Query 003323
Match_columns 830
No_of_seqs 313 out of 1022
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 1.5E-18 5.2E-23 149.6 4.3 66 578-643 6-71 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.2E-17 7.6E-22 138.0 7.1 66 578-643 6-71 (73)
3 2lk2_A Homeobox protein TGIF1; 99.7 1.2E-17 4E-22 148.4 5.7 60 585-644 11-70 (89)
4 3k2a_A Homeobox protein MEIS2; 99.7 3.4E-17 1.2E-21 136.4 6.2 62 584-645 3-64 (67)
5 1du6_A PBX1, homeobox protein 99.6 2.5E-16 8.6E-21 128.4 6.8 62 579-640 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.6 3.7E-16 1.3E-20 134.3 7.3 63 580-642 2-64 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 5E-16 1.7E-20 129.8 7.1 63 580-642 2-64 (73)
8 1k61_A Mating-type protein alp 99.6 6.6E-16 2.3E-20 124.5 6.9 59 582-640 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 7.4E-16 2.5E-20 132.4 6.6 62 582-643 5-66 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 2.5E-15 8.4E-20 129.8 7.6 61 579-639 27-87 (87)
11 2ecc_A Homeobox and leucine zi 99.4 3.8E-14 1.3E-18 122.6 4.7 61 581-644 5-65 (76)
12 1akh_A Protein (mating-type pr 99.4 1.4E-13 4.9E-18 111.0 6.3 56 580-638 6-61 (61)
13 2dmu_A Homeobox protein goosec 99.4 2.2E-13 7.6E-18 113.0 7.2 61 578-641 6-66 (70)
14 2cra_A Homeobox protein HOX-B1 99.4 2.7E-13 9.1E-18 112.7 7.4 61 578-641 6-66 (70)
15 1bw5_A ISL-1HD, insulin gene e 99.4 2.3E-13 7.9E-18 111.7 6.9 61 579-642 3-63 (66)
16 2da2_A Alpha-fetoprotein enhan 99.4 3.5E-13 1.2E-17 111.6 7.3 61 578-641 6-66 (70)
17 2e1o_A Homeobox protein PRH; D 99.4 3.4E-13 1.2E-17 112.0 7.1 61 578-641 6-66 (70)
18 2da4_A Hypothetical protein DK 99.4 1.1E-13 3.8E-18 117.6 4.0 63 579-641 8-71 (80)
19 2da1_A Alpha-fetoprotein enhan 99.4 3E-13 1E-17 112.0 6.2 61 578-641 6-66 (70)
20 2djn_A Homeobox protein DLX-5; 99.4 3.3E-13 1.1E-17 112.1 6.5 61 578-641 6-66 (70)
21 2dmq_A LIM/homeobox protein LH 99.4 4.7E-13 1.6E-17 113.4 7.4 61 578-641 6-66 (80)
22 1ig7_A Homeotic protein MSX-1; 99.4 5E-13 1.7E-17 106.8 6.8 57 580-639 1-57 (58)
23 2da3_A Alpha-fetoprotein enhan 99.4 4.5E-13 1.5E-17 113.1 6.6 60 579-641 17-76 (80)
24 2hdd_A Protein (engrailed home 99.4 5.2E-13 1.8E-17 108.1 6.5 58 579-639 3-60 (61)
25 2dmt_A Homeobox protein BARH-l 99.4 7.1E-13 2.4E-17 112.9 7.5 61 578-641 16-76 (80)
26 1jgg_A Segmentation protein EV 99.4 6E-13 2E-17 107.4 6.7 58 580-640 2-59 (60)
27 2k40_A Homeobox expressed in E 99.4 5.1E-13 1.7E-17 110.0 5.7 60 580-642 2-61 (67)
28 2h1k_A IPF-1, pancreatic and d 99.4 8E-13 2.7E-17 107.8 6.7 59 579-640 3-61 (63)
29 2dms_A Homeobox protein OTX2; 99.4 9.3E-13 3.2E-17 112.0 7.1 61 578-641 6-66 (80)
30 1fjl_A Paired protein; DNA-bin 99.3 1E-12 3.5E-17 112.0 7.1 60 579-641 18-77 (81)
31 3rkq_A Homeobox protein NKX-2. 99.3 1.2E-12 4.1E-17 103.8 6.6 57 579-638 2-58 (58)
32 2vi6_A Homeobox protein nanog; 99.3 1.3E-12 4.5E-17 106.1 7.0 58 580-640 4-61 (62)
33 2cue_A Paired box protein PAX6 99.3 1.4E-12 4.7E-17 111.1 7.4 62 578-642 6-67 (80)
34 1nk2_P Homeobox protein VND; h 99.3 1.5E-12 5.2E-17 110.1 7.2 61 579-642 9-69 (77)
35 2l7z_A Homeobox protein HOX-A1 99.3 1.7E-12 5.8E-17 109.0 7.1 60 579-641 7-66 (73)
36 2dn0_A Zinc fingers and homeob 99.3 1.5E-12 5.3E-17 109.8 6.5 60 579-641 8-67 (76)
37 1zq3_P PRD-4, homeotic bicoid 99.3 1.6E-12 5.6E-17 107.6 6.4 60 579-641 2-61 (68)
38 3a02_A Homeobox protein arista 99.3 2E-12 6.8E-17 104.4 6.6 56 583-641 3-58 (60)
39 2kt0_A Nanog, homeobox protein 99.3 3E-12 1E-16 109.3 7.5 61 578-641 21-81 (84)
40 1ahd_P Antennapedia protein mu 99.3 1.8E-12 6.2E-17 107.5 5.9 59 580-641 3-61 (68)
41 2da5_A Zinc fingers and homeob 99.3 2.8E-12 9.5E-17 108.4 7.0 59 580-641 8-66 (75)
42 1ftt_A TTF-1 HD, thyroid trans 99.3 2.9E-12 9.9E-17 106.1 6.9 59 580-641 3-61 (68)
43 1puf_A HOX-1.7, homeobox prote 99.3 3.7E-12 1.3E-16 107.7 7.5 62 578-642 12-73 (77)
44 3nar_A ZHX1, zinc fingers and 99.3 4.1E-12 1.4E-16 111.8 7.7 66 579-647 25-90 (96)
45 2cuf_A FLJ21616 protein; homeo 99.3 3.1E-12 1.1E-16 112.2 6.6 61 578-641 6-81 (95)
46 1yz8_P Pituitary homeobox 2; D 99.3 1.2E-12 4E-17 108.3 3.6 60 579-641 3-62 (68)
47 1wh5_A ZF-HD homeobox family p 99.3 3.7E-12 1.3E-16 109.6 6.7 62 579-640 17-79 (80)
48 1b8i_A Ultrabithorax, protein 99.3 3.8E-12 1.3E-16 109.0 6.6 60 579-641 20-79 (81)
49 2hi3_A Homeodomain-only protei 99.3 4.7E-12 1.6E-16 106.2 6.8 59 580-641 3-62 (73)
50 2m0c_A Homeobox protein arista 99.3 5.8E-12 2E-16 104.9 7.2 60 579-641 9-68 (75)
51 1uhs_A HOP, homeodomain only p 99.3 4.9E-12 1.7E-16 105.6 6.6 58 581-641 3-61 (72)
52 2ly9_A Zinc fingers and homeob 99.3 7.3E-12 2.5E-16 104.7 7.5 60 579-641 6-65 (74)
53 3a01_A Homeodomain-containing 99.3 3E-12 1E-16 112.5 5.2 61 579-642 17-77 (93)
54 3a03_A T-cell leukemia homeobo 99.3 5.3E-12 1.8E-16 101.0 6.2 53 585-640 3-55 (56)
55 2d5v_A Hepatocyte nuclear fact 99.3 5.1E-12 1.8E-16 119.9 6.7 62 578-642 96-157 (164)
56 3d1n_I POU domain, class 6, tr 99.2 8E-12 2.7E-16 117.8 7.5 58 579-639 93-150 (151)
57 2r5y_A Homeotic protein sex co 99.2 6.3E-12 2.2E-16 108.7 5.9 60 578-640 27-86 (88)
58 3nau_A Zinc fingers and homeob 99.2 8E-12 2.7E-16 106.0 5.7 54 586-642 11-64 (66)
59 2ecb_A Zinc fingers and homeob 99.2 1.2E-11 4.2E-16 109.4 6.7 57 582-641 14-70 (89)
60 1b72_A Protein (homeobox prote 99.2 8.6E-12 2.9E-16 109.8 5.4 61 578-641 33-93 (97)
61 2dmp_A Zinc fingers and homeob 99.2 2.2E-11 7.5E-16 106.4 6.9 57 582-641 16-72 (89)
62 1wh7_A ZF-HD homeobox family p 99.2 2.6E-11 8.8E-16 104.8 5.8 61 579-640 17-79 (80)
63 2e19_A Transcription factor 8; 99.2 4E-11 1.4E-15 99.5 6.4 54 583-639 7-60 (64)
64 1e3o_C Octamer-binding transcr 99.1 4.5E-11 1.5E-15 113.9 6.9 59 579-640 101-159 (160)
65 1au7_A Protein PIT-1, GHF-1; c 99.1 5.3E-11 1.8E-15 112.2 7.0 59 579-640 87-145 (146)
66 2cqx_A LAG1 longevity assuranc 99.1 3.9E-11 1.3E-15 101.4 4.7 59 580-641 9-68 (72)
67 2xsd_C POU domain, class 3, tr 99.1 6E-11 2.1E-15 114.0 6.5 61 579-642 99-159 (164)
68 2da6_A Hepatocyte nuclear fact 99.1 1.3E-10 4.4E-15 105.7 7.0 62 579-643 6-88 (102)
69 2l9r_A Homeobox protein NKX-3. 99.1 1.1E-10 3.9E-15 98.7 6.2 54 586-642 11-64 (69)
70 1lfb_A Liver transcription fac 99.0 1.7E-10 6E-15 103.5 5.7 63 580-645 10-93 (99)
71 3l1p_A POU domain, class 5, tr 99.0 1.2E-10 4.2E-15 110.6 4.8 60 578-640 95-154 (155)
72 1wi3_A DNA-binding protein SAT 99.0 7.9E-10 2.7E-14 95.1 7.1 62 577-640 5-66 (71)
73 1x2m_A LAG1 longevity assuranc 98.9 6.2E-10 2.1E-14 93.6 4.9 52 588-641 9-60 (64)
74 1mh3_A Maltose binding-A1 home 98.9 4.9E-10 1.7E-14 114.9 3.8 52 584-638 370-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.8 3.8E-09 1.3E-13 107.0 6.4 57 579-638 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 98.8 2.3E-09 7.8E-14 106.3 3.6 58 579-639 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.7 1.9E-08 6.5E-13 86.7 6.0 46 588-636 14-59 (71)
78 2nzz_A Penetratin conjugated G 96.0 0.0011 3.9E-08 50.9 -0.1 20 624-643 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.9 0.056 1.9E-06 46.8 3.0 44 586-632 13-56 (70)
80 3hug_A RNA polymerase sigma fa 74.2 2.3 7.7E-05 36.0 3.4 50 585-642 37-86 (92)
81 1tty_A Sigma-A, RNA polymerase 71.9 2.5 8.4E-05 35.7 3.1 54 586-647 19-76 (87)
82 1hlv_A CENP-B, major centromer 68.5 11 0.00036 33.3 6.5 50 581-636 3-52 (131)
83 2o8x_A Probable RNA polymerase 66.6 3.2 0.00011 32.5 2.5 50 585-642 15-64 (70)
84 1ku3_A Sigma factor SIGA; heli 65.0 3.5 0.00012 33.4 2.5 52 585-644 10-66 (73)
85 3mzy_A RNA polymerase sigma-H 62.8 4.6 0.00016 35.5 3.1 48 586-642 110-157 (164)
86 2elh_A CG11849-PA, LD40883P; s 61.2 9.4 0.00032 32.3 4.6 44 580-631 17-60 (87)
87 2p7v_B Sigma-70, RNA polymeras 58.9 2.9 9.8E-05 33.5 0.9 52 585-644 5-60 (68)
88 3t72_q RNA polymerase sigma fa 56.2 22 0.00076 31.6 6.3 62 586-651 20-81 (99)
89 1fse_A GERE; helix-turn-helix 55.5 15 0.00053 28.8 4.7 55 583-646 9-63 (74)
90 2rnj_A Response regulator prot 54.0 21 0.00071 30.1 5.5 54 585-647 29-82 (91)
91 2glo_A Brinker CG9653-PA; prot 53.2 18 0.00062 28.4 4.7 46 583-632 3-48 (59)
92 1je8_A Nitrate/nitrite respons 52.8 12 0.0004 31.4 3.7 54 585-647 21-74 (82)
93 1x3u_A Transcriptional regulat 52.3 12 0.00042 30.0 3.7 53 586-647 17-69 (79)
94 1tc3_C Protein (TC3 transposas 51.9 13 0.00043 26.3 3.3 42 585-634 5-46 (51)
95 1or7_A Sigma-24, RNA polymeras 50.8 8.6 0.00029 35.1 2.8 48 586-641 141-188 (194)
96 1rp3_A RNA polymerase sigma fa 50.5 6.5 0.00022 36.8 2.0 49 585-641 187-235 (239)
97 1s7o_A Hypothetical UPF0122 pr 50.2 13 0.00046 33.3 3.9 49 586-642 23-71 (113)
98 1xsv_A Hypothetical UPF0122 pr 47.4 14 0.00049 33.0 3.6 50 586-643 26-75 (113)
99 1p4w_A RCSB; solution structur 46.3 40 0.0014 29.6 6.3 55 583-646 32-86 (99)
100 2q1z_A RPOE, ECF SIGE; ECF sig 45.5 7 0.00024 35.5 1.3 47 586-640 136-182 (184)
101 3c57_A Two component transcrip 40.1 29 0.001 29.7 4.3 50 585-643 27-76 (95)
102 3clo_A Transcriptional regulat 33.8 47 0.0016 32.8 5.3 55 584-647 196-250 (258)
103 1jko_C HIN recombinase, DNA-in 31.8 25 0.00086 25.3 2.2 41 585-633 5-45 (52)
104 3lsg_A Two-component response 31.4 66 0.0023 27.1 5.1 41 590-633 3-43 (103)
105 1l0o_C Sigma factor; bergerat 28.1 12 0.00042 34.8 0.0 46 585-638 198-243 (243)
106 2q0o_A Probable transcriptiona 28.0 55 0.0019 31.7 4.5 54 583-645 173-226 (236)
107 2a6c_A Helix-turn-helix motif; 27.7 50 0.0017 27.0 3.6 24 612-635 34-57 (83)
108 1l9z_H Sigma factor SIGA; heli 27.7 45 0.0016 36.8 4.3 56 585-644 375-431 (438)
109 1iuf_A Centromere ABP1 protein 27.5 63 0.0022 29.7 4.6 51 580-633 6-60 (144)
110 2jpc_A SSRB; DNA binding prote 26.6 56 0.0019 24.9 3.5 35 613-647 17-51 (61)
111 1gs9_A Apolipoprotein E, APOE4 25.4 2.8E+02 0.0097 26.7 8.9 34 461-494 95-128 (165)
112 2jn6_A Protein CGL2762, transp 24.2 81 0.0028 26.5 4.4 46 584-635 4-49 (97)
113 3b7h_A Prophage LP1 protein 11 23.7 52 0.0018 25.7 2.9 23 612-634 23-45 (78)
114 2lfw_A PHYR sigma-like domain; 23.1 16 0.00055 33.3 -0.3 49 585-641 93-141 (157)
115 2xi8_A Putative transcription 21.4 45 0.0015 25.1 2.1 23 612-634 17-39 (66)
116 2r1j_L Repressor protein C2; p 21.3 46 0.0016 25.2 2.1 23 612-634 21-43 (68)
117 3bd1_A CRO protein; transcript 21.2 48 0.0016 26.7 2.2 23 612-634 14-36 (79)
118 3qq6_A HTH-type transcriptiona 20.9 62 0.0021 26.3 2.9 20 613-632 27-46 (78)
119 1zug_A Phage 434 CRO protein; 20.7 46 0.0016 25.5 2.0 25 612-636 19-43 (71)
120 2rn7_A IS629 ORFA; helix, all 20.5 1.9E+02 0.0066 24.5 6.1 49 583-632 4-53 (108)
121 3ulq_B Transcriptional regulat 20.4 1.1E+02 0.0038 26.2 4.5 53 584-645 28-80 (90)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=149.57 Aligned_cols=66 Identities=42% Similarity=0.812 Sum_probs=60.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhH
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmie 643 (830)
..+|+|+.|+++++.+|+.||.+|..||||+.++|..||.+|||+..||.+||+|+|+|.|+++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345666779999999999999999999999999999999999999999999999999999988763
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-17 Score=137.97 Aligned_cols=66 Identities=42% Similarity=0.765 Sum_probs=61.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhH
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmie 643 (830)
..+|+|..|+++++.+|+.||.+|..+|||+.++|..||.++||+..||.+||+|+|+|.||++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 345667779999999999999999999999999999999999999999999999999999998863
No 3
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=148.38 Aligned_cols=60 Identities=55% Similarity=0.897 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHH
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 644 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmiee 644 (830)
-||++++.+|++||.+|+.+|||++++|..||++|||+.+||+|||+|+|+|.||+++++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 499999999999999999999999999999999999999999999999999999988753
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.4e-17 Score=136.37 Aligned_cols=62 Identities=50% Similarity=0.960 Sum_probs=54.6
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHH
Q 003323 584 RGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEM 645 (830)
Q Consensus 584 R~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem 645 (830)
.+||++++.+|+.||.+|+.+|||+.++|..||.++||+..||.+||+|+|+|.||+++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 35999999999999999999999999999999999999999999999999999999998653
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.5e-16 Score=128.41 Aligned_cols=62 Identities=35% Similarity=0.670 Sum_probs=58.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|+.|+++++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35677789999999999999999999999999999999999999999999999999999874
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=3.7e-16 Score=134.29 Aligned_cols=63 Identities=37% Similarity=0.703 Sum_probs=59.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
+|+|+.|+++++.+|+.||.+|..+|||+.++|..||.++||+..||.+||+|+|+|.||.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 567778999999999999999999999999999999999999999999999999999998775
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.62 E-value=5e-16 Score=129.79 Aligned_cols=63 Identities=37% Similarity=0.703 Sum_probs=59.5
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
+|+|+.|+++++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 567778999999999999999999999999999999999999999999999999999988764
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.61 E-value=6.6e-16 Score=124.51 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=55.8
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 582 PQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 582 KRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
|++.|+++++.+|+.||..|+++|||+.++|..||.++||+..||.+||+|+|+|.||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 35679999999999999999999999999999999999999999999999999998874
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=7.4e-16 Score=132.45 Aligned_cols=62 Identities=26% Similarity=0.442 Sum_probs=58.0
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhH
Q 003323 582 PQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 582 KRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmie 643 (830)
+++.|+++++.+|+.||.+|+.+|||+.+++..||..+||+..||.+||+|+|+|.|+..+.
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34449999999999999999999999999999999999999999999999999999988763
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-15 Score=129.81 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=56.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcc
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 639 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKK 639 (830)
.+|+|..|+++++.+|+.||..|+.+|||+.++|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 3455566999999999999999999999999999999999999999999999999999863
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=3.8e-14 Score=122.59 Aligned_cols=61 Identities=21% Similarity=0.399 Sum_probs=56.1
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHH
Q 003323 581 RPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 644 (830)
Q Consensus 581 RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmiee 644 (830)
+++++|+++++.+|+.||.. +|||+.+++..||+.|||++.||.+||+|+|.|.||..+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 45567999999999999998 89999999999999999999999999999999998877643
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.43 E-value=1.4e-13 Score=110.99 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=48.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW 638 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK 638 (830)
+|+|..|+.+++.+|+.||.. +|||+.+++..||..+||+..||.+||+|+|.|.|
T Consensus 6 rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 6 PKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 456667999999999999999 89999999999999999999999999999999864
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=112.96 Aligned_cols=61 Identities=23% Similarity=0.410 Sum_probs=56.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35667778999999999999998 99999999999999999999999999999999988764
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=2.7e-13 Score=112.69 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=56.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34667778999999999999998 99999999999999999999999999999999998865
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.41 E-value=2.3e-13 Score=111.73 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=56.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||..+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 4567778999999999999999 999999999999999999999999999999999988654
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=111.59 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=56.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566777999999999999998 99999999999999999999999999999999998864
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=3.4e-13 Score=112.05 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=56.1
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34567778999999999999998 99999999999999999999999999999999988754
No 18
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=117.63 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=55.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEH-FLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eH-l~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+.+++.+|+.||..+ ..+|||+.+++..||.++||+..||.+||+|+|+|.||..
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45666679999999999999985 4449999999999999999999999999999999988743
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=112.00 Aligned_cols=61 Identities=20% Similarity=0.426 Sum_probs=56.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45667778999999999999998 89999999999999999999999999999999988764
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=112.13 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=56.2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 44667778999999999999987 99999999999999999999999999999999998754
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=113.36 Aligned_cols=61 Identities=23% Similarity=0.466 Sum_probs=56.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 35677778999999999999998 89999999999999999999999999999999998754
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=5e-13 Score=106.83 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=53.6
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcc
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 639 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKK 639 (830)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 466778999999999999998 999999999999999999999999999999999875
No 23
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=113.06 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=55.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+.+++.+|+.||.. +|||+.+++..||.++||+..||.+||+|+|.|.||..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 4566677999999999999998 89999999999999999999999999999999998764
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.38 E-value=5.2e-13 Score=108.14 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=52.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcc
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 639 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKK 639 (830)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567778999999999999998 999999999999999999999999999999999886
No 25
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.1e-13 Score=112.88 Aligned_cols=61 Identities=28% Similarity=0.347 Sum_probs=56.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34566677999999999999999 99999999999999999999999999999999998865
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.37 E-value=6e-13 Score=107.44 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=54.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 467778999999999999998 9999999999999999999999999999999998864
No 27
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=109.96 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=56.0
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
+|+|..|+.+++.+|+.||.. +|||+.+++..||..+||+..||.+||+|+|.|.||...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567778999999999999987 999999999999999999999999999999999988764
No 28
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.36 E-value=8e-13 Score=107.83 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=54.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4567778999999999999998 9999999999999999999999999999999998874
No 29
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=9.3e-13 Score=111.96 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=55.7
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 34667777999999999999999 99999999999999999999999999999999987643
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.35 E-value=1e-12 Score=111.97 Aligned_cols=60 Identities=25% Similarity=0.405 Sum_probs=55.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4566677999999999999998 99999999999999999999999999999999988754
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=103.76 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=52.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW 638 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK 638 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3566777999999999999987 99999999999999999999999999999999865
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.34 E-value=1.3e-12 Score=106.06 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 566677999999999999998 9999999999999999999999999999999999874
No 33
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.4e-12 Score=111.10 Aligned_cols=62 Identities=18% Similarity=0.324 Sum_probs=56.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 34567777999999999999988 999999999999999999999999999999999987653
No 34
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.33 E-value=1.5e-12 Score=110.12 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=55.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.+|+|..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||...
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 4556667999999999999998 999999999999999999999999999999999887654
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.33 E-value=1.7e-12 Score=109.03 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=55.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 4566677999999999999998 99999999999999999999999999999999998765
No 36
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=109.83 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=55.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+.|+.|+++++.+|+.||.. +|||+..++..||+++||+..||.+||+|+|.|.||..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3445667999999999999998 99999999999999999999999999999999998754
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=1.6e-12 Score=107.60 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=55.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 4567778999999999999988 99999999999999999999999999999999988654
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.32 E-value=2e-12 Score=104.40 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 456999999999999988 99999999999999999999999999999999998753
No 39
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=109.32 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=56.0
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566777999999999999998 99999999999999999999999999999999998754
No 40
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.31 E-value=1.8e-12 Score=107.52 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=54.8
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 466677999999999999998 99999999999999999999999999999999988754
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=108.40 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|++.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 355667999999999999999 99999999999999999999999999999999987654
No 42
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.30 E-value=2.9e-12 Score=106.12 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=54.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456667999999999999998 99999999999999999999999999999999988765
No 43
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.30 E-value=3.7e-12 Score=107.75 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=56.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
..+|+|..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34566677999999999999998 999999999999999999999999999999999987653
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.29 E-value=4.1e-12 Score=111.84 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=59.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
.+|+|+.|+..++.+|+.+|.. ++||+..++..||.++||+..||.+||+|+|.|.||..+..+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~~ 90 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 90 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHHH
Confidence 3567778999999999999998 99999999999999999999999999999999999988766544
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=3.1e-12 Score=112.23 Aligned_cols=61 Identities=20% Similarity=0.409 Sum_probs=55.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------CChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTG---------------LSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTG---------------LS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|++.++.+|+.||.+ +|||+..++..||..++ |+..||.+||+|+|+|.|+..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34566677999999999999999 99999999999999999 999999999999999987654
No 46
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.28 E-value=1.2e-12 Score=108.28 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=55.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3566777999999999999988 99999999999999999999999999999999988754
No 47
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.28 E-value=3.7e-12 Score=109.65 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFE-HFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~e-Hl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|..|+.+++.+|+.+|.. |+.+|||+..++..||..+||++.||.+||+|+|.|+++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 4566677999999999998885 6779999999999999999999999999999999998863
No 48
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.28 E-value=3.8e-12 Score=108.99 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=53.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566677999999999999998 99999999999999999999999999999999998864
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=4.7e-12 Score=106.16 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=53.8
Q ss_pred CCCCCCCChhHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 580 WRPQRGLPERSVNILRSWLF-EHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~-eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.++|..|+.+++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 35566799999999999998 6 89999999999999999999999999999999988744
No 50
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.27 E-value=5.8e-12 Score=104.92 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=55.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3455667999999999999998 99999999999999999999999999999999998754
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=4.9e-12 Score=105.60 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCCCCChhHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 581 RPQRGLPERSVNILRSWLF-EHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 581 RKRR~LPKeqv~ILraWF~-eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
++|+.|+.+++.+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 5667799999999999997 4 89999999999999999999999999999999988754
No 52
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.27 E-value=7.3e-12 Score=104.67 Aligned_cols=60 Identities=17% Similarity=0.395 Sum_probs=55.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.++.|..|+.+++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4566777999999999999998 99999999999999999999999999999999998754
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.26 E-value=3e-12 Score=112.49 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=56.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 4556667999999999999998 999999999999999999999999999999999887654
No 54
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=100.99 Aligned_cols=53 Identities=23% Similarity=0.432 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 4899999999999998 9999999999999999999999999999999998864
No 55
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.25 E-value=5.1e-12 Score=119.94 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=53.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
..+|+|..|+..++.+|+.||.. +|||+.++|..||..+||+..||.+||+|+|+|.||...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 34567777999999999999999 899999999999999999999999999999999987653
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.25 E-value=8e-12 Score=117.75 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=54.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcc
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 639 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKK 639 (830)
.+|+|..|+..++.+|+.||.. +|||+..++..||+++||+..||.+||+|+|.|.||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4455666999999999999999 999999999999999999999999999999999987
No 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.24 E-value=6.3e-12 Score=108.74 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=53.3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
..+|+|..|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45667778999999999999987 9999999999999999999999999999999998875
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.23 E-value=8e-12 Score=106.04 Aligned_cols=54 Identities=26% Similarity=0.535 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
-+++++.+|+.+|.. ++||+..|+..||..|||+..||.+||+|+|.|+|+..+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 479999999999999 999999999999999999999999999999999987654
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.2e-11 Score=109.37 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=52.3
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 582 PQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 582 KRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
+.+.|+.+++.+|+.||.. ++||+..+|..||..+||+..||.+||+|+|+|.+|..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3447999999999999998 99999999999999999999999999999999976544
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=8.6e-12 Score=109.82 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=53.8
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+|+|..|+.+++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566777999999999999988 99999999999999999999999999999999988754
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=106.40 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=51.8
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 582 PQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 582 KRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
+.++|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3445999999999999998 99999999999999999999999999999999876543
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.16 E-value=2.6e-11 Score=104.79 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=54.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFL--HPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~--nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|..|+.+++.+|+ -|.+++. ++||+..++..||..+||++.||.+||+|+|.|+++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 45666779999999999 5777655 9999999999999999999999999999999998863
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=4e-11 Score=99.50 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=49.9
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcc
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK 639 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKK 639 (830)
+..+.++++.+|+.+|.. ++||+..++..||+++||+..||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 344679999999999987 999999999999999999999999999999999875
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.14 E-value=4.5e-11 Score=113.93 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=53.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4566667999999999999999 9999999999999999999999999999999999875
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.13 E-value=5.3e-11 Score=112.22 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=53.9
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3556667999999999999999 9999999999999999999999999999999999874
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=3.9e-11 Score=101.44 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCCCCCChhHHHHHHHHH-HhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 580 WRPQRGLPERSVNILRSWL-FEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF-~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.|+++.++.+++.+|+..| .. ++||+..++..||.++||+..||.+||+|+|.|.|+.+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3555668899999999999 76 99999999999999999999999999999999988764
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.11 E-value=6e-11 Score=114.03 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=51.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.+|+|..|+..++.+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||...
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4556677999999999999999 999999999999999999999999999999999988653
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=105.68 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=55.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh---------------------CCChhhHhhhhhhhhhhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQT---------------------GLSRNQVSNWFINARVRL 637 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qT---------------------GLS~kQVsNWFiNaRrRl 637 (830)
.+|+|..|++.++.+|+.+|.. +|||+.++|..||..+ .|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566667999999999999998 9999999999999999 799999999999999998
Q ss_pred cchhhH
Q 003323 638 WKPMVE 643 (830)
Q Consensus 638 KKpmie 643 (830)
|+....
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 776543
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=98.67 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
++..++..|+.+|.. ++||+..+|..||+.+||+..||.+||+|+|.|.||...
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 688999999999998 999999999999999999999999999999999988664
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.03 E-value=1.7e-10 Score=103.46 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------hC---CChhhHhhhhhhhhhhhc
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQ------------------TG---LSRNQVSNWFINARVRLW 638 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~q------------------TG---LS~kQVsNWFiNaRrRlK 638 (830)
+|+|..|+..++.+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|.+.+
T Consensus 10 rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 10 RRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ---CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 456667999999999999998 999999999999999 78 999999999999999988
Q ss_pred chhhHHH
Q 003323 639 KPMVEEM 645 (830)
Q Consensus 639 Kpmieem 645 (830)
+.....+
T Consensus 87 ~k~~~~~ 93 (99)
T 1lfb_A 87 FRHKLAM 93 (99)
T ss_dssp CCC----
T ss_pred Hhchhhh
Confidence 7664433
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.03 E-value=1.2e-10 Score=110.57 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=54.5
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 578 EAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 578 e~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 34566677999999999999987 9999999999999999999999999999999998874
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.97 E-value=7.9e-10 Score=95.08 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=56.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 577 QEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 577 qe~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
...+|+|+.|+.++..+|+..|..- ++||+.++++.||.+|||++.+|..||+|+|.-.+..
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 3567888889999999999999873 7999999999999999999999999999999877654
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.93 E-value=6.2e-10 Score=93.58 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 588 ERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 588 Keqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
..+..+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.|.|+.+
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 44689999999432 89999999999999999999999999999999988643
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.90 E-value=4.9e-10 Score=114.88 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=49.2
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 003323 584 RGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW 638 (830)
Q Consensus 584 R~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK 638 (830)
+.|.+.++..|+++|.. +|||+..+|.+||++|||+++||++||+|||+|.|
T Consensus 370 ~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 370 AAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp CSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34899999999999988 99999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.81 E-value=3.8e-09 Score=106.99 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=51.6
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTG---------------------LSRNQVSNWFINARVRL 637 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTG---------------------LS~kQVsNWFiNaRrRl 637 (830)
.+|.|..|++.++.+|+.||.. +|||+..+|..||..|+ ||..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3455566999999999999999 99999999999999998 89999999999999985
Q ss_pred c
Q 003323 638 W 638 (830)
Q Consensus 638 K 638 (830)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.78 E-value=2.3e-09 Score=106.32 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=52.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 003323 579 AWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTG---------------------LSRNQVSNWFINARVRL 637 (830)
Q Consensus 579 ~~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTG---------------------LS~kQVsNWFiNaRrRl 637 (830)
.+|+|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|+|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3556667999999999999999 89999999999999999 99999999999999998
Q ss_pred cc
Q 003323 638 WK 639 (830)
Q Consensus 638 KK 639 (830)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=86.67 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 003323 588 ERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636 (830)
Q Consensus 588 Keqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrR 636 (830)
++++.+|++.|.. +|||+.+|+..||..+||.+..|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 999999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.96 E-value=0.0011 Score=50.87 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=17.8
Q ss_pred hhHhhhhhhhhhhhcchhhH
Q 003323 624 NQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 624 kQVsNWFiNaRrRlKKpmie 643 (830)
.||..||+|+|.|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999988865
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.92 E-value=0.056 Score=46.80 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFIN 632 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiN 632 (830)
.++...++|+.+|.+ |....+++...|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 356678999999999 67888999999999999999999999964
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=74.17 E-value=2.3 Score=36.03 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.||++.+.+|.-.|++. | .-.++|+.+|++...|.++...+|+++++.+.
T Consensus 37 ~L~~~~r~vl~l~~~~g----~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----W----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 38999999998877663 2 24689999999999999999999999986653
No 81
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=71.90 E-value=2.5 Score=35.73 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHH----hhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 586 LPERSVNILRSWLF----EHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 586 LPKeqv~ILraWF~----eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
||+..+.+|...|. + .+ .-.++|..+|++...|.+|...+++++++.+..+...
T Consensus 19 L~~~er~vl~l~~~l~~~~----~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~ 76 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGK----PK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLK 76 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHH
T ss_pred CCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999999988775 3 22 3467999999999999999999999999877654433
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=68.48 E-value=11 Score=33.28 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=38.6
Q ss_pred CCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 003323 581 RPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636 (830)
Q Consensus 581 RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrR 636 (830)
++|+.|+.+.+..+-.++.+ ++..+. ..+|+..|++...|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 45667999998877777766 566553 368999999999999998776543
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.59 E-value=3.2 Score=32.48 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
.||+..+.+|...|.+. + .-.++|...|++...|.+|...+|.++++.+.
T Consensus 15 ~L~~~~r~il~l~~~~g----~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG----L----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 48999999998876652 2 23589999999999999999999999987654
No 84
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.05 E-value=3.5 Score=33.41 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHHH----hhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-chhhHH
Q 003323 585 GLPERSVNILRSWLF----EHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW-KPMVEE 644 (830)
Q Consensus 585 ~LPKeqv~ILraWF~----eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK-Kpmiee 644 (830)
.||+..+.+|...|. + .+ .-.++|..+|++...|.+|...++.+++ +.+..+
T Consensus 10 ~L~~~er~il~l~~~l~~~~----~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~ 66 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR----EH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 66 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hCCHHHHHHHHHHHhcccCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHH
Confidence 489999999988775 3 22 2358999999999999999999999998 555433
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=62.83 E-value=4.6 Score=35.47 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
||+..+.+|. .+.+ .| .-.++|+.+|++...|.++...+|+++++.+-
T Consensus 110 L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 4554 33 34679999999999999999999999986653
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=61.19 E-value=9.4 Score=32.28 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCCCCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhh
Q 003323 580 WRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFI 631 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFi 631 (830)
+++++.++.+.+.....++.. -+ -...+|+++|++...|.+|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 445567988876544445443 12 256889999999999999964
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.92 E-value=2.9 Score=33.48 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHH----HhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHH
Q 003323 585 GLPERSVNILRSWL----FEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEE 644 (830)
Q Consensus 585 ~LPKeqv~ILraWF----~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmiee 644 (830)
.||+..+.+|...| .+ .+ .-.++|+.+|++...|.++...+++++++....+
T Consensus 5 ~L~~~er~il~l~~~l~~~~----g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~ 60 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT----DY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 60 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGG
T ss_pred cCCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998776 23 22 2357999999999999999999999998876543
No 88
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=56.17 E-value=22 Score=31.55 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHHHHhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAK 651 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~qqe~~ 651 (830)
||++.+.++.-.|...-..++ .-.++|..+|+|...|.++...+++++++.+..+.+..-..
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999887752100122 34679999999999999999999999998887666554433
No 89
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.50 E-value=15 Score=28.84 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=42.8
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHH
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMY 646 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~ 646 (830)
...|++....+|..+ .+ .+ .-.++|+.+|++..-|..++...+.+++.....+..
T Consensus 9 ~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~ 63 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAV 63 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred CCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 345999999999774 33 33 335799999999999999999999998877654443
No 90
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.99 E-value=21 Score=30.08 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
.|++..+.+|.-+ .+ .|.. .++|+.+|++..-|.++..+.|++++.....++..
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 82 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 82 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4899999999774 44 2222 47999999999999999999999998876655443
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=53.18 E-value=18 Score=28.36 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFIN 632 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiN 632 (830)
+++++.+.+..+...+.. -++.......+|++.|++...|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888887666555443 2221223678999999999999999653
No 92
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.77 E-value=12 Score=31.35 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
.|++..+++|.-+ .+ -+ .-.++|+.+|++..-|.++..+.|++++.....++..
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 74 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAV 74 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4899999999874 33 23 3468999999999999999999999999887665543
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.32 E-value=12 Score=30.01 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=42.2
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
|++....+|.-+ .+ .+ .-.++|+.+|++...|.++....+.+++.....++..
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~ 69 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVR 69 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 788889999764 33 23 2358999999999999999999999999877665544
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.86 E-value=13 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINAR 634 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaR 634 (830)
.|+.+.+..+...+.+ -+ ...++|+.+|++..-|.+|....+
T Consensus 5 ~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4777766444444444 22 256899999999999999986543
No 95
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=50.79 E-value=8.6 Score=35.12 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
||+..+.+|.-.|.+. ++ -.++|+.+|++...|.++...+|+++++.+
T Consensus 141 L~~~~r~vl~l~~~~g----~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG----LS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999998776652 21 257999999999999999999999998654
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.46 E-value=6.5 Score=36.84 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.||+..+.+|...|.+ .| .-.++|+.+|++...|.++...+|.++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999887765 33 2357999999999999999999999998654
No 97
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=50.24 E-value=13 Score=33.35 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhh
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMV 642 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmi 642 (830)
||+..+.++...|.+. + .-.++|+.+|++..-|.+|...+|.++++.+.
T Consensus 23 L~~~~r~vl~l~y~~g----~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD----Y----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp SCHHHHHHHHHHHHTC----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998877762 2 23689999999999999999999999887654
No 98
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=47.44 E-value=14 Score=32.98 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=41.7
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhH
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmie 643 (830)
||+..+.+|.-.|.+. | .-.++|..+|++..-|.++...+|.++++.+..
T Consensus 26 L~~~~r~vl~l~~~~g----~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED----Y----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp SCHHHHHHHHHHHTSC----C----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998877652 2 236899999999999999999999999876543
No 99
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.25 E-value=40 Score=29.64 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHH
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMY 646 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~ 646 (830)
...|++..+++|.-++ +- + .-.++|+.+|++..-|.++..+.++|+.-....++.
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G----~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv 86 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG----F----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALL 86 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4559999999997654 42 2 227899999999999999999999998776655444
No 100
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.49 E-value=7 Score=35.53 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcch
Q 003323 586 LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 640 (830)
Q Consensus 586 LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKp 640 (830)
||+..+.+|.-.|.+.+ +| .++|+.+|++...|.++...+|+++++.
T Consensus 136 L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 89999999988777643 32 3689999999999999999999998764
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.11 E-value=29 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhH
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVE 643 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmie 643 (830)
.|++..+++|.-. .+ .| .-.++|+.+|++..-|.++..+.|+|++.....
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 4899999999875 43 22 236899999999999999999999999876543
No 102
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.79 E-value=47 Score=32.77 Aligned_cols=55 Identities=24% Similarity=0.096 Sum_probs=44.8
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 584 RGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 584 R~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
..||++.+++|.-. .+ -+ .-.++|+.+|++..-|.+...++|+++++....++..
T Consensus 196 ~~L~~~erevl~L~-~~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~ 250 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 250 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 35999999999886 34 22 3367999999999999999999999999987765544
No 103
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.85 E-value=25 Score=25.34 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINA 633 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNa 633 (830)
.|+.+....+...+.+ .+ ...++|+.+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4655554444444444 22 34689999999999999998654
No 104
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.45 E-value=66 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 003323 590 SVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINA 633 (830)
Q Consensus 590 qv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNa 633 (830)
.++.+..|+.+|+..|-++. ..||+.+|++...+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 46677889999988755554 468999999999999988765
No 105
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=28.14 E-value=12 Score=34.80 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW 638 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK 638 (830)
.||+..+.+|.-.|.+. -.-.++|+.+|++...|.+++..+|+++|
T Consensus 198 ~L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 38999999998766652 23458999999999999999999998875
No 106
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=27.97 E-value=55 Score=31.74 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=42.0
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHH
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEM 645 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem 645 (830)
...|+++.+++|+ |+.+ .+ .-.++|+.+|++..-|.+...|.|+|+.-....+.
T Consensus 173 ~~~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~ 226 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WASK----GK----TASVTANLTGINARTVQHYLDKARAKLDAESVPQL 226 (236)
T ss_dssp GGSCCHHHHHHHH-HHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred cCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHH
Confidence 3459999999994 5554 22 23678999999999999999999999876665444
No 107
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.75 E-value=50 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINARV 635 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaRr 635 (830)
..+||+.+|++...|++|..+.+.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999988763
No 108
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=27.70 E-value=45 Score=36.78 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-chhhHH
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLW-KPMVEE 644 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlK-Kpmiee 644 (830)
.|+++.+.||...|.-.-..++ .-.++|..+|+|...|..+...+++|+| +++..+
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~~~ 431 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 431 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhhHH
Confidence 3899999999877651000133 4578999999999999999999999999 565433
No 109
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=27.48 E-value=63 Score=29.68 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCCCCCChhHHHHHHHHH-HhhcCCCCCCHHHHHHHHH-Hh--CCChhhHhhhhhhh
Q 003323 580 WRPQRGLPERSVNILRSWL-FEHFLHPYPSDADKHLLAR-QT--GLSRNQVSNWFINA 633 (830)
Q Consensus 580 ~RKRR~LPKeqv~ILraWF-~eHl~nPYPS~eEK~~LA~-qT--GLS~kQVsNWFiNa 633 (830)
+++|+.|+-+++..|..|+ .+ ||-.+..+....|+ +. +++...|+.|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5677789999999999998 45 67555444333221 67 78889999998663
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.58 E-value=56 Score=24.91 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHhCCChhhHhhhhhhhhhhhcchhhHHHHH
Q 003323 613 HLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQ 647 (830)
Q Consensus 613 ~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem~q 647 (830)
.++|+..|++..-|.++..+.+.+++.....++..
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~ 51 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHKVTELLN 51 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 58999999999999999999999998877655543
No 111
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.35 E-value=2.8e+02 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003323 461 IEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVTS 494 (830)
Q Consensus 461 ~E~q~kKaKLL~mLdEVDrRYeqY~eQmq~VvsS 494 (830)
.+.+..+++|...++||..+-++|.++++.++..
T Consensus 95 ~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~ 128 (165)
T 1gs9_A 95 KELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ 128 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667789999999999999999999999876643
No 112
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.21 E-value=81 Score=26.51 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhh
Q 003323 584 RGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARV 635 (830)
Q Consensus 584 R~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRr 635 (830)
+.|+.+.+...-.++.+. .-+ ....+|+.+|++...|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 468887765444444321 011 3578999999999999999865554
No 113
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.67 E-value=52 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=16.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINAR 634 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaR 634 (830)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34677777777777777777655
No 114
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=23.06 E-value=16 Score=33.29 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchh
Q 003323 585 GLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPM 641 (830)
Q Consensus 585 ~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpm 641 (830)
.||++.+.+|.-.+.+ -+ .-.++|+.+|++...|.++...+|+++++.+
T Consensus 93 ~Lp~~~r~vl~L~~~~----g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLLTAME----GF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTTTSSS----CC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999998765444 22 2367999999999999999999999987654
No 115
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.44 E-value=45 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINAR 634 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaR 634 (830)
...||+.+|++...|++|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.26 E-value=46 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINAR 634 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaR 634 (830)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 117
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=21.18 E-value=48 Score=26.73 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINAR 634 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaR 634 (830)
...||+.+|++...|++|..+.|
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998866
No 118
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.92 E-value=62 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=12.7
Q ss_pred HHHHHHhCCChhhHhhhhhh
Q 003323 613 HLLARQTGLSRNQVSNWFIN 632 (830)
Q Consensus 613 ~~LA~qTGLS~kQVsNWFiN 632 (830)
.+||+.+|++...|++|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 35666666666666666655
No 119
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.74 E-value=46 Score=25.47 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhhh
Q 003323 612 KHLLARQTGLSRNQVSNWFINARVR 636 (830)
Q Consensus 612 K~~LA~qTGLS~kQVsNWFiNaRrR 636 (830)
..+||+.+|++...|++|..+.+..
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~~ 43 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTKR 43 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 4679999999999999999987663
No 120
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.51 E-value=1.9e+02 Score=24.53 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHhCCChhhHhhhhhh
Q 003323 583 QRGLPERSVNILRSWLFEHFLHPYPSD-ADKHLLARQTGLSRNQVSNWFIN 632 (830)
Q Consensus 583 RR~LPKeqv~ILraWF~eHl~nPYPS~-eEK~~LA~qTGLS~kQVsNWFiN 632 (830)
++.|+.+.+...-..+.++- .-|++. .....+|+..|++...|.+|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 34688887754444443310 012232 35678999999999999999643
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.38 E-value=1.1e+02 Score=26.18 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=41.7
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhcchhhHHH
Q 003323 584 RGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEM 645 (830)
Q Consensus 584 R~LPKeqv~ILraWF~eHl~nPYPS~eEK~~LA~qTGLS~kQVsNWFiNaRrRlKKpmieem 645 (830)
..|++..+++|+-.+ + .| .-.++|+.+|++..-|.+...+.++|+.-....++
T Consensus 28 ~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~l 80 (90)
T 3ulq_B 28 DVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEA 80 (90)
T ss_dssp -CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred cCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 359999999997655 4 22 34689999999999999999999999876655444
Done!