Query 003321
Match_columns 830
No_of_seqs 498 out of 4185
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.9E-45 2.4E-49 415.8 19.1 307 184-516 129-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.2E-40 1.1E-44 378.9 19.6 285 182-507 127-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-37 2E-41 388.9 27.3 313 180-514 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-34 5.6E-39 335.5 24.2 309 181-512 122-450 (591)
5 4fcg_A Uncharacterized protein 99.9 1.5E-22 5.1E-27 215.9 20.8 226 566-799 81-311 (328)
6 4fcg_A Uncharacterized protein 99.8 1.7E-20 5.8E-25 200.0 18.8 220 589-819 79-308 (328)
7 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-20 5.9E-25 198.8 12.3 209 582-799 67-278 (313)
8 1ogq_A PGIP-2, polygalacturona 99.8 7.2E-20 2.5E-24 194.0 15.8 246 544-800 51-302 (313)
9 3rgz_A Protein brassinosteroid 99.8 8.1E-19 2.8E-23 209.4 18.7 227 565-799 417-714 (768)
10 3rgz_A Protein brassinosteroid 99.8 1.1E-18 3.7E-23 208.4 18.5 246 565-818 393-710 (768)
11 3v47_A TOLL-like receptor 5B a 99.8 4.9E-18 1.7E-22 190.5 19.7 232 565-799 78-405 (455)
12 3zyi_A Leucine-rich repeat-con 99.8 7E-18 2.4E-22 188.7 19.6 223 566-799 75-300 (452)
13 3zyj_A Leucine-rich repeat-con 99.8 7.7E-18 2.6E-22 187.7 18.2 223 566-799 64-289 (440)
14 2id5_A Lingo-1, leucine rich r 99.8 1.2E-17 4E-22 188.5 19.5 248 543-799 32-306 (477)
15 2z66_A Variable lymphocyte rec 99.7 5.2E-18 1.8E-22 179.4 13.8 228 566-799 28-258 (306)
16 3v47_A TOLL-like receptor 5B a 99.7 9.2E-18 3.1E-22 188.3 16.5 272 542-819 29-402 (455)
17 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-17 9.6E-22 171.8 18.8 200 590-799 31-235 (285)
18 1xku_A Decorin; proteoglycan, 99.7 3.3E-17 1.1E-21 175.2 19.0 176 618-800 121-304 (330)
19 3o6n_A APL1; leucine-rich repe 99.7 3.5E-17 1.2E-21 179.4 19.3 129 544-680 46-176 (390)
20 3oja_A Leucine-rich immune mol 99.7 4.7E-18 1.6E-22 191.1 12.2 217 565-802 33-250 (487)
21 2id5_A Lingo-1, leucine rich r 99.7 5.2E-17 1.8E-21 183.2 20.4 226 565-800 103-331 (477)
22 3oja_B Anopheles plasmodium-re 99.7 2.7E-17 9.2E-22 190.6 17.9 224 565-799 98-355 (597)
23 4eco_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 199.2 10.1 200 616-819 247-464 (636)
24 3oja_B Anopheles plasmodium-re 99.7 5.3E-17 1.8E-21 188.1 19.5 257 545-818 53-351 (597)
25 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.7E-22 179.9 13.6 206 586-799 71-311 (353)
26 3t6q_A CD180 antigen; protein- 99.7 6.1E-17 2.1E-21 188.6 19.5 208 587-799 346-557 (606)
27 2ft3_A Biglycan; proteoglycan, 99.7 5.1E-17 1.7E-21 173.8 17.3 243 544-801 55-306 (332)
28 3t6q_A CD180 antigen; protein- 99.7 1.2E-16 4.1E-21 186.1 21.8 182 614-799 274-459 (606)
29 3o6n_A APL1; leucine-rich repe 99.7 8.7E-17 3E-21 176.3 19.4 245 545-800 71-350 (390)
30 3zyi_A Leucine-rich repeat-con 99.7 7.2E-17 2.5E-21 180.5 18.8 228 580-819 66-297 (452)
31 2z7x_B TOLL-like receptor 1, v 99.7 1.4E-16 4.9E-21 181.7 21.6 103 544-653 22-127 (520)
32 2z7x_B TOLL-like receptor 1, v 99.7 1.6E-16 5.3E-21 181.4 21.8 131 666-799 321-454 (520)
33 4fmz_A Internalin; leucine ric 99.7 2.1E-16 7.4E-21 170.2 21.5 215 587-822 106-321 (347)
34 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-18 1.5E-22 180.8 8.0 216 565-801 33-249 (317)
35 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-17 1.1E-21 191.1 16.1 245 545-799 309-555 (606)
36 3vq2_A TLR4, TOLL-like recepto 99.7 2.9E-17 9.8E-22 191.4 15.6 259 545-818 287-551 (606)
37 4ecn_A Leucine-rich repeat pro 99.7 6.2E-17 2.1E-21 192.0 18.6 133 564-704 489-630 (876)
38 3zyj_A Leucine-rich repeat-con 99.7 7.4E-17 2.5E-21 179.7 18.3 227 580-818 55-285 (440)
39 4ecn_A Leucine-rich repeat pro 99.7 6.9E-17 2.4E-21 191.5 18.9 82 566-654 548-632 (876)
40 4eco_A Uncharacterized protein 99.7 2.2E-17 7.4E-22 192.5 13.1 197 614-820 326-544 (636)
41 4fmz_A Internalin; leucine ric 99.7 3E-16 1E-20 169.1 21.1 255 544-822 89-343 (347)
42 1xku_A Decorin; proteoglycan, 99.7 2E-16 6.9E-21 169.0 18.0 220 566-800 52-274 (330)
43 2z66_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 171.1 13.2 211 580-801 19-235 (306)
44 2z80_A TOLL-like receptor 2, v 99.7 6E-17 2E-21 174.9 12.1 234 575-819 38-308 (353)
45 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-16 1.4E-20 162.9 18.0 201 566-778 32-238 (285)
46 2ft3_A Biglycan; proteoglycan, 99.7 6.3E-16 2.2E-20 165.3 19.8 220 565-800 53-275 (332)
47 1wwl_A Monocyte differentiatio 99.7 3.9E-17 1.3E-21 172.9 10.1 200 589-799 93-306 (312)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6E-16 2E-20 178.2 20.4 132 666-799 350-507 (562)
49 1h6u_A Internalin H; cell adhe 99.7 4.2E-16 1.4E-20 164.4 17.0 195 565-783 40-234 (308)
50 3rfs_A Internalin B, repeat mo 99.7 6.7E-16 2.3E-20 159.9 17.8 178 587-776 37-216 (272)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1E-15 3.5E-20 176.2 21.0 105 543-654 52-159 (562)
52 1ziw_A TOLL-like receptor 3; i 99.7 4.2E-16 1.4E-20 184.1 16.9 248 543-798 25-305 (680)
53 2z62_A TOLL-like receptor 4, v 99.7 6.2E-16 2.1E-20 160.7 16.0 200 591-799 28-234 (276)
54 1o6v_A Internalin A; bacterial 99.7 3.2E-15 1.1E-19 167.7 22.9 125 689-822 217-341 (466)
55 3j0a_A TOLL-like receptor 5; m 99.7 7.2E-16 2.5E-20 185.9 18.5 274 542-821 23-371 (844)
56 3oja_A Leucine-rich immune mol 99.7 1.6E-16 5.3E-21 178.8 11.8 222 581-821 20-246 (487)
57 1p9a_G Platelet glycoprotein I 99.7 1.2E-15 4.2E-20 159.2 17.6 197 587-799 6-205 (290)
58 1o6v_A Internalin A; bacterial 99.7 4.1E-15 1.4E-19 166.9 21.7 211 587-820 173-383 (466)
59 2z63_A TOLL-like receptor 4, v 99.6 5.3E-16 1.8E-20 179.3 14.7 206 614-820 278-526 (570)
60 2ast_B S-phase kinase-associat 99.6 1.4E-16 4.8E-21 170.8 9.2 226 584-817 61-301 (336)
61 3bz5_A Internalin-J, INLJ; leu 99.6 4E-15 1.4E-19 165.7 21.1 219 545-797 44-262 (457)
62 2o6q_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 153.7 19.3 186 580-776 28-216 (270)
63 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.4E-20 152.9 16.4 196 591-799 31-236 (239)
64 2z81_A CD282 antigen, TOLL-lik 99.6 6.7E-16 2.3E-20 177.5 14.2 178 544-729 27-208 (549)
65 2z63_A TOLL-like receptor 4, v 99.6 1.1E-15 3.6E-20 176.8 15.8 219 567-799 305-528 (570)
66 2o6q_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 152.2 20.0 194 592-799 17-215 (270)
67 3bz5_A Internalin-J, INLJ; leu 99.6 4.5E-15 1.5E-19 165.3 19.7 251 544-828 65-323 (457)
68 3j0a_A TOLL-like receptor 5; m 99.6 1.3E-15 4.3E-20 183.8 16.4 250 564-819 71-388 (844)
69 1ziw_A TOLL-like receptor 3; i 99.6 1.4E-15 4.7E-20 179.7 15.7 245 566-819 25-303 (680)
70 2z81_A CD282 antigen, TOLL-lik 99.6 9.7E-16 3.3E-20 176.2 13.4 153 544-705 51-208 (549)
71 1wwl_A Monocyte differentiatio 99.6 3E-16 1E-20 166.1 7.4 229 582-819 56-303 (312)
72 3o53_A Protein LRIM1, AGAP0063 99.6 5.7E-16 2E-20 164.3 8.8 218 585-821 28-246 (317)
73 1p9a_G Platelet glycoprotein I 99.6 1E-14 3.4E-19 152.3 17.2 183 580-777 22-207 (290)
74 2ast_B S-phase kinase-associat 99.6 4.6E-16 1.6E-20 166.8 7.1 221 593-822 49-282 (336)
75 3g06_A SSPH2 (leucine-rich rep 99.6 2.5E-14 8.5E-19 164.2 21.9 222 543-800 61-295 (622)
76 3rfs_A Internalin B, repeat mo 99.6 9.5E-15 3.2E-19 151.2 16.6 178 613-799 36-215 (272)
77 1h6u_A Internalin H; cell adhe 99.6 8.6E-15 2.9E-19 154.3 16.6 192 587-800 37-228 (308)
78 2z62_A TOLL-like receptor 4, v 99.6 2.1E-15 7E-20 156.7 11.4 198 618-820 28-232 (276)
79 2ca6_A RAN GTPase-activating p 99.6 6.4E-17 2.2E-21 177.0 -0.4 236 565-800 31-314 (386)
80 2xwt_C Thyrotropin receptor; s 99.6 3.9E-15 1.3E-19 151.0 12.0 198 618-824 31-238 (239)
81 4glp_A Monocyte differentiatio 99.6 5.8E-15 2E-19 156.1 13.1 198 589-799 89-304 (310)
82 3m19_A Variable lymphocyte rec 99.6 2.7E-14 9.3E-19 145.9 17.3 151 618-776 35-190 (251)
83 2ca6_A RAN GTPase-activating p 99.6 2E-16 6.7E-21 173.1 1.3 243 580-822 21-313 (386)
84 4ezg_A Putative uncharacterize 99.6 1.8E-14 6.3E-19 141.1 15.1 151 615-799 41-191 (197)
85 4glp_A Monocyte differentiatio 99.6 1.9E-15 6.4E-20 159.9 8.1 224 590-818 63-300 (310)
86 3g06_A SSPH2 (leucine-rich rep 99.6 5.5E-14 1.9E-18 161.3 20.1 236 545-822 42-294 (622)
87 1h6t_A Internalin B; cell adhe 99.5 3.9E-14 1.3E-18 147.9 13.9 175 587-782 42-216 (291)
88 1h6t_A Internalin B; cell adhe 99.5 4.4E-14 1.5E-18 147.5 13.9 170 613-799 41-210 (291)
89 1w5s_A Origin recognition comp 99.5 2E-13 6.7E-18 150.7 18.4 281 183-479 22-371 (412)
90 1m9s_A Internalin B; cell inva 99.5 7.1E-14 2.4E-18 160.2 15.0 172 587-778 39-210 (605)
91 2qen_A Walker-type ATPase; unk 99.5 5.3E-13 1.8E-17 143.7 20.7 267 181-478 10-332 (350)
92 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.9E-18 134.8 13.8 153 587-776 40-192 (197)
93 1jl5_A Outer protein YOPM; leu 99.5 4E-14 1.4E-18 157.5 11.0 157 618-799 91-247 (454)
94 3m19_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 137.3 17.3 132 614-751 55-189 (251)
95 3cvr_A Invasion plasmid antige 99.5 1.9E-13 6.4E-18 154.8 16.1 148 617-788 99-253 (571)
96 3cvr_A Invasion plasmid antige 99.5 9.1E-14 3.1E-18 157.4 13.5 175 592-800 60-241 (571)
97 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4.1E-18 158.3 13.9 171 613-800 38-208 (605)
98 2fna_A Conserved hypothetical 99.5 2E-12 6.8E-17 139.6 22.4 267 181-478 11-340 (357)
99 4ay9_X Follicle-stimulating ho 99.5 4.8E-13 1.6E-17 143.8 17.2 221 566-799 30-256 (350)
100 1z7x_W Ribonuclease inhibitor; 99.5 6.3E-15 2.2E-19 165.4 1.1 235 564-799 26-294 (461)
101 1jl5_A Outer protein YOPM; leu 99.4 1.1E-12 3.7E-17 145.9 17.2 219 567-817 174-424 (454)
102 1z7x_W Ribonuclease inhibitor; 99.4 1.9E-14 6.7E-19 161.4 0.9 256 566-822 3-294 (461)
103 2o6s_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 131.2 11.9 158 619-790 29-190 (208)
104 4ay9_X Follicle-stimulating ho 99.4 7.9E-13 2.7E-17 142.1 13.2 223 580-817 21-251 (350)
105 3goz_A Leucine-rich repeat-con 99.4 3.7E-14 1.3E-18 153.4 2.3 231 567-799 23-294 (362)
106 4g8a_A TOLL-like receptor 4; l 99.4 3E-12 1E-16 149.8 18.4 208 587-799 367-577 (635)
107 2v70_A SLIT-2, SLIT homolog 2 99.4 2E-12 6.9E-17 128.8 14.3 150 621-776 14-164 (220)
108 2v9t_B SLIT homolog 2 protein 99.4 2.3E-12 7.8E-17 128.4 14.5 148 621-776 14-163 (220)
109 2o6s_A Variable lymphocyte rec 99.4 4.8E-12 1.7E-16 125.0 15.9 169 621-812 10-182 (208)
110 3e6j_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 127.1 15.4 149 619-777 20-171 (229)
111 2qby_B CDC6 homolog 3, cell di 99.4 3.3E-11 1.1E-15 131.5 23.4 275 183-479 20-339 (384)
112 1dce_A Protein (RAB geranylger 99.4 7.5E-14 2.5E-18 159.1 2.2 193 614-817 345-565 (567)
113 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.8E-17 134.6 10.7 172 589-782 17-188 (263)
114 2xot_A Amphoterin-induced prot 99.4 2.3E-12 8E-17 139.0 12.9 111 668-782 63-179 (361)
115 3goz_A Leucine-rich repeat-con 99.4 6.9E-14 2.4E-18 151.2 0.2 231 545-777 24-296 (362)
116 2ell_A Acidic leucine-rich nuc 99.4 4.9E-12 1.7E-16 120.3 12.8 134 617-783 23-164 (168)
117 1xeu_A Internalin C; cellular 99.3 2.8E-12 9.5E-17 131.6 11.8 159 575-753 26-184 (263)
118 2ell_A Acidic leucine-rich nuc 99.3 5.1E-12 1.8E-16 120.1 10.6 129 668-800 23-158 (168)
119 3ogk_B Coronatine-insensitive 99.3 1.3E-12 4.4E-17 151.5 7.3 258 564-823 218-524 (592)
120 2je0_A Acidic leucine-rich nuc 99.3 6.1E-12 2.1E-16 116.9 10.3 126 668-797 16-148 (149)
121 2p1m_B Transport inhibitor res 99.3 2.9E-13 1E-17 157.1 1.6 258 564-826 103-416 (594)
122 1fnn_A CDC6P, cell division co 99.3 5.3E-11 1.8E-15 130.0 19.2 311 183-511 17-384 (389)
123 2v1u_A Cell division control p 99.3 2.1E-10 7.3E-15 125.1 23.7 280 183-479 19-351 (387)
124 2v70_A SLIT-2, SLIT homolog 2 99.3 1.9E-11 6.4E-16 121.7 13.7 148 644-800 14-164 (220)
125 3ogk_B Coronatine-insensitive 99.3 3.9E-13 1.3E-17 155.9 1.3 247 568-820 140-411 (592)
126 2xot_A Amphoterin-induced prot 99.3 1.7E-11 5.7E-16 132.3 13.5 151 619-776 40-200 (361)
127 4g8a_A TOLL-like receptor 4; l 99.3 2.8E-11 9.6E-16 141.5 16.2 206 564-777 369-579 (635)
128 4b8c_D Glucose-repressible alc 99.3 1.5E-12 5.3E-17 153.1 5.4 154 624-785 207-361 (727)
129 2v9t_B SLIT homolog 2 protein 99.3 3E-11 1E-15 120.2 13.9 130 668-800 31-163 (220)
130 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.9E-17 154.2 3.5 140 612-758 218-358 (727)
131 1dce_A Protein (RAB geranylger 99.3 1.5E-13 5.3E-18 156.5 -4.0 120 669-795 441-566 (567)
132 2qby_A CDC6 homolog 1, cell di 99.3 1.1E-10 3.8E-15 127.3 18.9 279 183-478 20-347 (386)
133 2je0_A Acidic leucine-rich nuc 99.2 1E-11 3.5E-16 115.4 8.2 126 617-774 16-149 (149)
134 3e6j_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 118.8 14.3 129 618-753 40-171 (229)
135 2p1m_B Transport inhibitor res 99.2 1E-12 3.6E-17 152.4 1.1 272 545-821 107-441 (594)
136 1a9n_A U2A', U2A'; complex (nu 99.2 6.3E-11 2.1E-15 113.4 10.3 138 668-812 18-163 (176)
137 1w8a_A SLIT protein; signaling 99.2 9.9E-11 3.4E-15 113.7 11.3 127 621-752 11-137 (192)
138 2wfh_A SLIT homolog 2 protein 99.2 1.7E-10 5.9E-15 112.0 12.6 124 621-776 13-137 (193)
139 1njg_A DNA polymerase III subu 99.1 1.7E-09 5.8E-14 109.5 19.0 180 183-383 23-231 (250)
140 1a9n_A U2A', U2A'; complex (nu 99.1 8.8E-11 3E-15 112.4 8.7 129 614-776 15-151 (176)
141 1w8a_A SLIT protein; signaling 99.1 2.1E-10 7.1E-15 111.5 10.7 127 644-778 11-139 (192)
142 2wfh_A SLIT homolog 2 protein 99.1 5.6E-10 1.9E-14 108.4 12.2 122 672-799 13-136 (193)
143 3qfl_A MLA10; coiled-coil, (CC 99.1 3.9E-11 1.3E-15 104.2 3.2 78 11-90 2-82 (115)
144 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 103.7 12.8 125 620-777 9-136 (177)
145 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.9E-16 120.5 -4.0 65 684-751 84-150 (198)
146 2chg_A Replication factor C sm 99.0 1.8E-08 6E-13 100.3 18.4 178 183-381 17-205 (226)
147 2o6r_A Variable lymphocyte rec 98.9 5.6E-09 1.9E-13 99.9 12.9 123 671-800 9-135 (177)
148 1ds9_A Outer arm dynein; leuci 98.9 7.1E-11 2.4E-15 115.5 -2.4 104 667-776 46-151 (198)
149 2r9u_A Variable lymphocyte rec 98.9 8.2E-09 2.8E-13 98.2 10.3 106 672-783 15-122 (174)
150 1sxj_B Activator 1 37 kDa subu 98.8 8.7E-08 3E-12 101.4 17.1 179 183-382 21-212 (323)
151 3g39_A Variable lymphocyte rec 98.8 2E-08 6.9E-13 95.1 10.4 101 671-776 11-113 (170)
152 3sb4_A Hypothetical leucine ri 98.8 5.2E-09 1.8E-13 111.1 6.9 87 565-654 24-137 (329)
153 3sb4_A Hypothetical leucine ri 98.7 3.8E-08 1.3E-12 104.4 11.1 196 590-795 100-327 (329)
154 3g39_A Variable lymphocyte rec 98.7 6.9E-08 2.3E-12 91.4 10.9 102 619-752 10-113 (170)
155 1hqc_A RUVB; extended AAA-ATPa 98.7 9.6E-07 3.3E-11 93.3 20.0 169 183-383 12-214 (324)
156 2r9u_A Variable lymphocyte rec 98.6 8.5E-08 2.9E-12 91.1 10.1 101 695-800 14-116 (174)
157 1iqp_A RFCS; clamp loader, ext 98.6 5.4E-07 1.8E-11 95.4 15.0 180 183-383 25-215 (327)
158 2ra8_A Uncharacterized protein 98.6 6.1E-08 2.1E-12 103.3 6.9 15 614-628 135-149 (362)
159 2ifg_A High affinity nerve gro 98.5 3.1E-07 1.1E-11 98.2 10.1 100 675-776 14-114 (347)
160 3te6_A Regulatory protein SIR3 98.5 1.7E-06 5.8E-11 89.4 14.8 161 184-347 21-211 (318)
161 2ra8_A Uncharacterized protein 98.5 8.6E-08 2.9E-12 102.1 5.2 68 583-652 131-204 (362)
162 3un9_A NLR family member X1; l 98.4 1.7E-08 5.7E-13 108.6 -1.5 64 590-653 71-138 (372)
163 2ifg_A High affinity nerve gro 98.4 5.1E-07 1.8E-11 96.5 9.8 100 697-799 12-113 (347)
164 3un9_A NLR family member X1; l 98.4 8.5E-09 2.9E-13 110.9 -4.5 158 617-777 71-251 (372)
165 1jr3_A DNA polymerase III subu 98.4 4.1E-06 1.4E-10 90.4 16.7 186 184-380 17-221 (373)
166 4fdw_A Leucine rich hypothetic 98.4 6.3E-06 2.2E-10 89.3 17.0 174 612-799 174-355 (401)
167 3pfi_A Holliday junction ATP-d 98.3 2.6E-05 8.7E-10 82.8 20.3 240 183-478 29-312 (338)
168 2chq_A Replication factor C sm 98.3 6.1E-06 2.1E-10 86.8 14.4 174 183-380 17-204 (319)
169 1sxj_A Activator 1 95 kDa subu 98.3 4.9E-06 1.7E-10 93.5 14.4 184 183-380 39-253 (516)
170 1sxj_D Activator 1 41 kDa subu 98.3 1.9E-05 6.4E-10 84.4 17.4 187 183-380 37-235 (353)
171 4fdw_A Leucine rich hypothetic 98.1 5E-05 1.7E-09 82.2 17.7 198 585-800 174-381 (401)
172 1jbk_A CLPB protein; beta barr 98.1 4.5E-06 1.5E-10 80.4 7.9 45 183-228 22-66 (195)
173 3e4g_A ATP synthase subunit S, 98.1 3.8E-06 1.3E-10 78.3 6.7 86 693-778 61-152 (176)
174 1sxj_E Activator 1 40 kDa subu 98.1 3.7E-05 1.3E-09 82.1 14.9 189 183-381 14-238 (354)
175 3h4m_A Proteasome-activating n 98.0 4.2E-05 1.4E-09 78.9 14.1 169 183-378 17-229 (285)
176 3bos_A Putative DNA replicatio 98.0 3.3E-05 1.1E-09 77.4 12.3 158 190-380 38-217 (242)
177 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 78.7 4.5 102 717-818 61-173 (176)
178 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.0002 6.7E-09 75.0 18.0 174 183-381 12-224 (322)
179 1d2n_A N-ethylmaleimide-sensit 98.0 5.3E-05 1.8E-09 77.5 13.4 186 185-400 35-263 (272)
180 3d8b_A Fidgetin-like protein 1 98.0 0.00016 5.4E-09 77.1 17.5 173 183-381 84-296 (357)
181 3u61_B DNA polymerase accessor 97.9 0.00017 5.7E-09 75.9 16.7 168 183-377 26-213 (324)
182 2z4s_A Chromosomal replication 97.9 0.00011 3.7E-09 80.6 15.1 152 205-377 130-303 (440)
183 1a5t_A Delta prime, HOLB; zinc 97.9 0.00026 8.9E-09 74.6 17.6 160 192-379 11-204 (334)
184 3eie_A Vacuolar protein sortin 97.9 0.00025 8.5E-09 74.4 17.1 172 183-380 18-228 (322)
185 3pvs_A Replication-associated 97.9 0.00032 1.1E-08 76.7 18.0 170 184-380 27-215 (447)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.0006 2E-08 69.1 18.0 171 184-379 7-221 (262)
187 3b9p_A CG5977-PA, isoform A; A 97.8 0.00066 2.3E-08 70.3 18.3 172 183-380 21-233 (297)
188 1sxj_C Activator 1 40 kDa subu 97.8 0.0004 1.4E-08 73.5 16.7 173 184-377 26-209 (340)
189 2zan_A Vacuolar protein sortin 97.8 0.00075 2.6E-08 74.0 19.0 173 183-380 134-345 (444)
190 3uk6_A RUVB-like 2; hexameric 97.7 0.00012 4.1E-09 78.6 11.7 188 184-378 45-301 (368)
191 2qp9_X Vacuolar protein sortin 97.7 0.00048 1.6E-08 73.2 15.9 172 183-380 51-261 (355)
192 3syl_A Protein CBBX; photosynt 97.7 0.00029 9.8E-09 73.5 13.9 145 185-347 33-217 (309)
193 3cf0_A Transitional endoplasmi 97.7 0.00079 2.7E-08 69.7 16.1 164 184-374 16-222 (301)
194 1l8q_A Chromosomal replication 97.7 0.00051 1.7E-08 72.2 14.8 159 192-375 23-203 (324)
195 3vfd_A Spastin; ATPase, microt 97.6 0.0017 5.7E-08 70.1 18.0 172 183-380 115-326 (389)
196 2p65_A Hypothetical protein PF 97.6 6.9E-05 2.4E-09 71.5 6.1 45 183-228 22-66 (187)
197 4b4t_J 26S protease regulatory 97.5 0.0019 6.6E-08 68.3 16.2 160 183-373 148-354 (405)
198 3ec2_A DNA replication protein 97.5 0.00017 5.9E-09 68.4 7.4 98 204-320 37-143 (180)
199 2w58_A DNAI, primosome compone 97.5 0.00027 9.4E-09 68.5 8.5 109 192-320 38-159 (202)
200 1ofh_A ATP-dependent HSL prote 97.4 0.00068 2.3E-08 70.6 12.0 45 183-227 15-72 (310)
201 3ozi_A L6TR; plant TIR domain, 97.4 2.3E-06 7.8E-11 80.7 -6.4 94 65-162 83-179 (204)
202 4b4t_L 26S protease subunit RP 97.4 0.0023 7.9E-08 68.9 15.9 164 183-373 181-387 (437)
203 1qvr_A CLPB protein; coiled co 97.4 0.0008 2.7E-08 80.4 13.4 147 183-346 170-344 (854)
204 1in4_A RUVB, holliday junction 97.4 0.0071 2.4E-07 63.5 19.2 163 184-379 26-222 (334)
205 1io0_A Tropomodulin; LRR prote 97.4 9.7E-05 3.3E-09 70.5 4.0 61 688-748 60-128 (185)
206 2gno_A DNA polymerase III, gam 97.4 0.0023 7.8E-08 66.0 14.6 138 189-347 3-152 (305)
207 1io0_A Tropomodulin; LRR prote 97.4 1.8E-05 6.3E-10 75.6 -1.2 41 711-751 115-161 (185)
208 3pxg_A Negative regulator of g 97.3 0.00073 2.5E-08 74.7 11.3 139 184-347 181-338 (468)
209 4b4t_H 26S protease regulatory 97.3 0.0034 1.2E-07 67.4 15.4 158 184-372 210-414 (467)
210 4b4t_K 26S protease regulatory 97.3 0.0027 9.3E-08 68.2 14.3 46 183-228 172-229 (428)
211 3n70_A Transport activator; si 97.3 0.00082 2.8E-08 61.1 8.8 44 185-228 3-47 (145)
212 4b4t_M 26S protease regulatory 97.2 0.0022 7.5E-08 69.0 13.2 159 183-372 181-386 (434)
213 4b4t_I 26S protease regulatory 97.2 0.0044 1.5E-07 65.8 15.1 159 183-372 182-387 (437)
214 3co5_A Putative two-component 97.2 0.00048 1.6E-08 62.5 6.7 44 184-227 5-49 (143)
215 3jrn_A AT1G72930 protein; TIR 97.2 0.00013 4.4E-09 67.6 2.5 83 75-162 66-151 (176)
216 3rw6_A Nuclear RNA export fact 97.1 0.00045 1.5E-08 69.5 5.8 65 716-782 169-237 (267)
217 2r62_A Cell division protease 97.1 0.00084 2.9E-08 68.3 8.0 45 184-228 12-67 (268)
218 1lv7_A FTSH; alpha/beta domain 97.1 0.0084 2.9E-07 60.3 15.2 45 184-228 13-68 (257)
219 2ce7_A Cell division protein F 97.1 0.0097 3.3E-07 65.1 16.4 164 183-373 16-221 (476)
220 1ojl_A Transcriptional regulat 97.0 0.0059 2E-07 63.1 12.9 44 184-227 3-47 (304)
221 3hu3_A Transitional endoplasmi 96.9 0.0068 2.3E-07 66.9 13.7 170 183-379 204-414 (489)
222 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0043 1.5E-07 73.3 13.0 148 184-347 187-362 (758)
223 4fcw_A Chaperone protein CLPB; 96.9 0.0057 1.9E-07 63.6 12.6 43 185-227 19-69 (311)
224 3rw6_A Nuclear RNA export fact 96.9 0.00076 2.6E-08 67.8 5.4 30 742-771 221-257 (267)
225 3pxi_A Negative regulator of g 96.9 0.0089 3.1E-07 70.4 15.3 141 184-347 181-338 (758)
226 2kjq_A DNAA-related protein; s 96.9 0.0009 3.1E-08 61.0 5.0 25 204-228 35-59 (149)
227 3cf2_A TER ATPase, transitiona 96.8 0.011 3.6E-07 68.7 14.0 164 183-373 204-407 (806)
228 3t15_A Ribulose bisphosphate c 96.7 0.011 3.7E-07 60.7 12.4 26 203-228 34-59 (293)
229 2bjv_A PSP operon transcriptio 96.5 0.011 3.8E-07 59.7 11.1 44 185-228 8-52 (265)
230 4gt6_A Cell surface protein; l 96.5 0.05 1.7E-06 58.5 16.8 82 713-800 284-368 (394)
231 4fs7_A Uncharacterized protein 96.4 0.045 1.5E-06 58.9 15.2 101 689-799 272-376 (394)
232 2qgz_A Helicase loader, putati 96.3 0.0054 1.8E-07 63.5 6.7 37 192-228 137-175 (308)
233 2cvh_A DNA repair and recombin 96.3 0.0098 3.3E-07 58.1 8.4 47 203-255 18-64 (220)
234 3m6a_A ATP-dependent protease 96.1 0.014 4.7E-07 65.6 9.6 44 184-227 82-130 (543)
235 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0024 8.2E-08 65.2 2.6 35 204-244 122-156 (331)
236 2dhr_A FTSH; AAA+ protein, hex 96.0 0.066 2.3E-06 58.9 14.2 46 183-228 31-87 (499)
237 1ixz_A ATP-dependent metallopr 96.0 0.068 2.3E-06 53.4 13.4 45 184-228 17-72 (254)
238 1ypw_A Transitional endoplasmi 96.0 0.063 2.2E-06 63.2 14.7 45 183-227 204-260 (806)
239 2x8a_A Nuclear valosin-contain 95.9 0.14 4.8E-06 51.7 15.2 21 208-228 47-67 (274)
240 3pxi_A Negative regulator of g 95.9 0.014 4.9E-07 68.7 9.0 141 183-346 491-674 (758)
241 4fs7_A Uncharacterized protein 95.5 0.13 4.3E-06 55.3 13.8 99 688-794 292-393 (394)
242 3ice_A Transcription terminati 95.2 0.031 1.1E-06 58.2 7.3 53 194-248 163-216 (422)
243 3c8u_A Fructokinase; YP_612366 95.2 0.013 4.5E-07 56.7 4.3 35 193-227 9-44 (208)
244 1rz3_A Hypothetical protein rb 95.1 0.017 5.7E-07 55.6 4.9 38 190-227 5-44 (201)
245 1v5w_A DMC1, meiotic recombina 95.1 0.051 1.8E-06 57.0 9.0 64 193-256 109-176 (343)
246 1r6b_X CLPA protein; AAA+, N-t 95.1 0.1 3.5E-06 61.4 12.5 45 183-227 458-510 (758)
247 3hr8_A Protein RECA; alpha and 95.0 0.032 1.1E-06 58.4 6.9 56 193-251 47-104 (356)
248 3lw7_A Adenylate kinase relate 95.0 0.011 3.7E-07 55.4 3.1 20 206-225 2-21 (179)
249 3io5_A Recombination and repai 95.0 0.029 1E-06 57.0 6.2 43 207-251 30-73 (333)
250 1qhx_A CPT, protein (chloramph 94.8 0.013 4.6E-07 55.0 3.0 22 206-227 4-25 (178)
251 1zp6_A Hypothetical protein AT 94.7 0.016 5.6E-07 55.0 3.6 25 203-227 7-31 (191)
252 1sky_E F1-ATPase, F1-ATP synth 94.7 0.033 1.1E-06 60.0 6.2 62 195-258 141-203 (473)
253 3kb2_A SPBC2 prophage-derived 94.7 0.015 5.2E-07 54.1 3.2 22 206-227 2-23 (173)
254 3vaa_A Shikimate kinase, SK; s 94.7 0.016 5.5E-07 55.6 3.3 24 204-227 24-47 (199)
255 1kgd_A CASK, peripheral plasma 94.7 0.016 5.4E-07 54.7 3.1 23 205-227 5-27 (180)
256 1ly1_A Polynucleotide kinase; 94.5 0.019 6.6E-07 53.9 3.3 22 206-227 3-24 (181)
257 1kag_A SKI, shikimate kinase I 94.4 0.016 5.5E-07 54.0 2.5 22 206-227 5-26 (173)
258 3uie_A Adenylyl-sulfate kinase 94.4 0.023 7.9E-07 54.5 3.7 25 203-227 23-47 (200)
259 3trf_A Shikimate kinase, SK; a 94.3 0.022 7.5E-07 53.8 3.2 23 205-227 5-27 (185)
260 4eun_A Thermoresistant glucoki 94.3 0.023 7.9E-07 54.5 3.3 25 203-227 27-51 (200)
261 4gp7_A Metallophosphoesterase; 94.2 0.024 8.2E-07 52.8 3.2 23 204-226 8-30 (171)
262 1odf_A YGR205W, hypothetical 3 94.1 0.038 1.3E-06 56.3 4.8 25 203-227 29-53 (290)
263 3tau_A Guanylate kinase, GMP k 94.1 0.027 9.1E-07 54.5 3.5 24 204-227 7-30 (208)
264 1knq_A Gluconate kinase; ALFA/ 94.1 0.026 8.8E-07 52.8 3.3 24 204-227 7-30 (175)
265 3tr0_A Guanylate kinase, GMP k 94.1 0.024 8.3E-07 54.5 3.1 23 205-227 7-29 (205)
266 4gt6_A Cell surface protein; l 94.1 0.61 2.1E-05 49.8 14.6 99 689-796 284-385 (394)
267 2bdt_A BH3686; alpha-beta prot 94.0 0.027 9.3E-07 53.4 3.3 22 206-227 3-24 (189)
268 3t61_A Gluconokinase; PSI-biol 94.0 0.021 7.1E-07 55.0 2.5 23 205-227 18-40 (202)
269 3a00_A Guanylate kinase, GMP k 94.0 0.022 7.5E-07 54.0 2.6 22 206-227 2-23 (186)
270 2zr9_A Protein RECA, recombina 94.0 0.044 1.5E-06 57.6 5.1 46 203-251 59-104 (349)
271 1nks_A Adenylate kinase; therm 94.0 0.027 9.2E-07 53.5 3.2 22 206-227 2-23 (194)
272 1tue_A Replication protein E1; 94.0 0.038 1.3E-06 52.3 4.1 38 191-228 44-81 (212)
273 1qvr_A CLPB protein; coiled co 94.0 0.12 4.2E-06 61.5 9.5 44 184-227 559-610 (854)
274 2rhm_A Putative kinase; P-loop 94.0 0.031 1.1E-06 53.1 3.6 24 204-227 4-27 (193)
275 3asz_A Uridine kinase; cytidin 93.9 0.032 1.1E-06 54.0 3.5 25 203-227 4-28 (211)
276 2ze6_A Isopentenyl transferase 93.8 0.03 1E-06 56.0 3.3 22 206-227 2-23 (253)
277 1ye8_A Protein THEP1, hypothet 93.8 0.031 1E-06 52.5 3.1 22 207-228 2-23 (178)
278 4h09_A Hypothetical leucine ri 93.8 1.4 4.8E-05 46.6 16.8 101 690-797 237-341 (379)
279 1kht_A Adenylate kinase; phosp 93.8 0.03 1E-06 53.1 3.1 22 206-227 4-25 (192)
280 2j41_A Guanylate kinase; GMP, 93.8 0.034 1.2E-06 53.5 3.5 24 204-227 5-28 (207)
281 1n0w_A DNA repair protein RAD5 93.8 0.11 3.6E-06 51.4 7.3 52 203-254 22-76 (243)
282 3iij_A Coilin-interacting nucl 93.8 0.028 9.7E-07 52.8 2.8 23 205-227 11-33 (180)
283 1zuh_A Shikimate kinase; alpha 93.7 0.032 1.1E-06 51.7 3.1 24 204-227 6-29 (168)
284 2qt1_A Nicotinamide riboside k 93.7 0.036 1.2E-06 53.4 3.6 25 203-227 19-43 (207)
285 1ex7_A Guanylate kinase; subst 93.7 0.025 8.6E-07 53.2 2.4 22 206-227 2-23 (186)
286 2qor_A Guanylate kinase; phosp 93.7 0.028 9.6E-07 54.1 2.8 24 204-227 11-34 (204)
287 2b8t_A Thymidine kinase; deoxy 93.7 0.046 1.6E-06 53.1 4.2 109 204-321 11-127 (223)
288 1xjc_A MOBB protein homolog; s 93.7 0.035 1.2E-06 51.2 3.2 24 204-227 3-26 (169)
289 3umf_A Adenylate kinase; rossm 93.7 0.036 1.2E-06 53.6 3.4 25 203-227 27-51 (217)
290 3hws_A ATP-dependent CLP prote 93.6 0.045 1.5E-06 58.1 4.5 44 185-228 17-74 (363)
291 1lvg_A Guanylate kinase, GMP k 93.6 0.028 9.5E-07 53.8 2.6 23 205-227 4-26 (198)
292 1via_A Shikimate kinase; struc 93.6 0.028 9.6E-07 52.6 2.5 22 206-227 5-26 (175)
293 1ukz_A Uridylate kinase; trans 93.6 0.04 1.4E-06 52.9 3.7 25 203-227 13-37 (203)
294 2jaq_A Deoxyguanosine kinase; 93.6 0.033 1.1E-06 53.4 3.1 21 207-227 2-22 (205)
295 1tev_A UMP-CMP kinase; ploop, 93.6 0.038 1.3E-06 52.6 3.4 23 205-227 3-25 (196)
296 2bbw_A Adenylate kinase 4, AK4 93.6 0.037 1.2E-06 55.1 3.4 24 204-227 26-49 (246)
297 2c95_A Adenylate kinase 1; tra 93.6 0.038 1.3E-06 52.7 3.4 24 204-227 8-31 (196)
298 2if2_A Dephospho-COA kinase; a 93.5 0.034 1.2E-06 53.5 3.0 22 206-227 2-23 (204)
299 1y63_A LMAJ004144AAA protein; 93.5 0.041 1.4E-06 51.9 3.5 24 204-227 9-32 (184)
300 3ney_A 55 kDa erythrocyte memb 93.5 0.037 1.3E-06 52.5 3.1 24 204-227 18-41 (197)
301 1uf9_A TT1252 protein; P-loop, 93.5 0.041 1.4E-06 52.7 3.6 25 203-227 6-30 (203)
302 1jr3_D DNA polymerase III, del 93.5 0.63 2.1E-05 48.7 13.0 159 193-378 7-183 (343)
303 1cke_A CK, MSSA, protein (cyti 93.5 0.036 1.2E-06 54.3 3.1 22 206-227 6-27 (227)
304 3aez_A Pantothenate kinase; tr 93.4 0.043 1.5E-06 56.6 3.7 25 203-227 88-112 (312)
305 1jjv_A Dephospho-COA kinase; P 93.4 0.042 1.4E-06 53.0 3.3 22 206-227 3-24 (206)
306 3tqc_A Pantothenate kinase; bi 93.4 0.059 2E-06 55.5 4.6 25 203-227 90-114 (321)
307 2iyv_A Shikimate kinase, SK; t 93.4 0.031 1.1E-06 52.7 2.3 22 206-227 3-24 (184)
308 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.044 1.5E-06 55.1 3.6 23 205-227 4-26 (260)
309 2yvu_A Probable adenylyl-sulfa 93.3 0.048 1.6E-06 51.5 3.6 24 204-227 12-35 (186)
310 3cm0_A Adenylate kinase; ATP-b 93.3 0.043 1.5E-06 51.8 3.3 23 205-227 4-26 (186)
311 1znw_A Guanylate kinase, GMP k 93.3 0.042 1.4E-06 53.0 3.2 25 203-227 18-42 (207)
312 1u94_A RECA protein, recombina 93.2 0.11 3.6E-06 54.7 6.3 57 192-251 48-106 (356)
313 2bwj_A Adenylate kinase 5; pho 93.2 0.042 1.4E-06 52.5 3.0 23 205-227 12-34 (199)
314 2z43_A DNA repair and recombin 93.1 0.11 3.8E-06 53.9 6.4 54 203-256 105-161 (324)
315 1e6c_A Shikimate kinase; phosp 93.1 0.038 1.3E-06 51.4 2.6 22 206-227 3-24 (173)
316 2ga8_A Hypothetical 39.9 kDa p 93.1 0.078 2.7E-06 55.0 5.0 25 203-227 22-46 (359)
317 1um8_A ATP-dependent CLP prote 93.1 0.059 2E-06 57.5 4.4 23 205-227 72-94 (376)
318 1xp8_A RECA protein, recombina 93.1 0.12 4E-06 54.5 6.5 57 192-251 59-117 (366)
319 1htw_A HI0065; nucleotide-bind 93.1 0.052 1.8E-06 49.7 3.3 25 203-227 31-55 (158)
320 1qf9_A UMP/CMP kinase, protein 93.1 0.056 1.9E-06 51.2 3.8 23 205-227 6-28 (194)
321 1gvn_B Zeta; postsegregational 93.1 0.071 2.4E-06 54.3 4.7 25 203-227 31-55 (287)
322 1z6g_A Guanylate kinase; struc 93.1 0.039 1.3E-06 53.8 2.6 24 204-227 22-45 (218)
323 2jeo_A Uridine-cytidine kinase 93.0 0.055 1.9E-06 53.7 3.7 25 203-227 23-47 (245)
324 2plr_A DTMP kinase, probable t 93.0 0.051 1.7E-06 52.5 3.3 22 206-227 5-26 (213)
325 3bh0_A DNAB-like replicative h 93.0 0.19 6.3E-06 52.0 7.8 65 192-261 55-119 (315)
326 3jvv_A Twitching mobility prot 93.0 0.1 3.5E-06 54.8 5.8 117 195-321 115-232 (356)
327 2vli_A Antibiotic resistance p 93.0 0.038 1.3E-06 52.0 2.3 23 205-227 5-27 (183)
328 2cdn_A Adenylate kinase; phosp 92.9 0.052 1.8E-06 52.0 3.1 24 204-227 19-42 (201)
329 2pbr_A DTMP kinase, thymidylat 92.9 0.051 1.7E-06 51.6 3.1 21 207-227 2-22 (195)
330 2r44_A Uncharacterized protein 92.8 0.056 1.9E-06 56.5 3.6 41 184-227 28-68 (331)
331 2pt5_A Shikimate kinase, SK; a 92.8 0.054 1.8E-06 50.1 3.1 21 207-227 2-22 (168)
332 2ck3_D ATP synthase subunit be 92.8 0.18 6.3E-06 54.2 7.5 65 194-260 142-207 (482)
333 4e22_A Cytidylate kinase; P-lo 92.8 0.057 1.9E-06 53.9 3.5 24 204-227 26-49 (252)
334 1iy2_A ATP-dependent metallopr 92.8 0.059 2E-06 54.7 3.7 45 184-228 41-96 (278)
335 1aky_A Adenylate kinase; ATP:A 92.8 0.056 1.9E-06 52.7 3.4 23 205-227 4-26 (220)
336 2p5t_B PEZT; postsegregational 92.8 0.061 2.1E-06 53.7 3.7 25 203-227 30-54 (253)
337 1fx0_B ATP synthase beta chain 92.8 0.17 5.8E-06 54.7 7.2 64 194-259 154-218 (498)
338 1uj2_A Uridine-cytidine kinase 92.8 0.06 2E-06 53.8 3.6 25 203-227 20-44 (252)
339 1cr0_A DNA primase/helicase; R 92.8 0.17 5.8E-06 51.8 7.1 54 203-260 33-86 (296)
340 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.082 2.8E-06 58.2 4.9 42 184-228 23-64 (500)
341 3fwy_A Light-independent proto 92.7 0.06 2E-06 55.5 3.6 41 203-246 46-86 (314)
342 2pt7_A CAG-ALFA; ATPase, prote 92.7 0.13 4.4E-06 53.5 6.1 104 205-320 171-275 (330)
343 2f1r_A Molybdopterin-guanine d 92.7 0.039 1.3E-06 51.2 1.9 22 206-227 3-24 (171)
344 2c9o_A RUVB-like 1; hexameric 92.7 0.086 2.9E-06 57.8 5.0 46 183-228 37-86 (456)
345 2grj_A Dephospho-COA kinase; T 92.7 0.066 2.2E-06 50.8 3.5 25 203-227 10-34 (192)
346 1s96_A Guanylate kinase, GMP k 92.6 0.062 2.1E-06 52.2 3.3 25 204-228 15-39 (219)
347 2i1q_A DNA repair and recombin 92.6 0.15 5E-06 53.0 6.5 64 193-256 85-162 (322)
348 1nn5_A Similar to deoxythymidy 92.6 0.064 2.2E-06 51.9 3.5 24 204-227 8-31 (215)
349 1rj9_A FTSY, signal recognitio 92.6 0.063 2.1E-06 55.1 3.4 24 204-227 101-124 (304)
350 1zd8_A GTP:AMP phosphotransfer 92.5 0.06 2.1E-06 52.8 3.1 23 205-227 7-29 (227)
351 2wwf_A Thymidilate kinase, put 92.5 0.064 2.2E-06 51.8 3.3 23 205-227 10-32 (212)
352 3l0o_A Transcription terminati 92.5 0.09 3.1E-06 54.7 4.4 54 193-247 163-216 (427)
353 1gtv_A TMK, thymidylate kinase 92.5 0.036 1.2E-06 53.7 1.4 22 206-227 1-22 (214)
354 1sq5_A Pantothenate kinase; P- 92.5 0.11 3.7E-06 53.6 5.1 25 203-227 78-102 (308)
355 2f6r_A COA synthase, bifunctio 92.4 0.069 2.4E-06 54.3 3.5 24 203-226 73-96 (281)
356 2i3b_A HCR-ntpase, human cance 92.4 0.057 1.9E-06 51.1 2.6 23 206-228 2-24 (189)
357 2ewv_A Twitching motility prot 92.4 0.26 8.9E-06 52.2 8.0 25 203-227 134-158 (372)
358 1g5t_A COB(I)alamin adenosyltr 92.3 0.061 2.1E-06 50.7 2.7 125 206-333 29-179 (196)
359 2hf9_A Probable hydrogenase ni 92.3 0.092 3.1E-06 51.3 4.2 26 203-228 36-61 (226)
360 2pez_A Bifunctional 3'-phospho 92.3 0.074 2.5E-06 49.8 3.3 24 204-227 4-27 (179)
361 2z0h_A DTMP kinase, thymidylat 92.3 0.068 2.3E-06 50.9 3.1 21 207-227 2-22 (197)
362 1m7g_A Adenylylsulfate kinase; 92.2 0.081 2.8E-06 51.1 3.6 25 203-227 23-47 (211)
363 2v54_A DTMP kinase, thymidylat 92.2 0.068 2.3E-06 51.2 3.1 23 205-227 4-26 (204)
364 2onk_A Molybdate/tungstate ABC 92.2 0.073 2.5E-06 52.5 3.3 24 203-227 23-46 (240)
365 1zak_A Adenylate kinase; ATP:A 92.2 0.064 2.2E-06 52.3 2.9 24 204-227 4-27 (222)
366 4a74_A DNA repair and recombin 92.2 0.072 2.5E-06 52.2 3.2 25 203-227 23-47 (231)
367 1g41_A Heat shock protein HSLU 92.2 0.071 2.4E-06 57.4 3.4 45 183-227 15-72 (444)
368 3lnc_A Guanylate kinase, GMP k 92.2 0.049 1.7E-06 53.6 2.0 23 204-226 26-48 (231)
369 1vht_A Dephospho-COA kinase; s 92.2 0.085 2.9E-06 51.3 3.7 22 205-226 4-25 (218)
370 2ehv_A Hypothetical protein PH 92.2 0.07 2.4E-06 53.1 3.1 24 203-226 28-51 (251)
371 3d3q_A TRNA delta(2)-isopenten 92.1 0.075 2.6E-06 55.0 3.3 22 206-227 8-29 (340)
372 3fb4_A Adenylate kinase; psych 92.1 0.074 2.5E-06 51.6 3.2 21 207-227 2-22 (216)
373 3b9q_A Chloroplast SRP recepto 92.0 0.084 2.9E-06 54.1 3.6 25 203-227 98-122 (302)
374 1np6_A Molybdopterin-guanine d 92.0 0.083 2.8E-06 49.1 3.2 24 204-227 5-28 (174)
375 3a8t_A Adenylate isopentenyltr 92.0 0.091 3.1E-06 54.1 3.8 24 204-227 39-62 (339)
376 3tlx_A Adenylate kinase 2; str 92.0 0.09 3.1E-06 52.1 3.6 25 203-227 27-51 (243)
377 3tif_A Uncharacterized ABC tra 92.0 0.077 2.6E-06 52.2 3.1 25 203-227 29-53 (235)
378 3nwj_A ATSK2; P loop, shikimat 92.0 0.065 2.2E-06 53.2 2.6 23 205-227 48-70 (250)
379 2px0_A Flagellar biosynthesis 92.0 0.081 2.8E-06 54.1 3.4 24 204-227 104-127 (296)
380 3dl0_A Adenylate kinase; phosp 91.9 0.08 2.7E-06 51.4 3.2 21 207-227 2-22 (216)
381 2pcj_A ABC transporter, lipopr 91.9 0.076 2.6E-06 51.8 3.0 24 204-227 29-52 (224)
382 3sr0_A Adenylate kinase; phosp 91.7 0.083 2.8E-06 50.7 3.0 21 207-227 2-22 (206)
383 2wsm_A Hydrogenase expression/ 91.7 0.098 3.3E-06 50.9 3.6 26 203-228 28-53 (221)
384 2cbz_A Multidrug resistance-as 91.6 0.089 3E-06 51.8 3.1 25 203-227 29-53 (237)
385 3e70_C DPA, signal recognition 91.6 0.14 4.8E-06 53.0 4.7 26 202-227 126-151 (328)
386 3b85_A Phosphate starvation-in 91.6 0.076 2.6E-06 51.1 2.5 23 205-227 22-44 (208)
387 1pzn_A RAD51, DNA repair and r 91.6 0.2 7E-06 52.5 6.0 49 203-251 129-180 (349)
388 1vma_A Cell division protein F 91.6 0.1 3.5E-06 53.5 3.6 39 203-244 102-140 (306)
389 3ake_A Cytidylate kinase; CMP 91.5 0.095 3.2E-06 50.4 3.2 21 207-227 4-24 (208)
390 3gfo_A Cobalt import ATP-bindi 91.5 0.091 3.1E-06 52.9 3.1 24 204-227 33-56 (275)
391 2yhs_A FTSY, cell division pro 91.5 0.16 5.5E-06 55.2 5.1 24 204-227 292-315 (503)
392 3exa_A TRNA delta(2)-isopenten 91.5 0.11 3.7E-06 52.9 3.5 23 205-227 3-25 (322)
393 1b0u_A Histidine permease; ABC 91.5 0.093 3.2E-06 52.6 3.1 25 203-227 30-54 (262)
394 3r20_A Cytidylate kinase; stru 91.4 0.098 3.3E-06 51.1 3.1 23 205-227 9-31 (233)
395 4a1f_A DNAB helicase, replicat 91.4 0.38 1.3E-05 49.8 7.8 66 192-262 33-98 (338)
396 3dm5_A SRP54, signal recogniti 91.4 0.45 1.5E-05 51.1 8.5 24 204-227 99-122 (443)
397 3crm_A TRNA delta(2)-isopenten 91.4 0.1 3.5E-06 53.6 3.3 22 206-227 6-27 (323)
398 1ji0_A ABC transporter; ATP bi 91.3 0.1 3.4E-06 51.6 3.1 24 204-227 31-54 (240)
399 4g1u_C Hemin import ATP-bindin 91.3 0.099 3.4E-06 52.5 3.1 25 203-227 35-59 (266)
400 2olj_A Amino acid ABC transpor 91.3 0.1 3.5E-06 52.3 3.1 25 203-227 48-72 (263)
401 2q6t_A DNAB replication FORK h 91.2 0.33 1.1E-05 52.9 7.5 71 187-261 182-252 (444)
402 1sgw_A Putative ABC transporte 91.2 0.087 3E-06 50.9 2.5 24 204-227 34-57 (214)
403 2pze_A Cystic fibrosis transme 91.2 0.1 3.5E-06 51.1 3.1 24 204-227 33-56 (229)
404 2og2_A Putative signal recogni 91.2 0.11 3.9E-06 54.3 3.6 24 204-227 156-179 (359)
405 1g8p_A Magnesium-chelatase 38 91.2 0.09 3.1E-06 55.3 2.8 44 184-228 25-68 (350)
406 1c9k_A COBU, adenosylcobinamid 91.2 0.19 6.5E-06 46.7 4.7 20 208-227 2-21 (180)
407 1mv5_A LMRA, multidrug resista 91.2 0.11 3.8E-06 51.4 3.3 25 203-227 26-50 (243)
408 1g6h_A High-affinity branched- 91.2 0.1 3.6E-06 52.1 3.1 24 204-227 32-55 (257)
409 2d2e_A SUFC protein; ABC-ATPas 91.1 0.11 3.7E-06 51.7 3.2 24 204-227 28-51 (250)
410 3foz_A TRNA delta(2)-isopenten 91.1 0.13 4.6E-06 52.1 3.8 25 203-227 8-32 (316)
411 2ff7_A Alpha-hemolysin translo 91.1 0.11 3.7E-06 51.6 3.1 24 204-227 34-57 (247)
412 2xb4_A Adenylate kinase; ATP-b 91.1 0.11 3.7E-06 50.7 3.1 21 207-227 2-22 (223)
413 3be4_A Adenylate kinase; malar 91.0 0.11 3.7E-06 50.5 3.1 22 206-227 6-27 (217)
414 1e4v_A Adenylate kinase; trans 91.0 0.11 3.8E-06 50.3 3.1 21 207-227 2-22 (214)
415 1ak2_A Adenylate kinase isoenz 91.0 0.13 4.4E-06 50.6 3.5 24 204-227 15-38 (233)
416 1vpl_A ABC transporter, ATP-bi 90.9 0.11 3.9E-06 51.7 3.1 25 203-227 39-63 (256)
417 2v9p_A Replication protein E1; 90.9 0.17 5.8E-06 51.6 4.4 25 203-227 124-148 (305)
418 4eaq_A DTMP kinase, thymidylat 90.9 0.19 6.5E-06 49.2 4.7 25 204-228 25-49 (229)
419 2wji_A Ferrous iron transport 90.9 0.14 4.8E-06 47.1 3.5 23 206-228 4-26 (165)
420 2ghi_A Transport protein; mult 90.9 0.12 4E-06 51.8 3.1 25 203-227 44-68 (260)
421 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.12 4E-06 50.7 3.2 48 204-256 22-69 (235)
422 2r6a_A DNAB helicase, replicat 90.8 0.3 1E-05 53.4 6.7 69 187-259 185-253 (454)
423 2ixe_A Antigen peptide transpo 90.8 0.12 4E-06 52.1 3.1 25 203-227 43-67 (271)
424 2zu0_C Probable ATP-dependent 90.8 0.12 4E-06 52.0 3.1 25 203-227 44-68 (267)
425 1a7j_A Phosphoribulokinase; tr 90.8 0.076 2.6E-06 54.1 1.7 24 204-227 4-27 (290)
426 3cf2_A TER ATPase, transitiona 90.8 0.52 1.8E-05 54.7 8.8 141 184-347 478-661 (806)
427 1pgv_A TMD-1, tropomodulin TMD 90.8 0.029 9.9E-07 53.1 -1.4 68 587-654 37-111 (197)
428 3end_A Light-independent proto 90.8 0.21 7E-06 51.5 5.0 43 203-248 39-81 (307)
429 2qi9_C Vitamin B12 import ATP- 90.7 0.12 4.2E-06 51.2 3.1 24 204-227 25-48 (249)
430 1zu4_A FTSY; GTPase, signal re 90.7 0.14 4.8E-06 52.9 3.6 39 203-244 103-141 (320)
431 3p32_A Probable GTPase RV1496/ 90.6 0.2 7E-06 52.7 5.0 26 202-227 76-101 (355)
432 2v3c_C SRP54, signal recogniti 90.6 0.14 4.7E-06 55.4 3.6 24 204-227 98-121 (432)
433 2yz2_A Putative ABC transporte 90.6 0.13 4.4E-06 51.7 3.1 25 203-227 31-55 (266)
434 1pgv_A TMD-1, tropomodulin TMD 90.6 0.035 1.2E-06 52.5 -1.0 112 616-751 39-167 (197)
435 3lda_A DNA repair protein RAD5 90.6 0.46 1.6E-05 50.6 7.6 62 192-253 164-229 (400)
436 2nq2_C Hypothetical ABC transp 90.6 0.13 4.4E-06 51.2 3.1 24 204-227 30-53 (253)
437 2ihy_A ABC transporter, ATP-bi 90.5 0.13 4.4E-06 52.0 3.1 25 203-227 45-69 (279)
438 3zvl_A Bifunctional polynucleo 90.5 0.14 4.8E-06 55.2 3.6 25 203-227 256-280 (416)
439 1oix_A RAS-related protein RAB 90.5 0.13 4.6E-06 48.6 3.1 24 205-228 29-52 (191)
440 1ltq_A Polynucleotide kinase; 90.5 0.14 4.6E-06 52.7 3.3 22 206-227 3-24 (301)
441 1svm_A Large T antigen; AAA+ f 90.5 0.22 7.6E-06 52.6 5.0 25 203-227 167-191 (377)
442 2eyu_A Twitching motility prot 90.4 0.14 4.9E-06 51.1 3.3 25 203-227 23-47 (261)
443 2xxa_A Signal recognition part 90.4 0.19 6.5E-06 54.2 4.5 41 203-245 98-138 (433)
444 2zej_A Dardarin, leucine-rich 90.4 0.13 4.5E-06 48.2 2.9 21 207-227 4-24 (184)
445 2vp4_A Deoxynucleoside kinase; 90.3 0.14 4.7E-06 50.2 3.1 25 203-227 18-42 (230)
446 2dyk_A GTP-binding protein; GT 90.3 0.17 5.7E-06 46.0 3.4 23 206-228 2-24 (161)
447 1nlf_A Regulatory protein REPA 90.1 0.14 4.7E-06 52.0 3.0 24 204-227 29-52 (279)
448 1q3t_A Cytidylate kinase; nucl 90.0 0.17 5.9E-06 49.8 3.5 25 203-227 14-38 (236)
449 3llm_A ATP-dependent RNA helic 90.0 0.75 2.6E-05 45.0 8.2 31 193-226 67-97 (235)
450 1yrb_A ATP(GTP)binding protein 90.0 0.17 5.9E-06 50.6 3.6 24 204-227 13-36 (262)
451 2qmh_A HPR kinase/phosphorylas 90.0 0.17 5.7E-06 47.7 3.1 23 205-227 34-56 (205)
452 1u0j_A DNA replication protein 90.0 0.28 9.5E-06 48.7 4.9 36 192-227 90-126 (267)
453 2f9l_A RAB11B, member RAS onco 89.9 0.15 5.2E-06 48.6 2.9 24 205-228 5-28 (199)
454 3kl4_A SRP54, signal recogniti 89.9 0.23 7.7E-06 53.4 4.5 39 204-245 96-134 (433)
455 3nh6_A ATP-binding cassette SU 89.9 0.13 4.4E-06 52.6 2.5 25 203-227 78-102 (306)
456 1ls1_A Signal recognition part 89.8 0.18 6.2E-06 51.4 3.5 39 204-245 97-135 (295)
457 3vkw_A Replicase large subunit 89.7 1 3.5E-05 48.1 9.4 106 203-321 159-271 (446)
458 3bgw_A DNAB-like replicative h 89.7 0.36 1.2E-05 52.4 6.0 70 187-261 179-248 (444)
459 3sop_A Neuronal-specific septi 89.6 0.17 5.8E-06 50.9 3.1 22 207-228 4-25 (270)
460 2pjz_A Hypothetical protein ST 89.6 0.17 5.9E-06 50.5 3.1 23 205-227 30-52 (263)
461 2lkc_A Translation initiation 89.5 0.26 8.9E-06 45.6 4.2 26 203-228 6-31 (178)
462 2zts_A Putative uncharacterize 89.4 0.32 1.1E-05 48.1 5.0 52 203-258 28-79 (251)
463 3eph_A TRNA isopentenyltransfe 89.4 0.19 6.7E-06 52.9 3.5 23 205-227 2-24 (409)
464 3io3_A DEHA2D07832P; chaperone 89.4 0.38 1.3E-05 50.2 5.7 48 202-251 15-63 (348)
465 2dr3_A UPF0273 protein PH0284; 89.4 0.18 6.3E-06 49.8 3.2 50 203-257 21-70 (247)
466 2wjg_A FEOB, ferrous iron tran 89.4 0.21 7.1E-06 46.9 3.4 23 206-228 8-30 (188)
467 2ocp_A DGK, deoxyguanosine kin 89.3 0.2 6.9E-06 49.5 3.4 23 205-227 2-24 (241)
468 3k1j_A LON protease, ATP-depen 89.2 0.23 8E-06 56.5 4.2 41 184-227 42-82 (604)
469 3v9p_A DTMP kinase, thymidylat 89.2 0.28 9.6E-06 47.7 4.2 23 205-227 25-47 (227)
470 2bbs_A Cystic fibrosis transme 89.1 0.19 6.4E-06 51.1 3.0 25 203-227 62-86 (290)
471 2ce2_X GTPase HRAS; signaling 89.1 0.19 6.5E-06 45.7 2.8 22 207-228 5-26 (166)
472 2afh_E Nitrogenase iron protei 89.1 0.33 1.1E-05 49.4 4.9 40 205-247 2-41 (289)
473 2nzj_A GTP-binding protein REM 89.0 0.2 6.9E-06 46.2 3.0 24 205-228 4-27 (175)
474 1z2a_A RAS-related protein RAB 88.9 0.2 6.8E-06 45.8 2.9 23 206-228 6-28 (168)
475 3cmu_A Protein RECA, recombina 88.9 0.22 7.5E-06 63.3 3.9 86 203-296 1425-1515(2050)
476 1z08_A RAS-related protein RAB 88.7 0.25 8.7E-06 45.3 3.4 23 206-228 7-29 (170)
477 1f6b_A SAR1; gtpases, N-termin 88.7 0.34 1.2E-05 46.0 4.4 24 204-227 24-47 (198)
478 4h09_A Hypothetical leucine ri 88.6 3.3 0.00011 43.7 12.7 100 668-774 239-342 (379)
479 1cp2_A CP2, nitrogenase iron p 88.6 0.38 1.3E-05 48.3 4.9 39 206-247 2-40 (269)
480 1nij_A Hypothetical protein YJ 88.6 0.2 7E-06 51.8 3.0 24 204-227 3-26 (318)
481 3con_A GTPase NRAS; structural 88.6 0.22 7.4E-06 46.9 2.9 22 207-228 23-44 (190)
482 2j37_W Signal recognition part 88.6 0.34 1.2E-05 53.2 4.8 25 203-227 99-123 (504)
483 3q72_A GTP-binding protein RAD 88.6 0.21 7.1E-06 45.7 2.7 21 207-227 4-24 (166)
484 3tui_C Methionine import ATP-b 88.5 0.22 7.6E-06 52.0 3.1 25 203-227 52-76 (366)
485 1u8z_A RAS-related protein RAL 88.5 0.23 7.8E-06 45.3 2.9 23 206-228 5-27 (168)
486 3gqb_B V-type ATP synthase bet 88.5 0.29 9.9E-06 52.3 4.0 66 194-259 136-210 (464)
487 2ged_A SR-beta, signal recogni 88.4 0.27 9.3E-06 46.3 3.5 25 204-228 47-71 (193)
488 3zq6_A Putative arsenical pump 88.4 0.35 1.2E-05 50.2 4.6 47 203-252 11-58 (324)
489 1p5z_B DCK, deoxycytidine kina 88.4 0.18 6.3E-06 50.5 2.4 25 203-227 22-46 (263)
490 3fvq_A Fe(3+) IONS import ATP- 88.3 0.23 7.8E-06 51.9 3.1 25 203-227 28-52 (359)
491 3kta_A Chromosome segregation 88.3 0.24 8.4E-06 46.3 3.1 21 206-226 27-47 (182)
492 1q57_A DNA primase/helicase; d 88.3 0.64 2.2E-05 51.6 6.9 66 193-262 230-295 (503)
493 1c1y_A RAS-related protein RAP 88.2 0.27 9.4E-06 44.8 3.3 22 207-228 5-26 (167)
494 2gj8_A MNME, tRNA modification 88.1 0.24 8.1E-06 45.9 2.8 23 206-228 5-27 (172)
495 3ug7_A Arsenical pump-driving 88.1 0.69 2.4E-05 48.4 6.7 43 203-248 24-66 (349)
496 1ek0_A Protein (GTP-binding pr 88.1 0.25 8.6E-06 45.2 2.9 22 207-228 5-26 (170)
497 1z0j_A RAB-22, RAS-related pro 88.1 0.25 8.5E-06 45.3 2.9 22 207-228 8-29 (170)
498 2erx_A GTP-binding protein DI- 88.0 0.31 1.1E-05 44.7 3.6 22 207-228 5-26 (172)
499 2yv5_A YJEQ protein; hydrolase 88.0 0.37 1.3E-05 49.4 4.4 31 192-226 156-186 (302)
500 1lw7_A Transcriptional regulat 88.0 0.26 8.9E-06 52.1 3.3 23 205-227 170-192 (365)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.9e-45 Score=415.76 Aligned_cols=307 Identities=17% Similarity=0.171 Sum_probs=237.1
Q ss_pred cccccchhhHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHhc--ccccccccCCceEEEEecCCC--CHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCR--DHQVTSYFNNRILFLTVSQSP--NVEQLRAKV 257 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLA~~v~~--~~~~~~~F~~~~~wv~v~~~~--~~~~l~~~i 257 (830)
..+||+.++++|.++|... ++++||+|+||||+||||||+++|+ +.+++.+|+. ++|+++++.+ ++..++..|
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS-IVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSE-EEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCc-EEEEEECCCCCCCHHHHHHHH
Confidence 3369999999999999653 3689999999999999999999998 6789999975 5699999985 889999999
Q ss_pred HHhhcCCCCC-CCCCC----ccc-chHHHHhhcCC-cEEEEEeCCCChHhHHHhhhcCCCceEEEEeccccccc----cc
Q 003321 258 WGFVSGCDSM-EPNYV----IPH-WNLQIQSKLGS-RCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFSTV----LN 326 (830)
Q Consensus 258 ~~~l~~~~~~-~~~~~----~~~-~~~~~~~l~~k-r~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~~~~----~~ 326 (830)
+.++...... ..... ... .....+.+.++ ||||||||||+.+++ .+. ..+||+||||||++.++. ..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-~~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-QELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-HHTTCEEEEEESBGGGGGGCCSCE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-ccCCCEEEEEcCCHHHHHHcCCCC
Confidence 9999765321 11111 111 23344556785 999999999998866 222 338999999999998872 23
Q ss_pred ceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhccCCCCcc
Q 003321 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICE 406 (830)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~ 406 (830)
.+|++++|+.+|||+||.++||+... ....++++++|+++|+|+||||+++|+.|+.+. |+.+ +.+..... .
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~--~ 357 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE--S 357 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH--H
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh--c
Confidence 57999999999999999999987642 345667999999999999999999999998773 4433 22221110 0
Q ss_pred cchhhHHHHHHHhHhcCChhHHHHHh-----------hhCCCCCCCccCHHHHHHHHHHh--cCCC--------HHHHHH
Q 003321 407 SHENNLLDRMAISIQYLPKKVKECFL-----------DLGSFPEDKKIPLEVLINMWVEI--HDLD--------EEEAFA 465 (830)
Q Consensus 407 ~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~Wia~--~~~~--------~~~~~~ 465 (830)
.....+..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ |++. ++.+.
T Consensus 358 ~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 358 RGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp HCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred ccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 01345778889999999999999999 999999999998 8999999 6553 34455
Q ss_pred HHHHHhhhhhHHHHhhhhccCCcccccccccchhhHHHHHHHHHhhccCCc
Q 003321 466 ILVELSDRNLLKIVKDARRAGDMYSSYYEISVTQHDVLRDLALHLSNQENI 516 (830)
Q Consensus 466 ~l~~L~~r~l~~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~e~~ 516 (830)
++++|+++||++....+ . ..+|+|||+||+||++++.++++
T Consensus 433 ~l~~L~~rsLl~~~~~~----~------~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM----P------VLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECS----S------SCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHcCCeeEecCC----C------ceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999865421 1 12589999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.2e-40 Score=378.86 Aligned_cols=285 Identities=21% Similarity=0.313 Sum_probs=227.0
Q ss_pred cccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
....|||+.++++|.++|.+.++.++|+|+||||+||||||+++|++.+++.+|+.+++|+++++.++...++..+++.+
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34559999999999999986567899999999999999999999998889999999889999999999888888877654
Q ss_pred cCCC---CCCCC---C---Cccc----chHHHHhhcCCcEEEEEeCCCChHhHHHhhhcCCCceEEEEecccccc---cc
Q 003321 262 SGCD---SMEPN---Y---VIPH----WNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST---VL 325 (830)
Q Consensus 262 ~~~~---~~~~~---~---~~~~----~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~~~---~~ 325 (830)
.... ..... . ..+. +...++...++|+||||||||+.++|+.+. +||+||||||++.++ ..
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcCC
Confidence 3211 00000 0 0011 111122236899999999999999999874 899999999999876 23
Q ss_pred cceEEcc------CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCC--ChHHHHHHHHH
Q 003321 326 NDTYEVE------LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQ--PEMYWTSAKKR 397 (830)
Q Consensus 326 ~~~~~l~------~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~--~~~~w~~~l~~ 397 (830)
...|+++ .|+.+|||+||+.+ ++.. .+++..+| |+|+||||+++|++|+++ +...|+..
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHH-cCCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 3467787 89999999999988 3332 12244444 999999999999999987 56778652
Q ss_pred hccCCCCcccchhhHHHHHHHhHhcCChhH-HHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhH
Q 003321 398 LSKGEPICESHENNLLDRMAISIQYLPKKV-KECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLL 476 (830)
Q Consensus 398 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~ 476 (830)
....+..+|++||+.||+++ |.||+|||+||+++.|+.+.++.+|++++ ++.+..++++|+++||+
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---eedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---KSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---SHHHHHHHHHHHTSSSS
T ss_pred ----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---HHHHHHHHHHHHhhCCE
Confidence 13679999999999999999 99999999999999999999999998765 45688999999999999
Q ss_pred HHHhhhhccCCcccccccccchhhHHHHHHH
Q 003321 477 KIVKDARRAGDMYSSYYEISVTQHDVLRDLA 507 (830)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~~mHdli~~~~ 507 (830)
+.... ...|+|||++++++
T Consensus 418 q~d~~------------~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPK------------ESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSS------------SSEEBCCCHHHHHH
T ss_pred EEeCC------------CCEEEehHHHHHHh
Confidence 86211 12589999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-37 Score=388.88 Aligned_cols=313 Identities=24% Similarity=0.358 Sum_probs=244.9
Q ss_pred CCcccccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhccccc-ccccCCceEEEEecCCCC--HHHHHH
Q 003321 180 LGNLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV-TSYFNNRILFLTVSQSPN--VEQLRA 255 (830)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~-~~~F~~~~~wv~v~~~~~--~~~l~~ 255 (830)
..+..+|||+.++++|.++|... +++++|+|+||||+||||||+++|++.++ ..+|+..++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34557999999999999999643 67899999999999999999999987543 677988999999998654 334456
Q ss_pred HHHHhhcCCCCCCC--CCCcccchHHH-Hhhc--CCcEEEEEeCCCChHhHHHhhhcCCCceEEEEecccccc----ccc
Q 003321 256 KVWGFVSGCDSMEP--NYVIPHWNLQI-QSKL--GSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST----VLN 326 (830)
Q Consensus 256 ~i~~~l~~~~~~~~--~~~~~~~~~~~-~~l~--~kr~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~~~----~~~ 326 (830)
.++..+........ ....+.....+ ..+. ++|+||||||||+.++|+.+ .+||+||||||++.++ ...
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---CSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---cCCCEEEEEcCCHHHHHhhcCCc
Confidence 67776654432111 11122222222 2234 45999999999999888876 6799999999999875 345
Q ss_pred ceEEccC-CCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhccCCCCc
Q 003321 327 DTYEVEL-LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPIC 405 (830)
Q Consensus 327 ~~~~l~~-L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~ 405 (830)
..++++. |+.+||++||...++... ...++.+++|+++|+|+||||+++|++|+.++ ..|+.+++.+.......
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 7889996 999999999999885432 22345799999999999999999999999876 47999999886543211
Q ss_pred -----ccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhHHHHh
Q 003321 406 -----ESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIVK 480 (830)
Q Consensus 406 -----~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~~~~~ 480 (830)
......+..++.+||+.||+++|.||+|||+||+++.|+.+.++.+|. ..++.+..++++|++++|++...
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~----~~~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWD----LETEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHT----CCHHHHHHHHHHHHHTTSCEEEE
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhC----CCHHHHHHHHHHHHhccceEEec
Confidence 111356999999999999999999999999999999999999999994 34678999999999999998543
Q ss_pred hhhccCCcccccccccchhhHHHHHHHHHhhccC
Q 003321 481 DARRAGDMYSSYYEISVTQHDVLRDLALHLSNQE 514 (830)
Q Consensus 481 ~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~~e 514 (830)
. |.. .+|+||+++|++++..+.++
T Consensus 429 ~----~~~------~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 N----GKS------FCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp S----SSS------EEEECCHHHHHHHHHHTGGG
T ss_pred C----CCc------eEEEecHHHHHHHHhhhhHH
Confidence 2 111 24899999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=335.51 Aligned_cols=309 Identities=26% Similarity=0.377 Sum_probs=233.1
Q ss_pred CcccccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhccccc-ccccCCceEEEEecCCCCHHHHHHHH-
Q 003321 181 GNLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV-TSYFNNRILFLTVSQSPNVEQLRAKV- 257 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~-~~~F~~~~~wv~v~~~~~~~~l~~~i- 257 (830)
.+..+|||+.+.++|.++|... ++.++|+|+||||+||||||++++++..+ ..+|+..++|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3456899999999999999743 56899999999999999999999987666 7899878899999876 333444433
Q ss_pred --HHhhcCCCCC--CCCCCcccch-HHHHhhc--CCcEEEEEeCCCChHhHHHhhhcCCCceEEEEeccccccc--ccce
Q 003321 258 --WGFVSGCDSM--EPNYVIPHWN-LQIQSKL--GSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFSTV--LNDT 328 (830)
Q Consensus 258 --~~~l~~~~~~--~~~~~~~~~~-~~~~~l~--~kr~LlVlDdv~~~~~~~~l~~~~~gs~iivTtr~~~~~~--~~~~ 328 (830)
...+...... .......... .....+. ++++||||||||+.+.++.+ .+|++||||||+..+.. ....
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---~~~~~ilvTsR~~~~~~~~~~~~ 277 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---DSQCQILLTTRDKSVTDSVMGPK 277 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---CSSCEEEEEESCGGGGTTCCSCE
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---cCCCeEEEECCCcHHHHhcCCCc
Confidence 3344321111 0111111111 2222232 37999999999998877765 57999999999998762 3456
Q ss_pred EEcc---CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhccCCCC-
Q 003321 329 YEVE---LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPI- 404 (830)
Q Consensus 329 ~~l~---~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~- 404 (830)
+++. +|+.+|+++||...++... ...++.+.+|+++|+|+||||+.+|++++.+. ..|..+++.+......
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 6664 7999999999999986421 12235789999999999999999999998764 3799999888654311
Q ss_pred ----cccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhHHHHh
Q 003321 405 ----CESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIVK 480 (830)
Q Consensus 405 ----~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~~~~~~~~l~~L~~r~l~~~~~ 480 (830)
.......+..++..||+.||++.|.||++||+||+++.|+.+.++.+|. ...+.+..++.+|++++|++...
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~----~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWD----METEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHT----CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred hhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhc----cCHHHHHHHHHHHHhCcCeEEec
Confidence 1112357899999999999999999999999999999999999999994 34567889999999999997432
Q ss_pred hhhccCCcccccccccchhhHHHHHHHHHhhc
Q 003321 481 DARRAGDMYSSYYEISVTQHDVLRDLALHLSN 512 (830)
Q Consensus 481 ~~~~~g~~~~~~~~~~~~mHdli~~~~~~~~~ 512 (830)
+ |. ...|+||+++|++++....
T Consensus 429 ~----~~------~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 N----GK------SFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp E----TT------EEEEECCHHHHHHHHHHTG
T ss_pred C----CC------ccEEEEcHHHHHHHHhhhh
Confidence 1 11 1258999999999998743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.5e-22 Score=215.95 Aligned_cols=226 Identities=25% Similarity=0.357 Sum_probs=195.6
Q ss_pred CceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCce
Q 003321 566 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQK 645 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 645 (830)
++++.|.+..+. ...+|..+.++++|++|++.++... .....++++++|++|++++|.+..+|..+..+++|++
T Consensus 81 ~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 445555554443 4478888999999999999988654 2224578899999999999999999999999999999
Q ss_pred EEeeeccccccccccccC-----cCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCC
Q 003321 646 ISFVLCKINNSLDQSVVD-----LPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQ 720 (830)
Q Consensus 646 L~l~~~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 720 (830)
|++++|.....++..+.. ....+++|++|++++|. +..+|..++.+++|++|++++|. +..+|..++.+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCC
Confidence 999998877666554321 12348899999999984 66999999999999999999986 567888999999999
Q ss_pred EEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 721 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 721 ~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
+|++++|.....+|..++.+++|++|+|++|+....+|..++++++|+.|+|++|+.++.+|..++++++|+.+.+..+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988766
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.7e-20 Score=200.04 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=188.6
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCC
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 668 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 668 (830)
...+++.|++.++.... ....+.++++|++|+|++|.+..+|..+..+++|++|++++|.+. .++.. ...+
T Consensus 79 ~~~~l~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~----l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS----IASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSS----CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG----GGGC
T ss_pred cccceeEEEccCCCchh----cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH----HhcC
Confidence 34789999998876542 224467899999999999999999999999999999999999876 33333 3568
Q ss_pred CccceeccccccccCccccccCC---------CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcC
Q 003321 669 PCLTELTFDHCDDLMKLPPSICG---------LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICE 739 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~~---------l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 739 (830)
++|++|++++|..++.+|..++. +++|++|++++|. +..+|..++.+++|++|++++|. +..+|..++.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhcc
Confidence 99999999999999999988765 9999999999986 56899999999999999999975 5578888999
Q ss_pred CCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhh-HHHHhhhCCCceeee
Q 003321 740 LVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWA-WKDLEKTLPNLHVQV 818 (830)
Q Consensus 740 l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~-~~~l~~~lp~L~~~~ 818 (830)
+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+.++++|+.|++++|.... .+...+.+|+|+...
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999999999999999999999999999999999999999999999999999999999864333 344456888887764
Q ss_pred c
Q 003321 819 P 819 (830)
Q Consensus 819 ~ 819 (830)
.
T Consensus 308 l 308 (328)
T 4fcg_A 308 V 308 (328)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.7e-20 Score=198.77 Aligned_cols=209 Identities=17% Similarity=0.225 Sum_probs=128.0
Q ss_pred ccChhhhhcccCceEEEcc-ccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccCCCceEEeeeccccccccc
Q 003321 582 FLPPFIENMEKLRALIVIN-YSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQ 659 (830)
Q Consensus 582 ~lp~~i~~l~~Lr~L~l~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 659 (830)
.+|..+.++++|++|++.+ +.... .....+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVG---PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEES---CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccc---cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 4566666777777777663 32211 11233556667777777777666 5666666677777777766665543333
Q ss_pred cccCcCCCCCccceeccccccccCccccccCCCC-CCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhc
Q 003321 660 SVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ-SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARIC 738 (830)
Q Consensus 660 ~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~ 738 (830)
.+ ..+++|++|++++|.....+|..++.++ +|++|++++|.....+|..++.++ |+.|++++|......|..+.
T Consensus 144 ~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 144 SI----SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp GG----GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred HH----hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 22 3456677777776654446666666666 677777776654445666666665 77777766655555666666
Q ss_pred CCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 739 ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 739 ~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
.+++|++|++++|.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 66777777776654333333 3666666777777766644466666666667776666655
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=7.2e-20 Score=193.96 Aligned_cols=246 Identities=17% Similarity=0.194 Sum_probs=200.3
Q ss_pred cceEEEeeeCCccc---ccccccCCCceEEEEeeC-ccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccc
Q 003321 544 NAQIVSIHTGDMRE---MDWFRMEFPKAEVLILNF-SSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTN 619 (830)
Q Consensus 544 ~~~~lsi~~~~~~~---~~~~~~~~~~~~~l~l~~-~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~ 619 (830)
.++.+.+....+.. +...-..+++++.|.+.. +.. ...+|..+.++++|++|++.++..... ....+.++++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITHTNVSGA---IPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGGGGCTTCSEEEEEEECCEEE---CCGGGGGCTT
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhHhcCCCCCEEECcCCeeCCc---CCHHHhCCCC
Confidence 46667776665542 222234578889988874 332 446888999999999999998865422 2235778999
Q ss_pred cCeeeecccccC-ccCCCccccCCCceEEeeeccccccccccccCcCCCCC-ccceeccccccccCccccccCCCCCCCE
Q 003321 620 LRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP-CLTELTFDHCDDLMKLPPSICGLQSLKN 697 (830)
Q Consensus 620 L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 697 (830)
|++|++++|.+. .+|..+..+++|++|++++|.+...++..+ ..++ +|+.|++++|.....+|..++.++ |++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 999999999998 788999999999999999998775555444 3355 899999999976668899999987 999
Q ss_pred EEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccC
Q 003321 698 LSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 698 L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
|++++|......|..++.+++|+.|++++|.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|..
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999987667888999999999999999876555554 88999999999999876668999999999999999999997
Q ss_pred CccCCccccccccCceeecCchh
Q 003321 778 IWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 778 l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
.+.+|.. .++++|+.+++.+|.
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCC-ccccccChHHhcCCC
Confidence 7788876 889999999988774
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=8.1e-19 Score=209.45 Aligned_cols=227 Identities=17% Similarity=0.193 Sum_probs=161.2
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L 643 (830)
+++++.|.+..+.. ...+|..+.++++|++|++.++..... ....+..+++|++|++++|.+. .+|..+..+++|
T Consensus 417 l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 417 CSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGE---IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp CTTCCEEECCSSEE-ESCCCGGGGGCTTCCEEECCSSCCCSC---CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCCCCEEECcCCcc-cCcccHHHhcCCCCCEEECCCCcccCc---CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 45556655544432 235566677777777777766543321 1234566777788888877777 567777777888
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchh-----------
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPAD----------- 712 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~----------- 712 (830)
++|++++|.+...++..+ ..+++|++|++++|...+.+|..++.+++|++|++++|.....+|..
T Consensus 493 ~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWI----GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CEEEccCCccCCcCChHH----hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 888887777665444333 44677888888888766677888888888888888877654444432
Q ss_pred -----------------------------------------------------------cCCCCCCCEEEcccCCCCCcc
Q 003321 713 -----------------------------------------------------------IGKMKSLQILRLYACPHLRTL 733 (830)
Q Consensus 713 -----------------------------------------------------------i~~l~~L~~L~l~~~~~l~~l 733 (830)
++.+++|+.|++++|.....+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 334567788888887777788
Q ss_pred chhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 734 PARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 734 p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|..++.+++|+.|+|++|.....+|..++++++|+.|+|++|...+.+|..+.++++|+.|++++|
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 888888888888888887766688888888888888888888877788888888888888888766
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=1.1e-18 Score=208.39 Aligned_cols=246 Identities=19% Similarity=0.193 Sum_probs=178.3
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L 643 (830)
++.++.|.+..+.. ...+|..+.++++|++|++.++.... .....+.++++|++|++++|.+. .+|..+..+++|
T Consensus 393 ~~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEE-EEECCGGGGGCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCcc-ccccCHHHhcCCCCCEEECcCCcccC---cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 45667666655543 23577788888888888887765332 22244677888888888888887 677778888888
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 723 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 723 (830)
++|++++|.+....+..+ ..+++|+.|++++|.....+|..++.+++|++|+|++|.....+|..++.+++|+.|+
T Consensus 469 ~~L~L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred eEEEecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 888888887765544433 4578888888888876668888888888888888888877667888888888888888
Q ss_pred cccCCCCCccchh-------------------------------------------------------------------
Q 003321 724 LYACPHLRTLPAR------------------------------------------------------------------- 736 (830)
Q Consensus 724 l~~~~~l~~lp~~------------------------------------------------------------------- 736 (830)
+++|.....+|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 8887655455443
Q ss_pred ---hcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhh-hHHHHhhhCC
Q 003321 737 ---ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW-AWKDLEKTLP 812 (830)
Q Consensus 737 ---~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~-~~~~l~~~lp 812 (830)
++.+++|++|+|++|.....+|..++++++|+.|+|++|...+.+|..++++++|+.|+++.|... ..+...+.++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 333567888888887766788888888888888888888877788888888888888888776332 1122223445
Q ss_pred Cceeee
Q 003321 813 NLHVQV 818 (830)
Q Consensus 813 ~L~~~~ 818 (830)
.|+...
T Consensus 705 ~L~~L~ 710 (768)
T 3rgz_A 705 MLTEID 710 (768)
T ss_dssp CCSEEE
T ss_pred CCCEEE
Confidence 554443
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=4.9e-18 Score=190.49 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCcc-CCC-ccccCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL-PKS-SIPLKK 642 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l-p~~-~~~l~~ 642 (830)
+++++.|.+..+.. ....|..+.++++|++|++.++........ ...+.++++|++|++++|.+..+ |.. +..+++
T Consensus 78 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 78 LSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp CTTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 44555555544432 223355666677777777766543321111 12266778888888888888866 444 677888
Q ss_pred CceEEeeeccccccccccccCc------------------------------CCCCCccceecccccc------------
Q 003321 643 MQKISFVLCKINNSLDQSVVDL------------------------------PKTLPCLTELTFDHCD------------ 680 (830)
Q Consensus 643 L~~L~l~~~~~~~~~~~~~~~~------------------------------~~~~~~L~~L~l~~~~------------ 680 (830)
|++|++++|.+....+..+... ...+++|+.|++++|.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 8888888887655433222111 0112345555555442
Q ss_pred ---------------------------------------------------ccCccccccCCCCCCCEEEeeCcCCCCcc
Q 003321 681 ---------------------------------------------------DLMKLPPSICGLQSLKNLSVTNCHSLQEL 709 (830)
Q Consensus 681 ---------------------------------------------------~l~~lp~~i~~l~~L~~L~L~~c~~l~~l 709 (830)
.....|..++.+++|++|++++|......
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 22223445566666666666666543334
Q ss_pred chhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc-ccccc
Q 003321 710 PADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK-SVNSL 788 (830)
Q Consensus 710 p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l 788 (830)
|..++.+++|++|++++|......|..++.+++|++|+|++|......|..+..+++|++|++++|. +..+|. .+..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccC
Confidence 4566666666666666655443445556666666666666654333335556666666666666666 344443 34566
Q ss_pred ccCceeecCch
Q 003321 789 KSLRQVICEED 799 (830)
Q Consensus 789 ~~L~~l~~~~~ 799 (830)
++|+.|++++|
T Consensus 395 ~~L~~L~l~~N 405 (455)
T 3v47_A 395 TSLQKIWLHTN 405 (455)
T ss_dssp TTCCEEECCSS
T ss_pred CcccEEEccCC
Confidence 66666665544
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=7e-18 Score=188.69 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=178.9
Q ss_pred CceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC-ccccCCCc
Q 003321 566 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQ 644 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~ 644 (830)
++++.|.+..+.. ....|..|.++++|++|++.++...... ...+.++++|++|+|++|.+..+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcC---hhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 4556666554433 2234677999999999999888654332 24577899999999999999998876 77799999
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 723 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 723 (830)
+|++++|.+...... ....+++|+.|++++|..+..+|. .+.++++|++|++++|. +..+| .+..+++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEE
T ss_pred EEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEE
Confidence 999999887643322 235689999999999888888876 58899999999999986 66676 588999999999
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCC-ccccccccCceeecCch
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 799 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~ 799 (830)
+++|......|..+..+++|++|+|++|......|..+..+++|+.|+|++|. +..+| ..+..+++|+.|++++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 99987776678889999999999999976555556779999999999999998 55555 45778999999987666
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.7e-18 Score=187.69 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=175.3
Q ss_pred CceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCCc
Q 003321 566 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQ 644 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~ 644 (830)
++++.|.+..+.. ....+..|.++++|++|++.++...... ...+.++++|++|+|++|.+..+|. .+..+++|+
T Consensus 64 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIE---IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEEC---GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccC---hhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 3455555544432 2233467899999999999887654322 2357789999999999999999887 478899999
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILR 723 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 723 (830)
+|++++|.+...... ....+++|+.|++++|..+..+|. .+.++++|++|++++|. +..+| .+..+++|+.|+
T Consensus 140 ~L~L~~N~i~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELD 213 (440)
T ss_dssp EEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEE
T ss_pred eeeCCCCcccccCHH----HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEE
Confidence 999999886643322 235689999999999888888876 68899999999999985 67777 588999999999
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCC-ccccccccCceeecCch
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 799 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~ 799 (830)
+++|......|..+..+++|++|+|++|......|..+..+++|+.|+|++|. +..+| ..+..+++|+.|++++|
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCC
Confidence 99986665567889999999999999975544456678999999999999998 45555 45788999999987665
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=188.54 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=139.9
Q ss_pred ccceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccC
Q 003321 543 FNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 621 (830)
Q Consensus 543 ~~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 621 (830)
...+.+.+....+..+.. .-..+++++.|.+..+.. ....|..|.++++|++|++.++...... ...+.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIP---LGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCC---TTSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccC---cccccCCCCCC
Confidence 356677777666655431 123467777777765533 2334677888888888888776543221 12356778888
Q ss_pred eeeecccccCcc-CCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEE
Q 003321 622 SLWLEKVSISQL-PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLS 699 (830)
Q Consensus 622 ~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~ 699 (830)
+|+|++|.+..+ |..+..+++|++|++++|.+....+.. ...+++|+.|++++|. +..+| ..+.++++|+.|+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA----FSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS----STTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhh----ccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEe
Confidence 888888887755 445677788888888777654433222 2345667777776663 33333 3355566666666
Q ss_pred eeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh------------------------hcCCCCCcEeccccccccC
Q 003321 700 VTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR------------------------ICELVCLKYLNISQCVSLS 755 (830)
Q Consensus 700 L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~------------------------~~~l~~L~~L~L~~c~~l~ 755 (830)
+++|......+..+..+++|+.|++++|..+..+|.. +..+++|++|+|++|....
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 6655433322334555555555555555544444443 4455555555555543222
Q ss_pred cchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 756 CLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 756 ~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
..+..+..+++|+.|+|++|......|..+..+++|+.|++++|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 22223455555555555555533334455555556666655554
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=5.2e-18 Score=179.39 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=177.9
Q ss_pred CceEEEEeeCccCcccccCh-hhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCc
Q 003321 566 PKAEVLILNFSSTEEYFLPP-FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 644 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~-~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 644 (830)
++++.|.+..+. ...+|. .+.++++|++|++.++....... ....+..+++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccC-cccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 456666555443 445665 47899999999998876542210 01223467899999999999999999999999999
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCC-ccchhcCCCCCCCEEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ-ELPADIGKMKSLQILR 723 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~ 723 (830)
+|++++|.+...... .....+++|++|++++|......|..+..+++|++|++++|.... .+|..+..+++|++|+
T Consensus 105 ~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 105 HLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp EEECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred EEECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 999998876643321 223568899999999997666677788999999999999987544 4788899999999999
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCcccccc-ccCceeecCch
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSL-KSLRQVICEED 799 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l-~~L~~l~~~~~ 799 (830)
+++|......|..+..+++|++|++++|......+..+..+++|+.|++++|......|..+..+ ++|+.|++++|
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 99987655557889999999999999975443334468899999999999999777778888888 48999988766
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=9.2e-18 Score=188.26 Aligned_cols=272 Identities=15% Similarity=0.076 Sum_probs=185.7
Q ss_pred CccceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCcccc
Q 003321 542 PFNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNL 620 (830)
Q Consensus 542 ~~~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 620 (830)
+...+.+.+....+..... .-..+++++.|.+..+.......|..|.++++|++|++.++...... ...+.++++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE---TGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC---TTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC---hhhccCcccC
Confidence 3457788887776655421 12356788888876665422334567889999999999887654332 2457788999
Q ss_pred CeeeecccccCc-cCCC--ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCC------
Q 003321 621 RSLWLEKVSISQ-LPKS--SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG------ 691 (830)
Q Consensus 621 ~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~------ 691 (830)
++|++++|.+.. +|.. +..+++|++|++++|.+....+..+ ...+++|++|++++|......|..+..
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG---GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc---cCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 999999999885 3444 7889999999999988765444331 245789999999998644433333322
Q ss_pred ----------------------------CCCCCEEEeeCc----------------------------------------
Q 003321 692 ----------------------------LQSLKNLSVTNC---------------------------------------- 703 (830)
Q Consensus 692 ----------------------------l~~L~~L~L~~c---------------------------------------- 703 (830)
+++|++|++++|
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 244555555554
Q ss_pred -----------------------CCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhh
Q 003321 704 -----------------------HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG 760 (830)
Q Consensus 704 -----------------------~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~ 760 (830)
......|..++.+++|+.|++++|......|..++.+++|++|+|++|......|..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 322334556777888888888887665555667888888888888886544444667
Q ss_pred hccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHH-HhhhCCCceeeec
Q 003321 761 IGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVP 819 (830)
Q Consensus 761 l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~-l~~~lp~L~~~~~ 819 (830)
++.+++|+.|++++|......|..+..+++|+.|++++|....... ....+|+|+....
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 8888899999999888555567788888889998888774333221 2246666666544
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.8e-17 Score=171.76 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=117.9
Q ss_pred cccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCcc-CCCccccCCCceEEeeecc-ccccccccccCcCCC
Q 003321 590 MEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVLCK-INNSLDQSVVDLPKT 667 (830)
Q Consensus 590 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 667 (830)
.++|++|++.++....... ..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +....+. ....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTT
T ss_pred CCCceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH----HhcC
Confidence 3566777666654432211 2355666777777777766655 4556666777777777665 3221121 2234
Q ss_pred CCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcE
Q 003321 668 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKY 745 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~ 745 (830)
+++|++|++++|......|..+..+++|++|++++|.. ..+| ..++.+++|++|++++|. +..+|. .+..+++|++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDR 181 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCE
Confidence 56677777777654333355566677777777777653 3333 346667777777777653 334443 3666777777
Q ss_pred eccccccccCcchhhhccCCCCcEEeccCccCCccCC-ccccccccCceeecCch
Q 003321 746 LNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 799 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~ 799 (830)
|++++|......|..+..+++|+.|++++|. +..+| ..+..+++|+.|++++|
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence 7777654444446666677777777777776 33344 34666677777765554
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=3.3e-17 Score=175.23 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=92.4
Q ss_pred cccCeeeecccccCccCCC-ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCC
Q 003321 618 TNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLK 696 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 696 (830)
++|++|++++|.+..++.. +..+++|++|+++.|.+... +........+++|+.|++++|. +..+|..+. ++|+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~ 195 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLT 195 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCS
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc--CcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCC
Confidence 4455555555555544432 44455555555555443210 0011112335566666666653 444554443 5666
Q ss_pred EEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 697 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 697 ~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
+|++++|......|..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|..+..+++|+.|++++|.
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 6666665533333455666666666666665443333345666666666666664 445666666666666666666666
Q ss_pred CCccCCc-ccc------ccccCceeecCchh
Q 003321 777 QIWSLPK-SVN------SLKSLRQVICEEDV 800 (830)
Q Consensus 777 ~l~~lp~-~~~------~l~~L~~l~~~~~~ 800 (830)
+..+|. .+. ....|+.+++.+|.
T Consensus 275 -i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 275 -ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -CCccChhhcCCcccccccccccceEeecCc
Confidence 444432 221 12455566666553
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=3.5e-17 Score=179.37 Aligned_cols=129 Identities=20% Similarity=0.185 Sum_probs=87.5
Q ss_pred cceEEEeeeCCccccccc-ccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 544 NAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
..+++.+....+..+... ...+++++.|.+..+.. ....|..+..+++|++|++.++...... ...+.++++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 121 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV 121 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCC---HHHhcCCCCCCE
Confidence 356666666555544321 12457777777655443 2223347888899999998877543321 234678889999
Q ss_pred eeecccccCccCCCc-cccCCCceEEeeeccccccccccccCcCCCCCccceecccccc
Q 003321 623 LWLEKVSISQLPKSS-IPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCD 680 (830)
Q Consensus 623 L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 680 (830)
|++++|.+..+|..+ ..+++|++|++++|.+....+.. ...+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNR 176 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TSSCTTCCEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh----ccCCCCCCEEECCCCc
Confidence 999999999888774 67899999999988765433322 3457889999998874
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=4.7e-18 Score=191.15 Aligned_cols=217 Identities=12% Similarity=0.024 Sum_probs=173.1
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCc
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 644 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 644 (830)
+++++.|.+..+.. ....|..|.++++|++|++.++...... .+.++++|++|+|++|.+..+|.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCC-CCCCGGGGTTCTTCCEEECTTSCCEEEE-----ECTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CCCccEEEeeCCcC-CCCCHHHHhCCCCCCEEEeeCCCCCCCc-----ccccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 45677777665543 2234568999999999999888654322 277899999999999999887743 8999
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcC-CCCCCCEEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILR 723 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~ 723 (830)
+|++++|.+..... ..+++|+.|++++|......|..++.+++|++|+|++|......|..+. .+++|+.|+
T Consensus 103 ~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 103 TLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 99999988765432 2368899999999975555677889999999999999876666677775 799999999
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhh
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 802 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~ 802 (830)
|++|. +..+|. ...+++|++|+|++| .+..+|+.+..+++|+.|++++|. +..+|..+..+++|+.|++++|...
T Consensus 176 Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 176 LQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 99976 445554 446899999999985 567788889999999999999998 6778989999999999999877443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=5.2e-17 Score=183.19 Aligned_cols=226 Identities=20% Similarity=0.227 Sum_probs=159.3
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC-ccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L 643 (830)
+++++.|.+..+.. ....|..+.++++|++|++.++...... ...+.++++|++|++++|.+..+|.. +..+++|
T Consensus 103 l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 103 LSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYIS---HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEEC---TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred CCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeC---hhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 34555554443332 1223445556666666666554432211 12355666777777777777666543 5566777
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQIL 722 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L 722 (830)
+.|++.+|.+....+. ....+++|+.|++++|..+..+|..+....+|++|++++|. +..+| ..+..+++|+.|
T Consensus 179 ~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 179 IVLRLRHLNINAIRDY----SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp CEEEEESCCCCEECTT----CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEE
T ss_pred cEEeCCCCcCcEeChh----hcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCee
Confidence 7777776665443222 23457888999999888888888877777899999999976 55666 578999999999
Q ss_pred EcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc-cccccccCceeecCchh
Q 003321 723 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDV 800 (830)
Q Consensus 723 ~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~~ 800 (830)
++++|......+..+..+++|++|+|++|......|..+..+++|+.|+|++|. +..+|. .+..+++|+.|++++|.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 999987555445568899999999999976555557789999999999999998 555654 57889999999988774
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.7e-17 Score=190.58 Aligned_cols=224 Identities=17% Similarity=0.196 Sum_probs=121.5
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L 643 (830)
+++++.|.+..+.. ....|..|+++++|++|++.++...... ...++++++|++|+|++|.+..++. .+..+++|
T Consensus 98 l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 98 AHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcC-CCCCHHHHcCCCCCCEEEeeCCCCCCCC---HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 34445544443332 1122333455556666655554432111 1124555666666666666655443 35556666
Q ss_pred ceEEeeeccccccccccccCc---------------------------------CCCCCccceeccccccccCccccccC
Q 003321 644 QKISFVLCKINNSLDQSVVDL---------------------------------PKTLPCLTELTFDHCDDLMKLPPSIC 690 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~---------------------------------~~~~~~L~~L~l~~~~~l~~lp~~i~ 690 (830)
++|++++|.+.......++.+ ....++|+.|++++|. +.. ++.++
T Consensus 174 ~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~-~~~l~ 251 (597)
T 3oja_B 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTD-TAWLL 251 (597)
T ss_dssp CEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCC-CGGGG
T ss_pred cEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCC-Chhhc
Confidence 666666555443211111000 0001223333333332 111 23456
Q ss_pred CCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEE
Q 003321 691 GLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKI 770 (830)
Q Consensus 691 ~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L 770 (830)
.+++|++|+|++|......|..++.+++|+.|+|++|. +..+|..++.+++|++|+|++| .+..+|..++.+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEE
Confidence 66777777777766555556677777777777777743 4556666666777777777774 445677777777777777
Q ss_pred eccCccCCccCCccccccccCceeecCch
Q 003321 771 DMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 771 ~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
+|++|. +..+| +..+++|+.|++++|
T Consensus 330 ~L~~N~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 330 YLDHNS-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp ECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred ECCCCC-CCCcC--hhhcCCCCEEEeeCC
Confidence 777776 44454 556677777777666
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=3.5e-18 Score=199.19 Aligned_cols=200 Identities=18% Similarity=0.153 Sum_probs=98.7
Q ss_pred CccccCeeeecccccC-ccCCCccccCCCceEEeeecc-ccc-cccccccCc--CCCCCccceeccccccccCcccc--c
Q 003321 616 NLTNLRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCK-INN-SLDQSVVDL--PKTLPCLTELTFDHCDDLMKLPP--S 688 (830)
Q Consensus 616 ~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~--~ 688 (830)
++++|++|++++|.+. .+|..+..+++|++|++++|. +.. .++..+..+ ...+++|++|++++|. +..+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh
Confidence 4555555555555433 445555555555555555544 332 222222110 0112455555555553 235555 5
Q ss_pred cCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCC-CcEeccccccccCcchhhhccCC--
Q 003321 689 ICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVC-LKYLNISQCVSLSCLPQGIGNLI-- 765 (830)
Q Consensus 689 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~-L~~L~L~~c~~l~~lp~~l~~l~-- 765 (830)
++++++|++|++++|.....+| .++.+++|+.|++++|. +..+|..++.+++ |++|++++|. +..+|..+..++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccC
Confidence 5555555555555554332555 55555555555555543 2255555555665 6666666543 335555554433
Q ss_pred CCcEEeccCccCCccCCcccc-------ccccCceeecCchhhhhHH-HHhhhCCCceeeec
Q 003321 766 RLEKIDMRECSQIWSLPKSVN-------SLKSLRQVICEEDVSWAWK-DLEKTLPNLHVQVP 819 (830)
Q Consensus 766 ~L~~L~l~~~~~l~~lp~~~~-------~l~~L~~l~~~~~~~~~~~-~l~~~lp~L~~~~~ 819 (830)
+|+.|++++|......|..+. .+++|+.|++++|...... .+...+|+|+....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 566666666665555555555 5556666666655322211 12223555555433
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=5.3e-17 Score=188.11 Aligned_cols=257 Identities=18% Similarity=0.147 Sum_probs=153.5
Q ss_pred ceEEEeeeCCccccccc-ccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCee
Q 003321 545 AQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 623 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 623 (830)
.+++.+....+..+... ...+++++.|.+..+.. ....|..|..+++|++|++.++...... ...++++++|++|
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L 128 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTVL 128 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEE
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCC---HHHHcCCCCCCEE
Confidence 34555544433333211 12356666666654432 2223346778888888888766543321 2335677888888
Q ss_pred eecccccCccCCCc-cccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCC--------
Q 003321 624 WLEKVSISQLPKSS-IPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS-------- 694 (830)
Q Consensus 624 ~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~-------- 694 (830)
+|++|.+..+|..+ ..+++|++|++++|.+....+.. ...+++|++|++++|. +..+| ++.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh----hhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhccc
Confidence 88888888877764 67888888888877665433322 3457788888888774 33332 122222
Q ss_pred --------------------------------CCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCC
Q 003321 695 --------------------------------LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVC 742 (830)
Q Consensus 695 --------------------------------L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 742 (830)
|+.|+|++|. +.. +..++.+++|+.|++++|......|..++.+++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 3333333332 111 234566777777777776655555667777777
Q ss_pred CcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeee
Q 003321 743 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQV 818 (830)
Q Consensus 743 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~ 818 (830)
|++|+|++| .+..+|..+..+++|+.|+|++|. +..+|..+..+++|+.|++++|...... ...+|+|+...
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~ 351 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT 351 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEE
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEE
Confidence 777777774 455666666677777777777776 5577777777777777777766432211 23455555543
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=179.95 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=125.4
Q ss_pred hhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC-ccccCCCceEEeeeccccccccccccCc
Q 003321 586 FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDL 664 (830)
Q Consensus 586 ~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 664 (830)
.+.++++|++|++.++...... ...+.++++|++|++++|.+..+|.. +..+++|++|++++|.+...... ..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~ 144 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET---SL 144 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS---CS
T ss_pred HhccCCCCCEEECCCCccCccC---HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch---hh
Confidence 4666666666666555433211 12345566666666666666666654 55566666666666554421110 12
Q ss_pred CCCCCccceeccccccccCcc-ccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh-hcCCCC
Q 003321 665 PKTLPCLTELTFDHCDDLMKL-PPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVC 742 (830)
Q Consensus 665 ~~~~~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~ 742 (830)
...+++|++|++++|..+..+ |..++.+++|++|++++|......|..++.+++|++|++++|. +..+|.. +..+++
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSS 223 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTT
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhccc
Confidence 234566666666666444444 3455666666666666665444445566666666666666654 3444433 234566
Q ss_pred CcEeccccccccC-------------------------------cchhhhccCCCCcEEeccCccCCccCCccc-ccccc
Q 003321 743 LKYLNISQCVSLS-------------------------------CLPQGIGNLIRLEKIDMRECSQIWSLPKSV-NSLKS 790 (830)
Q Consensus 743 L~~L~L~~c~~l~-------------------------------~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~ 790 (830)
|++|++++|.... .+|..+..+++|+.|++++|. +..+|..+ .++++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTS 302 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCC
Confidence 6666666543211 366778899999999999998 67888875 88999
Q ss_pred CceeecCch
Q 003321 791 LRQVICEED 799 (830)
Q Consensus 791 L~~l~~~~~ 799 (830)
|+.|++++|
T Consensus 303 L~~L~L~~N 311 (353)
T 2z80_A 303 LQKIWLHTN 311 (353)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeeCC
Confidence 999998877
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=6.1e-17 Score=188.59 Aligned_cols=208 Identities=18% Similarity=0.182 Sum_probs=123.2
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCcc-CCCccccCCCceEEeeeccccccccccccCcC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVLCKINNSLDQSVVDLP 665 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 665 (830)
+.++++|++|++.++....... ....+.++++|++|++++|.+..+ |..+..+++|++|++++|.+....+.. ..
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~ 421 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDC-CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS---PF 421 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEE-STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC---TT
T ss_pred hhccCcCCEEECCCCccccccC-cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch---hh
Confidence 4445555555554443222110 012244555555666655555533 334555556666666555543322211 12
Q ss_pred CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCc-c--chhcCCCCCCCEEEcccCCCCCccchhhcCCCC
Q 003321 666 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE-L--PADIGKMKSLQILRLYACPHLRTLPARICELVC 742 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~-l--p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 742 (830)
..+++|+.|++++|......|..++.+++|++|++++|..... + +..++.+++|++|++++|......|..++.+++
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 3466777777777655455566677777777777777654331 1 245667777777777776655555667777777
Q ss_pred CcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 743 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 743 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|++|+|++|......|..+.++++| .|++++|......|..+..+++|+.+++++|
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 8888887765555566677777777 7888887755555556777777887776555
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=5.1e-17 Score=173.83 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=145.1
Q ss_pred cceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 544 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
..+.+.+....+..... .-..+++++.|.+..+.. ....|..+.++++|++|++.++...... ..+ .++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~----~~~--~~~L~~ 127 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIP----PNL--PSSLVE 127 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCC----SSC--CTTCCE
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccC----ccc--cccCCE
Confidence 34555555544443321 112345566665544432 2223555666777777776655433111 111 156777
Q ss_pred eeecccccCccCCC-ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEee
Q 003321 623 LWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVT 701 (830)
Q Consensus 623 L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~ 701 (830)
|++++|.+..+|.. +..+++|++|++++|.+... +..+.....+ +|+.|++++|. +..+|..+. ++|++|+++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS--GFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLD 201 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG--GSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccC--CCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECC
Confidence 77777777666654 55677777777776655321 0011111223 67777777763 555665543 678888888
Q ss_pred CcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccC
Q 003321 702 NCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 781 (830)
Q Consensus 702 ~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l 781 (830)
+|......|..+..+++|+.|++++|......|..++.+++|++|++++| .+..+|..+..+++|+.|++++|. +..+
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~ 279 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKV 279 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCcc
Confidence 87644444467778888888888886655544556778888888888875 556788778888888888888887 4554
Q ss_pred Cc-cccc------cccCceeecCchhh
Q 003321 782 PK-SVNS------LKSLRQVICEEDVS 801 (830)
Q Consensus 782 p~-~~~~------l~~L~~l~~~~~~~ 801 (830)
|. .+.. ...|+.+++.+|..
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHccccccccccccccceEeecCcc
Confidence 43 3332 35677777777643
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=1.2e-16 Score=186.12 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=123.3
Q ss_pred CCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccc-cCCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPS-ICGL 692 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-i~~l 692 (830)
+.++++|++|++++|.+..+|..+..+++|++|++++|.+....+..+ ..+++|++|++++|.....+|.. ++.+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG----GGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh----hccCcCCEEECCCCCcccccchhhhhcc
Confidence 677889999999999999999999999999999999887665433222 34677777887777655555543 6677
Q ss_pred CCCCEEEeeCcCCCCcc--chhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh-hhccCCCCcE
Q 003321 693 QSLKNLSVTNCHSLQEL--PADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEK 769 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~ 769 (830)
++|++|++++|...... |..++.+++|++|++++|......|..++.+++|++|++++|......|. .+..+++|+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 77777777776543322 45667777777777777655555556666677777777766544333332 2566666666
Q ss_pred EeccCccCCccCCccccccccCceeecCch
Q 003321 770 IDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 770 L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|++++|......|..+..+++|+.|++++|
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 666666644445555666666666666655
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=8.7e-17 Score=176.25 Aligned_cols=245 Identities=16% Similarity=0.188 Sum_probs=169.5
Q ss_pred ceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCee
Q 003321 545 AQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 623 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 623 (830)
.+.+.+....+..... .-..+++++.|.+..+.. ....|..+.++++|++|++.++...... ...+.++++|++|
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~~L~~L 146 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTPKLTTL 146 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEE
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCCEEECCCCccCcCC---HHHhcCCCCCcEE
Confidence 5666666655544432 123467888888766553 2334566899999999999887654221 1236789999999
Q ss_pred eecccccCccCC-CccccCCCceEEeeeccccccccccccCc---------------------------------CCCCC
Q 003321 624 WLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDL---------------------------------PKTLP 669 (830)
Q Consensus 624 ~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------------~~~~~ 669 (830)
++++|.+..++. .+..+++|++|++++|.+.......+..+ ...++
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 999999997755 58889999999999988764321111110 00123
Q ss_pred ccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccc
Q 003321 670 CLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNIS 749 (830)
Q Consensus 670 ~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 749 (830)
+|+.|++++|. +... +.++.+++|++|++++|......|..+..+++|+.|++++| .+..+|..+..+++|++|+++
T Consensus 227 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred cccEEECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence 45555555553 2333 35677888888888887655555777888888888888885 456677777778888888888
Q ss_pred cccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 750 QCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 750 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
+| .+..+|..+..+++|+.|++++|. +..+| +..+++|+.|++++|.
T Consensus 304 ~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 304 HN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CC-cceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 86 566788778888888888888887 56665 6677888888887763
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=7.2e-17 Score=180.48 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=178.8
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC-CCccccCCCceEEeeecccccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLD 658 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~ 658 (830)
...+|..+. ++|++|++.++...... ...+.++++|++|+|++|.+..++ ..+..+++|++|++++|.+....+
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred cCccCCCCC--CCccEEECcCCcCceEC---HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 345565433 68999999887654432 245788999999999999999776 568889999999999988764333
Q ss_pred ccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccchh
Q 003321 659 QSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPAR 736 (830)
Q Consensus 659 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~ 736 (830)
. ....+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++|+.|++++|. +..+| .
T Consensus 141 ~----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~ 213 (452)
T 3zyi_A 141 G----AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-N 213 (452)
T ss_dssp T----TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-C
T ss_pred h----hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-c
Confidence 2 23568999999999985 556654 788999999999999988888875 58899999999999975 55666 4
Q ss_pred hcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHH-HHhhhCCCce
Q 003321 737 ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKTLPNLH 815 (830)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~-~l~~~lp~L~ 815 (830)
+..+++|++|+|++|......|..+.++++|+.|++++|......|..+..+++|+.|++++|...... .....+|+|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 889999999999997665555788999999999999999966667788999999999999987433221 1224566666
Q ss_pred eeec
Q 003321 816 VQVP 819 (830)
Q Consensus 816 ~~~~ 819 (830)
....
T Consensus 294 ~L~L 297 (452)
T 3zyi_A 294 ELHL 297 (452)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5533
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=181.74 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred cceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 544 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
..+.+.+....+..... .-..+++++.|.+..+.. ....|..|.++++|++|++.++..... +.. .+++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~-~l~~L~~ 94 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKI-----SCH-PTVNLKH 94 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEE-----ECC-CCCCCSE
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecCCCceeec-----Ccc-ccCCccE
Confidence 45667776665554421 113466777777665543 223466788888888888877754421 111 5677777
Q ss_pred eeecccccCc--cCCCccccCCCceEEeeeccc
Q 003321 623 LWLEKVSISQ--LPKSSIPLKKMQKISFVLCKI 653 (830)
Q Consensus 623 L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~ 653 (830)
|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCccc
Confidence 7777777764 456677777777777776654
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=181.44 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=79.5
Q ss_pred CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCC--ccchhcCCCCCCCEEEcccCCCCCccchh-hcCCCC
Q 003321 666 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVC 742 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~ 742 (830)
..+++|++|++++|.....+|..++.+++|++|++++|.... .+|..++.+++|++|++++|.....+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 457788888888886656677888888888888888876443 45667888888888888887655546654 555666
Q ss_pred CcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 743 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 743 L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|++|++++|.....+|..+. ++|+.|++++|. +..+|..+..+++|+.|++++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC
Confidence 66666665543333332221 344444444443 3344444444444444444433
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=2.1e-16 Score=170.21 Aligned_cols=215 Identities=18% Similarity=0.250 Sum_probs=136.2
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
+.++++|++|++.++.... +..+.++++|++|++++|.....+..+..+++|++|++++|.+..... ..
T Consensus 106 ~~~l~~L~~L~l~~n~i~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~ 174 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IA 174 (347)
T ss_dssp GTTCTTCSEEECTTSCCCC-----CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GG
T ss_pred HcCCCcCCEEECcCCcccC-----chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hc
Confidence 5555555555554443221 122445555555555555433333335555556666655554432211 23
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|+.|++++|. +..++. +..+++|++|++++|. +..++. +..+++|+.|++++|. +..+|. +..+++|++|
T Consensus 175 ~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWL 248 (347)
T ss_dssp GCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred cCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEE
Confidence 46677777777763 445554 6677777777777765 344443 7778888999988865 445555 7888999999
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhh-HHHHhhhCCCceeeecccc
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWA-WKDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~-~~~l~~~lp~L~~~~~~~~ 822 (830)
++++| .+..++ .+..+++|+.|++++|. +..+| .+..+++|+.|++++|.... .....+.+|+|+.....+|
T Consensus 249 ~l~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 249 EIGTN-QISDIN-AVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred ECCCC-ccCCCh-hHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 99886 455554 58889999999999997 66665 57888999999988774432 2233457888888766655
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=4.3e-18 Score=180.76 Aligned_cols=216 Identities=13% Similarity=0.018 Sum_probs=152.3
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCc
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 644 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 644 (830)
+++++.|.+..+.. ....|..+.++++|++|++.++...... .+..+++|++|++++|.+..+|. .++|+
T Consensus 33 ~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCC-CCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCCCEEECcCCcc-CcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCCEEECcCCccccccC----CCCcC
Confidence 45566666555432 2233467888999999998877654322 26778889999999988887663 37888
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhc-CCCCCCCEEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADI-GKMKSLQILR 723 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~ 723 (830)
+|++++|.+..... ..+++|+.|++++|......|..++.+++|++|++++|......|..+ ..+++|++|+
T Consensus 103 ~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 103 TLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp EEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 88888877654322 236778888888875444345567788888888888876444444555 3678888888
Q ss_pred cccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhh
Q 003321 724 LYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 801 (830)
Q Consensus 724 l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~ 801 (830)
+++|. +..+|. ...+++|++|++++| .+..+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|..
T Consensus 176 L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 176 LQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred CCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence 88865 445543 335788888888875 566777778888888888888887 667888888888888888776643
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=3.1e-17 Score=191.06 Aligned_cols=245 Identities=17% Similarity=0.103 Sum_probs=176.0
Q ss_pred ceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeee
Q 003321 545 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 624 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 624 (830)
.+.+.+....+..+..+ .+++++.|.+..+... . +..+..+++|++|++.++...... .....+..+++|++|+
T Consensus 309 L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~-~--~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGS-I--SFKKVALPSLSYLDLSRNALSFSG-CCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSC-E--ECCCCCCTTCCEEECCSSCEEEEE-ECCHHHHCCSCCCEEE
T ss_pred CCEEEcccccCcccccC--CCCccceeeccCCcCc-c--chhhccCCCCCEEECcCCccCCCc-chhhhhccCCcccEeE
Confidence 44455554444444322 5566666666554221 1 113556677777777665432211 0112345677888888
Q ss_pred ecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcC
Q 003321 625 LEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCH 704 (830)
Q Consensus 625 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~ 704 (830)
+++|.+..+|..+..+++|++|++++|.+....+. .....+++|+.|++++|......|..++.+++|++|++++|.
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 88888888887888888888888888776654331 123457889999999987666778888999999999999987
Q ss_pred CCC-ccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc
Q 003321 705 SLQ-ELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 705 ~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
... .+|..++.+++|+.|++++|......|..++.+++|++|++++|......|..+.++++|+.|++++|. +..+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 554 367888899999999999987666667788899999999999976655568889999999999999998 678888
Q ss_pred cccccc-cCceeecCch
Q 003321 784 SVNSLK-SLRQVICEED 799 (830)
Q Consensus 784 ~~~~l~-~L~~l~~~~~ 799 (830)
.+..++ +|+.+++++|
T Consensus 539 ~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CGGGSCTTCCEEECCSC
T ss_pred hHhhhcccCcEEEccCC
Confidence 888886 5999887665
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=2.9e-17 Score=191.38 Aligned_cols=259 Identities=16% Similarity=0.135 Sum_probs=185.0
Q ss_pred ceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeee
Q 003321 545 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 624 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 624 (830)
.+.+.+....+..+.. -..+++++.|.+..+.. ..+|. + .+++|++|++.++..... ..+..+++|++|+
T Consensus 287 L~~L~l~~~~~~~l~~-l~~~~~L~~L~l~~n~l--~~lp~-~-~l~~L~~L~l~~n~~~~~-----~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQL--KQFPT-L-DLPFLKSLTLTMNKGSIS-----FKKVALPSLSYLD 356 (606)
T ss_dssp CSEEEEESCCCCCCCC-CCTTCCCSEEEEESCCC--SSCCC-C-CCSSCCEEEEESCSSCEE-----CCCCCCTTCCEEE
T ss_pred CCEEEecCccchhhhh-ccccccCCEEEcccccC--ccccc-C-CCCccceeeccCCcCccc-----hhhccCCCCCEEE
Confidence 4556666555555442 23456777777766654 56663 4 888899998877642221 1356788889999
Q ss_pred ecccccCcc---CCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEEe
Q 003321 625 LEKVSISQL---PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSV 700 (830)
Q Consensus 625 L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L 700 (830)
+++|.+..+ |..+..+++|++|++++|.+... + .....+++|+.|++++|......| ..++.+++|++|++
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-S----ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-C----CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccc-h----hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 998888765 66777888899999888775432 1 233457888899998886555555 57888889999999
Q ss_pred eCcCCCCccchhcCCCCCCCEEEcccCCCCC-ccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCc
Q 003321 701 TNCHSLQELPADIGKMKSLQILRLYACPHLR-TLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW 779 (830)
Q Consensus 701 ~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~ 779 (830)
++|......|..++.+++|++|++++|.... .+|..++.+++|++|++++|......|..++.+++|+.|++++|....
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 8887666677788888899999998876655 367778888899999998876555556778888899999999888655
Q ss_pred cCCccccccccCceeecCchhhhhHHHHhhhCC-Cceeee
Q 003321 780 SLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLP-NLHVQV 818 (830)
Q Consensus 780 ~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp-~L~~~~ 818 (830)
..|..+.++++|+.|++++|.....+.-...+| +|+...
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE
T ss_pred cCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE
Confidence 668888888889998888775443332233555 355543
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=6.2e-17 Score=191.99 Aligned_cols=133 Identities=16% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCCceEEEEeeCccCcccccChhhhhcccCceEEEcccc-CCc-cccCC---CC-CCCCccccCeeeecccccCccCC--
Q 003321 564 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYS-TSN-AALGN---FS-VCSNLTNLRSLWLEKVSISQLPK-- 635 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~-~~~-~~~~~---~~-~l~~l~~L~~L~L~~~~i~~lp~-- 635 (830)
.+++++.|.+..+.. ...+|..++++++|++|++.++. ... ..+.. +. .+..+++|++|+|++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 567778887766643 45677788888888888887775 332 11111 11 23344566666666666666666
Q ss_pred CccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCC-CCEEEeeCcC
Q 003321 636 SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS-LKNLSVTNCH 704 (830)
Q Consensus 636 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~-L~~L~L~~c~ 704 (830)
.+..+++|++|++++|.+. .++ ....+++|+.|++++|. +..+|..++.+++ |++|+|++|.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred hhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence 6666666666666666544 222 11234455555555543 2244444444444 5555554443
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=7.4e-17 Score=179.69 Aligned_cols=227 Identities=19% Similarity=0.199 Sum_probs=178.0
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC-CCccccCCCceEEeeecccccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLD 658 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~ 658 (830)
...+|..+. ++++.|++.++....... ..+.++++|++|+|++|.+..++ ..+..+++|++|++++|.+.....
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 445665443 689999998876544332 45788999999999999999877 467889999999999988764333
Q ss_pred ccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccchh
Q 003321 659 QSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPAR 736 (830)
Q Consensus 659 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~ 736 (830)
. ....+++|++|++++|. +..+| ..+..+++|++|++++|..+..++. .+.++++|++|++++| .+..+|.
T Consensus 130 ~----~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~- 202 (440)
T 3zyj_A 130 G----AFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN- 202 (440)
T ss_dssp T----TSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-
T ss_pred h----HhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-
Confidence 2 23568999999999985 55555 4788999999999999888888875 6889999999999997 4667774
Q ss_pred hcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHH-HHhhhCCCce
Q 003321 737 ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKTLPNLH 815 (830)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~-~l~~~lp~L~ 815 (830)
+..+++|++|+|++|......|..+..+++|+.|++++|......|..+.++++|+.|++++|...... .....+|+|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 889999999999997554445778999999999999999966666778999999999999987433321 1234566666
Q ss_pred eee
Q 003321 816 VQV 818 (830)
Q Consensus 816 ~~~ 818 (830)
...
T Consensus 283 ~L~ 285 (440)
T 3zyj_A 283 RIH 285 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=6.9e-17 Score=191.55 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=55.7
Q ss_pred CceEEEEeeCccCcccccCh--hhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCC-
Q 003321 566 PKAEVLILNFSSTEEYFLPP--FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKK- 642 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~--~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~- 642 (830)
|+++.|.+..+.. ..+|. .++++++|++|++.++... .++.+.++++|+.|+|++|.+..+|..+..+++
T Consensus 548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~-----~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~ 620 (876)
T 4ecn_A 548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVR-----HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620 (876)
T ss_dssp TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCC-----BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTT
T ss_pred CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcc-----cchhhcCCCcceEEECcCCccccchHHHhhcccc
Confidence 4566665554443 36676 7778888888887776543 122566777777777777777777777777777
Q ss_pred CceEEeeecccc
Q 003321 643 MQKISFVLCKIN 654 (830)
Q Consensus 643 L~~L~l~~~~~~ 654 (830)
|++|++++|.+.
T Consensus 621 L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 621 VEGLGFSHNKLK 632 (876)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECcCCCCC
Confidence 777777777654
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=2.2e-17 Score=192.47 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=125.2
Q ss_pred CCCccccCeeeecccccC-ccCCCccccCCCceEEeeeccccccccccccCcCCCCCc-cceeccccccccCccccccCC
Q 003321 614 CSNLTNLRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC-LTELTFDHCDDLMKLPPSICG 691 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~lp~~i~~ 691 (830)
++++++|++|++++|.+. .+| .+..+++|++|++++|.+. .++ .....+++ |++|++++|. +..+|..++.
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp----~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~ 398 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP----ANFCGFTEQVENLSFAHNK-LKYIPNIFDA 398 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC----TTSEEECTTCCEEECCSSC-CSSCCSCCCT
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc----HhhhhhcccCcEEEccCCc-Ccccchhhhh
Confidence 445555555555555555 555 5555555555555555443 111 22234556 7777777764 4467766665
Q ss_pred CC--CCCEEEeeCcCCCCccchhcC-------CCCCCCEEEcccCCCCCccchhh-cCCCCCcEeccccccccCcchhhh
Q 003321 692 LQ--SLKNLSVTNCHSLQELPADIG-------KMKSLQILRLYACPHLRTLPARI-CELVCLKYLNISQCVSLSCLPQGI 761 (830)
Q Consensus 692 l~--~L~~L~L~~c~~l~~lp~~i~-------~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~L~~c~~l~~lp~~l 761 (830)
+. +|++|++++|......|..++ .+++|+.|++++|.. ..+|..+ ..+++|++|+|++|. +..+|..+
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~ 476 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNM-LTEIPKNS 476 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSC-CSBCCSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCC-CCCcCHHH
Confidence 44 777777777766666666666 667788888877653 3566553 457888888888754 44676543
Q ss_pred cc--------CCCCcEEeccCccCCccCCcccc--ccccCceeecCchhhhhHHHHhhhCCCceeeecc
Q 003321 762 GN--------LIRLEKIDMRECSQIWSLPKSVN--SLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPA 820 (830)
Q Consensus 762 ~~--------l~~L~~L~l~~~~~l~~lp~~~~--~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~ 820 (830)
.. +++|+.|++++|. +..+|..+. .+++|+.|++++|.....+.-...+|+|+.....
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECC
T ss_pred hccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECC
Confidence 32 2388888888887 558888876 8888999988877544433333467777777654
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=3e-16 Score=169.06 Aligned_cols=255 Identities=16% Similarity=0.202 Sum_probs=182.2
Q ss_pred cceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCee
Q 003321 544 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 623 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 623 (830)
..+.+.+....+..+.. -..+++++.|.+..+. ...+|. +..+++|++|++.++... ..+..+..+++|++|
T Consensus 89 ~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~----~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 89 KLTNLYIGTNKITDISA-LQNLTNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNL----SDLSPLSNMTGLNYL 160 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTC----CCCGGGTTCTTCCEE
T ss_pred cCCEEEccCCcccCchH-HcCCCcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCc----ccccchhhCCCCcEE
Confidence 45666666655555432 2356777877776544 344555 889999999999877432 234457888999999
Q ss_pred eecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCc
Q 003321 624 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 703 (830)
Q Consensus 624 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c 703 (830)
++++|.+..++. +..+++|++|++++|.+..... ...+++|+.|++++|. +..++. +..+++|++|++++|
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN 231 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCccccccc------ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCC
Confidence 999999888776 7788999999999887654222 2457888888888874 444544 778888888988887
Q ss_pred CCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc
Q 003321 704 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 704 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
. +..++. +..+++|+.|++++|. +..++ .+..+++|++|++++| .+..+| .+..+++|+.|++++|......|.
T Consensus 232 ~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 K-ITDLSP-LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp C-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred c-cCCCcc-hhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh
Confidence 6 455554 7888888888888864 44453 5778888888888886 455564 478888888888888886556667
Q ss_pred cccccccCceeecCchhhhhHHHHhhhCCCceeeecccc
Q 003321 784 SVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 784 ~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 822 (830)
.+..+++|+.|++++|....... ...+|+|+.....+|
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred HhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 78888888888888775444333 346777766655443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2e-16 Score=169.04 Aligned_cols=220 Identities=17% Similarity=0.193 Sum_probs=175.6
Q ss_pred CceEEEEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCc
Q 003321 566 PKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 644 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 644 (830)
+.++.|.+..+. ...+| ..+.++++|++|++.++...... ...+.++++|++|++++|.+..+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeC---HHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 567776665543 44454 47899999999999887654322 2457889999999999999999998776 7999
Q ss_pred eEEeeeccccccccccccCcCCCCCccceecccccccc--CccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEE
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL--MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 722 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 722 (830)
+|++++|.+....... ...+++|+.|++++|... ...|..+..+++|++|++++|. +..+|..+. ++|+.|
T Consensus 125 ~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 125 ELRVHENEITKVRKSV----FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTEL 197 (330)
T ss_dssp EEECCSSCCCBBCHHH----HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEE
T ss_pred EEECCCCcccccCHhH----hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEE
Confidence 9999998776543322 245889999999998643 2556788999999999999976 667886654 899999
Q ss_pred EcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 723 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 723 ~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 999987655557889999999999999975444444578999999999999998 77999999999999999998773
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=6.2e-17 Score=171.10 Aligned_cols=211 Identities=19% Similarity=0.226 Sum_probs=166.3
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCcc---CCCccccCCCceEEeeecccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL---PKSSIPLKKMQKISFVLCKINNS 656 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~ 656 (830)
...+|..+ .++|++|++.++...... ...+.++++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 19 l~~ip~~~--~~~l~~L~L~~n~l~~i~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~- 92 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 92 (306)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCCCC---TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-
T ss_pred cccCCCCC--CCCCCEEECCCCccCccC---HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-
Confidence 44556533 368999999887654221 12367899999999999998865 5667789999999999987653
Q ss_pred ccccccCcCCCCCccceeccccccccCccc--cccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCC-cc
Q 003321 657 LDQSVVDLPKTLPCLTELTFDHCDDLMKLP--PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLR-TL 733 (830)
Q Consensus 657 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~-~l 733 (830)
++.. ...+++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|.... .+
T Consensus 93 l~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 93 MSSN----FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp EEEE----EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred Chhh----cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 2222 2458999999999985 45554 478999999999999988666667788999999999999987554 47
Q ss_pred chhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhh
Q 003321 734 PARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVS 801 (830)
Q Consensus 734 p~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~ 801 (830)
|..+..+++|++|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 88899999999999999755444477899999999999999984444445788899999999988743
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=6e-17 Score=174.91 Aligned_cols=234 Identities=18% Similarity=0.114 Sum_probs=174.3
Q ss_pred CccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC-CCccccCCCceEEeeeccc
Q 003321 575 FSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKI 653 (830)
Q Consensus 575 ~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~ 653 (830)
.+.+....+|..+. ++|++|++.++....... ..+.++++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 38 ~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 38 GSSGSLNSIPSGLT--EAVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp CCSTTCSSCCTTCC--TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCccccccccc--ccCcEEECCCCcCcccCH---HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 33444556676544 589999998876543221 24788999999999999999875 5688999999999999987
Q ss_pred cccccccccCcCCCCCccceeccccccccCcccc--ccCCCCCCCEEEeeCcCCCCcc-chhcCCCCCCCEEEcccCCCC
Q 003321 654 NNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP--SICGLQSLKNLSVTNCHSLQEL-PADIGKMKSLQILRLYACPHL 730 (830)
Q Consensus 654 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l 730 (830)
....... ...+++|++|++++| .+..+|. .+..+++|++|++++|..+..+ +..++.+++|+.|++++|...
T Consensus 113 ~~~~~~~----~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 113 SNLSSSW----FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCHHH----HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CcCCHhH----hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 6433221 245889999999998 4667776 7889999999999999766666 467899999999999998876
Q ss_pred CccchhhcCCCCCcEeccccccccCcchhh-hccCCCCcEEeccCccCCcc-----------------------------
Q 003321 731 RTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWS----------------------------- 780 (830)
Q Consensus 731 ~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~----------------------------- 780 (830)
...|..++.+++|++|++++|. +..+|.. +..+++|+.|++++|.....
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred ccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 6678899999999999999965 5777765 45689999999999984332
Q ss_pred --CCccccccccCceeecCchhhhhHHH-HhhhCCCceeeec
Q 003321 781 --LPKSVNSLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVP 819 (830)
Q Consensus 781 --lp~~~~~l~~L~~l~~~~~~~~~~~~-l~~~lp~L~~~~~ 819 (830)
+|..+..+++|+.|++++|....... +-+.+|+|+....
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 23345567777777777663332221 1235566655433
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=4.1e-16 Score=162.91 Aligned_cols=201 Identities=18% Similarity=0.224 Sum_probs=158.1
Q ss_pred CceEEEEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccc-cCcc-CCCccccCC
Q 003321 566 PKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQL-PKSSIPLKK 642 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-i~~l-p~~~~~l~~ 642 (830)
++++.|.+..+. ...+| ..+.++++|++|++.++...... ...+.++++|++|++++|. +..+ |..+..+++
T Consensus 32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeC---HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 455666554443 33344 56899999999999887654322 2357789999999999997 8877 667888999
Q ss_pred CceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccch-hcCCCCCCC
Q 003321 643 MQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQ 720 (830)
Q Consensus 643 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~ 720 (830)
|++|++++|.+....+. ....+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|+
T Consensus 107 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLD 180 (285)
T ss_dssp CCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccC
Confidence 99999999887654332 23568999999999985 45555 458899999999999986 566664 588999999
Q ss_pred EEEcccCCCCCccchhhcCCCCCcEeccccccccCcch-hhhccCCCCcEEeccCccCC
Q 003321 721 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQI 778 (830)
Q Consensus 721 ~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l 778 (830)
.|++++|......|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|+..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 99999987666668889999999999999974 45555 55899999999999999844
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=6.3e-16 Score=165.31 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=175.2
Q ss_pred CCceEEEEeeCccCccccc-ChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCC
Q 003321 565 FPKAEVLILNFSSTEEYFL-PPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKM 643 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~l-p~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 643 (830)
.++++.|.+..+. ...+ |..+.++++|++|++.++...... ...+.++++|++|++++|.+..+|..+. ++|
T Consensus 53 ~~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 3567777665544 3344 557999999999999887654322 2457889999999999999999998876 899
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceecccccccc--CccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL--MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQI 721 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 721 (830)
++|++++|.+....... ...+++|+.|++++|... ...|..+..+ +|++|++++|. +..+|..+. ++|+.
T Consensus 126 ~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~ 197 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGV----FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNE 197 (332)
T ss_dssp CEEECCSSCCCCCCSGG----GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSC
T ss_pred CEEECCCCccCccCHhH----hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCE
Confidence 99999998876433322 356899999999998642 2556777777 99999999976 667887664 79999
Q ss_pred EEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 722 LRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 722 L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
|++++|......|..+..+++|++|++++|......|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 9999987666666789999999999999975444444579999999999999998 77999999999999999998773
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=3.9e-17 Score=172.92 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=130.2
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCcccc-----CCCceEEeeeccccccccccccC
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPL-----KKMQKISFVLCKINNSLDQSVVD 663 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 663 (830)
++++|++|++.++.........+ .+..+++|++|++++|.+..+|..+..+ ++|++|++++|.+....+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~--- 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ--- 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT---
T ss_pred CcCCccEEEccCCcccchhHHHH-HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH---
Confidence 67788888887765432221111 1267778888888888877777666666 77888888877765433332
Q ss_pred cCCCCCccceeccccccccCc--ccccc--CCCCCCCEEEeeCcCCCCc---cc-hhcCCCCCCCEEEcccCCCCCccc-
Q 003321 664 LPKTLPCLTELTFDHCDDLMK--LPPSI--CGLQSLKNLSVTNCHSLQE---LP-ADIGKMKSLQILRLYACPHLRTLP- 734 (830)
Q Consensus 664 ~~~~~~~L~~L~l~~~~~l~~--lp~~i--~~l~~L~~L~L~~c~~l~~---lp-~~i~~l~~L~~L~l~~~~~l~~lp- 734 (830)
...+++|++|++++|...+. +|..+ +.+++|++|++++|. +.. ++ ..+..+++|+.|++++|......|
T Consensus 169 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 169 -VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp -CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred -hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 24567788888887754333 33444 677788888887765 342 22 223466788888887765544443
Q ss_pred hhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 735 ARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 735 ~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
..+..+++|++|++++| .++.+|..+. ++|+.|++++|. +..+|. +..+++|+.|++++|
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCC
Confidence 34555777888888775 4457776665 778888888776 566665 777777877777766
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=6e-16 Score=178.21 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=80.7
Q ss_pred CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCC--ccchhcCCCCCCCEEEcccCCCCCccchh-hcCCC-
Q 003321 666 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRTLPAR-ICELV- 741 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~- 741 (830)
..+++|++|++++|.....+|..++.+++|++|++++|.... .+|..++.+++|+.|++++|.....+|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456777778887776555567777777888888887765322 33456777777777777776654435432 34444
Q ss_pred ---------------------CCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCcc-ccccccCceeecCch
Q 003321 742 ---------------------CLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS-VNSLKSLRQVICEED 799 (830)
Q Consensus 742 ---------------------~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~l~~~~~ 799 (830)
+|++|++++| .++.+|..+..+++|+.|++++|. +..+|.. +..+++|+.+++++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCC
Confidence 4455555443 344555555566666666666665 4455554 556666666655544
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=4.2e-16 Score=164.42 Aligned_cols=195 Identities=16% Similarity=0.241 Sum_probs=125.7
Q ss_pred CCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCc
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 644 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~ 644 (830)
+++++.|.+..+. ...+| .+..+++|++|++.++.... +..+.++++|++|++++|.+..++ .+..+++|+
T Consensus 40 l~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~-----~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 40 LDGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITD-----LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCC-----CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred cCCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCC-----ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 3455555554432 33344 46777777777777665332 222667777778888777777765 566777777
Q ss_pred eEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEc
Q 003321 645 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRL 724 (830)
Q Consensus 645 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l 724 (830)
+|++++|.+..... ...+++|+.|++++|. +..+|. ++.+++|++|++++|. +..++. +..+++|+.|++
T Consensus 111 ~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 111 TLDLTSTQITDVTP------LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp EEECTTSCCCCCGG------GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred EEECCCCCCCCchh------hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEEC
Confidence 77777776554211 2456777777777763 455554 6777777777777764 455554 777777777777
Q ss_pred ccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCc
Q 003321 725 YACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 725 ~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
++|. +..++. +..+++|++|++++| .+..++. +..+++|+.|++++|+ +...|.
T Consensus 181 ~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 181 DDNK-ISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCCE
T ss_pred CCCc-cCcChh-hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCCe
Confidence 7754 344544 677777777777775 4455553 6777777777777777 455443
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=6.7e-16 Score=159.89 Aligned_cols=178 Identities=20% Similarity=0.176 Sum_probs=90.8
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
...+++|+.|.+.++.. ..+..+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+. ...
T Consensus 37 ~~~l~~L~~L~l~~~~i-----~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~----~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI-----KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNG----VFD 106 (272)
T ss_dssp HHHHTTCCEEECTTSCC-----CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTT----TTT
T ss_pred cccccceeeeeeCCCCc-----ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChh----Hhc
Confidence 34555566665554432 12233455566666666666655543 455556666666665544422211 123
Q ss_pred CCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCc
Q 003321 667 TLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLK 744 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 744 (830)
.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+| ..++.+++|+.|++++|......|..++.+++|+
T Consensus 107 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 35566666666654 23333 335566666666666654 33333 2345566666666666543332233345566666
Q ss_pred EeccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 745 YLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 745 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
+|++++|......|..+..+++|+.|++++|+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666643322222335566666666666665
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=1e-15 Score=176.20 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=71.3
Q ss_pred ccceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccC
Q 003321 543 FNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 621 (830)
Q Consensus 543 ~~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 621 (830)
...+.+.+....+..... .-..+++++.|.+..+.. ....|..|.++++|++|++.++..... +.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~-~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQNI-----SCC-PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECTTSCCCEE-----CSC-CCTTCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-CcCCHHHhCCCCCCCEEECCCCcCCcc-----Ccc-ccccCC
Confidence 356777777666655532 123567788877766543 233467788889999999888765422 112 678888
Q ss_pred eeeecccccCccC--CCccccCCCceEEeeecccc
Q 003321 622 SLWLEKVSISQLP--KSSIPLKKMQKISFVLCKIN 654 (830)
Q Consensus 622 ~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~ 654 (830)
+|++++|.+..+| ..+..+++|++|++++|.+.
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 8888888888654 56778888888888877654
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=4.2e-16 Score=184.14 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=148.3
Q ss_pred ccceEEEeeeCCccccccc-ccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccC
Q 003321 543 FNAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 621 (830)
Q Consensus 543 ~~~~~lsi~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 621 (830)
...+.+.+....+...... -..+++++.|.+..+.. ....|..+.++++|++|++.++...... ...+.++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLS---DKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-CCCCTTHHHHCTTCCEEECCSSCCCCCC---TTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-CccCHHHHhcccCcCEEECCCCccCccC---hhhhccCCCCC
Confidence 4567777776665544321 23457777777765543 2344677888899999988776543211 12367888888
Q ss_pred eeeecccccCccC-CCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccccc--CCCCCCCEE
Q 003321 622 SLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI--CGLQSLKNL 698 (830)
Q Consensus 622 ~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i--~~l~~L~~L 698 (830)
+|++++|.+..+| ..+..+++|++|++++|.+....+.. ...+++|++|++++|......|..+ ..+++|++|
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 8888888888776 45778888888888888765433322 2456778888887774322223322 245677777
Q ss_pred EeeCcCCCCccchhcCCC---------------------------CCCCEEEcccCCCCCccchhhcCCCC--CcEeccc
Q 003321 699 SVTNCHSLQELPADIGKM---------------------------KSLQILRLYACPHLRTLPARICELVC--LKYLNIS 749 (830)
Q Consensus 699 ~L~~c~~l~~lp~~i~~l---------------------------~~L~~L~l~~~~~l~~lp~~~~~l~~--L~~L~L~ 749 (830)
++++|......|..+..+ ++|+.|++++|......|..+..++. |++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 777765333333333322 34455555554444444444554433 6666666
Q ss_pred cccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCc
Q 003321 750 QCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEE 798 (830)
Q Consensus 750 ~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~ 798 (830)
+|......|..++.+++|++|++++|......|..+..+++|+.|++.+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 6543333344566666666666666664445555566666666665544
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=6.2e-16 Score=160.69 Aligned_cols=200 Identities=17% Similarity=0.143 Sum_probs=119.5
Q ss_pred ccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCCceEEeeeccccccccccccCcCCCCC
Q 003321 591 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP 669 (830)
Q Consensus 591 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 669 (830)
++|++|++.++....... ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+....+. ....++
T Consensus 28 ~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCT
T ss_pred CCccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh----hhcCCc
Confidence 357777776655433221 235566777777777777776654 466677777777776665433222 224466
Q ss_pred ccceeccccccccCccccccCCCCCCCEEEeeCcCCCC-ccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCc----
Q 003321 670 CLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQ-ELPADIGKMKSLQILRLYACPHLRTLPARICELVCLK---- 744 (830)
Q Consensus 670 ~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~---- 744 (830)
+|++|++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|......+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 77777777764333223356777777777777765333 2566777777777777777654433344455555554
Q ss_pred EeccccccccCcchhhhccCCCCcEEeccCccCCccCCc-cccccccCceeecCch
Q 003321 745 YLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEED 799 (830)
Q Consensus 745 ~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~ 799 (830)
+|++++| .+..+|.......+|+.|++++|. +..+|. .+..+++|+.|++++|
T Consensus 181 ~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 181 SLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 6777764 445555554455577777777776 445554 3466777777766543
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=3.2e-15 Score=167.75 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=66.1
Q ss_pred cCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCc
Q 003321 689 ICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLE 768 (830)
Q Consensus 689 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~ 768 (830)
++.+++|++|++++|. +..++ .+..+++|+.|++++|... .++. +..+++|++|++++| .+..+|. +..+++|+
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~ 290 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALT 290 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCS
T ss_pred ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccC
Confidence 3344444444444433 22222 3445555555555554332 2322 556666666666654 3344444 66667777
Q ss_pred EEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeeecccc
Q 003321 769 KIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 769 ~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 822 (830)
.|++++|. +..+|. +..+++|+.|++++|....... ...+|+|+......|
T Consensus 291 ~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 291 NLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred eEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 77777766 444443 6667777777776664333322 346666666554443
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=185.93 Aligned_cols=274 Identities=14% Similarity=0.014 Sum_probs=154.9
Q ss_pred CccceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCcccc
Q 003321 542 PFNAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNL 620 (830)
Q Consensus 542 ~~~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L 620 (830)
+...+.+.+....+..... .-..+++++.|.+..+.......|..|.++++|++|++.++...... ...+.++++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSSC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCccc
Confidence 3456666666655544321 11245666666665553322222566777777777777665543221 2335566666
Q ss_pred CeeeecccccCc-cCCC--ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccc----------------
Q 003321 621 RSLWLEKVSISQ-LPKS--SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDD---------------- 681 (830)
Q Consensus 621 ~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------- 681 (830)
++|+|++|.+.. +|.. +..+++|++|++++|.+...... .....+++|+.|++++|..
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 666666666653 3433 55666666666666655432211 1113345555555555432
Q ss_pred ----------cCccccccCCCCC------CCEEEeeCcCCCCccchhc--------------------------------
Q 003321 682 ----------LMKLPPSICGLQS------LKNLSVTNCHSLQELPADI-------------------------------- 713 (830)
Q Consensus 682 ----------l~~lp~~i~~l~~------L~~L~L~~c~~l~~lp~~i-------------------------------- 713 (830)
....|..++.+.+ |++|++++|......|..+
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 2233333333333 6677776663322222111
Q ss_pred ----CC--CCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccc
Q 003321 714 ----GK--MKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNS 787 (830)
Q Consensus 714 ----~~--l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~ 787 (830)
.. .++|+.|++++|......|..+..+++|+.|+|++|......|..+..+++|+.|++++|......|..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 11 256777777776655555666788888888888886554455667888888899998888855555778888
Q ss_pred cccCceeecCchhhhhHHH-HhhhCCCceeeeccc
Q 003321 788 LKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVPAK 821 (830)
Q Consensus 788 l~~L~~l~~~~~~~~~~~~-l~~~lp~L~~~~~~~ 821 (830)
+++|+.|++++|....... .-+.+|+|+......
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 8888888888763222111 123466666654444
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.6e-16 Score=178.76 Aligned_cols=222 Identities=13% Similarity=0.041 Sum_probs=172.2
Q ss_pred cccChhhhhc----ccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeecccccc
Q 003321 581 YFLPPFIENM----EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNS 656 (830)
Q Consensus 581 ~~lp~~i~~l----~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 656 (830)
..+|..+..+ ++|++|++.++...... ...+.++++|++|+|++|.+..+++ +..+++|++|++++|.+...
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC
Confidence 3455555554 48999999987654322 2357899999999999999987665 88999999999999876532
Q ss_pred ccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh
Q 003321 657 LDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR 736 (830)
Q Consensus 657 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 736 (830)
. ..++|+.|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++++|......|..
T Consensus 96 ~---------~~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 96 L---------VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp E---------ECTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred C---------CCCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 1 24799999999985 455554 35789999999998866666778899999999999998777667777
Q ss_pred hc-CCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCce
Q 003321 737 IC-ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLH 815 (830)
Q Consensus 737 ~~-~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~ 815 (830)
+. .+++|++|+|++|. +..+|. ...+++|+.|++++|. +..+|..+..+++|+.|++++|.....+...+.+|+|+
T Consensus 164 l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 76 79999999999964 566654 4569999999999998 67787789999999999999885444333334566776
Q ss_pred eeeccc
Q 003321 816 VQVPAK 821 (830)
Q Consensus 816 ~~~~~~ 821 (830)
.....+
T Consensus 241 ~L~l~~ 246 (487)
T 3oja_A 241 HFDLRG 246 (487)
T ss_dssp EEECTT
T ss_pred EEEcCC
Confidence 665444
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.2e-15 Score=159.23 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=125.2
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC-CCccccCCCceEEeeeccccccccccccCcC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVLCKINNSLDQSVVDLP 665 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 665 (830)
+.++++++.+++.++...... ..+ .++|++|++++|.+..++ ..+..+++|++|++++|.+......
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip----~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP----PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------ 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC----SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------
T ss_pred ccccCCccEEECCCCCCCcCC----CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------
Confidence 445666677766554432211 111 246777777777777554 4466677777777776665432111
Q ss_pred CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCc
Q 003321 666 KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLK 744 (830)
Q Consensus 666 ~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 744 (830)
..+++|+.|++++| .+..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 34677777777776 456777777777777777777765 34444 5577777777777777644333333456777777
Q ss_pred EeccccccccCcchhh-hccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 745 YLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 745 ~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
.|+|++| .++.+|.. +..+++|+.|++++|. +..+|..+..+.+|+.+++.+|
T Consensus 152 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 152 KLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred EEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 7777774 45566654 4667777778777776 6677777777777777765544
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=4.1e-15 Score=166.89 Aligned_cols=211 Identities=19% Similarity=0.278 Sum_probs=110.0
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
+.++++|++|++.++... .+..+.++++|++|++++|.+..++. +..+++|++|++++|.+... ....
T Consensus 173 ~~~l~~L~~L~l~~n~l~-----~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~l~ 240 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI------GTLA 240 (466)
T ss_dssp GTTCTTCCEEECCSSCCC-----CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC------GGGG
T ss_pred hccCCCCCEEECcCCcCC-----CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc------hhhh
Confidence 455555555555544322 12234455556666666655554443 44455566666655544321 0112
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|+.|++++|. +..+++ +..+++|++|++++|. +..++. +..+++|+.|++++|. +..++. ++.+++|++|
T Consensus 241 ~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEE
T ss_pred cCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEE
Confidence 35566666666653 333333 5566666666666654 333333 5566666666666654 333333 5566666666
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeeecc
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPA 820 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~ 820 (830)
++++|. +..++. +..+++|+.|++++|. +..++ .+.++++|+.|++++|....+.. ...+|+|+.....
T Consensus 315 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 315 TLYFNN-ISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp ECCSSC-CSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECC
T ss_pred ECcCCc-CCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEecc
Confidence 666653 333332 5566666666666665 44443 45566666666666554433333 3355555544433
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=5.3e-16 Score=179.31 Aligned_cols=206 Identities=20% Similarity=0.216 Sum_probs=117.2
Q ss_pred CCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCc---------------CCCCCccceecccc
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDL---------------PKTLPCLTELTFDH 678 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------~~~~~~L~~L~l~~ 678 (830)
+.++++|++|++++|.+..+|..+..+ +|++|++.+|.+..........+ ...+++|+.|++++
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 445678888888888888888777766 77777777666542111100000 02345555555555
Q ss_pred ccc-------------------------cCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCc
Q 003321 679 CDD-------------------------LMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRT 732 (830)
Q Consensus 679 ~~~-------------------------l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~ 732 (830)
|.. +..+|..++.+++|++|++++|......| ..+..+++|++|++++|.....
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 431 12223334444555555555543222222 2455666666666666655555
Q ss_pred cchhhcCCCCCcEecccccccc-CcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHH-HHhhh
Q 003321 733 LPARICELVCLKYLNISQCVSL-SCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWK-DLEKT 810 (830)
Q Consensus 733 lp~~~~~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~-~l~~~ 810 (830)
.|..+..+++|++|++++|... ..+|..+..+++|+.|++++|......|..+.++++|+.|++++|...... .....
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 5666667777777777776543 356666777777777777777754455667777777777777666322211 12235
Q ss_pred CCCceeeecc
Q 003321 811 LPNLHVQVPA 820 (830)
Q Consensus 811 lp~L~~~~~~ 820 (830)
+|+|+.....
T Consensus 517 l~~L~~L~l~ 526 (570)
T 2z63_A 517 LTSLQKIWLH 526 (570)
T ss_dssp CTTCCEEECC
T ss_pred ccCCcEEEec
Confidence 5566554433
No 60
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=1.4e-16 Score=170.81 Aligned_cols=226 Identities=16% Similarity=0.216 Sum_probs=173.5
Q ss_pred Chhhhhc--ccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCc--cCCCccccCCCceEEeeeccccccccc
Q 003321 584 PPFIENM--EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKINNSLDQ 659 (830)
Q Consensus 584 p~~i~~l--~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~ 659 (830)
|..+..+ ++++.|++.++..... ...+.++++|++|++++|.+.. +|..+..+++|++|++++|.+......
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQP----LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSC----CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCcccccc----chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 4556777 8999999877654322 2335678999999999998873 777788899999999998875543333
Q ss_pred cccCcCCCCCccceeccccccccC--ccccccCCCCCCCEEEeeCcCCCCc--cchhcCCCC-CCCEEEcccCC-CC--C
Q 003321 660 SVVDLPKTLPCLTELTFDHCDDLM--KLPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMK-SLQILRLYACP-HL--R 731 (830)
Q Consensus 660 ~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~-~L~~L~l~~~~-~l--~ 731 (830)
.+ ..+++|++|++++|..+. .+|..+..+++|++|++++|..+.. ++..+..++ +|++|++++|. .+ .
T Consensus 137 ~l----~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 TL----AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HH----TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HH----hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 22 348999999999996665 3777788999999999999955654 677788899 99999999985 33 4
Q ss_pred ccchhhcCCCCCcEeccccccccC-cchhhhccCCCCcEEeccCccCCc-cCCccccccccCceeecCchhhhh-HHHHh
Q 003321 732 TLPARICELVCLKYLNISQCVSLS-CLPQGIGNLIRLEKIDMRECSQIW-SLPKSVNSLKSLRQVICEEDVSWA-WKDLE 808 (830)
Q Consensus 732 ~lp~~~~~l~~L~~L~L~~c~~l~-~lp~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~l~~~~~~~~~-~~~l~ 808 (830)
.+|..+..+++|++|++++|..++ ..+..+..+++|+.|++++|..+. .....+.++++|+.|+++++.... ...+.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~ 292 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHH
Confidence 577778899999999999987443 566788999999999999996222 111257789999999998884432 45566
Q ss_pred hhCCCceee
Q 003321 809 KTLPNLHVQ 817 (830)
Q Consensus 809 ~~lp~L~~~ 817 (830)
..+|+|++.
T Consensus 293 ~~l~~L~l~ 301 (336)
T 2ast_B 293 EALPHLQIN 301 (336)
T ss_dssp HHSTTSEES
T ss_pred hhCcceEEe
Confidence 679999864
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=4e-15 Score=165.73 Aligned_cols=219 Identities=18% Similarity=0.191 Sum_probs=147.5
Q ss_pred ceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeee
Q 003321 545 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 624 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 624 (830)
.+.+.+....+.....+ ..+++++.|.+..+. ...+| ++.+++|++|++.++..... .++++++|++|+
T Consensus 44 L~~L~Ls~n~l~~~~~l-~~l~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~ 112 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGI-EKLTGLTKLICTSNN--ITTLD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLN 112 (457)
T ss_dssp CCEEECCSSCCCCCTTG-GGCTTCSEEECCSSC--CSCCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEE
T ss_pred CCEEEccCCCcccChhh-cccCCCCEEEccCCc--CCeEc--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEE
Confidence 45666665555544321 245666776665544 23344 67778888888877654331 266778888888
Q ss_pred ecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcC
Q 003321 625 LEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCH 704 (830)
Q Consensus 625 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~ 704 (830)
+++|.+..+| +..+++|++|++++|.+... + ...+++|+.|++++|..++.+ .++.+++|++|++++|.
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCcccee-c------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 8888887775 67778888888887766542 1 245778888888888666666 37778888888888875
Q ss_pred CCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCcc
Q 003321 705 SLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 784 (830)
Q Consensus 705 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~ 784 (830)
++.+| ++.+++|+.|++++|. +..++ ++.+++|++|++++| .+..+| ++.+++|+.|++++|. +..+|
T Consensus 182 -l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~-- 249 (457)
T 3bz5_A 182 -ITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD-- 249 (457)
T ss_dssp -CCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred -cceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--
Confidence 55565 7788888888888765 34443 778888888888885 455576 7788888888888887 45555
Q ss_pred ccccccCceeecC
Q 003321 785 VNSLKSLRQVICE 797 (830)
Q Consensus 785 ~~~l~~L~~l~~~ 797 (830)
++.+++|+.+++.
T Consensus 250 ~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 250 VSTLSKLTTLHCI 262 (457)
T ss_dssp CTTCTTCCEEECT
T ss_pred HHHCCCCCEEecc
Confidence 3445555544443
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=4.2e-15 Score=153.73 Aligned_cols=186 Identities=25% Similarity=0.286 Sum_probs=121.3
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCc-cccCCCceEEeeecccccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSS-IPLKKMQKISFVLCKINNSLD 658 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~~ 658 (830)
...+|..+. ++|+.|++.++...... ...+.++++|++|++++|.+..+|..+ ..+++|++|++++|.+.....
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred CCccCCCCC--CCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 334554332 56888888766543221 124667788888888888888777664 567888888888776553222
Q ss_pred ccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccchhh
Q 003321 659 QSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPARI 737 (830)
Q Consensus 659 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~ 737 (830)
.....+++|++|++++|......|..++.+++|++|++++|. +..+|. .++.+++|+.|++++|......+..+
T Consensus 103 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 103 ----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp ----TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 222456778888887775333334456778888888888765 445553 36777888888887765433333446
Q ss_pred cCCCCCcEeccccccccCcchhh-hccCCCCcEEeccCcc
Q 003321 738 CELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECS 776 (830)
Q Consensus 738 ~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 776 (830)
..+++|++|+|++| .+..+|.. +..+++|+.|++++|+
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 178 DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 77788888888775 44555543 6777788888888776
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.2e-15 Score=152.87 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=149.9
Q ss_pred ccCceEEEccccCCccccCCCCCCCCccccCeeeecccc-cCccCC-CccccCCCceEEeee-ccccccccccccCcCCC
Q 003321 591 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQLPK-SSIPLKKMQKISFVL-CKINNSLDQSVVDLPKT 667 (830)
Q Consensus 591 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~ 667 (830)
++|++|++.++....... ..+.++++|++|++++|. +..++. .+..+++|++|++++ |.+....+.. ...
T Consensus 31 ~~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS----EEC
T ss_pred CcccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCC
Confidence 378899988776543322 246788999999999996 888876 577889999999998 6654322222 245
Q ss_pred CCccceeccccccccCccccccCCCCCCC---EEEeeCcCCCCccch-hcCCCCCCC-EEEcccCCCCCccchhhcCCCC
Q 003321 668 LPCLTELTFDHCDDLMKLPPSICGLQSLK---NLSVTNCHSLQELPA-DIGKMKSLQ-ILRLYACPHLRTLPARICELVC 742 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~~i~~l~~L~---~L~L~~c~~l~~lp~-~i~~l~~L~-~L~l~~~~~l~~lp~~~~~l~~ 742 (830)
+++|++|++++|. +..+|. ++.+++|+ +|++++|..+..+|. .+..+++|+ .|++++|. +..+|......++
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTK 180 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCE
T ss_pred CCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCC
Confidence 7889999999885 566887 88888888 999999855777775 488899999 99999865 4577776555589
Q ss_pred CcEeccccccccCcchh-hhccC-CCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 743 LKYLNISQCVSLSCLPQ-GIGNL-IRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 743 L~~L~L~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|++|++++|..++.+|. .+..+ ++|+.|++++|. +..+|.. .+++|+.|++.++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCc
Confidence 99999999766777754 47888 999999999988 6777765 6778888877654
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=6.7e-16 Score=177.52 Aligned_cols=178 Identities=14% Similarity=0.057 Sum_probs=118.5
Q ss_pred cceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 544 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
..+.+.+....+..... .-..+++++.|.+..+.. ....|..|.++++|++|++.++...... ...++++++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCSCC---HHHHTTCTTCCE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCccCccC---HHHhccCCCCcE
Confidence 46677776665554321 113456777777665543 2234466888888888888776543221 123667888888
Q ss_pred eeecccccCc--cCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEe
Q 003321 623 LWLEKVSISQ--LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 700 (830)
Q Consensus 623 L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L 700 (830)
|++++|.+.. .|..+..+++|++|++++|.....++. .....+++|++|++++|......|..++.+++|++|++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCH---hhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 8888888874 456778888888888888764333321 12345778888888888665667788888888888888
Q ss_pred eCcCCCCccchhc-CCCCCCCEEEcccCCC
Q 003321 701 TNCHSLQELPADI-GKMKSLQILRLYACPH 729 (830)
Q Consensus 701 ~~c~~l~~lp~~i-~~l~~L~~L~l~~~~~ 729 (830)
++|. ...+|..+ +.+++|++|++++|..
T Consensus 180 ~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 180 HLSE-SAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp ECSB-STTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ccCc-ccccchhhHhhcccccEEEccCCcc
Confidence 8875 34555443 4688888888887653
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=176.78 Aligned_cols=219 Identities=19% Similarity=0.203 Sum_probs=168.2
Q ss_pred ceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCcc---CCCccccCCC
Q 003321 567 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQL---PKSSIPLKKM 643 (830)
Q Consensus 567 ~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L 643 (830)
+++.|.+..+.. ..+|. ..+++|++|.+.++..... .....+++|++|++++|.+..+ |..+..+++|
T Consensus 305 ~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 305 GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCB-----CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred CccEEeeccCcc--cccCc--ccccccCEEeCcCCccccc-----cccccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 555555544432 24454 4677777777776543221 1126788999999999988865 5677889999
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 722 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 722 (830)
++|++++|.+....+. ...+++|+.|++++|......| ..+..+++|++|++++|......|..+..+++|+.|
T Consensus 376 ~~L~l~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CEEECCSCSEEEEEEE-----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CEEECCCCcccccccc-----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 9999998876543222 2458899999999986544444 468899999999999998766778889999999999
Q ss_pred EcccCCCC-CccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 723 RLYACPHL-RTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 723 ~l~~~~~l-~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
++++|... ..+|..++.+++|++|++++|......|..+..+++|+.|++++|......|..+.++++|+.+++++|
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 99998765 468888999999999999997655555888999999999999999854455567889999999987765
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=6.7e-15 Score=152.18 Aligned_cols=194 Identities=20% Similarity=0.238 Sum_probs=149.3
Q ss_pred cCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCCceEEeeeccccccccccccCcCCCCCc
Q 003321 592 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 670 (830)
Q Consensus 592 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 670 (830)
+.+++++.+....... ..+ .++|++|++++|.+..+|. .+..+++|++|++++|.+..... .....+++
T Consensus 17 ~~~~l~~~~~~l~~ip----~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~----~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP----SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA----GIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCC----SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT----TTTSSCTT
T ss_pred CCCEEEccCCCCCccC----CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh----hhhcCCCC
Confidence 5677777655433211 111 2579999999999998886 68889999999999987664322 22356899
Q ss_pred cceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEecc
Q 003321 671 LTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNI 748 (830)
Q Consensus 671 L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L 748 (830)
|++|++++|. +..+| ..+..+++|++|++++|......+..++.+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 87 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe
Confidence 9999999985 55565 456899999999999987544445668899999999999975 445554 4789999999999
Q ss_pred ccccccCcchh-hhccCCCCcEEeccCccCCccCCc-cccccccCceeecCch
Q 003321 749 SQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEED 799 (830)
Q Consensus 749 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~ 799 (830)
++| .+..+|. .+..+++|+.|++++|. +..+|. .+..+++|+.|++++|
T Consensus 165 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 165 YNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCC
Confidence 996 4555654 58899999999999998 566665 5788999999987766
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=4.5e-15 Score=165.33 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=167.0
Q ss_pred cceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCee
Q 003321 544 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 623 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 623 (830)
..+.+.+....+..+. -..+++++.|.+..+.. ..+| ++++++|++|++.++.... ++ ++++++|++|
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l--~~~~--~~~l~~L~~L~L~~N~l~~-----l~-~~~l~~L~~L 132 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLTK-----LD-VSQNPLLTYL 132 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC--SCCC--CTTCTTCCEEECCSSCCSC-----CC-CTTCTTCCEE
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC--ceee--cCCCCcCCEEECCCCcCCe-----ec-CCCCCcCCEE
Confidence 4567777666665553 23456777777665543 3344 7788889999888775433 22 6788888999
Q ss_pred eecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCc
Q 003321 624 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 703 (830)
Q Consensus 624 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c 703 (830)
++++|.+..++ +..+++|++|+++.|.....++ ...+++|+.|++++| .+..+| ++.+++|+.|++++|
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC
Confidence 99988888875 7778888999888875443331 245788888998887 456676 788888999999887
Q ss_pred CCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcch-hhhccCC-------CCcEEeccCc
Q 003321 704 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP-QGIGNLI-------RLEKIDMREC 775 (830)
Q Consensus 704 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~-------~L~~L~l~~~ 775 (830)
. +..+ .++.+++|+.|++++|. +..+| ++.+++|++|++++| .+..+| ..+.+|+ +|+.|++++|
T Consensus 202 ~-l~~~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 202 N-ITKL--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp C-CSCC--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred c-CCee--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 6 4444 37888889999988865 44566 778888999998886 444444 2233332 4455666666
Q ss_pred cCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeeeccccccCCCC
Q 003321 776 SQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFSLDWL 828 (830)
Q Consensus 776 ~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~l~~l 828 (830)
..++.+| ++.+++|+.|++++|..... +....++|+......|.+|++|
T Consensus 275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~--l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 275 TQLIYFQ--AEGCRKIKELDVTHNTQLYL--LDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp TTCCEEE--CTTCTTCCCCCCTTCTTCCE--EECTTCCCSCCCCTTCTTCCEE
T ss_pred ccCCccc--ccccccCCEEECCCCcccce--eccCCCcceEechhhcccCCEE
Confidence 6566666 45678888888877743221 1123344555555555555543
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=183.84 Aligned_cols=250 Identities=17% Similarity=0.134 Sum_probs=177.4
Q ss_pred CCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC--CCccccC
Q 003321 564 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP--KSSIPLK 641 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp--~~~~~l~ 641 (830)
.+++++.|.+..+.. ....|..|.++++|++|++.++........ ...+.++++|++|+|++|.+..++ ..+..++
T Consensus 71 ~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 71 NLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SCTTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred CCCCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 457778777765543 234577889999999999988765432111 123778899999999999888654 4578899
Q ss_pred CCceEEeeeccccccccccccC----------------------cCCCCC------ccceeccccccccCcccccc----
Q 003321 642 KMQKISFVLCKINNSLDQSVVD----------------------LPKTLP------CLTELTFDHCDDLMKLPPSI---- 689 (830)
Q Consensus 642 ~L~~L~l~~~~~~~~~~~~~~~----------------------~~~~~~------~L~~L~l~~~~~l~~lp~~i---- 689 (830)
+|++|++++|.+....+..+.. ....++ .|+.|++++|......|..+
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 9999999988765432222110 001122 38999999885333333221
Q ss_pred --------------------------------CC--CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccch
Q 003321 690 --------------------------------CG--LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA 735 (830)
Q Consensus 690 --------------------------------~~--l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 735 (830)
.. .++|+.|++++|......|..+..+++|+.|++++|......|.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 11 26899999999876655677889999999999999877666677
Q ss_pred hhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCce
Q 003321 736 RICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLH 815 (830)
Q Consensus 736 ~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~ 815 (830)
.+..+++|++|+|++|......|..+..+++|+.|++++|......|..+..+++|+.|++++|.... + ..+|+|+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---i-~~~~~L~ 384 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---I-HFIPSIP 384 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC---C-SSCCSCS
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc---c-cCCCCcc
Confidence 89999999999999976555557789999999999999998444444568889999999998774322 1 1255655
Q ss_pred eeec
Q 003321 816 VQVP 819 (830)
Q Consensus 816 ~~~~ 819 (830)
....
T Consensus 385 ~L~l 388 (844)
T 3j0a_A 385 DIFL 388 (844)
T ss_dssp EEEE
T ss_pred hhcc
Confidence 5433
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=1.4e-15 Score=179.65 Aligned_cols=245 Identities=17% Similarity=0.086 Sum_probs=177.8
Q ss_pred CceEEEEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCC
Q 003321 566 PKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKM 643 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L 643 (830)
++++.|.+..+. ...+| ..|.++++|++|++.++...... ...+.++++|++|++++|.+..+|. .+..+++|
T Consensus 25 ~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccC---HHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 456666665543 34444 46999999999999877543221 2346788999999999999999997 48899999
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhc--CCCCCCCE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADI--GKMKSLQI 721 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i--~~l~~L~~ 721 (830)
++|++++|.+....+.. ...+++|++|++++|......|..++++++|++|++++|......+..+ ..+++|+.
T Consensus 100 ~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp SEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999998875433322 3568999999999997666667788999999999999987444334444 35689999
Q ss_pred EEcccCCCCCccchhhcCC---------------------------CCCcEeccccccccCcchhhhccCCC--CcEEec
Q 003321 722 LRLYACPHLRTLPARICEL---------------------------VCLKYLNISQCVSLSCLPQGIGNLIR--LEKIDM 772 (830)
Q Consensus 722 L~l~~~~~l~~lp~~~~~l---------------------------~~L~~L~L~~c~~l~~lp~~l~~l~~--L~~L~l 772 (830)
|++++|......|..+..+ ++|+.|++++|......|..+..++. |+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 9999986555555555544 45667777776544455666777755 999999
Q ss_pred cCccCCccCCccccccccCceeecCchhhhhH-HHHhhhCCCceeeec
Q 003321 773 RECSQIWSLPKSVNSLKSLRQVICEEDVSWAW-KDLEKTLPNLHVQVP 819 (830)
Q Consensus 773 ~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~-~~l~~~lp~L~~~~~ 819 (830)
++|......|..+..+++|+.|+++++..... ......+++|+....
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 99986556677899999999999887733221 112235566665544
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=9.7e-16 Score=176.15 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=106.8
Q ss_pred cceEEEeeeCCcccccc-cccCCCceEEEEeeCccCcccccC-hhhhhcccCceEEEccccCCccccCCCCCCCCccccC
Q 003321 544 NAQIVSIHTGDMREMDW-FRMEFPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 621 (830)
Q Consensus 544 ~~~~lsi~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~lp-~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 621 (830)
..+.+.+....+..... .-..+++++.|.+..+. ...+| ..++++++|++|++.++..... .....+.++++|+
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~ 126 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQ 126 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSS--CSSCSCTTCTTCC
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCccccc--chhhhhhccCCcc
Confidence 35666666555544331 11346778887776554 34444 4599999999999988765421 1224578899999
Q ss_pred eeeecccc-cCccC-CCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccccc-CCCCCCCEE
Q 003321 622 SLWLEKVS-ISQLP-KSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI-CGLQSLKNL 698 (830)
Q Consensus 622 ~L~L~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L 698 (830)
+|++++|. +..+| ..+..+++|++|++++|.+....+.. ...+++|+.|++++|. ...+|..+ +.+++|++|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYL 201 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT----TTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEE
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh----hhccccCceEecccCc-ccccchhhHhhcccccEE
Confidence 99999998 66776 46888999999999998876544433 3557899999999875 45555543 468888899
Q ss_pred EeeCcCC
Q 003321 699 SVTNCHS 705 (830)
Q Consensus 699 ~L~~c~~ 705 (830)
++++|..
T Consensus 202 ~L~~n~l 208 (549)
T 2z81_A 202 ELRDTNL 208 (549)
T ss_dssp EEESCBC
T ss_pred EccCCcc
Confidence 8888753
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=3e-16 Score=166.09 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=165.0
Q ss_pred ccChhhhhcccCceEEEccccCCccccCCCCCCC-------CccccCeeeecccccC-ccCCCc--cccCCCceEEeeec
Q 003321 582 FLPPFIENMEKLRALIVINYSTSNAALGNFSVCS-------NLTNLRSLWLEKVSIS-QLPKSS--IPLKKMQKISFVLC 651 (830)
Q Consensus 582 ~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~-------~l~~L~~L~L~~~~i~-~lp~~~--~~l~~L~~L~l~~~ 651 (830)
.+|..+... |++|++.++...... ....+. ++++|++|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAAR--IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEE--CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred ccHHHHHHH--HhhcccccccccCCC--cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC
Confidence 567666554 777777766542211 111122 5789999999999998 688876 78999999999999
Q ss_pred cccccccccccCcC-CCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCc--cchhc--CCCCCCCEEEccc
Q 003321 652 KINNSLDQSVVDLP-KTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE--LPADI--GKMKSLQILRLYA 726 (830)
Q Consensus 652 ~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i--~~l~~L~~L~l~~ 726 (830)
.+... +..+..+. ..+++|++|++++|......|..++.+++|++|++++|..... +|..+ +.+++|++|++++
T Consensus 132 ~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (312)
T 1wwl_A 132 SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210 (312)
T ss_dssp BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence 87764 33222110 1138999999999965554558899999999999999875544 45555 8999999999999
Q ss_pred CCCCC--ccc-hhhcCCCCCcEeccccccccCcch-hhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhh
Q 003321 727 CPHLR--TLP-ARICELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 802 (830)
Q Consensus 727 ~~~l~--~lp-~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~ 802 (830)
|.... .++ ..+..+++|++|++++|......| ..+..+++|+.|++++|. +..+|..+. ++|+.|++++|...
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC
Confidence 75431 233 234678999999999975444443 346678999999999998 669998877 89999999988544
Q ss_pred hHHHHhhhCCCceeeec
Q 003321 803 AWKDLEKTLPNLHVQVP 819 (830)
Q Consensus 803 ~~~~l~~~lp~L~~~~~ 819 (830)
..+. ...+|+|+....
T Consensus 288 ~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSL 303 (312)
T ss_dssp SCCC-TTTSCEEEEEEC
T ss_pred CChh-HhhCCCCCEEec
Confidence 4322 346666665543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=5.7e-16 Score=164.32 Aligned_cols=218 Identities=13% Similarity=0.036 Sum_probs=166.5
Q ss_pred hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCc
Q 003321 585 PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDL 664 (830)
Q Consensus 585 ~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 664 (830)
..+..+++|++|++.++...... ...+.++++|++|++++|.+..++. +..+++|++|++++|.+....
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~------- 96 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL------- 96 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCC---HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-------
T ss_pred HHhccCCCCCEEECcCCccCcCC---HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-------
Confidence 34556779999999887654321 1346789999999999999987765 888999999999998765321
Q ss_pred CCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhh-cCCCCC
Q 003321 665 PKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI-CELVCL 743 (830)
Q Consensus 665 ~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L 743 (830)
..++|+.|++++|. +..++. ..+++|++|++++|......|..++.+++|++|++++|......|..+ ..+++|
T Consensus 97 --~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 --VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp --ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 24899999999985 555553 347899999999987555445678889999999999987655555655 478999
Q ss_pred cEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeeeccc
Q 003321 744 KYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAK 821 (830)
Q Consensus 744 ~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~ 821 (830)
++|++++| .+..+|. ...+++|+.|++++|. +..+|..+..+++|+.|++++|...........+|+|+.....+
T Consensus 172 ~~L~L~~N-~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 172 EHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CEEECTTS-CCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred CEEECCCC-cCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 99999996 4666654 4469999999999998 77788889999999999999884443332234566666654443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1e-14 Score=152.27 Aligned_cols=183 Identities=23% Similarity=0.260 Sum_probs=136.6
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQ 659 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 659 (830)
...+|..+. ++++.|++.++....... ..+.++++|++|++++|.+..++.. ..+++|++|++++|.+..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~---- 91 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSL---ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS---- 91 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEG---GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSS----
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCH---HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCc----
Confidence 445665443 678888888776543322 3467788889999998888887765 678889999998887652
Q ss_pred cccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchh-
Q 003321 660 SVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPAR- 736 (830)
Q Consensus 660 ~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~- 736 (830)
++.....+++|++|++++|. +..+| ..+..+++|++|++++|. +..+| ..+..+++|+.|++++|. +..+|..
T Consensus 92 -l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 167 (290)
T 1p9a_G 92 -LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGL 167 (290)
T ss_dssp -CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTT
T ss_pred -CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHH
Confidence 22233567889999998885 45555 568889999999999876 44555 446788999999998865 5566654
Q ss_pred hcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccC
Q 003321 737 ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
+..+++|++|+|++| .+..+|..+..+++|+.|++++|+.
T Consensus 168 ~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 168 LNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred hcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 577899999999884 6678888888888999999998874
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=4.6e-16 Score=166.80 Aligned_cols=221 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CceEEEccccCCccccCCCCCCCCc--cccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCc
Q 003321 593 LRALIVINYSTSNAALGNFSVCSNL--TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 670 (830)
Q Consensus 593 Lr~L~l~~~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 670 (830)
++.+++.++.... ..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+... .++.....+++
T Consensus 49 ~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCC
T ss_pred heeeccccccCCH------HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCC
Confidence 5677776554321 123445 789999999999998888888999999999999875432 12223356899
Q ss_pred cceeccccccccCccccccCCCCCCCEEEeeCcCCCCc--cchhcCCCCCCCEEEcccCCCCCc--cchhhcCCC-CCcE
Q 003321 671 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMKSLQILRLYACPHLRT--LPARICELV-CLKY 745 (830)
Q Consensus 671 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~l~-~L~~ 745 (830)
|++|++++|......|..++.+++|++|++++|..+.. ++..+..+++|++|++++|..+.. ++..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 99999999965456788899999999999999966663 777788999999999999955654 677789999 9999
Q ss_pred ecccccc-cc--CcchhhhccCCCCcEEeccCccCC-ccCCccccccccCceeecCchhhhhHHH--HhhhCCCceeeec
Q 003321 746 LNISQCV-SL--SCLPQGIGNLIRLEKIDMRECSQI-WSLPKSVNSLKSLRQVICEEDVSWAWKD--LEKTLPNLHVQVP 819 (830)
Q Consensus 746 L~L~~c~-~l--~~lp~~l~~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~l~~~~~~~~~~~~--l~~~lp~L~~~~~ 819 (830)
|++++|. .+ ..+|..+.++++|+.|++++|..+ ...+..+..+++|+.|++++|....... ..+.+|+|+....
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 9999985 34 457778889999999999999843 4677788999999999998875333332 2357999999887
Q ss_pred ccc
Q 003321 820 AKC 822 (830)
Q Consensus 820 ~~~ 822 (830)
.+|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 776
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=2.5e-14 Score=164.16 Aligned_cols=222 Identities=22% Similarity=0.205 Sum_probs=150.5
Q ss_pred ccceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCe
Q 003321 543 FNAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS 622 (830)
Q Consensus 543 ~~~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 622 (830)
...+.+.+..+.+..+.. .+++++.|.+..+. ...+|. .+++|++|++.++.... ++. .+++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~-----l~~--~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTH-----LPA--LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCC-----CCC--CCTTCCE
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCC-----CCC--CCCCcCE
Confidence 356777777776665443 56778887776654 345665 67889999887765432 111 5678888
Q ss_pred eeecccccCccCCCccccCCCceEEeeeccccccccccc-------------cCcCCCCCccceeccccccccCcccccc
Q 003321 623 LWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSV-------------VDLPKTLPCLTELTFDHCDDLMKLPPSI 689 (830)
Q Consensus 623 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~l~~lp~~i 689 (830)
|++++|.+..+|.. +++|++|++++|.+... +... ..++..+++|+.|++++|. +..+|..
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~~- 199 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTL- 199 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCC-
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCCc-
Confidence 88888888888865 37888888888766531 1110 0011223555666665553 4444432
Q ss_pred CCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcE
Q 003321 690 CGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEK 769 (830)
Q Consensus 690 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~ 769 (830)
+++|+.|++++|. +..+|. .+++|+.|++++| .+..+| ..+++|++|+|++| .++.+|. .+++|+.
T Consensus 200 --~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 --PSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLS 265 (622)
T ss_dssp --CTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred --cchhhEEECcCCc-ccccCC---CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcE
Confidence 3556666666653 444553 2478888888886 455677 45688999999986 6678876 6789999
Q ss_pred EeccCccCCccCCccccccccCceeecCchh
Q 003321 770 IDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 770 L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
|++++|. +..+|..+.++++|+.|++++|.
T Consensus 266 L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 266 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred EeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 9999997 67899999999999999998774
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=9.5e-15 Score=151.20 Aligned_cols=178 Identities=18% Similarity=0.171 Sum_probs=141.4
Q ss_pred CCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCC
Q 003321 613 VCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICG 691 (830)
Q Consensus 613 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~ 691 (830)
....+++|+.|+++++.+..++ .+..+++|++|++++|.+... + ....+++|++|++++|. +..+| ..++.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 3557889999999999998876 478899999999999887642 1 23568999999999985 45555 45789
Q ss_pred CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh-hhccCCCCcEE
Q 003321 692 LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKI 770 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L 770 (830)
+++|++|++++|......+..++.+++|++|++++|......|..++.+++|++|++++|. +..+|. .++.+++|+.|
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEE
Confidence 9999999999987544344557899999999999985443334457899999999999975 555554 47899999999
Q ss_pred eccCccCCccCCccccccccCceeecCch
Q 003321 771 DMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 771 ~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
++++|......|..+..+++|+.|++++|
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 99999955545556789999999998765
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=8.6e-15 Score=154.35 Aligned_cols=192 Identities=16% Similarity=0.258 Sum_probs=160.4
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
...+++|++|++.++... .++.+..+++|++|++++|.+..++. +..+++|++|++++|.+... + ...
T Consensus 37 ~~~l~~L~~L~l~~~~i~-----~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~-----~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-----TIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-S-----AIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-----CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-G-----GGT
T ss_pred HHHcCCcCEEEeeCCCcc-----CchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-h-----hhc
Confidence 567899999999877543 23457889999999999999999988 88999999999999987642 1 235
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|+.|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|++++|. +..++. +..+++|+.|
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTL 178 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEE
Confidence 68999999999985 666765 8999999999999986 566664 8899999999999974 556666 8999999999
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
++++| .+..++. +..+++|+.|++++|. +..+|. +..+++|+.|++++|.
T Consensus 179 ~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE
T ss_pred ECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe
Confidence 99996 5667765 8899999999999998 667763 8889999999988773
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=2.1e-15 Score=156.73 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=151.2
Q ss_pred cccCeeeecccccCccCC-CccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCC
Q 003321 618 TNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLK 696 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 696 (830)
++|++|++++|.+..++. .+..+++|++|++++|.+....+.. ...+++|++|++++|......|..+.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 579999999999998876 6888999999999998766433322 35688999999999864444457799999999
Q ss_pred EEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCC-ccchhhcCCCCCcEeccccccccCcchhhhccCCCCc----EEe
Q 003321 697 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLR-TLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLE----KID 771 (830)
Q Consensus 697 ~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~----~L~ 771 (830)
+|++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|......+..+..+++|+ .|+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 99999987544444478999999999999976544 3788999999999999999754433345566666666 899
Q ss_pred ccCccCCccCCccccccccCceeecCchhhhhHHH-HhhhCCCceeeecc
Q 003321 772 MRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKD-LEKTLPNLHVQVPA 820 (830)
Q Consensus 772 l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~-l~~~lp~L~~~~~~ 820 (830)
+++|. +..+|.......+|+.|++++|....... ....+|+|+.....
T Consensus 184 ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 184 LSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred cCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 99998 66666666666689999998774433322 23467777766544
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=6.4e-17 Score=177.02 Aligned_cols=236 Identities=10% Similarity=0.066 Sum_probs=158.4
Q ss_pred CCceEEEEeeCccCcc---cccChhhhhcccCceEEEccccCCccccCCC-------CCCCCccccCeeeecccccCc--
Q 003321 565 FPKAEVLILNFSSTEE---YFLPPFIENMEKLRALIVINYSTSNAALGNF-------SVCSNLTNLRSLWLEKVSISQ-- 632 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~---~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~-------~~l~~l~~L~~L~L~~~~i~~-- 632 (830)
+++++.|.+..+.... ..++..+.++++|++|++.++.........+ ..+.++++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3455555554443211 1234446678889999887764322111111 123677889999999988875
Q ss_pred ---cCCCccccCCCceEEeeeccccccccccccCcCCCC---------Cccceecccccccc-Cccc---cccCCCCCCC
Q 003321 633 ---LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL---------PCLTELTFDHCDDL-MKLP---PSICGLQSLK 696 (830)
Q Consensus 633 ---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~lp---~~i~~l~~L~ 696 (830)
+|..+..+++|++|++++|.+.......+......+ ++|++|++++|... ..+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 677788888999999988876532222222211223 78999999888543 2344 4567788999
Q ss_pred EEEeeCcCCCC-----ccchhcCCCCCCCEEEcccCCCC----CccchhhcCCCCCcEeccccccccCc----chhhh--
Q 003321 697 NLSVTNCHSLQ-----ELPADIGKMKSLQILRLYACPHL----RTLPARICELVCLKYLNISQCVSLSC----LPQGI-- 761 (830)
Q Consensus 697 ~L~L~~c~~l~-----~lp~~i~~l~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~L~~c~~l~~----lp~~l-- 761 (830)
+|++++|.... ..|..+..+++|+.|+|++|... ..+|..+..+++|++|+|++|..... +|..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999886331 23337788889999999887643 56788888889999999988764332 46666
Q ss_pred ccCCCCcEEeccCccCCc----cCCccc-cccccCceeecCchh
Q 003321 762 GNLIRLEKIDMRECSQIW----SLPKSV-NSLKSLRQVICEEDV 800 (830)
Q Consensus 762 ~~l~~L~~L~l~~~~~l~----~lp~~~-~~l~~L~~l~~~~~~ 800 (830)
+.+++|+.|+|++|.... .+|..+ .++++|+.|++++|.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 348899999999988443 377777 568889999887763
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3.9e-15 Score=150.97 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=152.6
Q ss_pred cccCeeeecccccCccCC-CccccCCCceEEeeecc-ccccccccccCcCCCCCccceeccccccccCccc-cccCCCCC
Q 003321 618 TNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCK-INNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQS 694 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~ 694 (830)
++|++|++++|.+..+|. .+..+++|++|++++|. +....+.. ...+++|++|++++|..+..+| ..+.++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 489999999999999887 57889999999999986 54332222 2458899999999955677776 46789999
Q ss_pred CCEEEeeCcCCCCccchhcCCCCCCC---EEEcccCCCCCccch-hhcCCCCCc-EeccccccccCcchhhhccCCCCcE
Q 003321 695 LKNLSVTNCHSLQELPADIGKMKSLQ---ILRLYACPHLRTLPA-RICELVCLK-YLNISQCVSLSCLPQGIGNLIRLEK 769 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~lp~-~~~~l~~L~-~L~L~~c~~l~~lp~~l~~l~~L~~ 769 (830)
|++|++++|. +..+|. ++.+++|+ .|++++|..+..+|. .+..+++|+ +|++++| .+..+|......++|+.
T Consensus 107 L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEE
T ss_pred CCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCE
Confidence 9999999986 566886 88888888 999999867777775 488999999 9999985 55688876555589999
Q ss_pred EeccCccCCccCC-cccccc-ccCceeecCchhhhhHHHHhhhCCCceeeecccccc
Q 003321 770 IDMRECSQIWSLP-KSVNSL-KSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFS 824 (830)
Q Consensus 770 L~l~~~~~l~~lp-~~~~~l-~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~ 824 (830)
|++++|..+..+| ..+..+ ++|+.|+++++....... ..+++|+......+.+
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--TTCTTCSEEECTTC--
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--hHhccCceeeccCccC
Confidence 9999996466665 567888 999999998873322111 1466666655555443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=156.07 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=134.8
Q ss_pred hcccCceEEEccccCCccccCCCCCC--CCccccCeeeecccccCccC-----CCccccCCCceEEeeeccccccccccc
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVC--SNLTNLRSLWLEKVSISQLP-----KSSIPLKKMQKISFVLCKINNSLDQSV 661 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l--~~l~~L~~L~L~~~~i~~lp-----~~~~~l~~L~~L~l~~~~~~~~~~~~~ 661 (830)
.+++|++|++.++........ .+ .++++|++|++++|.+.... ..+..+++|++|++++|.+....+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~- 164 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPP---LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ- 164 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCC---CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-
T ss_pred ccCceeEEEeeCCEeccchhh---hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-
Confidence 456688888877764432222 23 67888888888888877422 22345788888888887765433322
Q ss_pred cCcCCCCCccceeccccccccCc--cc--cccCCCCCCCEEEeeCcCCCCccch----hcCCCCCCCEEEcccCCCCCcc
Q 003321 662 VDLPKTLPCLTELTFDHCDDLMK--LP--PSICGLQSLKNLSVTNCHSLQELPA----DIGKMKSLQILRLYACPHLRTL 733 (830)
Q Consensus 662 ~~~~~~~~~L~~L~l~~~~~l~~--lp--~~i~~l~~L~~L~L~~c~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~l 733 (830)
...+++|++|++++|...+. ++ ..++.+++|++|++++|. ++.++. .++.+++|++|++++|......
T Consensus 165 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 165 ---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp ---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred ---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 24577888888888754321 32 234678888888888875 455443 2467788888888887665555
Q ss_pred chhhcCC---CCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 734 PARICEL---VCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 734 p~~~~~l---~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|..+..+ ++|++|+|++| .++.+|..+. ++|+.|++++|. +..+|. +..+++|+.|++++|
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSST
T ss_pred hhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCC
Confidence 7666666 58888888875 4557777664 788888888887 566664 667788888888776
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.7e-14 Score=145.85 Aligned_cols=151 Identities=22% Similarity=0.300 Sum_probs=92.0
Q ss_pred cccCeeeecccccCccCC-CccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCC
Q 003321 618 TNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSL 695 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L 695 (830)
++|+.|++++|.+..++. .+..+++|++|++++|.+....+.. ...+++|++|++++|. +..+| ..+..+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQ-LASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCc-ccccChhHhcccCCC
Confidence 467777777777776554 4666777777777766655432222 2346677777777764 33333 445667777
Q ss_pred CEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccccccccCcchh-hhccCCCCcEEec
Q 003321 696 KNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDM 772 (830)
Q Consensus 696 ~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l 772 (830)
++|+|++|. +..+|. .+..+++|+.|++++|. +..+|. .++.+++|++|+|++|. +..+|. .+..+++|+.|++
T Consensus 110 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 110 DKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 777777764 444443 34667777777777653 334443 46667777777777643 334433 4666777777777
Q ss_pred cCcc
Q 003321 773 RECS 776 (830)
Q Consensus 773 ~~~~ 776 (830)
++|+
T Consensus 187 ~~N~ 190 (251)
T 3m19_A 187 FGNQ 190 (251)
T ss_dssp CSCC
T ss_pred eCCc
Confidence 7766
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=2e-16 Score=173.12 Aligned_cols=243 Identities=10% Similarity=0.110 Sum_probs=176.8
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCC-CCCCCccccCeeeecccccCc----cCCCc-------cccCCCceEE
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQ----LPKSS-------IPLKKMQKIS 647 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~----lp~~~-------~~l~~L~~L~ 647 (830)
...++..+..+++|++|++.++.........+ ..+.++++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 44677889999999999999886544322221 246788999999999986653 34433 6789999999
Q ss_pred eeeccccccccccccCcCCCCCccceeccccccccC----ccccccCCC---------CCCCEEEeeCcCCC-Cccc---
Q 003321 648 FVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGL---------QSLKNLSVTNCHSL-QELP--- 710 (830)
Q Consensus 648 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~i~~l---------~~L~~L~L~~c~~l-~~lp--- 710 (830)
+++|.+.......++.....+++|++|+|++|.... .++..+..+ ++|++|++++|... ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 999987653222223333458999999999996422 233444445 89999999998754 3444
Q ss_pred hhcCCCCCCCEEEcccCCCCC-----ccchhhcCCCCCcEecccccccc----CcchhhhccCCCCcEEeccCccCCcc-
Q 003321 711 ADIGKMKSLQILRLYACPHLR-----TLPARICELVCLKYLNISQCVSL----SCLPQGIGNLIRLEKIDMRECSQIWS- 780 (830)
Q Consensus 711 ~~i~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~L~~c~~l----~~lp~~l~~l~~L~~L~l~~~~~l~~- 780 (830)
..+..+++|++|++++|.... .+|..+..+++|++|+|++|... ..+|..+..+++|+.|+|++|.....
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 567789999999999985432 23447889999999999997642 66888899999999999999984433
Q ss_pred ---CCcccc--ccccCceeecCchhhhh-----HHH-HhhhCCCceeeecccc
Q 003321 781 ---LPKSVN--SLKSLRQVICEEDVSWA-----WKD-LEKTLPNLHVQVPAKC 822 (830)
Q Consensus 781 ---lp~~~~--~l~~L~~l~~~~~~~~~-----~~~-l~~~lp~L~~~~~~~~ 822 (830)
+|..+. .+++|+.|++++|.... ... +...+|+|+......|
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 466663 48999999998875443 333 3356899988876654
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.8e-14 Score=141.10 Aligned_cols=151 Identities=13% Similarity=0.231 Sum_probs=76.4
Q ss_pred CCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCC
Q 003321 615 SNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 694 (830)
Q Consensus 615 ~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~ 694 (830)
..+++|++|++++|.+..+| .+..+++|++|++++|.+. .+ +.+..+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-----------------------------~~-~~l~~l~~ 89 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-----------------------------NY-NPISGLSN 89 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-----------------------------CC-GGGTTCTT
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-----------------------------cc-hhhhcCCC
Confidence 45667777777777777766 5666666666666655221 11 13444444
Q ss_pred CCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccC
Q 003321 695 LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRE 774 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 774 (830)
|++|++++|......|..++.+++|++|++++|......|..++.+++|++|++++|..+..+| .+..+++|+.|++++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC
Confidence 5555554444333334444445555555555444333344444555555555555544344444 344555555555555
Q ss_pred ccCCccCCccccccccCceeecCch
Q 003321 775 CSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 775 ~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|. +..++ .+..+++|+.|++++|
T Consensus 169 n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 169 DG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred CC-CcChH-HhccCCCCCEEEeeCc
Confidence 54 33343 4444555555555444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=159.86 Aligned_cols=224 Identities=15% Similarity=0.088 Sum_probs=159.7
Q ss_pred cccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCCCc--cccCCCceEEeeeccccccccccccCcCC
Q 003321 590 MEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSS--IPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 590 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
...++.|.+.++.........+.....+++|++|++++|.+. ..|..+ ..+++|++|++++|.+....+........
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345677777665443222111111224567999999999988 566666 88999999999999877533311111112
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCc--cc--hhcCCCCCCCEEEcccCCCCCccchh----hc
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE--LP--ADIGKMKSLQILRLYACPHLRTLPAR----IC 738 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~--lp--~~i~~l~~L~~L~l~~~~~l~~lp~~----~~ 738 (830)
.+++|++|++++|......|..++.+++|++|++++|..... ++ ..++.+++|++|++++|. +..+|.. ++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHh
Confidence 588999999999976555567899999999999999875432 33 234789999999999975 4555552 57
Q ss_pred CCCCCcEeccccccccCcchhhhccC---CCCcEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCce
Q 003321 739 ELVCLKYLNISQCVSLSCLPQGIGNL---IRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLH 815 (830)
Q Consensus 739 ~l~~L~~L~L~~c~~l~~lp~~l~~l---~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~ 815 (830)
.+++|++|+|++|......|..+..+ ++|++|++++|. +..+|..+. ++|+.|++++|....+.. ...+|+|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 88999999999976555557777776 699999999998 668998775 799999999884443322 34556665
Q ss_pred eee
Q 003321 816 VQV 818 (830)
Q Consensus 816 ~~~ 818 (830)
...
T Consensus 298 ~L~ 300 (310)
T 4glp_A 298 NLT 300 (310)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=5.5e-14 Score=161.28 Aligned_cols=236 Identities=21% Similarity=0.180 Sum_probs=157.9
Q ss_pred ceEEEeeeCCcccccccccCCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeee
Q 003321 545 AQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLW 624 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 624 (830)
.+.+.+....+..+... -.++++.|.+..+. ...+|. .+++|++|++.++.... ++. .+++|++|+
T Consensus 42 l~~L~ls~n~L~~lp~~--l~~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~--~l~~L~~L~ 107 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDC--LPAHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTS-----LPV--LPPGLLELS 107 (622)
T ss_dssp CCEEECCSSCCSCCCSC--CCTTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSC-----CCC--CCTTCCEEE
T ss_pred CcEEEecCCCcCccChh--hCCCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCc-----CCC--CCCCCCEEE
Confidence 45677766666654421 22678888776654 446666 57899999998876432 222 678999999
Q ss_pred ecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCC-------------
Q 003321 625 LEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG------------- 691 (830)
Q Consensus 625 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~------------- 691 (830)
+++|.+..+|. .+.+|++|++++|.+.. + +..+++|++|++++| .+..+|..+.+
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-l-------p~~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQLTS-L-------PVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSCCSC-C-------CCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCCCCc-C-------CCCCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCC
Confidence 99999999987 56889999999887653 1 223578888888887 35555543222
Q ss_pred ----CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCC
Q 003321 692 ----LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRL 767 (830)
Q Consensus 692 ----l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L 767 (830)
+++|++|++++|. +..+|. .+++|+.|++++| .+..+|. .+++|++|++++| .++.+| ..+++|
T Consensus 176 l~~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp---~~l~~L 243 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP---VLPSEL 243 (622)
T ss_dssp CCCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC---CCCTTC
T ss_pred CcccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC---CCCCcC
Confidence 1556666666554 344443 2356666666654 3444553 2477888888875 566677 466889
Q ss_pred cEEeccCccCCccCCccccccccCceeecCchhhhhHHHHhhhCCCceeeecccc
Q 003321 768 EKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 768 ~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp~L~~~~~~~~ 822 (830)
+.|++++|. +..+|. .+++|+.|++++|.....+.....+|+|+.....++
T Consensus 244 ~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 244 KELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred cEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence 999999987 677886 567888998887744443333457777777655443
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=3.9e-14 Score=147.90 Aligned_cols=175 Identities=17% Similarity=0.271 Sum_probs=139.1
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
+..+++|++|++.++... .++.+..+++|++|++++|.+..++. +..+++|++|++++|.+... + ...
T Consensus 42 ~~~l~~L~~L~l~~~~i~-----~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~-----~l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-S-----SLK 109 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-----CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG-G-----GGT
T ss_pred hhhcCcccEEEccCCCcc-----cChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC-h-----hhc
Confidence 567889999998876543 23457788999999999999998887 88899999999998876542 1 135
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|++|++++|. +..++ .++.+++|++|++++|. +..+ ..++.+++|+.|++++|. +..++. +..+++|++|
T Consensus 110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEE
Confidence 68899999999984 55564 58899999999999986 5555 578899999999999975 455555 8899999999
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCccCCccCC
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 782 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 782 (830)
++++| .++.+|. +..+++|+.|++++|+ +...|
T Consensus 184 ~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 184 YLSKN-HISDLRA-LAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp ECCSS-CCCBCGG-GTTCTTCSEEEEEEEE-EECCC
T ss_pred ECCCC-cCCCChh-hccCCCCCEEECcCCc-ccCCc
Confidence 99986 5677764 8899999999999998 44344
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=4.4e-14 Score=147.54 Aligned_cols=170 Identities=17% Similarity=0.216 Sum_probs=142.7
Q ss_pred CCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCC
Q 003321 613 VCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 692 (830)
Q Consensus 613 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l 692 (830)
.+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+ ...+++|+.|++++|. +..+|. ++.+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 3557899999999999999986 48889999999999998765332 3568999999999985 666654 9999
Q ss_pred CCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEec
Q 003321 693 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 772 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 772 (830)
++|++|++++|. +..++ .+..+++|+.|++++|. +..+ ..++.+++|++|++++| .+..++. +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEEC
Confidence 999999999986 55554 68899999999999975 4455 56899999999999996 5666665 999999999999
Q ss_pred cCccCCccCCccccccccCceeecCch
Q 003321 773 RECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 773 ~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
++|. +..+|. +..+++|+.|++++|
T Consensus 186 ~~N~-i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 186 SKNH-ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSSC-CCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCc-CCCChh-hccCCCCCEEECcCC
Confidence 9998 777874 888999999998876
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=2e-13 Score=150.75 Aligned_cols=281 Identities=11% Similarity=-0.003 Sum_probs=172.1
Q ss_pred ccccccchhhHHHHHHH-hc---C--CCceEEEE--EcCCCChHHHHHHHHhcccccc---cccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMV-IG---R--DDLSVLGI--CGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L-~~---~--~~~~vi~I--~G~~GiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~ 251 (830)
..++||+.+.+++.+++ .. . ...+.+.| +|++|+||||||+.+++..... ..|...++|++.....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999988 42 2 24556666 9999999999999999642211 1234445677776777888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCCh--------HhHHHhh---hcCC--C--c--e
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSL--------AVLEQLI---FRVP--G--C--K 312 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~--------~~~~~l~---~~~~--g--s--~ 312 (830)
.++..++..+.....................+ .+++++|||||++.. +.+..+. ...+ + + .
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 99999998885432111111111122222223 378999999999863 3333322 1222 3 4 4
Q ss_pred EEEEecccccc------------cccceEEccCCCHHHHHHHHHHH---hcCCCCCCCchhHHHHHHHHHHcC------C
Q 003321 313 TLVVSRFKFST------------VLNDTYEVELLREDESLSLFCYS---AFGQKTIPPSANENLVKQIVKKCK------G 371 (830)
Q Consensus 313 iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~Lf~~~---af~~~~~~~~~~~~~~~~i~~~c~------G 371 (830)
+|+||+..... .....+++++++.++.+++|... ++... ...++....|++.|+ |
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT----VWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT----SCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC----CCChHHHHHHHHHHHHhccCCC
Confidence 77788754311 11223899999999999999754 33321 123457889999999 9
Q ss_pred chHHHHHHHHHh-c-----CC---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCCC--CC
Q 003321 372 LPLALKVIGASL-R-----EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFP--ED 440 (830)
Q Consensus 372 lPLai~~~~~~L-~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~ 440 (830)
.|..+..+.... . +. +...+..+...... ...+.-++..||++.+.++..++.+. .+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 997655444321 1 11 12223333222100 22344467889999999998888754 33
Q ss_pred CccCHHHHHHHHHH----hcC---CCHHHHHHHHHHHhhhhhHHHH
Q 003321 441 KKIPLEVLINMWVE----IHD---LDEEEAFAILVELSDRNLLKIV 479 (830)
Q Consensus 441 ~~i~~~~Li~~Wia----~~~---~~~~~~~~~l~~L~~r~l~~~~ 479 (830)
..++...+...+.. ..+ ........+++.|.+.+++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 45666666555432 112 3456778899999999998754
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=7.1e-14 Score=160.19 Aligned_cols=172 Identities=17% Similarity=0.258 Sum_probs=135.8
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
+..+++|+.|++.++... .++.+..+++|+.|+|++|.+..+|. +..+++|+.|+|++|.+... + ...
T Consensus 39 ~~~L~~L~~L~l~~n~i~-----~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-----~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-S-----SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-----CCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC-T-----TST
T ss_pred hhcCCCCCEEECcCCCCC-----CChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC-h-----hhc
Confidence 567888999888776532 33457788999999999999998887 88899999999998876541 1 235
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|+.|+|++|. +..+| .+..|++|+.|+|++|. +..+ ..++.+++|+.|+|++|... .+++ +..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCC-CCGG-GTTCTTCCEE
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCC-Cchh-hccCCCCCEE
Confidence 68899999999985 55554 58899999999999986 4555 57889999999999987644 4444 8899999999
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCccCC
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECSQI 778 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 778 (830)
+|++| .+..+| .+..+++|+.|+|++|+..
T Consensus 181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 181 YLSKN-HISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSS-CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred ECcCC-CCCCCh-HHccCCCCCEEEccCCcCc
Confidence 99986 556665 5889999999999999843
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=5.3e-13 Score=143.69 Aligned_cols=267 Identities=13% Similarity=0.065 Sum_probs=163.5
Q ss_pred CcccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC------CHHHHH
Q 003321 181 GNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP------NVEQLR 254 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~------~~~~l~ 254 (830)
....++||+.+.+++.+++.. + +++.|+|++|+|||||++++++.. . ++|+++.... +...+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~--~-~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN--Y-PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH--C-SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc--C-CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHH
Confidence 345689999999999998864 2 799999999999999999998542 1 4577765432 455666
Q ss_pred HHHHHhhcCC----------C---CCCCCCCcccchHHHHhh----c-CCcEEEEEeCCCChH---------hHHHhh--
Q 003321 255 AKVWGFVSGC----------D---SMEPNYVIPHWNLQIQSK----L-GSRCLVVLDDVWSLA---------VLEQLI-- 305 (830)
Q Consensus 255 ~~i~~~l~~~----------~---~~~~~~~~~~~~~~~~~l----~-~kr~LlVlDdv~~~~---------~~~~l~-- 305 (830)
..+...+... . ..........+......+ . .++++|||||++... .+..+.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6665544320 0 000000011122222222 1 238999999998643 223232
Q ss_pred -hcCCCceEEEEeccccc--------c-------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHc
Q 003321 306 -FRVPGCKTLVVSRFKFS--------T-------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKC 369 (830)
Q Consensus 306 -~~~~gs~iivTtr~~~~--------~-------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c 369 (830)
...++.++|+|++.... . .....+++.+|+.+|+.+++.... +..... ..++.+..|++.|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~--~~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD--VPENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC--CCHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC--CCHHHHHHHHHHh
Confidence 23468899999875421 0 112478999999999999997653 211111 1245788999999
Q ss_pred CCchHHHHHHHHHhcC-CChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcC---ChhHHHHHhhhCCCCCCCccCH
Q 003321 370 KGLPLALKVIGASLRE-QPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYL---PKKVKECFLDLGSFPEDKKIPL 445 (830)
Q Consensus 370 ~GlPLai~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~a~fp~~~~i~~ 445 (830)
+|+|+++..++..+.. .+...+ ...+. ..+...+.-.+..+ ++..+..+..+|. + .++.
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~ 298 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRA---MKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRW 298 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHH---HHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSH
T ss_pred CCCHHHHHHHHHHHhccccHhHH---HHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCH
Confidence 9999999999876532 222211 11110 11111111112222 7889999999987 2 2455
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHhhhhhHHH
Q 003321 446 EVLINMWVEIH-DLDEEEAFAILVELSDRNLLKI 478 (830)
Q Consensus 446 ~~Li~~Wia~~-~~~~~~~~~~l~~L~~r~l~~~ 478 (830)
..+........ +.+......+++.|.+.+++..
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 332 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVE 332 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEe
Confidence 55554432222 5677778899999999999864
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-13 Score=134.76 Aligned_cols=153 Identities=15% Similarity=0.202 Sum_probs=117.7
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
...+++|++|++.++... .++.+..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus 40 ~~~l~~L~~L~l~~n~i~-----~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-------------- 99 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-------------- 99 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-----CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT--------------
T ss_pred hhhcCCccEEeccCCCcc-----ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc--------------
Confidence 478899999999887543 3335778899999999999877665 45556666666665443
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.....|..++.+++|++|++++|......|..++.+++|++|++++|..+..+| .+..+++|++|
T Consensus 100 --------------l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 100 --------------VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp --------------CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred --------------cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 222345667888899999999887665677888899999999999987677777 68889999999
Q ss_pred ccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 747 NISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 747 ~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
++++| .+..++ .+..+++|+.|++++|+
T Consensus 165 ~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 165 NIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 99986 456666 68889999999999987
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=4e-14 Score=157.46 Aligned_cols=157 Identities=24% Similarity=0.281 Sum_probs=86.5
Q ss_pred cccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCE
Q 003321 618 TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKN 697 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 697 (830)
++|++|++++|.+..+|.. +.+|++|++++|.+... +...++|++|++++|. +..+| .++++++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l--------~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL--------SDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC--------CSCCTTCCEEECCSSC-CSSCC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc--------cCCCCCCCEEECcCCC-CCCCc-ccCCCCCCCE
Confidence 4566666666666666543 25566666665544321 1112567777777763 44566 4777777777
Q ss_pred EEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccC
Q 003321 698 LSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 698 L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|++++|. +..+|.. .++|+.|++++|.
T Consensus 158 L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~- 226 (454)
T 1jl5_A 158 IDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNI- 226 (454)
T ss_dssp EECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSC-
T ss_pred EECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCc-
Confidence 7777764 44455432 466666666653 33455 46666666666666642 3334332 1355555555554
Q ss_pred CccCCccccccccCceeecCch
Q 003321 778 IWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 778 l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
+..+|. ++.+++|+.|++++|
T Consensus 227 l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 227 LEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CSSCCC-CTTCTTCCEEECCSS
T ss_pred CCcccc-cCCCCCCCEEECCCC
Confidence 334552 455555555555444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=3.8e-13 Score=137.30 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCCccccCeeeecccccCccCCC-ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccc-cCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPS-ICG 691 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-i~~ 691 (830)
+.++++|++|+|++|.+..++.. +..+++|++|++++|.+....+ .....+++|++|++++|. +..+|.. +..
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 129 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR 129 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCCc-CCCcChhHhcc
Confidence 34444555555555544443332 3444455555554444332111 111234445555554442 3333322 344
Q ss_pred CCCCCEEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccc
Q 003321 692 LQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 751 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 751 (830)
+++|++|+|++|. +..+|. .++.+++|++|++++|......|..+..+++|++|+|++|
T Consensus 130 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 130 LTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 4555555555443 233332 3444455555555444322222223444455555555443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.9e-13 Score=154.85 Aligned_cols=148 Identities=22% Similarity=0.219 Sum_probs=68.4
Q ss_pred ccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCC
Q 003321 617 LTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLK 696 (830)
Q Consensus 617 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 696 (830)
+++|++|++++|.+..+|. +.. +|++|++++|.+.. ++. .+++|+.|++++|. +..+|. .+++|+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~-l~~lp~---~l~~L~ 163 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE-------LPALLEYINADNNQ-LTMLPE---LPTSLE 163 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSC-CSCCCC---CCTTCC
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC-------cCccccEEeCCCCc-cCcCCC---cCCCcC
Confidence 4455555555555555554 332 55555555544432 111 24455555555542 333443 344555
Q ss_pred EEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCC-------cEeccccccccCcchhhhccCCCCcE
Q 003321 697 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCL-------KYLNISQCVSLSCLPQGIGNLIRLEK 769 (830)
Q Consensus 697 ~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L-------~~L~L~~c~~l~~lp~~l~~l~~L~~ 769 (830)
+|+|++|. +..+|. ++ ++|+.|++++| .+..+|. +.. +| +.|+|++| .++.+|..+..+++|+.
T Consensus 164 ~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 164 VLSVRNNQ-LTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCT 234 (571)
T ss_dssp EEECCSSC-CSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEE
T ss_pred EEECCCCC-CCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCE
Confidence 55555543 333444 33 45555555553 2334444 322 34 55555543 34445555555555555
Q ss_pred EeccCccCCccCCcccccc
Q 003321 770 IDMRECSQIWSLPKSVNSL 788 (830)
Q Consensus 770 L~l~~~~~l~~lp~~~~~l 788 (830)
|+|++|+..+.+|..+..+
T Consensus 235 L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EECCSSSCCHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHh
Confidence 5555555444444444443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=9.1e-14 Score=157.43 Aligned_cols=175 Identities=22% Similarity=0.265 Sum_probs=118.0
Q ss_pred cCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCcc
Q 003321 592 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCL 671 (830)
Q Consensus 592 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 671 (830)
+|++|++.++...... ..+ +++|++|+|++|.+..+| ..+++|++|++++|.+.. ++. + ..+|
T Consensus 60 ~L~~L~Ls~n~L~~lp----~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l------~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP----DNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-L------PASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCC----SCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-C------CTTC
T ss_pred CccEEEeCCCCCCccC----HhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-h------hcCC
Confidence 7777777766543211 112 267888888888888777 346788888888776654 222 1 1278
Q ss_pred ceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccc
Q 003321 672 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 751 (830)
Q Consensus 672 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 751 (830)
++|++++|. +..+|. .+++|++|++++|. ++.+|. .+++|+.|++++|. +..+|. +. ++|++|+|++|
T Consensus 123 ~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCC
Confidence 888888774 555776 57788888888765 455665 56788888888764 445776 54 78888888875
Q ss_pred cccCcchhhhccCCCC-------cEEeccCccCCccCCccccccccCceeecCchh
Q 003321 752 VSLSCLPQGIGNLIRL-------EKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 752 ~~l~~lp~~l~~l~~L-------~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
.++.+|. +.. +| +.|++++|. +..+|..+.++++|+.|++++|.
T Consensus 191 -~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 -LLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred -CCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 5567776 543 66 888888877 66788777778888888877663
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=1.2e-13 Score=158.33 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=143.2
Q ss_pred CCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCC
Q 003321 613 VCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 692 (830)
Q Consensus 613 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l 692 (830)
.+..|++|+.|++++|.+..+| .+..+++|+.|+|++|.+....+ ...+++|+.|+|++|. +..+| .++.+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~-l~~l~-~l~~l 108 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENK-IKDLS-SLKDL 108 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSC-CCCCT-TSTTC
T ss_pred chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCC-CCCCh-hhccC
Confidence 3567889999999999999987 58889999999999998765333 3468999999999984 66666 69999
Q ss_pred CCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEec
Q 003321 693 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDM 772 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l 772 (830)
++|++|+|++|. +..++ .+..+++|+.|+|++|. +..+ ..++.+++|+.|+|++|. +..++. +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred CCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEEC
Confidence 999999999987 55554 68899999999999975 4455 578999999999999964 555655 999999999999
Q ss_pred cCccCCccCCccccccccCceeecCchh
Q 003321 773 RECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 773 ~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
++|. +..+| .+..+++|+.|++++|.
T Consensus 183 s~N~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKNH-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSSC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred cCCC-CCCCh-HHccCCCCCEEEccCCc
Confidence 9998 66776 58889999999988773
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=2e-12 Score=139.61 Aligned_cols=267 Identities=10% Similarity=0.050 Sum_probs=159.9
Q ss_pred CcccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC-----CCHHHHHH
Q 003321 181 GNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-----PNVEQLRA 255 (830)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-----~~~~~l~~ 255 (830)
....++||+.+.+.+.+ +.. +++.|+|++|+|||||++++++. ... .++|+++... .+...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINE--LNL----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHH--HTC----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEchhhccccCCCHHHHHH
Confidence 34568999999999999 642 69999999999999999999854 221 2458887643 34444444
Q ss_pred HHHHhhc-------------CCC-C---CCCC-C------CcccchHHHHhhc--C-CcEEEEEeCCCChH-----h---
Q 003321 256 KVWGFVS-------------GCD-S---MEPN-Y------VIPHWNLQIQSKL--G-SRCLVVLDDVWSLA-----V--- 300 (830)
Q Consensus 256 ~i~~~l~-------------~~~-~---~~~~-~------~~~~~~~~~~~l~--~-kr~LlVlDdv~~~~-----~--- 300 (830)
.+.+.+. ... . .... . ....+....+.+. . ++++|||||++... .
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 4433321 000 0 0000 0 0112223333331 1 49999999997632 1
Q ss_pred -HHHhhhcCCCceEEEEeccccc--------c------cc-cceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHH
Q 003321 301 -LEQLIFRVPGCKTLVVSRFKFS--------T------VL-NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQ 364 (830)
Q Consensus 301 -~~~l~~~~~gs~iivTtr~~~~--------~------~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~ 364 (830)
+..+....++.++|+|++.... . .. ...+++.+|+.+|+.+++....-........ . ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~-~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y-EV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H-HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H-HH
Confidence 2222233467899999986531 0 11 2578999999999999998743111111111 2 78
Q ss_pred HHHHcCCchHHHHHHHHHhcC-CChHHHHH-HHHHhccCCCCcccchhhHHHHHH-HhHh--cCChhHHHHHhhhCCCCC
Q 003321 365 IVKKCKGLPLALKVIGASLRE-QPEMYWTS-AKKRLSKGEPICESHENNLLDRMA-ISIQ--YLPKKVKECFLDLGSFPE 439 (830)
Q Consensus 365 i~~~c~GlPLai~~~~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl~~a~fp~ 439 (830)
|++.|+|+|+++..++..+.. .+...|.. +.+.. ...+...+. +.++ .||+..+..+..+|+
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----------KKLILKEFENFLHGREIARKRYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----------HHHHHHHHHHHhhccccccHHHHHHHHHHHc---
Confidence 999999999999999887643 22222311 11100 011222222 2221 688999999999998
Q ss_pred CCccCHHHHHHHHHHhcC--CCHHHHHHHHHHHhhhhhHHH
Q 003321 440 DKKIPLEVLINMWVEIHD--LDEEEAFAILVELSDRNLLKI 478 (830)
Q Consensus 440 ~~~i~~~~Li~~Wia~~~--~~~~~~~~~l~~L~~r~l~~~ 478 (830)
+. +...+....-+..+ ++......+++.|.+.+++..
T Consensus 302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEe
Confidence 22 44555432211223 667778899999999999864
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=4.8e-13 Score=143.82 Aligned_cols=221 Identities=17% Similarity=0.125 Sum_probs=164.5
Q ss_pred CceEEEEeeCccCcccccCh-hhhhcccCceEEEccccCCccccCCCCCCCCccccCe-eeecccccCccC-CCccccCC
Q 003321 566 PKAEVLILNFSSTEEYFLPP-FIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRS-LWLEKVSISQLP-KSSIPLKK 642 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~-~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~-L~L~~~~i~~lp-~~~~~l~~ 642 (830)
++++.|.+..+. ...+|. .|.++++|++|++.++....... ...|.++++|.. +.+.+|.+..++ ..+..+++
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 355666655443 456664 58999999999998876432221 134667887765 566778898885 45778999
Q ss_pred CceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCC-CCCCEEEeeCcCCCCccchhcCCCCCCC
Q 003321 643 MQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGL-QSLKNLSVTNCHSLQELPADIGKMKSLQ 720 (830)
Q Consensus 643 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l-~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 720 (830)
|++|++++|.+....+... ....++..|++.++..+..+|. .+..+ ..|++|++++|. ++.+|..+....+|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~----~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHK----IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCEEEEEEECCSSCCCCTT----CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEE
T ss_pred cccccccccccccCCchhh----cccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchh
Confidence 9999999988765433322 2245677888888777877775 34555 468899999865 778888777888999
Q ss_pred EEEcccCCCCCccchh-hcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCch
Q 003321 721 ILRLYACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 721 ~L~l~~~~~l~~lp~~-~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
.|.+.+|+.++.+|.. +..+++|++|+|++| .++.+|.. .+.+|+.|.+.+|..++.+| .+.++++|+.+++..+
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 9999988889999864 688999999999985 68888863 46788888888888899999 4788899998887654
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=6.3e-15 Score=165.39 Aligned_cols=235 Identities=16% Similarity=0.157 Sum_probs=130.1
Q ss_pred CCCceEEEEeeCccCccc---ccChhhhhcccCceEEEccccCCccccCCC-CCCCCc-cccCeeeecccccC-----cc
Q 003321 564 EFPKAEVLILNFSSTEEY---FLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNL-TNLRSLWLEKVSIS-----QL 633 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~---~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l-~~L~~L~L~~~~i~-----~l 633 (830)
.+++++.|.+..+..... .+|..+..+++|++|++.++.........+ ..+... ++|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 456677777766553221 456667777888888887765432211111 111111 16888888888776 35
Q ss_pred CCCccccCCCceEEeeeccccccccccccC-cCCCCCccceeccccccccC----ccccccCCCCCCCEEEeeCcCCCCc
Q 003321 634 PKSSIPLKKMQKISFVLCKINNSLDQSVVD-LPKTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQE 708 (830)
Q Consensus 634 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~----~lp~~i~~l~~L~~L~L~~c~~l~~ 708 (830)
|..+..+++|++|++++|.+.......+.. +....++|++|++++|.... .++..+..+++|++|++++|.....
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 666777788888888877654322221111 12234567777777774322 2345556667777777777653222
Q ss_pred cchhcC-----CCCCCCEEEcccCCCCCc----cchhhcCCCCCcEeccccccccCc----chhh-hccCCCCcEEeccC
Q 003321 709 LPADIG-----KMKSLQILRLYACPHLRT----LPARICELVCLKYLNISQCVSLSC----LPQG-IGNLIRLEKIDMRE 774 (830)
Q Consensus 709 lp~~i~-----~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~L~~c~~l~~----lp~~-l~~l~~L~~L~l~~ 774 (830)
.+..+. .+++|++|++++|..... ++..+..+++|++|++++|..... ++.. ...+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 222221 245677777776644332 455566666777777766532111 1111 22456666666666
Q ss_pred ccCCcc-----CCccccccccCceeecCch
Q 003321 775 CSQIWS-----LPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 775 ~~~l~~-----lp~~~~~l~~L~~l~~~~~ 799 (830)
|. +.. +|..+..+++|+.|++++|
T Consensus 266 n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 266 CG-ITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp SC-CCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CC-CCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 65 333 4555555666666666555
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=1.1e-12 Score=145.89 Aligned_cols=219 Identities=22% Similarity=0.225 Sum_probs=108.5
Q ss_pred ceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceE
Q 003321 567 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKI 646 (830)
Q Consensus 567 ~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 646 (830)
+++.|.+..+. ...+| .++++++|++|++.++.... ++. ..++|++|++++|.+..+|. +..+++|++|
T Consensus 174 ~L~~L~L~~n~--l~~l~-~~~~l~~L~~L~l~~N~l~~-----l~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L 242 (454)
T 1jl5_A 174 SLEFIAAGNNQ--LEELP-ELQNLPFLTAIYADNNSLKK-----LPD--LPLSLESIVAGNNILEELPE-LQNLPFLTTI 242 (454)
T ss_dssp TCCEEECCSSC--CSSCC-CCTTCTTCCEEECCSSCCSS-----CCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEE
T ss_pred cccEEECcCCc--CCcCc-cccCCCCCCEEECCCCcCCc-----CCC--CcCcccEEECcCCcCCcccc-cCCCCCCCEE
Confidence 44444444332 23344 36666677777666554321 110 12356666666666666663 5666666777
Q ss_pred EeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc---hh-----------
Q 003321 647 SFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP---AD----------- 712 (830)
Q Consensus 647 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp---~~----------- 712 (830)
++++|.+.. ++ ..+++|+.|++++|. +..+|.. +++|++|++++|. +..+| ..
T Consensus 243 ~l~~N~l~~-l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 243 YADNNLLKT-LP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp ECCSSCCSS-CC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCC
T ss_pred ECCCCcCCc-cc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcC
Confidence 666665442 11 123455555555553 3334432 2444555554443 22111 11
Q ss_pred --cCCC-CCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCc--cCCccccc
Q 003321 713 --IGKM-KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW--SLPKSVNS 787 (830)
Q Consensus 713 --i~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~~~ 787 (830)
+..+ ++|+.|++++|. +..+|.. +++|++|++++| .+..+|. .+++|++|++++|.... .+|..+.+
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp SEECCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred CcccCCcCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 1223 478888888754 4456653 588999999886 5667876 57899999999998655 67888887
Q ss_pred c-------------ccCceeecCchhhhhHHHHhhhCCCceee
Q 003321 788 L-------------KSLRQVICEEDVSWAWKDLEKTLPNLHVQ 817 (830)
Q Consensus 788 l-------------~~L~~l~~~~~~~~~~~~l~~~lp~L~~~ 817 (830)
+ ++|+.|++++|.......+...+.+|++.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~ 424 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMN 424 (454)
T ss_dssp EECCC--------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCccccchhhHhheeCc
Confidence 7 78999988887554433444455555543
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=1.9e-14 Score=161.39 Aligned_cols=256 Identities=14% Similarity=0.090 Sum_probs=169.7
Q ss_pred CceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCC-CCCCCccccCeeeecccccCcc-CCCc-cccC-
Q 003321 566 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQL-PKSS-IPLK- 641 (830)
Q Consensus 566 ~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~l-p~~~-~~l~- 641 (830)
+.++.|++..........+..+..+++|++|++.++.........+ ..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3455666655443233334458899999999999887543221111 2356779999999999988642 2222 2244
Q ss_pred ---CCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc----c-cCCCCCCCEEEeeCcCCCC----cc
Q 003321 642 ---KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP----S-ICGLQSLKNLSVTNCHSLQ----EL 709 (830)
Q Consensus 642 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~----~-i~~l~~L~~L~L~~c~~l~----~l 709 (830)
+|++|++++|.+...-...++.....+++|++|++++|......+. . ....++|++|++++|.... .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999876432223334446688999999999863222222 2 2346789999999986443 34
Q ss_pred chhcCCCCCCCEEEcccCCCCCccchhhc-----CCCCCcEeccccccccC----cchhhhccCCCCcEEeccCccCCcc
Q 003321 710 PADIGKMKSLQILRLYACPHLRTLPARIC-----ELVCLKYLNISQCVSLS----CLPQGIGNLIRLEKIDMRECSQIWS 780 (830)
Q Consensus 710 p~~i~~l~~L~~L~l~~~~~l~~lp~~~~-----~l~~L~~L~L~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~l~~ 780 (830)
+..+..+++|++|++++|......+..+. .+++|++|++++|.... .++..+..+++|++|++++|. +..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CCh
Confidence 66777889999999999874433333332 36799999999975443 267788899999999999997 433
Q ss_pred C------CccccccccCceeecCchhhhh-----HHHHhhhCCCceeeecccc
Q 003321 781 L------PKSVNSLKSLRQVICEEDVSWA-----WKDLEKTLPNLHVQVPAKC 822 (830)
Q Consensus 781 l------p~~~~~l~~L~~l~~~~~~~~~-----~~~l~~~lp~L~~~~~~~~ 822 (830)
. +.....+++|+.|++++|.... .......+|+|+......+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 2 2223357899999998773332 2333446788877655543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=6.9e-13 Score=131.15 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=85.1
Q ss_pred ccCeeeecccccCccCCC-ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCC
Q 003321 619 NLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLK 696 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~ 696 (830)
+|++|++++|.+..+|.. +..+++|++|++++|.+..... .....+++|++|++++|. +..+|. .++.+++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN----GVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh----hhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 444455555444444433 2344455555554444332111 111234555666665553 334443 356677777
Q ss_pred EEEeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccC
Q 003321 697 NLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRE 774 (830)
Q Consensus 697 ~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~ 774 (830)
+|++++|. +..+|. .+..+++|++|++++|... .+|. .+..+++|++|++++|.. .+.+++|+.|+++.
T Consensus 104 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 104 ELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHH
T ss_pred EEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHH
Confidence 77777664 344443 3566777777777765433 3333 356677777777776532 23455667777777
Q ss_pred ccCCccCCcccccccc
Q 003321 775 CSQIWSLPKSVNSLKS 790 (830)
Q Consensus 775 ~~~l~~lp~~~~~l~~ 790 (830)
|...+.+|..++.++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 7666677766666543
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=7.9e-13 Score=142.13 Aligned_cols=223 Identities=16% Similarity=0.112 Sum_probs=159.1
Q ss_pred ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccC-ccCC-CccccCCCceEEe-eecccccc
Q 003321 580 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPK-SSIPLKKMQKISF-VLCKINNS 656 (830)
Q Consensus 580 ~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~-~~~~l~~L~~L~l-~~~~~~~~ 656 (830)
...+|..+ .+++++|++.++....... ..|.++++|++|+|++|.+. .+|. .+..+.+|..+.. ..+.+...
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 44567655 3689999999876543221 34788999999999999975 4665 4677888876544 44544432
Q ss_pred ccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEEeeCcCCCCccch-hcCCC-CCCCEEEcccCCCCCcc
Q 003321 657 LDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPA-DIGKM-KSLQILRLYACPHLRTL 733 (830)
Q Consensus 657 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~l-~~L~~L~l~~~~~l~~l 733 (830)
.+ .....+++|++|++++|. +..+|+ .+....++..|++.++..+..+|. .+..+ ..|+.|++++| .+..+
T Consensus 96 ~~----~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i 169 (350)
T 4ay9_X 96 NP----EAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI 169 (350)
T ss_dssp CT----TSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE
T ss_pred Cc----hhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC
Confidence 22 233568999999999985 555553 455677889999998888888875 34555 46899999985 56788
Q ss_pred chhhcCCCCCcEeccccccccCcchhh-hccCCCCcEEeccCccCCccCCc-cccccccCceeecCchhhhhHHHHhhhC
Q 003321 734 PARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEEDVSWAWKDLEKTL 811 (830)
Q Consensus 734 p~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~~~~~~~~l~~~l 811 (830)
|......++|+.|++++|+.++.+|.. +..+++|+.|++++|. +..+|. .+.+|++|+.+++.+..... -...+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP---~l~~l 245 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP---TLEKL 245 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC---CTTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC---CchhC
Confidence 888778889999999998999999875 7899999999999998 788876 35556666555553321111 12355
Q ss_pred CCceee
Q 003321 812 PNLHVQ 817 (830)
Q Consensus 812 p~L~~~ 817 (830)
++|+..
T Consensus 246 ~~L~~l 251 (350)
T 4ay9_X 246 VALMEA 251 (350)
T ss_dssp CSCCEE
T ss_pred cChhhC
Confidence 666554
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=3.7e-14 Score=153.35 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=135.6
Q ss_pred ceEEEEeeCccCcccccC-----hhhhhcc-cCceEEEccccCCccccCCC-CCCCC-ccccCeeeecccccCccCCC--
Q 003321 567 KAEVLILNFSSTEEYFLP-----PFIENME-KLRALIVINYSTSNAALGNF-SVCSN-LTNLRSLWLEKVSISQLPKS-- 636 (830)
Q Consensus 567 ~~~~l~l~~~~~~~~~lp-----~~i~~l~-~Lr~L~l~~~~~~~~~~~~~-~~l~~-l~~L~~L~L~~~~i~~lp~~-- 636 (830)
+++.|++..+. ....+ ..+.+++ +|++|++.++.........+ ..+.. .++|++|+|++|.+...+..
T Consensus 23 ~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 36666655443 22222 5566777 78888887765433221111 01112 27788888888887744322
Q ss_pred ---cccc-CCCceEEeeeccccccccccccCcCCC-CCccceeccccccccC----ccccccCCCC-CCCEEEeeCcCCC
Q 003321 637 ---SIPL-KKMQKISFVLCKINNSLDQSVVDLPKT-LPCLTELTFDHCDDLM----KLPPSICGLQ-SLKNLSVTNCHSL 706 (830)
Q Consensus 637 ---~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~----~lp~~i~~l~-~L~~L~L~~c~~l 706 (830)
+..+ ++|++|++++|.+.......+...... .++|++|++++|.... .++..+..++ +|++|+|++|...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3333 688888888887655433333222223 2578888888875332 3444555555 8888888887643
Q ss_pred Cccch----hcCCC-CCCCEEEcccCCCCC----ccchhhcCC-CCCcEeccccccccCc----chhhhccCCCCcEEec
Q 003321 707 QELPA----DIGKM-KSLQILRLYACPHLR----TLPARICEL-VCLKYLNISQCVSLSC----LPQGIGNLIRLEKIDM 772 (830)
Q Consensus 707 ~~lp~----~i~~l-~~L~~L~l~~~~~l~----~lp~~~~~l-~~L~~L~L~~c~~l~~----lp~~l~~l~~L~~L~l 772 (830)
...+. .+..+ ++|++|++++|.... .++..+..+ ++|++|+|++|..... +...+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 33332 33444 488888888865333 155556553 4888888888643322 2233466788888888
Q ss_pred cCccC-------CccCCccccccccCceeecCch
Q 003321 773 RECSQ-------IWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 773 ~~~~~-------l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
++|.. +..++..+.++++|+.+++++|
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 88861 1233445667777888887766
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=3e-12 Score=149.78 Aligned_cols=208 Identities=17% Similarity=0.168 Sum_probs=152.9
Q ss_pred hhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCC
Q 003321 587 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 666 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 666 (830)
...+++|+.|++.++........ ...+..+.+|++|++..+.+..++..+..+.+|+.+++..+......+. ....
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---~~~~ 442 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCC-SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF---SVFL 442 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEC-CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS---CTTT
T ss_pred cccccccccchhhcccccccccc-ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc---cccc
Confidence 34567788887766543321111 1123356678888888887777777788888888888877665443322 2234
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCc-cchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQE-LPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
.+++++.++++.|......|..+..+++|++|++++|..... .|..+..+++|++|+|++|......|..++.+++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 578888999988866566677788899999999999875544 5677889999999999998655555777899999999
Q ss_pred eccccccccCcc-hhhhccCCCCcEEeccCccCCccCCcccccc-ccCceeecCch
Q 003321 746 LNISQCVSLSCL-PQGIGNLIRLEKIDMRECSQIWSLPKSVNSL-KSLRQVICEED 799 (830)
Q Consensus 746 L~L~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l-~~L~~l~~~~~ 799 (830)
|+|++|. +..+ |..+.++++|+.|++++|......|..+..+ ++|+.|++++|
T Consensus 523 L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 523 LNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 9999864 5555 4568899999999999999666667778877 67998876544
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=2e-12 Score=128.80 Aligned_cols=150 Identities=11% Similarity=0.136 Sum_probs=95.3
Q ss_pred CeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCCCEEE
Q 003321 621 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLS 699 (830)
Q Consensus 621 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~ 699 (830)
+.++++++.+..+|..+. ..+++|++++|.+....+.. ....+++|+.|++++|. +..++ ..+..+++|++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEE
Confidence 466777777777766543 34566666666554332211 12346667777777664 44443 3677777788888
Q ss_pred eeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCcc
Q 003321 700 VTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 700 L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
|++|......+..+..+++|++|++++|......|..+..+++|++|+|++|......|..+..+++|+.|++++|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 87766443334457777788888887766555556667777778888887754333336667777778888877776
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=2.3e-12 Score=128.41 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=92.2
Q ss_pred CeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEe
Q 003321 621 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 700 (830)
Q Consensus 621 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L 700 (830)
+.++++++.+..+|..+. .+|+.|++++|.+....+. ....+++|+.|+|++|......|..+.++++|++|+|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 456666666666665543 4666666666554432221 1234566667777666433333666777777777777
Q ss_pred eCcCCCCccchh-cCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh-hhccCCCCcEEeccCcc
Q 003321 701 TNCHSLQELPAD-IGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECS 776 (830)
Q Consensus 701 ~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 776 (830)
++|. +..+|.. +..+++|+.|+|++|......|..+..+++|++|+|++|. +..+|. .+..+++|+.|++++|+
T Consensus 88 s~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 88 YGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 7765 4455543 5677777777777765554445667777777777777743 444443 46777777777777776
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=4.8e-12 Score=125.01 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=124.6
Q ss_pred CeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEEE
Q 003321 621 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLS 699 (830)
Q Consensus 621 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~ 699 (830)
+.++.+++.+..+|..+. .+|++|++++|.+...... ....+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEE
Confidence 567778888888887663 6899999999877643222 23568899999999984 556665 468899999999
Q ss_pred eeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccccccccCcchhh-hccCCCCcEEeccCcc
Q 003321 700 VTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECS 776 (830)
Q Consensus 700 L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 776 (830)
+++|. +..+|. .++.+++|++|++++|.. ..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++++|+
T Consensus 83 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 83 LSTNQ-LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 99986 455554 478999999999999754 45554 4788999999999996 45566654 7889999999999997
Q ss_pred CCccCCccccccccCceeecCchhhhhHHHHhhhCC
Q 003321 777 QIWSLPKSVNSLKSLRQVICEEDVSWAWKDLEKTLP 812 (830)
Q Consensus 777 ~l~~lp~~~~~l~~L~~l~~~~~~~~~~~~l~~~lp 812 (830)
... .+++|+.|+. ..+.+.+.+|
T Consensus 160 ~~~-------~~~~l~~L~~------~~n~~~g~ip 182 (208)
T 2o6s_A 160 WDC-------TCPGIRYLSE------WINKHSGVVR 182 (208)
T ss_dssp BCC-------CTTTTHHHHH------HHHHCTTTBB
T ss_pred eec-------CCCCHHHHHH------HHHhCCceee
Confidence 433 3445666543 3344555555
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=4.6e-12 Score=127.08 Aligned_cols=149 Identities=21% Similarity=0.187 Sum_probs=109.9
Q ss_pred ccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCE
Q 003321 619 NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKN 697 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~ 697 (830)
..+.++.+++.+..+|..+. .+|++|++++|.+....+.. ...+++|++|+|++|. +..+|. .+..+++|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTV 92 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCC-CCCcChhhcccCCCcCE
Confidence 35678888888999997664 78999999888766543332 3457788888888875 566654 4578888888
Q ss_pred EEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh-hhccCCCCcEEeccCc
Q 003321 698 LSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMREC 775 (830)
Q Consensus 698 L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~ 775 (830)
|+|++|. +..+| ..+..+++|+.|++++|. +..+|..+..+++|++|+|++| .+..+|. .+..+++|+.|++++|
T Consensus 93 L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 93 LDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 8888875 45555 346788888888888754 5578888888888888888875 5556654 4777888888888888
Q ss_pred cC
Q 003321 776 SQ 777 (830)
Q Consensus 776 ~~ 777 (830)
+.
T Consensus 170 ~~ 171 (229)
T 3e6j_A 170 PW 171 (229)
T ss_dssp CB
T ss_pred Cc
Confidence 73
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=3.3e-11 Score=131.47 Aligned_cols=275 Identities=12% Similarity=0.048 Sum_probs=174.3
Q ss_pred ccccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhccccc----cccc-CCceEEEEecCCC-CHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQV----TSYF-NNRILFLTVSQSP-NVEQL 253 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~----~~~F-~~~~~wv~v~~~~-~~~~l 253 (830)
..++||+.+++++.+++.. ....+.+.|+|++|+||||||+.+++...- ...+ ...++|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 4579999999999988753 345679999999999999999999953211 1112 3455678777766 88888
Q ss_pred HHHHHHhhcCCCCCCCCCCc-ccchHHHHhhcCCcEEEEEeCCCChH------h-HHHhhhcCCCceEEEEeccccc---
Q 003321 254 RAKVWGFVSGCDSMEPNYVI-PHWNLQIQSKLGSRCLVVLDDVWSLA------V-LEQLIFRVPGCKTLVVSRFKFS--- 322 (830)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~l~~kr~LlVlDdv~~~~------~-~~~l~~~~~gs~iivTtr~~~~--- 322 (830)
...++..+.+.......... .........+..++.+|||||++... . +..+....++..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 88888887543222111111 12233334455555599999998642 2 3344443367889999887531
Q ss_pred -c-----cccceEEccCCCHHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHcC---CchH-HHHHHHHHh--c-C-
Q 003321 323 -T-----VLNDTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCK---GLPL-ALKVIGASL--R-E- 385 (830)
Q Consensus 323 -~-----~~~~~~~l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~L--~-~- 385 (830)
. .....+++++++.++..++|...+ |..... .++....+++.++ |.|. |+.++.... . +
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY----DDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC----CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc----CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 1 223489999999999999999874 332222 2346777888887 8887 444443332 1 1
Q ss_pred --CChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHH--HHHH--hc--C
Q 003321 386 --QPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLIN--MWVE--IH--D 457 (830)
Q Consensus 386 --~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~--~Wia--~~--~ 457 (830)
-+.+.+..++.... ...+.-++..|+++.+..+..++....+ ..+.. .-++ .| .
T Consensus 256 ~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~~~~-----~~~~~~~~~~~~~~g~~~ 317 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIESEDV-----MSAHKMYTDLCNKFKQKP 317 (384)
T ss_dssp SCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTCCBH-----HHHHHHHHHHHHHTTCCC
T ss_pred CccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHhccc-----ChHHHHHHHHHHHcCCCC
Confidence 13455665555421 2346677889999888887777761110 11111 1112 12 2
Q ss_pred CCHHHHHHHHHHHhhhhhHHHH
Q 003321 458 LDEEEAFAILVELSDRNLLKIV 479 (830)
Q Consensus 458 ~~~~~~~~~l~~L~~r~l~~~~ 479 (830)
........++..|...++++..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 4456778899999999998754
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=7.5e-14 Score=159.07 Aligned_cols=193 Identities=17% Similarity=0.137 Sum_probs=132.4
Q ss_pred CCCccccCeeeecccccCccCCCccccCCCceEEeeeccccc---------cccccccCcCCCCCccceec-ccccc---
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINN---------SLDQSVVDLPKTLPCLTELT-FDHCD--- 680 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~~~~~~~~L~~L~-l~~~~--- 680 (830)
+..+++|+.|+|++|.+..+|..+..+++|+.|++..|.... ...+..+.....+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 356788899999999999999999999999998875443100 01111122223455666666 33221
Q ss_pred ---------ccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccc
Q 003321 681 ---------DLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 751 (830)
Q Consensus 681 ---------~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 751 (830)
.+..+|. ..|++|+|++|. ++.+|. ++.+++|+.|++++|. +..+|..++.+++|+.|+|++|
T Consensus 425 L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhhcccccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC
Confidence 1222222 258888888874 666776 8888888888888864 5588888888888888888885
Q ss_pred cccCcchhhhccCCCCcEEeccCccCCccC--CccccccccCceeecCchhhhhHH----HHhhhCCCceee
Q 003321 752 VSLSCLPQGIGNLIRLEKIDMRECSQIWSL--PKSVNSLKSLRQVICEEDVSWAWK----DLEKTLPNLHVQ 817 (830)
Q Consensus 752 ~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~l~~~~~~~~~~~----~l~~~lp~L~~~ 817 (830)
.++.+| .++.+++|+.|+|++|. +..+ |..++.+++|+.|++++|...... .+...+|+|+.+
T Consensus 497 -~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 497 -ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp -CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 556677 78888888888888887 5555 788888888888888877443321 234457777654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.1e-12 Score=134.56 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=134.5
Q ss_pred hcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCC
Q 003321 589 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 668 (830)
Q Consensus 589 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 668 (830)
++.++..+.+.++.. ..+..+..+++|++|++++|.+..+| .+..+++|++|++++|.+....+ ...+
T Consensus 17 ~l~~l~~l~l~~~~i-----~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~------l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-----TDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP------LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCT-----TSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred HHHHHHHHHhcCCCc-----ccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh------hccC
Confidence 455566665554432 22334678899999999999999998 78889999999999998765332 3568
Q ss_pred CccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEecc
Q 003321 669 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 748 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 748 (830)
++|+.|++++| .+..+|.... ++|++|++++|. +..++ .++.+++|+.|++++|. +..+| .++.+++|++|++
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEEC
T ss_pred CCCCEEECCCC-ccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEEC
Confidence 99999999998 4666775433 999999999986 56665 68999999999999965 55666 6889999999999
Q ss_pred ccccccCcchhhhccCCCCcEEeccCccCCccCC
Q 003321 749 SQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 782 (830)
Q Consensus 749 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp 782 (830)
++| .+..+ ..+..+++|+.|++++|+ +...|
T Consensus 158 ~~N-~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 158 HGN-EITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp TTS-CCCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred CCC-cCcch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 996 45555 568899999999999998 44444
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=139.03 Aligned_cols=111 Identities=23% Similarity=0.331 Sum_probs=53.4
Q ss_pred CCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcE
Q 003321 668 LPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 745 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 745 (830)
+++|+.|+|++|. +..+| ..+..+++|++|+|++|. +..++ ..+..+++|+.|+|++|......|..+..+++|++
T Consensus 63 l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 63 LTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 4455555555542 23332 345555555555555544 33333 23455555555555554433333444555555555
Q ss_pred eccccccccCcchhhh----ccCCCCcEEeccCccCCccCC
Q 003321 746 LNISQCVSLSCLPQGI----GNLIRLEKIDMRECSQIWSLP 782 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l----~~l~~L~~L~l~~~~~l~~lp 782 (830)
|+|++| .+..+|..+ ..+++|+.|+|++|. +..+|
T Consensus 141 L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 141 LYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp EECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred EECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 555553 344444432 345555555555555 33444
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=6.9e-14 Score=151.25 Aligned_cols=231 Identities=10% Similarity=0.042 Sum_probs=116.4
Q ss_pred ceEEEeeeCCcccccc-----cccCCC-ceEEEEeeCccCcccccChhhhhc-----ccCceEEEccccCCccccCCC-C
Q 003321 545 AQIVSIHTGDMREMDW-----FRMEFP-KAEVLILNFSSTEEYFLPPFIENM-----EKLRALIVINYSTSNAALGNF-S 612 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~~-----~~~~~~-~~~~l~l~~~~~~~~~lp~~i~~l-----~~Lr~L~l~~~~~~~~~~~~~-~ 612 (830)
.+.+.+....+..... .-..+| +++.|.+..+.. ....+..+..+ ++|++|++.++.........+ .
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4555555554443321 011344 566666554432 11223334443 677777776665432211111 1
Q ss_pred CCCCc-cccCeeeecccccCccCCC-----ccc-cCCCceEEeeeccccccccccccCcCCCCC-ccceeccccccccCc
Q 003321 613 VCSNL-TNLRSLWLEKVSISQLPKS-----SIP-LKKMQKISFVLCKINNSLDQSVVDLPKTLP-CLTELTFDHCDDLMK 684 (830)
Q Consensus 613 ~l~~l-~~L~~L~L~~~~i~~lp~~-----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~ 684 (830)
.+..+ ++|++|++++|.+...+.. +.. ..+|++|++++|.+.......+......++ +|++|++++|.....
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 12233 5677777777776654432 222 246777777776655322222222112233 677777777643222
Q ss_pred ccc----ccCCC-CCCCEEEeeCcCCCCc-----cchhcCCC-CCCCEEEcccCCCCCccc----hhhcCCCCCcEeccc
Q 003321 685 LPP----SICGL-QSLKNLSVTNCHSLQE-----LPADIGKM-KSLQILRLYACPHLRTLP----ARICELVCLKYLNIS 749 (830)
Q Consensus 685 lp~----~i~~l-~~L~~L~L~~c~~l~~-----lp~~i~~l-~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~L~ 749 (830)
.+. .+..+ ++|++|+|++|. +.. ++..+..+ ++|++|++++|......+ ..+..+++|++|+++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 222 23334 477777777765 333 45455443 467777777764433222 234556677777777
Q ss_pred cccc-------cCcchhhhccCCCCcEEeccCccC
Q 003321 750 QCVS-------LSCLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 750 ~c~~-------l~~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
+|.. +..++..+..+++|+.|++++|..
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 6541 223344455666777777777763
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=4.9e-12 Score=120.27 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=89.5
Q ss_pred ccccCeeeecccccC--ccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCC
Q 003321 617 LTNLRSLWLEKVSIS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 694 (830)
Q Consensus 617 l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~ 694 (830)
+++|++|++++|.+. .+|..+..+++|++|++++|.+ ..+ ..++.+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-----------------------------~~~-~~~~~l~~ 72 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----------------------------ISV-SNLPKLPK 72 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-----------------------------CCC-SSCCCCSS
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-----------------------------CCh-hhhccCCC
Confidence 467788888888777 6776666666666666665432 222 44666777
Q ss_pred CCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc--hhhcCCCCCcEeccccccccCcchh----hhccCCCCc
Q 003321 695 LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICELVCLKYLNISQCVSLSCLPQ----GIGNLIRLE 768 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~L~~c~~l~~lp~----~l~~l~~L~ 768 (830)
|++|++++|.....+|..+..+++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCC
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCc
Confidence 7777777766444466666667777777777763 44444 56777788888888775 3445554 577788888
Q ss_pred EEeccCccCCccCCc
Q 003321 769 KIDMRECSQIWSLPK 783 (830)
Q Consensus 769 ~L~l~~~~~l~~lp~ 783 (830)
.|++++|. ..++|.
T Consensus 151 ~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 151 YLDGYDRE-DQEAPD 164 (168)
T ss_dssp EETTEETT-SCBCCS
T ss_pred EecCCCCC-hhhccc
Confidence 88888877 555654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.8e-12 Score=131.60 Aligned_cols=159 Identities=20% Similarity=0.287 Sum_probs=127.1
Q ss_pred CccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCCceEEeeecccc
Q 003321 575 FSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKIN 654 (830)
Q Consensus 575 ~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 654 (830)
+..+....++ .+..+++|++|++.++... .++.+..+++|++|++++|.+..+|. +..+++|++|++++|.+.
T Consensus 26 l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-----~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 26 LGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-----SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HTCSCTTSEE-CHHHHTTCSEEECTTSCCC-----CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred hcCCCccccc-chhhcCcCcEEECcCCCcc-----cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 3333344455 5889999999999887543 23457889999999999999999988 889999999999999876
Q ss_pred ccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc
Q 003321 655 NSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP 734 (830)
Q Consensus 655 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 734 (830)
.. + .... ++|+.|++++| .+..+| .++.+++|++|++++|. ++.++ .++.+++|+.|++++|... .+
T Consensus 99 ~l-~----~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~-~~- 165 (263)
T 1xeu_A 99 NL-N----GIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT-NT- 165 (263)
T ss_dssp CC-T----TCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCC-BC-
T ss_pred Cc-C----cccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCc-ch-
Confidence 42 1 1212 89999999998 466665 59999999999999986 66666 6889999999999997644 44
Q ss_pred hhhcCCCCCcEeccccccc
Q 003321 735 ARICELVCLKYLNISQCVS 753 (830)
Q Consensus 735 ~~~~~l~~L~~L~L~~c~~ 753 (830)
..+..+++|+.|++++|..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCcc
Confidence 6688999999999999653
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=5.1e-12 Score=120.11 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=109.6
Q ss_pred CCccceecccccccc-CccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 668 LPCLTELTFDHCDDL-MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l-~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 577888999888643 3788888999999999999987 5666 789999999999999987666688888889999999
Q ss_pred ccccccccCcch--hhhccCCCCcEEeccCccCCccCCc----cccccccCceeecCchh
Q 003321 747 NISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK----SVNSLKSLRQVICEEDV 800 (830)
Q Consensus 747 ~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~l~~~~~~ 800 (830)
++++| .+..+| ..+..+++|+.|++++|. +..+|. .+..+++|+.|++.++.
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99996 567766 679999999999999998 666765 78889999999887763
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=1.3e-12 Score=151.53 Aligned_cols=258 Identities=13% Similarity=0.024 Sum_probs=142.9
Q ss_pred CCCceEEEEeeCccCcccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCCccccCCC
Q 003321 564 EFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKM 643 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 643 (830)
.+++++.|.+..+. ...+|..+.++++|+.|.+..+.........+..+..+++|+.|+++++....+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE--ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCB--GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCcc--HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 34566666555432 3345666777777777777543221111112233444455555555554444444444455555
Q ss_pred ceEEeeeccccccc---------------------cccccCcCCCCCccceecccc----------ccccCc--cccccC
Q 003321 644 QKISFVLCKINNSL---------------------DQSVVDLPKTLPCLTELTFDH----------CDDLMK--LPPSIC 690 (830)
Q Consensus 644 ~~L~l~~~~~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~----------~~~l~~--lp~~i~ 690 (830)
++|++++|.+.... ...+..+...+++|++|++++ |..+.. ++....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 55555554421100 011111112355666666663 443332 222234
Q ss_pred CCCCCCEEEeeCcCCCCccchhcCC-CCCCCEEEccc---CCCCCc------cchhhcCCCCCcEeccccccc-cC-cch
Q 003321 691 GLQSLKNLSVTNCHSLQELPADIGK-MKSLQILRLYA---CPHLRT------LPARICELVCLKYLNISQCVS-LS-CLP 758 (830)
Q Consensus 691 ~l~~L~~L~L~~c~~l~~lp~~i~~-l~~L~~L~l~~---~~~l~~------lp~~~~~l~~L~~L~L~~c~~-l~-~lp 758 (830)
.+++|++|+++.+......+..++. +++|+.|++++ |+.+.. ++..+..+++|++|++++|.. +. ..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4677777777544333333444444 77888888873 445554 333466788899999877653 22 222
Q ss_pred hhh-ccCCCCcEEeccCccCCc-cCCccccccccCceeecCchhh--hhHHHHhhhCCCceeeeccccc
Q 003321 759 QGI-GNLIRLEKIDMRECSQIW-SLPKSVNSLKSLRQVICEEDVS--WAWKDLEKTLPNLHVQVPAKCF 823 (830)
Q Consensus 759 ~~l-~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~l~~~~~~~--~~~~~l~~~lp~L~~~~~~~~~ 823 (830)
..+ ..+++|+.|++++|.... .++..+..+++|+.|++++|.. .....+...+|+|+.....+|.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 333 348889999999887433 3555667789999999888752 1123455678999888777765
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=6.1e-12 Score=116.92 Aligned_cols=126 Identities=22% Similarity=0.206 Sum_probs=102.3
Q ss_pred CCccceecccccccc-CccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 668 LPCLTELTFDHCDDL-MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l-~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.++|+.|++++|... ..+|..++.+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 567888888888644 4788888999999999999985 5555 678899999999999987666588888889999999
Q ss_pred ccccccccCcch--hhhccCCCCcEEeccCccCCccCCc----cccccccCceeecC
Q 003321 747 NISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK----SVNSLKSLRQVICE 797 (830)
Q Consensus 747 ~L~~c~~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~l~~~ 797 (830)
++++|. +..+| ..++.+++|+.|++++|. +..+|. .+..+++|+.|+++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999864 56654 778999999999999998 566664 67888889888764
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.9e-13 Score=157.08 Aligned_cols=258 Identities=16% Similarity=0.148 Sum_probs=135.9
Q ss_pred CCCceEEEEeeCccCcccccChhhh-hcccCceEEEccccC-CccccCCCCCCCCccccCeeeecccccCc-----cCCC
Q 003321 564 EFPKAEVLILNFSSTEEYFLPPFIE-NMEKLRALIVINYST-SNAALGNFSVCSNLTNLRSLWLEKVSISQ-----LPKS 636 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~~~~lp~~i~-~l~~Lr~L~l~~~~~-~~~~~~~~~~l~~l~~L~~L~L~~~~i~~-----lp~~ 636 (830)
.+++++.|.+..+.... ..+..+. .+++|++|++.++.. ...... ..+.++++|++|++++|.+.. ++..
T Consensus 103 ~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEGFSTDGLA--AIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEEEEHHHHH--HHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCCCCHHHHH--HHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 46677777776654322 2223343 677888888876531 110000 112357788888888877553 3333
Q ss_pred ccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCcC------------
Q 003321 637 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCH------------ 704 (830)
Q Consensus 637 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~------------ 704 (830)
...+++|++|++++|. ...-...+..+...+++|++|++++|..+..+|..+..+++|++|+++.|.
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 3456788888887765 111111122222346788888888876666677777777888888765442
Q ss_pred -------CCCc-----------cchhcCCCCCCCEEEcccCCCCCc--cchhhcCCCCCcEeccccccccCcchhhhccC
Q 003321 705 -------SLQE-----------LPADIGKMKSLQILRLYACPHLRT--LPARICELVCLKYLNISQCVSLSCLPQGIGNL 764 (830)
Q Consensus 705 -------~l~~-----------lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l 764 (830)
.+.. +|..+..+++|++|++++|. +.. ++..+..+++|++|++++|.....++.....+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 1111 22222245667777777665 321 22234566777777777652222233333456
Q ss_pred CCCcEEeccCc--------cCCcc--CCccccccccCceeecC--chhhhhHHHHhhhCCCceeeecc-----ccccCC
Q 003321 765 IRLEKIDMREC--------SQIWS--LPKSVNSLKSLRQVICE--EDVSWAWKDLEKTLPNLHVQVPA-----KCFSLD 826 (830)
Q Consensus 765 ~~L~~L~l~~~--------~~l~~--lp~~~~~l~~L~~l~~~--~~~~~~~~~l~~~lp~L~~~~~~-----~~~~l~ 826 (830)
++|+.|++.+| ..+.. +......+++|+.|... +-.......+...+|+|+..... .|.+++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 77777777432 21211 11111235566665332 22222233344467777766555 455554
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=5.3e-11 Score=130.00 Aligned_cols=311 Identities=12% Similarity=0.041 Sum_probs=181.8
Q ss_pred ccccccchhhHHHHHHHhc---CCC--ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG---RDD--LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~--~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..++||+.+++++.+++.. ... .+.+.|+|++|+||||||+.+++. ........+++++.+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 5689999999999998864 233 348999999999999999999854 222212345577777777788888888
Q ss_pred HHhhcCCCCCCCCCCccc-chHHHHhh--cCCcEEEEEeCCCCh--HhHHHhhhcC--------CCceEEEEecccccc-
Q 003321 258 WGFVSGCDSMEPNYVIPH-WNLQIQSK--LGSRCLVVLDDVWSL--AVLEQLIFRV--------PGCKTLVVSRFKFST- 323 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~-~~~~~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~~--------~gs~iivTtr~~~~~- 323 (830)
+..+...... ....... .......+ .+++.+||||+++.. +.+..+.... .+..+|++|+.....
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 8877433211 1111111 11111222 367899999999863 4444443221 366778887765221
Q ss_pred ---------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHc---------CCchHHHHHHHHH-hc
Q 003321 324 ---------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKC---------KGLPLALKVIGAS-LR 384 (830)
Q Consensus 324 ---------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~-L~ 384 (830)
.....+.+++++.++..+++...+-.... .....++....+++.+ +|.|..+..+... ..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 11236999999999999999876421000 1122356788899999 7887554433322 21
Q ss_pred -----CCC---hHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCCC---CCCccCHHHHHHHHH
Q 003321 385 -----EQP---EMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFP---EDKKIPLEVLINMWV 453 (830)
Q Consensus 385 -----~~~---~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~Li~~Wi 453 (830)
+.. ......+...... ..+.-.+..|+.+.+.++..++.+. .+..+....+...+-
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 212 2222222222211 0122345678888888877777554 222456666666554
Q ss_pred Hh------cCCCHHHHHHHHHHHhhhhhHHHHhhhhccCCccccc--ccccchhhHHHHHHHHHhh
Q 003321 454 EI------HDLDEEEAFAILVELSDRNLLKIVKDARRAGDMYSSY--YEISVTQHDVLRDLALHLS 511 (830)
Q Consensus 454 a~------~~~~~~~~~~~l~~L~~r~l~~~~~~~~~~g~~~~~~--~~~~~~mHdli~~~~~~~~ 511 (830)
.. ..........++.+|.+.+++.........|. +..+ +...+..|+++..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~-~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 320 IVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGV-RGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC----------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCC-CCceeEEEeCCCHHHHHHHHHHHHH
Confidence 32 23456778899999999999986543100121 1111 1223456777776555443
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.30 E-value=2.1e-10 Score=125.07 Aligned_cols=280 Identities=14% Similarity=0.086 Sum_probs=172.1
Q ss_pred ccccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhccccccc---ccCCceEEEEecCCCCHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTS---YFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~---~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..++||+.+++++..++.. ....+.+.|+|++|+||||+|+.+++...-.. .....++|++.....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5689999999999998843 25667899999999999999999995321110 11334567887777888888999
Q ss_pred HHHhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH-------hHHHhhh---c---CCCceEEEEecccc
Q 003321 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-------VLEQLIF---R---VPGCKTLVVSRFKF 321 (830)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~-------~~~~l~~---~---~~gs~iivTtr~~~ 321 (830)
++..+.....................+ .+++.+||||+++... .+..+.. . ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 998885432211111111122223333 4568999999998643 2222222 1 23557777776652
Q ss_pred cc---------ccc-ceEEccCCCHHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHHcC---CchH-HHHHHHHHhc
Q 003321 322 ST---------VLN-DTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCK---GLPL-ALKVIGASLR 384 (830)
Q Consensus 322 ~~---------~~~-~~~~l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~L~ 384 (830)
.. ... ..+.+++++.++..+++...+ +..... .++....++++++ |.|- ++.++.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL----DPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB----CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC----CHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 21 112 478999999999999998774 332222 2336777888888 9994 3333333221
Q ss_pred -----CC---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhC-CCCCCCccCHHHHHHHHHH-
Q 003321 385 -----EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLG-SFPEDKKIPLEVLINMWVE- 454 (830)
Q Consensus 385 -----~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i~~~~Li~~Wia- 454 (830)
+. +...+..++... ....+.-++..|+++.+..++.++ ++-....+....+.+....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEI-------------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHH-------------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHH-------------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 11 234455554432 123456678899999888777666 3332234555655444322
Q ss_pred ---hc--CCCHHHHHHHHHHHhhhhhHHHH
Q 003321 455 ---IH--DLDEEEAFAILVELSDRNLLKIV 479 (830)
Q Consensus 455 ---~~--~~~~~~~~~~l~~L~~r~l~~~~ 479 (830)
.+ ......+..+++.|...++++..
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 11 23456778899999999988764
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.9e-11 Score=121.73 Aligned_cols=148 Identities=12% Similarity=0.118 Sum_probs=116.5
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCcc-c-cccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCC
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKL-P-PSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQ 720 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~ 720 (830)
+.++++++.+.. ++..+ .+.++.|++++|. +..+ | ..+..+++|++|+|++|. +..++ ..+..+++|+
T Consensus 14 ~~l~~s~n~l~~-iP~~~------~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI------PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSS-CCSCC------CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCccc-CccCC------CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCC
Confidence 477777766543 22221 3567899999985 5555 3 347899999999999987 55555 5799999999
Q ss_pred EEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCCccCCccccccccCceeecCchh
Q 003321 721 ILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 721 ~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~~~~~ 800 (830)
+|++++|......|..+..+++|++|+|++|......|..+..+++|+.|+|++|......|..+..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999987655556669999999999999975544457779999999999999999555558899999999999987774
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=3.9e-13 Score=155.94 Aligned_cols=247 Identities=14% Similarity=0.045 Sum_probs=135.1
Q ss_pred eEEEEeeCccC-cccccChhhhhcccCceEEEccccCCccccCCC-CCCCCccccCeeeecccccC-----ccCCCcccc
Q 003321 568 AEVLILNFSST-EEYFLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSIS-----QLPKSSIPL 640 (830)
Q Consensus 568 ~~~l~l~~~~~-~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l 640 (830)
++.|.+..+.. ....++....++++|++|++.++.........+ ..+.++++|++|++++|.+. .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 55555544431 111233334456666666665553211100000 01234566666666666654 233334456
Q ss_pred CCCceEEeeeccccccccccccCcCCCCCccceecccccccc---CccccccCCCCCCCEEEeeCcCCCCccchhcCCCC
Q 003321 641 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL---MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMK 717 (830)
Q Consensus 641 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l---~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~ 717 (830)
++|++|++.+|.+.. ++.....+++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+..++
T Consensus 220 ~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA 293 (592)
T ss_dssp TTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred CCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence 666666666655432 1112234566666666643322 233445666777777777764 3455676777788
Q ss_pred CCCEEEcccCCCCCc-cchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccC----------ccCCcc--CCcc
Q 003321 718 SLQILRLYACPHLRT-LPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRE----------CSQIWS--LPKS 784 (830)
Q Consensus 718 ~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~----------~~~l~~--lp~~ 784 (830)
+|++|++++|..... ++..+..+++|++|+++++.....++.....+++|++|++++ |..+.. ++..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 888888888772221 223357788888888875433334455556788888888884 544442 3333
Q ss_pred ccccccCceeecCch--hhhhHHHHhhhCCCceeeecc
Q 003321 785 VNSLKSLRQVICEED--VSWAWKDLEKTLPNLHVQVPA 820 (830)
Q Consensus 785 ~~~l~~L~~l~~~~~--~~~~~~~l~~~lp~L~~~~~~ 820 (830)
...+++|+.|++..+ .......+...+|+|+.....
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 445778888776322 222333455567777776655
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.7e-11 Score=132.32 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=81.3
Q ss_pred ccCeeeecccccCccCCCcc--ccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccc-cccCCCCCC
Q 003321 619 NLRSLWLEKVSISQLPKSSI--PLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSL 695 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L 695 (830)
.+++|+|++|.+..++.... .+.+|++|++++|.+....+.. ...+++|++|+|++|. +..+| ..+..+++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh----ccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 35555555555555554422 4555666666555544322221 2345566666666653 33443 345666667
Q ss_pred CEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhh----cCCCCCcEeccccccccCcch-hhhccCCC--Cc
Q 003321 696 KNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI----CELVCLKYLNISQCVSLSCLP-QGIGNLIR--LE 768 (830)
Q Consensus 696 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~----~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~--L~ 768 (830)
++|+|++|......|..+..+++|+.|+|++| .+..+|..+ ..+++|+.|+|++| .+..+| ..+..++. |+
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHT
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcc
Confidence 77777666533333456666667777776664 344455443 45666777777664 444444 33555555 36
Q ss_pred EEeccCcc
Q 003321 769 KIDMRECS 776 (830)
Q Consensus 769 ~L~l~~~~ 776 (830)
.|+|++|+
T Consensus 193 ~l~l~~N~ 200 (361)
T 2xot_A 193 GLYLHNNP 200 (361)
T ss_dssp TEECCSSC
T ss_pred eEEecCCC
Confidence 66666665
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=2.8e-11 Score=141.47 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=156.6
Q ss_pred CCCceEEEEeeCccCc-ccccChhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccC--CCcccc
Q 003321 564 EFPKAEVLILNFSSTE-EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP--KSSIPL 640 (830)
Q Consensus 564 ~~~~~~~l~l~~~~~~-~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp--~~~~~l 640 (830)
.++.++.+.+...... ....|..+..+.+|++|++..+..... ...+..+++|+.+++..+.....+ ..+..+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE----CSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccc----cccccccccccchhhhhccccccccccccccc
Confidence 4567777766554432 224566778889999999876653221 234668899999999988766443 346778
Q ss_pred CCCceEEeeeccccccccccccCcCCCCCccceeccccccccCc-cccccCCCCCCCEEEeeCcCCCCccchhcCCCCCC
Q 003321 641 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMK-LPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSL 719 (830)
Q Consensus 641 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 719 (830)
.+++.++++.|.+....+. ....+++|+.|++++|..... .|..+..+++|++|+|++|......|..++++++|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~----~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccccccccccc----ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 9999999998876544333 335578999999999875544 67789999999999999987544456789999999
Q ss_pred CEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccC-CCCcEEeccCccC
Q 003321 720 QILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNL-IRLEKIDMRECSQ 777 (830)
Q Consensus 720 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l-~~L~~L~l~~~~~ 777 (830)
++|+|++|......|..+..+++|++|+|++|......|..+.++ ++|+.|+|++|+.
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999976555456678999999999999976555566778887 6899999999883
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.5e-12 Score=153.07 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=107.7
Q ss_pred eecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEeeCc
Q 003321 624 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 703 (830)
Q Consensus 624 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c 703 (830)
++..+.+...|..+..+.+|+.|+|++|.+. .++..+ ..+++|++|+|++|. +..+|..++.|++|++|+|++|
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~----~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANI----FKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGG----GGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhh----cCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC
Confidence 3334444555677888999999999988876 333332 247899999999984 5689999999999999999998
Q ss_pred CCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCC-CcEEeccCccCCccCC
Q 003321 704 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIR-LEKIDMRECSQIWSLP 782 (830)
Q Consensus 704 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~-L~~L~l~~~~~l~~lp 782 (830)
. +..+|..+++|++|++|+|++| .+..+|..++.|++|++|+|++|.....+|..+..+.. +..|++++|.....+|
T Consensus 281 ~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 R-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp C-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred c-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7 5588999999999999999987 46788988999999999999997666666666654322 2236677777666666
Q ss_pred ccc
Q 003321 783 KSV 785 (830)
Q Consensus 783 ~~~ 785 (830)
..+
T Consensus 359 ~~l 361 (727)
T 4b8c_D 359 HER 361 (727)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=3e-11 Score=120.25 Aligned_cols=130 Identities=15% Similarity=0.296 Sum_probs=106.4
Q ss_pred CCccceeccccccccCcccc-ccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh-hcCCCCCcE
Q 003321 668 LPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKY 745 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~ 745 (830)
.++|+.|++++|. +..+|+ .+..+++|++|+|++|......|..+.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 3689999999985 555554 78999999999999987555557889999999999999965 5566654 688999999
Q ss_pred eccccccccCcchhhhccCCCCcEEeccCccCCccCC-ccccccccCceeecCchh
Q 003321 746 LNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDV 800 (830)
Q Consensus 746 L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~~ 800 (830)
|+|++|......|..+..+++|+.|+|++|. +..+| ..+..+++|+.|++++|.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999975544456779999999999999999 55555 468889999999887763
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.1e-12 Score=154.20 Aligned_cols=140 Identities=17% Similarity=0.182 Sum_probs=103.4
Q ss_pred CCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCC
Q 003321 612 SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG 691 (830)
Q Consensus 612 ~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~ 691 (830)
..+..+++|+.|+|++|.+..+|..++.+++|++|+|++|.+. .++..+ ..+++|++|+|++|. +..+|..++.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~----~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEI----KNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGG----GGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhh----hCCCCCCEEeCcCCc-CCccChhhcC
Confidence 3466788889999999988888888888889999999888766 343332 457889999999885 5588988999
Q ss_pred CCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCC-CcEeccccccccCcch
Q 003321 692 LQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVC-LKYLNISQCVSLSCLP 758 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~-L~~L~L~~c~~l~~lp 758 (830)
|++|++|+|++|. +..+|..|+.|++|+.|+|++|.....+|..+..+.. +..|+|++|.....+|
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 9999999999875 6788888999999999999998776677766544321 1235566654443444
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.5e-13 Score=156.46 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=101.0
Q ss_pred CccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEecc
Q 003321 669 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNI 748 (830)
Q Consensus 669 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 748 (830)
..|+.|++++| .+..+|. ++.+++|++|+|++|. +..+|..++.+++|+.|+|++|. +..+| .++.+++|++|+|
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEEC
Confidence 35889999998 5677887 9999999999999986 66899999999999999999965 55688 8999999999999
Q ss_pred ccccccCcc--hhhhccCCCCcEEeccCccCCccCCcccc----ccccCceee
Q 003321 749 SQCVSLSCL--PQGIGNLIRLEKIDMRECSQIWSLPKSVN----SLKSLRQVI 795 (830)
Q Consensus 749 ~~c~~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~~----~l~~L~~l~ 795 (830)
++| .+..+ |..++.+++|+.|++++|+ +..+|..+. .+++|+.|+
T Consensus 516 s~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 996 45555 8899999999999999998 666665443 378888875
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.1e-10 Score=127.28 Aligned_cols=279 Identities=15% Similarity=0.132 Sum_probs=167.0
Q ss_pred ccccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhccccccccc--CCceEEEEecCCCCHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF--NNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F--~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..++||+.+++.+.+++.. ....+.+.|+|++|+||||||+.+++. ....+ ...++|++.....+...+...+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 5689999999999998864 355678999999999999999999953 33333 3345677776666777788888
Q ss_pred HHhhcCCCCCCCCCCccc-chHHHHhh--cCCcEEEEEeCCCCh------HhHHHhhh---c--CCCceEEEEecccccc
Q 003321 258 WGFVSGCDSMEPNYVIPH-WNLQIQSK--LGSRCLVVLDDVWSL------AVLEQLIF---R--VPGCKTLVVSRFKFST 323 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~-~~~~~~~l--~~kr~LlVlDdv~~~------~~~~~l~~---~--~~gs~iivTtr~~~~~ 323 (830)
+..+...... ....... .....+.+ .+++.+||||+++.. +.+..+.. . ..+..+|+||+.....
T Consensus 98 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 7776432211 1111111 22222223 355899999999753 33333332 1 2245667777755321
Q ss_pred ---------c-ccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcC---CchHHH-HHHHHHhc-----
Q 003321 324 ---------V-LNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCK---GLPLAL-KVIGASLR----- 384 (830)
Q Consensus 324 ---------~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~L~----- 384 (830)
. ....+++++++.++..+++...+-.... .....++....+++.++ |.|..+ .++.....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 1 1247999999999999999875421000 11223456777888887 999844 33333221
Q ss_pred CC---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCC-C-CccCHHHHHHHHHH----h
Q 003321 385 EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPE-D-KKIPLEVLINMWVE----I 455 (830)
Q Consensus 385 ~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~Li~~Wia----~ 455 (830)
+. +...+..++... ....+.-++..+|...+..+..++...+ + ..+....+.+.... .
T Consensus 256 ~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI-------------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp TCSSCCHHHHHHHHHHH-------------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH-------------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 11 233444444332 1234566778899888888777764322 1 22344444333221 1
Q ss_pred c--CCCHHHHHHHHHHHhhhhhHHH
Q 003321 456 H--DLDEEEAFAILVELSDRNLLKI 478 (830)
Q Consensus 456 ~--~~~~~~~~~~l~~L~~r~l~~~ 478 (830)
| .........+++.|...++++.
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 2 2234667788999999998864
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=1e-11 Score=115.36 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=81.8
Q ss_pred ccccCeeeecccccC--ccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCC
Q 003321 617 LTNLRSLWLEKVSIS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 694 (830)
Q Consensus 617 l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~ 694 (830)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+ ..+ ..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-----------------------------~~~-~~~~~l~~ 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----------------------------TSI-ANLPKLNK 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-----------------------------CCC-TTCCCCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-----------------------------CCc-hhhhcCCC
Confidence 467778888887776 6666656555555555554432 223 44666777
Q ss_pred CCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc--hhhcCCCCCcEeccccccccCcchh----hhccCCCCc
Q 003321 695 LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICELVCLKYLNISQCVSLSCLPQ----GIGNLIRLE 768 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~L~~c~~l~~lp~----~l~~l~~L~ 768 (830)
|++|++++|.....+|..++.+++|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .+..+++|+
T Consensus 66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCC
T ss_pred CCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcc
Confidence 7777777766444466666667777777777765 44433 66777778888888775 3444443 577778888
Q ss_pred EEeccC
Q 003321 769 KIDMRE 774 (830)
Q Consensus 769 ~L~l~~ 774 (830)
.|++++
T Consensus 144 ~L~l~d 149 (149)
T 2je0_A 144 YLDGYD 149 (149)
T ss_dssp EETTBC
T ss_pred cccCCC
Confidence 877653
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=6.2e-11 Score=118.81 Aligned_cols=129 Identities=24% Similarity=0.261 Sum_probs=83.4
Q ss_pred cccCeeeecccccCcc-CCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCC
Q 003321 618 TNLRSLWLEKVSISQL-PKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSL 695 (830)
Q Consensus 618 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L 695 (830)
++|++|+|++|.+..+ |..+..+++|++|++++|.+..... .....+++|+.|+|++|. +..+|. .+..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----GVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----hhcccCCCcCEEECCCCc-CCccChhHhCcchhh
Confidence 4556666666666654 3345556666666666655432111 112346677777777763 445544 45778888
Q ss_pred CEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEeccccccc
Q 003321 696 KNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVS 753 (830)
Q Consensus 696 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~ 753 (830)
++|+|++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|+.|++++|+.
T Consensus 115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 888888865 56788888888888888888864 44454 4577888888888887653
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.23 E-value=1e-12 Score=152.39 Aligned_cols=272 Identities=14% Similarity=0.071 Sum_probs=164.8
Q ss_pred ceEEEeeeCCccccc--ccccCCCceEEEEeeCccC-cccccChhhhhcccCceEEEccccCCccccCCCC-CCCCcccc
Q 003321 545 AQIVSIHTGDMREMD--WFRMEFPKAEVLILNFSST-EEYFLPPFIENMEKLRALIVINYSTSNAALGNFS-VCSNLTNL 620 (830)
Q Consensus 545 ~~~lsi~~~~~~~~~--~~~~~~~~~~~l~l~~~~~-~~~~lp~~i~~l~~Lr~L~l~~~~~~~~~~~~~~-~l~~l~~L 620 (830)
.+.+.+....+.... .+...+++++.|.+..+.. ....++..+.++++|++|++.++.........+. ....+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 556666654433222 1222578999999877632 2223556667899999999987764332222222 23477899
Q ss_pred Ceeeecccc--cC--ccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccc-----------------
Q 003321 621 RSLWLEKVS--IS--QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHC----------------- 679 (830)
Q Consensus 621 ~~L~L~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------- 679 (830)
++|++++|. +. .++..+..+++|++|++.+|..... ++.....+++|+.|++.+|
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 999999886 22 2222234569999999998733222 2222345677888875443
Q ss_pred --cccC-----------ccccccCCCCCCCEEEeeCcCCCCc--cchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCc
Q 003321 680 --DDLM-----------KLPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMKSLQILRLYACPHLRTLPARICELVCLK 744 (830)
Q Consensus 680 --~~l~-----------~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 744 (830)
..+. .+|..+..+++|++|++++|. +.. ++..+..+++|+.|++++|.....++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 2222 233333467899999999988 443 334467899999999998832223343445689999
Q ss_pred Eecccc--------ccccCc--chhhhccCCCCcEEeccCccCCccCCcccc-ccccCceeecC--c---hhhh------
Q 003321 745 YLNISQ--------CVSLSC--LPQGIGNLIRLEKIDMRECSQIWSLPKSVN-SLKSLRQVICE--E---DVSW------ 802 (830)
Q Consensus 745 ~L~L~~--------c~~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~l~~~--~---~~~~------ 802 (830)
+|++++ |+.+.. +......+++|+.|.+..+......+..+. .+++|+.|++. + +...
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 999944 334432 112223589999997766553333333343 57888888877 2 2222
Q ss_pred -hHHHHhhhCCCceeeeccc
Q 003321 803 -AWKDLEKTLPNLHVQVPAK 821 (830)
Q Consensus 803 -~~~~l~~~lp~L~~~~~~~ 821 (830)
....+...+|+|+.....+
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS
T ss_pred hHHHHHHhhCCCccEEeecC
Confidence 2334556788888776543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=6.3e-11 Score=113.45 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=96.5
Q ss_pred CCccceeccccccccCccccccCCC-CCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhh-cCCCCCcE
Q 003321 668 LPCLTELTFDHCDDLMKLPPSICGL-QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI-CELVCLKY 745 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp~~i~~l-~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~ 745 (830)
+++|+.|++++| .+..+|. +..+ ++|++|++++|. +..+ ..++.+++|++|++++|. +..+|+.+ +.+++|++
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 556777777776 3455654 4444 488888888875 4555 577888888888888865 45566444 78888888
Q ss_pred eccccccccCcchh--hhccCCCCcEEeccCccCCccCCcc----ccccccCceeecCchhhhhHHHHhhhCC
Q 003321 746 LNISQCVSLSCLPQ--GIGNLIRLEKIDMRECSQIWSLPKS----VNSLKSLRQVICEEDVSWAWKDLEKTLP 812 (830)
Q Consensus 746 L~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~l~~~~~~~~~~~~l~~~lp 812 (830)
|++++| .+..+|. .+..+++|+.|++++|+ +..+|.. +..+++|+.|+++.+...........++
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~ 163 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFK 163 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHh
Confidence 888885 4577776 68888888888888888 5677764 7788888888887775544433333333
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=9.9e-11 Score=113.74 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=71.2
Q ss_pred CeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEe
Q 003321 621 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 700 (830)
Q Consensus 621 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L 700 (830)
++++++++.+..+|..+.. +|++|++++|.+....+.. ....+++|++|++++|......|..++.+++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 6778888888888776543 6667776665543322111 1123555666666655433333555666666666666
Q ss_pred eCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEecccccc
Q 003321 701 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCV 752 (830)
Q Consensus 701 ~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~ 752 (830)
++|......|..+..+++|++|++++|......|..+..+++|++|+|++|+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6654332233345566666666666654444445555666666666666543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.7e-10 Score=112.02 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=76.3
Q ss_pred CeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEEEe
Q 003321 621 RSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 700 (830)
Q Consensus 621 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L 700 (830)
++++++++.+..+|..+. .+|++|++ ++| .+..+|..+.++++|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L----------------------------~~n-~i~~ip~~~~~l~~L~~L~L 61 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYL----------------------------DGN-QFTLVPKELSNYKHLTLIDL 61 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEEC----------------------------CSS-CCCSCCGGGGGCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEEC----------------------------CCC-cCchhHHHhhcccCCCEEEC
Confidence 567788888887776542 34444444 444 24455666666777777777
Q ss_pred eCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchh-hhccCCCCcEEeccCcc
Q 003321 701 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECS 776 (830)
Q Consensus 701 ~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 776 (830)
++|......+..+.++++|++|+|++|......|..+..+++|++|+|++| .+..+|. .+..+++|+.|++++|+
T Consensus 62 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 766533333345667777777777765543333445667777777777764 4445554 36667777777777766
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=1.7e-09 Score=109.52 Aligned_cols=180 Identities=9% Similarity=0.013 Sum_probs=113.4
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCC------------------ceEEEEe
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN------------------RILFLTV 244 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~------------------~~~wv~v 244 (830)
..++||+..++.+..++......+++.|+|++|+||||||+.+++.......+.. ..+.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecC
Confidence 3579999999999999976555568999999999999999999854221111100 0111111
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh----cCCCceEEEEec
Q 003321 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF----RVPGCKTLVVSR 318 (830)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~----~~~gs~iivTtr 318 (830)
.. .........++..+... ...+++.+||+||++. ...++.+.. ..++..+|+||+
T Consensus 103 ~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 103 AS-RTKVEDTRDLLDNVQYA-----------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp TC-GGGHHHHHHHHHSCCCS-----------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred cc-cccHHHHHHHHHHhhhc-----------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 11 01111112222221100 0135689999999975 344554443 234678888887
Q ss_pred ccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 319 FKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 319 ~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
..... .....+++++++.++..+++...+..... ...++....|++.|+|.|..+..+...+
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65322 22357899999999999999887643221 1224578899999999999988776544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=8.8e-11 Score=112.41 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCccccCeeeecccccCccCCCccccC-CCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCC
Q 003321 614 CSNLTNLRSLWLEKVSISQLPKSSIPLK-KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGL 692 (830)
Q Consensus 614 l~~l~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l 692 (830)
+.++.+|+.|++++|.+..+|. +..+. +|++|++++|.+ ..+ ..++.+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l-----------------------------~~~-~~l~~l 63 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI-----------------------------RKL-DGFPLL 63 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC-----------------------------CEE-CCCCCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCC-----------------------------Ccc-cccccC
Confidence 3456677778888777776643 33322 555555554432 223 345556
Q ss_pred CCCCEEEeeCcCCCCccchhc-CCCCCCCEEEcccCCCCCccch--hhcCCCCCcEeccccccccCcchhh----hccCC
Q 003321 693 QSLKNLSVTNCHSLQELPADI-GKMKSLQILRLYACPHLRTLPA--RICELVCLKYLNISQCVSLSCLPQG----IGNLI 765 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~L~~c~~l~~lp~~----l~~l~ 765 (830)
++|++|++++|. +..+|..+ +.+++|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. +..++
T Consensus 64 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 64 RRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVP 140 (176)
T ss_dssp SSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCT
T ss_pred CCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCC
Confidence 666666666654 44455333 566666666666653 355554 56666677777776643 3455553 66677
Q ss_pred CCcEEeccCcc
Q 003321 766 RLEKIDMRECS 776 (830)
Q Consensus 766 ~L~~L~l~~~~ 776 (830)
+|+.|++++|.
T Consensus 141 ~L~~Ld~~~n~ 151 (176)
T 1a9n_A 141 QVRVLDFQKVK 151 (176)
T ss_dssp TCSEETTEECC
T ss_pred ccceeCCCcCC
Confidence 77777777665
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=2.1e-10 Score=111.47 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=87.6
Q ss_pred ceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc--ccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCE
Q 003321 644 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP--SICGLQSLKNLSVTNCHSLQELPADIGKMKSLQI 721 (830)
Q Consensus 644 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 721 (830)
++++++++.+.. ++..+ .++|+.|++++|. +..+|. .++.+++|++|+|++|......|..++.+++|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~------~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI------PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSS-CCSCC------CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCc-CccCC------CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 567777665432 22221 3478888888874 555554 3778888888888887654444677888888888
Q ss_pred EEcccCCCCCccchhhcCCCCCcEeccccccccCcchhhhccCCCCcEEeccCccCC
Q 003321 722 LRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQI 778 (830)
Q Consensus 722 L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~l~~~~~l 778 (830)
|++++|......|..+..+++|++|+|++|......|..+..+++|+.|++++|+..
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888886654444455778888888888886544455667788888888888888743
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=5.6e-10 Score=108.40 Aligned_cols=122 Identities=19% Similarity=0.290 Sum_probs=99.5
Q ss_pred ceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccc
Q 003321 672 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 751 (830)
Q Consensus 672 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c 751 (830)
+.++++++ .+..+|..+. ++|++|++++|. +..+|..+..+++|+.|++++|......|..+..+++|++|+|++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666665 4778887653 689999999975 6789999999999999999997755555567999999999999996
Q ss_pred cccCcch-hhhccCCCCcEEeccCccCCccCCc-cccccccCceeecCch
Q 003321 752 VSLSCLP-QGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVICEED 799 (830)
Q Consensus 752 ~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~~~ 799 (830)
. +..+| ..+..+++|+.|+|++|. +..+|. .+..+++|+.|++++|
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 5 55554 569999999999999998 666665 5788999999987766
No 143
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.07 E-value=3.9e-11 Score=104.21 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHhhhhhHHHHHhhCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 003321 11 IAAELLKMLISICRRSS-LCKSSAEQLRTTIEQLLPTIHEIKYSGVELP--PIRQTQLDHLSETLKDGIELCRKVLASTR 87 (830)
Q Consensus 11 ~~~~~~~~l~s~~~~~~-~~~~~~~~l~~~l~~~l~~i~~~~~~~~e~~--~~~~~~~~~~~~~l~~~~~~~~d~ld~~~ 87 (830)
+++.++.++.+++.+++ ...|+.+++ ++|+.+|.+|++++. +++.. +..+.+++.|++++||++||+||++|+|.
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i-~~Lk~eL~~m~a~L~-da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNI-EDLGKELESMNAALI-KIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHHHHH-HHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998 888899888 999999999999999 56655 56789999999999999999999999998
Q ss_pred hhh
Q 003321 88 WNV 90 (830)
Q Consensus 88 ~~~ 90 (830)
++.
T Consensus 80 ~~~ 82 (115)
T 3qfl_A 80 VQV 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 766
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.6e-09 Score=103.72 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=73.4
Q ss_pred cCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccc-ccCCCCCCCEE
Q 003321 620 LRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNL 698 (830)
Q Consensus 620 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L 698 (830)
.+.++++++++..+|..+. .+|+.|+++ +|. +..+|. .++.+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~----------------------------~n~-l~~~~~~~~~~l~~L~~L 57 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELE----------------------------SNK-LQSLPHGVFDKLTQLTKL 57 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECC----------------------------SSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeC----------------------------CCc-ccEeCHHHhcCcccccEE
Confidence 4677777777777775432 345555544 432 233332 34666777777
Q ss_pred EeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhh-hccCCCCcEEeccCcc
Q 003321 699 SVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMRECS 776 (830)
Q Consensus 699 ~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 776 (830)
++++|. +..+|. .++.+++|+.|++++|......+..+..+++|++|++++| .+..+|.. +..+++|+.|++++|+
T Consensus 58 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 58 SLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 777654 344443 3566777777777765433322333566777777777764 44555554 4667777777777776
Q ss_pred C
Q 003321 777 Q 777 (830)
Q Consensus 777 ~ 777 (830)
.
T Consensus 136 ~ 136 (177)
T 2o6r_A 136 W 136 (177)
T ss_dssp B
T ss_pred e
Confidence 3
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=1.4e-11 Score=120.51 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred ccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccch--hhcCCCCCcEeccccc
Q 003321 684 KLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA--RICELVCLKYLNISQC 751 (830)
Q Consensus 684 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~L~~c 751 (830)
.+|..++.+++|++|++++|. +..+| .++.+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 84 ~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 84 KIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 344444444555555555553 33344 34455555555555532 222222 3445555555555544
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.97 E-value=1.8e-08 Score=100.32 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=112.2
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++.. ....+....+.++.+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhc
Confidence 35789999999999998753 33348999999999999999998531 12223333334444444444443333322211
Q ss_pred CCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhh---h-cCCCceEEEEecccccc-----cccceEEc
Q 003321 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKFST-----VLNDTYEV 331 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtr~~~~~-----~~~~~~~l 331 (830)
... ...+++.+||+||++.. ...+.+. . ..++.++|+||+..... .....+++
T Consensus 95 -~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 95 -TAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp -SCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred -ccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 100 01357889999999853 3333332 2 34567888888765321 22347899
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 003321 332 ELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 332 ~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
++++.++..+++...+..... ...++....+++.++|.|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999877642221 12245778899999999996554433
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=5.6e-09 Score=99.87 Aligned_cols=123 Identities=24% Similarity=0.369 Sum_probs=95.6
Q ss_pred cceeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEecc
Q 003321 671 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNI 748 (830)
Q Consensus 671 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L 748 (830)
.+.++++++ .+..+|..+ .++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 345666655 467777544 4799999999987 45555 457899999999999975 455554 4789999999999
Q ss_pred ccccccCcchh-hhccCCCCcEEeccCccCCccCCcc-ccccccCceeecCchh
Q 003321 749 SQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKS-VNSLKSLRQVICEEDV 800 (830)
Q Consensus 749 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~l~~~~~~ 800 (830)
++| .++.+|. .+..+++|+.|++++|. +..+|.. +..+++|+.|++++|.
T Consensus 84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 996 4556655 47899999999999998 5677765 5789999999988774
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=7.1e-11 Score=115.51 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=55.7
Q ss_pred CCCccceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEe
Q 003321 667 TLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYL 746 (830)
Q Consensus 667 ~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 746 (830)
.+++|++|++++|. +..+| .++.+++|++|++++|. +..+|..+..+++|+.|++++| .+..+| .++.+++|++|
T Consensus 46 ~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEE
Confidence 35556666665552 34455 55555666666666554 3455554545556666666554 233344 35555566666
Q ss_pred ccccccccCcchh--hhccCCCCcEEeccCcc
Q 003321 747 NISQCVSLSCLPQ--GIGNLIRLEKIDMRECS 776 (830)
Q Consensus 747 ~L~~c~~l~~lp~--~l~~l~~L~~L~l~~~~ 776 (830)
++++| .+..+|. .+..+++|+.|++++|+
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 66553 3344332 45555666666666655
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=8.2e-09 Score=98.18 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=73.0
Q ss_pred ceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchh-hcCCCCCcEecccc
Q 003321 672 TELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNISQ 750 (830)
Q Consensus 672 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~L~~ 750 (830)
+.++++++ .+..+|..+. ++|++|+|++|......|..++.+++|++|+|++| .+..+|.. +..+++|++|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 44555554 4567776554 77888888887644434567778888888888876 45556554 57788888888887
Q ss_pred ccccCcchhh-hccCCCCcEEeccCccCCccCCc
Q 003321 751 CVSLSCLPQG-IGNLIRLEKIDMRECSQIWSLPK 783 (830)
Q Consensus 751 c~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~ 783 (830)
| .+..+|.. +..+++|+.|+|++|+ +...|.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 4 55666654 7788888888888887 444443
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=8.7e-08 Score=101.38 Aligned_cols=179 Identities=12% Similarity=0.112 Sum_probs=111.4
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|++..++.+.+++... ..+.+.++|++|+||||+|+.+++... ...+...+++++.+...+...+. .++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVVR-NQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHHH-HHHHHHH
Confidence 45789999999999998754 333489999999999999999985311 22222233344444433433332 2222221
Q ss_pred CCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh--HhHHHhh---h-cCCCceEEEEecccccc-----cccceEE
Q 003321 263 GCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKFST-----VLNDTYE 330 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtr~~~~~-----~~~~~~~ 330 (830)
.... .. .+++.+||+||++.. ..++.+. . ..+++.+|+||+..... .....++
T Consensus 98 ~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 98 QKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 0000 01 346889999999853 3333333 2 23567888888654321 2235799
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHH-HHHHHHH
Q 003321 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA-LKVIGAS 382 (830)
Q Consensus 331 l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~~ 382 (830)
+++++.++..+++...+..... ...++....+++.++|.|.. +..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999876532211 12245778999999999954 4555443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=2e-08 Score=95.12 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=69.4
Q ss_pred cceeccccccccCccccccCCCCCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccc
Q 003321 671 LTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNIS 749 (830)
Q Consensus 671 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~ 749 (830)
.+.++++++ .+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|. +..+|. .+..+++|++|+|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 355666665 4666776553 778888888876433335667788888888888764 445554 35778888888888
Q ss_pred cccccCcchh-hhccCCCCcEEeccCcc
Q 003321 750 QCVSLSCLPQ-GIGNLIRLEKIDMRECS 776 (830)
Q Consensus 750 ~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 776 (830)
+| .+..+|. .+..+++|+.|+|++|+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 75 4556655 37788888888888887
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=5.2e-09 Score=111.14 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=50.8
Q ss_pred CCceEEEEeeCccCcccccChhhhh-cccCceEEEccccCC--ccccC---------------CCCCCCC--------cc
Q 003321 565 FPKAEVLILNFSSTEEYFLPPFIEN-MEKLRALIVINYSTS--NAALG---------------NFSVCSN--------LT 618 (830)
Q Consensus 565 ~~~~~~l~l~~~~~~~~~lp~~i~~-l~~Lr~L~l~~~~~~--~~~~~---------------~~~~l~~--------l~ 618 (830)
+++++.|.+...-. ...+ ..+.. +++|++|++.++... ..... .-..|.+ ++
T Consensus 24 ~~~l~~L~l~g~i~-~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEEEC-HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecccc-HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 34556666543211 0111 22334 778999999877544 10000 0123556 78
Q ss_pred ccCeeeecccccCccCCC-ccccCCCceEEeeecccc
Q 003321 619 NLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKIN 654 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~ 654 (830)
+|+.|+|.+ .+..+++. +..+.+|+.+++..+.+.
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 888888887 77777654 667888888888876654
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=3.8e-08 Score=104.43 Aligned_cols=196 Identities=13% Similarity=0.024 Sum_probs=108.0
Q ss_pred cccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCCC-ccccCCCceEEeeeccccccccccccCcCCCC
Q 003321 590 MEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTL 668 (830)
Q Consensus 590 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 668 (830)
+++|+.|.+.+ ..... .-..|.++++|+.|++.++.+..++.. +..+.++..+.+...................+
T Consensus 100 ~~~L~~l~L~~-~i~~I---~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNI---EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEE---CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccch---hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999998865 32221 123578899999999999998877764 44555555554432111000000000000112
Q ss_pred Cccc--------------------------eeccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCE
Q 003321 669 PCLT--------------------------ELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQI 721 (830)
Q Consensus 669 ~~L~--------------------------~L~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~ 721 (830)
..|+ .+.+.+.-...........+++|+.|+|++|. +..+| ..|.++.+|+.
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCE
Confidence 2222 22222210000000000125777777777654 55555 35677777777
Q ss_pred EEcccCCCCCccch-hhcCCCCCc-EeccccccccCcch-hhhccCCCCcEEeccCccCCccCCc-cccccccCceee
Q 003321 722 LRLYACPHLRTLPA-RICELVCLK-YLNISQCVSLSCLP-QGIGNLIRLEKIDMRECSQIWSLPK-SVNSLKSLRQVI 795 (830)
Q Consensus 722 L~l~~~~~l~~lp~-~~~~l~~L~-~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~ 795 (830)
|++.++ +..++. .|..+++|+ .|++.+ .++.++ ..|.++++|+.|+++++. +..++. .+.++++|+.++
T Consensus 255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 777764 555553 466777777 777765 455554 347777777877777666 444443 566777777764
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=6.9e-08 Score=91.41 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=62.9
Q ss_pred ccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCCCCCCCEE
Q 003321 619 NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNL 698 (830)
Q Consensus 619 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 698 (830)
..+.++++++.+..+|..+. .+|++|++++|.+. ...|..+..+++|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~----------------------------~~~~~~~~~l~~L~~L 59 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQIT----------------------------KLEPGVFDRLTQLTRL 59 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC----------------------------CCCTTTTTTCTTCSEE
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCC----------------------------ccChhhhcCcccCCEE
Confidence 45788889888888886653 55555555544332 2224456666777777
Q ss_pred EeeCcCCCCccch-hcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEecccccc
Q 003321 699 SVTNCHSLQELPA-DIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCV 752 (830)
Q Consensus 699 ~L~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~ 752 (830)
+|++|. +..+|. .+..+++|++|+|++|. +..+|. .+..+++|++|+|++|+
T Consensus 60 ~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 60 DLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777664 444443 34667777777777654 344443 46677777777777643
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.66 E-value=9.6e-07 Score=93.31 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=106.1
Q ss_pred ccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..++|++..+..+..++.. ......+.|+|++|+|||++|+.+++. .. ..+.+++.+......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~----~~~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LG----VNLRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HT----CCEEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hC----CCEEEEeccccCChHHHHHH--
Confidence 3578999888888888752 134567889999999999999999853 22 22334544433333332221
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH--hHHHhhh----c------------------CCCceEE
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIF----R------------------VPGCKTL 314 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~----~------------------~~gs~ii 314 (830)
+.. ...+..+|+||+++... ....+.. . .++..+|
T Consensus 84 --l~~-------------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 84 --LAN-------------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp --HTT-------------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred --HHH-------------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111 01345689999998642 2222221 1 1235566
Q ss_pred EEecccccc------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 315 VVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 315 vTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
.||...... .....+.+++++.++...++...+..... ...++....++++++|.|-.+.-+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666543211 22357899999999999999887643221 1234578899999999998877665544
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=8.5e-08 Score=91.08 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=84.5
Q ss_pred CCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcchhh-hccCCCCcEEecc
Q 003321 695 LKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG-IGNLIRLEKIDMR 773 (830)
Q Consensus 695 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~l~ 773 (830)
-+.++++++. +..+|..+. ++|+.|++++|......|..++.+++|++|+|++| .+..+|.. +..+++|+.|+|+
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 3688998864 788998775 89999999997755555778999999999999995 67778766 5899999999999
Q ss_pred CccCCccCCcc-ccccccCceeecCchh
Q 003321 774 ECSQIWSLPKS-VNSLKSLRQVICEEDV 800 (830)
Q Consensus 774 ~~~~l~~lp~~-~~~l~~L~~l~~~~~~ 800 (830)
+|. +..+|.. +..+++|+.|++++|.
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 998 6677764 8899999999988773
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=5.4e-07 Score=95.40 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=108.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+++... ...+...++.++.+.......+...+ ....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 101 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVIREKV-KEFA 101 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTTHHHH-HHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHHHHHH-HHHH
Confidence 34789999999999888653 444589999999999999999985311 11221122233322211111111111 1110
Q ss_pred CCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhh---h-cCCCceEEEEecccccc-----cccceEEc
Q 003321 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKFST-----VLNDTYEV 331 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtr~~~~~-----~~~~~~~l 331 (830)
.... ...+++.++|+||++.. +.++.+. . ..+++++|+||...... .....+++
T Consensus 102 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 102 RTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred hhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 0000 01256889999999853 3344443 2 23467888887654321 22347899
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHh
Q 003321 332 ELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (830)
Q Consensus 332 ~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 383 (830)
++++.++...++...+..... ...++....|++.++|.|..+..+...+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999877643321 1234578889999999998765544433
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=6.1e-08 Score=103.26 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=9.2
Q ss_pred CCCccccCeeeeccc
Q 003321 614 CSNLTNLRSLWLEKV 628 (830)
Q Consensus 614 l~~l~~L~~L~L~~~ 628 (830)
...+++|+.|.+...
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 345667777776543
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=3.1e-07 Score=98.21 Aligned_cols=100 Identities=20% Similarity=0.170 Sum_probs=56.8
Q ss_pred ccccccccCccccccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccchhhcCCCCCcEeccccccc
Q 003321 675 TFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVS 753 (830)
Q Consensus 675 ~l~~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~ 753 (830)
+.+++..+..+|. +..+++|++|+|+++..+..+| ..|+.|++|+.|+|++|......|..|..|++|++|+|++| .
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 3444324556666 6666667777776522344444 45666777777777665433333345666677777777663 4
Q ss_pred cCcchhhhccCCCCcEEeccCcc
Q 003321 754 LSCLPQGIGNLIRLEKIDMRECS 776 (830)
Q Consensus 754 l~~lp~~l~~l~~L~~L~l~~~~ 776 (830)
+..+|..+.....|+.|+|.+|+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 55555443322236777776665
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.7e-06 Score=89.42 Aligned_cols=161 Identities=12% Similarity=0.102 Sum_probs=102.1
Q ss_pred cccccchhhHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHhccccccc------ccCCceEEEEecCCCCHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTS------YFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~------~F~~~~~wv~v~~~~~~~~l~ 254 (830)
.+.||+.+.+++...|.. ....+.+-|+|++|+|||++|+.|++.-.-.. .| .++.++.....+...+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~--~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF--DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE--EEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce--EEEEEeccccCCHHHHH
Confidence 468999999999988854 36778899999999999999999996432111 23 23456655667788899
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHHHhh---cCCcEEEEEeCCCCh---HhHHHhhh--cCCCceEE--EEeccc-ccc
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVWSL---AVLEQLIF--RVPGCKTL--VVSRFK-FST 323 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l---~~kr~LlVlDdv~~~---~~~~~l~~--~~~gs~ii--vTtr~~-~~~ 323 (830)
..|++++.+... ........+...+... .++++++|||+++.. +.+-.+.. ..++++++ .++... ...
T Consensus 99 ~~I~~~L~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 99 EKIWFAISKENL-CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHhcCCCC-CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 999999966432 1122223334444432 567899999999864 33333321 23444433 333322 111
Q ss_pred ---------cc-cceEEccCCCHHHHHHHHHHHh
Q 003321 324 ---------VL-NDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 324 ---------~~-~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
.. ...+..++.+.+|-.+++..++
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 11 2468899999999999987765
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=8.6e-08 Score=102.12 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=33.6
Q ss_pred cChhhhhcccCceEEEccccCCccc-----cCCC-CCCCCccccCeeeecccccCccCCCccccCCCceEEeeecc
Q 003321 583 LPPFIENMEKLRALIVINYSTSNAA-----LGNF-SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCK 652 (830)
Q Consensus 583 lp~~i~~l~~Lr~L~l~~~~~~~~~-----~~~~-~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~ 652 (830)
+..++.++++|+.|.+.+....... ...+ ..+..+|+|+.|+|+++.-..++. + .+++|++|++..|.
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence 3445678889999988553211000 0011 123445666666666552123332 2 24555666555443
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=1.7e-08 Score=108.63 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=31.6
Q ss_pred cccCceEEEccccCCccccCCCC-CC-CCccccCeeeecccccCc--cCCCccccCCCceEEeeeccc
Q 003321 590 MEKLRALIVINYSTSNAALGNFS-VC-SNLTNLRSLWLEKVSISQ--LPKSSIPLKKMQKISFVLCKI 653 (830)
Q Consensus 590 l~~Lr~L~l~~~~~~~~~~~~~~-~l-~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~ 653 (830)
+++|+.|++.++.........+. .+ .+.++|++|+|++|.+.. +..-...+.+|++|+|++|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 45677777776654332211111 11 123567777777776642 111122344566666665544
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=5.1e-07 Score=96.46 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=79.9
Q ss_pred EEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEeccccccccCcch-hhhccCCCCcEEeccC
Q 003321 697 NLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKIDMRE 774 (830)
Q Consensus 697 ~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l~~L~~L~l~~ 774 (830)
.++.+++..+..+|. ++.+++|+.|+|++++.+..+| ..|+.|++|++|+|++| .+..+| ..|.+|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 467777546888999 9999999999999755666666 57999999999999996 455554 4689999999999999
Q ss_pred ccCCccCCccccccccCceeecCch
Q 003321 775 CSQIWSLPKSVNSLKSLRQVICEED 799 (830)
Q Consensus 775 ~~~l~~lp~~~~~l~~L~~l~~~~~ 799 (830)
|. +..+|..+.....|+.|++.+|
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred Cc-cceeCHHHcccCCceEEEeeCC
Confidence 98 6777765544444999987665
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=8.5e-09 Score=110.89 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=94.7
Q ss_pred ccccCeeeecccccCcc-----CCCcc-ccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCc----cc
Q 003321 617 LTNLRSLWLEKVSISQL-----PKSSI-PLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMK----LP 686 (830)
Q Consensus 617 l~~L~~L~L~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----lp 686 (830)
+++|++|+|++|.+... ...+. ...+|++|+|++|.+...... .+...+++|+.|+|++|..... +.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR---TLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH---HTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH---HHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 35677888888877632 11222 125788888887765432111 1112355778888888742211 11
Q ss_pred ccc-CCCCCCCEEEeeCcCCCC----ccchhcCCCCCCCEEEcccCCCCC----ccchhhcCCCCCcEeccccccccC--
Q 003321 687 PSI-CGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPHLR----TLPARICELVCLKYLNISQCVSLS-- 755 (830)
Q Consensus 687 ~~i-~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~L~~c~~l~-- 755 (830)
..+ ...++|++|+|++|.... .++..+..+++|++|+|++|.... .++..+...++|++|+|++|....
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 222 245678888888875321 244555677788888888875322 234556677788888888864322
Q ss_pred --cchhhhccCCCCcEEeccCccC
Q 003321 756 --CLPQGIGNLIRLEKIDMRECSQ 777 (830)
Q Consensus 756 --~lp~~l~~l~~L~~L~l~~~~~ 777 (830)
.++..+...++|++|+|++|..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCC
Confidence 3444556678888888888873
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.40 E-value=4.1e-06 Score=90.37 Aligned_cols=186 Identities=9% Similarity=-0.014 Sum_probs=105.4
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.++|++..++.+...+........+.|+|++|+||||+|+.+++.......+... ... .... ...+......
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~----~~~---~~~~-~~~~~~~~~~ 88 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT----PCG---VCDN-CREIEQGRFV 88 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS----CCS---SSHH-HHHHHTSCCS
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC----CCc---ccHH-HHHHhccCCC
Confidence 4799999999999998765555688999999999999999998532211111000 000 0000 0111100000
Q ss_pred CC---CCCCCCCcccchHHHHhh-----cCCcEEEEEeCCCCh--HhHHHhh---hcC-CCceEEEEeccccc-c----c
Q 003321 264 CD---SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLI---FRV-PGCKTLVVSRFKFS-T----V 324 (830)
Q Consensus 264 ~~---~~~~~~~~~~~~~~~~~l-----~~kr~LlVlDdv~~~--~~~~~l~---~~~-~gs~iivTtr~~~~-~----~ 324 (830)
.. ........+......... .+++.+||+||++.. ..++.+. ... ++..+|++|..... . .
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 00 000001111222222222 356789999999743 3344443 233 35666767654331 1 2
Q ss_pred ccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 325 LNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 325 ~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
....+++++++.++..+++...+-..+. ...++....|++.++|.|..+..+.
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3357899999999999998866522111 1224567889999999998876554
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=6.3e-06 Score=89.34 Aligned_cols=174 Identities=13% Similarity=0.178 Sum_probs=101.1
Q ss_pred CCCCCccccCeeeecccccCccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCccccccCC
Q 003321 612 SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG 691 (830)
Q Consensus 612 ~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i~~ 691 (830)
..|.++++|+.+++.++.+..++.......+|+.+.+..+ +.. + ....+..+++|+.+.+..+ +..++.....
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~-I---~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~ 246 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKE-I---GSQAFLKTSQLKTIEIPEN--VSTIGQEAFR 246 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCE-E---CTTTTTTCTTCCCEECCTT--CCEECTTTTT
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hhe-e---hhhHhhCCCCCCEEecCCC--ccCccccccc
Confidence 3467788888888888888888877666778888877532 111 1 1122345677777777652 4445433222
Q ss_pred CCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCC----Ccc-chhhcCCCCCcEeccccccccCcchh-hhccC
Q 003321 692 LQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHL----RTL-PARICELVCLKYLNISQCVSLSCLPQ-GIGNL 764 (830)
Q Consensus 692 l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l----~~l-p~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l 764 (830)
-.+|+.+.|.. .+..++ ..+.++++|+.+.+.++... ..+ +..|..+++|+.+.|.+ .+..++. .+.++
T Consensus 247 ~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c 322 (401)
T 4fdw_A 247 ESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGN 322 (401)
T ss_dssp TCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTC
T ss_pred cCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCC
Confidence 26677777743 244443 45666777777777653321 122 23466666777777663 3444443 35566
Q ss_pred CCCcEEeccCccCCccCC-ccccccccCceeecCch
Q 003321 765 IRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 799 (830)
Q Consensus 765 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~ 799 (830)
++|+.+.|..+ +..++ ..+.++ +|+.+.+.++
T Consensus 323 ~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 323 RKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 66666666443 33333 345556 6666666554
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.33 E-value=2.6e-05 Score=82.80 Aligned_cols=240 Identities=16% Similarity=0.144 Sum_probs=133.1
Q ss_pred ccccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..++|++..++.+..++.. ......|.|+|++|+|||++|+.+++. ....| ..++.+.......+...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~----~~~~~~~~~~~~~~~~~~- 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI----KTTAAPMIEKSGDLAAIL- 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE----EEEEGGGCCSHHHHHHHH-
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe----EEecchhccchhHHHHHH-
Confidence 4579999999998888854 245567899999999999999999843 22222 234333222222221111
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-------------------CCCceEE
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-------------------VPGCKTL 314 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-------------------~~gs~ii 314 (830)
. . ..+..+|+||+++.. .....+.. . .|+..+|
T Consensus 102 ~----------------------~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 102 T----------------------N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp H----------------------T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred H----------------------h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1 0 245678999999853 22222221 1 1124555
Q ss_pred EEecccccc------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHHhc----
Q 003321 315 VVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR---- 384 (830)
Q Consensus 315 vTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~---- 384 (830)
.+|...... .....+.+++++.++...++...+-... ....++....+++.+.|.|-.+..+...+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN---KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFAD 235 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555443211 2336799999999999999987663221 122355788899999999965544433221
Q ss_pred --CC---ChHHHHHHHHHhccCCCCcccchhhHHHHHHHhHhcCChhHHHHHhhhCCCCCCCccCHHHHHHHHHHhcCCC
Q 003321 385 --EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLD 459 (830)
Q Consensus 385 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wia~~~~~ 459 (830)
+. +......++.. +..+...++...+..+..++-. .+..+....+... -++.
T Consensus 236 ~~~~~~i~~~~~~~~~~~------------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~----lg~~ 292 (338)
T 3pfi_A 236 VNDEEIITEKRANEALNS------------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA----LSED 292 (338)
T ss_dssp HTTCSEECHHHHHHHHHH------------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH----TTCC
T ss_pred hhcCCccCHHHHHHHHHH------------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH----hCCC
Confidence 11 11222222221 2223334444445555444444 4444555444332 2455
Q ss_pred HHHHHHHHH-HHhhhhhHHH
Q 003321 460 EEEAFAILV-ELSDRNLLKI 478 (830)
Q Consensus 460 ~~~~~~~l~-~L~~r~l~~~ 478 (830)
......+++ .|++.+++..
T Consensus 293 ~~tl~~~l~~~l~~~gli~~ 312 (338)
T 3pfi_A 293 ENTIEDVIEPYLLANGYIER 312 (338)
T ss_dssp HHHHHHTTHHHHHHTTSEEE
T ss_pred HHHHHHHHhHHHHHcCceec
Confidence 556665665 5666666654
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.29 E-value=6.1e-06 Score=86.84 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=104.5
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++.-. ...+...++.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 89 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI----- 89 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHHH-----
T ss_pred HHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHHH-----
Confidence 34789999999988888643 333489999999999999999985311 11222222234433321111110000
Q ss_pred CCCCCCCCCCcccchHHHHh--h-cCCcEEEEEeCCCCh--HhHHHhhh---cC-CCceEEEEecccccc-----cccce
Q 003321 263 GCDSMEPNYVIPHWNLQIQS--K-LGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSRFKFST-----VLNDT 328 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~--l-~~kr~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtr~~~~~-----~~~~~ 328 (830)
...... . .+++.++|+|+++.. +..+.+.. .. +++++|+||...... .....
T Consensus 90 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 90 --------------KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp --------------HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred --------------HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 000000 1 256889999999753 33444433 22 356777777554311 22357
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
+++++++.++..+++...+-.... ...++....+++.++|.|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999877643221 1234577889999999988654433
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=4.9e-06 Score=93.54 Aligned_cols=184 Identities=15% Similarity=0.085 Sum_probs=105.6
Q ss_pred ccccccchhhHHHHHHHhcC----------------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 183 LMGIGMALGKNKVKEMVIGR----------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~----------------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
..++|++..++++.+++... ...+.+.|+|++|+||||+|+.+++.. ...++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l------~~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT------TCEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeCCC
Confidence 45799999999999998641 134789999999999999999999532 22333455554
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--------HhHHHhhhcCCCceEEEEec
Q 003321 247 SPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--------AVLEQLIFRVPGCKTLVVSR 318 (830)
Q Consensus 247 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--------~~~~~l~~~~~gs~iivTtr 318 (830)
...... ....+.......... ........ .....+++.+||+|+++.. ..+..+... .+..||+++.
T Consensus 113 ~~~~~~-~~~~i~~~~~~~~~~--~~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKTL-LNAGVKNALDNMSVV--GYFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICN 187 (516)
T ss_dssp CCCHHH-HHHTGGGGTTBCCST--TTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEES
T ss_pred cchHHH-HHHHHHHHhccccHH--HHHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEc
Confidence 444332 222222221111000 00000000 0012467889999999743 223333322 3445666554
Q ss_pred cccc---c---cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHHH
Q 003321 319 FKFS---T---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIG 380 (830)
Q Consensus 319 ~~~~---~---~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 380 (830)
.... . .....+++++++.++..+.+...+...... ..++....|++.++|. +-++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~---i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK---LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4321 1 223568999999999999887766432211 1123677899999994 45555553
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=1.9e-05 Score=84.39 Aligned_cols=187 Identities=12% Similarity=0.125 Sum_probs=107.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|++..++.+..++... ....+.++|++|+||||+|+.+.+.......+...+..++.+.......+...+ ....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV-KNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH-HHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH-HHHh
Confidence 35789999999999888643 223389999999999999999985422111233333344444433333332222 2111
Q ss_pred CCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh--HhHHHhh---h-cCCCceEEEEecccccc-----cccceEE
Q 003321 263 GCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL--AVLEQLI---F-RVPGCKTLVVSRFKFST-----VLNDTYE 330 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~--~~~~~l~---~-~~~gs~iivTtr~~~~~-----~~~~~~~ 330 (830)
...... .. ....... .+++-+|++|+++.. .....+. . ..+..++|++|...... .....++
T Consensus 115 ~~~~~~---~~---~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLTVSK---PS---KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSCCCC---CC---TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhcccc---cc---hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 110000 00 0001111 245679999998743 2233332 2 23456777776543211 2224788
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 331 VELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 331 l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
+++++.++....+...+-.... ...++....|++.++|.|-.+..+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998876533221 1224578899999999998755443
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=5e-05 Score=82.23 Aligned_cols=198 Identities=7% Similarity=0.085 Sum_probs=136.4
Q ss_pred hhhhhcccCceEEEccccCCccccCCCCCCCCccccCeeeecccccCccCC-CccccCCCceEEeeeccccccccccccC
Q 003321 585 PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPK-SSIPLKKMQKISFVLCKINNSLDQSVVD 663 (830)
Q Consensus 585 ~~i~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 663 (830)
.+|.++.+|+.+.+.++......... |. ..+|+.+.|..+ +..++. .+..+.+|+.+.+..+ +. .+...
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~a---F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~--- 243 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPAST---FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQE--- 243 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTT---TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTT---
T ss_pred HHhhCcccCCeeecCCCcceEechhh---Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccc---
Confidence 56889999999999765443332222 33 478999999744 776665 4677899999998753 11 11111
Q ss_pred cCCCCCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCC----Cccc-hhcCCCCCCCEEEcccCCCCCccc-hh
Q 003321 664 LPKTLPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSL----QELP-ADIGKMKSLQILRLYACPHLRTLP-AR 736 (830)
Q Consensus 664 ~~~~~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l----~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~ 736 (830)
.+.. .+|+.+.+.. .+..++ ..+.++++|+.+.+.++... ..++ ..+.++++|+.+.+.. .+..++ ..
T Consensus 244 aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 244 AFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp TTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 1222 5788888854 356664 56789999999999885432 1243 5788899999999984 366665 45
Q ss_pred hcCCCCCcEeccccccccCcchh-hhccCCCCcEEeccCccCCccCCcccccc-ccCceeecCchh
Q 003321 737 ICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKSVNSL-KSLRQVICEEDV 800 (830)
Q Consensus 737 ~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~l-~~L~~l~~~~~~ 800 (830)
|..+++|+.+.|.. ++..++. .+.++ +|+.+++.+|......+..+..+ .++..+.+..+.
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 78899999999965 3666654 47888 99999999987333333455666 467888877653
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=4.5e-06 Score=80.41 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=37.8
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++||+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999864 44566789999999999999999853
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=3.8e-06 Score=78.28 Aligned_cols=86 Identities=10% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCCCEEEeeCcCCCCccchhcCCCCCCCEEEcccCCCCCcc-chhhcCC----CCCcEeccccccccCcc-hhhhccCCC
Q 003321 693 QSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTL-PARICEL----VCLKYLNISQCVSLSCL-PQGIGNLIR 766 (830)
Q Consensus 693 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~l----~~L~~L~L~~c~~l~~l-p~~l~~l~~ 766 (830)
.+|+.||+++|.....-...+..+++|++|+|++|..++.- -..+..+ ++|++|+|++|..++.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46788888887633332345677888888888888765432 1234443 36888888888776642 123566788
Q ss_pred CcEEeccCccCC
Q 003321 767 LEKIDMRECSQI 778 (830)
Q Consensus 767 L~~L~l~~~~~l 778 (830)
|++|+|++|+.+
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 888888887643
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=3.7e-05 Score=82.13 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=100.6
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---cccc-ccC-------------------Cce
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTS-YFN-------------------NRI 239 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~-~F~-------------------~~~ 239 (830)
..++|.+...+.+.+++........+.|+|++|+||||+|+.++..- .... .++ ...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 34688888888888887233333339999999999999999887521 1000 000 001
Q ss_pred EEEEecCCC-CHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhh----hcCCCce
Q 003321 240 LFLTVSQSP-NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI----FRVPGCK 312 (830)
Q Consensus 240 ~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~----~~~~gs~ 312 (830)
+.+..+... ......+.++..+......... . .+..+.+++-++|||++... +..+.+. ...++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~-----~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ--D-----SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcccccc--c-----cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 111111100 0000122223322111100000 0 00001346779999999863 2222222 2334778
Q ss_pred EEEEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchh-HHHHHHHHHHcCCchHHHHHHHH
Q 003321 313 TLVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSAN-ENLVKQIVKKCKGLPLALKVIGA 381 (830)
Q Consensus 313 iivTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~-~~~~~~i~~~c~GlPLai~~~~~ 381 (830)
+|++|...... .....+++++++.++..+.+...+-..+. ... ++....|++.++|.+-.+..+..
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88877654321 23367899999999999998876632211 112 34678899999998876654443
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=4.2e-05 Score=78.92 Aligned_cols=169 Identities=16% Similarity=0.088 Sum_probs=95.7
Q ss_pred ccccccchhhHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 183 LMGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
..++|.+..++++.+.+... ...+-+.|+|++|+|||+||+.+++. ... .++.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~----~~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNA----TFIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTC----EEEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCC----CEEEEehHHHHH-
Confidence 45689999999988887421 35567999999999999999999853 222 222333222110
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh----------------HhHHHhhh------c
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL----------------AVLEQLIF------R 307 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~----------------~~~~~l~~------~ 307 (830)
.. .............. ...++.+|+||+++.. ..+..+.. .
T Consensus 90 -------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------KF---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------CS---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------hc---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00 00000111111111 2456789999999643 11222221 1
Q ss_pred CCCceEEEEecccccc--------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCC-chHHHHH
Q 003321 308 VPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKV 378 (830)
Q Consensus 308 ~~gs~iivTtr~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 378 (830)
..+..||.||...... .....+.++.++.++..++|...+......... ....++..+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHHH
Confidence 2345666676543221 123468899999999999998876433221111 24567777776 4434443
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.01 E-value=3.3e-05 Score=77.39 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=92.6
Q ss_pred hhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCC
Q 003321 190 LGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEP 269 (830)
Q Consensus 190 ~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 269 (830)
...+.+..++. ....+.+.|+|++|+||||||+.+++. .... ...+.|++.+..... +
T Consensus 38 ~~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~-~~~~~~~~~~~~~~~----------~-------- 95 (242)
T 3bos_A 38 ELIGALKSAAS-GDGVQAIYLWGPVKSGRTHLIHAACAR--ANEL-ERRSFYIPLGIHASI----------S-------- 95 (242)
T ss_dssp HHHHHHHHHHH-TCSCSEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEEGGGGGGS----------C--------
T ss_pred HHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEEHHHHHHH----------H--------
Confidence 33444555444 235678999999999999999999853 2222 123456665431110 0
Q ss_pred CCCcccchHHHHhhcCCcEEEEEeCCCChH--h--HHHhhh---c--CCCc-eEEEEeccccc------c------cccc
Q 003321 270 NYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--V--LEQLIF---R--VPGC-KTLVVSRFKFS------T------VLND 327 (830)
Q Consensus 270 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~--~~~l~~---~--~~gs-~iivTtr~~~~------~------~~~~ 327 (830)
....+.+ .++.+||+||++... . .+.+.. . ..+. ++|+||+.... . ....
T Consensus 96 -------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~ 167 (242)
T 3bos_A 96 -------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGL 167 (242)
T ss_dssp -------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSE
T ss_pred -------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCc
Confidence 0000111 346789999997431 1 222221 1 1133 47888765431 1 1126
Q ss_pred eEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 328 TYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 328 ~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
.+++++++.++..+++...+-.... ...++....+++.++|.+-.+.-+.
T Consensus 168 ~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 168 TYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 7899999999999999877632211 1234577889999999887665443
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3.3e-06 Score=78.70 Aligned_cols=102 Identities=9% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCCCEEEcccCCCCCccchhhcCCCCCcEeccccccccCcch-hhhccC----CCCcEEeccCccCCccC-Ccccccccc
Q 003321 717 KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP-QGIGNL----IRLEKIDMRECSQIWSL-PKSVNSLKS 790 (830)
Q Consensus 717 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~c~~l~~lp-~~l~~l----~~L~~L~l~~~~~l~~l-p~~~~~l~~ 790 (830)
.+|+.|++++|.....--..+..+++|++|+|++|..++.-- ..+..+ ++|++|+|++|..++.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999998544444567899999999999998877521 224443 47999999999866531 134667899
Q ss_pred CceeecCchhhhh-----HHHHhhhCCCceeee
Q 003321 791 LRQVICEEDVSWA-----WKDLEKTLPNLHVQV 818 (830)
Q Consensus 791 L~~l~~~~~~~~~-----~~~l~~~lp~L~~~~ 818 (830)
|+.|+++++...+ ...+...+|++++..
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 9999887775444 345678999999863
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.98 E-value=0.0002 Score=75.05 Aligned_cols=174 Identities=17% Similarity=0.147 Sum_probs=97.1
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+.+.. ....+-|.++|++|+|||+||+.+++... .. .++.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~----~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS----TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC----EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC----cEEEEEhHHHHh--
Confidence 3567888888888777631 12347889999999999999999995320 11 122333322110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-------------HhHHHhhh---c----CCC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AVLEQLIF---R----VPG 310 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-------------~~~~~l~~---~----~~g 310 (830)
.. ...........+... ..++.+|+||+++.. .....+.. + ..+
T Consensus 85 ------------~~---~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ------------KW---LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ------------SS---CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ------------hh---hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 001111112222222 467889999999854 11122221 1 123
Q ss_pred ceEEEEecccc-cc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHHHH
Q 003321 311 CKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIGA 381 (830)
Q Consensus 311 s~iivTtr~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 381 (830)
..||.||.... +. .....+.++..+.++-.+++..+.-.... ...+.....|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444554332 11 33457889999999999999877632211 11234678888999886 444554443
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.98 E-value=5.3e-05 Score=77.50 Aligned_cols=186 Identities=19% Similarity=0.162 Sum_probs=96.6
Q ss_pred ccccchhhHHHHH-------HHhc--CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHH
Q 003321 185 GIGMALGKNKVKE-------MVIG--RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 185 ~vgr~~~~~~l~~-------~L~~--~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
++|.....+++.. .+.. ....+.+.|+|++|+|||++|+.+++. ... ..+.++.+..
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~----~~~~i~~~~~-------- 100 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNF----PFIKICSPDK-------- 100 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTC----SEEEEECGGG--------
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCC----CEEEEeCHHH--------
Confidence 4565555555554 2321 345678899999999999999999953 221 2223332210
Q ss_pred HHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh------------HhHHHh---hhcC--CCc--eEEE
Q 003321 256 KVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL------------AVLEQL---IFRV--PGC--KTLV 315 (830)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~------------~~~~~l---~~~~--~gs--~iiv 315 (830)
+.+.. ...........+.. ...+..+|+||+++.. ..++.+ .... ++. .||.
T Consensus 101 -----~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -----MIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -----CTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -----hcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00000 00000011111111 2356789999998642 122322 2221 233 3555
Q ss_pred Eeccccc------c-cccceEEccCCCH-HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCC------chHHHHHHHH
Q 003321 316 VSRFKFS------T-VLNDTYEVELLRE-DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG------LPLALKVIGA 381 (830)
Q Consensus 316 Ttr~~~~------~-~~~~~~~l~~L~~-~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~G------lPLai~~~~~ 381 (830)
||..... . .....+++++++. ++-..++.... . ..++....+++.+.| ++-++.++-.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~----~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N----FKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C----SCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C----CCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 5554421 1 2245688888888 56666655421 1 123467788888877 4454555444
Q ss_pred HhcCCChHHHHHHHHHhcc
Q 003321 382 SLREQPEMYWTSAKKRLSK 400 (830)
Q Consensus 382 ~L~~~~~~~w~~~l~~l~~ 400 (830)
.........++.++..+..
T Consensus 245 a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHH
T ss_pred HhhhchHHHHHHHHHHHHH
Confidence 4433445667776666543
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.98 E-value=0.00016 Score=77.08 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=98.7
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+++.. ....+.|.|+|++|+|||+||+.+++. .. ..++.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~----~~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SG----ATFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TT----CEEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cC----CeEEEEehHHhhcc-
Confidence 3578999999998888742 234678999999999999999999853 22 22334444321110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------HhHHHhhh---c-----CC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLIF---R-----VP 309 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~~~~~l~~---~-----~~ 309 (830)
. .............. ...++.+|+||+++.. ..+..+.. + ..
T Consensus 157 -------------~---~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 157 -------------W---VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -------------S---TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -------------c---cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 00000011111111 1356789999999532 11222221 1 11
Q ss_pred CceEEEEecccc-cc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCC-chHHHHHHHH
Q 003321 310 GCKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGA 381 (830)
Q Consensus 310 gs~iivTtr~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 381 (830)
+..||.||.... +. .....+.++..+.++..+++...+-.... ...++....|++.+.| .+-.+..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334454554322 11 23356788999999999998776633221 1123467888999988 4555655544
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.94 E-value=0.00017 Score=75.91 Aligned_cols=168 Identities=16% Similarity=0.149 Sum_probs=99.7
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..++|.+..+..+.+++.......++.+.|++|+|||++|+.+++. .. ..++.++.+. .....+...+ ....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~--l~----~~~~~i~~~~-~~~~~i~~~~-~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD--VN----ADMMFVNGSD-CKIDFVRGPL-TNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH--TT----EEEEEEETTT-CCHHHHHTHH-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH--hC----CCEEEEcccc-cCHHHHHHHH-HHHH
Confidence 4568999999999999976555678888899999999999999853 22 2334555443 2233332222 2211
Q ss_pred CCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH---hHHHhhh---c-CCCceEEEEecccccc-----cccceEE
Q 003321 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA---VLEQLIF---R-VPGCKTLVVSRFKFST-----VLNDTYE 330 (830)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~---~~~~l~~---~-~~gs~iivTtr~~~~~-----~~~~~~~ 330 (830)
.... ..+++.+||+|+++... ..+.+.. . .++.++|+||...... .....++
T Consensus 98 ~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 98 SAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred hhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 1000 12467899999999653 3333332 2 2356777777654321 2224789
Q ss_pred ccCCCHHHHHHHH-------HHHhcCCCCCCCchhH-HHHHHHHHHcCCchHHHH
Q 003321 331 VELLREDESLSLF-------CYSAFGQKTIPPSANE-NLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 331 l~~L~~~e~~~Lf-------~~~af~~~~~~~~~~~-~~~~~i~~~c~GlPLai~ 377 (830)
+++++.++-.+++ ...+.... . ...+ +....+++.++|.+-.+.
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~-~--~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEG-I--AIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHT-C--CBSCHHHHHHHHHHTCSCTTHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--CCCcHHHHHHHHHhCCCCHHHHH
Confidence 9999988743332 22221111 1 1112 567788888888766443
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=0.00011 Score=80.60 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhccccccccc-CCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
...+.|+|++|+||||||+.+++ .....+ ...+++++.. .+...+...+.... ........
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~----------~~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK----------LNEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC----------HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc----------HHHHHHHh
Confidence 67899999999999999999995 333333 3334455433 23344444432210 11122222
Q ss_pred cCCcEEEEEeCCCChH----hHHHhhh-----cCCCceEEEEecccccc------------cccceEEccCCCHHHHHHH
Q 003321 284 LGSRCLVVLDDVWSLA----VLEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (830)
Q Consensus 284 ~~kr~LlVlDdv~~~~----~~~~l~~-----~~~gs~iivTtr~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (830)
..+..+|+|||++... ..+.+.. ...|..||+||...... .....+.+++++.++-..+
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 3367799999997432 2222221 23477899988764221 1125788999999999999
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 343 f~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+.+.+-...-. ..++....|++.++|.+-.+.
T Consensus 272 L~~~~~~~~~~---i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 272 ARKMLEIEHGE---LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHTCC---CCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHH
Confidence 98776321111 112356778888888876544
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.91 E-value=0.00026 Score=74.61 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=95.5
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc--------------------cccCCceEEEEec---CCC
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------------------SYFNNRILFLTVS---QSP 248 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~--------------------~~F~~~~~wv~v~---~~~ 248 (830)
.+.+...+..+.-...+-++|++|+||||+|+.+.+.-.-. .+++ +.++... ...
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d--~~~~~~~~~~~~~ 88 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD--YYTLAPEKGKNTL 88 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT--EEEECCCTTCSSB
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC--EEEEeccccCCCC
Confidence 45566666544445689999999999999999987431110 0122 2233322 122
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---c-CCCceEEEEecccc-
Q 003321 249 NVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVSRFKF- 321 (830)
Q Consensus 249 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTtr~~~- 321 (830)
.++++ +.+.+.+.... ..+++-++|+|+++.. +..+.+.. . .+++.+|++|....
T Consensus 89 ~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 89 GVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp CHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 33332 23333322110 1356788999999853 33344432 2 23567777766543
Q ss_pred cc----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 322 ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 322 ~~----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
+. .....+++++++.++..+.+.... . ..++.+..+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREV----T----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 334578999999999999988765 1 12346688999999999766543
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=0.00025 Score=74.42 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=97.3
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+++.. ....+-|.++|++|+|||+||+.+++. .... ++.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~----~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST----FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE----EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC----EEEEchH------
Confidence 3568999889888887721 123467899999999999999999953 2222 2233322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCChH-------------hHHHhhh-------cCCC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA-------------VLEQLIF-------RVPG 310 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~~-------------~~~~l~~-------~~~g 310 (830)
++ .....+ ............ ...++.+|+||+++... ....+.. ...+
T Consensus 86 ~l----~~~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 DL----VSKWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp HH----HTTTGG-------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred HH----hhcccc-------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 110000 001111112211 14567899999997431 1222221 1234
Q ss_pred ceEEEEecccccc------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHHH
Q 003321 311 CKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIG 380 (830)
Q Consensus 311 s~iivTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 380 (830)
..||.||...... .....+.++..+.++-.++|..++..... ...+.....|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555565543211 33456788999999999999887743221 11234667888888874 44444443
No 185
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.88 E-value=0.00032 Score=76.67 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=97.2
Q ss_pred cccccchhh---HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC-CCCHHHHHHHHHH
Q 003321 184 MGIGMALGK---NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~---~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~ 259 (830)
.++|.+..+ ..+...+.. .....+.++|++|+||||+|+.+++. ....| +.++. .....++.. ++.
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~-~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f------~~l~a~~~~~~~ir~-~~~ 96 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEA-GHLHSMILWGPPGTGKTTLAEVIARY--ANADV------ERISAVTSGVKEIRE-AIE 96 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHH-TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE------EEEETTTCCHHHHHH-HHH
T ss_pred HhCCcHHHHhchHHHHHHHHc-CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe------EEEEeccCCHHHHHH-HHH
Confidence 467877666 566666653 45578999999999999999999953 32222 23322 223333222 211
Q ss_pred hhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhhcC--CCceEEE-Eecccccc------cccce
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRV--PGCKTLV-VSRFKFST------VLNDT 328 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~--~gs~iiv-Ttr~~~~~------~~~~~ 328 (830)
... . ....+++.+|+||+++.. .+.+.|.... ....+|. ||.+.... ....+
T Consensus 97 ~a~---------------~--~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 97 RAR---------------Q--NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HHH---------------H--HHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HHH---------------H--hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeE
Confidence 110 0 011467889999999854 2333333211 1233333 44443211 22357
Q ss_pred EEccCCCHHHHHHHHHHHhcCCCC----CCCchhHHHHHHHHHHcCCchHHHHHHH
Q 003321 329 YEVELLREDESLSLFCYSAFGQKT----IPPSANENLVKQIVKKCKGLPLALKVIG 380 (830)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~af~~~~----~~~~~~~~~~~~i~~~c~GlPLai~~~~ 380 (830)
+.+++++.++-..++.+.+-.... ......++....+++.++|.+-.+..+-
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 889999999999999877543111 1112235678889999999887654443
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.83 E-value=0.0006 Score=69.09 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=91.6
Q ss_pred cccccchhhHHHHHHHhc---C--------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 184 MGIGMALGKNKVKEMVIG---R--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~---~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
.++|.+..++.+.+++.. . ...+-|.++|++|+|||++|+.+++. .. ..++.++.+.-.+.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~----~~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQ----VPFLAMAGAEFVEV-- 78 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HT----CCEEEEETTTTSSS--
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hC----CCEEEechHHHHhh--
Confidence 457887777777665521 1 23456889999999999999999853 22 22234443321110
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-----------------HhHHHhhh---c---C
Q 003321 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-----------------AVLEQLIF---R---V 308 (830)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-----------------~~~~~l~~---~---~ 308 (830)
. ...........+.. ......+|+||+++.. ..+..+.. . .
T Consensus 79 --------~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 --------I-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------S-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------c-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00000111111111 1345789999999854 11222222 1 1
Q ss_pred CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHH
Q 003321 309 PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVI 379 (830)
Q Consensus 309 ~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 379 (830)
.+..+|.||..... + .....+.++..+.++-.+++..++-.... ..........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 24455555543321 1 22356789999999999999877632221 11122235778888888754 44433
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=0.00066 Score=70.28 Aligned_cols=172 Identities=17% Similarity=0.128 Sum_probs=95.5
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+++.. ....+.+.|+|++|+||||+|+.+++. .. ...+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~----~~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CS----ATFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TT----CEEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hC----CCeEEeeHHHHhh--
Confidence 3568888888888887632 124568899999999999999999853 22 2222333322110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------HhHHHhh---hcC------
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLI---FRV------ 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~~~~~l~---~~~------ 308 (830)
.. .............. ...++.+|+||+++.. .....+. ...
T Consensus 93 ------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 ------------KY---VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp ------------SS---CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred ------------cc---cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 00000111111111 1456789999999642 1111121 112
Q ss_pred CCceEEEEecccc-cc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHHH
Q 003321 309 PGCKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIG 380 (830)
Q Consensus 309 ~gs~iivTtr~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 380 (830)
.+..||.||.... .. .....+.++..+.++-..++...+-.... ...+.....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1344555555432 11 23356788888888888888776532211 1123467788889988775 454443
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.0004 Score=73.48 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=98.0
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcC
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (830)
.++|.+..++.+...+.. +....+.++|++|+||||+|+.+++.-. ...+...+.-++.+.......+... +..+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~-g~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~ir~~-i~~~~~ 102 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE-GKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVRNQ-IKDFAS 102 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT-TCCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHHHTH-HHHHHH
T ss_pred HhcCcHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHHHHH-HHHHHh
Confidence 457877777777777764 3333489999999999999999985311 1122222323333333334333222 222110
Q ss_pred CCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhh---hcC-CCceEEEEeccccc-c----cccceEEcc
Q 003321 264 CDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLI---FRV-PGCKTLVVSRFKFS-T----VLNDTYEVE 332 (830)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~---~~~-~gs~iivTtr~~~~-~----~~~~~~~l~ 332 (830)
... ...+.+-++|+|+++.. +..+.+. ... +..++|++|..... . .....+++.
T Consensus 103 ~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 103 TRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp BCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 000 01234678999998742 3333333 223 35666766654321 1 223468899
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 003321 333 LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (830)
Q Consensus 333 ~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 377 (830)
+++.++..+.+...+-...- ...++..+.+++.++|.+--+.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999988888765522211 1224567888999999877543
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.78 E-value=0.00075 Score=74.00 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=97.5
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+.+.. ....+-|.++|++|+|||+||+.+++... . .. ++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~----~~--~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N----ST--FFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S----SE--EEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C----CC--EEEEeHHH---
Confidence 3568888888888887621 13457899999999999999999995320 1 11 33333221
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-------------HhHHHhhhc-------CCC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AVLEQLIFR-------VPG 310 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-------------~~~~~l~~~-------~~g 310 (830)
+.. ...+ .........+... ..++.+|+||+++.. .....+... ..+
T Consensus 204 -l~~----~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVS----KWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHh----hhcc-------hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111 1001 0111122222222 457889999999854 122333321 124
Q ss_pred ceEEEEecccccc------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHHH
Q 003321 311 CKTLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIG 380 (830)
Q Consensus 311 s~iivTtr~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 380 (830)
..||.||...... .....+.++..+.++-..+|..++-.... ...+.....|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555555433211 23357788889999999999887633211 11234567888888884 44444443
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.74 E-value=0.00012 Score=78.59 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=96.3
Q ss_pred cccccchhhHHH---HHHHhcCC-CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec----CCCCHHHHHH
Q 003321 184 MGIGMALGKNKV---KEMVIGRD-DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS----QSPNVEQLRA 255 (830)
Q Consensus 184 ~~vgr~~~~~~l---~~~L~~~~-~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~----~~~~~~~l~~ 255 (830)
.++|++..++.+ .+.+.... ..+.+.|+|++|+|||++|+.+++. .....+ .+.+... ......+...
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP--FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC--EEEEEGGGGSCSSSCHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC--cccccchhhhhcccchhHHHH
Confidence 578988887664 33443322 2368999999999999999999853 222211 1122211 1223333333
Q ss_pred HHHHhhcCCC----------------------------CCCCCCCcccchHHH----Hh--hcCC----cEEEEEeCCCC
Q 003321 256 KVWGFVSGCD----------------------------SMEPNYVIPHWNLQI----QS--KLGS----RCLVVLDDVWS 297 (830)
Q Consensus 256 ~i~~~l~~~~----------------------------~~~~~~~~~~~~~~~----~~--l~~k----r~LlVlDdv~~ 297 (830)
..+....+.. ..............+ .. ..++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 3332211100 000000011111111 11 1233 35999999985
Q ss_pred h--HhHHHhhh---cCCCceEEEEeccc-------------cc--c--cccceEEccCCCHHHHHHHHHHHhcCCCCCCC
Q 003321 298 L--AVLEQLIF---RVPGCKTLVVSRFK-------------FS--T--VLNDTYEVELLREDESLSLFCYSAFGQKTIPP 355 (830)
Q Consensus 298 ~--~~~~~l~~---~~~gs~iivTtr~~-------------~~--~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~ 355 (830)
. +....+.. ..+...++++|... .+ + .....+.+++++.++..+++...+-....
T Consensus 201 l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--- 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC---
T ss_pred cChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC---
Confidence 4 33333332 23333444444311 01 0 11234799999999999999877633221
Q ss_pred chhHHHHHHHHHHcC-CchHHHHH
Q 003321 356 SANENLVKQIVKKCK-GLPLALKV 378 (830)
Q Consensus 356 ~~~~~~~~~i~~~c~-GlPLai~~ 378 (830)
...++....|++.+. |.|-.+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 123457788888887 77765443
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.73 E-value=0.00048 Score=73.16 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=96.2
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+.+.. ....+-|.++|++|+|||+||+.+++. ... .++.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~----~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANS----TFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTC----EEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCC----CEEEeeHH------
Confidence 3468888888888887631 123356889999999999999999953 222 22233322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCChH-------------hHHHhhh---c----CCC
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA-------------VLEQLIF---R----VPG 310 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~~-------------~~~~l~~---~----~~g 310 (830)
++ .....+ .........+.. ...++.+|+||+++... ....+.. + ..+
T Consensus 119 ~l----~~~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DL----VSKWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HH----hhhhcc-------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 111000 011111222222 14578999999998431 1222221 1 224
Q ss_pred ceEEEEecccc-cc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHHH
Q 003321 311 CKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVIG 380 (830)
Q Consensus 311 s~iivTtr~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 380 (830)
..||.||.... +. .....+.++..+.++-.+++..++-.... ...+.....|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555554332 11 34467789999999999999887643221 11234567888888884 44454443
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.72 E-value=0.00029 Score=73.52 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=79.2
Q ss_pred ccccchhhHHHHHHHhc--------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 185 GIGMALGKNKVKEMVIG--------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~--------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
++|.+..++.+.+++.. ......+.|+|++|+|||++|+.+++...........- ++.++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~--- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH-LVSVTRD--- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC-EEEECGG---
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc-EEEEcHH---
Confidence 47777777777665531 23455789999999999999998875321111111111 3333311
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCC-----------ChHhHHHhh---h-cCCCceEEE
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVW-----------SLAVLEQLI---F-RVPGCKTLV 315 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~-----------~~~~~~~l~---~-~~~gs~iiv 315 (830)
.+.... . ..........+.. .+..+|+||+++ ..+....+. . ...+..+|.
T Consensus 109 ---------~l~~~~-~--g~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY-I--GHTAPKTKEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS-T--TCHHHHHHHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc-c--cccHHHHHHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 110000 0 0000111111211 134599999998 333333333 2 334667777
Q ss_pred Eecccc--------cc---cccceEEccCCCHHHHHHHHHHHh
Q 003321 316 VSRFKF--------ST---VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 316 Ttr~~~--------~~---~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
||.... .. .....+.+++++.++-.+++...+
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 775321 11 233678999999999999987765
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.66 E-value=0.00079 Score=69.72 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=91.9
Q ss_pred cccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.++|.+..++++.+++.. -...+.|.++|++|+|||+||+.+++. ... . ++.++ ..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~----~--~i~v~----~~ 83 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA----N--FISIK----GP 83 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC----E--EEEEC----HH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC----C--EEEEE----hH
Confidence 468888888888877642 145668999999999999999999953 222 2 22232 22
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCChH----------------hHHHhhh---c---C
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA----------------VLEQLIF---R---V 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~~----------------~~~~l~~---~---~ 308 (830)
++..... +.. .......+.. ....+.+|+||+++... ....+.. + .
T Consensus 84 ~l~~~~~----g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 84 ELLTMWF----GES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHH----TTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHhhhc----Cch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 3322221 111 1112222222 24567999999997421 1122221 1 1
Q ss_pred CCceEEEEecccc-c--c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH
Q 003321 309 PGCKTLVVSRFKF-S--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (830)
Q Consensus 309 ~gs~iivTtr~~~-~--~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL 374 (830)
.+..||.||.... + + .....+.++..+.++-.+++..+.-........ ....++..+.|.|-
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~----~~~~la~~~~g~sg 222 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFSG 222 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHTCSSCCH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc----hHHHHHHHcCCCCH
Confidence 2455666665432 1 1 233568899999999889887765322211111 12345556666654
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.66 E-value=0.00051 Score=72.17 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=89.6
Q ss_pred hHHHHHHHhcCC-CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCC
Q 003321 192 KNKVKEMVIGRD-DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPN 270 (830)
Q Consensus 192 ~~~l~~~L~~~~-~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~ 270 (830)
...+..++.... ....+.|+|++|+||||||+.+++... .. ...+++++.. ++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~--~~-~~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK--KR-GYRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH--HT-TCCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH--HC-CCEEEEEEHH------HHHHHHHHHHHcC------
Confidence 344444443322 456789999999999999999985321 11 2234455433 3333333333211
Q ss_pred CCcccchHHHHhhcCCcEEEEEeCCCChH----hHHHhhh-----cCCCceEEEEecccccc------------cccceE
Q 003321 271 YVIPHWNLQIQSKLGSRCLVVLDDVWSLA----VLEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTY 329 (830)
Q Consensus 271 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~----~~~~l~~-----~~~gs~iivTtr~~~~~------------~~~~~~ 329 (830)
. ........ .+..+|+|||++... ..+.+.. ...|..||+||...... .....+
T Consensus 88 -~---~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 88 -T---INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp -C---HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred -c---HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 0 01111112 236799999997532 1122221 12467888888654221 112568
Q ss_pred EccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHH
Q 003321 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (830)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLa 375 (830)
++++ +.++...++...+..... ...++....|++.+ |.+-.
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 9999 999999999887642221 12245677888888 76543
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.60 E-value=0.0017 Score=70.08 Aligned_cols=172 Identities=17% Similarity=0.115 Sum_probs=95.5
Q ss_pred ccccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++.+.+++.. ....+-|.|+|++|+|||+||+.+++. .. ..++.++.+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~----~~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SN----ATFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TT----CEEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hc----CcEEEeeHHHhhc--
Confidence 4579999999999888721 123468899999999999999999853 22 2222333322111
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh-------------HhHHHhhh----c---CC-
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AVLEQLIF----R---VP- 309 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~-------------~~~~~l~~----~---~~- 309 (830)
... ..........+... .....+|+||+++.. .....+.. . .+
T Consensus 187 ~~~---------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KYV---------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred ccc---------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 000 00001111112111 345679999999643 11112211 1 11
Q ss_pred CceEEEEecccc-cc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchH-HHHHHH
Q 003321 310 GCKTLVVSRFKF-ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIG 380 (830)
Q Consensus 310 gs~iivTtr~~~-~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 380 (830)
...||.||.... +. .....+.++..+.++-.+++...+-.... ...++....+++.+.|..- ++..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 234444554322 11 23346888999999999999877633221 1223467788999988544 555443
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.58 E-value=6.9e-05 Score=71.52 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=37.6
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|++.+.+.+.+.+.. ...+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999998864 44566789999999999999999853
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0019 Score=68.35 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=93.3
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC-
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN- 249 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~- 249 (830)
..+.|.+..+++|.+.+.- -...+=|-++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF----IRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE----EEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc----eEEEhHHhhcc
Confidence 4567888888888877632 144677889999999999999999953 32222 3454443211
Q ss_pred ----HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh----------------HhHHHhhh---
Q 003321 250 ----VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------------AVLEQLIF--- 306 (830)
Q Consensus 250 ----~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~--- 306 (830)
.....+.++.. .....++.|++|+++.. ..+..++.
T Consensus 222 ~vGese~~vr~lF~~---------------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 222 YIGEGSRMVRELFVM---------------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp STTHHHHHHHHHHHH---------------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH---------------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 11112222211 12456899999999842 01222221
Q ss_pred cC---CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 307 RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 307 ~~---~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
++ .+..||.||..... + ..+..++++..+.++-.++|+.+.-+-.. ..+. -..++++.+.|.-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC---CHHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC---CHHHHHHHCCCCC
Confidence 22 23345555544322 1 34578999999999999999877632221 1111 1456777777753
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=0.00017 Score=68.44 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
.-..+.|+|++|+||||||+.+++.......+ .+.+++ ..++...+........ . ......+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~------~~~~~~~~~~~~~~~~-------~---~~~~~~~ 98 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFD------TKDLIFRLKHLMDEGK-------D---TKFLKTV 98 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEE------HHHHHHHHHHHHHHTC-------C---SHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEE------HHHHHHHHHHHhcCch-------H---HHHHHHh
Confidence 45789999999999999999998643212222 233443 3344444443332111 0 1122222
Q ss_pred cCCcEEEEEeCCCC--hHh-----HHHhhhc--CCCceEEEEeccc
Q 003321 284 LGSRCLVVLDDVWS--LAV-----LEQLIFR--VPGCKTLVVSRFK 320 (830)
Q Consensus 284 ~~kr~LlVlDdv~~--~~~-----~~~l~~~--~~gs~iivTtr~~ 320 (830)
.+.-+|||||++. .+. +..+... ..|..+|+||...
T Consensus 99 -~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 -LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2456899999983 222 2222222 2578888888754
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=0.00027 Score=68.47 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=57.9
Q ss_pred hHHHHHHHhcCC---CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCC
Q 003321 192 KNKVKEMVIGRD---DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSME 268 (830)
Q Consensus 192 ~~~l~~~L~~~~---~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~ 268 (830)
.+.+.+++.... ..+.+.|+|++|+|||+||+.+++.. .... ..+.+++.+ .+...+.......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~-~~~~~~~~~------~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 38 IRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRN-VSSLIVYVP------ELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTT-CCEEEEEHH------HHHHHHHHC---C----
T ss_pred HHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcC-CeEEEEEhH------HHHHHHHHHhccc----
Confidence 344555554322 12789999999999999999999642 2222 234466543 3444443322110
Q ss_pred CCCCcccchHHHHhhcCCcEEEEEeCCCCh--Hh------HHHhhh-c-CCCceEEEEeccc
Q 003321 269 PNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AV------LEQLIF-R-VPGCKTLVVSRFK 320 (830)
Q Consensus 269 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~------~~~l~~-~-~~gs~iivTtr~~ 320 (830)
. .......+.. .-+|||||++.. .. +..+.. . ..+.++|+||...
T Consensus 105 ---~---~~~~~~~~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ---T---MNEKLDYIKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---C---CHHHHHHHHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---h---HHHHHHHhcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 1222222222 238999999642 21 222222 1 3467888888754
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.44 E-value=0.00068 Score=70.62 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=35.1
Q ss_pred ccccccchhhHHHHHHHhc-------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIG-------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-------------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..++.+...+.. ......+.++|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3468888888888877743 12345678999999999999999985
No 201
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=97.43 E-value=2.3e-06 Score=80.66 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhhcchHHHHHHHHHHHHhhhhhccccchhh-hhhhhhhHHhhhhHHhhhHHH--H
Q 003321 65 LDHLSETLKDGIELCRKVLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGS--A 141 (830)
Q Consensus 65 ~~~~~~~l~~~~~~~~d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~ 141 (830)
+..-+++-|-++......|.++.||+ .|++++++|..+.. +....|++|.| |++++++.+.+|++|.+++.. -
T Consensus 83 l~~aIe~Sri~IvV~S~nYa~S~WCl---~EL~~I~e~~~~~~-~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~ 158 (204)
T 3ozi_A 83 LLRAIDQSKIYVPIISSGYADSKWCL---MELAEIVRRQEEDP-RRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG 158 (204)
T ss_dssp HHHHHHHCSEEEEEECTTGGGCHHHH---HHHHHHHHHHHHCT-TSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH
T ss_pred HHHHHHhCcEeeEEEEcccccCcHHH---HHHHHHHHHHHhcC-CeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH
Confidence 33344444445555668889999999 68899999865421 22346899999 999999999999999999765 3
Q ss_pred HHHHHHhhccccccCCCCcch
Q 003321 142 RRLEQRLGAMRIGVGGGGWVD 162 (830)
Q Consensus 142 ~~l~~~~~~~~~~~~~~~~~~ 162 (830)
+++++|+.++....+.+||..
T Consensus 159 ~~v~~Wr~AL~~va~lsG~~~ 179 (204)
T 3ozi_A 159 QTIQNWKDALKKVGDLKGWHI 179 (204)
T ss_dssp HHHHHHHHHHHHHHTSCBEEE
T ss_pred HHHHHHHHHHHHHhccCceec
Confidence 689999999987777777653
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0023 Score=68.87 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=93.0
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
..+.|.+..+++|.+.+.- -...+=|-++|++|.|||+||+++++. .... ++.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~----~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN----FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE----EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC----EEEEehhhhcc-
Confidence 3567888888888777632 145678999999999999999999953 2222 23454443211
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh----------------HhHHHhhh---cC--
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL----------------AVLEQLIF---RV-- 308 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~----------------~~~~~l~~---~~-- 308 (830)
.. .......+...+.. ....+++|++|+++.. ..+..++. ++
T Consensus 254 -------------k~---~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 -------------KY---IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -------------SS---SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -------------cc---chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00 00000111111111 2467899999999732 01222322 22
Q ss_pred -CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 309 -PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 309 -~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
.+..||.||-.... + ..+..++++..+.++-.++|+.+.-+-...... -...+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCCC
Confidence 23456666644321 2 134678899899999899998776332211111 1356777777743
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.40 E-value=0.0008 Score=80.41 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc---ccccc-CCceEEEEecCCCCHHHHHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTSYF-NNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~---~~~~F-~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..++||+.++.++.+.+.. ...+-+.++|++|+||||+|+.+++... +.... ...+++++.+.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~-~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR-RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC-SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred cccCCcHHHHHHHHHHHhc-CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 3479999999999998864 3344568999999999999999985321 11111 22333443321100
Q ss_pred HhhcCCCCCCCCCCcccchHHHHhh--cCCcEEEEEeCCCChH-------------hHHHhhhcCCCceEEEEec-ccc-
Q 003321 259 GFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-------------VLEQLIFRVPGCKTLVVSR-FKF- 321 (830)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~l--~~kr~LlVlDdv~~~~-------------~~~~l~~~~~gs~iivTtr-~~~- 321 (830)
+... .......+...+... .+++.+|++|+++... .+..+... .+..+|.+|. ...
T Consensus 240 ----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEYR 312 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHHH
T ss_pred ----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHHh
Confidence 0000 000111122222222 2467899999998542 12222222 2344554443 221
Q ss_pred -----cc--cccceEEccCCCHHHHHHHHHHH
Q 003321 322 -----ST--VLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 322 -----~~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
.+ .....+.++.++.++..+++...
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 11 22245899999999999998643
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=0.0071 Score=63.50 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=88.0
Q ss_pred cccccchhhHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.++|.+..++.+...+.. ......+.++|++|+||||||+.+++. ....| .....+-.....++. .+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~~~~~l~-~~~- 97 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLVKQGDMA-AIL- 97 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCCSHHHHH-HHH-
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhcCHHHHH-HHH-
Confidence 356776666666555532 234578999999999999999999953 22111 111111111112211 111
Q ss_pred hhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---cC-------------------CCceEE-
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-------------------PGCKTL- 314 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---~~-------------------~gs~ii- 314 (830)
..+ .++.++++|++... ...+.+.. .. +...++
T Consensus 98 ---------------------~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 98 ---------------------TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ---------------------HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ---------------------HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111 23446778887642 12222211 11 111222
Q ss_pred EEecccccc-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 003321 315 VVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (830)
Q Consensus 315 vTtr~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 379 (830)
.|++..... ...-.+.+++.+.++-.+++.+.+-... ....++.+..|+++++|.|-.+.-+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 233333222 2223578999999999999987653211 1223467899999999999765433
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=9.7e-05 Score=70.53 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=26.0
Q ss_pred ccCCCCCCCEEEeeCcCCCC----ccchhcCCCCCCCEEEcccCCCCCc----cchhhcCCCCCcEecc
Q 003321 688 SICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPHLRT----LPARICELVCLKYLNI 748 (830)
Q Consensus 688 ~i~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~L 748 (830)
.+...++|++|+|++|.... .+...+...++|++|+|++|..... +...+...++|++|+|
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 33444555555555544221 1222333344555555555432211 2333444445555555
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.0023 Score=66.04 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=84.4
Q ss_pred chhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccc-cccccCCceEEEEecC-CCCHHHHHHHHHHhhcCCCC
Q 003321 189 ALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDS 266 (830)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~ 266 (830)
+..++.+...+..+. ....-++|++|+||||+|+.+.+... ....+.. +.+++.+. ...++++. .+.+.+....
T Consensus 3 ~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir-~li~~~~~~p- 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIR-TIKDFLNYSP- 78 (305)
T ss_dssp -CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHH-HHHHHHTSCC-
T ss_pred HHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHH-HHHHHHhhcc-
Confidence 344566677776444 77999999999999999999975311 1111222 33555443 34554443 3545442211
Q ss_pred CCCCCCcccchHHHHhhcCCcEEEEEeCCCC--hHhHHHhhh---c-CCCceEEEEecccc-cc---cccceEEccCCCH
Q 003321 267 MEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---R-VPGCKTLVVSRFKF-ST---VLNDTYEVELLRE 336 (830)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~--~~~~~~l~~---~-~~gs~iivTtr~~~-~~---~~~~~~~l~~L~~ 336 (830)
..+++-++|+|+++. .+..+.++. . .+.+.+|++|.... +. ... .+++.+++.
T Consensus 79 ----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~ 141 (305)
T 2gno_A 79 ----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVP 141 (305)
T ss_dssp ----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCC
T ss_pred ----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCH
Confidence 024577899999984 344444443 3 34667777764432 21 223 899999999
Q ss_pred HHHHHHHHHHh
Q 003321 337 DESLSLFCYSA 347 (830)
Q Consensus 337 ~e~~~Lf~~~a 347 (830)
++..+.+...+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887765
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=1.8e-05 Score=75.60 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=19.9
Q ss_pred hhcCCCCCCCEEEc--ccCCCCCc----cchhhcCCCCCcEeccccc
Q 003321 711 ADIGKMKSLQILRL--YACPHLRT----LPARICELVCLKYLNISQC 751 (830)
Q Consensus 711 ~~i~~l~~L~~L~l--~~~~~l~~----lp~~~~~l~~L~~L~L~~c 751 (830)
..+...++|++|+| ++|..... +...+...++|++|+|++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34444455555555 44332211 2333444566666666654
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.34 E-value=0.00073 Score=74.65 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=75.9
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccccc------CCceEEEEecCCCCHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF------NNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F------~~~~~wv~v~~~~~~~~l~~~i 257 (830)
.+|||+.++..+...+... ...-+.++|++|+|||++|+.+++. +...+ ...++.++.+.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------------
T ss_pred CccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----------
Confidence 5799999999999998753 3345679999999999999999853 21111 22222222220
Q ss_pred HHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCChHhHHHhhhcC-CC-ceEEEEecccc------cc----c
Q 003321 258 WGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFRV-PG-CKTLVVSRFKF------ST----V 324 (830)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~l~~~~-~g-s~iivTtr~~~------~~----~ 324 (830)
.. ...........+... ..++.+|++| ...+....+.... .| .++|.+|.... .. .
T Consensus 247 --~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 --KY-------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred --cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 000111222233222 3567889999 2223323333322 23 45555554432 11 1
Q ss_pred ccceEEccCCCHHHHHHHHHHHh
Q 003321 325 LNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 325 ~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
....+.++.++.++..+++...+
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCccceeCCCCHHHHHHHHHHHH
Confidence 22468999999999999998654
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0034 Score=67.37 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=90.8
Q ss_pred cccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC--
Q 003321 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN-- 249 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~-- 249 (830)
.+.|.+..+++|.+.+.- -...+=|-++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF----IRVIGSELVQKY 283 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE----EEEEGGGGCCCS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe----EEEEhHHhhccc
Confidence 567888888888776521 146778899999999999999999953 33222 3444332111
Q ss_pred ---HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCChH----------------hHHHhhh---c
Q 003321 250 ---VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA----------------VLEQLIF---R 307 (830)
Q Consensus 250 ---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~---~ 307 (830)
.....+.++.. .....+++|++|+++... ....++. +
T Consensus 284 vGesek~ir~lF~~---------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 284 VGEGARMVRELFEM---------------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSHHHHHHHHHHHH---------------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHH---------------------HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 11111111111 124678999999997420 1112221 2
Q ss_pred C---CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 308 V---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 308 ~---~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
. .+..||.||-.... + ..+..++++..+.++-.++|+.+.-+-.. ..+. -...|++.+.|.
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dv---dl~~LA~~T~Gf 414 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGI---RWELISRLCPNS 414 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSC---CHHHHHHHCCSC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCC---CHHHHHHHCCCC
Confidence 2 23344455533321 1 34567889999999999999877632221 1111 135677777775
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0027 Score=68.20 Aligned_cols=46 Identities=26% Similarity=0.244 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..+.|.+..+++|.+.+.- -...+=|.++|++|.|||+||+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567888888888877631 145677899999999999999999953
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.27 E-value=0.00082 Score=61.09 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=33.5
Q ss_pred ccccchhhHHHHHHHhc-CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 185 GIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|+...+.++.+.+.. .....-|.|+|.+|+|||++|+.+++.
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 57888888888887743 123345679999999999999999853
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0022 Score=69.01 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=90.2
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC-
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN- 249 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~- 249 (830)
..+.|.+..+++|.+.+.. -...+=|-++|++|.|||.||+++++. .... ++.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~----f~~v~~s~l~~~ 254 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT----FLKLAAPQLVQM 254 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE----EEEEEGGGGCSS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC----EEEEehhhhhhc
Confidence 4668888888888876521 145678899999999999999999953 2222 23444432111
Q ss_pred ----HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh-------------H---hHHHhhh---
Q 003321 250 ----VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL-------------A---VLEQLIF--- 306 (830)
Q Consensus 250 ----~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~-------------~---~~~~l~~--- 306 (830)
.....+.++.. .....+++|++|+++.. . .+..++.
T Consensus 255 ~vGese~~ir~lF~~---------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 255 YIGEGAKLVRDAFAL---------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp CSSHHHHHHHHHHHH---------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHH---------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 11112222111 11346899999998631 0 1122222
Q ss_pred cCC---CceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 307 RVP---GCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 307 ~~~---gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
++. +..||.||..... + ..+..++++..+.++-.++|+.+.-+-...+.- -...|++.+.|.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI----NWQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 222 3344545544322 1 234678899999998889987665222111111 135677777764
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0044 Score=65.81 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=89.9
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCC-
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN- 249 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~- 249 (830)
..+.|.+..+++|.+.+.- -...+=|-++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF----LRIVGSELIQK 255 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE----EEEESGGGCCS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE----EEEEHHHhhhc
Confidence 4567888888888776631 144678999999999999999999953 32222 3444332111
Q ss_pred ----HHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh----------------HhHHHhhh---
Q 003321 250 ----VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------------AVLEQLIF--- 306 (830)
Q Consensus 250 ----~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~--- 306 (830)
.....+.++.. .....+++|++|+++.. ..+..++.
T Consensus 256 ~vGesek~ir~lF~~---------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKV---------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SSSHHHHHHHHHHHH---------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHH---------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 11122222211 11456899999998732 11222221
Q ss_pred cC---CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003321 307 RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (830)
Q Consensus 307 ~~---~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl 372 (830)
+. .+..||.||-.... + ..+..++++..+.++-.++|..+.-+-.....- -...+++.+.|.
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~Gf 387 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDL 387 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCC
Confidence 11 23345555543322 1 234568888899999999998776322211111 135667777664
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.22 E-value=0.00048 Score=62.48 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=32.3
Q ss_pred cccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|+...+.++.+.+... ....-|.|+|.+|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4688888888888877431 2334477999999999999999985
No 215
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00013 Score=67.55 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCCchhhhcchHHHHHHHHHHHHhhhhhccccchhh-hhhhhhhHHhhhhHHhhhHHH--HHHHHHHhhcc
Q 003321 75 GIELCRKVLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGS--ARRLEQRLGAM 151 (830)
Q Consensus 75 ~~~~~~d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 151 (830)
++......|.++.||+ .|++.+++|.+... ....|++|.| |++++++.+.+|++|.+++.+ .+++++|+.|+
T Consensus 66 ~IvV~S~ny~~S~WCl---~EL~~i~~~~~~~~--~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL 140 (176)
T 3jrn_A 66 AVVVVSENYAASSWCL---DELVTIMDFEKKGS--ITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQAL 140 (176)
T ss_dssp EEEEECTTTTTCHHHH---HHHHHHHHHHHTTS--CEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred EEEEecCCcCCChhHH---HHHHHHHhhhccCC--CEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344557789999999 68889998865433 3445899999 999999999999999999765 57899999999
Q ss_pred ccccCCCCcch
Q 003321 152 RIGVGGGGWVD 162 (830)
Q Consensus 152 ~~~~~~~~~~~ 162 (830)
....+.+||..
T Consensus 141 ~~va~~~G~~~ 151 (176)
T 3jrn_A 141 TNFAQLSGDCS 151 (176)
T ss_dssp HHHTTSCCEEC
T ss_pred HHHhcccceec
Confidence 87777777653
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.11 E-value=0.00045 Score=69.46 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCCCEEEcccCCCCC--ccchhhcCCCCCcEeccccccccCcchhhhccCC--CCcEEeccCccCCccCC
Q 003321 716 MKSLQILRLYACPHLR--TLPARICELVCLKYLNISQCVSLSCLPQGIGNLI--RLEKIDMRECSQIWSLP 782 (830)
Q Consensus 716 l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~L~~c~~l~~lp~~l~~l~--~L~~L~l~~~~~l~~lp 782 (830)
+++|+.|+|++|.... .+|..+..+++|+.|+|++| .+..+ ..+..+. +|++|+|++|+....+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 3444444444432211 23334445555555555553 23333 1233333 66666666666433343
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.10 E-value=0.00084 Score=68.28 Aligned_cols=45 Identities=29% Similarity=0.183 Sum_probs=33.7
Q ss_pred cccccchhhHHHHHHHhc-----------CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..++.+.+++.. ....+-+.++|++|+|||+||+.+++.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 468888888887776531 122334779999999999999999953
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.0084 Score=60.33 Aligned_cols=45 Identities=27% Similarity=0.238 Sum_probs=32.3
Q ss_pred cccccchhhHHHHHHHh---cC--------CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVI---GR--------DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~---~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..++++.+++. .. ...+-+.|+|++|+||||||+.+++.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46777777776665542 11 12345889999999999999999853
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.08 E-value=0.0097 Score=65.07 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=89.4
Q ss_pred ccccccchhhHHHHHHHhc--C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 183 LMGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..++|.+..++++.+++.. . ...+-|.++|++|+|||+||+.+++.. . ..++.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~----~~f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--N----VPFFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--T----CCEEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--C----CCeeeCCHHHHHHH-
Confidence 3468888877777766521 1 123458899999999999999999632 2 12234443322110
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh----------------HhHHHhhh---c---C
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL----------------AVLEQLIF---R---V 308 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~----------------~~~~~l~~---~---~ 308 (830)
. . ..........+.. ..+.+.+|+||+++.. ..+..+.. + .
T Consensus 89 ---------~-----~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-----V--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-----T--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-----h--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 0 0000111112221 2467899999999642 12333332 1 1
Q ss_pred CCceEEEEeccccc---c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 309 PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 309 ~gs~iivTtr~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
.+..||.||..... + .....+.++..+.++-.+++..++-... ..+.. ....+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchh---hHHHHHHhcCCCc
Confidence 24455556654322 1 1234788888888888888877663321 11111 1345788888876
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.96 E-value=0.0059 Score=63.07 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|+...+.++.+.+... .....|.|+|.+|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3688888888888877532 3344577999999999999999986
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.93 E-value=0.0068 Score=66.86 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=93.0
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
..++|.+..++++.+++.. ....+-|.|+|++|+|||++|+.+++. ... .++.++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~----~fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA----FFFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS----EEEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC----CEEEEEchH----
Confidence 3578999999999888742 244567899999999999999999853 222 222343221
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------HhHHHhh---hc--CC-C
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLI---FR--VP-G 310 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~~~~~l~---~~--~~-g 310 (830)
+...+. ..........+.. ..+++.+|+||+++.. .....+. .. .+ +
T Consensus 274 ------l~~~~~-------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ------IMSKLA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ------HHTSCT-------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ------hhhhhc-------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111100 0001111112221 2466789999999421 1112222 21 12 3
Q ss_pred ceEEEEecccc-cc-------cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCc-hHHHHHH
Q 003321 311 CKTLVVSRFKF-ST-------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVI 379 (830)
Q Consensus 311 s~iivTtr~~~-~~-------~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 379 (830)
..||.||.... +. .....+.++..+.++-.+++..++-........ ...++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCcHHHHHHH
Confidence 45555554432 11 223468899999999999998876322211111 235566677664 4334433
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.93 E-value=0.0043 Score=73.30 Aligned_cols=148 Identities=10% Similarity=0.102 Sum_probs=81.2
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---ccccc-cCCceEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSY-FNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~~-F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.++||+.++.++.+.|... ...-+.++|.+|+||||+|+.+++.- .+... ....++.++.+.-
T Consensus 187 ~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 5799999999999998743 44556899999999999999998531 11111 2222322221110
Q ss_pred hhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh----------Hh-HHHhhhcC--CCceEEEEecccc----
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------AV-LEQLIFRV--PGCKTLVVSRFKF---- 321 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~----------~~-~~~l~~~~--~gs~iivTtr~~~---- 321 (830)
+.+.. ........++..++.. ..++.+|++|+++.. .. ...+.... .+..+|.+|....
T Consensus 254 -~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 -LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp --CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred -hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence 00000 0001111122222223 335789999999854 11 22233222 2455665554321
Q ss_pred ------cccccceEEccCCCHHHHHHHHHHHh
Q 003321 322 ------STVLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 322 ------~~~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
.......+.++.++.++..+++...+
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11122368899999999988887543
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.93 E-value=0.0057 Score=63.57 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 185 GIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.+..++.+...+... .....+.++|++|+|||++|+.+++
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 467777777777666431 1245899999999999999999985
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.00076 Score=67.77 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=14.3
Q ss_pred CCcEeccccccccCcch-------hhhccCCCCcEEe
Q 003321 742 CLKYLNISQCVSLSCLP-------QGIGNLIRLEKID 771 (830)
Q Consensus 742 ~L~~L~L~~c~~l~~lp-------~~l~~l~~L~~L~ 771 (830)
+|++|+|++|+.-..+| ..+..+++|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 55555555544333332 1244555565554
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.0089 Score=70.45 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=76.9
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccc---ccccc-cCCceEEEEecCCCCHHHHHHHHHH
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSY-FNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~---~~~~~-F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
.+|||+.++.++...|... ...-+.++|++|+|||++|+.+++.- .+... ....++.++.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-------------- 245 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------- 245 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc--------------
Confidence 5799999999999998753 33456799999999999999998531 01111 12222222220
Q ss_pred hhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCChHhHHHhhhcC--CCceEEEEeccccc--------c--ccc
Q 003321 260 FVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFRV--PGCKTLVVSRFKFS--------T--VLN 326 (830)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~l~~~~--~gs~iivTtr~~~~--------~--~~~ 326 (830)
.. . .......+...+... ..++.+|++| ...+....+.... ...++|.+|..... + ...
T Consensus 246 ---~~-~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 246 ---TK-Y--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred ---cc-c--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 00 0 001111222233222 4567899999 2222223333322 23556666554431 1 112
Q ss_pred ceEEccCCCHHHHHHHHHHHh
Q 003321 327 DTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~a 347 (830)
..+.++.++.++..+++....
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTT
T ss_pred cEEEeCCCCHHHHHHHHHHHH
Confidence 568999999999999998654
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.87 E-value=0.0009 Score=61.03 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-..++|+|+.|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.011 Score=68.75 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=91.7
Q ss_pred ccccccchhhHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCH
Q 003321 183 LMGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (830)
..+.|.+..+++|.+++.- . ...+-|-++|++|+|||+||+++++. ...+ .+.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~----~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF----FFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE----EEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe----EEEEEhHH----
Confidence 3567888888888887621 1 34678999999999999999999953 3322 23444321
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccchHHHHh-hcCCcEEEEEeCCCCh-------------HhHHHhh---hcCC---C
Q 003321 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------AVLEQLI---FRVP---G 310 (830)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-l~~kr~LlVlDdv~~~-------------~~~~~l~---~~~~---g 310 (830)
+... . .......++..++. ....+++|+||+++.. .....+. .+.. +
T Consensus 274 ------l~sk----~---~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 274 ------IMSK----L---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------HHSS----C---TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred ------hhcc----c---chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1100 0 00011111222221 2456899999998742 0122222 2221 3
Q ss_pred ceEEEEecccc-c--c-----cccceEEccCCCHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003321 311 CKTLVVSRFKF-S--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (830)
Q Consensus 311 s~iivTtr~~~-~--~-----~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlP 373 (830)
..||.||.... + + .....++++..+.++-.++|..+.-+....... ....|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 33444544332 1 1 234578899999999999998765322111111 2456788887764
No 228
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.70 E-value=0.011 Score=60.74 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
...+.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999999953
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.55 E-value=0.011 Score=59.68 Aligned_cols=44 Identities=25% Similarity=0.068 Sum_probs=32.4
Q ss_pred ccccchhhHHHHHHHhc-CCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 185 GIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|......++.+.+.. ......|.|+|.+|+|||++|+.+++.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 57888888887776643 123356779999999999999999853
No 230
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.52 E-value=0.05 Score=58.48 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=53.1
Q ss_pred cCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccccccccCcchh-hhccCCCCcEEeccCccCCccCCc-cccccc
Q 003321 713 IGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPK-SVNSLK 789 (830)
Q Consensus 713 i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~-~~~~l~ 789 (830)
+.++.+|+.+.+.. .+..++. .|..+.+|+.+.|.. .++.+.. .+.++++|+.+.|..+ +..++. .+.+|+
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCC
Confidence 44555666665532 3444443 366677888888764 3555543 4778888888888643 555654 577889
Q ss_pred cCceeecCchh
Q 003321 790 SLRQVICEEDV 800 (830)
Q Consensus 790 ~L~~l~~~~~~ 800 (830)
+|+.+.+.++.
T Consensus 358 ~L~~i~~~~~~ 368 (394)
T 4gt6_A 358 ALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEESSCH
T ss_pred CCCEEEECCce
Confidence 99998887653
No 231
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.37 E-value=0.045 Score=58.87 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=67.2
Q ss_pred cCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEeccccccccCcchh-hhccCC
Q 003321 689 ICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNLI 765 (830)
Q Consensus 689 i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~ 765 (830)
+..+..|+.+.+.... ++ ..+..+.+|+.+.+.. .+..++ ..+..+++|+.++|.. .++.++. .+.+++
T Consensus 272 F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccccccceeccCcee----ecccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 4455556655554321 22 3456677888888764 245554 3477888999999864 3666643 478889
Q ss_pred CCcEEeccCccCCccCC-ccccccccCceeecCch
Q 003321 766 RLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEED 799 (830)
Q Consensus 766 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~l~~~~~ 799 (830)
+|+.+++..+ +..++ ..+.++.+|+.+.+..+
T Consensus 344 ~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 344 SLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 9999998765 45554 46788999999987654
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0054 Score=63.47 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCC--CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 192 KNKVKEMVIGRD--DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 192 ~~~l~~~L~~~~--~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+.+.+++.... ....+.++|++|+|||+||+.+++.
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344445554321 2568889999999999999999963
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.0098 Score=58.09 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (830)
..-.++.|+|.+|+||||||..++. . -...++|++....++...+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEESSCCCCHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEECCCCCCHHHHHH
Confidence 4557999999999999999999985 1 123567887766556655543
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.11 E-value=0.014 Score=65.62 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=31.7
Q ss_pred cccccchhhHHHHHHHh-----cCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVI-----GRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~-----~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|.+.-+..+.+.+. ..-...++.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45676666666544432 112456899999999999999999985
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.03 E-value=0.0024 Score=65.19 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEe
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (830)
.-+++.|+|++|+||||||.++... .. ..+.|+++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~----~G--~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA----LG--GKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH----HH--TTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh----CC--CCEEEEEe
Confidence 3467789999999999999999853 11 23447777
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.02 E-value=0.066 Score=58.87 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=33.4
Q ss_pred ccccccchhhHHHHHHHhc--C---------CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|.+..+.++.++... . .-.+-+.|+|++|+||||||+.+++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468888877777766521 1 11234899999999999999999953
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.01 E-value=0.068 Score=53.42 Aligned_cols=45 Identities=29% Similarity=0.217 Sum_probs=30.2
Q ss_pred cccccchhhHHHHHHHhc--C---------CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..+.++.++... . .-.+-+.|+|++|+||||||+.+++.
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356666665555554321 0 11223899999999999999999953
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.95 E-value=0.063 Score=63.24 Aligned_cols=45 Identities=27% Similarity=0.137 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..++++.+++.. -.....|.|+|++|+||||||+.+++
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4578999999999988742 13456799999999999999999985
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.91 E-value=0.14 Score=51.68 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 003321 208 LGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~~ 228 (830)
+.++|++|.||||||+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999853
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.91 E-value=0.014 Score=68.66 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=78.2
Q ss_pred ccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHH
Q 003321 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (830)
..++|.+..++.+...+... .....+.++|++|+|||++|+.+++.. ..... .++.++.+.-..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l-~~~~~--~~i~i~~s~~~~----- 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI-FGDEE--SMIRIDMSEYME----- 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH-HSCTT--CEEEEEGGGGCS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCc--ceEEEechhccc-----
Confidence 35789998888888887531 123479999999999999999998532 11111 223454443211
Q ss_pred HHHHHhhcCCCCCCCCCCcccchHHHHhhcCCcEEEEEeCCCCh--HhHHHhhh---------------cCCCceEEEEe
Q 003321 255 AKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---------------RVPGCKTLVVS 317 (830)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~---------------~~~gs~iivTt 317 (830)
.... . ...+....+ ......|+||++... +....+.. .....+||+||
T Consensus 563 ---------~~~~-~---~~~l~~~~~--~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 ---------KHST-S---GGQLTEKVR--RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ---------SCCC-C------CHHHHH--HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ---------cccc-c---cchhhHHHH--hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0000 0 011111111 233458999999753 33333321 12356888888
Q ss_pred cccc-------------c-----ccccceEEccCCCHHHHHHHHHHH
Q 003321 318 RFKF-------------S-----TVLNDTYEVELLREDESLSLFCYS 346 (830)
Q Consensus 318 r~~~-------------~-----~~~~~~~~l~~L~~~e~~~Lf~~~ 346 (830)
.... . ...+.++.+++++.++-.+++...
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 7311 0 023357888999998888877654
No 241
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.48 E-value=0.13 Score=55.29 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=72.2
Q ss_pred ccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEeccccccccCcchh-hhccC
Q 003321 688 SICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNL 764 (830)
Q Consensus 688 ~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l 764 (830)
.+..+.+|+.+.+..+ ++.++ ..+.++.+|+.+.+.. .+..++ ..|.++++|+.+.+..+ +..++. .+.++
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTC
T ss_pred cccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCC
Confidence 4667889999999753 56665 4577889999999864 355564 45788899999999753 666654 48889
Q ss_pred CCCcEEeccCccCCccCCccccccccCcee
Q 003321 765 IRLEKIDMRECSQIWSLPKSVNSLKSLRQV 794 (830)
Q Consensus 765 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~l 794 (830)
++|+.+++..+ +..+...+.++++|+.+
T Consensus 366 ~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 99999998754 44455567777777654
No 242
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.23 E-value=0.031 Score=58.25 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhccccccc-ccCCceEEEEecCCC
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSP 248 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~ 248 (830)
++++.+..-..-..++|+|.+|+|||||++.+.+. +.. +=+..++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCCh
Confidence 45566654455679999999999999999998742 222 222234456666543
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.18 E-value=0.013 Score=56.67 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.+.+... +...+|+|+|++|.|||||++.+..
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 4567999999999999999999874
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.15 E-value=0.017 Score=55.59 Aligned_cols=38 Identities=32% Similarity=0.352 Sum_probs=28.9
Q ss_pred hhhHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 190 LGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 190 ~~~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+++.+.+... ....+|+|.|++|+||||+++.+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445566666532 4567999999999999999999874
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.15 E-value=0.051 Score=57.02 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCCHHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..+-.+|-+. ..-.++.|+|.+|+||||||..++........ -...++|++....++...+...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4444444322 45679999999999999999998743111111 2346779988887777766543
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.11 E-value=0.1 Score=61.41 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=34.9
Q ss_pred ccccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..++.+...+... .....+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 34688888888877776421 2335799999999999999999985
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.04 E-value=0.032 Score=58.44 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=37.5
Q ss_pred HHHHHHHh-cC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..+-.+|- .. ..-+++.|.|++|+||||||.+++.. ... -...++|++....++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~-~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQK-MGGVAAFIDAEHALDPV 104 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHH-TTCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHh-cCCeEEEEecccccchH
Confidence 44444443 22 45679999999999999999999843 221 22346688877766654
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.03 E-value=0.011 Score=55.37 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHH
Q 003321 206 SVLGICGIGGSGKTTLALEV 225 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v 225 (830)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.00 E-value=0.029 Score=56.96 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHHhccccccccc-CCceEEEEecCCCCHH
Q 003321 207 VLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVE 251 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~ 251 (830)
++-|.|++|+||||||.+++. .....+ ...++|++....++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH
Confidence 789999999999999999873 333332 4567799888877764
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.79 E-value=0.013 Score=54.95 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.75 E-value=0.016 Score=55.03 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+|+|+|++|+|||||++.+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999984
No 252
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.73 E-value=0.033 Score=60.03 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHH
Q 003321 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVW 258 (830)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~ 258 (830)
.++.|..-..-..++|+|.+|+|||||++.+..+ ....+...+.++.+++.. ...++...+.
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4555533223346899999999999999999853 333333333456666543 2344554443
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.71 E-value=0.015 Score=54.14 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.70 E-value=0.016 Score=55.61 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.|+|++|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.016 Score=54.65 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999985
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.49 E-value=0.019 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999984
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.41 E-value=0.016 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 258
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.40 E-value=0.023 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|++|.||||+|+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.27 E-value=0.022 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999984
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.27 E-value=0.023 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|+.|.|||||++.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.18 E-value=0.024 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.-.+++|+|+.|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999865
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.15 E-value=0.038 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|.+|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998874
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.027 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|++|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 456999999999999999999984
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.14 E-value=0.026 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+|+|+|++|.||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.08 E-value=0.024 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999984
No 266
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.07 E-value=0.61 Score=49.81 Aligned_cols=99 Identities=15% Similarity=0.310 Sum_probs=55.5
Q ss_pred cCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCcEeccccccccCcchh-hhccCC
Q 003321 689 ICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLKYLNISQCVSLSCLPQ-GIGNLI 765 (830)
Q Consensus 689 i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~ 765 (830)
+.++++|+.+.+.. .+..++ ..+.++.+|+.+.|.. .+..+. ..|..+.+|+.+.|.. .++.++. .+.+++
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 44566666666643 344554 3456677788777754 244443 3466777788877753 3555543 477778
Q ss_pred CCcEEeccCccCCccCCccccccccCceeec
Q 003321 766 RLEKIDMRECSQIWSLPKSVNSLKSLRQVIC 796 (830)
Q Consensus 766 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~l~~ 796 (830)
+|+.+++.++.... ..+....+|+.+.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 88888777654211 23444555655543
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.05 E-value=0.027 Score=53.41 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+++|+|++|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999973
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.04 E-value=0.021 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.03 E-value=0.022 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999984
No 270
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.02 E-value=0.044 Score=57.55 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
..-+++.|+|.+|+||||||.+++.. .... ...++|++....++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVAN--AQAA-GGIAAFIDAEHALDPE 104 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEECCCCcCHH
Confidence 45679999999999999999998742 2211 2457789888766653
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.99 E-value=0.027 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.98 E-value=0.038 Score=52.27 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=28.8
Q ss_pred hhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 191 GKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 191 ~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-...+..++.+-+..+.+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 35666666654334457999999999999999998853
No 273
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.97 E-value=0.12 Score=61.47 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHhcC--------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.+..+..+...+... .....+.|+|++|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689988888888777431 1235889999999999999999985
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.96 E-value=0.031 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 275
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.87 E-value=0.032 Score=54.03 Aligned_cols=25 Identities=48% Similarity=0.565 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|+.|.|||||++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999999874
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.84 E-value=0.03 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.|+|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999984
No 277
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.83 E-value=0.031 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 278
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.81 E-value=1.4 Score=46.59 Aligned_cols=101 Identities=13% Similarity=0.278 Sum_probs=53.8
Q ss_pred CCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccch-hhcCCCCCcEeccccccccCcchh-hhccCCC
Q 003321 690 CGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPA-RICELVCLKYLNISQCVSLSCLPQ-GIGNLIR 766 (830)
Q Consensus 690 ~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~c~~l~~lp~-~l~~l~~ 766 (830)
.++.+|+.+.+..+ +..+. ..+.++.+|+.+.+.. .+..++. .+..+++|+.+.+.+ ..++.++. .+.++.+
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCC
Confidence 34445555555432 33332 2344555666666543 2333432 355667777777754 23444443 3667777
Q ss_pred CcEEeccCccCCccCCc-cccccccCceeecC
Q 003321 767 LEKIDMRECSQIWSLPK-SVNSLKSLRQVICE 797 (830)
Q Consensus 767 L~~L~l~~~~~l~~lp~-~~~~l~~L~~l~~~ 797 (830)
|+.+.|..+ ++.++. .+.++++|+.+.+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 777777543 444443 46667777776553
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.81 E-value=0.03 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.77 E-value=0.034 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|++|+||||+++.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 281
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.77 E-value=0.11 Score=51.43 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCCHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLR 254 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~ 254 (830)
..-.++.|+|++|+||||||+.++........ -..+++|++....+....+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 76 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL 76 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH
Confidence 35569999999999999999998842112110 13456688776655555443
No 282
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.75 E-value=0.028 Score=52.78 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 283
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.75 E-value=0.032 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 284
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.74 E-value=0.036 Score=53.43 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|++|.||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999974
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.73 E-value=0.025 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999974
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.73 E-value=0.028 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 287
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.70 E-value=0.046 Score=53.08 Aligned_cols=109 Identities=10% Similarity=-0.080 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 283 (830)
.-.++.|.|..|.||||++..+.+. ...+- .+++.+...... . -...+++.++.... ..........++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g-~kVli~~~~~d~--r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYAD-VKYLVFKPKIDT--R-SIRNIQSRTGTSLP---SVEVESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTT-CCEEEEEECCCG--G-GCSSCCCCCCCSSC---CEEESSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcC-CEEEEEEeccCc--h-HHHHHHHhcCCCcc---ccccCCHHHHHHHH
Confidence 4568899999999999999988743 22221 134344333221 1 11122222211110 00011112222222
Q ss_pred ----c-CCcEEEEEeCCCC--hHhHHHhhh-cCCCceEEEEecccc
Q 003321 284 ----L-GSRCLVVLDDVWS--LAVLEQLIF-RVPGCKTLVVSRFKF 321 (830)
Q Consensus 284 ----~-~kr~LlVlDdv~~--~~~~~~l~~-~~~gs~iivTtr~~~ 321 (830)
. ++.-+||+|.+.. .++++.+.. .-.|..||+|.+...
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 2 2345999999974 344443332 113888999988543
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.70 E-value=0.035 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 289
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.65 E-value=0.036 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+||.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.64 E-value=0.045 Score=58.11 Aligned_cols=44 Identities=32% Similarity=0.242 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHhc------------C--CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 185 GIGMALGKNKVKEMVIG------------R--DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 185 ~vgr~~~~~~l~~~L~~------------~--~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
++|.+..++.+...+.. . ...+.|.++|++|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 57777777777776620 1 13467899999999999999999853
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.64 E-value=0.028 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999874
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.64 E-value=0.028 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 293
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.62 E-value=0.04 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|++|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.61 E-value=0.033 Score=53.44 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999984
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.57 E-value=0.038 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.56 E-value=0.037 Score=55.13 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..+|+|+|++|+|||||++.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999983
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.56 E-value=0.038 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|.|++|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.55 E-value=0.034 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999984
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.53 E-value=0.041 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.52 E-value=0.037 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|+|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999984
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.52 E-value=0.041 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999984
No 302
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.48 E-value=0.63 Score=48.66 Aligned_cols=159 Identities=11% Similarity=-0.044 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCC
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYV 272 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 272 (830)
+++.+.+. ..-.++..++|..|.||++.|+.+.... ....|+... .+.+....++.++...+...
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~------------ 71 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHH-TFSIDPNTDWNAIFSLCQAM------------ 71 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEE-EEECCTTCCHHHHHHHHHHH------------
T ss_pred HHHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeE-EEEecCCCCHHHHHHHhcCc------------
Confidence 34455554 3456799999999999999999887421 122343211 22333344454444332111
Q ss_pred cccchHHHHhhcCCcEEEEEeCCCC---hHhHHHhhh---c-CCCceEEEEeccc-------ccc----cccceEEccCC
Q 003321 273 IPHWNLQIQSKLGSRCLVVLDDVWS---LAVLEQLIF---R-VPGCKTLVVSRFK-------FST----VLNDTYEVELL 334 (830)
Q Consensus 273 ~~~~~~~~~~l~~kr~LlVlDdv~~---~~~~~~l~~---~-~~gs~iivTtr~~-------~~~----~~~~~~~l~~L 334 (830)
.+-+++-++|+|+++. .+.++.+.. . .+++.+|++|... .+. .....++..++
T Consensus 72 ---------plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 72 ---------SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp ---------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred ---------CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 1235677889999865 344444443 2 3467777666431 111 23457888899
Q ss_pred CHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 003321 335 REDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (830)
Q Consensus 335 ~~~e~~~Lf~~~af~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 378 (830)
+.++-.......+-..+- ...++.+..+++.++|.+.++..
T Consensus 143 ~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CTTHHHHHHHHHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 998888777666522211 22345788899999998877654
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.47 E-value=0.036 Score=54.29 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999973
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.43 E-value=0.043 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999999874
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.37 E-value=0.042 Score=52.95 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 306
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.36 E-value=0.059 Score=55.53 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|+.|+||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3566999999999999999999863
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.36 E-value=0.031 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 308
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.35 E-value=0.044 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.33 E-value=0.048 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.32 E-value=0.043 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|++.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.28 E-value=0.042 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|+|||||++.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999974
No 312
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.21 E-value=0.11 Score=54.67 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=38.0
Q ss_pred hHHHHHHHh-cC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 192 KNKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 192 ~~~l~~~L~-~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
...+-.+|- .. ..-+++.|.|.+|+||||||.+++.. .... ...++|++....++..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~-g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPI 106 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEeCCCCccHH
Confidence 344444442 22 45679999999999999999998743 2211 2356789887776643
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.19 E-value=0.042 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 314
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.15 E-value=0.11 Score=53.94 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhccccccccc---CCceEEEEecCCCCHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~l~~~ 256 (830)
..-.++.|+|.+|+||||||.+++........+ ...++|++....++...+...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~ 161 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM 161 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 455699999999999999999987432111111 346779988887777766543
No 315
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.14 E-value=0.038 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 316
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.14 E-value=0.078 Score=54.97 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.....|.|+|++|+||||+++.++.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4566799999999999999999874
No 317
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.14 E-value=0.059 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999985
No 318
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.12 E-value=0.12 Score=54.50 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=37.9
Q ss_pred hHHHHHHHh-cC-CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 192 KNKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 192 ~~~l~~~L~-~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
...|-.+|- .. ..-+++.|.|.+|+||||||.++... .... ...++|++....++..
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~-g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKA-GGTCAFIDAEHALDPV 117 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCEEEEESSCCCCHH
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHC-CCeEEEEECCCChhHH
Confidence 344444443 12 45568999999999999999998743 2211 2357799888776654
No 319
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.12 E-value=0.052 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++++|+.|.|||||++.++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556999999999999999999985
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.10 E-value=0.056 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.09 E-value=0.071 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 322
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.07 E-value=0.039 Score=53.75 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.03 E-value=0.055 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|+.|.|||||++.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999999874
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.00 E-value=0.051 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 325
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.99 E-value=0.19 Score=52.00 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=42.7
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
...+-+++.+-..-.++.|.|.+|+||||||..++.+...+. ..++|++.. .+..++...+....
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHHH
Confidence 344445552225667999999999999999999874322222 345566655 56677777776554
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.98 E-value=0.1 Score=54.77 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=59.7
Q ss_pred HHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcc
Q 003321 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIP 274 (830)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 274 (830)
+.+++. ..-.+++|+|+.|.|||||.+.+... +.......+ +.+.+..... .......+. .... ......
T Consensus 115 l~~l~~--~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i--~t~ed~~e~~--~~~~~~~v~-q~~~-~~~~~~ 184 (356)
T 3jvv_A 115 FKRVSD--VPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI--LTIEDPIEFV--HESKKCLVN-QREV-HRDTLG 184 (356)
T ss_dssp HHHHHH--CSSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE--EEEESSCCSC--CCCSSSEEE-EEEB-TTTBSC
T ss_pred HHHHHh--CCCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE--EEccCcHHhh--hhcccccee-eeee-ccccCC
Confidence 444443 33459999999999999999998742 211112222 2333221100 000000000 0000 000011
Q ss_pred cchHHHHhhcCCcEEEEEeCCCChHhHHHhhh-cCCCceEEEEecccc
Q 003321 275 HWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIF-RVPGCKTLVVSRFKF 321 (830)
Q Consensus 275 ~~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~-~~~gs~iivTtr~~~ 321 (830)
........+...+=+|++|.+.+.+.++.+.. ...|..|++||-...
T Consensus 185 ~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 185 FSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred HHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccCh
Confidence 11123344567788899999998877766443 334767777776543
No 327
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.96 E-value=0.038 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.87 E-value=0.052 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 329
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.86 E-value=0.051 Score=51.63 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 330
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.85 E-value=0.056 Score=56.51 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=33.2
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|++..+..+...+... .-+.++|++|+|||+||+.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHH
Confidence 4578888888877777542 3678999999999999999985
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.84 E-value=0.054 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 332
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.83 E-value=0.18 Score=54.16 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHHh
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGF 260 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~ 260 (830)
++++.|..-..-.-++|+|.+|+|||+|++.+.+.. .+.+-+. ++++-+++.. .+.++.+.+.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v-~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGY-SVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSE-EEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCE-EEEEECCCcchHHHHHHHHhhhc
Confidence 456666533455689999999999999999988531 1222233 3466677654 355666666543
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.83 E-value=0.057 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|+.|.||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999983
No 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.83 E-value=0.059 Score=54.73 Aligned_cols=45 Identities=29% Similarity=0.217 Sum_probs=31.5
Q ss_pred cccccchhhHHHHHHHhc--C---------CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIG--R---------DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~--~---------~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..+.++.++... . .-.+-+.|+|++|+||||||+.+++.
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 467777776666655421 0 11123899999999999999999953
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.83 E-value=0.056 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 336
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.82 E-value=0.061 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|.++|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999984
No 337
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.80 E-value=0.17 Score=54.65 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC-CHHHHHHHHHH
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (830)
++++.|..-..-.-++|+|.+|+|||+|++.+.++. .+.+-+. ++++-+++.. ...++...+.+
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v-~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGV-SVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSC-EEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCE-EEEEEcccCcHHHHHHHHhhhc
Confidence 345666543455679999999999999999988531 1223343 4477777655 45667777654
No 338
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.79 E-value=0.06 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999874
No 339
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.76 E-value=0.17 Score=51.83 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (830)
..-.+++|+|.+|+|||||++.++...... -...++|+... .+..++...+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc--CCHHHHHHHHHHH
Confidence 556799999999999999999988532221 12245566543 2445555555443
No 340
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.75 E-value=0.082 Score=58.19 Aligned_cols=42 Identities=10% Similarity=-0.088 Sum_probs=32.9
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..++.+...+... .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHH
Confidence 4578887777777666532 46789999999999999999853
No 341
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.75 E-value=0.06 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (830)
++.+||+|.|=|||||||.|-.+.- ... ....++.-++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA-~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFS-ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHH-HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHH-HCCCeEEEEecCC
Confidence 5789999999999999999988762 222 1233566777764
No 342
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.72 E-value=0.13 Score=53.52 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCCCCCCCCcccchHHHHhhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 284 (830)
-.+++|+|+.|.|||||++.+..-... +.+.+.+.-......... . ..+. .-......+.......+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~----~~g~i~i~~~~e~~~~~~-~---~~i~----~~~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEIVFKHH-K---NYTQ----LFFGGNITSADCLKSCLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT----TSCEEEEESSCCCCCSSC-S---SEEE----EECBTTBCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC----CCcEEEECCeeccccccc-h---hEEE----EEeCCChhHHHHHHHHhh
Confidence 458999999999999999999853221 223333331111100000 0 0000 000011111122233456
Q ss_pred CCcEEEEEeCCCChHhHHHhhhcCCCc-eEEEEeccc
Q 003321 285 GSRCLVVLDDVWSLAVLEQLIFRVPGC-KTLVVSRFK 320 (830)
Q Consensus 285 ~kr~LlVlDdv~~~~~~~~l~~~~~gs-~iivTtr~~ 320 (830)
.++=+|++|++.+.+.++.+.....|. -+++||-..
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECS
T ss_pred hCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEccc
Confidence 677889999999877666555433443 356666543
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.71 E-value=0.039 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 344
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.71 E-value=0.086 Score=57.82 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.2
Q ss_pred ccccccchhhHHHHHHH---hcC-CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 183 LMGIGMALGKNKVKEMV---IGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L---~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..++|.+..++.+..++ ... ...+-+.++|++|+|||++|+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 45689888877655544 222 23457889999999999999999953
No 345
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.70 E-value=0.066 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999874
No 346
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.64 E-value=0.062 Score=52.21 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999999853
No 347
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.62 E-value=0.15 Score=53.02 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=42.3
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhccccccc---------ccC----CceEEEEecCCCCHHHHHHH
Q 003321 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTS---------YFN----NRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~---------~F~----~~~~wv~v~~~~~~~~l~~~ 256 (830)
..+-.+|-.. ..-+++.|+|.+|+||||||.+++....... ... ..++|++....++..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 4444444222 4567999999999999999999874321111 111 46779988888777776644
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.60 E-value=0.064 Score=51.90 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.55 E-value=0.063 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..+|+|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999874
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.53 E-value=0.06 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.51 E-value=0.064 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 352
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.49 E-value=0.09 Score=54.74 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (830)
-++++.+..-..-.-++|+|.+|+|||+|++.+.+.-. +++=+..++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~-~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA-ENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH-HHCTTSEEEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh-hcCCCeEEEEEEeccC
Confidence 35667775434556889999999999999999886321 1122223345555544
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.48 E-value=0.036 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|.|+.|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.46 E-value=0.11 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|+|+.|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999874
No 355
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.41 E-value=0.069 Score=54.26 Aligned_cols=24 Identities=46% Similarity=0.744 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999987
No 356
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.37 E-value=0.057 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998753
No 357
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.36 E-value=0.26 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.||||+++.+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4557999999999999999999874
No 358
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.33 E-value=0.061 Score=50.65 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=63.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC---CCHHHHHHHHHHhh--cCCCCCCCCCC--------
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS---PNVEQLRAKVWGFV--SGCDSMEPNYV-------- 272 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~---~~~~~l~~~i~~~l--~~~~~~~~~~~-------- 272 (830)
..|-|++..|.||||.|-... .+...+ ..++..+..-+. .....++..+.-.+ .+....-....
T Consensus 29 g~i~v~tG~GkGKTTaA~Gla--lRA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTA--ARAVGH-GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHH--HHHHHT-TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH--HHHHHC-CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 466677777799999998876 232222 124545544332 23333333331000 00000000000
Q ss_pred cccchHHHHhh-cCCcEEEEEeCCCC--------h-HhHHHhhhcCCCceEEEEecccccc---cccceEEccC
Q 003321 273 IPHWNLQIQSK-LGSRCLVVLDDVWS--------L-AVLEQLIFRVPGCKTLVVSRFKFST---VLNDTYEVEL 333 (830)
Q Consensus 273 ~~~~~~~~~~l-~~kr~LlVlDdv~~--------~-~~~~~l~~~~~gs~iivTtr~~~~~---~~~~~~~l~~ 333 (830)
...+....+.+ .++-=|||||++-. . +.++.+....+...||+|+|..... ..+.+-++..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 01122223333 35556999999842 2 3344555556688999999997643 3444455544
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.33 E-value=0.092 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
....+|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998853
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.31 E-value=0.074 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+|+|.|+.|.||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.27 E-value=0.068 Score=50.87 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.25 E-value=0.081 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|.|.|+.|+||||+|+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999984
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.24 E-value=0.068 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 364
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.23 E-value=0.073 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+. .+++|+|+.|.|||||.+.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 56 8999999999999999999984
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.20 E-value=0.064 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 366
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.20 E-value=0.072 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|++|+|||||++.++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999974
No 367
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.19 E-value=0.071 Score=57.39 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=32.5
Q ss_pred ccccccchhhHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 183 LMGIGMALGKNKVKEMVIGR-------------DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.+..+..+...+... ...+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34577777777666555210 1345688999999999999999984
No 368
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.17 E-value=0.049 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=16.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHh
Q 003321 204 DLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.-.+++|+|+.|+|||||++.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.17 E-value=0.085 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHh
Q 003321 205 LSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..+|+|.|+.|+||||+|+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 370
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.17 E-value=0.07 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHh
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
..-.+++|+|++|+|||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345799999999999999999887
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.14 E-value=0.075 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|+|.|++|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999984
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.11 E-value=0.074 Score=51.58 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.04 E-value=0.084 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+++|+|+.|+||||+++.++.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457999999999999999999884
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.01 E-value=0.083 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 375
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.00 E-value=0.091 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999984
No 376
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.98 E-value=0.09 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|++|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 377
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.98 E-value=0.077 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.+..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4556999999999999999999984
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.97 E-value=0.065 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-.+|+|+|+.|.||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 379
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.97 E-value=0.081 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.93 E-value=0.08 Score=51.35 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.92 E-value=0.076 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 382
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.74 E-value=0.083 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999984
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.73 E-value=0.098 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
....+|+|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998853
No 384
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.63 E-value=0.089 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4456999999999999999999975
No 385
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.59 E-value=0.14 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.....+++|+|+.|+||||+++.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999875
No 386
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.58 E-value=0.076 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-.+++|+|+.|.|||||++.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 387
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.57 E-value=0.2 Score=52.48 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhccccccccc---CCceEEEEecCCCCHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVE 251 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~ 251 (830)
..-+++.|+|++|+|||||+..++......... ...++|++....+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 456799999999999999999988432111111 2355688766554333
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.56 E-value=0.1 Score=53.47 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=27.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEe
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (830)
....+|+|+|.+|+||||++..++... ... ..++.++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~-g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF--VDE-GKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH--HHT-TCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH--Hhc-CCEEEEEcc
Confidence 356799999999999999999988432 221 335655544
No 389
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.51 E-value=0.095 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999973
No 390
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.51 E-value=0.091 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.291 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 456999999999999999999974
No 391
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.49 E-value=0.16 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+|+|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999884
No 392
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.47 E-value=0.11 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999984
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.47 E-value=0.093 Score=52.59 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556999999999999999999984
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.45 E-value=0.098 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 395
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.43 E-value=0.38 Score=49.81 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=43.2
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
...+-+++.+-..-.++.|.|.+|+||||+|..++.+... ....++|++. .-+..++...++....
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3444444432355679999999999999999998853222 2334556554 4566777777766543
No 396
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.43 E-value=0.45 Score=51.11 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 578999999999999999998874
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.38 E-value=0.1 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 398
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.30 E-value=0.1 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456999999999999999999984
No 399
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.27 E-value=0.099 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||++.+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3456999999999999999999984
No 400
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.26 E-value=0.1 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.+++|+|+.|.|||||.+.++.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4556999999999999999999984
No 401
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.24 E-value=0.33 Score=52.90 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=45.7
Q ss_pred ccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
|...+...+-+++.+-..-.++.|.|.+|+||||+|..++.+ +.......++|++.. -+..++...++...
T Consensus 182 ~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 182 GVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp -CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 444455566666622255679999999999999999998843 222223356676554 45667777766544
No 402
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.24 E-value=0.087 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999984
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.23 E-value=0.1 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.21 E-value=0.11 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999885
No 405
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.18 E-value=0.09 Score=55.34 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=30.1
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|.+..+..+...+.. ....-+.|+|++|+|||++|+.+++.
T Consensus 25 ~i~G~~~~~~~l~~~~~~-~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVD-PGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GSCSCHHHHHHHHHHHHC-GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhC-CCCceEEEECCCCccHHHHHHHHHHh
Confidence 467877655444333332 22234889999999999999999853
No 406
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.17 E-value=0.19 Score=46.69 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 003321 208 LGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 208 i~I~G~~GiGKTtLA~~v~~ 227 (830)
+.|+|.+|.||||+|.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999999984
No 407
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.17 E-value=0.11 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.+++|+|+.|.|||||.+.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4557999999999999999999984
No 408
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.16 E-value=0.1 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456999999999999999999984
No 409
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.10 E-value=0.11 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446999999999999999999985
No 410
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.10 E-value=0.13 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|.|+|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999999984
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.10 E-value=0.11 Score=51.58 Aligned_cols=24 Identities=46% Similarity=0.637 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999984
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.08 E-value=0.11 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.04 E-value=0.11 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.01 E-value=0.11 Score=50.27 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.97 E-value=0.13 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 416
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.93 E-value=0.11 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556999999999999999999984
No 417
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.92 E-value=0.17 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 5667999999999999999999874
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.91 E-value=0.19 Score=49.18 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.89 E-value=0.14 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999853
No 420
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.87 E-value=0.12 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.+..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456999999999999999999984
No 421
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.86 E-value=0.12 Score=50.69 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHH
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (830)
.-.+++|+|++|+|||||++.++..... -...+.|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHH
Confidence 4469999999999999999998843221 123455665433 34444433
No 422
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.85 E-value=0.3 Score=53.39 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=43.8
Q ss_pred ccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHH
Q 003321 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (830)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (830)
|...+...+-+++.+-..-.++.|.|.+|+||||||..++.+... .....++|++.. .+..++...++.
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECC--CCHHHHHHHHHH
Confidence 344445555555532356679999999999999999998853222 122346676554 345666666554
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.82 E-value=0.12 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556999999999999999999984
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.82 E-value=0.12 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556999999999999999999985
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.79 E-value=0.076 Score=54.14 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 426
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.78 E-value=0.52 Score=54.74 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=70.9
Q ss_pred cccccchhhHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHH
Q 003321 184 MGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (830)
.+.|.+..++++.+.+.-. ...+-|.++|++|.|||.+|+++++. .... ++.++. .
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~------f~~v~~----~ 545 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN------FISIKG----P 545 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE------EEECCH----H
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc------eEEecc----c
Confidence 3456666666666654210 23455789999999999999999953 2222 233321 1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccchHHHHhh-cCCcEEEEEeCCCCh----------------HhHHHhhh---cCC--
Q 003321 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------------AVLEQLIF---RVP-- 309 (830)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~----------------~~~~~l~~---~~~-- 309 (830)
.++....+ .....+...++.- ...++.|++|+++.. .....|+. +..
T Consensus 546 ----~l~s~~vG-------ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 546 ----ELLTMWFG-------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ----HHHTTTCS-------SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ----hhhccccc-------hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 12111111 1122223333322 457899999998732 01233332 222
Q ss_pred CceEEEEeccccc----c-----cccceEEccCCCHHHHHHHHHHHh
Q 003321 310 GCKTLVVSRFKFS----T-----VLNDTYEVELLREDESLSLFCYSA 347 (830)
Q Consensus 310 gs~iivTtr~~~~----~-----~~~~~~~l~~L~~~e~~~Lf~~~a 347 (830)
...++|.+.+... + ..+..+.++..+.++-.++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2233443333321 1 235678888888877788887654
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.76 E-value=0.029 Score=53.12 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=32.7
Q ss_pred hhhcccCceEEEccc-cCCccccCC-CCCCCCccccCeeeecccccC-----ccCCCccccCCCceEEeeecccc
Q 003321 587 IENMEKLRALIVINY-STSNAALGN-FSVCSNLTNLRSLWLEKVSIS-----QLPKSSIPLKKMQKISFVLCKIN 654 (830)
Q Consensus 587 i~~l~~Lr~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~ 654 (830)
+.+-+.|+.|++.++ ......... ...+..-+.|+.|+|++|.+. .+.+.+..-+.|+.|+|+.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344566777777653 322111000 012333456677777776665 23333334455555555555443
No 428
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.75 E-value=0.21 Score=51.48 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP 248 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~ 248 (830)
...++|+|+|-||+||||+|..+.. ..... ..++..++.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~-G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSIL-GKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHT-TCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHC-CCeEEEEeCCCCC
Confidence 4678999999999999999998873 22222 3466677776433
No 429
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.71 E-value=0.12 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 446899999999999999999984
No 430
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.69 E-value=0.14 Score=52.87 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEe
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (830)
...++|+|+|.+|+||||++..++.. ... -..++.++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~-~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY--YAE-LGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH--HHH-TTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHH-CCCeEEEEeC
Confidence 45689999999999999999998743 222 2345655544
No 431
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.64 E-value=0.2 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.....+|+|+|.+|+|||||+..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999999999874
No 432
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.59 E-value=0.14 Score=55.36 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.++|+|+|.+|+||||+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999874
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.58 E-value=0.13 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4456999999999999999999984
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.56 E-value=0.035 Score=52.52 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=58.5
Q ss_pred CccccCeeeeccc-ccC-----ccCCCccccCCCceEEeeeccccccccccccCcCCCCCccceeccccccccCcccccc
Q 003321 616 NLTNLRSLWLEKV-SIS-----QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSI 689 (830)
Q Consensus 616 ~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~i 689 (830)
+-+.|+.|+|+++ .+. .+.+.+..-..|+.|+|++|.+...-.. .+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~------------------------alA~aL 94 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR------------------------GLIELI 94 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT------------------------THHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH------------------------HHHHHH
Confidence 4467888888875 554 2344444455666666666554422111 122222
Q ss_pred CCCCCCCEEEeeCcCCCC----ccchhcCCCCCCCEEEcccCCC--CC-----ccchhhcCCCCCcEeccccc
Q 003321 690 CGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPH--LR-----TLPARICELVCLKYLNISQC 751 (830)
Q Consensus 690 ~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~l~~~~~--l~-----~lp~~~~~l~~L~~L~L~~c 751 (830)
..=+.|++|+|++|.... .+...+..-+.|+.|+|++|.. +. .+...+..-++|+.|+++.+
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 233456666666654322 2334455555677777765422 22 13334455567777777653
No 435
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.55 E-value=0.46 Score=50.62 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=38.0
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhcccccccc---cCCceEEEEecCCCCHHHH
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQL 253 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l 253 (830)
...+-++|-.. ..-.++.|+|.+|+|||||+..++-.-..... -...++|++....+....+
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl 229 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 229 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence 34444445322 45579999999999999999976521111110 1235668877666655544
No 436
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.55 E-value=0.13 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.+++|+|+.|.|||||.+.++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999984
No 437
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.53 E-value=0.13 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3456899999999999999999984
No 438
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.51 E-value=0.14 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.49 E-value=0.13 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.47 E-value=0.14 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 003321 206 SVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.46 E-value=0.22 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++++|+|++|.|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5667999999999999999999984
No 442
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.40 E-value=0.14 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4567999999999999999999874
No 443
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.36 E-value=0.19 Score=54.23 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
.+.++|.++|.+|+||||+|..+... .......++..++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 45789999999999999999998842 332223356566554
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.36 E-value=0.13 Score=48.24 Aligned_cols=21 Identities=48% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999985
No 445
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.29 E-value=0.14 Score=50.25 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+|+|.|+.|.||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999984
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.26 E-value=0.17 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
+-|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999854
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.13 E-value=0.14 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.-.++.|+|++|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456999999999999999999874
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.04 E-value=0.17 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
....+|+|.|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999883
No 449
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.02 E-value=0.75 Score=45.03 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHh
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
++++..+.. -+.+.|+|..|.||||+.....
T Consensus 67 ~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 344444432 2588999999999998766553
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.98 E-value=0.17 Score=50.59 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999974
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.97 E-value=0.17 Score=47.68 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-+.|.|.|++|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999974
No 452
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.97 E-value=0.28 Score=48.70 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.4
Q ss_pred hHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 192 KNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 192 ~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-+..++... .+..-|.++|++|.|||.+|..+++
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34566677654 4456899999999999999999985
No 453
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.92 E-value=0.15 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 454
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.90 E-value=0.23 Score=53.38 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
..+||.++|.+|+||||++..+.... +. -..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~-~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KK-RGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HH-TTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HH-cCCeEEEEecC
Confidence 47899999999999999999987432 22 12355455543
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.88 E-value=0.13 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4567999999999999999999974
No 456
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.78 E-value=0.18 Score=51.44 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEec
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (830)
..++++|+|.+|+||||++..++... .. -..++.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~--~~-~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY--KG-KGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH--HH-TTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HH-cCCeEEEecCC
Confidence 45799999999999999999988432 22 13456555543
No 457
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.70 E-value=1 Score=48.15 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC-CCCCCCcccchHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS-MEPNYVIPHWNLQIQ 281 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~-~~~~~~~~~~~~~~~ 281 (830)
...++..|.|.+|.||||+.++.++. .....+ ....... .++-+.+..... .........+...+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~--------~~~lVl-TpT~~aa----~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF--------EEDLIL-VPGRQAA----EMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT--------TTCEEE-ESCHHHH----HHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc--------CCeEEE-eCCHHHH----HHHHHHhhhcCccccccceEEEeHHhhc
Confidence 56789999999999999999998841 122222 2222223 333333321110 111122233333222
Q ss_pred hhcC-C---cEEEEEeCCCC--hHhHHHhhhcCCCceEEEEecccc
Q 003321 282 SKLG-S---RCLVVLDDVWS--LAVLEQLIFRVPGCKTLVVSRFKF 321 (830)
Q Consensus 282 ~l~~-k---r~LlVlDdv~~--~~~~~~l~~~~~gs~iivTtr~~~ 321 (830)
.-.. + --.||+|++.. ...+..+....+..++|+.--...
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTS
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCccc
Confidence 1111 1 34799999863 345665655555567766655443
No 458
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.66 E-value=0.36 Score=52.37 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=44.9
Q ss_pred ccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhh
Q 003321 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (830)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (830)
|...+...+-+++.+-..-.++.|.|.+|+||||+|..++.+...+ ...++|++.. -+..++...++...
T Consensus 179 gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 179 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 4444556666666322566799999999999999999988532222 3456566544 44556666665543
No 459
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.59 E-value=0.17 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999853
No 460
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.56 E-value=0.17 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999984
No 461
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.54 E-value=0.26 Score=45.61 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.....|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999754
No 462
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.41 E-value=0.32 Score=48.10 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (830)
..-.++.|.|.+|+|||++|.+++.+ ........+++++.. .+..++...+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~--~~~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK--GAEEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH--HHHHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCceeeccc--CCHHHHHHHHH
Confidence 34569999999999999999987632 111222345465544 44555555543
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.41 E-value=0.19 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|+|.|+.|+||||||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35899999999999999999984
No 464
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.40 E-value=0.38 Score=50.22 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhccccccc-ccCCceEEEEecCCCCHH
Q 003321 202 RDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSPNVE 251 (830)
Q Consensus 202 ~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~ 251 (830)
....+++.+.|-||+||||+|..+.. .... .-..++..++.....+..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCChH
Confidence 45678999999999999999999873 2321 234467677766444433
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.38 E-value=0.18 Score=49.77 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (830)
..-.++.|.|.+|+||||||.+++.. ... -...++|++... ...++...+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~--~~~-~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN--GLK-MGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH--HHH-TTCCEEEEESSS--CHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHh-cCCeEEEEEccC--CHHHHHHHH
Confidence 34569999999999999999887632 111 133566776543 344444433
No 466
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.37 E-value=0.21 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..|+++|.+|+|||||...+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999863
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.32 E-value=0.2 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...|+|.|+.|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.20 E-value=0.23 Score=56.48 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=32.9
Q ss_pred cccccchhhHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhc
Q 003321 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.++|.+..++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhc
Confidence 4688877777766666532 5889999999999999999985
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.19 E-value=0.28 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=17.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-..|.|.|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.15 E-value=0.19 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
+.-.+++|+|+.|.|||||.+.++.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4556999999999999999999975
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.08 E-value=0.19 Score=45.74 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999754
No 472
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.06 E-value=0.33 Score=49.36 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (830)
.++|+|.|-||+||||+|..+.. ..... ..++..++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~-G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEM-GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHC-CCeEEEEecCCC
Confidence 47889999999999999999873 22222 345667777643
No 473
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.00 E-value=0.2 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
.--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998754
No 474
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.95 E-value=0.2 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.87 E-value=0.22 Score=63.25 Aligned_cols=86 Identities=17% Similarity=0.066 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhcCCCC-C--CCCCCcccchHH
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS-M--EPNYVIPHWNLQ 279 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~-~--~~~~~~~~~~~~ 279 (830)
...++|-|+|++|+|||+||.++... ...+ ..++.|+++.+.++... ++.++.... . ...+..+.....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~-G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 46789999999999999999998742 2222 33566888887776655 223221100 0 000111122222
Q ss_pred HHhh--cCCcEEEEEeCCC
Q 003321 280 IQSK--LGSRCLVVLDDVW 296 (830)
Q Consensus 280 ~~~l--~~kr~LlVlDdv~ 296 (830)
.+.+ ..+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 2222 4678899999994
No 476
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.72 E-value=0.25 Score=45.26 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998854
No 477
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.66 E-value=0.34 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...-|+++|.+|+|||||...+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 334678999999999999999875
No 478
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.64 E-value=3.3 Score=43.70 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCccceeccccccccCccc-cccCCCCCCCEEEeeCcCCCCccc-hhcCCCCCCCEEEcccCCCCCccc-hhhcCCCCCc
Q 003321 668 LPCLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLP-ARICELVCLK 744 (830)
Q Consensus 668 ~~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~ 744 (830)
+.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+.++ .+..++ ..|.++++|+
T Consensus 239 ~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 239 MKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCC
T ss_pred CccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCC
Confidence 445555555432 33333 2355677778777754 245554 34567778888877653 344443 3466777888
Q ss_pred EeccccccccCcchh-hhccCCCCcEEeccC
Q 003321 745 YLNISQCVSLSCLPQ-GIGNLIRLEKIDMRE 774 (830)
Q Consensus 745 ~L~L~~c~~l~~lp~-~l~~l~~L~~L~l~~ 774 (830)
.+.|.. .++.++. .+.++++|+.+.+..
T Consensus 314 ~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 887753 3555543 366777777776643
No 479
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.62 E-value=0.38 Score=48.31 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCC
Q 003321 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (830)
++|+|.|-||+||||+|..+.. ..... ..++..++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~-G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAM-GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTT-TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHC-CCcEEEEcCCCC
Confidence 6888899999999999998873 22221 335667776543
No 480
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.61 E-value=0.2 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..++++|.|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 468999999999999999999985
No 481
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.60 E-value=0.22 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999999854
No 482
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.59 E-value=0.34 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999884
No 483
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.59 E-value=0.21 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 003321 207 VLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~ 227 (830)
-|+++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999875
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.53 E-value=0.22 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4556999999999999999999974
No 485
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.49 E-value=0.23 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 486
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.45 E-value=0.29 Score=52.31 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccc--------cccCCceEEEEecCCC-CHHHHHHHHHH
Q 003321 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------SYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (830)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~--------~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (830)
+.++.|..-..-.-++|.|.+|+|||+|+..+.+..... ++=+..++++-+++.. .+.++.+.+.+
T Consensus 136 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 345555432334567899999999999999998764442 1112234466666553 35556665543
No 487
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.27 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcc
Q 003321 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 204 ~~~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
....|+|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999854
No 488
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.42 E-value=0.35 Score=50.16 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=31.3
Q ss_pred CC-ceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHH
Q 003321 203 DD-LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (830)
Q Consensus 203 ~~-~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (830)
++ .+++.+.|-||+||||+|..+.. ...+. ..++..++.....+...
T Consensus 11 ~gm~~i~v~sgKGGvGKTTvA~~LA~--~lA~~-G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 11 KGKTTFVFIGGKGGVGKTTISAATAL--WMARS-GKKTLVISTDPAHSLSD 58 (324)
T ss_dssp TTBCEEEEEEESTTSSHHHHHHHHHH--HHHHT-TCCEEEEECCSSCCHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHH--HHHHC-CCcEEEEeCCCCcCHHH
Confidence 45 45666778999999999999873 33332 44666777665555443
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.42 E-value=0.18 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
.....|+|.|+.|+||||+|+.+.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999998874
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.34 E-value=0.23 Score=51.90 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
..-.+++|+|+.|.|||||.+.++.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 3456999999999999999999984
No 491
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.30 E-value=0.24 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.4
Q ss_pred eEEEEEcCCCChHHHHHHHHh
Q 003321 206 SVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~ 226 (830)
.+.+|+|..|.|||||+.+++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999986
No 492
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.25 E-value=0.64 Score=51.55 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCCCHHHHHHHHHHhhc
Q 003321 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (830)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (830)
..+-+++-+-..-.++.|.|.+|+||||||.+++.+ +.......++|++... +..++...++....
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 344444432245679999999999999999998843 3222233566776543 56677777665543
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.15 E-value=0.27 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.15 E-value=0.24 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcc
Q 003321 206 SVLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 206 ~vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 495
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.12 E-value=0.69 Score=48.40 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcccccccccCCceEEEEecCCC
Q 003321 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP 248 (830)
Q Consensus 203 ~~~~vi~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~ 248 (830)
...+++.+.|-||+||||+|..+.. ..... ..++..++.....
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~--~lA~~-G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGV--YLAEK-GLKVVIVSTDPAH 66 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHH--HHHHS-SCCEEEEECCTTC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--HHHHC-CCeEEEEeCCCCC
Confidence 4455666678999999999998873 22222 3466666665433
No 496
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.07 E-value=0.25 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 497
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.05 E-value=0.25 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+|+|.+|+|||||...+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.03 E-value=0.31 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 003321 207 VLGICGIGGSGKTTLALEVCRD 228 (830)
Q Consensus 207 vi~I~G~~GiGKTtLA~~v~~~ 228 (830)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 499
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.01 E-value=0.37 Score=49.36 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=25.5
Q ss_pred hHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHh
Q 003321 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVC 226 (830)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLA~~v~ 226 (830)
++++.+.+. -.+++++|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc----CcEEEEECCCCCCHHHHHHHHH
Confidence 566666664 3589999999999999999997
No 500
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.99 E-value=0.26 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 003321 205 LSVLGICGIGGSGKTTLALEVCR 227 (830)
Q Consensus 205 ~~vi~I~G~~GiGKTtLA~~v~~ 227 (830)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
Done!