Query 003322
Match_columns 830
No_of_seqs 257 out of 528
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 21:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 5E-27 1.7E-31 218.5 12.9 120 270-392 3-127 (130)
2 2l7p_A Histone-lysine N-methyl 99.7 8.9E-19 3E-23 158.9 2.7 60 510-570 23-86 (100)
3 2e61_A Zinc finger CW-type PWW 99.6 3.4E-17 1.2E-21 139.9 3.1 51 509-560 12-67 (69)
4 4i1k_A B3 domain-containing tr 99.6 1.4E-14 4.7E-19 137.9 11.6 97 278-382 46-143 (146)
5 1yel_A AT1G16640; CESG, protei 99.4 1.4E-12 4.7E-17 116.4 10.3 93 278-380 8-100 (104)
6 4gut_A Lysine-specific histone 92.8 0.015 5.1E-07 67.8 -1.0 49 512-561 90-149 (776)
7 1na6_A Ecorii, restriction end 91.2 0.26 8.8E-06 54.3 6.4 91 278-368 18-123 (404)
8 1we9_A PHD finger family prote 83.8 0.41 1.4E-05 39.1 1.7 31 511-541 18-54 (64)
9 1wee_A PHD finger family prote 83.8 0.56 1.9E-05 39.4 2.6 28 513-540 29-61 (72)
10 3kqi_A GRC5, PHD finger protei 79.5 0.69 2.4E-05 39.3 1.6 31 511-541 21-57 (75)
11 2lv9_A Histone-lysine N-methyl 76.8 1.6 5.4E-05 39.0 3.2 32 510-541 37-72 (98)
12 3o70_A PHD finger protein 13; 76.7 1.6 5.4E-05 36.9 3.0 29 512-540 30-62 (68)
13 2k16_A Transcription initiatio 74.5 2 6.9E-05 36.0 3.1 29 512-540 30-63 (75)
14 3o7a_A PHD finger protein 13 v 72.7 2.2 7.4E-05 33.9 2.7 29 512-540 15-47 (52)
15 2kgg_A Histone demethylase jar 67.5 2.4 8.3E-05 33.7 2.0 31 510-540 13-49 (52)
16 2ri7_A Nucleosome-remodeling f 67.2 1.1 3.9E-05 42.6 0.0 30 512-541 20-55 (174)
17 1wep_A PHF8; structural genomi 58.4 3.7 0.00013 35.0 1.6 30 512-541 24-59 (79)
18 2vpb_A Hpygo1, pygopus homolog 58.0 4.5 0.00015 33.9 2.0 15 510-524 19-34 (65)
19 3kv5_D JMJC domain-containing 57.3 2.2 7.7E-05 47.8 0.1 30 512-541 49-84 (488)
20 1wem_A Death associated transc 53.8 5.9 0.0002 33.4 2.1 14 512-525 27-40 (76)
21 3o27_A Putative uncharacterize 53.1 13 0.00046 32.1 4.1 41 341-381 23-63 (68)
22 1wew_A DNA-binding family prot 52.1 16 0.00056 31.1 4.6 31 511-541 26-68 (78)
23 2rsd_A E3 SUMO-protein ligase 44.8 14 0.00049 30.6 3.0 31 510-540 19-60 (68)
24 3lqh_A Histone-lysine N-methyl 34.6 13 0.00044 36.8 1.4 15 513-527 19-33 (183)
25 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.6 10 0.00036 33.3 0.1 10 515-524 2-11 (140)
26 1weu_A Inhibitor of growth fam 30.6 53 0.0018 29.4 4.5 29 513-541 47-81 (91)
27 2k75_A Uncharacterized protein 29.3 98 0.0034 27.6 6.1 45 316-381 40-87 (106)
28 2vb2_X Copper protein, cation 28.8 36 0.0012 30.0 3.1 27 354-380 59-86 (88)
29 2g6q_A Inhibitor of growth pro 28.7 30 0.001 28.6 2.4 28 513-540 22-55 (62)
30 2qcp_X Cation efflux system pr 28.1 38 0.0013 29.2 3.1 27 354-380 51-78 (80)
31 2xb1_A Pygopus homolog 2, B-ce 27.4 22 0.00076 32.1 1.5 16 511-526 15-31 (105)
32 1wen_A Inhibitor of growth fam 26.6 31 0.001 29.3 2.1 29 513-541 27-61 (71)
33 3c6w_A P28ING5, inhibitor of g 26.1 34 0.0011 28.0 2.2 28 513-540 20-53 (59)
34 2jmi_A Protein YNG1, ING1 homo 21.1 51 0.0017 29.4 2.5 29 513-541 37-71 (90)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.94 E-value=5e-27 Score=218.51 Aligned_cols=120 Identities=38% Similarity=0.717 Sum_probs=100.7
Q ss_pred cCCCCCcccccEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcccccc
Q 003322 270 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE 346 (830)
Q Consensus 270 s~~~ns~~~~LF~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~---~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLe 346 (830)
++..+....++|+|+||+|||++++||+||+++|+.|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt 80 (130)
T 1wid_A 3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT 80 (130)
T ss_dssp -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence 3556667789999999999999889999999999999999974 57899999999999999999999 556788885
Q ss_pred -CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCcCcchhhh
Q 003322 347 -GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 392 (830)
Q Consensus 347 -GWs~FVRsK~LqaGDtVvF~R~e-p~GkL~IGVRRa~~~~~s~q~~~ 392 (830)
||..||++|+|++||+|+|++.+ .+++|+|++||+..+. ++|++.
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 99999999999999999999986 3469999999998655 455443
No 2
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=8.9e-19 Score=158.90 Aligned_cols=60 Identities=33% Similarity=0.812 Sum_probs=55.4
Q ss_pred CCcCceEeccCcccccccCCCC----CCCCCcEeecCCCCCCCCCCCcccccchhHHHhHhCCCC
Q 003322 510 GEKIQWVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNN 570 (830)
Q Consensus 510 ge~~~WVQCD~C~KWRkLP~~~----~lP~kW~CsmN~WDp~~~sCsaPEE~~~~el~~LL~~~y 570 (830)
....+|||||.|+|||+||.++ .+|++|||+||+ |+.+++|++|||.++++|+.+|+++.
T Consensus 23 ~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~ 86 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86 (100)
T ss_dssp SSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred CCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence 4578999999999999999863 489999999998 99999999999999999999999975
No 3
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.65 E-value=3.4e-17 Score=139.85 Aligned_cols=51 Identities=35% Similarity=0.906 Sum_probs=47.1
Q ss_pred CCCcCceEecc--CcccccccCCCC---CCCCCcEeecCCCCCCCCCCCcccccchh
Q 003322 509 VGEKIQWVQCE--DCSKWRKVPANA---RLPSKWTCSGNLWDPERSVCSVAQELREE 560 (830)
Q Consensus 509 ~ge~~~WVQCD--~C~KWRkLP~~~---~lP~kW~CsmN~WDp~~~sCsaPEE~~~~ 560 (830)
.++..+||||| .|+|||+||..+ .+|++|||+||+ |+.+++|++|||.++.
T Consensus 12 ~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence 46789999999 999999999984 689999999999 9999999999999875
No 4
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.56 E-value=1.4e-14 Score=137.88 Aligned_cols=97 Identities=25% Similarity=0.295 Sum_probs=82.8
Q ss_pred cccEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCC
Q 003322 278 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 357 (830)
Q Consensus 278 ~~LF~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLeGWs~FVRsK~L 357 (830)
.+.|.|+|++|||....+|+||+..++.|||.. ...|.++|. |+.|.|+|.|+. +++++..||..||++++|
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~L 117 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENNL 117 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTTC
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcCC
Confidence 579999999999987668999999999999974 478899998 699999999982 355666799999999999
Q ss_pred CCCCEEEEEEecCCC-eEEEEEEeCC
Q 003322 358 QAGDIVTFSRLEPEG-KLVMGFRKAS 382 (830)
Q Consensus 358 qaGDtVvF~R~ep~G-kL~IGVRRa~ 382 (830)
++||+|+|...+... .|.|.|-|+.
T Consensus 118 ~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 118 GEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCEEEEEEecCCceEEEEEEEecc
Confidence 999999999986433 5778777754
No 5
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.38 E-value=1.4e-12 Score=116.44 Aligned_cols=93 Identities=14% Similarity=0.297 Sum_probs=76.3
Q ss_pred cccEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCC
Q 003322 278 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 357 (830)
Q Consensus 278 ~~LF~KvLTaSDVgslGRLVIPKk~AEs~FPpLd~~eG~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLeGWs~FVRsK~L 357 (830)
.+.|.|+|+++|.. .+|.||++.++.+.+.+ +..+.++|..|+.|.+++.++ ..+.++..||..||++++|
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~---~~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKR---GEKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEE---TTEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCcc--ceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEE---CCcEEEccChHHHHHHcCC
Confidence 47899999999944 79999999998766553 468999999999999999987 2344555699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 003322 358 QAGDIVTFSRLEPEGKLVMGFRK 380 (830)
Q Consensus 358 qaGDtVvF~R~ep~GkL~IGVRR 380 (830)
++||.|+|.... +..+.|-|=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6677766544
No 6
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.78 E-value=0.015 Score=67.84 Aligned_cols=49 Identities=27% Similarity=0.725 Sum_probs=38.6
Q ss_pred cCceEecc--CcccccccCCCC----CCCCCcEeecCCCCC-----CCCCCCcccccchhH
Q 003322 512 KIQWVQCE--DCSKWRKVPANA----RLPSKWTCSGNLWDP-----ERSVCSVAQELREEQ 561 (830)
Q Consensus 512 ~~~WVQCD--~C~KWRkLP~~~----~lP~kW~CsmN~WDp-----~~~sCsaPEE~~~~e 561 (830)
-+-||||- .|.|||+||... .++.+.+|.|-. +. .--.|+.||++-..+
T Consensus 90 l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (776)
T 4gut_A 90 LPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLE 149 (776)
T ss_dssp SCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHH
T ss_pred CcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhh
Confidence 47999999 999999999885 457899998864 22 356799999966555
No 7
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=91.23 E-value=0.26 Score=54.32 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=64.7
Q ss_pred cccEEEecccccCCCC----CcEEeehhhhhhcCCCCCCC----CCceEE--EEeCCCCeEEEEEEEcCC----CCCccc
Q 003322 278 TPLFEKMLSASDAGRI----GRLVLPKKCAEAYFPPISQP----EGLPLK--VQDSKGKEWIFQFRFWPN----NNSRMY 343 (830)
Q Consensus 278 ~~LF~KvLTaSDVgsl----GRLVIPKk~AEs~FPpLd~~----eG~~L~--v~D~~GK~W~FRfsyw~N----N~SR~Y 343 (830)
...|.|.|++.|++.. ..+.+|+..+..+||.|... +.+.+. +-|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4789999999999953 58999998788999988722 223333 234434455999999821 134468
Q ss_pred cccCch-hhhhccCCCCCCEEEEEEe
Q 003322 344 VLEGVT-PCIQNMQLQAGDIVTFSRL 368 (830)
Q Consensus 344 VLeGWs-~FVRsK~LqaGDtVvF~R~ 368 (830)
-|+.|. .+.=-....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888774 4556688899999988765
No 8
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.75 E-value=0.41 Score=39.12 Aligned_cols=31 Identities=19% Similarity=0.600 Sum_probs=20.9
Q ss_pred CcCceEeccCcccccccCC---C---CCCCCCcEeec
Q 003322 511 EKIQWVQCEDCSKWRKVPA---N---ARLPSKWTCSG 541 (830)
Q Consensus 511 e~~~WVQCD~C~KWRkLP~---~---~~lP~kW~Csm 541 (830)
....|||||.|..|=-+.= . +..++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 3578999999999944321 1 12367888854
No 9
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.75 E-value=0.56 Score=39.44 Aligned_cols=28 Identities=32% Similarity=0.831 Sum_probs=20.3
Q ss_pred CceEeccCcccccccCC---C--CCCCCCcEee
Q 003322 513 IQWVQCEDCSKWRKVPA---N--ARLPSKWTCS 540 (830)
Q Consensus 513 ~~WVQCD~C~KWRkLP~---~--~~lP~kW~Cs 540 (830)
..|||||.|..|--+.= . ..+|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999954431 1 1467899985
No 10
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=79.48 E-value=0.69 Score=39.25 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=20.5
Q ss_pred CcCceEeccCccccccc-----C-CCCCCCCCcEeec
Q 003322 511 EKIQWVQCEDCSKWRKV-----P-ANARLPSKWTCSG 541 (830)
Q Consensus 511 e~~~WVQCD~C~KWRkL-----P-~~~~lP~kW~Csm 541 (830)
....|||||.|..|=-. . ..+..++.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 35689999999999432 2 2223447888853
No 11
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.79 E-value=1.6 Score=38.99 Aligned_cols=32 Identities=19% Similarity=0.678 Sum_probs=23.8
Q ss_pred CCcCceEeccCcccccccC---C-CCCCCCCcEeec
Q 003322 510 GEKIQWVQCEDCSKWRKVP---A-NARLPSKWTCSG 541 (830)
Q Consensus 510 ge~~~WVQCD~C~KWRkLP---~-~~~lP~kW~Csm 541 (830)
.+...+||||.|.+|--+. . ...+|+.|+|..
T Consensus 37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 3567899999999996553 1 136788999964
No 12
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.73 E-value=1.6 Score=36.86 Aligned_cols=29 Identities=17% Similarity=0.759 Sum_probs=21.3
Q ss_pred cCceEeccCcccccccCCC----CCCCCCcEee
Q 003322 512 KIQWVQCEDCSKWRKVPAN----ARLPSKWTCS 540 (830)
Q Consensus 512 ~~~WVQCD~C~KWRkLP~~----~~lP~kW~Cs 540 (830)
...|||||.|..|--+.=- ..+|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 5679999999999654311 1567899985
No 13
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.49 E-value=2 Score=36.02 Aligned_cols=29 Identities=24% Similarity=0.731 Sum_probs=20.2
Q ss_pred cCceEeccCccccc-----ccCCCCCCCCCcEee
Q 003322 512 KIQWVQCEDCSKWR-----KVPANARLPSKWTCS 540 (830)
Q Consensus 512 ~~~WVQCD~C~KWR-----kLP~~~~lP~kW~Cs 540 (830)
...||+||.|..|= .|+......+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 45899999999995 233332334789994
No 14
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=72.67 E-value=2.2 Score=33.88 Aligned_cols=29 Identities=17% Similarity=0.737 Sum_probs=21.4
Q ss_pred cCceEeccCcccccccCCC-C---CCCCCcEee
Q 003322 512 KIQWVQCEDCSKWRKVPAN-A---RLPSKWTCS 540 (830)
Q Consensus 512 ~~~WVQCD~C~KWRkLP~~-~---~lP~kW~Cs 540 (830)
...+||||.|..|--+.=- + .+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 4689999999999655421 1 467889885
No 15
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.53 E-value=2.4 Score=33.66 Aligned_cols=31 Identities=26% Similarity=0.812 Sum_probs=20.7
Q ss_pred CCcCceEecc-CcccccccCC-CC----CCCCCcEee
Q 003322 510 GEKIQWVQCE-DCSKWRKVPA-NA----RLPSKWTCS 540 (830)
Q Consensus 510 ge~~~WVQCD-~C~KWRkLP~-~~----~lP~kW~Cs 540 (830)
.....||||| .|.+|=-+.= ++ ..+++|+|.
T Consensus 13 ~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 3457899999 8999955432 12 124778874
No 16
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.21 E-value=1.1 Score=42.60 Aligned_cols=30 Identities=20% Similarity=0.592 Sum_probs=20.7
Q ss_pred cCceEeccCccccccc---CCC---CCCCCCcEeec
Q 003322 512 KIQWVQCEDCSKWRKV---PAN---ARLPSKWTCSG 541 (830)
Q Consensus 512 ~~~WVQCD~C~KWRkL---P~~---~~lP~kW~Csm 541 (830)
...|||||.|..|=-. ... ...++.|+|..
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 5679999999999322 111 24578999864
No 17
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.39 E-value=3.7 Score=34.99 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.7
Q ss_pred cCceEeccCcccccccC---CC---CCCCCCcEeec
Q 003322 512 KIQWVQCEDCSKWRKVP---AN---ARLPSKWTCSG 541 (830)
Q Consensus 512 ~~~WVQCD~C~KWRkLP---~~---~~lP~kW~Csm 541 (830)
...|||||.|..|=-.. .. ...++.|+|..
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 59 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPD 59 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTT
T ss_pred CCceEEcCCCCCcEEeeecCcccccccCCCeEECCC
Confidence 57899999999993221 11 13468899864
No 18
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.03 E-value=4.5 Score=33.92 Aligned_cols=15 Identities=33% Similarity=1.004 Sum_probs=13.1
Q ss_pred CCcCceEecc-Ccccc
Q 003322 510 GEKIQWVQCE-DCSKW 524 (830)
Q Consensus 510 ge~~~WVQCD-~C~KW 524 (830)
.....||||| .|.+|
T Consensus 19 ~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 19 NDDQDAILCEASCQKW 34 (65)
T ss_dssp CTTSCEEEBTTTTCCE
T ss_pred CCCCCeEecccCcccc
Confidence 3567999999 99999
No 19
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=57.30 E-value=2.2 Score=47.78 Aligned_cols=30 Identities=17% Similarity=0.449 Sum_probs=20.5
Q ss_pred cCceEeccCcccccccC-----CC-CCCCCCcEeec
Q 003322 512 KIQWVQCEDCSKWRKVP-----AN-ARLPSKWTCSG 541 (830)
Q Consensus 512 ~~~WVQCD~C~KWRkLP-----~~-~~lP~kW~Csm 541 (830)
...|||||.|..|=-.. .. ...++.|+|..
T Consensus 49 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 49 NRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp TSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 57899999999994321 11 24467898853
No 20
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.76 E-value=5.9 Score=33.37 Aligned_cols=14 Identities=21% Similarity=0.793 Sum_probs=12.2
Q ss_pred cCceEeccCccccc
Q 003322 512 KIQWVQCEDCSKWR 525 (830)
Q Consensus 512 ~~~WVQCD~C~KWR 525 (830)
...|||||.|..|-
T Consensus 27 ~~~MI~Cd~C~~Wf 40 (76)
T 1wem_A 27 NRFMICCDRCEEWF 40 (76)
T ss_dssp SSCEEECSSSCCEE
T ss_pred CCCEEEeCCCCCcE
Confidence 46899999999994
No 21
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=53.08 E-value=13 Score=32.08 Aligned_cols=41 Identities=10% Similarity=0.313 Sum_probs=34.0
Q ss_pred ccccccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeC
Q 003322 341 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 381 (830)
Q Consensus 341 R~YVLeGWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGVRRa 381 (830)
..|.++==.+++++.+++.||.+.+.-.+.+|++++.++|-
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 34555545799999999999999998877799999999984
No 22
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.14 E-value=16 Score=31.05 Aligned_cols=31 Identities=32% Similarity=0.732 Sum_probs=21.8
Q ss_pred CcCceEecc--CcccccccC-----CCC-----CCCCCcEeec
Q 003322 511 EKIQWVQCE--DCSKWRKVP-----ANA-----RLPSKWTCSG 541 (830)
Q Consensus 511 e~~~WVQCD--~C~KWRkLP-----~~~-----~lP~kW~Csm 541 (830)
....||||| .|..|--+. ... ..|++|||..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 457999999 999995432 111 4678999953
No 23
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.80 E-value=14 Score=30.64 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=22.0
Q ss_pred CCcCceEecc--CcccccccCC-C--------CCCCCCcEee
Q 003322 510 GEKIQWVQCE--DCSKWRKVPA-N--------ARLPSKWTCS 540 (830)
Q Consensus 510 ge~~~WVQCD--~C~KWRkLP~-~--------~~lP~kW~Cs 540 (830)
.+...+|||| .|..|--+.= + ..+|++|||.
T Consensus 19 ~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 19 MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp SCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred cCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 3456899999 4999976541 1 2467899995
No 24
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=34.60 E-value=13 Score=36.83 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=12.6
Q ss_pred CceEeccCccccccc
Q 003322 513 IQWVQCEDCSKWRKV 527 (830)
Q Consensus 513 ~~WVQCD~C~KWRkL 527 (830)
..|||||.|..|=-.
T Consensus 19 ~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHS 33 (183)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCeEECCCCCcccch
Confidence 469999999999654
No 25
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.60 E-value=10 Score=33.33 Aligned_cols=10 Identities=40% Similarity=1.444 Sum_probs=8.8
Q ss_pred eEeccCcccc
Q 003322 515 WVQCEDCSKW 524 (830)
Q Consensus 515 WVQCD~C~KW 524 (830)
.||||.|..|
T Consensus 2 mi~c~~c~~w 11 (140)
T 2ku7_A 2 MMQCGKCDRW 11 (140)
T ss_dssp CCCCSCCSSC
T ss_pred ccccccCCCc
Confidence 6899999888
No 26
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.58 E-value=53 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.774 Sum_probs=19.1
Q ss_pred CceEeccC--cc-cccccCC-CC--CCCCCcEeec
Q 003322 513 IQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSG 541 (830)
Q Consensus 513 ~~WVQCD~--C~-KWRkLP~-~~--~lP~kW~Csm 541 (830)
..+|+||. |. .|=-+.= ++ ...++|||..
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~ 81 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 81 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTT
T ss_pred CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcC
Confidence 57999999 77 8944321 11 2347999964
No 27
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.34 E-value=98 Score=27.56 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=32.7
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeC
Q 003322 316 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKA 381 (830)
Q Consensus 316 ~~L~v~D~~GK~W~FRfsyw~NN~SR~YVLeGWs~FVRsK~LqaGDtVvF~R~---ep~GkL~IGVRRa 381 (830)
..+.+.|.+| .++++.| ++. |++||+|.|... .-+|++.+-+-+.
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~ 87 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDS 87 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTT
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCc
Confidence 4789999999 6899999 322 999999998732 2466666555443
No 28
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=28.84 E-value=36 Score=29.96 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=19.4
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE-EEEe
Q 003322 354 NMQLQAGDIVTFSRLEPEGKLVM-GFRK 380 (830)
Q Consensus 354 sK~LqaGDtVvF~R~ep~GkL~I-GVRR 380 (830)
-.+|++||.|.|.-...+|.|.| .+++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 47899999999977655666655 4443
No 29
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=28.71 E-value=30 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.769 Sum_probs=18.1
Q ss_pred CceEeccC--cc-cccccC---CCCCCCCCcEee
Q 003322 513 IQWVQCED--CS-KWRKVP---ANARLPSKWTCS 540 (830)
Q Consensus 513 ~~WVQCD~--C~-KWRkLP---~~~~lP~kW~Cs 540 (830)
..+|+||. |. .|=-+. ......++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcCcCCCCCEECc
Confidence 47999999 65 894332 112334789985
No 30
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=28.12 E-value=38 Score=29.24 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=19.2
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE-EEEe
Q 003322 354 NMQLQAGDIVTFSRLEPEGKLVM-GFRK 380 (830)
Q Consensus 354 sK~LqaGDtVvF~R~ep~GkL~I-GVRR 380 (830)
-.+|++||.|.|.-...+|.|.| .+++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 57899999999977655566655 4443
No 31
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=27.39 E-value=22 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=12.7
Q ss_pred CcCceEecc-Ccccccc
Q 003322 511 EKIQWVQCE-DCSKWRK 526 (830)
Q Consensus 511 e~~~WVQCD-~C~KWRk 526 (830)
....||||| .|..|=-
T Consensus 15 ~~~~mi~Cdd~C~~WfH 31 (105)
T 2xb1_A 15 DDQDAILCEASCQKWFH 31 (105)
T ss_dssp TTSCEEECTTTTCCEEE
T ss_pred CCCCEEEecCCcccccc
Confidence 345799998 9999943
No 32
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.58 E-value=31 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.774 Sum_probs=19.1
Q ss_pred CceEeccC--cc-cccccCC-CC--CCCCCcEeec
Q 003322 513 IQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSG 541 (830)
Q Consensus 513 ~~WVQCD~--C~-KWRkLP~-~~--~lP~kW~Csm 541 (830)
..+|+||. |. .|=-+.= ++ ...++|||..
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~ 61 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 61 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTT
T ss_pred CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCC
Confidence 57999999 87 7944331 12 2348999954
No 33
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.14 E-value=34 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.797 Sum_probs=18.1
Q ss_pred CceEeccC--cc-cccccC---CCCCCCCCcEee
Q 003322 513 IQWVQCED--CS-KWRKVP---ANARLPSKWTCS 540 (830)
Q Consensus 513 ~~WVQCD~--C~-KWRkLP---~~~~lP~kW~Cs 540 (830)
..+|+||. |. .|=-+. ......++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 47999999 87 794332 111233789985
No 34
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.12 E-value=51 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=18.0
Q ss_pred CceEeccCcc---cccccCC-CC--CCCCCcEeec
Q 003322 513 IQWVQCEDCS---KWRKVPA-NA--RLPSKWTCSG 541 (830)
Q Consensus 513 ~~WVQCD~C~---KWRkLP~-~~--~lP~kW~Csm 541 (830)
..+|+||.|. .|=-+.= ++ ...++|||..
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 71 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSH
T ss_pred CCEEEecCCCCccccCcCccCCCCcCCCCCccCCh
Confidence 4699999966 8944321 11 2236899853
Done!