830)
+++++......++++.. +++.+... -..++.-++|||+++.. ..++.|+... ++++
T Consensus 95 viEIdAas~~gVDdIRe-Lie~~~~~-----------------P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~ 156 (700)
T PRK12323 95 YIEMDAASNRGVDEMAQ-LLDKAVYA-----------------PTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVK 156 (700)
T ss_pred ceEecccccCCHHHHHH-HHHHHHhc-----------------hhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCce
Confidence 12333332333333222 22211100 01356678999999854 5566666532 3556
Q ss_pred EEEEeccc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 313 TLVVSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 313 iivTtr~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+|++|.+. .+. .....+++..++.++..+.+.+.+-... . ...++....|++.++|.|..+..+
T Consensus 157 FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 157 FILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-I--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred EEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555443 332 2346789999999999988876653222 1 122446788999999998755443
No 66
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=6.6e-05 Score=89.48 Aligned_cols=306 Identities=19% Similarity=0.194 Sum_probs=169.3
Q ss_pred ccccchhhHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCC---HHHHHHH
Q 003321 185 GIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPN---VEQLRAK 256 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~---~~~l~~~ 256 (830)
++||+.+.+.+...+... ..-.++.+.|.+|||||+|+++|.. .+.+. |-... +-....... ..+..++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~-f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGK-FDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhh-cccccCCCchHHHHHHHHH
Confidence 589999999998888542 4566999999999999999999984 33333 11111 111111111 1222233
Q ss_pred HHHhhcC-------------------CCC------------CCCC----C----C-ccc----chHHHHh--hcCCcEEE
Q 003321 257 VWGFVSG-------------------CDS------------MEPN----Y----V-IPH----WNLQIQS--KLGSRCLV 290 (830)
Q Consensus 257 i~~~l~~-------------------~~~------------~~~~----~----~-~~~----~~~~~~~--l~~kr~Ll 290 (830)
++.++.. ... .+.. + . ... ....+.. .+.++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3332211 000 0000 0 0 000 0011111 15679999
Q ss_pred EEeCCCCh-----HhHHHhhhcCC-----CceEEEEeccccc--c-----cccceEEccCCCHHHHHHHHHHHhcCCCCC
Q 003321 291 VLDDVWSL-----AVLEQLIFRVP-----GCKTLVVSRFKFS--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTI 353 (830)
Q Consensus 291 VlDdv~~~-----~~~~~l~~~~~-----gs~iivTtr~~~~--~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 353 (830)
|+||+... ..++.+....+ -..+..+...... . .....+.+.+|+..+...+...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999643 22333333222 1233333222221 1 334689999999999999987664221221
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHhcCC-------ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChh
Q 003321 354 PPSANENLVKQIVKKCKGLPLALKVIGASLREQ-------PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKK 426 (830)
Q Consensus 354 ~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 426 (830)
..+....|+++..|+|+-+.-+-..+... +...|..=...+.. ... .+.+.+.+..-.+.||..
T Consensus 239 ----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~-~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 239 ----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LAT-TDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chh-hHHHHHHHHHHHhcCCHH
Confidence 23478999999999999998777776543 23445433333221 111 223666788899999999
Q ss_pred HHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhHHHHhhhhccCCcccccccccchhhHHHHHH
Q 003321 427 VKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIVKDARRAGDMYSSYYEISVTQHDVLRDL 506 (830)
Q Consensus 427 ~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~~~~~~~~~~g~~~~~~~~~~~~mHdli~~~ 506 (830)
.|+.....||+-. .|+.+.|...+- .....++...+..|....++... +..+.+...... .+--.||.+++.
T Consensus 310 t~~Vl~~AA~iG~--~F~l~~La~l~~---~~~~~~a~~l~~al~e~lI~~~~-~~yr~~~~~~~~--~Y~F~H~~vqqa 381 (849)
T COG3899 310 TREVLKAAACIGN--RFDLDTLAALAE---DSPALEAAALLDALQEGLILPLS-ETYRFGSNVDIA--TYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHHHHhCc--cCCHHHHHHHHh---hchHHHHHHHHHHhHhhceeccc-cccccccccchh--hHHhhHHHHHHH
Confidence 9999999999864 455666665552 24455666666665544443321 111111111000 011468888888
Q ss_pred HHHh
Q 003321 507 ALHL 510 (830)
Q Consensus 507 ~~~~ 510 (830)
|-..
T Consensus 382 aY~~ 385 (849)
T COG3899 382 AYNL 385 (849)
T ss_pred Hhcc
Confidence 7643
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.16 E-value=7.3e-05 Score=80.70 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=101.4
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH----
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG---- 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~---- 259 (830)
.++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+.- ....+...+..+++++... .....+..
T Consensus 16 ~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~GtGKT~la~~~~~~l-~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~ 91 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS-PNLPHLLVQGPPGSGKTAAVRALAREL-YGDPWENNFTEFNVADFFD--QGKKYLVEDPRF 91 (337)
T ss_pred HhcCCHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHh-cCcccccceEEechhhhhh--cchhhhhcCcch
Confidence 457898888888888753 445568899999999999999988532 1222233333444432110 00000000
Q ss_pred --hhcCCCCCCCCCCcccchHHHHhh------cCCcEEEEEeCCCCh--HhHH---Hhhhc-CCCceEEEEecccc-c-c
Q 003321 260 --FVSGCDSMEPNYVIPHWNLQIQSK------LGSRCLVVLDDVWSL--AVLE---QLIFR-VPGCKTLVVSRFKF-S-T 323 (830)
Q Consensus 260 --~l~~~~~~~~~~~~~~~~~~~~~l------~~kr~LlVlDdv~~~--~~~~---~l~~~-~~gs~iivTtr~~~-~-~ 323 (830)
.+... ...........+...+.. .+.+-+||+||++.. .... .+... .+.+++|+||.... . .
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 92 AHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000 000000111112111111 234558999999754 2222 22222 33577877775432 1 1
Q ss_pred ---cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 324 ---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 324 ---~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
.....+++.+++.++...++...+-...- ...++....+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22356788999999998888876532221 12355788899999887655543
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5e-08 Score=95.54 Aligned_cols=168 Identities=18% Similarity=0.244 Sum_probs=100.3
Q ss_pred cccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccc-cCc--cCCCccccCCCceEEeeeccccccc
Q 003321 581 YFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQ--LPKSSIPLKKMQKISFVLCKINNSL 657 (830)
Q Consensus 581 ~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-i~~--lp~~~~~l~~L~~L~l~~~~~~~~~ 657 (830)
..+-..++.+.+|+.|.+.++....... ..+.+-.+|+.|+|+.++ ++. +.--+..++.|..|++++|......
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 3444567889999999998876543221 235566889999998763 442 2222556788888888888765422
Q ss_pred cccccCcCCCCCccceecccccccc---CccccccCCCCCCCEEEeeCcCCCCc-cchhcCCCCCCCEEEcccCCCCCcc
Q 003321 658 DQSVVDLPKTLPCLTELTFDHCDDL---MKLPPSICGLQSLKNLSVTNCHSLQE-LPADIGKMKSLQILRLYACPHLRTL 733 (830)
Q Consensus 658 ~~~~~~~~~~~~~L~~L~l~~~~~l---~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~l 733 (830)
-... +.+--++|+.|+|+||..- ..+..-...+++|..|||++|-.++. ....+.+++.|++|.++.|+.+ .
T Consensus 277 Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~ 352 (419)
T KOG2120|consen 277 VTVA--VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--I 352 (419)
T ss_pred hhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--C
Confidence 1111 1122357778888876421 12222234567777777777665543 2345556777777777777643 2
Q ss_pred ch---hhcCCCCCcEeccccccccC
Q 003321 734 PA---RICELVCLKYLNISQCVSLS 755 (830)
Q Consensus 734 p~---~~~~l~~L~~L~L~~c~~l~ 755 (830)
|. .+...|+|.+|++.+|-.-+
T Consensus 353 p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 353 PETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred hHHeeeeccCcceEEEEeccccCch
Confidence 22 24556667777766664443
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=6.8e-05 Score=84.06 Aligned_cols=174 Identities=16% Similarity=0.102 Sum_probs=105.6
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc-------------------cccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (830)
..+||.+..+..+.+++..+.-...+.++|+.|+||||+|+.+.+..... +.|.+ ++.++
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD-viEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID-LIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc-eEEec
Confidence 45689998899999988755556788999999999999999887431110 11111 11233
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTt 317 (830)
.+....++++. .++..+.. ....+++-++|+|+++.. ...+.++. .. ++.++|++|
T Consensus 94 AAs~~~VddIR-eli~~~~y-----------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 94 AASRTKVEDTR-ELLDNVPY-----------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred ccccCCHHHHH-HHHHHHhh-----------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 22222232221 12221100 001356678999999854 44555543 22 356777777
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
.+.. +. .....+++.+++.++..+.+.+.+-..+. ...++....|++.++|.+-.+..
T Consensus 156 td~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 156 TDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5532 11 33467899999999998888776533221 22345778899999998755543
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.9e-05 Score=87.22 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=105.9
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CCc---------------eEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNR---------------ILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~---------------~~wv~v 244 (830)
..+||.+.-+..|.+++....-...+.++|+.|+||||+|+.+++.-.-.... +|+ +++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 35689888888888888754444566899999999999999998532111110 011 112222
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc---CC-CceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~---~~-gs~iivTtr 318 (830)
.....++++ +.+...+.. ....+++-++|||+++.. +..+.|+.. .| ..++|++|.
T Consensus 96 as~~kVDdI-ReLie~v~~-----------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 96 ASRTKVDDT-RELLDNVQY-----------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred ccccCHHHH-HHHHHHHHh-----------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 111222222 223222210 012467789999999853 556665542 23 466666655
Q ss_pred ccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 319 FKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 319 ~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+.. +. .....|++.+++.++....+.+.+-... ....++.+..|++.++|.|-.+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 443 22 2346899999999999988877653221 1233557889999999988654443
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=7.2e-05 Score=79.57 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.++|.+..++.+..++.. +..+-+-++|++|+||||+|+.+++.- ....|...++-++.++..+...+. .+++....
T Consensus 14 ~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~~vr-~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD-GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGIDVVR-NKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHHHHH-HHHHHHHh
Confidence 357877777777777653 444557799999999999999998531 122343333333444444443332 22222211
Q ss_pred CCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--Hh---HHHhhhcC-CCceEEEEecccccc-----cccceEEcc
Q 003321 264 CDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AV---LEQLIFRV-PGCKTLVVSRFKFST-----VLNDTYEVE 332 (830)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~---~~~l~~~~-~gs~iivTtr~~~~~-----~~~~~~~l~ 332 (830)
.... . ..++.-++|||+++.. .. +..+.... +.++++++|...... .....++++
T Consensus 91 ~~~~-----~---------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 91 KKVT-----L---------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred cccc-----C---------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 1000 0 0234668999999854 22 22223333 356777766543211 223578999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 333 LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 333 ~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+++.++....+...+-..+- ...++....|++.++|-.-.+
T Consensus 157 ~l~~~~l~~~L~~i~~~egi---~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKV---PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 99999998888776633221 112456788899998865433
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.0001 Score=82.42 Aligned_cols=171 Identities=13% Similarity=0.043 Sum_probs=102.1
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEe------------------c
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV------------------S 245 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v------------------~ 245 (830)
.++|.+..++.+.+++....-...+.++|++|+||||+|+.+++.....+.+... +|.|. +
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~-cg~C~sc~~i~~~~h~dv~el~~~ 93 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKP-CGECESCLAVRRGAHPDVLEIDAA 93 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCC-CCcChhhHHHhcCCCCceEEeccc
Confidence 4588888888888888754445677999999999999999987543221222111 13322 2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc----CCCceEEEEecc
Q 003321 246 QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVSRF 319 (830)
Q Consensus 246 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTtr~ 319 (830)
....++.+ +++...+.. .-..+++-++|+|+++.. ..++.+... .+...+|++|..
T Consensus 94 ~~~~vd~i-R~l~~~~~~-----------------~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 94 SNNSVEDV-RDLREKVLL-----------------APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred ccCCHHHH-HHHHHHHhh-----------------ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 11111111 111111100 001356678999999854 445555542 234455555543
Q ss_pred -cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 320 -KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 320 -~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
..+. .....+++.+++.++..+.+.+.+-..+. ...++....|++.++|.+--+
T Consensus 156 ~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 156 PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 2221 33467999999999999999887643321 113457889999999988654
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00011 Score=81.67 Aligned_cols=173 Identities=15% Similarity=0.174 Sum_probs=101.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc-------CC---------------ceE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-------NN---------------RIL 240 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-------~~---------------~~~ 240 (830)
..++|-+.-+..+...+..+.-..-+-++|+.|+||||+|+.+++.-...... .+ .+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 34588888788877777654445678899999999999999997532111100 00 111
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc----CCCceEE
Q 003321 241 FLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTL 314 (830)
Q Consensus 241 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~----~~gs~ii 314 (830)
.++......++++.. +++..... -..+++-++|+|+++.. ..++.+... .+.+.+|
T Consensus 101 eidaas~~~vd~Ir~-iie~a~~~-----------------P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 101 EIDAASKTSVDDIRR-IIESAEYK-----------------PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred EeeccCCCCHHHHHH-HHHHHHhc-----------------cccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 222222223333222 22211000 01356778999999863 456666542 2345555
Q ss_pred EEe-cccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 315 VVS-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 315 vTt-r~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
++| +...+. .....+++.+++.++....+.+.+-..+. ...++....|++.++|.+--+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 444 433332 23357899999999999999887743321 122456788999999977544
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00012 Score=77.83 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=104.2
Q ss_pred ccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc----ccccccCCceEEEE-ecCCCCHHHHHHHHHH
Q 003321 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH----QVTSYFNNRILFLT-VSQSPNVEQLRAKVWG 259 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~----~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~~ 259 (830)
++|.+..++.+.+.+..+.-...+-++|+.|+||||+|+.++..- ....|.+.. .|.. -+....++++. ++.+
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~-~~~~~~~~~i~v~~ir-~~~~ 83 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII-EFKPINKKSIGVDDIR-NIIE 83 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE-EeccccCCCCCHHHHH-HHHH
Confidence 478777788888888755556688999999999999999987521 122344422 2333 23334455533 3333
Q ss_pred hhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCC--ChHhHHHhhhc----CCCceEEEEecccccc-----cccce
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVW--SLAVLEQLIFR----VPGCKTLVVSRFKFST-----VLNDT 328 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~--~~~~~~~l~~~----~~gs~iivTtr~~~~~-----~~~~~ 328 (830)
.+.... ..+++-++|+|+++ +.+.++.++.. -+++.+|++|.+.... .....
T Consensus 84 ~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 84 EVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 332111 12344455666654 55667776653 3478888888654321 23468
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+++.+++.++......... .. ..++.+..++..++|.|.-+...
T Consensus 147 ~~~~~~~~~~~~~~l~~~~-~~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKY-ND------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeCCCcCHHHHHHHHHHHh-cC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999988776543 11 11335778899999988765433
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.08 E-value=0.0001 Score=74.27 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
....+.|+|.+|+|||.|++.+++. ..+.. ..+.++++.+ ....+.. .++.+
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~-~~~~y~~~~~------~~~~~~~-------------------~~~~l 91 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAA--AEQAG-RSSAYLPLQA------AAGRLRD-------------------ALEAL 91 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcC-CcEEEEeHHH------hhhhHHH-------------------HHHHH
Confidence 3456999999999999999999853 33322 2445665432 1111111 11111
Q ss_pred cCCcEEEEEeCCCCh---HhHHH----hhh--cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVLEQ----LIF--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~~~----l~~--~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
.+.-+|||||+... ..|.. +.. ...|..+|+||+..... .....+++++++.++-.++
T Consensus 92 -~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 92 -EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred -hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 23358999999743 22221 111 12467799999865321 1235789999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+.+++....- ...++...-|++.++|-.-++
T Consensus 171 L~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 171 LRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 9987754321 122457788888888765544
No 76
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00022 Score=76.37 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=119.3
Q ss_pred cccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCc-eEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNR-ILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~-~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.+.+|+.+.+++...|.. +....-+.|+|.+|.|||+.++.|+. ++....... +++++.-...+..+++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 378999999999988853 23344499999999999999999994 455444333 568999999999999999999
Q ss_pred hhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH-----hHHHhhh-c-CCCceEEEEeccccc--c-----
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-----VLEQLIF-R-VPGCKTLVVSRFKFS--T----- 323 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~-----~~~~l~~-~-~~gs~iivTtr~~~~--~----- 323 (830)
++... +.......+......+.+ .++.++||||+++... .+-.|.. . ...++|++..-.... .
T Consensus 96 ~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 96 KLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 88622 112222333444445554 5789999999998532 2222222 1 124544433222111 1
Q ss_pred -----cccceEEccCCCHHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 324 -----VLNDTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 324 -----~~~~~~~l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
.....+..++=+.+|-......++ |.+....+...+-++...+...|-.=.||.++-.
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 122336677778888888877654 4445444444443333344444344455554443
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=0.00011 Score=74.37 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
...+.+.|+|++|+|||+|++.+++. .... ...+.++.+..... ....+ .+.
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~-~~~v~y~~~~~~~~---~~~~~----------------------~~~ 94 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAE--LSQR-GRAVGYVPLDKRAW---FVPEV----------------------LEG 94 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEEHHHHhh---hhHHH----------------------HHH
Confidence 44568999999999999999999863 2222 23455666643110 00011 111
Q ss_pred hcCCcEEEEEeCCCCh---HhHHHhh-----hcC-CC-ceEEEEecccccc------------cccceEEccCCCHHHHH
Q 003321 283 KLGSRCLVVLDDVWSL---AVLEQLI-----FRV-PG-CKTLVVSRFKFST------------VLNDTYEVELLREDESL 340 (830)
Q Consensus 283 l~~kr~LlVlDdv~~~---~~~~~l~-----~~~-~g-s~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~ 340 (830)
+. +--+|++||+... ..|+... ... .| .++|+||+..... ....++++++++.++-.
T Consensus 95 ~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 95 ME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred hh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 11 1237899999753 3333221 211 24 4789998865321 23468999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 341 SLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 341 ~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+++.+++.... . ...++...-|++++.|..-++..+
T Consensus 174 ~~l~~~a~~~~-~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 174 QALQLRARLRG-F--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHcC-C--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 99887664321 1 223567888888888766555433
No 78
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.08 E-value=4.8e-05 Score=76.85 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=94.4
Q ss_pred chhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCC
Q 003321 189 ALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSME 268 (830)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~ 268 (830)
....+.+.+++. ....+.|.|+|++|+|||+||+.+++.. ..... .+.+++++.-.+. ...++
T Consensus 23 ~~~~~~l~~~~~-~~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~-~~~~i~~~~~~~~---~~~~~---------- 85 (226)
T TIGR03420 23 AELLAALRQLAA-GKGDRFLYLWGESGSGKSHLLQAACAAA--EERGK-SAIYLPLAELAQA---DPEVL---------- 85 (226)
T ss_pred HHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCC-cEEEEeHHHHHHh---HHHHH----------
Confidence 334566666653 3556789999999999999999998642 22222 2345554422110 01111
Q ss_pred CCCCcccchHHHHhhcCCcEEEEEeCCCChH---hH-HHhhh---c--CCCceEEEEecccccc----------c--ccc
Q 003321 269 PNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA---VL-EQLIF---R--VPGCKTLVVSRFKFST----------V--LND 327 (830)
Q Consensus 269 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~---~~-~~l~~---~--~~gs~iivTtr~~~~~----------~--~~~ 327 (830)
..+. +.-+|||||++... .| +.+.. . ..+.++|+||+..... . ...
T Consensus 86 ------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 86 ------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred ------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 1111 22389999998542 22 22221 1 2345888888754311 1 135
Q ss_pred eEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 328 TYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 328 ~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
.+++++++.++...++...+-... . ...++....+++.+.|.|..+.-+-.
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~-~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG-L--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 789999999999999877542211 1 12345678888889998887765543
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=4.1e-06 Score=87.81 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC--CHHHHHHHHHHhhcCCCCCCCCC
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP--NVEQLRAKVWGFVSGCDSMEPNY 271 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~--~~~~l~~~i~~~l~~~~~~~~~~ 271 (830)
++++++..=..-.-.+|+|++|+||||||+.+|++.... +|+..+ |+.+.+.+ .+.++++.+...+-...... .
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~-~VvLIgER~~EVtdiqrsIlg~vv~st~d~--~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHL-IVLLIDERPEEVTDMQRSVKGEVVASTFDE--P 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEE-EEEEeCCchhHHHHHHHHhcCcEEEECCCC--C
Confidence 345555433445678899999999999999999865444 898765 99888877 77788888764322111100 0
Q ss_pred Ccccch------HHHHh--hcCCcEEEEEeCCCCh
Q 003321 272 VIPHWN------LQIQS--KLGSRCLVVLDDVWSL 298 (830)
Q Consensus 272 ~~~~~~------~~~~~--l~~kr~LlVlDdv~~~ 298 (830)
...+.+ ...+. ..|++++|++|++...
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111111 11111 2689999999999754
No 80
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.06 E-value=8.3e-05 Score=75.39 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=95.1
Q ss_pred HhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchH
Q 003321 199 VIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNL 278 (830)
Q Consensus 199 L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~ 278 (830)
+.+.+...-+.+||++|+||||||+.+.+..+-.. .++|..|-...-..=.+.|+++..
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq---------------- 214 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQ---------------- 214 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHH----------------
Confidence 34457788889999999999999999996433332 346776654332222344444321
Q ss_pred HHHhhcCCcEEEEEeCCCC--hHhHHHhhhcC-CCceEEE--Eecccccc------cccceEEccCCCHHHHHHHHHHHh
Q 003321 279 QIQSKLGSRCLVVLDDVWS--LAVLEQLIFRV-PGCKTLV--VSRFKFST------VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 279 ~~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~-~gs~iiv--Ttr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
....+.++|..|++|.|.. ..+-+.|++.. .|.-++| ||.+.... ....++-++.|+.++-..++.+..
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 215 NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 1122467899999999974 44556666643 3666665 45444332 334678899999999998887632
Q ss_pred --cCCC-C---CCCc----hhHHHHHHHHHHcCCchH
Q 003321 348 --FGQK-T---IPPS----ANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 348 --f~~~-~---~~~~----~~~~~~~~i~~~c~GlPL 374 (830)
.++. . .-+. ....+.+-++..|.|-.-
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 2221 1 1111 224456667777777543
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.04 E-value=0.00057 Score=73.10 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=100.4
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.++|++..++.+..++.. ...+.+.++|.+|+||||+|+.+++.- ....+....+-++.+.......+...+ ..+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~-~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~~ 94 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE-KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRENFLELNASDERGIDVIRNKI-KEFAR 94 (319)
T ss_pred HhcCcHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCccccceEEeccccccchHHHHHHH-HHHHh
Confidence 357999888888888864 445567999999999999999998532 122222211122222222222222222 22211
Q ss_pred CCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhh---hc-CCCceEEEEecccc-c-c---cccceEEcc
Q 003321 264 CDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---FR-VPGCKTLVVSRFKF-S-T---VLNDTYEVE 332 (830)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~---~~-~~gs~iivTtr~~~-~-~---~~~~~~~l~ 332 (830)
..+. ....+-+|++|+++.. +....+. .. .+.+++|+++.... . . .....++++
T Consensus 95 ~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 95 TAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred cCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 1100 0123568999998743 2233333 22 34567777664332 1 1 233468899
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 333 LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 333 ~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+++.++....+...+-.... ...++....+++.++|.+--+.
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999998888876643221 1234578889999999876643
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.01 E-value=6.9e-05 Score=87.06 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=93.2
Q ss_pred cccccchhhH---HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 184 MGIGMALGKN---KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 184 ~~vgr~~~~~---~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
.++|.+..+. .+.+++. .+....+.++|++|+||||||+.+++. ...+|. .++... ....++ +.++..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~----~lna~~-~~i~di-r~~i~~ 99 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-ADRVGSLILYGPPGVGKTTLARIIANH--TRAHFS----SLNAVL-AGVKDL-RAEVDR 99 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHH--hcCcce----eehhhh-hhhHHH-HHHHHH
Confidence 3567766553 3445554 456667789999999999999999953 333331 122111 111111 111111
Q ss_pred hcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhhcCC-CceEEEEe--cccccc------cccceE
Q 003321 261 VSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIFRVP-GCKTLVVS--RFKFST------VLNDTY 329 (830)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~~-gs~iivTt--r~~~~~------~~~~~~ 329 (830)
. .... ...+++.+|||||++. ..+.+.+..... |+.+++++ .+.... .....+
T Consensus 100 a---------------~~~l-~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~ 163 (725)
T PRK13341 100 A---------------KERL-ERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLF 163 (725)
T ss_pred H---------------HHHh-hhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccce
Confidence 1 0000 0124677999999974 455666665443 44444433 332111 224579
Q ss_pred EccCCCHHHHHHHHHHHhcCC----CCCCCchhHHHHHHHHHHcCCchH
Q 003321 330 EVELLREDESLSLFCYSAFGQ----KTIPPSANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~af~~----~~~~~~~~~~~~~~i~~~c~GlPL 374 (830)
.+++|+.++...++.+.+-.. ........++....|++.+.|..-
T Consensus 164 ~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 164 RLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 999999999999988765310 011112235577888888888644
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.0002 Score=78.11 Aligned_cols=186 Identities=12% Similarity=-0.010 Sum_probs=99.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..+||.+..+..+..++....-...+.++|+.|+||||+|+.+++.-.-........+..| .+-..+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C----~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC----TSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC----cHHHHHHccCCccce
Confidence 3468888888888888865443456899999999999999999853111100000000000 000111100000000
Q ss_pred CCCCCCCCCCcccchHHHHh-----hcCCcEEEEEeCCCC--hHhHHHhhhc---CC-CceEEEEecc-cccc----ccc
Q 003321 263 GCDSMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWS--LAVLEQLIFR---VP-GCKTLVVSRF-KFST----VLN 326 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-----l~~kr~LlVlDdv~~--~~~~~~l~~~---~~-gs~iivTtr~-~~~~----~~~ 326 (830)
.-. .......+..+...+. ..++.-++|+|+++. .+.++.++.. .| ...+|.+|.. ..+. ...
T Consensus 94 EId-aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EID-AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eec-hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 000 0000011111111111 245667899999984 4566766643 23 3444444443 3332 234
Q ss_pred ceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
..|.+.+++.++..+.+.+.+-..+ -...++....|++.++|.+--+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCChHHHH
Confidence 5799999999998888877653322 1223567889999999988544
No 84
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.98 E-value=8.2e-06 Score=79.57 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=33.1
Q ss_pred ccccchhhHHHHHHH--hcCCCceEEEEEcCCCChHHHHHHHHhcccccccc
Q 003321 185 GIGMALGKNKVKEMV--IGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY 234 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L--~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~ 234 (830)
++||+.+.+++...+ ......+++.|+|.+|+|||+|.++++. ....+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 689999999999999 3346679999999999999999999984 44444
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00023 Score=79.78 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=102.1
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc-------------------cccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (830)
..++|.+..+..+...+....-...+-++|+.|+||||+|+.+++.-.-. ..|.. +++++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d-lieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID-LIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 34688888888888888654445668899999999999999987421100 01222 22333
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTt 317 (830)
......++++ +.++..+.. .-..+++-++|+|+++.. ..++.++. ..| .+.+|++|
T Consensus 95 aas~~gvd~i-r~ii~~~~~-----------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 95 AASRTGVEET-KEILDNIQY-----------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cccccCHHHH-HHHHHHHHh-----------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3222333322 222222210 001356779999999843 44555543 333 45555555
Q ss_pred ccc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHH
Q 003321 318 RFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVI 379 (830)
Q Consensus 318 r~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 379 (830)
.+. .+. .....+++.+++.++-...+.+.+-..+ . ...++....|++.++|.+- |+..+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433 222 2346889999999998877766442221 1 2234567889999999664 44444
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00018 Score=81.46 Aligned_cols=174 Identities=10% Similarity=0.088 Sum_probs=102.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-------------------ccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~ 243 (830)
..+||.+.-+..|.+++....-...+.++|+.|+||||+|+.+.+.-.... .|.+ ++.++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D-vlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD-LLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-eEEEe
Confidence 356899988999999887544456789999999999999998874211110 0111 11222
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH--hHHHhhh----cCCCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIF----RVPGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~----~~~gs~iivTt 317 (830)
......++.+ +.++..... .-..+++-++|||+++... ..+.|+. ..+.+++|++|
T Consensus 95 aAs~~gVd~I-Relle~a~~-----------------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 95 AASNTGIDNI-REVLENAQY-----------------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred ccccCCHHHH-HHHHHHHHh-----------------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 2222222222 122221100 0013566789999998542 3333333 22356777776
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
.+.. +. .....+++..++.++....+.+.+-..+. ...++....|++.++|.+.-+..
T Consensus 157 td~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 157 TDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 5443 21 22345778899999998888776533221 22345788999999998855443
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.96 E-value=0.00025 Score=69.18 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-------------------ccCCceEEEEec-CCCCHHHH
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS-QSPNVEQL 253 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~-~~~~~~~l 253 (830)
.+.+.+....-...+.++|+.|+||||+|+.+...-.-.. .+++-. ++... .....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH
Confidence 4455555433446899999999999999998864211110 111111 22211 11222222
Q ss_pred HHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceEEEEecccc-cc---
Q 003321 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVSRFKF-ST--- 323 (830)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTtr~~~-~~--- 323 (830)
+++...+.... ..+.+-++|+|+++.. +..+.+.. . .+.+.+|++|+... +.
T Consensus 82 -~~i~~~~~~~~-----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 -RELVEFLSRTP-----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -HHHHHHHccCc-----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 22222221110 1345668999999753 33444443 2 23566666665432 11
Q ss_pred -cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHH
Q 003321 324 -VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLa 375 (830)
.....+++.+++.++..+.+... + . .++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~--g---i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ--G---I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc--C---C----CHHHHHHHHHHcCCCccc
Confidence 23468999999999998888776 1 1 235788999999998863
No 88
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=9.9e-05 Score=73.78 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
.+.+.|+|++|+|||+|++.+++.. ++.+++.. .+...++..+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~------~~~~~~~~~~----------------------~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPN------EIGSDAANAA----------------------A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHH------HcchHHHHhh----------------------h
Confidence 4678999999999999999988532 12244332 1111111111 1
Q ss_pred CCcEEEEEeCCCCh----HhHHHhhh--cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHHHHHH
Q 003321 285 GSRCLVVLDDVWSL----AVLEQLIF--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 285 ~kr~LlVlDdv~~~----~~~~~l~~--~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
+ -+|++||+... +.+-.+.. .-.|..+|+|++..... ....++++++++.++-.+++.+.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 1 27888999632 22222222 12377899998854321 33468999999999999999887
Q ss_pred hcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 347 AFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 347 af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
+-...- ...+++..-|++++.|..-++..
T Consensus 166 ~~~~~~---~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL---YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC---CCCHHHHHHHHHHhhhhHHHHHH
Confidence 733211 22356788888888887776654
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=0.00037 Score=69.38 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccc-cCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...+.|+|..|+|||.|.+++++. +.+. -..++.+++. .++...+...+.... . ......+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~-------~---~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIREFADALRDGE-------I---EEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHHHHHHHHTTS-------H---HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHHHHHHHHccc-------c---hhhhhhh
Confidence 456899999999999999999963 3332 2445666543 455555555543311 1 1222222
Q ss_pred cCCcEEEEEeCCCCh---HhHHHhh----hc--CCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVLEQLI----FR--VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~~~l~----~~--~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
. .-=+|++||++.. ..|.... .. ..|.++|+|++..... ...-++++++++.++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 2 4457889999853 2232221 11 2477999999765432 2345799999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+.+.|-...-. ..++++.-|++++.+..-.+.
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHH
Confidence 98887432221 234577777777766554443
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00028 Score=80.37 Aligned_cols=175 Identities=12% Similarity=0.065 Sum_probs=103.1
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-------------------ccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~ 243 (830)
..+||.+.-+..+.+.+..+.-...+-++|+.|+||||+|+.+.+.-.-.. .|.+. +.++
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~-ieid 94 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL-IEID 94 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc-eeec
Confidence 356898888888888886544345678999999999999999874311110 11111 1222
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh---cC-CCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RV-PGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~---~~-~gs~iivTt 317 (830)
......++++ +.+...+.. .-..+++-++|||+++. ....+.|+. .- +..++|++|
T Consensus 95 aas~~~Vddi-R~li~~~~~-----------------~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 95 AASRTKVEDT-RELLDNVQY-----------------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred ccccCCHHHH-HHHHHHHHh-----------------hhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec
Confidence 2211222222 222222110 01246677899999984 345565554 22 345566555
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
.+.. +. .....|++.+++.++....+.+.+-... . ...++....|++.++|.+-.+..+
T Consensus 157 t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i--~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 157 TDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-I--PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5433 22 2246799999999999988876552221 1 223456788999999988755444
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00023 Score=79.01 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=101.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccc--c-C---------------CceEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY--F-N---------------NRILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~--F-~---------------~~~~wv~v 244 (830)
..++|.+..+..+...+....-...+-++|++|+||||+|+.+++.-..... + + ..+..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 3468887777777777764443467899999999999999999753211100 0 0 01223333
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCCC-ceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVPG-CKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~g-s~iivTtr 318 (830)
+...+..++. .+...+... ...+++-++|+|+++.. +..+.+.. ..++ ..+|++|.
T Consensus 94 a~~~gid~iR-~i~~~~~~~-----------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 94 ASNRGIDEIR-KIRDAVGYR-----------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred cccCCHHHHH-HHHHHHhhC-----------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 3233333332 232221100 01356679999999854 33444443 2334 33344443
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCC-chHHHHHHHHH
Q 003321 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGAS 382 (830)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~ 382 (830)
+ ..+. .....+++.+++.++....+...+...+- ...++....|++.++| ++.|+..+-..
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 2221 33467889999999988888776633221 1224577888888865 46666666553
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00028 Score=77.85 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=104.4
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc------c------------cccccCCceEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH------Q------------VTSYFNNRILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~------~------------~~~~F~~~~~wv~v 244 (830)
..+||.+.-+..+.+.+..+.-...+-++|+.|+||||+|+.+...- . +.......++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 35688888788887777644444588999999999999999886310 0 01111112335555
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh----cCCCceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtr 318 (830)
+...+++++. .+++...... ..+++-++|+|+++.. +..+.+.. .-+.+++|++|.
T Consensus 93 as~~~vddIR-~Iie~~~~~P-----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYLP-----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhcc-----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 5445555543 2333321100 1245668999999743 34555543 234566666654
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
. ..+. .....+++.+++.++....+.+.+-..+. ...++....|++.++|.+-.+
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 3 2222 33467889999999998888876643321 123456788999998877543
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00016 Score=71.39 Aligned_cols=168 Identities=19% Similarity=0.217 Sum_probs=100.0
Q ss_pred ccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKV 257 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i 257 (830)
..+||.+.-++++.=++.. .+.+--+-++|++|.||||||.-+++...+ .+. ++-+.. ..+.++ ..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k-----~tsGp~leK~gDl-aai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK-----ITSGPALEKPGDL-AAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE-----ecccccccChhhH-HHH
Confidence 3578988877777666642 255778999999999999999999964332 221 111100 011111 111
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH---------hHHH-----hhhcCCCceEE---------
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA---------VLEQ-----LIFRVPGCKTL--------- 314 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~---------~~~~-----l~~~~~gs~ii--------- 314 (830)
+.. + ...=.+.+|.+.... ..++ +.+.+|++|.+
T Consensus 98 Lt~----------------------L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 98 LTN----------------------L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred Hhc----------------------C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 111 1 122345667776421 1122 22345555544
Q ss_pred --EEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhc
Q 003321 315 --VVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR 384 (830)
Q Consensus 315 --vTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 384 (830)
.|||.-... ...-+.+++--+.+|-.++..+.|-.- .-.-.++-+.+|+++..|-|--+.-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---GIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---CCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 578876654 344577888889999999988877221 1122356789999999999976655555443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00039 Score=75.24 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=98.1
Q ss_pred cccccchhhHHHHHHHhcCC---------CceEEEEEcCCCChHHHHHHHHhcccccc------------------cccC
Q 003321 184 MGIGMALGKNKVKEMVIGRD---------DLSVLGICGIGGSGKTTLALEVCRDHQVT------------------SYFN 236 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~---------~~~vi~I~G~~GiGKTtLA~~v~~~~~~~------------------~~F~ 236 (830)
.++|-+..++.+.+++.... -..-+-++|++|+||||+|+.+.+.-.-. ..++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 35788888888888886532 34568899999999999999886421100 0111
Q ss_pred CceEEEEec-CCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh----cCC
Q 003321 237 NRILFLTVS-QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVP 309 (830)
Q Consensus 237 ~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~----~~~ 309 (830)
+ +.++... ....++++ +.+.+.+.... ..+++-++|+|+++.. ...+.+.. ..+
T Consensus 86 D-~~~i~~~~~~i~i~~i-R~l~~~~~~~p-----------------~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 86 D-VRVVAPEGLSIGVDEV-RELVTIAARRP-----------------STGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred C-EEEeccccccCCHHHH-HHHHHHHHhCc-----------------ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1 1122111 11223332 12222221110 1345567888999843 33343432 234
Q ss_pred CceEEEEecccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 310 GCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 310 gs~iivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+..+|++|.+.. +. .....+.+++++.++..+.+.... + . .++.+..++..++|.|....-+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 666666666542 22 234678999999999988886432 1 1 1346788999999999765444
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00031 Score=79.88 Aligned_cols=174 Identities=11% Similarity=0.113 Sum_probs=102.0
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc------------------------cccCCce
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT------------------------SYFNNRI 239 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~------------------------~~F~~~~ 239 (830)
.+||-+.-+..|.+++....-...+-++|+.|+||||+|+.+.+.-.-. +.+.+ +
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D-~ 95 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD-Y 95 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc-e
Confidence 4578877788888888755555678999999999999999985321100 01111 1
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc---CC-CceE
Q 003321 240 LFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKT 313 (830)
Q Consensus 240 ~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~---~~-gs~i 313 (830)
++++......++++. .+++.+... -..++.-++|||+|+.. +.++.++.. -| ..++
T Consensus 96 ~eldaas~~~Vd~iR-eli~~~~~~-----------------p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f 157 (618)
T PRK14951 96 TELDAASNRGVDEVQ-QLLEQAVYK-----------------PVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF 157 (618)
T ss_pred eecCcccccCHHHHH-HHHHHHHhC-----------------cccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE
Confidence 122222222232221 222221100 01345568899999853 456655543 23 4566
Q ss_pred EEEeccc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 314 LVVSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 314 ivTtr~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
|++|.+. .+. .....+++..++.++..+.+.+.+-..+. ...++....|++.++|.+--+..+
T Consensus 158 IL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 158 VLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred EEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6555442 222 33467899999999998888776533221 123457788999999977555433
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.91 E-value=0.00012 Score=79.46 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=96.4
Q ss_pred cccccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC
Q 003321 182 NLMGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (830)
...+.|++..++++.+.+.. . ...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~------~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF------IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE------Eecch---
Confidence 34578999999999887732 1 23556899999999999999999953 33333 22221
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh----------------HhHHHhhh---c--
Q 003321 250 VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------------AVLEQLIF---R-- 307 (830)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~----------------~~~~~l~~---~-- 307 (830)
..+....... .........+.. ...+.+|+||+++.. ..+..+.. +
T Consensus 190 -~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 -SELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -HHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111100 001111122211 346789999998743 11222321 1
Q ss_pred -CCCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 308 -VPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 308 -~~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
..+.+||.||...... ..+..++++..+.++..++|..++.+....... ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 2356777777643211 224578999999999999999887543322111 2456777777754
No 97
>PTZ00202 tuzin; Provisional
Probab=97.90 E-value=0.00019 Score=75.88 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=100.9
Q ss_pred CCcccccccchhhHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 180 LGNLMGIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.....++||+.+...+...|.+. ...+++.|.|++|+|||||++.+... .. +. +++++.. +..++++.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~--qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP--AVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce--EEEECCC---CHHHHHHHH
Confidence 34568999999999999998542 34569999999999999999999843 22 22 3334333 679999999
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhh---cCCcEEEEEeCCC--ChH----hHHHhhhcCCCceEEEEecccccc-----
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVW--SLA----VLEQLIFRVPGCKTLVVSRFKFST----- 323 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l---~~kr~LlVlDdv~--~~~----~~~~l~~~~~gs~iivTtr~~~~~----- 323 (830)
+.+++........+....++..+... ++++.+||+-==. +.. ..-.+.....-|.|++---.+...
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 99997532211122223333333222 3777777765332 111 122333344567888766555443
Q ss_pred -cccceEEccCCCHHHHHHHHHHH
Q 003321 324 -VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
..-+-|-++.++.++|.+.-.+.
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhc
Confidence 22256899999999998776543
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=97.89 E-value=0.00026 Score=71.38 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
...+.|+|.+|+|||.|++.+++. .... ..++.|++..+ +.... ....+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~-~~~v~y~~~~~------~~~~~-------------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQR-GEPAVYLPLAE------LLDRG-------------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhC-CCcEEEeeHHH------HHhhh-------------------HHHHHhhh
Confidence 367899999999999999999853 2222 23455766542 11110 01111122
Q ss_pred CCcEEEEEeCCCCh---HhHHH-hh---h--cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHHH
Q 003321 285 GSRCLVVLDDVWSL---AVLEQ-LI---F--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (830)
Q Consensus 285 ~kr~LlVlDdv~~~---~~~~~-l~---~--~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (830)
+- =+||+||+... ..|+. +. . ...|..+|+|++..... ....++++++++.++-..+.
T Consensus 97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 21 26889999732 23432 22 2 12477899988865432 12357899999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 344 ~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
..++.... . ...+++..-|++++.|..-.+..+
T Consensus 176 ~~ka~~~~-~--~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRG-L--HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcC-C--CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 86664322 1 122467888888888776555443
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00048 Score=73.47 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=104.3
Q ss_pred cccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc--ccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS--YFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~--~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
...++|.+.....+...+....-...+.|+|+.|+||||+|..+...---.. .+.... ....+......+.+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~----~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET----LADPDPASPVWRQIAQ 97 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc----cCCCCCCCHHHHHHHc
Confidence 3456999988888888887555556799999999999999998874211100 011000 0001111112222221
Q ss_pred h-------hcCCCCCC-----CCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEE
Q 003321 260 F-------VSGCDSME-----PNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVV 316 (830)
Q Consensus 260 ~-------l~~~~~~~-----~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivT 316 (830)
. +....... ..-..+......+.+ .+++-++|+|+++.. ...+.++. .. ++..+|++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 00000000 000112222222222 466779999999853 33444443 22 24444444
Q ss_pred eccc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 317 SRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 317 tr~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
|... .+. .....+++.+++.++..+++...+.... ..++.+..+++.++|.|..+..+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4333 222 2336899999999999999987432111 224567889999999998765443
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0004 Score=77.95 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=102.0
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc-------------------cccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (830)
..+||-+.-+..+.+++....-...+-++|+.|+||||+|+.+...-.-. +.|.+ ++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d-~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD-LFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-EEEEc
Confidence 35689888889999998754445578899999999999999887421111 11222 22344
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTt 317 (830)
.+....++++. .++..+.-. -..++.-++|+|+|+.. +..+.++. .. +.+++|++|
T Consensus 95 aas~~~v~~iR-~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 95 AASRTKVEDTR-ELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCHHHHH-HHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 33334444432 333332110 01356668899999853 44554443 22 356666665
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
.+.. +. .....+++.+++.++-...+.+.+-..+ . ...++....|++.++|.+.-+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i--~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-V--EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCcHHHHH
Confidence 4432 21 2235688888998887766655442221 1 1223466788888888775443
No 101
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00055 Score=76.84 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=100.6
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CC---------------ceEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN---------------RILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~---------------~~~wv~v 244 (830)
..++|.+..++.+.+.+..+.-...+-++|+.|+||||+|+.+.+.-.-.... .| .+.+++.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIda 95 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDA 95 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecc
Confidence 35689998888988888654445678899999999999999987431100000 00 0112222
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh---cCC-CceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivTtr 318 (830)
+....+.++ +.+...+... -..+++-++|+|+++. ...++.|.. ..| ...+|++|.
T Consensus 96 as~igVd~I-ReIi~~~~~~-----------------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 96 ASNNGVDEI-RNIIDNINYL-----------------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred ccccCHHHH-HHHHHHHHhc-----------------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 222222222 1122211100 0123344699999975 344555554 233 455554553
Q ss_pred cc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHHHH
Q 003321 319 FK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGA 381 (830)
Q Consensus 319 ~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 381 (830)
.. .+. .....+++.+++.++....+...+-..+. ...++.+..+++.++|.+- |+..+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32 221 23467899999999998888776532221 1224567889999999664 4444443
No 102
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00095 Score=71.64 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=101.6
Q ss_pred cccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCc-----eEEEEecCCCCHHHHHHH
Q 003321 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNR-----ILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~-----~~wv~v~~~~~~~~l~~~ 256 (830)
...++|.+..+..+.+.+....-...+-++|+.|+||+|+|..+.+.---....... .--..+...+. .-+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~---~c~~ 94 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP---VARR 94 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh---HHHH
Confidence 345789888888888888754445678999999999999998775321100000000 00000000000 0111
Q ss_pred HHHhh-------cCC--CCC---CCCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceE
Q 003321 257 VWGFV-------SGC--DSM---EPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKT 313 (830)
Q Consensus 257 i~~~l-------~~~--~~~---~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~i 313 (830)
+...- ... ... ...-.+++.+...+.+ .+++.++|+|+++.. ...+.+.. .- +++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11000 000 000 0000112222222222 356778999999843 34444443 33 35667
Q ss_pred EEEecccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 314 LVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 314 ivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
|++|.... +. .....+.+.+++.++..+++...... . .+.....++..++|.|+.+..+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~-~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------L-PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 77766553 21 33467899999999999999875311 1 1122367899999999866554
No 103
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.83 E-value=1.2e-06 Score=90.30 Aligned_cols=153 Identities=18% Similarity=0.294 Sum_probs=102.1
Q ss_pred CCCCccceeccccccccCccc--cccCCCCCCCEEEeeCcCCCCccc-hhc-CCCCCCCEEEcccCCCCCc--cchhhcC
Q 003321 666 KTLPCLTELTFDHCDDLMKLP--PSICGLQSLKNLSVTNCHSLQELP-ADI-GKMKSLQILRLYACPHLRT--LPARICE 739 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp-~~i-~~l~~L~~L~l~~~~~l~~--lp~~~~~ 739 (830)
..+..|+.|..++|.++...+ .-..+.++|+.|-+++|...+..- ..+ .+.++|+.|++.+|..... +..--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 346677778888877655433 122356788888888887655432 111 3567888888887765432 2222346
Q ss_pred CCCCcEeccccccccCcc-----hhhhccCCCCcEEeccCccCCcc-CCccccccccCcee---ecCchhhhhHHHHhhh
Q 003321 740 LVCLKYLNISQCVSLSCL-----PQGIGNLIRLEKIDMRECSQIWS-LPKSVNSLKSLRQV---ICEEDVSWAWKDLEKT 810 (830)
Q Consensus 740 l~~L~~L~L~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~l---~~~~~~~~~~~~l~~~ 810 (830)
++.|+.|.|++|..++.. ...-..+..|+.+.+++|+.+.+ .-+.+..+++|+.+ +|.+-+......+..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 789999999999877653 23334567899999999996653 33455566677765 4556566667778889
Q ss_pred CCCceeee
Q 003321 811 LPNLHVQV 818 (830)
Q Consensus 811 lp~L~~~~ 818 (830)
+|++++.-
T Consensus 451 lp~i~v~a 458 (483)
T KOG4341|consen 451 LPNIKVHA 458 (483)
T ss_pred Cccceehh
Confidence 99999863
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00099 Score=72.62 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=100.5
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccc------ccccCCceEEEEecCCCCHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV------TSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~------~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.++|.+..++.+.+.+....-.+.+-++|++|+||||+|+.+.+.-.- ...|...++-++.....+..++. .+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-NL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-HH
Confidence 458988888888888875445568999999999999999998753111 11233223222222222233322 22
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEeccc-ccc----ccc
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSRFK-FST----VLN 326 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtr~~-~~~----~~~ 326 (830)
++.+.... ..+++-++|+|+++.. ..++.+.. ..+ .+.+|++|... ... ...
T Consensus 97 ~~~~~~~p-----------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 97 IDQVRIPP-----------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred HHHHhhcc-----------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 22221100 1245568999998743 34555533 223 44555555332 221 234
Q ss_pred ceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
..++.++++.++....+...+-..+- ...++.+..+++.++|.+-.+
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 57899999999988888776643221 122457888888999866533
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=4.1e-05 Score=80.89 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCCCCC-cc---cc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNYV-IP---HW 276 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~-~~---~~ 276 (830)
..-..++|+|++|.|||||++.+++... .++|+..+ |+.+.+. .++.++++.+...+-......+... .. ..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v-~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVEL-IVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEE-EEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 4556899999999999999999997533 33788766 8888865 7899999988655433221111100 00 01
Q ss_pred hHHHHh--hcCCcEEEEEeCCCCh
Q 003321 277 NLQIQS--KLGSRCLVVLDDVWSL 298 (830)
Q Consensus 277 ~~~~~~--l~~kr~LlVlDdv~~~ 298 (830)
....+. ..|++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 111111 2689999999999754
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00066 Score=76.77 Aligned_cols=172 Identities=11% Similarity=0.096 Sum_probs=100.1
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc-------------------cccCCceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (830)
..++|.+.-+..+.+++....-...+-++|+.|+||||+|+.+...-... ..|.+ ++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d-~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD-LIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc-eeEee
Confidence 34688888888888888754445567899999999999999886421110 11221 12333
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTt 317 (830)
.+....++++ +.++..+... -..+++-++|+|+++.. +..+.++. .. +.+.+|++|
T Consensus 95 ~~~~~~vd~i-r~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 95 AASNTQVDAM-RELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccccCCHHHH-HHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3222233332 2333322110 01356678999999854 33444443 22 355666655
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
.+.. +. .....+++..++.++..+.+.+.+-..+ . ...++....|++.++|.+--+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i--~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I--PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHH
Confidence 4432 22 2235788999999988887766542222 1 123456788999999977543
No 107
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00036 Score=74.50 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=80.9
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|.+..++.+..++....-..++.++|++|+||||+|+.+++. ... .+..++.+. .....+...+....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~--~~~----~~~~i~~~~-~~~~~i~~~l~~~~- 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE--VGA----EVLFVNGSD-CRIDFVRNRLTRFA- 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH--hCc----cceEeccCc-ccHHHHHHHHHHHH-
Confidence 3458999999999999875555678888999999999999999853 221 223455544 22222222221111
Q ss_pred CCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh---Hh---HHHhhhc-CCCceEEEEecccccc-----cccceEE
Q 003321 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL---AV---LEQLIFR-VPGCKTLVVSRFKFST-----VLNDTYE 330 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~---~~---~~~l~~~-~~gs~iivTtr~~~~~-----~~~~~~~ 330 (830)
... ...+.+-+||+||++.. +. +..+... .+++++|+||...... .....+.
T Consensus 93 ~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 93 STV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred Hhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 000 01134557899999854 22 2222233 3467888888644311 2224566
Q ss_pred ccCCCHHHHHHHHH
Q 003321 331 VELLREDESLSLFC 344 (830)
Q Consensus 331 l~~L~~~e~~~Lf~ 344 (830)
++..+.++..+++.
T Consensus 157 ~~~p~~~~~~~il~ 170 (316)
T PHA02544 157 FGVPTKEEQIEMMK 170 (316)
T ss_pred eCCCCHHHHHHHHH
Confidence 66777777766654
No 108
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.76 E-value=4.9e-06 Score=84.02 Aligned_cols=190 Identities=16% Similarity=0.160 Sum_probs=128.1
Q ss_pred CCCceEEEEeeCccCccccc---ChhhhhcccCceEEEccccCCccccCC----------CCCCCCccccCeeeeccccc
Q 003321 564 EFPKAEVLILNFSSTEEYFL---PPFIENMEKLRALIVINYSTSNAALGN----------FSVCSNLTNLRSLWLEKVSI 630 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~l---p~~i~~l~~Lr~L~l~~~~~~~~~~~~----------~~~l~~l~~L~~L~L~~~~i 630 (830)
.+|+++.+.|+-+......+ ...+.++..|++|.+.||+........ ..-..+-++||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 34566666554443323333 345778999999999998765432211 12345678999999999987
Q ss_pred CccC-----CCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCc----cccccCCCCCCCEEEee
Q 003321 631 SQLP-----KSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMK----LPPSICGLQSLKNLSVT 701 (830)
Q Consensus 631 ~~lp-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----lp~~i~~l~~L~~L~L~ 701 (830)
..-+ ..+...+.|+.+.+..|.+...-......-...+++|+.|+|..|....+ +...++.+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 6433 34566788999999988765433222223345689999999999875432 44556778899999999
Q ss_pred CcCCCCc----cchhc-CCCCCCCEEEcccCCCCCc----cchhhcCCCCCcEeccccccc
Q 003321 702 NCHSLQE----LPADI-GKMKSLQILRLYACPHLRT----LPARICELVCLKYLNISQCVS 753 (830)
Q Consensus 702 ~c~~l~~----lp~~i-~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~L~~c~~ 753 (830)
+|..-.. +...+ ...++|++|.+.+|..... +-..+...+.|..|+|++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9964332 22222 3478999999999876432 333456689999999999754
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.73 E-value=0.0015 Score=71.14 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=102.4
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc--------------------cccCCceEEEE
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------------------SYFNNRILFLT 243 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~--------------------~~F~~~~~wv~ 243 (830)
.++|.+..++.+.+++....-...+-++|++|+||||+|+.+...-.-. .+++ +.+++
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~--~~~~~ 92 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD--VIEID 92 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC--EEEee
Confidence 4589999999999988754445678899999999999998886431100 1222 12333
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTt 317 (830)
.+......+ .+.+...+.... ..+++-++|+|+++.. ...+.+.. .. +.+.+|++|
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 222222222 122322221100 1245568899998743 34444443 22 345666666
Q ss_pred cccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 318 r~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
.+.. .. .....+++++++.++..+.+...+-.... ...++.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 4432 11 22357888899999988888776533221 1124578889999999887664443
No 110
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=2.5e-05 Score=60.16 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=4.2
Q ss_pred CCCCCCEEEee
Q 003321 691 GLQSLKNLSVT 701 (830)
Q Consensus 691 ~l~~L~~L~L~ 701 (830)
++++|++|+++
T Consensus 23 ~l~~L~~L~l~ 33 (61)
T PF13855_consen 23 NLPNLETLDLS 33 (61)
T ss_dssp TGTTESEEEET
T ss_pred CCCCCCEeEcc
Confidence 33333333333
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.0018 Score=72.39 Aligned_cols=175 Identities=12% Similarity=0.090 Sum_probs=103.6
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---ccc---------------ccCCceEEEEec
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTS---------------YFNNRILFLTVS 245 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---~~~---------------~F~~~~~wv~v~ 245 (830)
.++|-+.-++.+...+....-..++-++|+.|+||||+|+.+.+.-- -.. .+...++..+.+
T Consensus 15 eiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaa 94 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAA 94 (535)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccc
Confidence 46888888888888886544455778999999999999997764210 000 011112233322
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh----cCCCceEEEEecc
Q 003321 246 QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRF 319 (830)
Q Consensus 246 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtr~ 319 (830)
....++++...+ ...... -..+++-++|+|+++.. +..+.++. ..+.+++|++|.+
T Consensus 95 s~~gId~IReli-e~~~~~-----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 95 SNRGIDDIRELI-EQTKYK-----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred cccCHHHHHHHH-HHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 222333333222 211000 00245668899999853 44555543 2235676766655
Q ss_pred cc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 320 KF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 320 ~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
.. +. .....+++.+++.++....+.+.+-..+. ...++.+..|++.++|.+--+..+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 32 11 33467899999999998888765533221 123457889999999988655444
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.001 Score=75.19 Aligned_cols=179 Identities=11% Similarity=0.088 Sum_probs=103.5
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CC---------------ceEEEEec
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN---------------RILFLTVS 245 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~---------------~~~wv~v~ 245 (830)
.++|-+.-+..+.+++....-...+-++|+.|+||||+|+.+.+.-.-.... .+ .+++++..
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a 96 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA 96 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc
Confidence 4578777777777777644335678899999999999999887532111000 00 01122221
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc---C-CCceEEEEecc
Q 003321 246 QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVSRF 319 (830)
Q Consensus 246 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTtr~ 319 (830)
....++++. .+.+.+.. .-..+++-+||+|+++.. +..+.|... . +...+|++|..
T Consensus 97 ~~~~Id~iR-~L~~~~~~-----------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 97 SNRGIDDAK-RLKEAIGY-----------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred cccCHHHHH-HHHHHHHh-----------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 112222221 12111100 011456679999999854 445555442 2 34555555544
Q ss_pred c-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch-HHHHHHHHHh
Q 003321 320 K-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP-LALKVIGASL 383 (830)
Q Consensus 320 ~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~L 383 (830)
. .+. .....+++.+++.++....+...+..... ...++.+..|++.++|.+ .|+..+...+
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 222 22357899999999999888876643321 123457888999999965 6777766544
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.70 E-value=0.0005 Score=79.29 Aligned_cols=195 Identities=12% Similarity=-0.007 Sum_probs=99.4
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccC--CceEEEEecCC---CCHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--NRILFLTVSQS---PNVEQLRAKV 257 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~--~~~~wv~v~~~---~~~~~l~~~i 257 (830)
+.++|++..+..+...+. ......+.|+|++|+||||+|+.+++.......++ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia-~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA-SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 356899888888877764 34566899999999999999999986543333221 11225555421 1222221111
Q ss_pred HH---------------hhcCCCC--------------CCCCCCc-c-cchHHHHhhcCCcEEEEEeCCCCh--HhHHHh
Q 003321 258 WG---------------FVSGCDS--------------MEPNYVI-P-HWNLQIQSKLGSRCLVVLDDVWSL--AVLEQL 304 (830)
Q Consensus 258 ~~---------------~l~~~~~--------------~~~~~~~-~-~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l 304 (830)
+. ..+.... .+..+.. . .....++.+..++++++-|+.|.. ..|+.+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11 1000000 0000000 0 111223334566777776655532 235544
Q ss_pred hh----cCCCceEEE--Eecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 305 IF----RVPGCKTLV--VSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 305 ~~----~~~gs~iiv--Ttr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
.. ..+...+++ ||++.... .....+.+.+++.+|.+.++.+.+-... ....++....|.+++..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~---v~ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN---VHLAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHCCCcHH
Confidence 32 123334444 45543211 1224678889999999999988653211 1122345555555554444
Q ss_pred HHHHHHHH
Q 003321 374 LALKVIGA 381 (830)
Q Consensus 374 Lai~~~~~ 381 (830)
-|+..++.
T Consensus 390 raln~L~~ 397 (615)
T TIGR02903 390 KAVNILAD 397 (615)
T ss_pred HHHHHHHH
Confidence 55544443
No 114
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0056 Score=68.50 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=94.6
Q ss_pred CCcccccccchhhHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 180 LGNLMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
..+..-+|.++-+++|+++|-- .-.-+++++||++|+|||+|++.++ ....+.|- -++++.-.|..++
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA--~al~Rkfv----R~sLGGvrDEAEI- 392 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIA--KALGRKFV----RISLGGVRDEAEI- 392 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHH--HHhCCCEE----EEecCccccHHHh-
Confidence 3455668999999999999831 2345799999999999999999999 56666662 3556655554443
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh----------HhHHHhhh--------c-----CCCc
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------AVLEQLIF--------R-----VPGC 311 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~----------~~~~~l~~--------~-----~~gs 311 (830)
.+....--+.....+-..++.-+-++=+++||.++.. ..++-+-+ . +-=|
T Consensus 393 -------RGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 393 -------RGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -------ccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 2222211222222222333334667889999999732 11222211 1 1236
Q ss_pred eEE-EEecccccc------cccceEEccCCCHHHHHHHHHHHh
Q 003321 312 KTL-VVSRFKFST------VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 312 ~ii-vTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
.|+ |+|-+..-. ....++++.+-+.+|-.++-++|.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 665 444443221 234688999999999888877765
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0013 Score=75.14 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=102.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccC--------C---------------ce
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--------N---------------RI 239 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~--------~---------------~~ 239 (830)
..+||.+.-+..+.+++..+.-..-+-++|+.|+||||+|+.+.+.-....... + -+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv 103 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDV 103 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCce
Confidence 456999999999999887544456788999999999999999875311111000 0 01
Q ss_pred EEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceE
Q 003321 240 LFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKT 313 (830)
Q Consensus 240 ~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~i 313 (830)
+++.......++++. .|+..+... -..+++-++|+|+++.. ...+.|.. . .+.+.+
T Consensus 104 ~e~~a~s~~gvd~IR-eIie~~~~~-----------------P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~f 165 (598)
T PRK09111 104 LEMDAASHTGVDDIR-EIIESVRYR-----------------PVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKF 165 (598)
T ss_pred EEecccccCCHHHHH-HHHHHHHhc-----------------hhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEE
Confidence 122222222222221 222221100 01345567999999754 34444443 2 345666
Q ss_pred EEEe-cccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 314 LVVS-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 314 ivTt-r~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
|++| ....+. .....+++..++.++....+.+.+-.... ...++....|++.++|.+.-+...
T Consensus 166 Il~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 166 IFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred EEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6555 333222 23467889999999998888776532221 122457888999999988665443
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0011 Score=72.76 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=96.7
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEE-ecCCCCHHHHHHHHHHhhc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT-VSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~~~l~ 262 (830)
.++|.+.-++.+..++..+.-...+-++|+.|+||||+|+.+.+.-.-...+...- |.. +...+..-..-+.+.....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~-~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDAD-YLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccc-ccccCCCCCCCCHHHHHHhcCCC
Confidence 45788877888888776433345688999999999999998874321111010000 000 0000000000001100000
Q ss_pred CCC---CCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceEEEEecc-cccc----
Q 003321 263 GCD---SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVSRF-KFST---- 323 (830)
Q Consensus 263 ~~~---~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTtr~-~~~~---- 323 (830)
... ........+.+....+.+ .+++-++|+|+++.. +.++.+.. . .+.+.+|++|.. ..+.
T Consensus 96 ~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~ 175 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (397)
T ss_pred CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHH
Confidence 000 000000011111111111 345668899999853 34555543 2 235566655532 2222
Q ss_pred cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 324 VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 324 ~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
.....+++.+++.++..+.+...+-... ....++.+..+++.++|.+--+.
T Consensus 176 sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 176 SRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2235788999999998887776552211 11235678999999999775443
No 117
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=3.8e-05 Score=59.13 Aligned_cols=58 Identities=26% Similarity=0.471 Sum_probs=44.5
Q ss_pred CCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEecccccc
Q 003321 693 QSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCV 752 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~ 752 (830)
++|++|++++| .+..+| ..+..+++|++|++++|.. ..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 46888888887 466776 4678889999999987654 4454 567889999999998864
No 118
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.67 E-value=0.0016 Score=66.23 Aligned_cols=182 Identities=14% Similarity=0.146 Sum_probs=109.1
Q ss_pred hHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHhcccccc-----cccCCceEEEEecCCCCHHHHHHHHHHhhcCC
Q 003321 192 KNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVT-----SYFNNRILFLTVSQSPNVEQLRAKVWGFVSGC 264 (830)
Q Consensus 192 ~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-----~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 264 (830)
.+++.+++... ....-+.|||.+|+|||++++++...+-.. ..+ -|+.|.....++...+...|+.+++..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~--PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI--PVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc--cEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555432 345679999999999999999998643221 122 255778888999999999999999765
Q ss_pred CCCCCCCCcccchH-HHHhh-cCCcEEEEEeCCCCh---------H---hHHHhhhcCCCceEEEEecccccc-------
Q 003321 265 DSMEPNYVIPHWNL-QIQSK-LGSRCLVVLDDVWSL---------A---VLEQLIFRVPGCKTLVVSRFKFST------- 323 (830)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~l-~~kr~LlVlDdv~~~---------~---~~~~l~~~~~gs~iivTtr~~~~~------- 323 (830)
.... +....... ....+ .-+--+||+|++.+. + .+..+.....=+-|.|-|+....+
T Consensus 124 ~~~~--~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 124 YRPR--DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cCCC--CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 4322 22222221 22222 345568889999863 1 233333344556667777654322
Q ss_pred -cccceEEccCCCHH-HHHHHHHHHh--cCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 324 -VLNDTYEVELLRED-ESLSLFCYSA--FGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 324 -~~~~~~~l~~L~~~-e~~~Lf~~~a--f~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
.-...+.++....+ |...|..... +.-..+..-..+++++.|...++|+.=-+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 22356677775544 4444443221 121222233346799999999999865443
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.65 E-value=0.00049 Score=75.04 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=92.6
Q ss_pred ccccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 183 LMGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
..+.|++..++++.+.+.. . ...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~------~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT------FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC------EEEeeh----
Confidence 4578999999999887632 1 34567899999999999999999953 2222 233321
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-------------Hh---HHHhhh---cC--
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AV---LEQLIF---RV-- 308 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-------------~~---~~~l~~---~~-- 308 (830)
.++.... .+ .........++.. ...+.+|+|||++.. +. +..+.. +.
T Consensus 199 ~~l~~~~----~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 SELVQKF----IG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHHhHhh----cc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111110 00 0011111222221 346789999999753 11 222221 11
Q ss_pred -CCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 309 -PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 309 -~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
.+..||.||...... ..+..++++..+.++-.++|+.+..+..-.... ....+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCC
Confidence 245666666543211 234578999999999999999876433221111 245566666664
No 120
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0023 Score=72.59 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=101.3
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CC-----------------ceEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN-----------------RILFL 242 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~-----------------~~~wv 242 (830)
..++|.+.-++.|.+++..+.-...+.++|+.|+||||+|+.+.+.-.-.... +| .++.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 35689888888899888754445567899999999999999987431110000 00 11122
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh---cCC-CceEEEE
Q 003321 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVV 316 (830)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivT 316 (830)
+.+....++++ +++...+.. .-..+++-++|+|+++. ....+.|+. ..| ...+|++
T Consensus 93 daas~~gvd~i-Rel~~~~~~-----------------~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 93 DAASHGGVDDT-RELRDRAFY-----------------APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred ccccccCHHHH-HHHHHHHHh-----------------hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 22211122222 111111100 00134566889999984 344555543 333 4555544
Q ss_pred e-cccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHHHHH
Q 003321 317 S-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGAS 382 (830)
Q Consensus 317 t-r~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 382 (830)
| ....+. .....+++..++.++..+.+.+.+-..+. ...++....|++.++|.+- |+..+-..
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 333322 23467999999999988888765533221 1224567888999999774 44444443
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0025 Score=73.44 Aligned_cols=175 Identities=11% Similarity=0.079 Sum_probs=99.9
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccC----C---------------ceEEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN----N---------------RILFLT 243 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~----~---------------~~~wv~ 243 (830)
..+||.+.-++.+..++....-...+-++|+.|+||||+|+.++..-.....+. | .++.++
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~ 95 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMD 95 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEe
Confidence 356898888888888886544445678999999999999999874321111000 0 011111
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTt 317 (830)
.+....++++ +.+.+.+... -..+++-++|+|+++.. +..+.|.. . .+.+.+|++|
T Consensus 96 ~~~~~~vd~i-r~ii~~~~~~-----------------p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t 157 (585)
T PRK14950 96 AASHTSVDDA-REIIERVQFR-----------------PALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILAT 157 (585)
T ss_pred ccccCCHHHH-HHHHHHHhhC-----------------cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 1111222221 1121111100 01245678999999743 44555543 2 2355666655
Q ss_pred ccc-ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 318 RFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 318 r~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
... .+. .....+++..++.++....+...+-..+. ...++.+..|++.++|.+..+.-
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 432 221 22357888889999888888776533221 12245788999999998865543
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0018 Score=76.62 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=98.5
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CC-----------------ceEEEE
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN-----------------RILFLT 243 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~-----------------~~~wv~ 243 (830)
.+||.+..++.|..++..+.-...+.++|+.|+||||+|+.+.+...-.+.. .| .+++++
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eid 95 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEID 95 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEec
Confidence 4688888888888888754445578899999999999999886432211110 00 012222
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEe
Q 003321 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVS 317 (830)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTt 317 (830)
......++++.. +.+.+. ..-..+++-++|||+++.. +..+.|+. ..+ .+.+|++|
T Consensus 96 aas~~~Vd~iR~-l~~~~~-----------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 96 AASHGGVDDARE-LRERAF-----------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred ccccCCHHHHHH-HHHHHH-----------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 222222333221 211110 0012355667889999843 44444443 333 45555555
Q ss_pred c-ccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 318 R-FKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 318 r-~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
. ...+. .....|++..++.++..+.+.+.+-..+ . ....+....|++.++|.+..+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-V--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHcCCCHHHH
Confidence 3 33322 3356789999999988888766542221 1 122446788999999988443
No 123
>PF14516 AAA_35: AAA-like domain
Probab=97.61 E-value=0.015 Score=62.02 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=117.1
Q ss_pred CcccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-----CCHHHHHH
Q 003321 181 GNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-----PNVEQLRA 255 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-----~~~~~l~~ 255 (830)
+.+.-|+|....+++.+.|.+ .-..+.|.|+-.+|||||..++.+..+- ..| .++++++..- .+...+++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~--~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~--~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ--PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY--RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc--CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC--EEEEEEeecCCCcccCCHHHHHH
Confidence 345567888666677777753 4568999999999999999999854322 334 4558877652 24566666
Q ss_pred HHHHhhcCCCCCCC---------CCCcccchHHHHh--h--cCCcEEEEEeCCCCh--------HhHHHhhhc------C
Q 003321 256 KVWGFVSGCDSMEP---------NYVIPHWNLQIQS--K--LGSRCLVVLDDVWSL--------AVLEQLIFR------V 308 (830)
Q Consensus 256 ~i~~~l~~~~~~~~---------~~~~~~~~~~~~~--l--~~kr~LlVlDdv~~~--------~~~~~l~~~------~ 308 (830)
.+...+...-.... ..........++. + ..++.+|+||+|+.. +.+..++.. .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 55555433222111 0011111222221 1 478999999999843 122222221 1
Q ss_pred C--CceEEEEeccc---ccc-------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 309 P--GCKTLVVSRFK---FST-------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 309 ~--gs~iivTtr~~---~~~-------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+ ..-.+|...+. ... .....+++++++.+|...|...+-.. ......++|...+||+|.-+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHCCCHHHH
Confidence 1 12112222111 111 22357889999999999999876321 11234899999999999999
Q ss_pred HHHHHHhcCC
Q 003321 377 KVIGASLREQ 386 (830)
Q Consensus 377 ~~~~~~L~~~ 386 (830)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0024 Score=73.36 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=98.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccc-c---CC-----------ceEEEEecCC
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY-F---NN-----------RILFLTVSQS 247 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~-F---~~-----------~~~wv~v~~~ 247 (830)
..++|.+..+..+...+....-...+-++|+.|+||||+|+.++..---... . +| .++++.....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn 97 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASN 97 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecccc
Confidence 3468888888888888875555667789999999999999988642110000 0 00 0111211111
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEE-EEeccc
Q 003321 248 PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTL-VVSRFK 320 (830)
Q Consensus 248 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~ii-vTtr~~ 320 (830)
..+.++ +.+.+.+... -..+++-++|+|+++.. ..+..|+. ..| ...+| +||+..
T Consensus 98 ~~vd~I-ReLie~~~~~-----------------P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 98 NGVDEI-RELIENVKNL-----------------PTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred CCHHHH-HHHHHHHHhc-----------------hhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 112221 1222211100 01356678899999743 45555554 223 44444 444333
Q ss_pred ccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 321 FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 321 ~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
.+. .....+++.+++.++....+...+-..+. ...++.+..|++.++|.+--+..
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 332 23468899999999998888765422221 11234678899999997654433
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.59 E-value=0.0013 Score=66.24 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCC
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYV 272 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 272 (830)
..+.++.......+.+.|+|.+|+|||+||+.+++.. ..... .+.+++..... ..+
T Consensus 30 ~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~--~~~~i~~~~~~------~~~--------------- 85 (227)
T PRK08903 30 ARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR--NARYLDAASPL------LAF--------------- 85 (227)
T ss_pred HHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC--cEEEEehHHhH------HHH---------------
Confidence 3333333322445688999999999999999998642 12222 23344433211 000
Q ss_pred cccchHHHHhhcCCcEEEEEeCCCChH--hHHHh---hhc--CCCc-eEEEEecccccc---------c--ccceEEccC
Q 003321 273 IPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQL---IFR--VPGC-KTLVVSRFKFST---------V--LNDTYEVEL 333 (830)
Q Consensus 273 ~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l---~~~--~~gs-~iivTtr~~~~~---------~--~~~~~~l~~ 333 (830)
.. ....-+||+||++... .-..+ ... ..+. .+|+|++..... . ....+++++
T Consensus 86 --------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 --------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred --------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 00 1223478899997432 21122 221 1233 366666543211 1 135789999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 334 LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 334 L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
+++++-..++.+.+-... -...++....+++.+.|.+..+.-+-..+
T Consensus 157 l~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999887777765432111 12234578888889999998887666554
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.59 E-value=0.00049 Score=82.21 Aligned_cols=174 Identities=15% Similarity=0.081 Sum_probs=92.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---cccc-cCCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTSY-FNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---~~~~-F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..+|||+.++.++++.|... ...-+.++|.+|+||||+|+.+...-. +... ...+++.+.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---------
Confidence 46799999999999988653 344556999999999999999985311 1111 122333333331000
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH-------hHH---HhhhcC-CC-ceEEEEecccc---
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-------VLE---QLIFRV-PG-CKTLVVSRFKF--- 321 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~-------~~~---~l~~~~-~g-s~iivTtr~~~--- 321 (830)
+.. ...+....++..+... .+++.+|++|++.... .-+ -+.+.. .| -++|-+|....
T Consensus 257 ----g~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 257 ----GAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKK 330 (852)
T ss_pred ----ccc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhh
Confidence 000 0000111222222222 2568999999987531 111 232321 23 45555555421
Q ss_pred -c----c--cccceEEccCCCHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHcCCc
Q 003321 322 -S----T--VLNDTYEVELLREDESLSLFCYSAFG-QKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 322 -~----~--~~~~~~~l~~L~~~e~~~Lf~~~af~-~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
. + .....+.++.++.++..+++....-. .....-...++....+++.+.+.
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 1 1 33468999999999999997543311 01111112244566666666553
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.00086 Score=74.32 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccc-ccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
..-+.|+|..|+|||.|++++.+. +.. +-..++++++. .++...+...+.... .......+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~--------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSG------DEFARKAVDILQKTH--------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 356899999999999999999863 222 22234444433 455666655543210 1111122222
Q ss_pred cCCcEEEEEeCCCCh---HhH-HHhhh-----cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVL-EQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~-~~l~~-----~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
...-+|||||+... +.+ +.+.. ...|..||+|+...... ..+-++.+++++.++-.++
T Consensus 205 -~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 -CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred -ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 24458999999743 122 22221 12355788887644211 2345688999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
+.+++-... ......++...-|++.++|.|-.+.-+-.
T Consensus 284 L~~~~~~~g-l~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQN-IKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcC-CCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 988774322 11123466889999999999987765543
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.58 E-value=0.00067 Score=67.89 Aligned_cols=177 Identities=16% Similarity=0.122 Sum_probs=109.7
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH--Hh
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW--GF 260 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~--~~ 260 (830)
..++|.+..+.-+.+.+.. ....+...+|++|.|||+-|+.++..-.-.+-|+++++=.++|......-+..++- ..
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fak 114 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAK 114 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHH
Confidence 4567777777777777775 67889999999999999999988765444678888886667776544332222211 11
Q ss_pred hcCCCCCCCCCCcccchHHHHhhcCCc-EEEEEeCCCC--hHhHHHhhh---cCC-CceEEEEecc-cccc----cccce
Q 003321 261 VSGCDSMEPNYVIPHWNLQIQSKLGSR-CLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVVSRF-KFST----VLNDT 328 (830)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~l~~kr-~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivTtr~-~~~~----~~~~~ 328 (830)
+...... ... ...++ -.+|||+++. .+.|..++. .++ .++.++.|.. ..+- ....-
T Consensus 115 l~~~~~~--~~~----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 115 LTVLLKR--SDG----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred Hhhcccc--ccC----------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHH
Confidence 1111000 000 01223 3678999985 467887775 333 3444443332 2211 23356
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLa 375 (830)
|..++|.+++..+-+...+-.++.. ...+..+.|++.++|----
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~---~d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVD---IDDDALKLIAKISDGDLRR 226 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCcHHH
Confidence 8889999999888888877544332 2345788999999885443
No 129
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.56 E-value=0.00022 Score=73.36 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=98.6
Q ss_pred cccccccchhhHHHHHHHhcCCC--ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 182 NLMGIGMALGKNKVKEMVIGRDD--LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~--~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.+.+.+|+.++..+..++-..+. +..|-|+|.+|.|||.+.+.+++.. ..+ ..|+++-+.++...+...|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~----~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE----NVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc----ceeeehHHhccHHHHHHHHHH
Confidence 45678999999999998865543 4566899999999999999999654 222 249999999999999999999
Q ss_pred hhcCC-CCCCCCCC-cccchHH---H-H--hh--cCCcEEEEEeCCCChHhHHHhh-----h-----cCCCceEEEEecc
Q 003321 260 FVSGC-DSMEPNYV-IPHWNLQ---I-Q--SK--LGSRCLVVLDDVWSLAVLEQLI-----F-----RVPGCKTLVVSRF 319 (830)
Q Consensus 260 ~l~~~-~~~~~~~~-~~~~~~~---~-~--~l--~~kr~LlVlDdv~~~~~~~~l~-----~-----~~~gs~iivTtr~ 319 (830)
.+... ........ .+..... + + .. .++.++||||+++...+.+... . ..+... |+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~-iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIV-IILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceE-EEEecc
Confidence 88422 11111001 0111111 1 1 11 3579999999998654433222 1 123333 333332
Q ss_pred cccc--------cccceEEccCCCHHHHHHHHHHH
Q 003321 320 KFST--------VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 320 ~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
.... ....+...+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2111 11234566778888888888653
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0015 Score=72.31 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
..-+.|+|.+|+|||.||+++++.- .+.+....+.|++. .++...+...+... .. ....+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~---~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL---NEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH---HHHHHHHH
Confidence 4569999999999999999999632 22233445666654 34555555544221 11 11112222
Q ss_pred CCcEEEEEeCCCCh--------HhHHHhhhc-CCCceEEEEecccccc------------cccceEEccCCCHHHHHHHH
Q 003321 285 GSRCLVVLDDVWSL--------AVLEQLIFR-VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (830)
Q Consensus 285 ~kr~LlVlDdv~~~--------~~~~~l~~~-~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (830)
.+.-+|++||++.. +.+..+... -.|..||+||...... ...-++++++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999843 112222111 2356788888633211 22347889999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 344 ~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
.+.+-...- ...+++..-|++.+.|..-.+
T Consensus 273 ~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG---ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC---CCCHHHHHHHHhccccCHHHH
Confidence 887643211 122457888888888754433
No 131
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=7.8e-05 Score=86.26 Aligned_cols=148 Identities=19% Similarity=0.159 Sum_probs=75.7
Q ss_pred CccceeccccccccC-ccccccC-CCCCCCEEEeeCcCCC-CccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 669 PCLTELTFDHCDDLM-KLPPSIC-GLQSLKNLSVTNCHSL-QELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~-~lp~~i~-~l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
.+|++|+++|...+. ..|..+| .||+|+.|.++|-... .++-.-..++++|..|++++++ +..+ .+++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 345555555533221 2233333 4567777777662211 1122333466777777777743 3344 56677777777
Q ss_pred eccccccccC-cchhhhccCCCCcEEeccCccCCccC--C----ccccccccCceeecCchhhhh--HHHHhhhCCCcee
Q 003321 746 LNISQCVSLS-CLPQGIGNLIRLEKIDMRECSQIWSL--P----KSVNSLKSLRQVICEEDVSWA--WKDLEKTLPNLHV 816 (830)
Q Consensus 746 L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~l~~l--p----~~~~~l~~L~~l~~~~~~~~~--~~~l~~~lp~L~~ 816 (830)
|.+.+-.... .--..+.+|++|+.||+|..+..... . +.-..|++|+.|+|++..... ...+...-|+|+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7665532221 11123556777777777765532221 1 122337788888888653222 3344446666654
Q ss_pred ee
Q 003321 817 QV 818 (830)
Q Consensus 817 ~~ 818 (830)
..
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 132
>PRK06620 hypothetical protein; Validated
Probab=97.53 E-value=0.00093 Score=66.19 Aligned_cols=127 Identities=12% Similarity=-0.040 Sum_probs=75.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcC
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 285 (830)
+.+-|+|++|+|||+|++.+++... . . ++. ..+... +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~-~~~--~~~~~~-----------------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----Y-IIK--DIFFNE-----------------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----E-Ecc--hhhhch-----------------------------hHH-h
Confidence 6789999999999999999885421 1 1 221 000000 001 1
Q ss_pred CcEEEEEeCCCChHh--HHHhhh--cCCCceEEEEecccccc----------cccceEEccCCCHHHHHHHHHHHhcCCC
Q 003321 286 SRCLVVLDDVWSLAV--LEQLIF--RVPGCKTLVVSRFKFST----------VLNDTYEVELLREDESLSLFCYSAFGQK 351 (830)
Q Consensus 286 kr~LlVlDdv~~~~~--~~~l~~--~~~gs~iivTtr~~~~~----------~~~~~~~l~~L~~~e~~~Lf~~~af~~~ 351 (830)
..-++++||++...+ +-.+.. .-.|..+|+|++..... ...-++++++++.++-..+..+.+-..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 234788999974321 222211 13477899998865432 223479999999999888887765321
Q ss_pred CCCCchhHHHHHHHHHHcCCchHH
Q 003321 352 TIPPSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 352 ~~~~~~~~~~~~~i~~~c~GlPLa 375 (830)
.. ...+++..-|++++.|---.
T Consensus 164 ~l--~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 164 SV--TISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CC--CCCHHHHHHHHHHccCCHHH
Confidence 11 12245777777777665443
No 133
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=1.7e-05 Score=87.80 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=17.8
Q ss_pred CcEeccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 743 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 743 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
|+.++++++ .+...+..+..+.++..|++.++.
T Consensus 234 L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGN-RISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccC-ccccccccccccccccccchhhcc
Confidence 556666653 333333445556666666666554
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0049 Score=70.91 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=102.5
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---------------------cccccCCceEEE
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---------------------VTSYFNNRILFL 242 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---------------------~~~~F~~~~~wv 242 (830)
.++|.+..++.+..++..+.-...+-++|+.|+||||+|+.+...-. ...+|+ +..+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~~l 95 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IHEL 95 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eEEe
Confidence 46898888888888887544456788999999999999988764211 112333 2233
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEE
Q 003321 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVV 316 (830)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivT 316 (830)
+.+....++++.. ++.++.... ..+++-++|+|+++.. +.++.|.. ..| .+.+|++
T Consensus 96 d~~~~~~vd~Ir~-li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 96 DAASNNSVDDIRN-LIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred cccccCCHHHHHH-HHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3333333333332 222221110 1244558899998854 34555543 333 4555554
Q ss_pred ec-ccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 317 SR-FKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 317 tr-~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
|. ...+. .....+++.+++.++....+.+.+-..+- ...++.+..|++.++|-.--+.
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 43 33222 33567999999999998888776533221 1223567889999999765443
No 135
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.47 E-value=0.0077 Score=72.03 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=36.7
Q ss_pred cccccccchhhHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 182 NLMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+...+|.+..++.+.+++.. .....++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568988888888887632 123458999999999999999999953
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0052 Score=70.35 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=95.0
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEE-ecCCCCHHHHHHHHHHhh
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT-VSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~~~l 261 (830)
..++|.+.-+..+.+++..+.-...+-++|+.|+||||+|+.+.+.-.....++... |.. +...++.-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~-~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPV-YLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccc-cccccCCCCccCHHHHHHhccC
Confidence 356888888888888876433445688999999999999988764321111110000 000 000000000000000000
Q ss_pred cCCC---CCCCCCCcccchHHHHh-----hcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEe-cccccc---
Q 003321 262 SGCD---SMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVS-RFKFST--- 323 (830)
Q Consensus 262 ~~~~---~~~~~~~~~~~~~~~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTt-r~~~~~--- 323 (830)
.... ........+.++...+. ..+.+-++|+|+++.. ...+.|.. .-| .+.+|++| +...+.
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 00000011112221111 1345668899998754 34454543 333 34544444 333222
Q ss_pred -cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH
Q 003321 324 -VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL 374 (830)
.....+++.+++.++....+.+.+-..+. ...++.+..+++.++|.+-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 33567899999999988777665432211 1234578899999999654
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0047 Score=70.19 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=100.9
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc---ccCCc---------------eEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS---YFNNR---------------ILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~---~F~~~---------------~~wv~v 244 (830)
..++|-+..++.+..++....-...+-++|+.|+||||+|+.+++.-.-.. .+++. +.++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg 95 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG 95 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC
Confidence 356898888899999887655556788999999999999999875311110 11111 112211
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhc---C-CCceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTtr 318 (830)
.....++++. ++.+.+.. .-..+++-++|+|+++.. ..++.+... . +.+.+|++|.
T Consensus 96 as~~~vddIr-~l~e~~~~-----------------~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 96 ASNTSVQDVR-QIKEEIMF-----------------PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred cccCCHHHHH-HHHHHHHh-----------------chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 1111222221 11111100 001356668999999854 445555542 2 2455555553
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
. ..+. .....++..+++.++-.+.+...+...+. ...++.+..|++.++|.+-.+..
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 2221 23456889999999988888776643321 12345778899999998754433
No 138
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0046 Score=68.60 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=96.3
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc---------------------cccCCceEEE
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT---------------------SYFNNRILFL 242 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---------------------~~F~~~~~wv 242 (830)
.++|.+..++.+.+++..+.-...+-++|+.|+||||+|+.+.+.-.-. .+++ +.++
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d--~~~i 95 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD--VLEI 95 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc--eEEe
Confidence 4689888888888888654445678899999999999999886421100 0111 1122
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEE
Q 003321 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVV 316 (830)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivT 316 (830)
.-......+++. .+.+.+.- ....+++-++|+|+++.. +..+.|.. .. +...+|++
T Consensus 96 ~g~~~~gid~ir-~i~~~l~~-----------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 96 DGASHRGIEDIR-QINETVLF-----------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred eccccCCHHHHH-HHHHHHHh-----------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 111111222221 12111100 001356678999998743 33333332 22 35556666
Q ss_pred ecc-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHH
Q 003321 317 SRF-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 317 tr~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLa 375 (830)
|.. ..+. .....+++.+++.++....+...+-..+. ...++.+..|++.++|.+--
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 533 2221 23457899999999988887765532211 12345788899999997643
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.44 E-value=0.0015 Score=67.31 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...-+.++|++|+||||+|+.+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH
Confidence 445678999999999999999975
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.42 E-value=0.00067 Score=80.48 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---cccccc-CCceEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSYF-NNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.++..- .+...+ ...++.++++ .+. .
T Consensus 183 ~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l~----a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SLL----A 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HHh----h
Confidence 5799999999999888644 34455699999999999999998531 111112 2233333221 111 0
Q ss_pred hhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-----------HhHHHhhhcC-CC-ceEEEEeccc-----
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-----------AVLEQLIFRV-PG-CKTLVVSRFK----- 320 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-----------~~~~~l~~~~-~g-s~iivTtr~~----- 320 (830)
+.. ...+....++..++.. ..++.+|++|+++.. +.-+-+++.. .| -++|-+|...
T Consensus 252 ---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 252 ---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 000 0001111223333333 345789999998732 1122233322 23 2444444331
Q ss_pred ---ccc--cccceEEccCCCHHHHHHHHHHHh
Q 003321 321 ---FST--VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 321 ---~~~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
..+ .....++++.++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 223578999999999999998644
No 141
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0086 Score=68.39 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=98.3
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc--------------------cccCCceEEE
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------------------SYFNNRILFL 242 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~--------------------~~F~~~~~wv 242 (830)
..++|.+.-+..+.+.+....-...+-++|+.|+||||+|+.+...-... .+++ ++.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d--v~ei 93 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD--VIEI 93 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC--eEEe
Confidence 45689988888899888765556678889999999999999886321100 0111 1122
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEE
Q 003321 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVV 316 (830)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivT 316 (830)
+.+....++++. .+...+... -..+++-++|+|+++.. ..+..|.. .-| ...+|++
T Consensus 94 daas~~~vd~ir-~i~~~v~~~-----------------p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIla 155 (559)
T PRK05563 94 DAASNNGVDEIR-DIRDKVKYA-----------------PSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILA 155 (559)
T ss_pred eccccCCHHHHH-HHHHHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 222112222111 111111000 01356668899999844 45666654 223 3344444
Q ss_pred e-cccccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 317 S-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 317 t-r~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
| ....+. .....++..+++.++....+...+-..+- ...++.+..|++.++|.+..+.
T Consensus 156 tt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 156 TTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred eCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 333222 22456788889999888888776532221 1124567888889988775443
No 142
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0078 Score=67.31 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=97.8
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---ccc----------------ccCCceEEEEe
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTS----------------YFNNRILFLTV 244 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---~~~----------------~F~~~~~wv~v 244 (830)
.++|.+.-...+.+.+....-...+.++|+.|+||||+|+.++..-. ... .|.+ ++++..
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d-~~eida 95 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD-LIEIDA 95 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc-EEEEeC
Confidence 46788888888888887544456678899999999999998764211 000 1111 112222
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtr 318 (830)
+....++++ +.+...+... -..+++-++|+|+++.. +..+.+.. ..| ...+|++|.
T Consensus 96 as~~gvd~i-r~I~~~~~~~-----------------P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 96 ASNRGIDDI-RALRDAVSYT-----------------PIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred ccCCCHHHH-HHHHHHHHhC-----------------cccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 222222221 1111111000 01356779999999743 34444443 223 444444443
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
. ..+. .....+++.+++.++-...+...+-...- ...++.+..+++.++|.+..+...
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2211 23457889999999988887765532221 122456788899999977654433
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0082 Score=69.12 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=97.2
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.++|.+..+..+..++....-...+-++|+.|+||||+|+.++..-.-. ..+... ...+..-...+.+......
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~-----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT-----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC-----CCCCcccHHHHHHhcCCCc
Confidence 4578888888888888754334577899999999999999987532111 100000 0000101111111111000
Q ss_pred CC---CCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhhh---cCC-CceEEEEeccc-ccc----c
Q 003321 264 CD---SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSRFK-FST----V 324 (830)
Q Consensus 264 ~~---~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtr~~-~~~----~ 324 (830)
.. ........+.++...... .+++-++|+|+++.. +.++.|+. .-| ...+|++|.+. .+. .
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 00 000001111122221111 245668899999853 45555554 233 34444444432 221 2
Q ss_pred ccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 325 LNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 325 ~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
....+++..++.++....+...+-.... ...++.+..|++.++|.+..+..+
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3456788889998888777665532211 112356889999999988655443
No 144
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.0001 Score=85.24 Aligned_cols=127 Identities=23% Similarity=0.238 Sum_probs=89.0
Q ss_pred CCCCCEEEeeCcCCCC-ccchhcC-CCCCCCEEEcccCCCC-CccchhhcCCCCCcEeccccccccCcchhhhccCCCCc
Q 003321 692 LQSLKNLSVTNCHSLQ-ELPADIG-KMKSLQILRLYACPHL-RTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLE 768 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~-~lp~~i~-~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~ 768 (830)
-.+|++|+++|..... ..|..++ .||+|+.|.+.+-... ..+-....++|+|..||||+ ++++.+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHH
Confidence 3689999999865443 3444555 4899999999873221 22334456899999999999 566666 7899999999
Q ss_pred EEeccCccCCc-cCCccccccccCceeecCchhhhhHH-------HHhhhCCCceeeecc
Q 003321 769 KIDMRECSQIW-SLPKSVNSLKSLRQVICEEDVSWAWK-------DLEKTLPNLHVQVPA 820 (830)
Q Consensus 769 ~L~l~~~~~l~-~lp~~~~~l~~L~~l~~~~~~~~~~~-------~l~~~lp~L~~~~~~ 820 (830)
.|.+.+-.... .--..+.+|++|+.||++........ +....+|+|+.....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 99998765222 11235778999999998765333322 233579999887554
No 145
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.33 E-value=1.1e-05 Score=83.35 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=127.8
Q ss_pred ccCceEEEccccCCccccCCC-CCCCCccccCeeeecccc-cC--ccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 591 EKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVS-IS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 591 ~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
..||.|.+.++..-. ...+ ....++++++.|.+.++. ++ .+-..-..+.+|++|++..|...... .+..+..
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--SLKYLAE 213 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--HHHHHHH
Confidence 357888887764321 1111 123577888888888775 11 11111234678888888876543221 1112345
Q ss_pred CCCccceeccccccccCc--cccccCCCCCCCEEEeeCcCCCCc--cchhcCCCCCCCEEEcccCCCCCccc--hhhcCC
Q 003321 667 TLPCLTELTFDHCDDLMK--LPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMKSLQILRLYACPHLRTLP--ARICEL 740 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~l 740 (830)
.+++|++|++++|..+.. +-....++..|+.+.+.||..+.. +-..-+...-+..+++..|..+...- ..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 688999999999876654 222234566677777778765432 11111233445555555665554322 112345
Q ss_pred CCCcEeccccccccCcchhh--hccCCCCcEEeccCccCCccCC--ccccccccCceeecCch---hhhhHHHHhhhCCC
Q 003321 741 VCLKYLNISQCVSLSCLPQG--IGNLIRLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEED---VSWAWKDLEKTLPN 813 (830)
Q Consensus 741 ~~L~~L~L~~c~~l~~lp~~--l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~l~~~~~---~~~~~~~l~~~lp~ 813 (830)
..|+.|+.++|..+...+-+ ..+..+|+.|.+++|..+...- ..-.+.+.|+.++..++ ...+...+..+-|.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 67788888877776654432 3456778888888877544322 11123455555544333 33334455566677
Q ss_pred ceeeeccccccC
Q 003321 814 LHVQVPAKCFSL 825 (830)
Q Consensus 814 L~~~~~~~~~~l 825 (830)
|+...+..|...
T Consensus 374 lr~lslshce~i 385 (483)
T KOG4341|consen 374 LRVLSLSHCELI 385 (483)
T ss_pred hccCChhhhhhh
Confidence 766666655543
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=97.32 E-value=0.0054 Score=63.75 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=65.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcC
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 285 (830)
..+.++|++|+||||+|+.++....-...-...- |+.++ ..++. ....+.. .......++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-~~~v~----~~~l~----~~~~g~~-------~~~~~~~l~~a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGH-LLTVT----RDDLV----GQYIGHT-------APKTKEVLKKA-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc-eEEec----HHHHH----HHHhccc-------hHHHHHHHHHc--
Confidence 3578999999999999999974211111111111 44444 11222 2221111 00111122221
Q ss_pred CcEEEEEeCCCCh-----------HhHHHhhh---c-CCCceEEEEeccccc--------c---cccceEEccCCCHHHH
Q 003321 286 SRCLVVLDDVWSL-----------AVLEQLIF---R-VPGCKTLVVSRFKFS--------T---VLNDTYEVELLREDES 339 (830)
Q Consensus 286 kr~LlVlDdv~~~-----------~~~~~l~~---~-~~gs~iivTtr~~~~--------~---~~~~~~~l~~L~~~e~ 339 (830)
..-+|+||++... +..+.+.. . ..+.+||+++..... . .....+++++++.+|-
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2348899999642 22233322 2 234566666643221 1 3345789999999999
Q ss_pred HHHHHHHhc
Q 003321 340 LSLFCYSAF 348 (830)
Q Consensus 340 ~~Lf~~~af 348 (830)
.+++...+-
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 999887763
No 147
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.32 E-value=0.0016 Score=72.26 Aligned_cols=147 Identities=19% Similarity=0.178 Sum_probs=82.0
Q ss_pred cccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccc----cCCceEEEEecCC
Q 003321 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY----FNNRILFLTVSQS 247 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~~wv~v~~~ 247 (830)
.+.|.+..++++.+.+.. -...+-+.++|++|.|||++|+++++. .... ......++++...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccch
Confidence 456788888888887631 134566899999999999999999964 2222 1122334544421
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-----hcCCcEEEEEeCCCChH--------------hHHHhhh--
Q 003321 248 PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSLA--------------VLEQLIF-- 306 (830)
Q Consensus 248 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-----l~~kr~LlVlDdv~~~~--------------~~~~l~~-- 306 (830)
++... ..+ .....+...++. ..+++++|+||+++... .+..+..
T Consensus 261 ----eLl~k----yvG-------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ----ELLNK----YVG-------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ----hhccc----ccc-------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11000 000 000011111111 13578999999997421 1223322
Q ss_pred -cC---CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHh
Q 003321 307 -RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 307 -~~---~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
+. ++..||.||..... + ..+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 21 23344444433221 1 234568999999999999998875
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.28 E-value=0.0023 Score=71.59 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccccc-CCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
..-+.|+|.+|+|||+||+++++. +...+ ...+.+++.. ++...+...+... .. ....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~---~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM---EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH---HHHHHHH
Confidence 456899999999999999999963 44443 3344455433 3333444433211 01 1112222
Q ss_pred cCCcEEEEEeCCCCh---H-hHHHhhh-----cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---A-VLEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~-~~~~l~~-----~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
. +.-+|||||++.. + ..+.+.. ...|..|++||...... ....++++++++.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 2 3448999999742 1 1112221 12356688887654211 2235789999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+.+.+-... ....+++..-|++.+.|..-.+
T Consensus 289 l~~~~~~~~---~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEG---IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcC---CCCCHHHHHHHHcCcCCCHHHH
Confidence 998874321 1223568888999998876643
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.25 E-value=0.018 Score=65.09 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccccc-CCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...+.|+|..|+|||.|++++++. ....+ ...+++++. .++...+...+... .. ....+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-------~~---~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-------KG---DSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-------cH---HHHHHHh
Confidence 346899999999999999999963 33322 234556543 34444444433211 01 1111112
Q ss_pred cCCcEEEEEeCCCCh---HhHH----Hhhh--cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVLE----QLIF--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~~----~l~~--~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
. +-=+|||||+... +.|+ .+.. ...|..|||||+..... ...-+++|+..+.+.-..+
T Consensus 376 ~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 R-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred h-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 2347899999743 2222 1111 12367788888764211 2345789999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+.+++-...- ...+++..-|++++.+..-.+
T Consensus 455 L~kka~~r~l---~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQL---NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCC---CCCHHHHHHHHHhccCCHHHH
Confidence 9888743321 112457777777777654433
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.25 E-value=0.0037 Score=69.07 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccccc-CCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...+.|+|.+|+|||.||+++++. +.... ...+++++. .++...+...+... .. ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~---~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM---EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH---HHHHHHH
Confidence 356899999999999999999964 33332 344556543 33444444444221 11 1122222
Q ss_pred cCCcEEEEEeCCCChH---hH-HHhhh-----cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSLA---VL-EQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~~---~~-~~l~~-----~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
. +.-+|||||++... .+ +.+.. ...|..+|+||...... .....+++++.+.++-..+
T Consensus 198 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 R-SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred H-hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 2 23488999997431 11 11211 12366788887643211 1224688999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+.+.+-.... ...+++...|++.+.|.+-.+
T Consensus 277 l~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGL---ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHH
Confidence 9887643221 122457788888888766543
No 151
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.0011 Score=61.07 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=27.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (830)
..+.|+|++|+||||+|+.++.. ..... ..++++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~-~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPG-GGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCC-CCEEEECCEEc
Confidence 57899999999999999999853 32222 13445555543
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0083 Score=68.86 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=96.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc---CCc---------------eEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNR---------------ILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~---------------~~wv~v 244 (830)
..++|.+.-+..+.+.+....-...+-++|+.|+||||+|+.+.+.-.-.... +|+ ++.++.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~ 95 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDG 95 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeec
Confidence 35689888888888888654445677899999999999999887431110100 000 111111
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtr 318 (830)
.....++++ +.+...+... -..+++-++|+|+++.. ...+.|.. .. +.+.+|++|.
T Consensus 96 ~s~~~v~~i-r~l~~~~~~~-----------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 96 ASNTGVDDI-RELRENVKYL-----------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCccCHHHH-HHHHHHHHhc-----------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 111222222 1222221100 01245567889999854 34444443 22 3556665553
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch-HHHHHH
Q 003321 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP-LALKVI 379 (830)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 379 (830)
. ..+. .....+++..++.++....+...+-..+ . ...++....|++.++|.. .|+..+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3222 2345678888998888777765442221 1 122456788889998865 344444
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=8.5e-06 Score=89.49 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=70.4
Q ss_pred cceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh-hcCCCCCcEeccc
Q 003321 671 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNIS 749 (830)
Q Consensus 671 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~L~ 749 (830)
|...+.+.| .+..+..++.-++.|+.|+|+.|+ ..... .+..|++|++|+|+.| .+..+|.- ...+ .|+.|.|+
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 334444443 355555566666777777777765 33332 5666777777777763 44445431 1122 37777776
Q ss_pred cccccCcchhhhccCCCCcEEeccCccCCccCC--ccccccccCceeecCchhhh
Q 003321 750 QCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEEDVSW 802 (830)
Q Consensus 750 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~l~~~~~~~~ 802 (830)
+ +.++++ .++.+|.+|+.|++++|- +.... .-++.|..|+.|.+.+|.-+
T Consensus 241 n-N~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 N-NALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred c-cHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6 345555 346677777777777765 22222 12456666777777766444
No 154
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=1.3e-05 Score=88.04 Aligned_cols=109 Identities=26% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchh-cCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPAD-IGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
.++.|+.|+|++|+ ..... .+..|++|++|||+.|. +..+|.- ...+ +|+.|++++| .++.+ .++.+|.+|+.
T Consensus 185 ll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 46788888888875 33333 57788899999999865 6666632 2223 4899999885 45555 35788899999
Q ss_pred eccccccccC--cchhhhccCCCCcEEeccCccCCccCCc
Q 003321 746 LNISQCVSLS--CLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 746 L~L~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
||+++|.... .+ .-+..|..|+.|+|.||+ +..-|.
T Consensus 259 LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP-l~c~p~ 296 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP-LCCAPW 296 (1096)
T ss_pred cchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc-cccCHH
Confidence 9999853322 22 225677889999999998 555554
No 155
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.23 E-value=0.04 Score=65.41 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred CCcccccccchhhHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 180 LGNLMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
..+...+|.+.-++++.++|.. .....++.++|++|+||||+|+.++. .....| +-+..+...+..++.
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~----~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY----VRMALGGVRDEAEIR 392 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE----EEEEcCCCCCHHHhc
Confidence 3455679999999999988852 12456899999999999999999984 333333 123444433333221
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChHh------HHHhh---hc----------------CC
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLAV------LEQLI---FR----------------VP 309 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~------~~~l~---~~----------------~~ 309 (830)
.. .....+.....+...+.......-+++||.++.... ...+. .. ..
T Consensus 393 g~--------~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 393 GH--------RRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred cc--------hhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 11 100000111111111222222345788999974210 12222 11 12
Q ss_pred CceEEEEecccccc----cccceEEccCCCHHHHHHHHHHHh
Q 003321 310 GCKTLVVSRFKFST----VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 310 gs~iivTtr~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
+.-+|.|+....+. ....++++.+++.+|-.++.+++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 33334444333221 223578899999999988887765
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.028 Score=59.18 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=101.2
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccc-------------ccccCCceEEEEecCCCCH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV-------------TSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~-------------~~~F~~~~~wv~v~~~~~~ 250 (830)
.++|.+..++.+.+.+..+.-....-++|+.|+||+++|..+.+.--- ...+++ +.|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 458888888888888875444579999999999999999877532100 112222 124321100000
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhhh---cCCCceEEEEeccc
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVPGCKTLVVSRFK 320 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~---~~~gs~iivTtr~~ 320 (830)
..+-..-++..+........-..+..+...+.+ .+++-++|+|+++.. ...+.++. .-|.+.+|++|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 000000001100000000001112222222222 456778999998743 34444443 33455566555443
Q ss_pred c-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 321 F-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 321 ~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
. +. .....+++.+++.++..+.+........ .+.....++..++|.|..+...
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 2 21 3456889999999999999987642111 1112367899999999766543
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.22 E-value=0.0064 Score=63.22 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=64.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCC
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGS 286 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~k 286 (830)
-+.++|++|+||||+|+.++....-........ ++.++. .++ ...+.+.. .......++. -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~-~v~v~~----~~l----~~~~~g~~-------~~~~~~~~~~--a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGH-LVSVTR----DDL----VGQYIGHT-------APKTKEILKR--AM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccce-EEEecH----HHH----hHhhcccc-------hHHHHHHHHH--cc
Confidence 588999999999999987763211111111112 344442 122 22221211 0111122222 23
Q ss_pred cEEEEEeCCCCh-----------HhHHHhhh---c-CCCceEEEEecccccc-----------cccceEEccCCCHHHHH
Q 003321 287 RCLVVLDDVWSL-----------AVLEQLIF---R-VPGCKTLVVSRFKFST-----------VLNDTYEVELLREDESL 340 (830)
Q Consensus 287 r~LlVlDdv~~~-----------~~~~~l~~---~-~~gs~iivTtr~~~~~-----------~~~~~~~l~~L~~~e~~ 340 (830)
.-+|+||++... +.++.+.. . ..+.+||+++...... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358889999732 22233322 2 2355666665432111 22457899999999999
Q ss_pred HHHHHHh
Q 003321 341 SLFCYSA 347 (830)
Q Consensus 341 ~Lf~~~a 347 (830)
.++.+.+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988765
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.019 Score=60.75 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCCC--hHhHHHhhh---c-CCCceEEEEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCC
Q 003321 285 GSRCLVVLDDVWS--LAVLEQLIF---R-VPGCKTLVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTI 353 (830)
Q Consensus 285 ~kr~LlVlDdv~~--~~~~~~l~~---~-~~gs~iivTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 353 (830)
+++-.+|+|+++. .+..+.++. . -+++.+|+||.+.... .....+.+.+++.+++.+.+.... +.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 3344556799984 344555543 2 2367777777665422 234678999999999998887653 11
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 354 PPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 354 ~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
..++.+..++..++|.|+.+..+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567889999999866544
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.20 E-value=0.0042 Score=67.50 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=90.1
Q ss_pred cccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+.|.+..++++.+.+.. . ...+-|.++|++|.|||++|+.+++. ....| +.+..+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f----i~i~~s------ 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF----IRVVGS------ 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE----EEEehH------
Confidence 567888888888776631 1 34677899999999999999999963 22222 122111
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------H---hHHHhhh---c---C
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------A---VLEQLIF---R---V 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~---~~~~l~~---~---~ 308 (830)
.+..... +. ....+...+.. ....+.+|++|+++.. + .+..+.. + .
T Consensus 214 ~l~~k~~----ge-------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EFVQKYL----GE-------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHHHHhc----ch-------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111110 00 01111122221 2457889999998632 0 1222222 1 1
Q ss_pred CCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 309 PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 309 ~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
.+..||+||...... ..+..++++..+.++-.++|..+.-... ...+ -...++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~d---vd~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEE---VDLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcc---cCHHHHHHHcCCCC
Confidence 355677777644321 2345688999999998888886653222 1111 12455666666653
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.021 Score=63.24 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=82.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
..-+.|+|++|+|||+||+++++. +... ...+++++. ..+...+...+... .. .. ++..-
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~-~~~v~yi~~------~~f~~~~~~~l~~~-------~~---~~-f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRES-GGKILYVRS------ELFTEHLVSAIRSG-------EM---QR-FRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHc-CCCEEEeeH------HHHHHHHHHHHhcc-------hH---HH-HHHHc
Confidence 356889999999999999999964 2222 234555543 33444444443211 01 11 11112
Q ss_pred CCcEEEEEeCCCChHh----HHHhh---h--cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHHH
Q 003321 285 GSRCLVVLDDVWSLAV----LEQLI---F--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (830)
Q Consensus 285 ~kr~LlVlDdv~~~~~----~~~l~---~--~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (830)
...-+|++||+..... -+.+. . ...|..||+||...... ..+-.+++++++.++-..++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3445888999875311 11111 1 12467788888653211 12357889999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 344 CYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 344 ~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
.+.+-...- ...+++..-|++.+.|.
T Consensus 281 ~~k~~~~~~---~l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI---RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCC
Confidence 887633221 12244666677766643
No 161
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.00038 Score=49.09 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=18.0
Q ss_pred CCcEeccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 742 CLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 742 ~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
+|++|++++| .++.+|..+++|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 4555555553 444555555566666666666654
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.17 E-value=0.0014 Score=67.30 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=54.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcC
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 285 (830)
..+.++|.+|+|||.||.++++. +..+ ...++++++ .+++..+........ ........+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~-~~~v~~~~~------~~ll~~i~~~~~~~~-------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEK-GVPVIFVNF------PQLLNRIKSTYKSSG-------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEEH------HHHHHHHHHHHhccc-------cccHHHHHHHhcC
Confidence 45889999999999999999964 3222 234456543 345555544332111 0111123333433
Q ss_pred CcEEEEEeCCCC--hHhHH-----Hhhhc--CCCceEEEEeccc
Q 003321 286 SRCLVVLDDVWS--LAVLE-----QLIFR--VPGCKTLVVSRFK 320 (830)
Q Consensus 286 kr~LlVlDdv~~--~~~~~-----~l~~~--~~gs~iivTtr~~ 320 (830)
-. ||||||+.. ...|. .+... ..|..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33 899999942 22222 22221 2467788888743
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.0019 Score=77.50 Aligned_cols=146 Identities=11% Similarity=0.074 Sum_probs=81.3
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccc------cCCceEEEEecCCCCHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY------FNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.++||+.++.++++.|... ...-+.++|.+|+|||++|+.+... +... ...+++.+.++.-..
T Consensus 179 ~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~l~a-------- 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGALVA-------- 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhhhhh--------
Confidence 5799999999999998753 3445569999999999999998843 2111 123343443332100
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH----------hHHHhhhcC-CC-ceEEEEeccccc-
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA----------VLEQLIFRV-PG-CKTLVVSRFKFS- 322 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~----------~~~~l~~~~-~g-s~iivTtr~~~~- 322 (830)
+.. ...+....++..+..+ .+++.+|++|+++... .-+-+.+.. .| -++|-+|.....
T Consensus 248 -----g~~--~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 -----GAK--YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred -----ccc--hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 000 0001111223333322 3578999999997542 112222222 23 345544443321
Q ss_pred -------c--cccceEEccCCCHHHHHHHHHHHh
Q 003321 323 -------T--VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 323 -------~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
+ .....+.+...+.++...++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 222356777788899988886543
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.15 E-value=0.00087 Score=72.33 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=64.2
Q ss_pred ccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCC
Q 003321 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGC 264 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 264 (830)
.++.+...+.+...|. ..+.|.++|++|+|||++|+.+++.......|. ++.||.++...+-.++...+ ...
T Consensus 177 ~~i~e~~le~l~~~L~---~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~-~v~~VtFHpsySYeDFI~G~----rP~ 248 (459)
T PRK11331 177 LFIPETTIETILKRLT---IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ-RVNMVQFHQSYSYEDFIQGY----RPN 248 (459)
T ss_pred ccCCHHHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccc-eeeEEeecccccHHHHhccc----CCC
Confidence 4667777788877775 345788899999999999999986543334454 56699999887766554322 000
Q ss_pred CCCCCCCCcccch-HHHHhh--cCCcEEEEEeCCCCh
Q 003321 265 DSMEPNYVIPHWN-LQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
..+.......+. ...... .++++.||+|++...
T Consensus 249 -~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 -GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000000001111 111111 357899999999854
No 165
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.0068 Score=66.18 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=69.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCC
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGS 286 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~k 286 (830)
++.|.|+-++||||+++.+.. ...+. +++++..+......-+.+..... .+....+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~----~iy~~~~d~~~~~~~l~d~~~~~------------------~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE----IIYINFDDLRLDRIELLDLLRAY------------------IELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc----eEEEEecchhcchhhHHHHHHHH------------------HHhhccC
Confidence 999999999999999977663 22222 33444433211111111111111 1111227
Q ss_pred cEEEEEeCCCChHhHHHhhh----cCCCceEEEEecccccc---------cccceEEccCCCHHHHHHHH
Q 003321 287 RCLVVLDDVWSLAVLEQLIF----RVPGCKTLVVSRFKFST---------VLNDTYEVELLREDESLSLF 343 (830)
Q Consensus 287 r~LlVlDdv~~~~~~~~l~~----~~~gs~iivTtr~~~~~---------~~~~~~~l~~L~~~e~~~Lf 343 (830)
+.+++||.|+....|..... .++. +|++|+.+.... +....+++.||+..|...+-
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 88999999999988876654 3344 788887765432 34567899999999887654
No 166
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.011 Score=62.81 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=103.1
Q ss_pred CCcccccccchhhHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHhcccccccccCC-ceEEEEecCCCCHHHHHH
Q 003321 180 LGNLMGIGMALGKNKVKEMVIGR---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN-RILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~~wv~v~~~~~~~~l~~ 255 (830)
..+.-++||+.+...+.+++... +..+-+-|.|-+|.|||.+...++.+ ....... .+.+++.-.-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHH
Confidence 34556799999999999999643 56778899999999999999999954 2222211 222555444456778888
Q ss_pred HHHHhhcCCCCCCCCCCcccchHHHHhhcC--CcEEEEEeCCCChHh-----HHHh--hhcCCCceEEEEeccccc----
Q 003321 256 KVWGFVSGCDSMEPNYVIPHWNLQIQSKLG--SRCLVVLDDVWSLAV-----LEQL--IFRVPGCKTLVVSRFKFS---- 322 (830)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~--kr~LlVlDdv~~~~~-----~~~l--~~~~~gs~iivTtr~~~~---- 322 (830)
.|...+.......+. ..+......++..+ .-+|+|||.++.... +-.+ .+..|++++|+.---...
T Consensus 225 kI~~~~~q~~~s~~~-~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGT-GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHhcCCch-hHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 888777332222211 23333333333322 368999999975421 1111 124578887765321111
Q ss_pred ----------ccccceEEccCCCHHHHHHHHHHHhc
Q 003321 323 ----------TVLNDTYEVELLREDESLSLFCYSAF 348 (830)
Q Consensus 323 ----------~~~~~~~~l~~L~~~e~~~Lf~~~af 348 (830)
.........++-+.++-.++|..+.-
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 12335677788899999999987763
No 167
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.023 Score=55.84 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=102.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec-CCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS-QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (830)
++-+++.++|.-|.|||.+++++..... +..+.-+.+. +..+...+...+...+............++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 5677999999999999999995542211 2223223333 345566777778777765221111111222222222
Q ss_pred hh--cCCc-EEEEEeCCCCh--HhHHHhhh---c-CCCc---eEEEEecccc------cc-----cccce-EEccCCCHH
Q 003321 282 SK--LGSR-CLVVLDDVWSL--AVLEQLIF---R-VPGC---KTLVVSRFKF------ST-----VLNDT-YEVELLRED 337 (830)
Q Consensus 282 ~l--~~kr-~LlVlDdv~~~--~~~~~l~~---~-~~gs---~iivTtr~~~------~~-----~~~~~-~~l~~L~~~ 337 (830)
.+ +++| ..+++|+..+. +.++.++- . ..++ +|+..-.-+. .. ....+ |++++++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 22 6777 99999998753 34444432 1 1111 2333322211 11 11123 899999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 338 ESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 338 e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
+...++..+.-+...+++-..++....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88888877654444444444567889999999999999987764
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.10 E-value=0.0017 Score=77.99 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=36.8
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-cCCeEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999997543 334569999999999999998853
No 169
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.00056 Score=63.03 Aligned_cols=84 Identities=24% Similarity=0.254 Sum_probs=47.8
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCc
Q 003321 208 LGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSR 287 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr 287 (830)
|.++|++|+|||+||+.++. .. ...++-+.++...+..++....--. .+. .......+... -.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~----~~~~~~~l~~a----~~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NGQ----FEFKDGPLVRA----MRKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TTT----TCEEE-CCCTT----HHEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-ccc----ccccccccccc----ccce
Confidence 67899999999999999984 33 3344457777777777655322111 000 00000001111 1278
Q ss_pred EEEEEeCCC--ChHhHHHhhh
Q 003321 288 CLVVLDDVW--SLAVLEQLIF 306 (830)
Q Consensus 288 ~LlVlDdv~--~~~~~~~l~~ 306 (830)
.++|||++. +.+.+..+..
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHH
T ss_pred eEEEECCcccCCHHHHHHHHH
Confidence 999999998 4455555544
No 170
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.00036 Score=66.27 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=26.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccc-cccCCceEE
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVT-SYFNNRILF 241 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~-~~F~~~~~w 241 (830)
+-|.|+|++|+||||||+.+++...+. -+|+. ++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~-l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch-hhc
Confidence 358999999999999999999764443 44553 344
No 171
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.0022 Score=67.58 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-ccCCceEEEEecCC-CCHHHHHHHHHHhhcCCCCCCCC
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEPN 270 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~ 270 (830)
.++++.+..-..-.-+.|+|.+|+|||||++.+.+. +.. +-+..++|+.+.+. ..+.++.+.+...+.........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 446777654334456799999999999999998853 222 22333467777764 46788888887765543211111
Q ss_pred CC-cc---cchHHHHhh--cCCcEEEEEeCCCCh
Q 003321 271 YV-IP---HWNLQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 271 ~~-~~---~~~~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
.. .. ......+.+ .+++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 00 11 111222222 699999999998643
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0016 Score=72.32 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=69.1
Q ss_pred CcccccccchhhHHHHHHHh-----cCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHH
Q 003321 181 GNLMGIGMALGKNKVKEMVI-----GRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~-----~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
.+..-+|.+.-+++|.+++- .+-+-++++.+|++|+|||++|+.++ ....+.| |-++|+.-.++.+|.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA--~ALnRkF----fRfSvGG~tDvAeIk- 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIA--RALNRKF----FRFSVGGMTDVAEIK- 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHH--HHhCCce----EEEeccccccHHhhc-
Confidence 34556899999999999983 22466899999999999999999999 4555555 345677666665542
Q ss_pred HHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC
Q 003321 256 KVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS 297 (830)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 297 (830)
+....--......+-..++..+-.+=|+.||.|+.
T Consensus 482 -------GHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 -------GHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred -------ccceeeeccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 22211122223333344444556677899999974
No 173
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.02 E-value=0.00051 Score=48.44 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=27.5
Q ss_pred cccCeeeecccccCccCCCccccCCCceEEeeecccc
Q 003321 618 TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKIN 654 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 654 (830)
++|++|++++|+++.+|..+..|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4688888888888888877888888888888776544
No 174
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.019 Score=59.10 Aligned_cols=174 Identities=15% Similarity=0.131 Sum_probs=100.7
Q ss_pred cccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+=|-++.+++|.+.+-- . +.++=|-++|++|.|||-||++|+|+ ....| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF------IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF------IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE------EEeccH----
Confidence 445677777777777521 1 56788899999999999999999964 33333 333322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------H---hHHHhhh---cC---
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------A---VLEQLIF---RV--- 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~---~~~~l~~---~~--- 308 (830)
++.++.+ +. .....+..++. .....+.|++|.++.. + .+-+|+. +|
T Consensus 220 ElVqKYi----GE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ELVQKYI----GE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHHHh----cc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 2222211 11 11111222222 1567899999999742 1 1222222 33
Q ss_pred CCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch----HHH
Q 003321 309 PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP----LAL 376 (830)
Q Consensus 309 ~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP----Lai 376 (830)
..-|||..|-...+. ..+..++++..+.+.-.++|+-|+-.-+-...- -.+.+++.|.|.- -|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv----d~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV----DLELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc----CHHHHHHhcCCCchHHHHHH
Confidence 256888777554432 345778999778887888888776433322221 2456677776654 445
Q ss_pred HHHHHHhc
Q 003321 377 KVIGASLR 384 (830)
Q Consensus 377 ~~~~~~L~ 384 (830)
.+=|+++.
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566553
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.97 E-value=0.0052 Score=60.57 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=35.4
Q ss_pred ccccccchhhHHHHHHH---hcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMV---IGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L---~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|.+..++.+++-. ....+..-+-+||..|.|||++++++.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 45688888887776543 23355667888999999999999999853
No 176
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.97 E-value=0.038 Score=59.03 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=111.8
Q ss_pred cchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHH-HHHhcccccccccCCceEEEEecC---CCCHHHHHHHHHHhh--
Q 003321 188 MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLA-LEVCRDHQVTSYFNNRILFLTVSQ---SPNVEQLRAKVWGFV-- 261 (830)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~~~~wv~v~~---~~~~~~l~~~i~~~l-- 261 (830)
|.+..++|..||.+. .-..|.|.||-|.||+.|+ .++..+.+. ++.++..+ ..+...+...++.++
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r~~-------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDRKN-------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCCCC-------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 456788999999864 4459999999999999999 777754322 22333321 122233333333332
Q ss_pred ---------------------cCCCCCCCCCCcccchHH------------------------------HHhhcCCcEEE
Q 003321 262 ---------------------SGCDSMEPNYVIPHWNLQ------------------------------IQSKLGSRCLV 290 (830)
Q Consensus 262 ---------------------~~~~~~~~~~~~~~~~~~------------------------------~~~l~~kr~Ll 290 (830)
.|....-......+++.+ ++....+|=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 222111111111122111 11112346789
Q ss_pred EEeCCCCh-----------HhHHHhhhcCCCceEEEEecccccc---------cccceEEccCCCHHHHHHHHHHHhcCC
Q 003321 291 VLDDVWSL-----------AVLEQLIFRVPGCKTLVVSRFKFST---------VLNDTYEVELLREDESLSLFCYSAFGQ 350 (830)
Q Consensus 291 VlDdv~~~-----------~~~~~l~~~~~gs~iivTtr~~~~~---------~~~~~~~l~~L~~~e~~~Lf~~~af~~ 350 (830)
|+|+.... .+|....-...--+||++|-+.... .....+.+...+++.|.++...+.-..
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 99998632 2344433344456888888876543 234677899999999999998876432
Q ss_pred CCC-------------CC----chhHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 003321 351 KTI-------------PP----SANENLVKQIVKKCKGLPLALKVIGASLRE 385 (830)
Q Consensus 351 ~~~-------------~~----~~~~~~~~~i~~~c~GlPLai~~~~~~L~~ 385 (830)
... .. .....-....++..||=-.-+..+++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 110 00 112334567888889999999999988874
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=96.96 E-value=0.0049 Score=71.00 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=88.6
Q ss_pred cccccchhhHHHHHHH---hcC--------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 184 MGIGMALGKNKVKEMV---IGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
.++|.+..++++.+++ ... ...+-|.++|++|+|||+||+.+++.. ... ++.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p------~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP------FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC------eeeccHH----H
Confidence 4567777666665554 211 224568999999999999999998532 111 2333211 1
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh----------------HhHHHhhh---c---CC
Q 003321 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL----------------AVLEQLIF---R---VP 309 (830)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~----------------~~~~~l~~---~---~~ 309 (830)
+..... +. ........+.. ..+.+++|+|||++.. ..+..+.. + ..
T Consensus 252 f~~~~~----g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FVEMFV----GV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHhh----hh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111100 00 00111222222 2567899999999632 12333332 1 12
Q ss_pred CceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCC
Q 003321 310 GCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG 371 (830)
Q Consensus 310 gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~G 371 (830)
+..||.||..... + ..+..+.++..+.++-.++++.++-.... ........+++.+.|
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 4455555544321 1 23467888999999999999887643211 112345678888877
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.94 E-value=0.0036 Score=75.50 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=81.0
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccc------cCCceEEEEecCCCCHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY------FNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.++||+.++.+++..|... ...-+.++|++|+|||++|+.+... +... ....++.+.++. +.
T Consensus 174 ~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~~------l~--- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMGA------LI--- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHHH------Hh---
Confidence 5799999999999988643 3445568999999999999998843 2211 122333332221 10
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH----------hHHHhhhcC-CC-ceEEEEeccccc-
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA----------VLEQLIFRV-PG-CKTLVVSRFKFS- 322 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~----------~~~~l~~~~-~g-s~iivTtr~~~~- 322 (830)
. +... ..+....++..+..+ .+++.+|++|++.... .-+.+++.. .| -++|-+|.....
T Consensus 242 -a---~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 -A---GAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred -h---cchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 0 0000 001111223333333 2468999999998431 122222221 22 344444433211
Q ss_pred -------c--cccceEEccCCCHHHHHHHHHHH
Q 003321 323 -------T--VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 323 -------~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
+ .....+.++..+.++...++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 1 22356789999999999988754
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.93 E-value=0.003 Score=74.13 Aligned_cols=148 Identities=10% Similarity=0.158 Sum_probs=80.1
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---ccccccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
.++||+.++.++++.|..... .-+.++|++|+|||++|+.++..- .+...+....+|. + +...+ +
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~-~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~~l----l-- 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIGSL----L-- 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCC-CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHHHH----h--
Confidence 579999999999998875433 344689999999999999988421 1111122222231 1 11111 1
Q ss_pred hcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh----------HhH-HHhhhcC-CC-ceEEEEecccc-----
Q 003321 261 VSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------AVL-EQLIFRV-PG-CKTLVVSRFKF----- 321 (830)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~----------~~~-~~l~~~~-~g-s~iivTtr~~~----- 321 (830)
.+... ..+....++..+..+ ..++.+|++|++... ... +-+.+.. .| -++|-+|....
T Consensus 255 -aG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 255 -AGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred -cccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHh
Confidence 01100 001111222233323 345779999999742 111 1122211 23 34444443221
Q ss_pred ---cc--cccceEEccCCCHHHHHHHHHHH
Q 003321 322 ---ST--VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 322 ---~~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
.+ .....++++.++.++..+++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 11 22357899999999999998754
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.87 E-value=0.00013 Score=63.86 Aligned_cols=109 Identities=21% Similarity=0.347 Sum_probs=74.0
Q ss_pred ccceeccccccccCcccc---ccCCCCCCCEEEeeCcCCCCccchhcC-CCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 670 CLTELTFDHCDDLMKLPP---SICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 670 ~L~~L~l~~~~~l~~lp~---~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
.+..++|++|. +..++. .+....+|...+|++|. ++.+|+.+. .++.+..|++++ +.+..+|..+..++.|+.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhh
Confidence 35567777773 343443 34455666777888854 677776664 345778888877 456778888888888888
Q ss_pred eccccccccCcchhhhccCCCCcEEeccCccCCccCCc
Q 003321 746 LNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
|+++. +.+...|..+..|.+|-.|+..+|. ...+|-
T Consensus 105 lNl~~-N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 105 LNLRF-NPLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred ccccc-CccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 88887 4566777777777888778777766 455553
No 181
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.87 E-value=0.0066 Score=68.86 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=86.1
Q ss_pred cccccchhhHHHHHHHh---c--------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 184 MGIGMALGKNKVKEMVI---G--------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~---~--------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
.++|.+..++++.+++. . ....+-+.++|++|+|||++|+.+++.. ... ++.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~------~~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP------FFSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC------eeeccH----HH
Confidence 45777777666665542 1 1234458899999999999999998532 111 222221 11
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCChH----------------hHHHhhh---cC---C
Q 003321 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA----------------VLEQLIF---RV---P 309 (830)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~~----------------~~~~l~~---~~---~ 309 (830)
+.... .+. ....+...++. ....+.+|+||+++... .+..+.. +. .
T Consensus 124 ~~~~~----~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FVEMF----VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHH----hcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11111 000 01111222222 23567899999996421 1222221 11 2
Q ss_pred CceEEEEecccc-c--c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 310 GCKTLVVSRFKF-S--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 310 gs~iivTtr~~~-~--~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
+..||.||.... + + ..+..++++..+.++-.++|..+.-.... .. ......+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-AP---DVDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Cc---chhHHHHHHhCCCC
Confidence 334555554332 1 1 23467889999999999999877633221 11 11345788888774
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.033 Score=59.77 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
....+.|||..|.|||-|++++.|. ........++.+++ .......++..+.... . ....+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~-~~~~~~~a~v~y~~------se~f~~~~v~a~~~~~-------~---~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE-ALANGPNARVVYLT------SEDFTNDFVKALRDNE-------M---EKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH-HHhhCCCceEEecc------HHHHHHHHHHHHHhhh-------H---HHHHHhh
Confidence 4679999999999999999999963 22333334444432 2334444444332211 1 1111111
Q ss_pred cCCcEEEEEeCCCCh---HhHHH-hhh---c--CCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSL---AVLEQ-LIF---R--VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~~~~-l~~---~--~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
.-=++++||++.. +.|+. +.. . ..|-.||+|++..... ..+-++++.+++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 3338899999842 12221 111 1 1244888888665432 2346799999999999999
Q ss_pred HHHHhcC
Q 003321 343 FCYSAFG 349 (830)
Q Consensus 343 f~~~af~ 349 (830)
+.+.+-.
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9886643
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.79 E-value=0.028 Score=53.08 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---ccc---------------cccCCceEEEEecCC--
Q 003321 188 MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVT---------------SYFNNRILFLTVSQS-- 247 (830)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~---------------~~F~~~~~wv~v~~~-- 247 (830)
-+...+.+.+++..+.-...+-++|+.|+||+|+|..+.+.- ... ...++ +.|+.-...
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 80 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKK 80 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSS
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccc
Confidence 344456666666544445678999999999999999876421 111 12232 235543332
Q ss_pred -CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh----cCCCceEEEEeccc
Q 003321 248 -PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSRFK 320 (830)
Q Consensus 248 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtr~~ 320 (830)
..++++. .+...+.... ..+++=.+|+|+++. .+....|+. ..+++.+|++|++.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3455444 4444432211 124566889999985 345555553 23478888888876
Q ss_pred c
Q 003321 321 F 321 (830)
Q Consensus 321 ~ 321 (830)
.
T Consensus 143 ~ 143 (162)
T PF13177_consen 143 S 143 (162)
T ss_dssp G
T ss_pred H
Confidence 5
No 184
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.79 E-value=0.0074 Score=66.11 Aligned_cols=142 Identities=19% Similarity=0.144 Sum_probs=80.5
Q ss_pred cccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+.|.+..++++.+.+.- . ...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f------i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF------LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE------EEEecc----
Confidence 457888888888877631 1 34566889999999999999999963 33333 222211
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCChH----------------hHHHhhh---c---C
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA----------------VLEQLIF---R---V 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~~----------------~~~~l~~---~---~ 308 (830)
++... ..+. ........+.. ..+.+.+|+||+++... .+..+.. + .
T Consensus 252 eL~~k----~~Ge-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELIQK----YLGD-------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhhhh----hcch-------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11110 0000 00111111111 13567888999875310 1112221 1 2
Q ss_pred CCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhc
Q 003321 309 PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAF 348 (830)
Q Consensus 309 ~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af 348 (830)
.+..||+||...... ..+..++++..+.++-.++|..+.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 255777777643321 2345789999999999999987763
No 185
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.76 E-value=0.0017 Score=59.05 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999964
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.069 Score=56.08 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=56.9
Q ss_pred cCCcEEEEEeCCCCh--HhHHHhhh----cCCCceEEEEeccccc-c----cccceEEccCCCHHHHHHHHHHHhcCCCC
Q 003321 284 LGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKFS-T----VLNDTYEVELLREDESLSLFCYSAFGQKT 352 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtr~~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~ 352 (830)
.+++-++|+|+++.. ..-+.++. .-+++.+|++|..... . .-...+.+.+++.+++.+.+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 356678999999853 33333433 2346777777765432 2 234578889999999988886531
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 353 IPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 353 ~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
. .+..+..++..++|.|+.+..+.
T Consensus 186 ~----~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V----SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C----ChHHHHHHHHHcCCCHHHHHHHh
Confidence 1 12346778999999998765443
No 187
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.75 E-value=0.00021 Score=79.13 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=118.1
Q ss_pred CCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCC
Q 003321 612 SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG 691 (830)
Q Consensus 612 ~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~ 691 (830)
..+..+++|+.|++.+|.+..+...+..+.+|++|+++.|.+...... ..++.|+.|++.+|. +..++ .+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l------~~l~~L~~L~l~~N~-i~~~~-~~~~ 160 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL------STLTLLKELNLSGNL-ISDIS-GLES 160 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch------hhccchhhheeccCc-chhcc-CCcc
Confidence 346788999999999999998887678899999999998887653322 236668889999874 44443 3556
Q ss_pred CCCCCEEEeeCcCCCCccchh-cCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCC--Cc
Q 003321 692 LQSLKNLSVTNCHSLQELPAD-IGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIR--LE 768 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~--L~ 768 (830)
+++|+.+++++|. +..+... +..+.+|+.+.+.+|.... + ..+..+..+..+++..+ .+..+ .++..+.. |+
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n-~i~~~-~~l~~~~~~~L~ 235 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDN-KISKL-EGLNELVMLHLR 235 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccc-cceec-cCcccchhHHHH
Confidence 8899999999876 3444432 4678888888888764332 2 22334444555555553 23322 12333343 89
Q ss_pred EEeccCccCCccCCccccccccCceeecCch
Q 003321 769 KIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 769 ~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
.+++.+++ +...+..+..+..+..+++.++
T Consensus 236 ~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 236 ELYLSGNR-ISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHhcccCc-cccccccccccccccccchhhc
Confidence 99999998 6666566777777777776655
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.73 E-value=0.02 Score=68.11 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=36.1
Q ss_pred cccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|.+..++.+.+.+... ....++.++|++|+|||+||+.++.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 345688888888888887521 2345788999999999999999984
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.69 E-value=0.038 Score=56.89 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=28.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
.-|.+.|++|+|||++|+.+.. ... ..+..++.....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC----CCEEEEeCCccCCHHHHh
Confidence 3556899999999999999984 222 233355555554444443
No 190
>PRK07261 topology modulation protein; Provisional
Probab=96.69 E-value=0.0031 Score=60.17 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.64 E-value=0.0028 Score=62.95 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEE
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT 243 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~ 243 (830)
.-.++|+|.+|.|||||+..+. ......|. .+++++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL--~~~~~~f~-~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLL--YYLRHKFD-HIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHH--HhhcccCC-EEEEEe
Confidence 3467899999999999999998 44677884 454553
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0014 Score=58.73 Aligned_cols=21 Identities=52% Similarity=0.657 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 193
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.64 E-value=0.0039 Score=63.24 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC-HHHHHHHHHH
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN-VEQLRAKVWG 259 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~-~~~l~~~i~~ 259 (830)
.-.-++|+|.+|+||||||+.+++ .++.+|+..++++-+++... +.++.+.+.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 445789999999999999999995 45556777777777776543 4555555543
No 194
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.58 E-value=0.0002 Score=62.69 Aligned_cols=79 Identities=23% Similarity=0.411 Sum_probs=44.4
Q ss_pred CccceeccccccccCccccccC-CCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEec
Q 003321 669 PCLTELTFDHCDDLMKLPPSIC-GLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLN 747 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 747 (830)
.+|+..+|++| .+..+|+.+. .++.+++|++++|. +.++|..+..++.|+.|+++.|+ +...|.-+..|.+|-+|+
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence 34555566665 3455555544 33466666666543 56666666666666666666643 334455555566666665
Q ss_pred ccc
Q 003321 748 ISQ 750 (830)
Q Consensus 748 L~~ 750 (830)
..+
T Consensus 130 s~~ 132 (177)
T KOG4579|consen 130 SPE 132 (177)
T ss_pred CCC
Confidence 544
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.078 Score=56.51 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=75.9
Q ss_pred cchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-------------------ccCCceEEEEe-cCC
Q 003321 188 MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTV-SQS 247 (830)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v-~~~ 247 (830)
-+.-++.+.+.+..+.-....-++|+.|+||||+|+.+.+.---.. .+++.. ++.. +..
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~~~~~ 89 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAPDGQS 89 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecccccc
Confidence 4445566666665444566779999999999999998753211000 011111 2211 111
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh----cCCCceEEEEecccc
Q 003321 248 PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKF 321 (830)
Q Consensus 248 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtr~~~ 321 (830)
..++++. ++.+.+.... ..+++-.+|+|+++.. +..+.++. ..+++.+|++|....
T Consensus 90 i~id~ir-~l~~~~~~~~-----------------~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 90 IKKDQIR-YLKEEFSKSG-----------------VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred CCHHHHH-HHHHHHhhCC-----------------cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 2222222 1122211100 1244557889998743 33444443 234667777776543
Q ss_pred -cc----cccceEEccCCCHHHHHHHHHH
Q 003321 322 -ST----VLNDTYEVELLREDESLSLFCY 345 (830)
Q Consensus 322 -~~----~~~~~~~l~~L~~~e~~~Lf~~ 345 (830)
+. .....+++.+++.++..+.+..
T Consensus 152 ~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 QILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 21 3456789999999999888864
No 196
>PRK06526 transposase; Provisional
Probab=96.53 E-value=0.011 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...-+.++|++|+|||+||..+.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHH
Confidence 445689999999999999999985
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.51 E-value=0.0075 Score=61.90 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEe
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (830)
....+.++|.+|+|||.||.++++. +..+....+.++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 4567899999999999999999963 33321233456654
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.24 Score=52.05 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=89.8
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc-----ccc-------------ccccCCceEEEEec---CCCCH
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD-----HQV-------------TSYFNNRILFLTVS---QSPNV 250 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~-----~~~-------------~~~F~~~~~wv~v~---~~~~~ 250 (830)
.+++.+.+..+.-...+-+.|+.|+||+++|+.+..- ... .+..++ +.|+.-. +...+
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~v 90 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSITV 90 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCCH
Confidence 3555666654444568899999999999999987531 100 001111 1233221 11233
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh----cCCCceEEEEecccc-cc
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSRFKF-ST 323 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtr~~~-~~ 323 (830)
+++. .+.+.+.... ..+++=.+|+|+++. ....+.++. .-+++.+|++|.+.. +.
T Consensus 91 dqiR-~l~~~~~~~~-----------------~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 91 EQIR-QCNRLAQESS-----------------QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHHH-HHHHHHhhCc-----------------ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 3331 2222221110 134555788899884 345555554 234666666666543 22
Q ss_pred ----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 324 ----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 324 ----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
.....+.+.+++.++..+.+.... .. .+..++..++|.|+.+.-+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc------hHHHHHHHcCCCHHHHHHH
Confidence 334678999999999998886531 11 2356789999999977544
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0064 Score=67.94 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=56.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
.+-++.-++|++|+||||||..++.+ .-| .+.=+++|+..+...+-..|...+......+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY--sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY--SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc--eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 45689999999999999999999842 234 45688999999998888888777654332110
Q ss_pred hcCCcEEEEEeCCCCh
Q 003321 283 KLGSRCLVVLDDVWSL 298 (830)
Q Consensus 283 l~~kr~LlVlDdv~~~ 298 (830)
.+++.-||+|.++-.
T Consensus 385 -dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGA 399 (877)
T ss_pred -CCCcceEEEecccCC
Confidence 256778899999843
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.47 E-value=0.11 Score=58.08 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS- 282 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 282 (830)
..+-|-++|++|.|||.+|+.+.+. .. ...+-++.+. +.....+ .....+...++.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~----~~~~~l~~~~----------l~~~~vG-------ese~~l~~~f~~A 314 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQ----LPLLRLDVGK----------LFGGIVG-------ESESRMRQMIRIA 314 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hC----CCEEEEEhHH----------hcccccC-------hHHHHHHHHHHHH
Confidence 4567889999999999999999853 22 1122222221 1000000 001111122221
Q ss_pred hcCCcEEEEEeCCCChH--------------hHHHhh----hcCCCceEEEEeccccc---c-----cccceEEccCCCH
Q 003321 283 KLGSRCLVVLDDVWSLA--------------VLEQLI----FRVPGCKTLVVSRFKFS---T-----VLNDTYEVELLRE 336 (830)
Q Consensus 283 l~~kr~LlVlDdv~~~~--------------~~~~l~----~~~~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~ 336 (830)
....+++|++|+++... .+..+. ....+.-||.||..... + ..+..+.++..+.
T Consensus 315 ~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 315 EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 13578999999997320 111111 11123334445543321 1 2356788999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 337 DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 337 ~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
++-.++|..+.-........ ......+++.+.|.-
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 99999998776432211000 112456666666643
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.47 E-value=0.0079 Score=56.90 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=28.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (830)
++.|+|.+|+||||+|..+.... .. ....++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~-~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--AT-KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--Hh-cCCEEEEEECCcchH
Confidence 46899999999999999998532 22 334566777665543
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=96.47 E-value=0.0086 Score=61.29 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+.|+|++|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45677999999999999999975
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.46 E-value=0.0066 Score=58.20 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=64.8
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.+||-+..++.+.-+.. +.+.+-+.|.||+|+||||-+..+++ .-....+...+.-.+.|+...++-+...|-.....
T Consensus 28 dIVGNe~tv~rl~via~-~gnmP~liisGpPG~GKTTsi~~LAr-~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK-EGNMPNLIISGPPGTGKTTSILCLAR-ELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HhhCCHHHHHHHHHHHH-cCCCCceEeeCCCCCchhhHHHHHHH-HHhChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 45888777777654444 56788899999999999998887774 23445565666677788777766655554322211
Q ss_pred CCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh
Q 003321 264 CDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL 298 (830)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~ 298 (830)
.. .+ .++.-.+|||..++.
T Consensus 106 kv----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 106 KV----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred hc----------------cCCCCceeEEEeeccchh
Confidence 10 01 356668999999864
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.16 Score=53.57 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=55.4
Q ss_pred cCCcEEEEEeCCCCh--HhHHHhhh----cCCCceEEEEecccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCC
Q 003321 284 LGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKT 352 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~ 352 (830)
.+++=.+|+|+++.. +..+.++. .-+++.+|++|.... +. .....+.+.+++.++..+.+..... .
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~-- 181 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-A-- 181 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-c--
Confidence 356667889999843 44555543 234667777776543 22 2346789999999999988876531 1
Q ss_pred CCCchhHHHHHHHHHHcCCchHHH
Q 003321 353 IPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 353 ~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
....+...+..++|.|+.+
T Consensus 182 -----~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -----EISEILTALRINYGRPLLA 200 (325)
T ss_pred -----ChHHHHHHHHHcCCCHHHH
Confidence 1123567788999999644
No 205
>PRK12377 putative replication protein; Provisional
Probab=96.42 E-value=0.0098 Score=60.03 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
+...+.++|.+|+|||.||.++++. +.... ..+.++++. ++...+-....... .....++.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~--l~~~g-~~v~~i~~~------~l~~~l~~~~~~~~---------~~~~~l~~l 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNR--LLAKG-RSVIVVTVP------DVMSRLHESYDNGQ---------SGEKFLQEL 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHcC-CCeEEEEHH------HHHHHHHHHHhccc---------hHHHHHHHh
Confidence 3467899999999999999999964 32222 123455443 44444433321100 011222222
Q ss_pred cCCcEEEEEeCCC
Q 003321 284 LGSRCLVVLDDVW 296 (830)
Q Consensus 284 ~~kr~LlVlDdv~ 296 (830)
.+--||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 456799999994
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.35 E-value=0.0048 Score=64.89 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred cccccccchhhHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHhccc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR-----DDLSVLGICGIGGSGKTTLALEVCRDH 229 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~ 229 (830)
+..++|.++.++++++++... ...++++++|++|.||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 336899999999999998542 346899999999999999999998643
No 207
>PRK04132 replication factor C small subunit; Provisional
Probab=96.30 E-value=0.095 Score=61.95 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=91.5
Q ss_pred Ec--CCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcE
Q 003321 211 CG--IGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRC 288 (830)
Q Consensus 211 ~G--~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~ 288 (830)
-| |.++||||+|..++++. ..+.+...++-++.++..+.+.+...+ ..+....+.. ..+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~~~---------------~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIREKV-KEFARTKPIG---------------GASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCCcC---------------CCCCE
Confidence 37 78899999999999642 223344455678888766666554333 3322111100 12457
Q ss_pred EEEEeCCCCh--HhHHHhhh---cC-CCceEEEEecccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCch
Q 003321 289 LVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSA 357 (830)
Q Consensus 289 LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~ 357 (830)
++|||+++.. +..+.|+. .. ..+++|.+|.+.. +. .....+++.+++.++-...+...+-..+ .. .
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~--i 709 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE--L 709 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC--C
Confidence 9999999954 35555543 32 3567776665543 21 3346789999999988887776553222 11 1
Q ss_pred hHHHHHHHHHHcCCchHHHHH
Q 003321 358 NENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 358 ~~~~~~~i~~~c~GlPLai~~ 378 (830)
.++....|++.++|-+..+..
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHH
Confidence 245788999999998855443
No 208
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.30 E-value=0.0088 Score=60.68 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhccccccccc---CCceEEEEecCCCCHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..-.++.|+|.+|+|||+||.+++-.......+ ...++|++....++...+...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 456799999999999999999987322222211 346779998887776655443
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.28 E-value=0.0076 Score=57.77 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...-+.++|.+|+|||.||..+.+. -+...+ .+.|+++ .+++..+-.. .. ........+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~--~v~f~~~------~~L~~~l~~~----~~------~~~~~~~~~~l 106 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIRKGY--SVLFITA------SDLLDELKQS----RS------DGSYEELLKRL 106 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEEH------HHHHHHHHCC----HC------CTTHCHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hccCCc--ceeEeec------Cceecccccc----cc------ccchhhhcCcc
Confidence 4457999999999999999999863 333333 3456654 3444444321 11 01112333444
Q ss_pred cCCcEEEEEeCCCC
Q 003321 284 LGSRCLVVLDDVWS 297 (830)
Q Consensus 284 ~~kr~LlVlDdv~~ 297 (830)
. +-=||||||+-.
T Consensus 107 ~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 107 K-RVDLLILDDLGY 119 (178)
T ss_dssp H-TSSCEEEETCTS
T ss_pred c-cccEecccccce
Confidence 3 345778999974
No 210
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.25 E-value=0.0019 Score=63.28 Aligned_cols=195 Identities=14% Similarity=0.049 Sum_probs=104.6
Q ss_pred hhhhcccCceEEEccccCCccccCCC-CCCCCccccCeeeecccccCccC--------------CCccccCCCceEEeee
Q 003321 586 FIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQLP--------------KSSIPLKKMQKISFVL 650 (830)
Q Consensus 586 ~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~lp--------------~~~~~l~~L~~L~l~~ 650 (830)
.+.+|++|+..+++++.++......+ ..+++-+.|.+|.|++|++..+. .....-+.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34455666666665554433222111 22344455666666666543221 1122235566666655
Q ss_pred ccccccccccccCcCCCCCccceeccccccccCc-----cccccCCCCCCCEEEeeCcCCCC----ccchhcCCCCCCCE
Q 003321 651 CKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMK-----LPPSICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQI 721 (830)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~ 721 (830)
|++.+.....+....+.-.+|+.+.+..|..-.+ +-..+..+++|+.|+|.+|+... .+...++.++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 5544322221111122224677777776643211 11234567899999999887533 24566788889999
Q ss_pred EEcccCCCCCccchh----h--cCCCCCcEeccccccccC------cchhh-hccCCCCcEEeccCccCCccC
Q 003321 722 LRLYACPHLRTLPAR----I--CELVCLKYLNISQCVSLS------CLPQG-IGNLIRLEKIDMRECSQIWSL 781 (830)
Q Consensus 722 L~l~~~~~l~~lp~~----~--~~l~~L~~L~L~~c~~l~------~lp~~-l~~l~~L~~L~l~~~~~l~~l 781 (830)
|.+.+|-....-..+ + ...|+|+.|-..+|..-. .+|.. -++++-|..|.+.||. +++.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~ 318 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKEL 318 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhH
Confidence 999998655432222 1 235778888777654321 12221 2466777778888777 4433
No 211
>PRK08181 transposase; Validated
Probab=96.23 E-value=0.015 Score=59.54 Aligned_cols=97 Identities=23% Similarity=0.212 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...-+.++|++|+|||.||..+.+. -....+ .+.++++ .++...+...... ......++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~-a~~~g~--~v~f~~~------~~L~~~l~~a~~~----------~~~~~~l~~l 165 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLA-LIENGW--RVLFTRT------TDLVQKLQVARRE----------LQLESAIAKL 165 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHH-HHHcCC--ceeeeeH------HHHHHHHHHHHhC----------CcHHHHHHHH
Confidence 3456899999999999999999853 122222 3445543 4455544332110 0111222222
Q ss_pred cCCcEEEEEeCCCCh---Hh----HHHhh-hcCCCceEEEEeccc
Q 003321 284 LGSRCLVVLDDVWSL---AV----LEQLI-FRVPGCKTLVVSRFK 320 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~---~~----~~~l~-~~~~gs~iivTtr~~ 320 (830)
.+--||||||+... +. +-.+. ....+..+||||...
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34459999999632 11 12222 222235688888754
No 212
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.21 E-value=0.011 Score=59.64 Aligned_cols=57 Identities=19% Similarity=0.436 Sum_probs=38.0
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
.+-++|.+. ..-.++.|+|.+|+|||++|.+++.. .... ...++|++.. .++...+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~-~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKN-GKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEECC-CCCHHHHH
Confidence 344444322 45679999999999999999998843 2222 2456788887 55555443
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.21 E-value=0.047 Score=55.76 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=92.9
Q ss_pred cccccchhhHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH-----HHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGR---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV-----EQLRA 255 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~-----~~l~~ 255 (830)
.++|-..+..++-+++.+. .+..-+.|+|+.|.|||+|...+..+ .+.|.....-|........ ..+.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 4577788888888887543 45566779999999999999888754 3445445445666554333 23333
Q ss_pred HHHHhhcCCCCCCCCCCcccchHHHHhh------cCCcEEEEEeCCCChH------hH---HHhhh--cCCCceEEEEec
Q 003321 256 KVWGFVSGCDSMEPNYVIPHWNLQIQSK------LGSRCLVVLDDVWSLA------VL---EQLIF--RVPGCKTLVVSR 318 (830)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l------~~kr~LlVlDdv~~~~------~~---~~l~~--~~~gs~iivTtr 318 (830)
++..++.... .....-.+.+...+..+ .+-++.+|+|.++-.. .+ =++.. ..|-|-|-+|||
T Consensus 102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 3333332221 11122233333444443 2446889998887321 11 11222 467788889999
Q ss_pred ccccc----------cccceEEccCCCHHHHHHHHHHHh
Q 003321 319 FKFST----------VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 319 ~~~~~----------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
-.... .-..++-++.++.++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 76533 111245556677777777776654
No 214
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.18 E-value=0.035 Score=63.67 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=37.0
Q ss_pred ccccccchhhHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIGR----DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~----~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|.+..++++..++... ...+++.++|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45688888888888888542 34568999999999999999999853
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.17 E-value=0.85 Score=55.26 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=36.3
Q ss_pred cccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|.+..++.+...+... .+..++.++|++|+|||++|+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999988888887531 1235788999999999999999984
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.16 E-value=0.019 Score=55.89 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFV 261 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l 261 (830)
++||.++|+.|+||||.+..++.. .+.+ ..++..++..... ...+-++...+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l 55 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLK-GKKVALISADTYRIGAVEQLKTYAEIL 55 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHT-T--EEEEEESTSSTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--Hhhc-cccceeecCCCCCccHHHHHHHHHHHh
Confidence 479999999999999999888743 3333 5566677765332 2233344444444
No 217
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.002 Score=64.02 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=101.6
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCc-cccCCCceEEeeeccccccccccccCcCCC
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSS-IPLKKMQKISFVLCKINNSLDQSVVDLPKT 667 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 667 (830)
.+++++.|++.++..+.-. .....+.+||.|++|+|+.|++..--... .++.+|++|-|.++.+.-.-.. .....
T Consensus 69 ~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~---s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST---SSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh---hhhhc
Confidence 4566777777665432110 11123567777888888777765322222 4566777777665443211111 11233
Q ss_pred CCccceeccccccccCcc---ccccCCC-CCCCEEEeeCcCCCC--ccchhcCCCCCCCEEEcccCCCCC-ccchhhcCC
Q 003321 668 LPCLTELTFDHCDDLMKL---PPSICGL-QSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLR-TLPARICEL 740 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~l---p~~i~~l-~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~l 740 (830)
+|.++.|.++.|+ +..+ ...+... +.+.+|...+|.... ....--.-++++..+-+..|+.-. +-..+...+
T Consensus 145 lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 145 LPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred chhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 5555555555442 1110 0111111 234445444443111 000011124566666666654321 112234445
Q ss_pred CCCcEeccccccccCcch--hhhccCCCCcEEeccCccCCccCCc------cccccccCceeecC
Q 003321 741 VCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK------SVNSLKSLRQVICE 797 (830)
Q Consensus 741 ~~L~~L~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~------~~~~l~~L~~l~~~ 797 (830)
+.+-.|+|+. +++..+. +.+..+++|..|.+.+++....+-. .++.|++++.|+-+
T Consensus 224 p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred Ccchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 5666677766 3444332 3467788888888888886554432 46778888888755
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.12 E-value=0.069 Score=63.81 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=86.8
Q ss_pred cccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+.|.+..++.+.+.+.- -...+-|.++|++|+|||++|+++++. ....| +.+..+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f----i~v~~~------ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF----IAVRGP------ 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE----EEEehH------
Confidence 356777777777766531 123456889999999999999999953 22222 222221
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh--------------HhHHHhhhc------CCC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL--------------AVLEQLIFR------VPG 310 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~--------------~~~~~l~~~------~~g 310 (830)
++ +....+ .....+...++. ....+..|++|+++.. .....+... ..+
T Consensus 522 ~l----~~~~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 EI----LSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HH----hhcccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11 111000 011112222222 2456789999998632 112333321 123
Q ss_pred ceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 311 CKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 311 s~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
.-||.||..... + ..+..+.++..+.++-.++|+.+.-+... ... .-...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AED---VDLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-Ccc---CCHHHHHHHcCCCC
Confidence 344445533321 1 24567889999999999999766522211 111 12456667776643
No 219
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.12 E-value=0.058 Score=64.42 Aligned_cols=164 Identities=14% Similarity=0.176 Sum_probs=87.3
Q ss_pred cccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+.|.+..++++.+++.- . ...+-|.++|++|+|||+||+.+++. ....| +.++.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~----i~i~~~~----- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF----ISINGPE----- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE----EEEecHH-----
Confidence 467899999888887631 1 33467889999999999999999853 22222 2232211
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------HhHHHh---hhcC--CCce
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQL---IFRV--PGCK 312 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~~~~~l---~~~~--~gs~ 312 (830)
+. ....+ .....+...++. ......+|+||+++.. .....+ ..+. .+..
T Consensus 248 -i~----~~~~g-------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 248 -IM----SKYYG-------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred -Hh----ccccc-------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 10 00000 001111112221 2355678999998642 112222 2222 2334
Q ss_pred EEEEeccccc----c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH
Q 003321 313 TLVVSRFKFS----T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 313 iivTtr~~~~----~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL 374 (830)
++|.+.+..- + .....+.++..+.++-.+++..+.-+. .... ......+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~---d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE---DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc---ccCHHHHHHhCCCCCH
Confidence 4443333321 1 123567788888888888887554211 1111 1235678888888643
No 220
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.08 E-value=0.023 Score=57.17 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhccccccccc-----CCceEEEEecCCCCHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-----NNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-----~~~~~wv~v~~~~~~~~l~~ 255 (830)
..-.++.|+|.+|+|||+||.+++.. ....- +..++|++....++...+.+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 45679999999999999999998732 21121 14567998887777665543
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.27 Score=52.36 Aligned_cols=169 Identities=13% Similarity=0.023 Sum_probs=88.3
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---ccccccCCceE----EEEecCCCCHHHHHHHHHHhhcCC
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSYFNNRIL----FLTVSQSPNVEQLRAKVWGFVSGC 264 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~~F~~~~~----wv~v~~~~~~~~l~~~i~~~l~~~ 264 (830)
-+++.+.+..+.-..-+-+.|+.|+||+|+|..+...- .....-.|+.+ ++..+..+|+..+ ...
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TPE 82 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecc
Confidence 35566666544556688899999999999998865311 00000011100 0100111111000 000
Q ss_pred CCCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCC--hHhHHHhhh----cCCCceEEEEecccc-cc----cccce
Q 003321 265 DSMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSRFKF-ST----VLNDT 328 (830)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtr~~~-~~----~~~~~ 328 (830)
. ....-.+++.+...+.+ .+++=.+|+|+++. .+.-+.++. .-+++.+|++|.... +. .....
T Consensus 83 ~-~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 83 K-GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred c-ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 00000112222222221 36677889999884 344455543 334666666666543 22 22457
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+.+++++.++..+.+.... + ..++.+..++..++|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-~-------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV-T-------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc-C-------CCHHHHHHHHHHcCCCHHHHH
Confidence 8899999999988775431 1 112346788999999997543
No 222
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0035 Score=61.66 Aligned_cols=83 Identities=25% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCccceeccccccccCccccccCCCCCCCEEEeeCc--CCCCccchhcCCCCCCCEEEcccCCCC--CccchhhcCCCCC
Q 003321 668 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC--HSLQELPADIGKMKSLQILRLYACPHL--RTLPARICELVCL 743 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c--~~l~~lp~~i~~l~~L~~L~l~~~~~l--~~lp~~~~~l~~L 743 (830)
+.+|+.|++.++. ++.+ ..+-.|++|++|.++.| +....++....++++|++|++++|..- ..++ .+..+.+|
T Consensus 42 ~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENL 118 (260)
T ss_pred ccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcch
Confidence 4455555554442 1111 11234556666666655 333344434444466666666654321 1222 13444555
Q ss_pred cEeccccccc
Q 003321 744 KYLNISQCVS 753 (830)
Q Consensus 744 ~~L~L~~c~~ 753 (830)
..|++.+|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 5566655543
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.01 E-value=0.01 Score=59.04 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..-+++-|+|++|+|||++|.+++. ..... ...++|++... ++...+.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~-g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQ-GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhC-CCeEEEEECCC-CCHHHHHHH
Confidence 3467999999999999999999874 23223 24567988875 666665543
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.023 Score=65.63 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred cccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhcccccccccCC--ceEEEEecCCCCHH
Q 003321 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN--RILFLTVSQSPNVE 251 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~--~~~wv~v~~~~~~~ 251 (830)
...++|-+..++.+.+.+..+ .+..+.-..|+.|+|||.||+.+... -|+. ..+-+++|
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMS------ 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMS------ 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechH------
Confidence 345799999999988888431 35667888999999999999998731 2321 12233333
Q ss_pred HHHH-HHHHhhcCCCCCCCCCCcccchHHHHhhcCCcE-EEEEeCCCC--hHhHHHhh
Q 003321 252 QLRA-KVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRC-LVVLDDVWS--LAVLEQLI 305 (830)
Q Consensus 252 ~l~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~-LlVlDdv~~--~~~~~~l~ 305 (830)
+... .-.+.+.+..+.--+. ++....-+..+.++| .|.||+|.. .+.++-|+
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGy--eeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGY--EEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred HHHHHHHHHHHhCCCCCCcee--ccccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 3322 1222332322211111 111223334466767 788999985 44555444
No 225
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0053 Score=55.62 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=25.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccc-cCCceEEE
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFL 242 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~~wv 242 (830)
--|+|.||+|+||||+++.+.+ ..+.. |..+-||.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 4689999999999999999985 33333 55544443
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.14 Score=57.08 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-------CCHHHHHHHHHHhhcCCCCCCCCCCccc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-------PNVEQLRAKVWGFVSGCDSMEPNYVIPH 275 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 275 (830)
+..+=|-.+|++|.|||++|+++.|. .+-.| +.++.. -.-+..++++++..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF------lsvkgpEL~sk~vGeSEr~ir~iF~kA-------------- 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE--AGMNF------LSVKGPELFSKYVGESERAIREVFRKA-------------- 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh--hcCCe------eeccCHHHHHHhcCchHHHHHHHHHHH--------------
Confidence 56788999999999999999999963 33333 333221 01122233333222
Q ss_pred chHHHHhhcCCcEEEEEeCCCCh-------------HhHHHhhh---cC-CCceEEE-Eeccc--ccc-------cccce
Q 003321 276 WNLQIQSKLGSRCLVVLDDVWSL-------------AVLEQLIF---RV-PGCKTLV-VSRFK--FST-------VLNDT 328 (830)
Q Consensus 276 ~~~~~~~l~~kr~LlVlDdv~~~-------------~~~~~l~~---~~-~gs~iiv-Ttr~~--~~~-------~~~~~ 328 (830)
..--.++|.||.++.. ..+..++. +. ....|+| ...++ .+. ..+..
T Consensus 524 -------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~i 596 (693)
T KOG0730|consen 524 -------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRI 596 (693)
T ss_pred -------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCccccee
Confidence 1234577888877642 12333332 22 2223333 22222 221 35678
Q ss_pred EEccCCCHHHHHHHHHHHhcC
Q 003321 329 YEVELLREDESLSLFCYSAFG 349 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~ 349 (830)
+.+++-+.+.-.++|+.++-+
T Consensus 597 iyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 597 IYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeecCccHHHHHHHHHHHHhc
Confidence 899999999999999988743
No 227
>PRK06696 uridine kinase; Validated
Probab=95.95 E-value=0.0079 Score=60.32 Aligned_cols=40 Identities=28% Similarity=0.237 Sum_probs=31.1
Q ss_pred cchhhHHHHHHHhc--CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 188 MALGKNKVKEMVIG--RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 188 r~~~~~~l~~~L~~--~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
|..-+++|.+.+.. .+...+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34445666666653 35688999999999999999999984
No 228
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.95 E-value=0.019 Score=60.13 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999954
No 229
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.93 E-value=0.11 Score=61.45 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=36.4
Q ss_pred ccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..++.+.+.+... .....+-++|++|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999888887521 2356789999999999999999984
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.017 Score=61.01 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
...+.++|.+|+|||.||.++++.. +...+ .|.++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~--~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL-LDRGK--SVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH-HHCCC--eEEEEEHH
Confidence 3679999999999999999999632 23323 34465443
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.90 E-value=0.15 Score=57.40 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=85.9
Q ss_pred cccccccchhhHHHHHHHhc---C-CCceEEEEEcCCCChHHHHHHHHhccc------ccccccCCceEEEEecCCCCHH
Q 003321 182 NLMGIGMALGKNKVKEMVIG---R-DDLSVLGICGIGGSGKTTLALEVCRDH------QVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~-~~~~vi~I~G~~GiGKTtLA~~v~~~~------~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
+..+-+|+.+..+|..++.. . ..-+.+-|.|-+|.|||..+..|.+.- .--..|+. + .++.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-v-eINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-V-EINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-E-EEcceeecCHH
Confidence 44567899999999988843 2 334588999999999999999998631 12234642 2 45555566799
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh--hcCCcEEEEEeCCCC-----hHhHHHhhh--cCCCceEEEEe
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS--KLGSRCLVVLDDVWS-----LAVLEQLIF--RVPGCKTLVVS 317 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--l~~kr~LlVlDdv~~-----~~~~~~l~~--~~~gs~iivTt 317 (830)
++...|+..+.+...... ...+.+...+.. -+.+.++|++|+++. .+.+-.|.. ..++||.+|.+
T Consensus 473 ~~Y~~I~~~lsg~~~~~~-~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWD-AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcccHH-HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999999977643221 111122211111 145678999998863 333444432 46799887765
No 232
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.029 Score=56.79 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccc--ccccCCceEEEEe
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQV--TSYFNNRILFLTV 244 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~--~~~F~~~~~wv~v 244 (830)
-|+|-+.|++|.|||+|++++++.-.+ .+.|..++ .+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~-liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ-LIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce-EEEE
Confidence 488999999999999999999976443 34454444 3444
No 233
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.1 Score=56.49 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHH-
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ- 281 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~- 281 (830)
.++.-+.+.|++|+|||+||..++ ....|+. |.+-.. +++. + .........+...++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA----~~S~FPF----vKiiSp---e~mi--------G---~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIA----LSSDFPF----VKIISP---EDMI--------G---LSESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHH----hhcCCCe----EEEeCh---HHcc--------C---ccHHHHHHHHHHHHHH
Confidence 345677889999999999999998 4567873 322211 1100 0 000000111111111
Q ss_pred hhcCCcEEEEEeCCCChHhHHHhhhcC---------------C--CceEEE--Eecccccc-------cccceEEccCCC
Q 003321 282 SKLGSRCLVVLDDVWSLAVLEQLIFRV---------------P--GCKTLV--VSRFKFST-------VLNDTYEVELLR 335 (830)
Q Consensus 282 ~l~~kr~LlVlDdv~~~~~~~~l~~~~---------------~--gs~iiv--Ttr~~~~~-------~~~~~~~l~~L~ 335 (830)
..+..--.||+||+...-+|-++.+++ | |-|.+| ||....+. ....+|+|+.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 124455689999998766655544321 2 545544 34333332 335689999988
Q ss_pred H-HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHc
Q 003321 336 E-DESLSLFCYSAFGQKTIPPSANENLVKQIVKKC 369 (830)
Q Consensus 336 ~-~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c 369 (830)
. ++..+.++..- ...++..+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc----CCCcchhHHHHHHHhccc
Confidence 7 67777776532 122233445667777766
No 234
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.83 E-value=0.024 Score=55.06 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred chhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec----CC--CCHHHHH--------
Q 003321 189 ALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS----QS--PNVEQLR-------- 254 (830)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~----~~--~~~~~l~-------- 254 (830)
..+-...++.|. ...++.+.|++|.|||.||.+..-+.-..+.|+ +++++.-. +. +-+.++.
T Consensus 6 ~~~Q~~~~~al~---~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALL---NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHH---H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHH---hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 334455566665 456999999999999999998875443446665 34344211 10 1111111
Q ss_pred --HHHHHhhcCCCCCC---CCCCcccchHHHHhhcC---CcEEEEEeCCCCh--HhHHHhhhc-CCCceEEEEeccccc
Q 003321 255 --AKVWGFVSGCDSME---PNYVIPHWNLQIQSKLG---SRCLVVLDDVWSL--AVLEQLIFR-VPGCKTLVVSRFKFS 322 (830)
Q Consensus 255 --~~i~~~l~~~~~~~---~~~~~~~~~~~~~~l~~---kr~LlVlDdv~~~--~~~~~l~~~-~~gs~iivTtr~~~~ 322 (830)
.+.+..+.+..... ....++. .....++| ...+||+|++++. +++..+..+ +.|||+|++--...+
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~--~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEI--EPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEE--EEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-----
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEE--EehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceee
Confidence 11122211111000 0000000 00112234 3579999999864 577777654 579999998765543
No 235
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.83 E-value=0.13 Score=58.52 Aligned_cols=43 Identities=30% Similarity=0.268 Sum_probs=34.5
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.+..+..+...+.. ....-+-|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~-~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG-PNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHH
Confidence 468988888888877653 3344567899999999999999975
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.74 E-value=0.051 Score=54.76 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
...+.++|.+|+|||+||.++++.-. ... ..++++++ .++...+-...... . ......++.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~-~~g--~~v~~it~------~~l~~~l~~~~~~~-----~---~~~~~~l~~l~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL-LRG--KSVLIITV------ADIMSAMKDTFSNS-----E---TSEEQLLNDLS 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-hcC--CeEEEEEH------HHHHHHHHHHHhhc-----c---ccHHHHHHHhc
Confidence 45789999999999999999996422 221 23445533 34444443322100 0 01122333333
Q ss_pred CCcEEEEEeCCCCh--HhHH-----Hhhh-cC-CCceEEEEecc
Q 003321 285 GSRCLVVLDDVWSL--AVLE-----QLIF-RV-PGCKTLVVSRF 319 (830)
Q Consensus 285 ~kr~LlVlDdv~~~--~~~~-----~l~~-~~-~gs~iivTtr~ 319 (830)
+.=+|||||+... ..|+ .+.. .. ..-.+||||-.
T Consensus 162 -~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 -NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred -cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4558889999643 2333 2322 12 24556777663
No 237
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.1 Score=58.49 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC--CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
..-|-|.|+.|+|||+||+++++... +.+. +.+..++.+.- ...+.+++.+-..+ .+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~-~hv~~v~Cs~l~~~~~e~iQk~l~~vf------------------se~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLI-AHVEIVSCSTLDGSSLEKIQKFLNNVF------------------SEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccc-eEEEEEechhccchhHHHHHHHHHHHH------------------HHH
Confidence 45688999999999999999996433 2222 23334444432 22334433332221 122
Q ss_pred hcCCcEEEEEeCCC
Q 003321 283 KLGSRCLVVLDDVW 296 (830)
Q Consensus 283 l~~kr~LlVlDdv~ 296 (830)
+...+-+|||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 45678899999997
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.63 Score=49.47 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCcEEEEEeCCCC--hHhHHHhhh----cCCCceEEEEecccc-cc----cccceEEccCCCHHHHHHHHHHHhcCCCCC
Q 003321 285 GSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTI 353 (830)
Q Consensus 285 ~kr~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 353 (830)
+++-.+|+|+++. .+..+.++. .-+++.+|++|.+.. +. .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 5566888899984 455566554 234666666665543 22 234678999999999998887641 1
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 354 PPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 354 ~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
+ . ...++..++|.|..+..+.
T Consensus 206 ~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899997655443
No 239
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.21 Score=48.59 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=75.6
Q ss_pred ccchhhHHHHHHHhc---------C---CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 187 GMALGKNKVKEMVIG---------R---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 187 gr~~~~~~l~~~L~~---------~---~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
|-+..+.+|.+.+.- + ..++=+.++|++|.|||-||++|+++ . .+.++.||.+. +.
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t-~c~firvsgse----lv 218 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------T-DCTFIRVSGSE----LV 218 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------c-ceEEEEechHH----HH
Confidence 445566666665421 1 45677889999999999999999953 2 23477777542 21
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHH-HhhcCCcEEEEEeCCCCh--------------------HhHHHhhh--cCCCc
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQI-QSKLGSRCLVVLDDVWSL--------------------AVLEQLIF--RVPGC 311 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~-~~l~~kr~LlVlDdv~~~--------------------~~~~~l~~--~~~gs 311 (830)
++.+.. . ....+..+ -...+-+-.|+.|.+++. +.++++-+ ...+-
T Consensus 219 qk~ige----g-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 219 QKYIGE----G-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHhhh----h-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 111110 0 00001111 111455677788877642 11222211 23466
Q ss_pred eEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHh
Q 003321 312 KTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 312 ~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
+||+.|..-.+. ..+.-++.++.+.+.-.++++-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 777766544332 334567777777777777776554
No 240
>PRK04296 thymidine kinase; Provisional
Probab=95.58 E-value=0.025 Score=55.05 Aligned_cols=108 Identities=14% Similarity=-0.035 Sum_probs=56.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh---
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS--- 282 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--- 282 (830)
.++.|+|..|.||||+|..... +...+- .+++.+. ..++.......+++.++..... .........++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~---~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREA---IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcC-CeEEEEe--ccccccccCCcEecCCCCcccc---eEeCChHHHHHHHHh
Confidence 4778999999999999998874 332222 2343331 1112222222334443211100 000111112222
Q ss_pred hcCCcEEEEEeCCCC--hHhHHHhhh--cCCCceEEEEecccc
Q 003321 283 KLGSRCLVVLDDVWS--LAVLEQLIF--RVPGCKTLVVSRFKF 321 (830)
Q Consensus 283 l~~kr~LlVlDdv~~--~~~~~~l~~--~~~gs~iivTtr~~~ 321 (830)
..++.-+||+|.+.. .++..++.. ...|..|++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 223456899999974 343444443 345889999988754
No 241
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.58 E-value=0.2 Score=60.76 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred ccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..++.+.+.+... ....++.++|++|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999888532 1245788999999999999999984
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.19 Score=55.42 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=56.6
Q ss_pred cccccchhhHHHHHHHhcC-----------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 184 MGIGMALGKNKVKEMVIGR-----------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-----------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
.+=|.+....++.+++..- ...+=|-++|++|.|||.||+++.++..+ . ++.++-.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P------f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P------FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c------eEeecch-----
Confidence 4567888888888877421 45677889999999999999999964332 2 2333321
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCC
Q 003321 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWS 297 (830)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~ 297 (830)
.|++...+. ....++..+.. ...-.+++++|+++-
T Consensus 258 ---eivSGvSGE-------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSGE-------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCcc-------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222322221 22222333322 356799999999973
No 243
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.012 Score=56.27 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 244
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.52 E-value=0.0097 Score=58.26 Aligned_cols=21 Identities=52% Similarity=0.849 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 245
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.019 Score=57.38 Aligned_cols=159 Identities=20% Similarity=0.170 Sum_probs=74.9
Q ss_pred hhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC--ccCCCccccCCCceEEeeecccccccc--cc-
Q 003321 586 FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS--QLPKSSIPLKKMQKISFVLCKINNSLD--QS- 660 (830)
Q Consensus 586 ~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~--~~- 660 (830)
.+.+|+.|++|+++.++...... ..+ ..+.+|++|-|.++.+. .+...+..++.++.|+++.|....... ..
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~-~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIK-SLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHhcCccceEeeccCCcCCCccc-cCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 34566666666665554322111 110 23446666666665543 333444455555555555443221100 00
Q ss_pred ----------------------ccCcCCCCCccceeccccccccCcc--ccccCCCCCCCEEEeeCcCCCCccc--hhcC
Q 003321 661 ----------------------VVDLPKTLPCLTELTFDHCDDLMKL--PPSICGLQSLKNLSVTNCHSLQELP--ADIG 714 (830)
Q Consensus 661 ----------------------~~~~~~~~~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~L~~c~~l~~lp--~~i~ 714 (830)
...+...|||+..+.+..|. +... -.+...++.+-.|+|+.+. +.... +.+.
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln 246 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALN 246 (418)
T ss_pred cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHc
Confidence 11112234444444444432 1111 1223345555566666533 33322 4556
Q ss_pred CCCCCCEEEcccCCCCCccch------hhcCCCCCcEeccc
Q 003321 715 KMKSLQILRLYACPHLRTLPA------RICELVCLKYLNIS 749 (830)
Q Consensus 715 ~l~~L~~L~l~~~~~l~~lp~------~~~~l~~L~~L~L~ 749 (830)
.++.|..|.+..++.+..+-. .++.|++++.|+=+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 677777777777666554432 25667777777643
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.041 Score=56.06 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
+...-+.++|.+|+|||.||.++.+.-. +..+ .+.++++. ++..++....... .....+..
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~--sv~f~~~~------el~~~Lk~~~~~~----------~~~~~l~~ 163 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL-KAGI--SVLFITAP------DLLSKLKAAFDEG----------RLEEKLLR 163 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC--eEEEEEHH------HHHHHHHHHHhcC----------chHHHHHH
Confidence 3667889999999999999999997433 3333 45565443 5555554443220 11111222
Q ss_pred hcCCcEEEEEeCCCC
Q 003321 283 KLGSRCLVVLDDVWS 297 (830)
Q Consensus 283 l~~kr~LlVlDdv~~ 297 (830)
.-.+-=||||||+-.
T Consensus 164 ~l~~~dlLIiDDlG~ 178 (254)
T COG1484 164 ELKKVDLLIIDDIGY 178 (254)
T ss_pred HhhcCCEEEEecccC
Confidence 123445899999964
No 247
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.36 Score=55.68 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=95.6
Q ss_pred ccccccchhhHHHHHHH---hcC--------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMV---IGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.++.|-++.+++|.+++ ... .-++=+-++|++|.|||-||++++-...| + +++++.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV----P----F~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----P----FFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC----c----eeeechH----
Confidence 45677777777776665 221 23567889999999999999999953222 1 3444432
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-----------------HhHHHhhh---cCC-
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-----------------AVLEQLIF---RVP- 309 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-----------------~~~~~l~~---~~~- 309 (830)
++ .+.+.+.. ......+... ....++.|.+|+++.. ..++++.. ++.
T Consensus 379 EF----vE~~~g~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 EF----VEMFVGVG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred HH----HHHhcccc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 11 11111100 0111112211 2456778888887632 23445543 222
Q ss_pred Cc-eEEE-Eecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 310 GC-KTLV-VSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 310 gs-~iiv-Ttr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
+. -|++ +|....+. ..+..+.++..+.....++|..|+-..+.. ....++++ |+....|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 22 3333 34333332 345778899999999999999988544332 22334566 888888887553
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.48 E-value=0.076 Score=55.67 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
..+-+.++|..|+|||.||.++++... ...+. +.+++++ ++...+-...... .....++.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~--v~~~~~~------~l~~~lk~~~~~~----------~~~~~l~~l 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS--STLLHFP------EFIRELKNSISDG----------SVKEKIDAV 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC--EEEEEHH------HHHHHHHHHHhcC----------cHHHHHHHh
Confidence 456789999999999999999997432 33343 4466554 4444444333111 112223332
Q ss_pred cCCcEEEEEeCCCCh--HhH------HHhhh-c-CCCceEEEEecc
Q 003321 284 LGSRCLVVLDDVWSL--AVL------EQLIF-R-VPGCKTLVVSRF 319 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~--~~~------~~l~~-~-~~gs~iivTtr~ 319 (830)
.+-=||||||+... ..| ..+.. . ..+-.+|+||-.
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 35668999999632 233 23322 2 245667777763
No 249
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.48 E-value=0.0043 Score=60.92 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=18.7
Q ss_pred CCCccccCeeeecccccC-ccCC----CccccCCCceEEeeeccc
Q 003321 614 CSNLTNLRSLWLEKVSIS-QLPK----SSIPLKKMQKISFVLCKI 653 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~-~lp~----~~~~l~~L~~L~l~~~~~ 653 (830)
+-+|++|+..+|+.|.+. ..|+ -+.+-..|.+|.++.|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 345555555555555544 2222 133334555555554443
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.46 E-value=0.011 Score=58.30 Aligned_cols=81 Identities=23% Similarity=0.269 Sum_probs=48.8
Q ss_pred CCccceeccccc--cccCccccccCCCCCCCEEEeeCcCCC--CccchhcCCCCCCCEEEcccCCCCCccc----hhhcC
Q 003321 668 LPCLTELTFDHC--DDLMKLPPSICGLQSLKNLSVTNCHSL--QELPADIGKMKSLQILRLYACPHLRTLP----ARICE 739 (830)
Q Consensus 668 ~~~L~~L~l~~~--~~l~~lp~~i~~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~l~~~~~l~~lp----~~~~~ 739 (830)
+++|+.|.++.| .....++.....+++|++|++++|+.- ++++ .+..+.+|..|++..|.... +- ..+.-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHHHHH
Confidence 677888888777 445556655666688888888876531 1222 23456667777777765443 21 12444
Q ss_pred CCCCcEecccc
Q 003321 740 LVCLKYLNISQ 750 (830)
Q Consensus 740 l~~L~~L~L~~ 750 (830)
+++|++|+-..
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 56677666544
No 251
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.46 E-value=0.01 Score=53.63 Aligned_cols=21 Identities=57% Similarity=0.876 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 252
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.40 E-value=0.011 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.36 E-value=0.035 Score=55.50 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=34.8
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC
Q 003321 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (830)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (830)
.+-++|-+. ..-+++.|.|.+|+||||+|.+++. ..... ...++|++....+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCCCCH
Confidence 344444322 4567999999999999999999884 22222 33566887655443
No 254
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.36 E-value=0.013 Score=64.94 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.++.++++++.|.. ...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 468999999999999932 24567999999999999999999984
No 255
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.34 E-value=0.014 Score=57.74 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+...+|+|+|++|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
No 256
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.33 E-value=0.23 Score=48.83 Aligned_cols=142 Identities=19% Similarity=0.252 Sum_probs=77.3
Q ss_pred ccccccchhhHH---HHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 183 LMGIGMALGKNK---VKEMVIGR-----DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 183 ~~~vgr~~~~~~---l~~~L~~~-----~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
..+||.++.+.+ |++.|... =.++-|..+|++|.|||-+|+++.|..++ .| +-|... ++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~----l~vkat------~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL----LLVKAT------ELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce----EEechH------HHH
Confidence 456887776554 33333322 13688999999999999999999975432 22 122211 111
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHHH-hhcCCcEEEEEeCCCCh--------------HhHHHhhhc------CCCceE
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQ-SKLGSRCLVVLDDVWSL--------------AVLEQLIFR------VPGCKT 313 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~-~l~~kr~LlVlDdv~~~--------------~~~~~l~~~------~~gs~i 313 (830)
. +.++ +...++....+ ..+--+|.+.||.++-. +..+.++.. ..|...
T Consensus 189 G---ehVG--------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 189 G---EHVG--------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred H---HHhh--------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1 1110 11111122211 12557899999998742 223334322 124444
Q ss_pred EEEecccccc------cccceEEccCCCHHHHHHHHHHHh
Q 003321 314 LVVSRFKFST------VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 314 ivTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
|-.|...... ....-++....+++|-..++..++
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 4444333221 223456777788888888888877
No 257
>PRK08233 hypothetical protein; Provisional
Probab=95.33 E-value=0.014 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999984
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.28 E-value=0.03 Score=52.89 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=17.4
Q ss_pred ccCeeeecccccCccCCCccccCCCceEEeeeccc
Q 003321 619 NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKI 653 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 653 (830)
+...+||++|.+..++. +..++.|.+|.+..|++
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRI 76 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcc
Confidence 45566666666554431 23344555555554443
No 259
>PRK07667 uridine kinase; Provisional
Probab=95.26 E-value=0.024 Score=55.39 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=27.0
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.+.+.+... ....+|+|-|.+|.||||+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455555433 4557999999999999999999984
No 260
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.26 E-value=0.015 Score=57.68 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
No 261
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.26 E-value=0.065 Score=52.40 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH-------HhhcCCCCCCCCCCccc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW-------GFVSGCDSMEPNYVIPH 275 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~-------~~l~~~~~~~~~~~~~~ 275 (830)
.+-++..|.|++|.||||+++.+... .... ...++++ .........+.+..- +.+.............
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~-apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~- 90 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGL-APTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPE- 90 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEE-ESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEE-CCcHHHHHHHHHhhCcchhhHHHHHhcCCccccccccc-
Confidence 34578889999999999999998743 2222 2244333 332222233333210 0000000000000000
Q ss_pred chHHHHhhcCCcEEEEEeCCCC--hHhHHHhhhcC--CCceEEEEeccc
Q 003321 276 WNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIFRV--PGCKTLVVSRFK 320 (830)
Q Consensus 276 ~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~~~--~gs~iivTtr~~ 320 (830)
..++-+||+|++.. ...+..+.... .|+++|+.--..
T Consensus 91 --------~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 91 --------LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp ---------TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred --------CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 13445999999884 45677666543 378888765544
No 262
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.14 Score=54.86 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=66.8
Q ss_pred cccchhhHHHHHHHhcCCCceE-EEEEcCCCChHHHHHHHHhccccccc-------------------ccCCceEEEEec
Q 003321 186 IGMALGKNKVKEMVIGRDDLSV-LGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS 245 (830)
Q Consensus 186 vgr~~~~~~l~~~L~~~~~~~v-i~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~ 245 (830)
+|-+....++..+.....+..- +-+.|++|+||||+|.++.+.---.. .++ .+..++.+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-d~lel~~s 82 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP-DFLELNPS 82 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC-ceEEeccc
Confidence 5556666777777765444444 99999999999999999875311100 111 23345555
Q ss_pred CCCC---HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH--hHHHhhh---c-CCCceEEEE
Q 003321 246 QSPN---VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIF---R-VPGCKTLVV 316 (830)
Q Consensus 246 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~---~-~~gs~iivT 316 (830)
.... ..+..+.+.+...... ..++.-++++|+++... .-..+.. . .+.+.+|++
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 4444 2333344433322111 03667789999998542 2333332 2 346778877
Q ss_pred ecc
Q 003321 317 SRF 319 (830)
Q Consensus 317 tr~ 319 (830)
|..
T Consensus 146 ~n~ 148 (325)
T COG0470 146 TND 148 (325)
T ss_pred cCC
Confidence 763
No 263
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.23 E-value=0.029 Score=53.06 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcC-CCCCCCEEEcccCCCCCccc--hhhcCCCCCc
Q 003321 668 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLP--ARICELVCLK 744 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~ 744 (830)
..+...++|++| .+..++ .+..++.|.+|.+++|. +..+...++ .+++|..|.+.+|+ +..+- .-+..+|+|+
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccc
Confidence 344556666665 344443 25566677777776655 333333333 34556666666643 22221 1134455555
Q ss_pred Eeccccc
Q 003321 745 YLNISQC 751 (830)
Q Consensus 745 ~L~L~~c 751 (830)
+|.+-+|
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 5555543
No 264
>PLN03194 putative disease resistance protein; Provisional
Probab=95.21 E-value=0.00096 Score=62.37 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=76.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHhhhhhHHHHHhhCCCCCC--CcHHHHHHHHHHHHHHHHHHHH
Q 003321 4 TDLFAGEIAAELLKMLISICRRSSLCKSSAEQLRTTIEQLLPTIHEIKYSGVELPP--IRQTQLDHLSETLKDGIELCRK 81 (830)
Q Consensus 4 ~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~l~~~l~~~l~~i~~~~~~~~e~~~--~~~~~~~~~~~~l~~~~~~~~d 81 (830)
.++|+|....++...+.+.+.+++...|+. .++. +.+.+. .-.+.+..-+++-+-++...+.
T Consensus 27 yDVFISFrG~DtR~~FvshL~~aL~~~GI~---------------vF~D-~~el~~G~~i~~~L~~AIeeSri~IvVfS~ 90 (187)
T PLN03194 27 CDVFINHRGIDTKRTIATLLYDHLSRLNLR---------------PFLD-NKNMKPGDKLFDKINSAIRNCKVGVAVFSP 90 (187)
T ss_pred CcEEEeCCCccccccHHHHHHHHHHHCCCE---------------EEEc-CccccCCCcHHHHHHHHHHhCeEEEEEECC
Confidence 466777766777777777776665444432 1211 111111 1112344445555556666778
Q ss_pred hhcCCchhhhcchHHHHHHHHHHHHhhhhhccccchhh-hhhhhhhHHhhhhHHhhhHHHHHHHHHHhhccccccCCCCc
Q 003321 82 VLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGSARRLEQRLGAMRIGVGGGGW 160 (830)
Q Consensus 82 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (830)
.|+++.||+ .|++.++++.. ...|++|.| |+|++++... . ...+++++|+.|+....+..|+
T Consensus 91 ~Ya~S~WCL---dEL~~I~e~~~------~ViPIFY~VdPsdVr~q~~~--~------~~~e~v~~Wr~AL~~va~l~G~ 153 (187)
T PLN03194 91 RYCESYFCL---HELALIMESKK------RVIPIFCDVKPSQLRVVDNG--T------CPDEEIRRFNWALEEAKYTVGL 153 (187)
T ss_pred CcccchhHH---HHHHHHHHcCC------EEEEEEecCCHHHhhccccC--C------CCHHHHHHHHHHHHHHhccccc
Confidence 899999999 68888887521 245888888 8888775221 1 1237889999998866666665
No 265
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.21 E-value=0.2 Score=51.44 Aligned_cols=125 Identities=16% Similarity=0.070 Sum_probs=64.7
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEE---ecCCCCHHHHHHHHHHhhcCCCCCC
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT---VSQSPNVEQLRAKVWGFVSGCDSME 268 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~---v~~~~~~~~l~~~i~~~l~~~~~~~ 268 (830)
.+.+...+.+..+..-++|+|+.|.|||||.+.+... +.. ....+ ++. +.......++...+ ..+.......
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i-~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQL-GLRGKKVGIVDERSEIAGCV-NGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceE-EECCEEeecchhHHHHHHHh-cccccccccc
Confidence 4455555654455678999999999999999999843 222 12222 321 11111112222111 1111110000
Q ss_pred CCCCcc---cchHHHHhh-cCCcEEEEEeCCCChHhHHHhhhc-CCCceEEEEecccc
Q 003321 269 PNYVIP---HWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFR-VPGCKTLVVSRFKF 321 (830)
Q Consensus 269 ~~~~~~---~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~l~~~-~~gs~iivTtr~~~ 321 (830)
..+..+ ......... ...+-++++|.+...+.+..+... ..|..+|+||-+..
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~ 230 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRD 230 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhH
Confidence 001111 111111111 357889999999888766666543 35778888887543
No 266
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.16 E-value=0.039 Score=58.03 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=44.9
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccc---cccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
..+-++|-+. ..-+++-|+|.+|+|||+||..++-..... ..-...++|++....|+++++.+. ++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~-a~~~ 154 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI-AERF 154 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH-HHHc
Confidence 3344444322 456799999999999999998876221211 122356789999998998887653 4443
No 267
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.15 E-value=0.1 Score=62.83 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=36.9
Q ss_pred cccccccchhhHHHHHHHhc--------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 182 NLMGIGMALGKNKVKEMVIG--------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~--------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|.+..++.+.+.+.. +.+..++.++|++|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999888742 12456889999999999999998874
No 268
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.016 Score=53.53 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999983
No 269
>PTZ00301 uridine kinase; Provisional
Probab=95.14 E-value=0.017 Score=56.93 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|||.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998873
No 270
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.12 E-value=0.038 Score=54.17 Aligned_cols=106 Identities=9% Similarity=0.121 Sum_probs=52.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchH-HHHhhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNL-QIQSKL 284 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~l~ 284 (830)
.+|.|+|+.|.||||++..+... .......++ + .+.+... .........+.... .. .....+.. ....+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i-~-t~e~~~E--~~~~~~~~~i~q~~-vg--~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHI-L-TIEDPIE--FVHESKRSLINQRE-VG--LDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEE-E-EEcCCcc--ccccCccceeeecc-cC--CCccCHHHHHHHHhc
Confidence 47899999999999999987742 322333333 2 2222211 00000000000000 00 01111222 223344
Q ss_pred CCcEEEEEeCCCChHhHHHhhh-cCCCceEEEEeccc
Q 003321 285 GSRCLVVLDDVWSLAVLEQLIF-RVPGCKTLVVSRFK 320 (830)
Q Consensus 285 ~kr~LlVlDdv~~~~~~~~l~~-~~~gs~iivTtr~~ 320 (830)
...=.+++|++.+.+.+..... ...|-.++.|+-..
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTN 109 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence 5567999999988876655443 33465665555433
No 271
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.11 E-value=0.13 Score=62.17 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=35.8
Q ss_pred cccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|-+..++.+.+.+... .+..++.++|++|+|||+||+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 356789999999988887421 2245677999999999999999884
No 272
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.11 E-value=0.02 Score=59.93 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
+.-+++-|+|++|+||||||.+++.. .... ...++|++..+.++..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~-g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV 98 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEcccchhHHH
Confidence 56679999999999999999988732 3222 4556788877666653
No 273
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.29 Score=54.18 Aligned_cols=122 Identities=22% Similarity=0.273 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS- 282 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 282 (830)
...=|.+||++|.|||-||++|+|. .+-+ |++|... +++.+...+ .....+..+++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~N------FisVKGP----ELlNkYVGE-----------SErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGAN------FISVKGP----ELLNKYVGE-----------SERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCc------eEeecCH----HHHHHHhhh-----------HHHHHHHHHHHh
Confidence 3556789999999999999999974 3333 3444432 222222111 11222233332
Q ss_pred hcCCcEEEEEeCCCCh-------------HhHHHhhh---c---CCCceEEEEecccc-cc-------cccceEEccCCC
Q 003321 283 KLGSRCLVVLDDVWSL-------------AVLEQLIF---R---VPGCKTLVVSRFKF-ST-------VLNDTYEVELLR 335 (830)
Q Consensus 283 l~~kr~LlVlDdv~~~-------------~~~~~l~~---~---~~gs~iivTtr~~~-~~-------~~~~~~~l~~L~ 335 (830)
...-.|.|++|.++.. ....+++. + -.|.-||-.|-... +. ..+...-|+..+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3577999999999742 23444443 2 23555555443332 22 345678888899
Q ss_pred HHHHHHHHHHHhc
Q 003321 336 EDESLSLFCYSAF 348 (830)
Q Consensus 336 ~~e~~~Lf~~~af 348 (830)
.+|-..+++...-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987764
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.10 E-value=0.18 Score=52.37 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..-.++.|.|.+|+||||++.+++.+ ........++|++... +..++...+...+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 34568899999999999999998743 2222234577887765 45566666655443
No 275
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.10 E-value=0.028 Score=56.68 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+........+|+|.|++|.|||||++.+..
T Consensus 24 ~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 24 AALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333346788999999999999999999884
No 276
>PRK06762 hypothetical protein; Provisional
Probab=95.01 E-value=0.019 Score=54.66 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
No 277
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0025 Score=62.70 Aligned_cols=99 Identities=21% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh--hhccCCCCcE
Q 003321 692 LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ--GIGNLIRLEK 769 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~--~l~~l~~L~~ 769 (830)
+.+.+.|+..||. +..+. -...++.|++|.|+-|. +..+. .+..+++|++|+|..| .+..+.+ -+.++++|+.
T Consensus 18 l~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNk-IssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNK-ISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccc-cccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3444555555554 33332 22356666777666543 33332 2556677777777763 3333322 3677788888
Q ss_pred EeccCccCCccCCc-----cccccccCceee
Q 003321 770 IDMRECSQIWSLPK-----SVNSLKSLRQVI 795 (830)
Q Consensus 770 L~l~~~~~l~~lp~-----~~~~l~~L~~l~ 795 (830)
|.|..|+....-+. .+.-|++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888776655443 234466666664
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.91 E-value=0.023 Score=54.59 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN 237 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~ 237 (830)
....+|.+.|++|.||||+|+.+++ .....+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~ 37 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSN 37 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCc
Confidence 3456999999999999999999984 44444543
No 279
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.89 E-value=0.027 Score=58.91 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
+.-+++-|+|++|+||||||.+++- ..... ...++|++..+.+++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~-g~~~vyId~E~~~~~~ 98 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKL-GGTVAFIDAEHALDPV 98 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCCEEEECccccHHHH
Confidence 4567999999999999999999873 23322 3456788887776653
No 280
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.89 E-value=0.061 Score=54.96 Aligned_cols=66 Identities=23% Similarity=0.360 Sum_probs=43.7
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccc---cccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
.|-++|-+. ..-.|.=|+|.+|+|||.||..++-...+. ...+.+++|++-...|....+.+ |++.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 344444322 345689999999999999998876322221 22356788999998999888754 4443
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.87 E-value=0.022 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 282
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.022 Score=55.26 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.+.+|||-|.+|.||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3467999999999999999999984
No 283
>PRK09354 recA recombinase A; Provisional
Probab=94.86 E-value=0.028 Score=59.33 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=38.7
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..|-.+|- +. ..-+++-|+|++|+||||||.+++. ..... ...++|++..+.+++.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~-G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKA-GGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCcEEEECCccchHHH
Confidence 34444443 22 4567999999999999999999873 23332 4566799888777753
No 284
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.83 E-value=0.061 Score=56.73 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=41.7
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhccccccccc---CCceEEEEecCCCCHHHHH
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~l~ 254 (830)
...+-++|.+. ..-.++.|+|.+|+||||||..++-........ ...++|++....+....+.
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~ 148 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence 34455555433 567899999999999999999887321111111 1356799888877877643
No 285
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.82 E-value=0.055 Score=57.33 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccc---cccCCceEEEEecCCCCHHHHHHH
Q 003321 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
.+-++|-+. ..-+++-|+|.+|+|||+|+..++-..... .....+++|++....|.++++.+.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i 180 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI 180 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH
Confidence 333444322 456788899999999999999886222211 122356789999999999887654
No 286
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.82 E-value=0.009 Score=67.97 Aligned_cols=134 Identities=20% Similarity=0.304 Sum_probs=77.2
Q ss_pred cCCCceEEeeeccccccccccccCcCCCCCccceeccccc-cccCccc----cccCCCCCCCEEEeeCcCCCCccc-hhc
Q 003321 640 LKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHC-DDLMKLP----PSICGLQSLKNLSVTNCHSLQELP-ADI 713 (830)
Q Consensus 640 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~lp----~~i~~l~~L~~L~L~~c~~l~~lp-~~i 713 (830)
.++|+.|.+..|....... .......+++|+.|++++| ......+ .....+++|+.|++++|..+...- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 5677777777665433211 2222345788888888873 2222222 223455788888888877544321 222
Q ss_pred C-CCCCCCEEEcccCCCCC--ccchhhcCCCCCcEeccccccccCc--chhhhccCCCCcEEeccCc
Q 003321 714 G-KMKSLQILRLYACPHLR--TLPARICELVCLKYLNISQCVSLSC--LPQGIGNLIRLEKIDMREC 775 (830)
Q Consensus 714 ~-~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~L~~c~~l~~--lp~~l~~l~~L~~L~l~~~ 775 (830)
. .+++|+.|.+.+|..+. .+-.....+++|++|+|++|..+.. +.....++++|+.|.+..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2 36788888877777532 2333345677888888888877632 3333445566555544443
No 287
>PRK06547 hypothetical protein; Provisional
Probab=94.82 E-value=0.025 Score=53.82 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.....+|+|.|++|+||||+|+.+.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 367789999999999999999999853
No 288
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.80 E-value=0.058 Score=52.35 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-..++|+|..|.||||+++.+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999884
No 289
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.32 Score=50.87 Aligned_cols=44 Identities=32% Similarity=0.298 Sum_probs=32.2
Q ss_pred cccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+.|.++.++-|.+.+.- ...-+-|..+|++|.|||-||++|+.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 456666666666655421 13456788999999999999999994
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.75 E-value=0.39 Score=44.66 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=58.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC---CCHHHHHHHHHHhhc----CCC-CCCCCCCcc---
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS---PNVEQLRAKVWGFVS----GCD-SMEPNYVIP--- 274 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~---~~~~~l~~~i~~~l~----~~~-~~~~~~~~~--- 274 (830)
..|-|++..|.||||+|.... .+...+ ..++.++-.-+. .....+++.+ ..+. +.. .....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~--~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLA--LRALGH-GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHH--HHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 467888899999999998876 232222 223444433222 2333333333 1110 000 000011111
Q ss_pred ----cchHHHHhh-cCCcEEEEEeCCCCh--------HhHHHhhh-cCCCceEEEEecccccc
Q 003321 275 ----HWNLQIQSK-LGSRCLVVLDDVWSL--------AVLEQLIF-RVPGCKTLVVSRFKFST 323 (830)
Q Consensus 275 ----~~~~~~~~l-~~kr~LlVlDdv~~~--------~~~~~l~~-~~~gs~iivTtr~~~~~ 323 (830)
.+....+.+ .++-=|||||++-.. +.+-++.. ..++.-+|+|.|+....
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~ 141 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKE 141 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 111122222 456679999998633 33434444 45578999999997643
No 291
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.53 Score=50.53 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=78.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC-----CCCC-CCcccchHH
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS-----MEPN-YVIPHWNLQ 279 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~-----~~~~-~~~~~~~~~ 279 (830)
|=--++|+||.|||++..+++|.-. |+ |.=+.++...+-.+ ++.++........ .+-. +.....+..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd--IydLeLt~v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~ 308 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD--IYDLELTEVKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKK 308 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc--eEEeeeccccCcHH-HHHHHHhCCCCcEEEEeecccccccccccccc
Confidence 4466999999999999999997422 44 33455554444444 4444433221110 0000 000000000
Q ss_pred HHhhcC--Cc-----EEEEEeCCCChHhHHHhhhcCCCceEEEEecccc----cc-----cccceEEccCCCHHHHHHHH
Q 003321 280 IQSKLG--SR-----CLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKF----ST-----VLNDTYEVELLREDESLSLF 343 (830)
Q Consensus 280 ~~~l~~--kr-----~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~----~~-----~~~~~~~l~~L~~~e~~~Lf 343 (830)
.....+ .+ .|=.+|++|+.. -+=||||-|.+.. .| ..+-.+.+..-+.+.-..||
T Consensus 309 ~~~~~~~~~~VTlSGLLNfiDGlwSsc---------g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La 379 (457)
T KOG0743|consen 309 KENFEGDLSRVTLSGLLNFLDGLWSSC---------GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLA 379 (457)
T ss_pred cccccCCcceeehHHhhhhhccccccC---------CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHH
Confidence 000000 00 122344444421 1237766555542 22 34456788889999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH-HHhcCC
Q 003321 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG-ASLREQ 386 (830)
Q Consensus 344 ~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~-~~L~~~ 386 (830)
..+.-.+. + ..++.+|.+...|.-+.=.-+| .++..+
T Consensus 380 ~nYL~~~~---~---h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 380 SNYLGIEE---D---HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred HHhcCCCC---C---cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 88864332 1 1256666665555544433333 344444
No 292
>PRK03839 putative kinase; Provisional
Probab=94.70 E-value=0.023 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
No 293
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.69 E-value=0.1 Score=54.30 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccc-cccCCceEEEEec
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVT-SYFNNRILFLTVS 245 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~-~~F~~~~~wv~v~ 245 (830)
..++|+++|++|+||||++..++.....+ ..+ .+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~--~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK--KVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC--eEEEEECC
Confidence 45799999999999999999987432222 123 45456554
No 294
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.67 E-value=0.011 Score=67.14 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=76.4
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeeccc-c-cCc----cCCCccccCCCceEEeeecccccccccccc
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKV-S-ISQ----LPKSSIPLKKMQKISFVLCKINNSLDQSVV 662 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~-~-i~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 662 (830)
.++.|+.|.+.++...... ........+++|+.|+++++ . +.. .+.....+.+|+.|+++.|..... ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd--~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD-SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD--IGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChh-hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--hhHH
Confidence 4677888877655322110 01133557789999999873 1 111 112233457888888887764211 1111
Q ss_pred CcCCCCCccceeccccccccCc--cccccCCCCCCCEEEeeCcCCCCc--cchhcCCCCCCCEEEccc
Q 003321 663 DLPKTLPCLTELTFDHCDDLMK--LPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMKSLQILRLYA 726 (830)
Q Consensus 663 ~~~~~~~~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~ 726 (830)
.+...+++|+.|.+.+|..++. +-.....+++|++|+|++|..+.. +.....++++|+.|.+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 1223477888888887765332 223345678888999888887643 333334456655555444
No 295
>PRK06217 hypothetical protein; Validated
Probab=94.66 E-value=0.053 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 296
>PRK04040 adenylate kinase; Provisional
Probab=94.64 E-value=0.026 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.11 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.++.++|+.|+||||++..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999984
No 298
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.29 Score=54.36 Aligned_cols=178 Identities=11% Similarity=0.063 Sum_probs=97.0
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc--ccc-CCceEEEEe--cCCCCHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--SYF-NNRILFLTV--SQSPNVEQLRAKVW 258 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~--~~F-~~~~~wv~v--~~~~~~~~l~~~i~ 258 (830)
.++|-+.-...|.+.+....-..-.-..|+-|+||||+|+-+..-..-. ... +|+.+-.|- .....++-+.-+-+
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaA 96 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAA 96 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhh
Confidence 4588888888888888654444556688999999999999876321111 001 111111110 00000000000000
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCC--hHhHHHhhhcC----CCceEEEEecccc-cc---
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWS--LAVLEQLIFRV----PGCKTLVVSRFKF-ST--- 323 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~~----~gs~iivTtr~~~-~~--- 323 (830)
....++..+.+.+.. .++.=..|+|.|.. ...|..++... +....|+.|++.. +.
T Consensus 97 ----------Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 97 ----------SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ----------hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 111223333333332 45556788999984 46788887642 2555555555543 32
Q ss_pred -cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH
Q 003321 324 -VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL 374 (830)
.....|....++.++-...+...+-.+.- ...++...-|++..+|..-
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 44577999999999888887766533322 1223456666676666544
No 299
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.0097 Score=56.18 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc-hhhc-CCCCCcEeccccccccCcch-hhhccCCCCcEE
Q 003321 694 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP-ARIC-ELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKI 770 (830)
Q Consensus 694 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L 770 (830)
.++.++-+++....+=-+.+.+++.++.|.+.+|..+...- .-++ -.++|+.|+|++|+.+++-- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35566666654333333456666777777777776654321 0111 24567777777776665432 235556666666
Q ss_pred eccC
Q 003321 771 DMRE 774 (830)
Q Consensus 771 ~l~~ 774 (830)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5554
No 300
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.053 Score=51.96 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..+|+|-||=|+||||||+.+.++.. | .++.-.+.+++=++.+..++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~----~--~~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG----F--KVFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC----C--ceeeecccCChHHHHHHHhHH
Confidence 46899999999999999999995322 2 344555666655555555443
No 301
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.57 E-value=0.24 Score=48.33 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=62.9
Q ss_pred cccccchhhHHHHHHH---hcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 184 MGIGMALGKNKVKEMV---IGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L---~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
.++|.+..++.+.+-- .+..+..-|-+||--|.||++|++++.+ .+....-. .|.|.+. ++. -+-.|+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr---LVEV~k~-dl~-~Lp~l~~~ 133 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR---LVEVDKE-DLA-TLPDLVEL 133 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe---EEEEcHH-HHh-hHHHHHHH
Confidence 3466666665555432 2234566788999999999999999995 44444432 4555432 111 11222222
Q ss_pred hcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh---HhHHHhhhc-------CCCceEEEEeccc
Q 003321 261 VSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL---AVLEQLIFR-------VPGCKTLVVSRFK 320 (830)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~---~~~~~l~~~-------~~gs~iivTtr~~ 320 (830)
+. ...+||.|..||..-+ +....++.. .|...++..|.++
T Consensus 134 Lr--------------------~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 134 LR--------------------ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred Hh--------------------cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 21 1468999999999733 334444432 2444555555544
No 302
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.56 E-value=0.15 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..-.+++|+|..|.|||||++.+..-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999999853
No 303
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.42 Score=51.98 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=33.3
Q ss_pred cccccch---hhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhcccc
Q 003321 184 MGIGMAL---GKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQ 230 (830)
Q Consensus 184 ~~vgr~~---~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~ 230 (830)
.+-|-++ +.++|+++|.+. .=++=|.++|++|.|||-||++|+-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 3455555 456666677543 2256788999999999999999986433
No 304
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.44 E-value=0.023 Score=49.36 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999874
No 305
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.42 E-value=0.025 Score=55.66 Aligned_cols=21 Identities=52% Similarity=0.801 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|++|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 306
>PRK00625 shikimate kinase; Provisional
Probab=94.32 E-value=0.029 Score=53.40 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.++||+|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 307
>PTZ00035 Rad51 protein; Provisional
Probab=94.31 E-value=0.13 Score=54.78 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhccccc---ccccCCceEEEEecCCCCHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV---TSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~---~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
..+-++|-+. ..-.++.|+|.+|.|||||+..++-.... ...-...++|++-...++++.+..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 4444455332 45689999999999999999988632221 111234567998888788777543
No 308
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.30 E-value=0.026 Score=56.21 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|||.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 309
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.12 Score=52.73 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
+.-+++=|+|+.|.||||+|.+++ -.++..-. .++|++..+.+++..+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~--~~aq~~g~-~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLV--ANAQKPGG-KAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHH--HHhhcCCC-eEEEEeCCCCCCHHHHHH
Confidence 456789999999999999999987 33444333 566999999999877543
No 310
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.032 Score=51.51 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 003321 207 VLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~ 226 (830)
.|+|.|.||+||||+|+.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999885
No 311
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.27 E-value=0.029 Score=54.00 Aligned_cols=22 Identities=50% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 312
>PHA00729 NTP-binding motif containing protein
Probab=94.27 E-value=0.057 Score=53.18 Aligned_cols=26 Identities=50% Similarity=0.629 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+...|.|.|.+|+||||||..+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35567899999999999999999853
No 313
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.27 E-value=0.023 Score=50.07 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccC
Q 003321 208 LGICGIGGSGKTTLALEVCRDHQVTSYFN 236 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~~~~~~~F~ 236 (830)
|-++|.+|+||||+|+.+. ......|.
T Consensus 2 vLleg~PG~GKT~la~~lA--~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALA--RSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHH--HHTT--EE
T ss_pred EeeECCCccHHHHHHHHHH--HHcCCcee
Confidence 5689999999999999999 45666664
No 314
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.25 E-value=0.034 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++.|+|++|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 315
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.25 E-value=0.092 Score=50.27 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999884
No 316
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0021 Score=63.26 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=67.2
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCC
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 668 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 668 (830)
.+.+.+.|++.+++ +.+++.|..|+.|++|.|+-|.|+.|. .+..+++|+.|.|+.|.+...-. ....+++
T Consensus 17 dl~~vkKLNcwg~~-----L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldE---L~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-----LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDE---LEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCC-----ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHH---HHHHhcC
Confidence 34566677776665 344566788999999999999888774 35667888888888776543211 1223567
Q ss_pred CccceeccccccccCcccc-----ccCCCCCCCEEE
Q 003321 669 PCLTELTFDHCDDLMKLPP-----SICGLQSLKNLS 699 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~-----~i~~l~~L~~L~ 699 (830)
|+|+.|-|..|...+.-+. .+.-|++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888777654443332 244567777775
No 317
>PRK10867 signal recognition particle protein; Provisional
Probab=94.17 E-value=0.16 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998888763
No 318
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.043 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999985
No 319
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.15 E-value=0.84 Score=48.40 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCCh--HhHHHhh---h-cCCCceEEEEecccc-cc----cccceEEccCCCHHHHHHHHHHH
Q 003321 285 GSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 285 ~kr~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtr~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
+++-.+|+|++... +.-..+. . ..++..+|++|.+.. +. .....+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 33444556877743 2222222 2 223566777776654 22 23467889999999998887653
No 320
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.13 E-value=0.049 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999984
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.12 E-value=0.077 Score=54.41 Aligned_cols=26 Identities=38% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+..+|.|+|.+|.|||||...+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999985
No 322
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.11 E-value=0.032 Score=54.06 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 323
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.10 E-value=0.17 Score=50.72 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC-----CCCHHHHHHHHHHhhcCCCCC------CCCC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-----SPNVEQLRAKVWGFVSGCDSM------EPNY 271 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-----~~~~~~l~~~i~~~l~~~~~~------~~~~ 271 (830)
..-.++++||.+|.||||+|+.+.. .-.--...+ +..-.+ .....+-..++++.++..... +-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILG---LEEPTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4556999999999999999999983 333223344 222111 111223334444544322110 0111
Q ss_pred CcccchHHHHhhcCCcEEEEEeCCCC
Q 003321 272 VIPHWNLQIQSKLGSRCLVVLDDVWS 297 (830)
Q Consensus 272 ~~~~~~~~~~~l~~kr~LlVlDdv~~ 297 (830)
...+--.+.+.+.-+.-|+|.|..-+
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchh
Confidence 11111123344577889999998764
No 324
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.07 E-value=3.1 Score=41.75 Aligned_cols=219 Identities=17% Similarity=0.135 Sum_probs=115.6
Q ss_pred cccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---c-ccccCCceEEEEecCC--------------
Q 003321 186 IGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---V-TSYFNNRILFLTVSQS-------------- 247 (830)
Q Consensus 186 vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---~-~~~F~~~~~wv~v~~~-------------- 247 (830)
.++++....++.+.. ..+..-.-++|++|.||-|.+..+.++-- + +-+-+.+. |.+-+..
T Consensus 16 ~~~~e~~~~Lksl~~-~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t-~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 16 IYHEELANLLKSLSS-TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT-FTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred ccHHHHHHHHHHhcc-cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE-EecCCCceEEEEEecccceEE
Confidence 455555555555554 46678899999999999998887764311 0 00111122 3222211
Q ss_pred -------CCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcE-EEEEeCCCCh--HhHHHhhh----cCCCceE
Q 003321 248 -------PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRC-LVVLDDVWSL--AVLEQLIF----RVPGCKT 313 (830)
Q Consensus 248 -------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~-LlVlDdv~~~--~~~~~l~~----~~~gs~i 313 (830)
.....+.++++++.......+. -..+.| ++|+-.+++. +.-..++. ....+|+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 1123345555555543322111 112334 4556555543 22233332 2346788
Q ss_pred EEEecccc--cc---cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcC---
Q 003321 314 LVVSRFKF--ST---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLRE--- 385 (830)
Q Consensus 314 ivTtr~~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~--- 385 (830)
|+..-+.. +. ...-.++++..+++|-...+++.+-.+.-.- ..+++.+|+++++|.---+..+-...+-
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 77644332 22 2234578999999999999988764333211 1568999999999875444333333321
Q ss_pred ----C----ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcC
Q 003321 386 ----Q----PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYL 423 (830)
Q Consensus 386 ----~----~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 423 (830)
+ +..+|+-++........ .+.....+..+-..=|+-|
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~-~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVIL-KEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 1 24579988876543211 1111334444444445444
No 325
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.07 E-value=0.1 Score=55.39 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=45.6
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccc---cccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
...+-++|.+. ..-.++-|+|.+|+|||+||..++-..... ..-...++|++....|.++++.+ +++.+
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~ 181 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERF 181 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHc
Confidence 34445555433 456788999999999999999877321111 11223678999999999887654 34443
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.05 E-value=0.31 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....||.++|.+|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998874
No 327
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.04 E-value=0.04 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|+|+|++|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999985
No 328
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.04 E-value=0.043 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+...|.++|++|+||||+|+.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 329
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.03 E-value=0.07 Score=47.92 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..-.+|.+.|.-|.||||+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999854
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.02 E-value=0.16 Score=54.79 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=34.2
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
...+-++|-.. ..-.++.|.|.+|+|||||+.+++.. .... ...++|++..+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~-g~~VlYvs~EE 120 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKR-GGKVLYVSGEE 120 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhc-CCeEEEEECCc
Confidence 34444555322 44679999999999999999998843 2222 23566776554
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.02 E-value=0.081 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=29.1
Q ss_pred hhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 190 LGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 190 ~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
...+++.+.+. + +++.++|.+|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~---~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777774 3 89999999999999999999853
No 332
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.01 E-value=0.043 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|.|+|..|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999964
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.15 Score=55.05 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhccccccc-ccCCceEEEEecC
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQ 246 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~ 246 (830)
..++|.++|+.|+||||.+..++....... +-...+..++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 467999999999999999998874322211 1223454555553
No 334
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.99 E-value=0.097 Score=58.05 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC-HHHHHHHHHHhhcCCCCCCCCCC
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN-VEQLRAKVWGFVSGCDSMEPNYV 272 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~-~~~l~~~i~~~l~~~~~~~~~~~ 272 (830)
+++++|..-..-.-.+|+|++|+|||||++.+.+. ....+-+..++.+-|.+.+. +.++.+.+ .+.......+.
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~-i~~n~~~~~~ivvLIgERpeEVtdm~rsV----kgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANA-ITTNNPECHLMVVLVDERPEEVTDMQRSV----KGEVIASTFDR 479 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHH-HhhcCCCeEEEEEEEeCchhhHHHHHHhc----cceEEEECCCC
Confidence 34555543344567889999999999999999863 21223333444555555433 33333322 11111111111
Q ss_pred cccc--------hHHHHhh--cCCcEEEEEeCCCCh
Q 003321 273 IPHW--------NLQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 273 ~~~~--------~~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
.... ....+.+ .++.+||++|++...
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 1111 1112222 789999999998643
No 335
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.96 E-value=0.073 Score=51.76 Aligned_cols=42 Identities=26% Similarity=0.477 Sum_probs=28.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccc-cCCceEEEEecCCCCHH
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFLTVSQSPNVE 251 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~ 251 (830)
.|+|+|-||+||||+|..+.- .-..++ | .++-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~-~l~~~~~~--~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK-RLLSKGGY--NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH-HHHhcCCc--eEEEEeCCCCCChH
Confidence 689999999999999998552 122222 4 35556666665543
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.95 E-value=0.16 Score=53.88 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCCHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..-+++-|+|.+|+|||++|.+++-....... -...++|++....++.+.+.+.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 45679999999999999999998743221111 1236779999888888876544
No 337
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.93 E-value=0.038 Score=53.16 Aligned_cols=21 Identities=52% Similarity=0.794 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 338
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.71 Score=46.49 Aligned_cols=44 Identities=32% Similarity=0.319 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++-|.+..++.+++.+.- ....+-|.++|++|.||+-||++|+.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 567788888888877532 13467899999999999999999994
No 339
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.88 E-value=0.064 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
...-+|||.|..|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999998775
No 340
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.88 E-value=0.056 Score=50.01 Aligned_cols=23 Identities=48% Similarity=0.557 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..||-|.|.+|.||||||+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 341
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.83 E-value=0.3 Score=57.13 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=64.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KL 284 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~ 284 (830)
+-|.++|++|.|||++|+.+.+. ..-.| +.++.+. +... ..+. ........+.. ..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f----~~is~~~------~~~~----~~g~-------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF----FTISGSD------FVEM----FVGV-------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE----EEEehHH------hHHh----hhcc-------cHHHHHHHHHHHHh
Confidence 34899999999999999999853 22222 2232221 1110 0000 00111111211 23
Q ss_pred CCcEEEEEeCCCChH----------------hHHHhhh---cC---CCceEEEEeccccc---c-----cccceEEccCC
Q 003321 285 GSRCLVVLDDVWSLA----------------VLEQLIF---RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELL 334 (830)
Q Consensus 285 ~kr~LlVlDdv~~~~----------------~~~~l~~---~~---~gs~iivTtr~~~~---~-----~~~~~~~l~~L 334 (830)
..+++|++|+++... .+..+.. ++ .+.-+|.||..... + ..+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 567899999987531 1223321 22 23344445554332 1 23467888889
Q ss_pred CHHHHHHHHHHHh
Q 003321 335 REDESLSLFCYSA 347 (830)
Q Consensus 335 ~~~e~~~Lf~~~a 347 (830)
+.++-.+++..+.
T Consensus 323 d~~~R~~Il~~~~ 335 (644)
T PRK10733 323 DVRGREQILKVHM 335 (644)
T ss_pred CHHHHHHHHHHHh
Confidence 9888888888776
No 342
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.83 E-value=0.1 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999984
No 343
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.78 E-value=0.058 Score=55.58 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+++.+.. .-+-+-++|++|+|||++++....
T Consensus 23 ~~ll~~l~~--~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLS--NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHH--CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcEEEECCCCCchhHHHHhhhc
Confidence 445666653 344668999999999999999874
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.76 E-value=0.042 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 345
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=93.76 E-value=0.27 Score=44.39 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=48.0
Q ss_pred CCCceEEEEEcCCCChHHHHH--HHHhcccccccccCCceEEEEecCCCCHHHHHHHHH-HhhcCCCCCCCCCCcccchH
Q 003321 202 RDDLSVLGICGIGGSGKTTLA--LEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW-GFVSGCDSMEPNYVIPHWNL 278 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA--~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~-~~l~~~~~~~~~~~~~~~~~ 278 (830)
.++.++|||-||+-+|||.-+ ..||.+ +- |.-+|.. ++++-+ .++...+
T Consensus 51 ~~Gh~lIGiRGmPRVGKTEsivAasVcAn---------Kr-W~f~SST-----likQTvRs~L~~dE------------- 102 (192)
T PF11868_consen 51 EEGHKLIGIRGMPRVGKTESIVAASVCAN---------KR-WLFLSST-----LIKQTVRSQLIEDE------------- 102 (192)
T ss_pred hcCceEEeecCCCccCchhHHHHHhhhcC---------ce-EEEeeHH-----HHHHHHHHHhhhcc-------------
Confidence 588999999999999999754 445532 22 8888743 333222 2222111
Q ss_pred HHHhhcCCcEEEEEeCCCC-----hHhHHHhhh--cCCCceEE
Q 003321 279 QIQSKLGSRCLVVLDDVWS-----LAVLEQLIF--RVPGCKTL 314 (830)
Q Consensus 279 ~~~~l~~kr~LlVlDdv~~-----~~~~~~l~~--~~~gs~ii 314 (830)
-+.....|+|++-+ +..|.-+.. ..|..|||
T Consensus 103 -----~~~~~ifIIDGivSt~r~~e~H~~Lvreim~lP~~KVv 140 (192)
T PF11868_consen 103 -----YNENNIFIIDGIVSTRRSNERHWQLVREIMRLPATKVV 140 (192)
T ss_pred -----cCcCcEEEEeeeeeeccCCHHHHHHHHHHHcCCCceee
Confidence 13456788899853 345655543 45666654
No 346
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.73 E-value=0.049 Score=52.28 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 347
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.69 E-value=0.035 Score=32.39 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.8
Q ss_pred ccCeeeecccccCccCCCccc
Q 003321 619 NLRSLWLEKVSISQLPKSSIP 639 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~~~~ 639 (830)
+|++|++++|.++.+|+++..
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 578899999988888877543
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.66 E-value=0.18 Score=55.36 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
....+|.++|.+|+||||.|..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999999853
No 349
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.046 Score=49.75 Aligned_cols=22 Identities=50% Similarity=0.747 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+|.|-|++|.||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 7899999999999999999853
No 350
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.64 E-value=0.15 Score=54.85 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=32.7
Q ss_pred ccccccchhhHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGR-------------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..+..+.-.+... -..+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 44577777766665555321 1246789999999999999999984
No 351
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.62 E-value=0.18 Score=53.56 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCCHHHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..+-++|-+. ..-.++-|+|.+|+|||++|.+++-....... -...++|++....+++..+.+.+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 3444444322 45679999999999999999998733211111 12367799999888888775543
No 352
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.06 Score=62.26 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=80.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc---ccccccc-CCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD---HQVTSYF-NNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~---~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..++||+.++.++++.|....+- --.++|.+|+|||++|.-++.. ..|-... +.+++-.+++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN-NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN-NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC-CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-------------
Confidence 34699999999999999754211 2236899999999988777631 1111111 1122111111
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-----------HhHHHhhhcC-CC--ceEEEEeccccc-
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-----------AVLEQLIFRV-PG--CKTLVVSRFKFS- 322 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-----------~~~~~l~~~~-~g--s~iivTtr~~~~- 322 (830)
.-+.+... .++-.+.++..++.+ ..++..|++|.+... +.-+-+++.. .| -.|=.||-++--
T Consensus 236 ~LvAGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 236 SLVAGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred HHhccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 11111111 112233344444444 344899999998742 1222233322 23 344456654321
Q ss_pred ------c--cccceEEccCCCHHHHHHHHHH
Q 003321 323 ------T--VLNDTYEVELLREDESLSLFCY 345 (830)
Q Consensus 323 ------~--~~~~~~~l~~L~~~e~~~Lf~~ 345 (830)
+ ...+.+.|+..+.+++..+++-
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 1 3456788888999999888764
No 353
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.59 E-value=0.055 Score=53.01 Aligned_cols=24 Identities=46% Similarity=0.603 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..-.++||+|.+|.||||||+.+.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh
Confidence 345689999999999999999997
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.59 E-value=0.046 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|.+.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999984
No 355
>PRK13949 shikimate kinase; Provisional
Probab=93.58 E-value=0.049 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+-|.|+|++|.||||+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999984
No 356
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.57 E-value=0.24 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|.|.|.+|.||||+|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999874
No 357
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.56 E-value=0.053 Score=49.53 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|+|+|++|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999984
No 358
>PHA02774 E1; Provisional
Probab=93.54 E-value=0.26 Score=55.08 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=29.1
Q ss_pred hhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 191 GKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 191 ~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-...+..++....+..-+.|+|++|.|||.+|..+.+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3456666665445567999999999999999999984
No 359
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.54 E-value=0.06 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+|+|+|++|+||||||+.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 360
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.53 E-value=0.21 Score=52.77 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
.-..+.|+|..|.||||+++.+... +... .+++.+.-........ ........... ................+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~--~~~~--~~iv~ied~~El~~~~--~~~~~l~~~~~-~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE--IPKD--ERIITIEDTREIFLPH--PNYVHLFYSKG-GQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc--CCcc--ccEEEEcCccccCCCC--CCEEEEEecCC-CCCcCccCHHHHHHHHh
Confidence 4579999999999999999998843 2221 2232221000000000 00000000000 00001111112222334
Q ss_pred cCCcEEEEEeCCCChHhHHHhhhcCCCceE-EEEec
Q 003321 284 LGSRCLVVLDDVWSLAVLEQLIFRVPGCKT-LVVSR 318 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~~~~~~l~~~~~gs~i-ivTtr 318 (830)
+...=.+|+|.+...+.++.+.....|... +.|+-
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~T~H 251 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAVNTGHPGSITTLH 251 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 667778999999998877766554455544 44443
No 361
>PRK13947 shikimate kinase; Provisional
Probab=93.52 E-value=0.049 Score=52.06 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 362
>PRK05439 pantothenate kinase; Provisional
Probab=93.52 E-value=0.087 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...-+|||.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999999998873
No 363
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.49 E-value=1.6 Score=50.25 Aligned_cols=47 Identities=19% Similarity=0.080 Sum_probs=37.0
Q ss_pred cccccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
...++|....+.++.+.+..- ..-..|.|+|.+|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 346799999888888887532 33446779999999999999999853
No 364
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.064 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHh
Q 003321 205 LSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.+|+.|+|.+|+||||+.+.+-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~ 25 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIAL 25 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHH
Confidence 5799999999999999998876
No 365
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.13 Score=54.28 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
.-.+|.|=|-+|||||||..+++. +..+.- ++++|+-.+ +..++.- -+..+.-....-.-.....++.+.+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~--~vLYVsGEE--S~~Qikl-RA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG--KVLYVSGEE--SLQQIKL-RADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC--cEEEEeCCc--CHHHHHH-HHHHhCCCccceEEehhcCHHHHHHHH
Confidence 456999999999999999999985 343333 565665444 4443321 122332111000000111223344444
Q ss_pred -cCCcEEEEEeCCCC
Q 003321 284 -LGSRCLVVLDDVWS 297 (830)
Q Consensus 284 -~~kr~LlVlDdv~~ 297 (830)
..+.-++|+|-+..
T Consensus 165 ~~~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQEKPDLVVIDSIQT 179 (456)
T ss_pred HhcCCCEEEEeccce
Confidence 57889999999874
No 366
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.45 E-value=0.067 Score=45.86 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.-..++|+|++|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44689999999999999999976
No 367
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.45 E-value=0.068 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999999999984
No 368
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.36 E-value=0.062 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999974
No 369
>PRK14530 adenylate kinase; Provisional
Probab=93.36 E-value=0.06 Score=53.67 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 370
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.33 E-value=0.065 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcccc
Q 003321 208 LGICGIGGSGKTTLALEVCRDHQ 230 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~~~ 230 (830)
|.|+|..|+|||||.+.+++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999986543
No 371
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.33 E-value=0.096 Score=51.83 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.4
Q ss_pred cCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 201 GRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 201 ~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..++++|+++|..|+|||||..++.+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999999985
No 372
>PLN02348 phosphoribulokinase
Probab=93.31 E-value=0.095 Score=55.92 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.......+..-+|+|.|.+|.||||+|+.+.+
T Consensus 40 ~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 40 VVALAADDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred HHhhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333346678999999999999999999984
No 373
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.28 E-value=0.17 Score=55.77 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWG 259 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~ 259 (830)
..-.-++|+|.+|+|||||+..+.+... +.+-+ .++++-+++. ..+.++...+..
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~d-v~V~~liGER~rEv~ef~~~~~~ 196 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSG-SSVFAGVGERSREGHELYHEMKE 196 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCC-EEEEEcCCcchHHHHHHHHHHHh
Confidence 3456799999999999999998885322 22333 3445666554 345566666554
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.24 E-value=0.08 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999985
No 375
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.15 E-value=0.071 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+.|.|+|+.|.||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35699999999999999999985
No 376
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.14 E-value=0.28 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+|.|.|..|.||||+++.+.+
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHh
Confidence 3456899999999999999998864
No 377
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.12 E-value=0.077 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 378
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.09 E-value=0.046 Score=31.93 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=7.8
Q ss_pred CCEEEeeCcCCCCccchhc
Q 003321 695 LKNLSVTNCHSLQELPADI 713 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i 713 (830)
|++|+|++| .++.+|.++
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 444444444 233444433
No 379
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.06 E-value=0.13 Score=53.84 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHH
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
.+++.+.|-||+||||+|.+.. -...... .++.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A--~~lA~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATA--VKLAESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHH--HHHHHcC-CcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999855 2333333 34667777777676665543
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.04 E-value=0.24 Score=53.15 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCc
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVI 273 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 273 (830)
.+.+++. ..-..|.|.|+.|.||||+.+.+.+ .+......++ +.+.+.... ........+.... .+ ...
T Consensus 113 ~l~~~~~--~~~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i--~tiEdp~E~--~~~~~~~~i~q~e-vg--~~~ 181 (343)
T TIGR01420 113 VLRELAE--RPRGLILVTGPTGSGKSTTLASMID--YINKNAAGHI--ITIEDPIEY--VHRNKRSLINQRE-VG--LDT 181 (343)
T ss_pred HHHHHHh--hcCcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEE--EEEcCChhh--hccCccceEEccc-cC--CCC
Confidence 3444443 3357899999999999999999874 2333344444 233332111 0000000000000 00 011
Q ss_pred ccchH-HHHhhcCCcEEEEEeCCCChHhHHH-hhhcCCCceEEEEec
Q 003321 274 PHWNL-QIQSKLGSRCLVVLDDVWSLAVLEQ-LIFRVPGCKTLVVSR 318 (830)
Q Consensus 274 ~~~~~-~~~~l~~kr~LlVlDdv~~~~~~~~-l~~~~~gs~iivTtr 318 (830)
..+.. ....++...=.|++|.+.+.+.+.. +.....|-.++.|+-
T Consensus 182 ~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 182 LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLH 228 (343)
T ss_pred cCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 11222 2233567888999999998887665 334445655444443
No 381
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.02 E-value=0.24 Score=50.31 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhccccc--ccccCCceEEEEecCCC-CHHHHHHHHHH
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQV--TSYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~--~~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (830)
.-.-++|.|-+|+|||+|+..+.++..+ +.+-+ .++++-+++.. ...++...+.+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~-v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENF-AVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCC-EEEEEEeccccHHHHHHHHHhhh
Confidence 3457899999999999999998865431 11223 34477777654 45666666554
No 382
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.01 E-value=0.25 Score=54.05 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=48.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCC--CCCCCCCcccch---
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCD--SMEPNYVIPHWN--- 277 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~--~~~~~~~~~~~~--- 277 (830)
..-..++|+|..|+|||||++.+..... -+..+++..-....++.++....+....... .....+.....+
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 3456899999999999999998874322 1223334332234455554444433321110 000111111101
Q ss_pred -----HHHHhh--cCCcEEEEEeCCCCh
Q 003321 278 -----LQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 278 -----~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
...+.+ +++.+|+++||+...
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 111122 689999999998743
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.084 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-.++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999964
No 384
>PRK13948 shikimate kinase; Provisional
Probab=93.01 E-value=0.081 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+.|.++|+.|+||||+++.+.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 385
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.97 E-value=0.067 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+....|.++||+|.||||..++++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45668889999999999999999854
No 386
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.97 E-value=0.61 Score=49.68 Aligned_cols=44 Identities=25% Similarity=0.073 Sum_probs=34.6
Q ss_pred cccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|......++.+.+..- ..-.-|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3688888888888877432 3345688999999999999999974
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.96 E-value=0.066 Score=49.74 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999884
No 388
>PRK10536 hypothetical protein; Provisional
Probab=92.94 E-value=0.14 Score=51.43 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=36.4
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN 236 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~ 236 (830)
.+.++......+..++.+ ..++.+.|++|.|||+||.++..+.-..+.|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~ 105 (262)
T PRK10536 56 PILARNEAQAHYLKAIES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVD 105 (262)
T ss_pred cccCCCHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee
Confidence 346677777788887754 34999999999999999999875322234454
No 389
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.94 E-value=0.29 Score=54.37 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=35.1
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (830)
...+-++|-+. ..-.++.|.|.+|+|||||+.+++.... +. ..+++|++..+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~--g~~vlYvs~Ees 119 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-AA--GGKVLYVSGEES 119 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-hc--CCeEEEEEcccc
Confidence 34555555332 4467999999999999999999985322 12 235668776543
No 390
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.93 E-value=0.074 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 391
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.93 E-value=0.32 Score=46.08 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=29.5
Q ss_pred cccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 186 IGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 186 vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||....+.++++.+... ....-|-|+|..|+||+.+|+.+++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 56666777777776432 2234566999999999999999996
No 392
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.93 E-value=0.21 Score=54.77 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHhhcCCCC---CCCCCCcccc--
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDS---MEPNYVIPHW-- 276 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~---~~~~~~~~~~-- 276 (830)
..-.-++|.|.+|+|||||+..+... .....+..++++-+++.. .+.++...+...=..... ....+.....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34467899999999999999988643 222213344466666543 455666666543110000 0011111111
Q ss_pred ---------hHHHHhhcCCcEEEEEeCCCCh
Q 003321 277 ---------NLQIQSKLGSRCLVVLDDVWSL 298 (830)
Q Consensus 277 ---------~~~~~~l~~kr~LlVlDdv~~~ 298 (830)
...+..-+++++||++|++...
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1112212789999999999743
No 393
>PRK14527 adenylate kinase; Provisional
Probab=92.90 E-value=0.086 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
...+|.|+|++|.||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999843
No 394
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.87 E-value=0.28 Score=54.03 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccc-cccccCCceEEEEec
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVS 245 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~ 245 (830)
.+++.++|++|+||||++..+..... .... .++..++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECC
Confidence 46999999999999999988763222 1222 245566554
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.86 E-value=0.4 Score=45.43 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=30.5
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 208 LGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
+.|.|.+|.|||++|.++... ...+++++.-.+.++. ++.+.|..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHH
Confidence 678999999999999998732 2234557766666654 34444443
No 396
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.83 E-value=0.087 Score=54.98 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
+.-+++-|+|+.|+||||||.++.. ..+.. +..++|++....+++..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~-g~~~a~ID~e~~ld~~~ 97 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQ-GGICAFIDAEHALDPEY 97 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHT-T-EEEEEESSS---HHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcc-cceeEEecCcccchhhH
Confidence 3457999999999999999999884 33322 45567999888777644
No 397
>PRK13975 thymidylate kinase; Provisional
Probab=92.82 E-value=0.085 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999984
No 398
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.81 E-value=0.065 Score=50.75 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999984
No 399
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.80 E-value=0.12 Score=57.84 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+++.+|+|.|++|.||||||+.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHh
Confidence 5678999999999999999999984
No 400
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.77 E-value=0.2 Score=54.00 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=34.3
Q ss_pred cccccccchhhHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 182 NLMGIGMALGKNKVKEMVIGR-------------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..++|.+..+..+...+... -..+-|.++|++|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 345677777777777666420 1146789999999999999999984
No 401
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.76 E-value=0.11 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.-|+|+|+.|+|||||.+.+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3456799999999999999999953
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.73 E-value=0.24 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++.++.++|.+|+||||.|..++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999999988874
No 403
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.15 Score=49.68 Aligned_cols=45 Identities=29% Similarity=0.258 Sum_probs=34.5
Q ss_pred cccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+-|.+..+.++.+...- -+..+=|.++|++|.|||-||++|+|+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345667777777766521 167788899999999999999999975
No 404
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.66 E-value=0.22 Score=55.41 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=35.2
Q ss_pred hhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 191 GKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 191 ~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
....+-++|-+. ..-.++.|.|.+|+|||||+.++... .... ...++|++..+
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKN-QMKVLYVSGEE 132 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCcEEEEECcC
Confidence 345555555332 45679999999999999999998742 2222 23566776654
No 405
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.66 E-value=0.08 Score=49.44 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
||+|+|+.|+|||||+.++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 406
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.65 E-value=0.11 Score=56.91 Aligned_cols=42 Identities=10% Similarity=-0.130 Sum_probs=33.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++||++.++.+...+.. -.-|-+.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aala---g~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHcc---CCCEEEECCCChhHHHHHHHHHH
Confidence 3468888888887777753 34577999999999999999984
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.62 E-value=0.34 Score=51.52 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
.+.++++++|+.|+||||++..++... .... .++.+++...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDt 244 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDT 244 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCc
Confidence 356899999999999999999988432 1222 3455666654
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=0.097 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999984
No 409
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.59 E-value=0.086 Score=49.89 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=16.8
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.51 E-value=0.33 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988873
No 411
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.51 E-value=0.088 Score=47.15 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
.+-|-|.|.+|+||||+|.++.. .+.. -|+++|+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae------~~~~--~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE------KTGL--EYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH------HhCC--ceEehhh
Confidence 34688999999999999999983 2222 2777774
No 412
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.49 E-value=0.12 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+.|.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999999974
No 413
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.48 E-value=0.25 Score=53.78 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHhhcCCCC---CCCCCCcccch-
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDS---MEPNYVIPHWN- 277 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~---~~~~~~~~~~~- 277 (830)
..-..++|+|..|+|||||++.+++... .+..| .+-+++.. .+.++...++..-..... ....+.....+
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~V-i~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIV-VGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCCC----CCEEE-EEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 3456899999999999999999985321 13333 45565543 345555555432110000 00111111111
Q ss_pred -------HHHHhh--cCCcEEEEEeCCCCh
Q 003321 278 -------LQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 278 -------~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
...+.. .++++|+++||+...
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 111222 689999999999743
No 414
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.47 E-value=0.092 Score=49.72 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999854
No 415
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.47 E-value=0.14 Score=53.79 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=29.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
+++.+.|-||+||||+|.+..- ...+. ..+++.++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~-G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARR-GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHT-TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhC-CCCeeEeecCCCccHHHHh
Confidence 6899999999999999987662 22222 2356566665555544433
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.46 E-value=0.1 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-.+++|+|..|.|||||.+.++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3468999999999999999999853
No 417
>PRK13946 shikimate kinase; Provisional
Probab=92.46 E-value=0.093 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+.|.++|++|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 418
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.42 E-value=0.1 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+++|+|++|.||||+++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 419
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.40 E-value=0.19 Score=50.06 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=25.2
Q ss_pred HHHHHHHhc-CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 193 NKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 193 ~~l~~~L~~-~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++++.+.. ..+..+|||.|+||+||+||.-.+..
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 344444443 35678999999999999999998874
No 420
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.40 E-value=0.1 Score=50.48 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccccc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF 235 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F 235 (830)
.++|.|+|+.|+|||||++.+.. ....+|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hccccc
Confidence 47899999999999999999984 444555
No 421
>PLN02200 adenylate kinase family protein
Probab=92.40 E-value=0.11 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 422
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.39 E-value=0.59 Score=52.21 Aligned_cols=121 Identities=22% Similarity=0.241 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHH-HHHHHhcccccccccCCceEEEEecCCCCHH--HHHHHHHHhhcCCCCCC-
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTT-LALEVCRDHQVTSYFNNRILFLTVSQSPNVE--QLRAKVWGFVSGCDSME- 268 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTt-LA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~--~l~~~i~~~l~~~~~~~- 268 (830)
+++.+.+ ..-.||.|+|-.|.|||| ||+.+|.+- .-+.++ +-+.+...+. .+.+.+.++++......
T Consensus 362 ~~ll~~i---r~n~vvvivgETGSGKTTQl~QyL~edG----Y~~~Gm--IGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 362 DQLLSVI---RENQVVVIVGETGSGKTTQLAQYLYEDG----YADNGM--IGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHH---hhCcEEEEEecCCCCchhhhHHHHHhcc----cccCCe--eeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 4444444 345799999999999998 566677532 112232 4444444333 34556666654322111
Q ss_pred -----------CCCCccc---chHHHHhh----cCCcEEEEEeCCCCh----Hh----HHHhhhcCCCceEEEEeccccc
Q 003321 269 -----------PNYVIPH---WNLQIQSK----LGSRCLVVLDDVWSL----AV----LEQLIFRVPGCKTLVVSRFKFS 322 (830)
Q Consensus 269 -----------~~~~~~~---~~~~~~~l----~~kr~LlVlDdv~~~----~~----~~~l~~~~~gs~iivTtr~~~~ 322 (830)
....+.. ...+.+.+ -.|--.||+|...+- +. +......-..-|+||||-....
T Consensus 433 GYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 433 GYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred ceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 0000100 00111122 345667899998753 22 2333334457899999976543
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.33 E-value=0.46 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+|++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999853
No 424
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.29 E-value=0.2 Score=44.07 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=32.3
Q ss_pred ccccchhhHHHHHHHhc------CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 185 GIGMALGKNKVKEMVIG------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~------~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|.....+.+.+.+.+ .+++-|++..|.+|+|||-+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666666666666532 256779999999999999988887654
No 425
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.28 E-value=0.11 Score=49.92 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.|++|+|++|.|||||.+.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456999999999999999998863
No 426
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.25 E-value=0.15 Score=51.36 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..-+++.|.|.+|+|||++|.++.. .....+...++|++..+ +..++.+.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee--~~~~l~~~~ 67 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEE--PPEELIENM 67 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS---HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecC--CHHHHHHHH
Confidence 4567999999999999999998763 22222234566777654 345554444
No 427
>PRK15453 phosphoribulokinase; Provisional
Probab=92.21 E-value=0.13 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|.+|.||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998873
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.19 E-value=0.55 Score=55.87 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCCCh---HhHH----Hhhhc--CCCceEEEEecccccc----cccc--eEEccCCCHHHHHHHHHHHhcC
Q 003321 285 GSRCLVVLDDVWSL---AVLE----QLIFR--VPGCKTLVVSRFKFST----VLND--TYEVELLREDESLSLFCYSAFG 349 (830)
Q Consensus 285 ~kr~LlVlDdv~~~---~~~~----~l~~~--~~gs~iivTtr~~~~~----~~~~--~~~l~~L~~~e~~~Lf~~~af~ 349 (830)
..+-|+++|..-.. .... .+... ..|+.+|+||-..... .... .+.+. ++. +... |... +.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Yk-l~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYK-LL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEE-EC
Confidence 57899999998742 2111 12211 2588999999876542 1011 11111 110 1000 1011 11
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhcc
Q 003321 350 QKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSK 400 (830)
Q Consensus 350 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 400 (830)
... + -...|-+|++++ |+|-.+.--|..+-+......+.+++.+..
T Consensus 477 ~G~-~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGI-P---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCC-C---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 1 124677888887 899999888888877666677777776654
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.15 E-value=0.27 Score=51.94 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=25.4
Q ss_pred HHHHHhc-CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 195 VKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 195 l~~~L~~-~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.+.+.. ..+..+|+|.|.+|+|||||+..+..
T Consensus 45 l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 45 LLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3444432 35678999999999999999998873
No 430
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.14 E-value=0.12 Score=46.89 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+-|.++|..|.|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999754
No 431
>PRK08356 hypothetical protein; Provisional
Probab=92.14 E-value=0.12 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHh
Q 003321 205 LSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..+|+|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999994
No 432
>PRK14526 adenylate kinase; Provisional
Probab=92.14 E-value=0.41 Score=47.26 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|.|+|++|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999874
No 433
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.14 E-value=0.16 Score=52.25 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=27.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
++|+|+|.+|+|||||+.++. ...+++. ++..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li--~~L~~~G--~V~~IKhd 37 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLV--DRLSGRG--RVGTVKHM 37 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHH--HHHHhCC--CEEEEEEc
Confidence 589999999999999999999 4555554 34455443
No 434
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.10 E-value=0.11 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+-|.++||.|+||||+.+++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3578999999999999999983
No 435
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.08 E-value=0.43 Score=52.16 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHhhcCCC---CCCCCCCcccch-
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCD---SMEPNYVIPHWN- 277 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~---~~~~~~~~~~~~- 277 (830)
..-..++|+|..|+|||||++.+++.... +..+ .+-+++.. .+.++....+..-.... .....+.....+
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v-~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNADA----DVSV-IGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC----CEEE-EEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 45578999999999999999999853221 2233 45555543 34455544443211000 000111111111
Q ss_pred -------HHHHhh--cCCcEEEEEeCCCC
Q 003321 278 -------LQIQSK--LGSRCLVVLDDVWS 297 (830)
Q Consensus 278 -------~~~~~l--~~kr~LlVlDdv~~ 297 (830)
...+.+ .++.+|+++||+..
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 111222 69999999999964
No 436
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.07 E-value=0.16 Score=52.33 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
+.-+++.|.|.+|+|||++|.++.. +...+.. .++||+..+ +..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge-~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGE-PVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCC-cEEEEEecC--CHHHHHHHHHH
Confidence 5678999999999999999999884 4444443 466887775 44555555433
No 437
>PRK04182 cytidylate kinase; Provisional
Probab=92.05 E-value=0.12 Score=49.82 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 438
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.04 E-value=0.12 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+++|.+|+|||||+..+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 439
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=1.1 Score=50.57 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCcccccccchhhHHHHHHH---hcC--------CCceEEEEEcCCCChHHHHHHHHhccccc
Q 003321 180 LGNLMGIGMALGKNKVKEMV---IGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQV 231 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~ 231 (830)
+...++-|.++.++++.+.+ .+. .-++=+..+|++|.|||.||+++.....|
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34456688888777766665 322 12456889999999999999999965444
No 440
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.00 E-value=0.13 Score=48.07 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 441
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.00 E-value=0.26 Score=50.62 Aligned_cols=41 Identities=29% Similarity=0.513 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
..-+++.|.|.+|+|||++|.++... ..+. ...+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QASR--GNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHhC--CCcEEEEEecC
Confidence 45679999999999999999997632 1222 34566887764
No 442
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.99 E-value=0.14 Score=52.86 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
.+.++|.++|++|+||||++..++.. .... ..++.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~-g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQ-GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhc-CCEEEEEeCC
Confidence 45789999999999999999988743 2222 2356566544
No 443
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=1.8 Score=42.71 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=33.8
Q ss_pred cccccchhhHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHh
Q 003321 184 MGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.+-|-+..++++++.+.-. ..++=+..+|++|.|||-+|++.+
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcA 226 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACA 226 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 4456777888888876321 456778899999999999999988
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.92 E-value=0.14 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+..+|+++|++|+||||++..++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999999999984
No 445
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.85 E-value=0.14 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHh
Q 003321 205 LSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..+||++|+.|+||||.|+.+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~ 23 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILA 23 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHH
Confidence 3689999999999999999876
No 446
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.84 E-value=0.38 Score=52.62 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHHhhcCCCC---CCCCCCcccc--
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPNYVIPHW-- 276 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~-- 276 (830)
..-.-++|.|.+|+|||||+..+... ........++++-+++. ..+.++...+...=..... ....+.....
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34467899999999999999998743 22222334446666654 3456666666432100000 0011111111
Q ss_pred ---------hHHHHhhcCCcEEEEEeCCCCh
Q 003321 277 ---------NLQIQSKLGSRCLVVLDDVWSL 298 (830)
Q Consensus 277 ---------~~~~~~l~~kr~LlVlDdv~~~ 298 (830)
...+..-+++++||++||+...
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1112222579999999999753
No 447
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.83 E-value=0.1 Score=48.46 Aligned_cols=23 Identities=48% Similarity=0.738 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|++|+|..|.|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999983
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.83 E-value=17 Score=39.27 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC-CCCHHHHHHHHHHhhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVS 262 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~ 262 (830)
..+.||-.+|.-|.||||-|-.+++. .++ ....+..|+... .+..-+-++.+.+++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 45789999999999999999988743 333 334554443322 1222233445555543
No 449
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.80 E-value=0.4 Score=52.79 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCChHHHHH-HHHhcccccc-----cccCCceEEEEecCCCC
Q 003321 204 DLSVLGICGIGGSGKTTLA-LEVCRDHQVT-----SYFNNRILFLTVSQSPN 249 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA-~~v~~~~~~~-----~~F~~~~~wv~v~~~~~ 249 (830)
.-.-++|.|..|+|||+|| -.+.|...+. ++- ..++++-+++...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~-~v~VyvaIGeR~r 238 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNA-VISIYVSIGQRCS 238 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCC-CEEEEEEeccchH
Confidence 3457899999999999997 5566644221 122 2345788877654
No 450
>PF13245 AAA_19: Part of AAA domain
Probab=91.80 E-value=0.16 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=16.7
Q ss_pred CceEEEEEcCCCChHHHHHHHH
Q 003321 204 DLSVLGICGIGGSGKTTLALEV 225 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v 225 (830)
+-+++.|.|++|.|||+++.+.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~ 30 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAAR 30 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHH
Confidence 4567888999999999554443
No 451
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.79 E-value=0.28 Score=48.41 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=38.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-CCHHHHHHHHHH
Q 003321 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWG 259 (830)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~ 259 (830)
.++.+..-..-.-++|+|.+|+|||+|+..+.++.. . ..++++.+++. ..+.++.+.+..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~--~---d~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD--A---DVVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT--T---TEEEEEEESECHHHHHHHHHHHHH
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc--c---cceeeeeccccchhHHHHHHHHhh
Confidence 344443223346789999999999999999986432 1 12246777655 345556655543
No 452
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.78 E-value=1.1 Score=50.99 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|....+.++.+.+..- ..-.-|.|+|..|+|||++|+.+.+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45789999998888888542 44557889999999999999999853
No 453
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.75 E-value=0.35 Score=52.71 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccc---------cc-cCCceEEEEecCCCCHHHHHHHHHHhhc-CCCC---CCC
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVT---------SY-FNNRILFLTVSQSPNVEQLRAKVWGFVS-GCDS---MEP 269 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~---------~~-F~~~~~wv~v~~~~~~~~l~~~i~~~l~-~~~~---~~~ 269 (830)
.-.-++|.|-+|+|||||+..+.++.... ++ =...++++-+++.....+.+...+..-+ .... ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34578999999999999999998654310 00 0113446777777666665555554432 1100 001
Q ss_pred CCCccc-----------chHHHHhhcCCcEEEEEeCCCC
Q 003321 270 NYVIPH-----------WNLQIQSKLGSRCLVVLDDVWS 297 (830)
Q Consensus 270 ~~~~~~-----------~~~~~~~l~~kr~LlVlDdv~~ 297 (830)
.+.... ....+..-+++++|+++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 1112222258999999999964
No 454
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.74 E-value=0.13 Score=48.97 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 455
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=2 Score=48.90 Aligned_cols=123 Identities=22% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (830)
...+.+-++|++|.|||.||+++++ ....+| +.+... ++..+.+ + .........+..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~----~l~sk~v----G-------esek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS----ELLSKWV----G-------ESEKNIRELFEK 330 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----HHhcccc----c-------hHHHHHHHHHHH
Confidence 3566899999999999999999995 223333 223221 1111100 0 011111112211
Q ss_pred -hcCCcEEEEEeCCCChH-------------hHHHhhhc----CCCce-EEEEecccccc---------cccceEEccCC
Q 003321 283 -KLGSRCLVVLDDVWSLA-------------VLEQLIFR----VPGCK-TLVVSRFKFST---------VLNDTYEVELL 334 (830)
Q Consensus 283 -l~~kr~LlVlDdv~~~~-------------~~~~l~~~----~~gs~-iivTtr~~~~~---------~~~~~~~l~~L 334 (830)
.+...+.|.+|+++... ....++.. -+.+. ++|.+.+.... ..+..+.+++.
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 25678999999997431 22233221 12222 23333333221 23567899999
Q ss_pred CHHHHHHHHHHHhc
Q 003321 335 REDESLSLFCYSAF 348 (830)
Q Consensus 335 ~~~e~~~Lf~~~af 348 (830)
+.++..+.|+.+.-
T Consensus 411 d~~~r~~i~~~~~~ 424 (494)
T COG0464 411 DLEERLEIFKIHLR 424 (494)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998874
No 456
>PLN02165 adenylate isopentenyltransferase
Probab=91.71 E-value=0.15 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..-.+|+|+|+.|+||||||..++.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHH
Confidence 34556999999999999999999884
No 457
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.69 E-value=0.14 Score=45.16 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999963
No 458
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.68 E-value=0.5 Score=47.85 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=38.8
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..+-++|.+. ..-+++.|.|.+|.|||++|.++... ..+. ...++|++... ++.++.+.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 3444445333 56789999999999999999986532 1222 23466877654 555666554
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.68 E-value=0.13 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999853
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.66 E-value=0.14 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-..|+|+|++|+|||||-+.+.-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999973
No 461
>PRK08149 ATP synthase SpaL; Validated
Probab=91.63 E-value=0.63 Score=50.77 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC-CCCHHHHHHHHHHhhcCCCC---CCCCCCcccc--
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDS---MEPNYVIPHW-- 276 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~-- 276 (830)
..-..++|+|.+|+|||||++.+++.... +..+ ...+.. ..++.++............. ....+.....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v-~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFV-IGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCCC----CeEE-EEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 34568999999999999999999863222 2212 333433 23455555555543211100 0011111110
Q ss_pred ------hHHHHhh--cCCcEEEEEeCCCCh
Q 003321 277 ------NLQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 277 ------~~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
....+.+ ++|++||++||+...
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 0111222 699999999999743
No 462
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.63 E-value=0.21 Score=47.33 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHH
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
...|+|-|++|+|||||..+.+ ...++.|...++--++-...+.+.+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~--~~L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTL--RALKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHH--HHHHhhCCeEEEeceeechhhHHHHHh
Confidence 4799999999999999999999 456666765543333333334444333
No 463
>PLN02796 D-glycerate 3-kinase
Probab=91.60 E-value=0.16 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-+|+|.|..|.||||||+.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999984
No 464
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.60 E-value=0.14 Score=61.85 Aligned_cols=190 Identities=17% Similarity=0.123 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccC--CceEEEEecCCC----CHH--HHHHHHHHhhcCCCCCCCCCCcccc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--NRILFLTVSQSP----NVE--QLRAKVWGFVSGCDSMEPNYVIPHW 276 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~--~~~~wv~v~~~~----~~~--~l~~~i~~~l~~~~~~~~~~~~~~~ 276 (830)
..-+.|+|-+|.||||+.+.+.-. ...+.+. ....++.+.... ... .+..-+...+....... +..
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~-~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-----~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALW-LAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK-----QLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHH-hccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc-----hhh
Confidence 347899999999999999987631 1111211 111233332110 011 22222222222221110 111
Q ss_pred hHHHHhhcCCcEEEEEeCCCChH---------hHHHhhhcCCCceEEEEecccccc---cccceEEccCCCHHHHH----
Q 003321 277 NLQIQSKLGSRCLVVLDDVWSLA---------VLEQLIFRVPGCKTLVVSRFKFST---VLNDTYEVELLREDESL---- 340 (830)
Q Consensus 277 ~~~~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~~~gs~iivTtr~~~~~---~~~~~~~l~~L~~~e~~---- 340 (830)
....+.++..++|+.+|+++... .+..+.+.+|.+++|+|+|..... ..-..+++..+.++.-.
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 11123457899999999988542 356666788999999999887654 22233444444443222
Q ss_pred ----HHHHHHhcCCCCCCCc-hhHHH---HHHHHHHcCCchHHHHHHHHHhc------CCChHHHHHHHHHhcc
Q 003321 341 ----SLFCYSAFGQKTIPPS-ANENL---VKQIVKKCKGLPLALKVIGASLR------EQPEMYWTSAKKRLSK 400 (830)
Q Consensus 341 ----~Lf~~~af~~~~~~~~-~~~~~---~~~i~~~c~GlPLai~~~~~~L~------~~~~~~w~~~l~~l~~ 400 (830)
+.+....++....+.. ....+ ...-++.....|+.+.+.+..-. ......++.+.+.+-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 2222222333222110 11111 12233333777988888875443 2234566666665543
No 465
>PRK05973 replicative DNA helicase; Provisional
Probab=91.54 E-value=0.36 Score=48.31 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
.+-.++.|.|.+|+|||++|.++...- .++ ...+++++.... ..++...+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~--Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA-MKS--GRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc--CCeEEEEEEeCC--HHHHHHHHH
Confidence 456799999999999999999986422 222 234556666543 555655543
No 466
>PRK01184 hypothetical protein; Provisional
Probab=91.54 E-value=0.14 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=17.6
Q ss_pred eEEEEEcCCCChHHHHHHHHh
Q 003321 206 SVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.+|+|+|++|+||||+|+ ++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~ 21 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IA 21 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HH
Confidence 489999999999999987 44
No 467
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.53 E-value=0.36 Score=52.81 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHhhcCCC-C--CCCCCCcccc--
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCD-S--MEPNYVIPHW-- 276 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~-~--~~~~~~~~~~-- 276 (830)
..-.-++|.|.+|+|||+|+..+.+... +.+-+ .++++-+++.. .+.++.+.+...=.... . ....+.....
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~-v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQG-VSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hcCCC-EEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 3446789999999999999999875422 22223 34477776654 35556655543210000 0 0011111111
Q ss_pred ---------hHHHHhhcCCcEEEEEeCCCCh
Q 003321 277 ---------NLQIQSKLGSRCLVVLDDVWSL 298 (830)
Q Consensus 277 ---------~~~~~~l~~kr~LlVlDdv~~~ 298 (830)
...+..-+++++|+++||+...
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1112212589999999999753
No 468
>PRK05922 type III secretion system ATPase; Validated
Probab=91.51 E-value=0.5 Score=51.59 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC-CCCHHHHHHHHHHhhcCCCCC---CCCCCcccch-
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDSM---EPNYVIPHWN- 277 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~- 277 (830)
..-..++|+|..|+|||||.+.+.+... .+..+ .+-+++ .....+.+.+........... ...+.....+
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gv-i~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINV-IALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceE-EEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 4456799999999999999999985322 22233 333333 233445554444332211100 0111111111
Q ss_pred -------HHHHhh--cCCcEEEEEeCCCCh
Q 003321 278 -------LQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 278 -------~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
...+.. +++++|+++||+...
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111222 689999999999753
No 469
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.48 E-value=0.14 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-++.|+|+|.+|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999984
No 470
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.48 E-value=0.14 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.47 E-value=0.22 Score=50.12 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcccc-----cccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQ-----VTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~-----~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
+..|+|++|.||||++..+..... ....-...+ .++...+..++.+...+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~i-l~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKI-LVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-E-EEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccc-eeecCCchhHHHHHHHHHh
Confidence 789999999999987766653220 113334445 4444444455566555544
No 472
>PRK14532 adenylate kinase; Provisional
Probab=91.46 E-value=0.14 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999983
No 473
>PRK06761 hypothetical protein; Provisional
Probab=91.44 E-value=0.15 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|.|.|++|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999953
No 474
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.44 E-value=0.12 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999984
No 475
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.43 E-value=0.14 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.|.|+|++|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
No 476
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.41 Score=54.47 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-h
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-K 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l 283 (830)
.+=|-.+|++|.|||-+|++|+-. |. .-+++|... +++..-..+ ..+..+..+++ .
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATE------cs--L~FlSVKGP----ELLNMYVGq-----------SE~NVR~VFerAR 761 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATE------CS--LNFLSVKGP----ELLNMYVGQ-----------SEENVREVFERAR 761 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhh------ce--eeEEeecCH----HHHHHHhcc-----------hHHHHHHHHHHhh
Confidence 457889999999999999999942 32 235666543 222222211 12223334333 3
Q ss_pred cCCcEEEEEeCCCCh
Q 003321 284 LGSRCLVVLDDVWSL 298 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~ 298 (830)
..++|.|.+|.+++.
T Consensus 762 ~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSL 776 (953)
T ss_pred ccCCeEEEecccccc
Confidence 678999999999863
No 477
>PRK13768 GTPase; Provisional
Probab=91.36 E-value=0.16 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++.|.|+||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35889999999999999988773
No 478
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.36 E-value=0.42 Score=48.27 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=38.8
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..+-++|-+. ..-+++.|.|.+|+|||++|.++... -.++ ...++|++..+ ++.++.+.+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~--g~~~~y~~~e~--~~~~~~~~~ 72 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ--GKKVYVITTEN--TSKSYLKQM 72 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC--CCEEEEEEcCC--CHHHHHHHH
Confidence 3444444322 45779999999999999999998532 2222 34567888764 345555554
No 479
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.36 E-value=0.14 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-|+|+|++|+|||||+.++..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46899999999999999999865
No 480
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.34 E-value=0.33 Score=50.32 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=59.7
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCC-
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEP- 269 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~- 269 (830)
.+++.++|... ..-+.|.|.|..|.||||+++.+.. .+... ..++ +.+.+..... + ..... .....
T Consensus 113 ~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~--~i~~~-~~~i--v~iEd~~E~~-l-----~~~~~-~~~~~~ 180 (270)
T PF00437_consen 113 PEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLE--EIPPE-DERI--VTIEDPPELR-L-----PGPNQ-IQIQTR 180 (270)
T ss_dssp HHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHH--HCHTT-TSEE--EEEESSS-S--------SCSSE-EEEEEE
T ss_pred HHHHHHHHhhccccceEEEEECCCccccchHHHHHhh--hcccc-ccce--EEecccccee-e-----cccce-EEEEee
Confidence 34555566432 3578999999999999999999884 33333 2333 3333221110 0 00000 00000
Q ss_pred CCCcccchHHHHhhcCCcEEEEEeCCCChHhHHHhhhcCCCceE-EEEec
Q 003321 270 NYVIPHWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVPGCKT-LVVSR 318 (830)
Q Consensus 270 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~gs~i-ivTtr 318 (830)
.............++...=.+|++.+.+.+.+..+.....|..+ +-|.-
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~~tGh~~~~tT~H 230 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAANTGHLGSLTTLH 230 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHHHTT-EEEEEEEE
T ss_pred cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhhccCCceeeeeee
Confidence 01111112223334566678899999999888886666677787 44444
No 481
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=1 Score=53.25 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.4
Q ss_pred ccccccchhhHHHHHHHhcC-----C--CceEEEEEcCCCChHHHHHHHHh
Q 003321 183 LMGIGMALGKNKVKEMVIGR-----D--DLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-----~--~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..++|.++.+..|-+.+... + +.-...+.|+.|+|||-||+++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA 612 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALA 612 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHH
Confidence 34577777777777777543 2 46678899999999999999998
No 482
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.29 E-value=0.23 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+...|+|+|.+|+|||||.+.+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34456999999999999999999863
No 483
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.88 Score=44.94 Aligned_cols=43 Identities=28% Similarity=0.172 Sum_probs=31.8
Q ss_pred ccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 185 GIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+=|=.+.++++.+.+.- -+..+=|..+|++|.|||-+|++|+|
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 34555566666655421 15677889999999999999999996
No 484
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.19 E-value=0.14 Score=49.31 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999873
No 485
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.17 E-value=0.18 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+|+|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998753
No 486
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.15 E-value=0.2 Score=48.60 Aligned_cols=45 Identities=27% Similarity=0.326 Sum_probs=29.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHH
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
++.|.|++|+|||+||.++.... .+ ....+.|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~-~~--~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG-LA--RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH-HH--CCCcEEEEECCC--CHHHHHHH
Confidence 36789999999999999886431 12 234566776654 44555444
No 487
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.13 E-value=0.21 Score=46.34 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++..||-+.|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 5677999999999999999999983
No 488
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.11 E-value=0.17 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 489
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.10 E-value=0.46 Score=52.15 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC---CCCCCCcccch--
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS---MEPNYVIPHWN-- 277 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~~-- 277 (830)
..-..++|.|..|.|||||++.+...... +..+++..-.....+.++.+.+...-..... ....+.....+
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 45678999999999999999999853321 2334333222334455555555432110000 00111111111
Q ss_pred ------HHHHhh--cCCcEEEEEeCCCCh
Q 003321 278 ------LQIQSK--LGSRCLVVLDDVWSL 298 (830)
Q Consensus 278 ------~~~~~l--~~kr~LlVlDdv~~~ 298 (830)
...+.. +++++|+++||+...
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111222 689999999998753
No 490
>PRK14531 adenylate kinase; Provisional
Probab=91.10 E-value=0.17 Score=48.86 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.|+|++|.||||+|+.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999984
No 491
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.09 E-value=0.17 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||++.++.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456999999999999999999984
No 492
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.09 E-value=6.8 Score=41.32 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=33.1
Q ss_pred eEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHH
Q 003321 328 TYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (830)
Q Consensus 328 ~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai 376 (830)
.++|+.++.+|+..++..++-..--......+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6799999999999999887633221111233445666776778888643
No 493
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.08 E-value=0.16 Score=42.84 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999884
No 494
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.07 E-value=4.8 Score=47.52 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=34.4
Q ss_pred ccccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|......++.+.+..- ..-.-|-|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 34678888777777776432 22334779999999999999999853
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.06 E-value=0.17 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||++.++.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3456999999999999999999984
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.02 E-value=0.74 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+|+++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998764
No 497
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.99 E-value=0.19 Score=48.13 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.+++|+|..|.|||||.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4556999999999999999999984
No 498
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=90.97 E-value=0.13 Score=51.91 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 210 ICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 210 I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
|+||+|+||||+++.+.+.....+ . .+..|+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~-~--~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG-R--DVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S---EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-C--CceEEEcch
Confidence 689999999999999986433222 1 234566543
No 499
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.96 E-value=0.28 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+-+|.|.|.+|+||||+|+.+++
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~ 114 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELAS 114 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999984
No 500
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.95 E-value=0.17 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
Done!