Query 003325
Match_columns 829
No_of_seqs 493 out of 4206
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 21:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.3E-72 1.2E-76 685.1 41.3 658 4-730 13-718 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-69 3.1E-74 627.2 39.6 717 17-781 10-787 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-40 5.4E-45 348.8 17.8 273 188-461 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.4E-19 2.9E-24 223.5 14.6 230 563-798 91-342 (968)
5 PLN00113 leucine-rich repeat r 99.8 5.2E-19 1.1E-23 218.3 14.8 132 667-798 283-414 (968)
6 KOG0444 Cytoskeletal regulator 99.8 3.9E-20 8.5E-25 194.4 -1.9 245 571-824 107-375 (1255)
7 PLN03210 Resistant to P. syrin 99.7 3.3E-17 7.2E-22 202.2 17.7 105 693-798 779-903 (1153)
8 KOG0444 Cytoskeletal regulator 99.7 2.2E-18 4.8E-23 181.3 -4.7 220 570-801 153-375 (1255)
9 KOG4194 Membrane glycoprotein 99.7 2.7E-17 5.9E-22 172.3 2.3 247 543-799 174-427 (873)
10 KOG4194 Membrane glycoprotein 99.6 5.5E-16 1.2E-20 162.7 5.3 253 538-801 74-354 (873)
11 KOG0472 Leucine-rich repeat pr 99.5 4E-17 8.6E-22 163.9 -8.4 217 574-801 75-310 (565)
12 KOG0617 Ras suppressor protein 99.5 1.9E-16 4.2E-21 140.8 -4.6 164 615-787 31-195 (264)
13 KOG0472 Leucine-rich repeat pr 99.5 5E-16 1.1E-20 156.2 -6.7 198 571-784 118-316 (565)
14 PRK04841 transcriptional regul 99.5 3.6E-12 7.9E-17 156.8 24.9 284 193-514 20-336 (903)
15 KOG0617 Ras suppressor protein 99.5 1.4E-15 3E-20 135.3 -4.6 166 586-763 29-195 (264)
16 PRK15370 E3 ubiquitin-protein 99.3 2.8E-12 6E-17 148.3 9.4 224 543-800 200-427 (754)
17 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 8.8E-17 146.9 10.4 202 566-801 200-401 (754)
18 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.4E-16 141.1 12.9 222 545-801 204-458 (788)
19 KOG0618 Serine/threonine phosp 99.3 1.9E-13 4.2E-18 151.7 -3.3 213 579-800 253-488 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.2 4.6E-13 9.9E-18 143.7 -2.6 239 564-802 22-292 (319)
21 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-12 2.9E-17 140.1 0.8 239 581-820 14-287 (319)
22 PRK00411 cdc6 cell division co 99.2 3.2E-09 7E-14 117.1 26.2 286 181-480 28-359 (394)
23 PRK15387 E3 ubiquitin-protein 99.2 4.3E-11 9.3E-16 137.6 10.9 147 617-784 302-465 (788)
24 KOG0618 Serine/threonine phosp 99.2 1.1E-12 2.4E-17 145.7 -2.5 218 590-822 241-487 (1081)
25 TIGR02928 orc1/cdc6 family rep 99.1 1.5E-08 3.4E-13 110.6 25.0 285 182-480 14-351 (365)
26 COG2909 MalT ATP-dependent tra 99.1 5.7E-09 1.2E-13 116.6 21.0 284 192-513 24-341 (894)
27 KOG4237 Extracellular matrix p 99.1 7E-12 1.5E-16 126.6 -3.0 217 573-798 73-356 (498)
28 TIGR00635 ruvB Holliday juncti 99.1 3.7E-09 8.1E-14 112.2 17.1 270 183-478 4-288 (305)
29 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.5E-16 123.9 -0.6 211 562-778 118-340 (505)
30 PRK00080 ruvB Holliday junctio 99.0 1.2E-08 2.6E-13 109.0 19.1 251 182-479 24-310 (328)
31 PF05729 NACHT: NACHT domain 99.0 1.1E-09 2.4E-14 105.0 10.2 136 206-347 1-163 (166)
32 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.5E-16 123.9 -1.9 206 586-798 117-336 (505)
33 PF01637 Arch_ATPase: Archaeal 99.0 3.3E-09 7.2E-14 108.0 11.6 188 185-378 1-233 (234)
34 TIGR03015 pepcterm_ATPase puta 98.9 9.9E-08 2.1E-12 99.4 20.7 175 203-383 41-242 (269)
35 PF05659 RPW8: Arabidopsis bro 98.9 2.8E-08 6E-13 90.3 13.6 133 3-135 6-138 (147)
36 KOG0532 Leucine-rich repeat (L 98.9 8.7E-11 1.9E-15 124.2 -3.1 160 613-784 94-253 (722)
37 KOG0532 Leucine-rich repeat (L 98.9 5.9E-11 1.3E-15 125.4 -4.5 190 571-775 79-271 (722)
38 COG2256 MGS1 ATPase related to 98.8 3.6E-07 7.9E-12 94.0 19.0 203 200-428 43-268 (436)
39 COG3903 Predicted ATPase [Gene 98.8 5.7E-08 1.2E-12 100.7 11.6 290 203-512 12-316 (414)
40 KOG1259 Nischarin, modulator o 98.7 2.4E-09 5.2E-14 104.5 1.3 186 580-781 204-415 (490)
41 KOG4658 Apoptotic ATPase [Sign 98.7 8E-09 1.7E-13 121.8 2.9 223 588-822 543-781 (889)
42 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3.1E-13 112.2 4.4 185 583-781 109-294 (394)
43 PRK13342 recombination factor 98.7 1.8E-06 4E-11 95.1 20.8 170 184-380 13-197 (413)
44 COG4886 Leucine-rich repeat (L 98.7 2.4E-08 5.3E-13 110.3 5.8 174 614-798 113-287 (394)
45 KOG4237 Extracellular matrix p 98.6 4.3E-09 9.4E-14 106.8 -0.2 212 579-801 58-335 (498)
46 PTZ00112 origin recognition co 98.6 4.3E-06 9.3E-11 94.8 21.9 203 181-383 753-986 (1164)
47 KOG1909 Ran GTPase-activating 98.6 4.1E-09 8.8E-14 105.7 -1.6 193 584-776 86-310 (382)
48 PRK06893 DNA replication initi 98.6 8.6E-07 1.9E-11 89.2 15.0 144 204-379 38-203 (229)
49 PF14580 LRR_9: Leucine-rich r 98.6 3.8E-08 8.3E-13 92.8 4.2 121 668-795 19-147 (175)
50 PF05496 RuvB_N: Holliday junc 98.6 1.2E-06 2.6E-11 84.4 14.1 169 182-383 23-225 (233)
51 PLN03150 hypothetical protein; 98.6 9.2E-08 2E-12 110.7 7.6 113 669-781 419-532 (623)
52 COG3899 Predicted ATPase [Gene 98.6 2.1E-06 4.5E-11 102.1 19.0 307 185-510 2-386 (849)
53 KOG2120 SCF ubiquitin ligase, 98.5 2.9E-09 6.2E-14 104.0 -5.7 178 591-774 186-373 (419)
54 PRK07003 DNA polymerase III su 98.5 2.2E-05 4.8E-10 88.8 22.9 176 182-379 15-221 (830)
55 PF14580 LRR_9: Leucine-rich r 98.5 7.4E-08 1.6E-12 90.9 2.7 128 682-816 10-145 (175)
56 PLN03150 hypothetical protein; 98.4 2.7E-07 5.8E-12 106.9 7.3 108 693-800 419-527 (623)
57 PRK15386 type III secretion pr 98.4 2.7E-07 5.9E-12 97.5 6.3 84 637-736 49-134 (426)
58 PRK13341 recombination factor 98.4 3.3E-05 7.2E-10 89.6 23.0 166 184-374 29-212 (725)
59 PF13173 AAA_14: AAA domain 98.4 8.8E-07 1.9E-11 80.3 7.9 113 205-339 2-127 (128)
60 PRK14963 DNA polymerase III su 98.4 6.2E-05 1.3E-09 84.1 23.8 185 183-376 14-214 (504)
61 KOG2028 ATPase related to the 98.4 7.9E-06 1.7E-10 82.6 14.5 158 196-374 153-331 (554)
62 KOG1259 Nischarin, modulator o 98.4 2E-07 4.3E-12 91.3 2.7 210 586-802 178-413 (490)
63 PRK04195 replication factor C 98.4 5.3E-05 1.1E-09 85.3 22.6 171 183-378 14-201 (482)
64 PRK12323 DNA polymerase III su 98.4 9.5E-06 2.1E-10 90.5 16.0 176 182-379 15-225 (700)
65 PRK14961 DNA polymerase III su 98.4 1.9E-05 4.2E-10 85.3 18.3 174 183-377 16-218 (363)
66 cd01128 rho_factor Transcripti 98.3 3.8E-07 8.2E-12 91.8 4.7 103 194-298 5-115 (249)
67 COG2255 RuvB Holliday junction 98.3 6E-06 1.3E-10 81.1 12.6 254 183-482 26-314 (332)
68 cd00009 AAA The AAA+ (ATPases 98.3 4.1E-06 8.9E-11 78.1 11.0 118 187-321 2-131 (151)
69 PRK14949 DNA polymerase III su 98.3 1.5E-05 3.2E-10 92.0 17.2 176 183-379 16-220 (944)
70 PRK08691 DNA polymerase III su 98.3 0.00012 2.6E-09 83.0 23.9 174 182-377 15-218 (709)
71 PRK12402 replication factor C 98.3 2.2E-05 4.7E-10 84.8 17.8 189 183-377 15-224 (337)
72 PRK14960 DNA polymerase III su 98.3 1.9E-05 4.2E-10 88.3 17.3 174 182-377 14-217 (702)
73 PRK15386 type III secretion pr 98.3 1.1E-06 2.4E-11 93.0 7.3 135 615-775 50-188 (426)
74 KOG1909 Ran GTPase-activating 98.3 1.2E-07 2.6E-12 95.3 -0.2 190 563-752 90-310 (382)
75 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 3.1E-11 79.5 6.7 115 204-319 3-125 (131)
76 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.3E-13 99.1 -6.7 181 566-751 186-374 (419)
77 COG1474 CDC6 Cdc6-related prot 98.3 0.0005 1.1E-08 73.6 26.5 280 183-481 17-336 (366)
78 PLN03025 replication factor C 98.3 2.9E-05 6.2E-10 82.6 17.2 171 184-374 14-195 (319)
79 PRK08084 DNA replication initi 98.3 2.5E-05 5.4E-10 78.9 15.5 145 203-379 43-209 (235)
80 PRK08727 hypothetical protein; 98.3 2.6E-05 5.7E-10 78.6 15.6 141 204-376 40-201 (233)
81 PRK06645 DNA polymerase III su 98.2 4.8E-05 1E-09 84.6 18.4 173 183-376 21-226 (507)
82 PRK05564 DNA polymerase III su 98.2 4.8E-05 1E-09 80.8 17.6 169 184-378 5-189 (313)
83 PRK09376 rho transcription ter 98.2 1.2E-06 2.7E-11 91.6 4.7 101 194-298 158-268 (416)
84 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.8E-05 3.8E-10 80.0 13.0 159 190-381 24-203 (226)
85 PRK00440 rfc replication facto 98.2 0.00022 4.8E-09 76.3 22.2 172 184-376 18-200 (319)
86 PRK14956 DNA polymerase III su 98.2 4.5E-05 9.7E-10 83.1 16.1 185 183-375 18-218 (484)
87 PRK14957 DNA polymerase III su 98.2 5.7E-05 1.2E-09 84.5 17.2 176 183-380 16-222 (546)
88 PTZ00202 tuzin; Provisional 98.2 0.00026 5.7E-09 74.8 20.8 159 180-347 259-434 (550)
89 PRK14962 DNA polymerase III su 98.1 7.9E-05 1.7E-09 82.6 17.8 179 183-382 14-222 (472)
90 PRK07994 DNA polymerase III su 98.1 6.9E-05 1.5E-09 85.2 17.4 177 182-379 15-220 (647)
91 TIGR00678 holB DNA polymerase 98.1 7.8E-05 1.7E-09 72.8 15.6 154 194-375 3-187 (188)
92 PRK14958 DNA polymerase III su 98.1 6.7E-05 1.5E-09 84.1 16.8 174 182-377 15-218 (509)
93 PRK14964 DNA polymerase III su 98.1 8.8E-05 1.9E-09 81.8 17.1 173 183-376 13-214 (491)
94 PRK05642 DNA replication initi 98.1 5.9E-05 1.3E-09 76.1 14.2 143 205-379 45-208 (234)
95 PRK09087 hypothetical protein; 98.1 3.4E-05 7.4E-10 77.1 12.2 133 205-378 44-194 (226)
96 PRK07940 DNA polymerase III su 98.1 0.00011 2.3E-09 79.5 16.8 169 184-379 6-213 (394)
97 PRK14951 DNA polymerase III su 98.1 9.3E-05 2E-09 84.0 16.8 174 183-378 16-224 (618)
98 PRK09112 DNA polymerase III su 98.1 0.00013 2.8E-09 77.8 16.9 187 182-379 22-240 (351)
99 KOG4341 F-box protein containi 98.1 1.5E-07 3.3E-12 96.7 -5.2 254 562-817 161-458 (483)
100 PF00308 Bac_DnaA: Bacterial d 98.0 0.00019 4.1E-09 71.5 15.9 152 204-377 33-206 (219)
101 PRK05896 DNA polymerase III su 98.0 0.00019 4.1E-09 80.5 17.5 179 182-381 15-223 (605)
102 PRK07471 DNA polymerase III su 98.0 0.00034 7.5E-09 75.0 18.7 187 182-379 18-238 (365)
103 PF13191 AAA_16: AAA ATPase do 98.0 6.9E-06 1.5E-10 80.1 5.5 44 185-228 2-47 (185)
104 PRK14969 DNA polymerase III su 98.0 0.00021 4.5E-09 80.8 17.0 172 183-376 16-217 (527)
105 PF13855 LRR_8: Leucine rich r 98.0 7.8E-06 1.7E-10 63.0 3.9 57 669-726 2-59 (61)
106 TIGR01242 26Sp45 26S proteasom 98.0 9.2E-05 2E-09 80.4 13.5 165 182-373 121-328 (364)
107 PRK14970 DNA polymerase III su 98.0 0.00041 8.8E-09 75.6 18.6 173 183-376 17-206 (367)
108 PRK08451 DNA polymerase III su 97.9 0.00049 1.1E-08 76.7 18.7 175 183-379 14-218 (535)
109 PHA02544 44 clamp loader, smal 97.9 0.00019 4.1E-09 76.6 15.0 139 183-345 21-171 (316)
110 PF13855 LRR_8: Leucine rich r 97.9 9.9E-06 2.1E-10 62.5 3.7 57 693-750 2-59 (61)
111 PRK14959 DNA polymerase III su 97.9 0.00034 7.4E-09 78.9 17.0 180 183-383 16-225 (624)
112 TIGR00767 rho transcription te 97.9 1.6E-05 3.5E-10 83.9 6.0 100 197-298 160-267 (415)
113 TIGR02397 dnaX_nterm DNA polym 97.9 0.00056 1.2E-08 74.4 18.4 174 183-379 14-218 (355)
114 PRK09111 DNA polymerase III su 97.9 0.00055 1.2E-08 78.0 18.5 176 182-378 23-232 (598)
115 PRK14955 DNA polymerase III su 97.9 0.00035 7.5E-09 76.6 16.3 191 183-377 16-226 (397)
116 PRK14952 DNA polymerase III su 97.9 0.00049 1.1E-08 77.9 17.8 179 183-382 13-223 (584)
117 PRK08903 DnaA regulatory inact 97.9 0.0003 6.4E-09 71.0 14.4 145 203-383 40-203 (227)
118 PRK07764 DNA polymerase III su 97.8 0.00048 1E-08 81.3 17.7 173 183-376 15-218 (824)
119 PRK07133 DNA polymerase III su 97.8 0.00072 1.6E-08 77.6 18.2 175 183-379 18-220 (725)
120 TIGR02903 spore_lon_C ATP-depe 97.8 0.00024 5.1E-09 81.9 14.6 195 183-381 154-397 (615)
121 PRK14950 DNA polymerase III su 97.8 0.00093 2E-08 76.9 19.1 186 183-378 16-220 (585)
122 PRK14088 dnaA chromosomal repl 97.8 0.00041 8.8E-09 76.8 15.3 152 205-376 130-302 (440)
123 KOG0531 Protein phosphatase 1, 97.8 4E-06 8.6E-11 92.9 -0.5 172 586-775 91-266 (414)
124 PRK14087 dnaA chromosomal repl 97.8 0.0005 1.1E-08 76.1 15.9 159 205-381 141-321 (450)
125 TIGR02639 ClpA ATP-dependent C 97.8 0.00022 4.8E-09 84.5 13.5 148 184-347 183-358 (731)
126 PF05621 TniB: Bacterial TniB 97.7 0.001 2.2E-08 67.7 15.7 184 192-377 46-259 (302)
127 PRK03992 proteasome-activating 97.7 0.00028 6.1E-09 76.9 12.6 164 182-372 130-336 (389)
128 PRK06620 hypothetical protein; 97.7 0.0003 6.4E-09 69.7 11.5 128 206-376 45-186 (214)
129 KOG0989 Replication factor C, 97.7 0.00029 6.3E-09 70.4 11.1 175 183-373 36-224 (346)
130 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00031 6.8E-09 83.8 13.1 171 183-371 187-388 (852)
131 PRK14971 DNA polymerase III su 97.7 0.0019 4.1E-08 74.3 18.8 171 183-376 17-219 (614)
132 PRK14953 DNA polymerase III su 97.7 0.0022 4.8E-08 71.6 18.7 176 183-379 16-220 (486)
133 PRK06305 DNA polymerase III su 97.7 0.0016 3.5E-08 72.2 17.3 174 183-379 17-223 (451)
134 PRK14954 DNA polymerase III su 97.7 0.0021 4.5E-08 73.5 18.5 193 182-378 15-228 (620)
135 PRK14948 DNA polymerase III su 97.7 0.0017 3.7E-08 74.6 18.0 188 183-379 16-222 (620)
136 KOG2004 Mitochondrial ATP-depe 97.6 0.0043 9.3E-08 69.0 19.7 152 182-347 410-596 (906)
137 PF14516 AAA_35: AAA-like doma 97.6 0.015 3.2E-07 62.0 23.5 195 180-386 8-246 (331)
138 COG0466 Lon ATP-dependent Lon 97.6 0.004 8.7E-08 69.6 19.0 153 182-348 322-509 (782)
139 PRK06647 DNA polymerase III su 97.6 0.0024 5.2E-08 72.5 18.0 174 183-377 16-218 (563)
140 PRK05563 DNA polymerase III su 97.6 0.0032 6.9E-08 71.8 19.0 174 182-376 15-217 (559)
141 KOG1859 Leucine-rich repeat pr 97.6 2E-06 4.3E-11 94.3 -7.1 39 565-603 84-122 (1096)
142 TIGR02881 spore_V_K stage V sp 97.5 0.0009 2E-08 69.0 12.5 127 204-348 41-192 (261)
143 KOG2543 Origin recognition com 97.5 0.00032 6.9E-09 72.1 8.5 159 182-346 5-192 (438)
144 TIGR00763 lon ATP-dependent pr 97.5 0.006 1.3E-07 72.9 20.6 45 183-227 320-369 (775)
145 PRK14965 DNA polymerase III su 97.5 0.0026 5.7E-08 72.9 16.9 176 183-379 16-221 (576)
146 TIGR03689 pup_AAA proteasome A 97.5 0.0022 4.8E-08 71.2 15.0 145 183-347 182-378 (512)
147 TIGR00362 DnaA chromosomal rep 97.5 0.0015 3.3E-08 72.1 13.9 151 205-377 136-308 (405)
148 PRK07399 DNA polymerase III su 97.5 0.012 2.6E-07 62.0 19.8 189 184-379 5-221 (314)
149 PRK00149 dnaA chromosomal repl 97.5 0.0013 2.8E-08 73.6 13.4 151 204-376 147-319 (450)
150 KOG3665 ZYG-1-like serine/thre 97.4 8.7E-05 1.9E-09 85.9 3.7 61 713-775 170-231 (699)
151 COG3267 ExeA Type II secretory 97.4 0.0079 1.7E-07 59.1 16.3 174 203-381 49-247 (269)
152 PRK05707 DNA polymerase III su 97.4 0.0076 1.6E-07 63.8 17.7 151 203-379 20-203 (328)
153 CHL00095 clpC Clp protease ATP 97.4 0.00078 1.7E-08 80.9 11.6 148 183-346 179-353 (821)
154 PRK14086 dnaA chromosomal repl 97.4 0.0091 2E-07 67.4 19.0 150 205-376 314-485 (617)
155 PRK10865 protein disaggregatio 97.4 0.00079 1.7E-08 80.7 11.4 147 183-347 178-354 (857)
156 PF05673 DUF815: Protein of un 97.4 0.0066 1.4E-07 59.8 15.7 47 182-228 26-75 (249)
157 KOG0531 Protein phosphatase 1, 97.4 2.9E-05 6.4E-10 86.0 -0.9 216 564-798 94-315 (414)
158 KOG3665 ZYG-1-like serine/thre 97.4 3.4E-05 7.3E-10 89.2 -0.4 128 617-749 122-259 (699)
159 PRK11331 5-methylcytosine-spec 97.4 0.00041 8.8E-09 74.8 7.7 105 185-298 177-284 (459)
160 PRK12422 chromosomal replicati 97.4 0.0029 6.3E-08 69.9 14.6 145 205-372 141-306 (445)
161 CHL00181 cbbX CbbX; Provisiona 97.4 0.0054 1.2E-07 63.7 15.8 126 206-349 60-211 (287)
162 COG1222 RPT1 ATP-dependent 26S 97.4 0.0048 1E-07 63.3 14.3 175 183-384 151-372 (406)
163 smart00382 AAA ATPases associa 97.3 0.00082 1.8E-08 61.9 8.2 39 206-247 3-41 (148)
164 TIGR02880 cbbX_cfxQ probable R 97.3 0.0057 1.2E-07 63.6 15.1 123 207-347 60-208 (284)
165 PTZ00454 26S protease regulato 97.3 0.0031 6.8E-08 68.5 13.2 163 183-372 145-350 (398)
166 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3E-08 76.8 11.2 148 183-347 186-362 (758)
167 KOG4341 F-box protein containi 97.3 1.3E-05 2.9E-10 82.7 -5.0 227 591-821 139-382 (483)
168 PRK12608 transcription termina 97.3 0.0011 2.4E-08 69.8 9.1 103 193-297 121-231 (380)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0014 3.1E-08 78.9 11.3 147 183-347 173-349 (852)
170 COG1373 Predicted ATPase (AAA+ 97.2 0.0041 8.8E-08 67.9 13.6 229 193-478 27-269 (398)
171 PRK08116 hypothetical protein; 97.2 0.0018 3.9E-08 66.6 10.2 98 206-320 115-221 (268)
172 PRK10787 DNA-binding ATP-depen 97.2 0.043 9.3E-07 65.1 22.7 153 181-347 320-506 (784)
173 PTZ00361 26 proteosome regulat 97.2 0.0024 5.1E-08 69.9 11.5 144 183-349 183-369 (438)
174 PRK08769 DNA polymerase III su 97.2 0.016 3.5E-07 60.7 17.2 87 284-379 111-208 (319)
175 KOG4579 Leucine-rich repeat (L 97.2 3.8E-05 8.2E-10 67.0 -2.2 110 669-783 28-141 (177)
176 KOG4579 Leucine-rich repeat (L 97.2 2.2E-05 4.9E-10 68.4 -3.9 80 716-798 53-133 (177)
177 PF12799 LRR_4: Leucine Rich r 97.1 0.00026 5.7E-09 49.9 2.1 37 617-653 1-37 (44)
178 PF07728 AAA_5: AAA domain (dy 97.1 0.00044 9.5E-09 63.7 4.3 85 208-307 2-88 (139)
179 PF12799 LRR_4: Leucine Rich r 97.1 0.0004 8.7E-09 49.0 3.0 34 741-775 2-35 (44)
180 KOG2227 Pre-initiation complex 97.1 0.012 2.6E-07 62.5 15.1 167 180-349 147-340 (529)
181 PF00004 AAA: ATPase family as 97.1 0.0018 3.9E-08 58.9 7.9 21 208-228 1-21 (132)
182 COG0593 DnaA ATPase involved i 97.1 0.012 2.7E-07 62.9 15.0 127 204-349 112-259 (408)
183 PF13177 DNA_pol3_delta2: DNA 97.1 0.011 2.4E-07 55.7 13.3 128 189-335 3-162 (162)
184 PRK08058 DNA polymerase III su 97.1 0.018 3.9E-07 61.3 16.3 142 186-346 8-181 (329)
185 KOG1859 Leucine-rich repeat pr 97.0 2.5E-05 5.5E-10 85.9 -5.7 181 613-802 105-293 (1096)
186 CHL00176 ftsH cell division pr 97.0 0.0054 1.2E-07 70.6 12.3 162 183-371 183-386 (638)
187 PF10443 RNA12: RNA12 protein; 97.0 0.035 7.7E-07 59.3 17.2 191 188-386 1-285 (431)
188 TIGR02640 gas_vesic_GvpN gas v 97.0 0.014 3.1E-07 60.0 14.0 42 206-253 22-63 (262)
189 PRK08118 topology modulation p 97.0 0.00047 1E-08 65.5 2.7 35 206-241 2-37 (167)
190 COG5238 RNA1 Ran GTPase-activa 97.0 0.00019 4.1E-09 70.1 -0.0 88 688-775 210-314 (388)
191 KOG1514 Origin recognition com 96.9 0.018 3.8E-07 64.4 14.4 134 181-317 394-546 (767)
192 TIGR01241 FtsH_fam ATP-depende 96.9 0.0054 1.2E-07 69.5 11.0 170 183-379 55-267 (495)
193 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0015 3.2E-08 66.2 5.5 62 196-259 60-122 (274)
194 PRK06921 hypothetical protein; 96.9 0.0029 6.3E-08 64.9 7.8 39 204-244 116-154 (266)
195 PRK06871 DNA polymerase III su 96.9 0.049 1.1E-06 57.3 16.9 166 193-376 12-200 (325)
196 PRK12377 putative replication 96.8 0.002 4.4E-08 64.9 6.3 74 204-296 100-173 (248)
197 PRK06090 DNA polymerase III su 96.8 0.11 2.3E-06 54.6 19.1 156 193-379 13-201 (319)
198 PLN00020 ribulose bisphosphate 96.8 0.035 7.6E-07 58.2 14.5 26 203-228 146-171 (413)
199 TIGR00602 rad24 checkpoint pro 96.7 0.01 2.2E-07 67.9 11.6 45 183-227 84-132 (637)
200 COG5238 RNA1 Ran GTPase-activa 96.7 0.00029 6.3E-09 68.8 -0.7 40 613-652 88-132 (388)
201 PF04665 Pox_A32: Poxvirus A32 96.7 0.0028 6E-08 63.0 6.1 37 205-244 13-49 (241)
202 PRK06526 transposase; Provisio 96.7 0.0071 1.5E-07 61.5 9.2 98 204-321 97-202 (254)
203 KOG2982 Uncharacterized conser 96.7 0.00057 1.2E-08 67.7 1.0 202 588-795 69-286 (418)
204 PRK04132 replication factor C 96.7 0.04 8.7E-07 65.0 16.1 146 212-377 571-729 (846)
205 TIGR02639 ClpA ATP-dependent C 96.7 0.024 5.2E-07 67.5 14.7 46 182-227 453-506 (731)
206 KOG2982 Uncharacterized conser 96.7 0.00021 4.6E-09 70.7 -2.1 180 615-799 69-260 (418)
207 cd01120 RecA-like_NTPases RecA 96.7 0.0049 1.1E-07 58.3 7.4 40 207-249 1-40 (165)
208 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0044 9.6E-08 62.9 7.4 61 195-255 8-72 (235)
209 PRK09183 transposase/IS protei 96.7 0.0055 1.2E-07 62.7 8.0 24 204-227 101-124 (259)
210 PRK07993 DNA polymerase III su 96.7 0.091 2E-06 55.9 17.3 168 193-377 12-202 (334)
211 PRK10536 hypothetical protein; 96.6 0.01 2.2E-07 59.3 9.4 135 183-322 55-215 (262)
212 KOG0730 AAA+-type ATPase [Post 96.6 0.067 1.4E-06 59.6 16.3 120 203-351 466-619 (693)
213 PRK07261 topology modulation p 96.6 0.004 8.6E-08 59.4 6.2 22 207-228 2-23 (171)
214 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.4E-08 58.4 3.1 21 207-227 1-21 (121)
215 PRK08181 transposase; Validate 96.6 0.0065 1.4E-07 62.1 7.9 98 204-321 105-210 (269)
216 PRK10865 protein disaggregatio 96.6 0.54 1.2E-05 56.9 25.3 46 182-227 567-620 (857)
217 PF00448 SRP54: SRP54-type pro 96.6 0.0084 1.8E-07 58.4 8.2 40 205-247 1-40 (196)
218 PRK09361 radB DNA repair and r 96.6 0.0059 1.3E-07 61.5 7.4 57 193-253 10-67 (225)
219 PF02562 PhoH: PhoH-like prote 96.6 0.0076 1.6E-07 58.5 7.7 124 188-321 5-157 (205)
220 KOG0991 Replication factor C, 96.5 0.0056 1.2E-07 58.7 6.4 97 184-298 28-125 (333)
221 CHL00195 ycf46 Ycf46; Provisio 96.5 0.088 1.9E-06 58.8 16.9 144 204-372 258-428 (489)
222 KOG1969 DNA replication checkp 96.5 0.006 1.3E-07 68.1 7.5 75 203-297 324-398 (877)
223 KOG2739 Leucine-rich acidic nu 96.5 0.0013 2.9E-08 64.5 2.2 82 667-751 42-127 (260)
224 KOG0741 AAA+-type ATPase [Post 96.5 0.039 8.5E-07 59.5 12.8 141 203-369 536-704 (744)
225 PF01695 IstB_IS21: IstB-like 96.4 0.006 1.3E-07 58.5 6.2 98 204-321 46-151 (178)
226 TIGR02237 recomb_radB DNA repa 96.4 0.0056 1.2E-07 60.8 6.3 50 203-256 10-59 (209)
227 TIGR01243 CDC48 AAA family ATP 96.4 0.037 8E-07 66.1 13.9 45 183-227 178-234 (733)
228 KOG1644 U2-associated snRNP A' 96.4 0.0053 1.2E-07 57.8 5.2 34 618-652 43-76 (233)
229 TIGR02902 spore_lonB ATP-depen 96.4 0.041 8.8E-07 62.6 13.5 44 183-227 65-108 (531)
230 cd01393 recA_like RecA is a b 96.4 0.017 3.6E-07 58.2 9.3 61 193-255 6-72 (226)
231 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0037 8.1E-08 65.7 4.6 45 184-228 52-101 (361)
232 COG0542 clpA ATP-binding subun 96.4 0.17 3.6E-06 58.8 18.0 44 184-227 492-543 (786)
233 TIGR01243 CDC48 AAA family ATP 96.3 0.046 1E-06 65.3 14.3 163 184-373 454-657 (733)
234 KOG2739 Leucine-rich acidic nu 96.3 0.0014 3E-08 64.4 1.1 62 586-652 39-103 (260)
235 PRK06835 DNA replication prote 96.3 0.01 2.2E-07 62.7 7.7 37 205-244 183-219 (329)
236 PLN03194 putative disease resi 96.3 0.00014 3E-09 67.8 -5.5 78 67-161 76-154 (187)
237 KOG0733 Nuclear AAA ATPase (VC 96.3 0.082 1.8E-06 58.2 14.0 46 183-228 190-246 (802)
238 PRK11034 clpA ATP-dependent Cl 96.3 0.063 1.4E-06 63.3 14.3 45 183-227 458-510 (758)
239 PRK06964 DNA polymerase III su 96.2 0.27 5.8E-06 52.2 17.5 84 285-379 131-225 (342)
240 KOG2228 Origin recognition com 96.1 0.056 1.2E-06 55.2 11.3 160 184-347 25-219 (408)
241 COG2812 DnaX DNA polymerase II 96.1 0.052 1.1E-06 60.1 12.0 180 182-374 15-215 (515)
242 PF08423 Rad51: Rad51; InterP 96.1 0.016 3.4E-07 59.2 7.6 67 193-260 25-95 (256)
243 PRK04296 thymidine kinase; Pro 96.1 0.0086 1.9E-07 58.3 5.4 111 206-321 3-117 (190)
244 PF00158 Sigma54_activat: Sigm 96.1 0.045 9.7E-07 51.9 10.0 42 186-227 2-44 (168)
245 KOG0731 AAA+-type ATPase conta 96.1 0.11 2.3E-06 59.8 14.4 169 182-376 310-521 (774)
246 TIGR03346 chaperone_ClpB ATP-d 96.1 0.081 1.8E-06 64.0 14.5 45 183-227 565-617 (852)
247 COG1618 Predicted nucleotide k 96.0 0.0058 1.3E-07 55.4 3.1 35 206-242 6-41 (179)
248 PRK06696 uridine kinase; Valid 96.0 0.0079 1.7E-07 60.3 4.6 40 188-227 3-44 (223)
249 KOG2123 Uncharacterized conser 95.9 0.00038 8.2E-09 68.3 -4.8 101 589-698 18-123 (388)
250 KOG0728 26S proteasome regulat 95.9 0.15 3.2E-06 49.7 12.4 138 187-347 151-331 (404)
251 TIGR02238 recomb_DMC1 meiotic 95.9 0.019 4.1E-07 60.3 7.1 68 193-261 83-154 (313)
252 COG0563 Adk Adenylate kinase a 95.9 0.008 1.7E-07 57.4 4.0 22 207-228 2-23 (178)
253 TIGR02858 spore_III_AA stage I 95.9 0.073 1.6E-06 54.6 11.2 123 192-322 98-231 (270)
254 cd01394 radB RadB. The archaea 95.9 0.02 4.4E-07 57.2 7.1 54 193-249 6-60 (218)
255 KOG0734 AAA+-type ATPase conta 95.9 0.083 1.8E-06 57.1 11.6 46 183-228 304-360 (752)
256 PRK07952 DNA replication prote 95.9 0.064 1.4E-06 54.1 10.4 98 205-320 99-205 (244)
257 TIGR02012 tigrfam_recA protein 95.9 0.013 2.8E-07 61.3 5.6 56 193-251 41-98 (321)
258 PRK08939 primosomal protein Dn 95.8 0.041 8.8E-07 57.7 9.2 97 204-320 155-261 (306)
259 KOG2123 Uncharacterized conser 95.8 0.0005 1.1E-08 67.5 -4.7 100 615-746 17-123 (388)
260 cd00983 recA RecA is a bacter 95.8 0.016 3.5E-07 60.6 5.9 56 193-251 41-98 (325)
261 COG1484 DnaC DNA replication p 95.8 0.028 6E-07 57.3 7.5 75 204-297 104-178 (254)
262 PRK09354 recA recombinase A; P 95.8 0.016 3.5E-07 61.1 5.9 56 193-251 46-103 (349)
263 PLN03187 meiotic recombination 95.8 0.022 4.8E-07 60.3 6.9 68 193-261 113-184 (344)
264 KOG1947 Leucine rich repeat pr 95.7 0.00041 8.9E-09 79.0 -6.6 11 766-776 403-413 (482)
265 KOG1644 U2-associated snRNP A' 95.7 0.014 3.1E-07 55.0 4.6 102 668-773 42-149 (233)
266 COG0542 clpA ATP-binding subun 95.6 0.022 4.7E-07 65.8 6.7 147 183-346 170-345 (786)
267 TIGR03345 VI_ClpV1 type VI sec 95.6 0.076 1.6E-06 63.9 11.4 46 182-227 565-618 (852)
268 PF13238 AAA_18: AAA domain; P 95.5 0.0095 2.1E-07 53.8 2.9 21 208-228 1-21 (129)
269 TIGR02974 phageshock_pspF psp 95.5 0.25 5.5E-06 52.6 14.0 42 186-227 2-44 (329)
270 KOG0743 AAA+-type ATPase [Post 95.5 0.24 5.3E-06 53.0 13.5 145 206-386 236-417 (457)
271 PF00485 PRK: Phosphoribulokin 95.5 0.01 2.2E-07 58.2 3.1 21 207-227 1-21 (194)
272 cd01122 GP4d_helicase GP4d_hel 95.5 0.14 2.9E-06 53.3 11.7 56 203-262 28-83 (271)
273 COG0470 HolB ATPase involved i 95.5 0.1 2.3E-06 55.8 11.2 130 186-333 4-167 (325)
274 TIGR02239 recomb_RAD51 DNA rep 95.5 0.037 8.1E-07 58.3 7.4 62 193-254 83-148 (316)
275 CHL00095 clpC Clp protease ATP 95.5 0.091 2E-06 63.4 11.6 46 182-227 508-561 (821)
276 PRK11608 pspF phage shock prot 95.5 0.35 7.6E-06 51.5 14.8 44 184-227 7-51 (326)
277 TIGR01817 nifA Nif-specific re 95.4 0.26 5.5E-06 56.7 14.7 46 182-227 195-241 (534)
278 cd03223 ABCD_peroxisomal_ALDP 95.4 0.087 1.9E-06 50.0 9.0 26 203-228 25-50 (166)
279 cd01131 PilT Pilus retraction 95.4 0.054 1.2E-06 53.1 7.7 107 206-321 2-110 (198)
280 PF13604 AAA_30: AAA domain; P 95.3 0.05 1.1E-06 53.2 7.3 101 204-320 17-131 (196)
281 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.8E-07 46.2 2.6 22 207-228 1-22 (69)
282 PTZ00035 Rad51 protein; Provis 95.3 0.06 1.3E-06 57.3 8.4 63 193-255 105-171 (337)
283 KOG0733 Nuclear AAA ATPase (VC 95.3 0.2 4.4E-06 55.3 12.2 122 204-348 544-693 (802)
284 cd03247 ABCC_cytochrome_bd The 95.3 0.08 1.7E-06 51.0 8.6 25 203-227 26-50 (178)
285 KOG0735 AAA+-type ATPase [Post 95.3 0.041 8.8E-07 61.5 7.0 73 204-296 430-504 (952)
286 COG1223 Predicted ATPase (AAA+ 95.3 0.21 4.5E-06 49.2 10.9 164 182-372 120-318 (368)
287 PRK15455 PrkA family serine pr 95.3 0.015 3.2E-07 64.5 3.6 44 184-227 77-125 (644)
288 TIGR00235 udk uridine kinase. 95.2 0.016 3.5E-07 57.4 3.7 25 203-227 4-28 (207)
289 PTZ00301 uridine kinase; Provi 95.2 0.016 3.5E-07 57.0 3.4 23 205-227 3-25 (210)
290 PRK08699 DNA polymerase III su 95.2 0.37 8E-06 51.1 13.8 61 286-346 113-184 (325)
291 TIGR01425 SRP54_euk signal rec 95.2 0.2 4.2E-06 54.7 11.9 25 203-227 98-122 (429)
292 COG0468 RecA RecA/RadA recombi 95.2 0.089 1.9E-06 53.7 8.8 58 195-255 49-107 (279)
293 PRK07667 uridine kinase; Provi 95.2 0.026 5.5E-07 55.2 4.8 35 193-227 4-39 (193)
294 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 56.1 3.4 23 205-227 3-25 (182)
295 PRK05480 uridine/cytidine kina 95.2 0.017 3.6E-07 57.4 3.6 25 203-227 4-28 (209)
296 cd01130 VirB11-like_ATPase Typ 95.2 0.038 8.2E-07 53.6 5.9 24 204-227 24-47 (186)
297 PF13671 AAA_33: AAA domain; P 95.1 0.016 3.5E-07 53.5 3.1 21 207-227 1-21 (143)
298 KOG0738 AAA+-type ATPase [Post 95.1 0.28 6E-06 51.3 12.0 44 184-227 213-267 (491)
299 PRK09270 nucleoside triphospha 95.1 0.027 5.8E-07 56.8 4.9 33 195-227 23-55 (229)
300 KOG0739 AAA+-type ATPase [Post 95.0 0.29 6.3E-06 49.1 11.3 45 183-227 133-188 (439)
301 PRK05541 adenylylsulfate kinas 95.0 0.023 4.9E-07 54.7 3.8 34 204-239 6-39 (176)
302 cd03222 ABC_RNaseL_inhibitor T 95.0 0.17 3.7E-06 48.4 9.6 25 203-227 23-47 (177)
303 COG1419 FlhF Flagellar GTP-bin 95.0 0.066 1.4E-06 56.8 7.3 42 204-247 202-244 (407)
304 TIGR03499 FlhF flagellar biosy 94.9 0.096 2.1E-06 54.5 8.5 41 204-246 193-234 (282)
305 PLN03186 DNA repair protein RA 94.9 0.057 1.2E-06 57.3 6.9 68 193-261 110-181 (342)
306 COG0572 Udk Uridine kinase [Nu 94.9 0.022 4.8E-07 55.3 3.4 25 203-227 6-30 (218)
307 PRK14722 flhF flagellar biosyn 94.9 0.095 2.1E-06 56.1 8.4 88 204-296 136-225 (374)
308 PRK05022 anaerobic nitric oxid 94.9 0.94 2E-05 51.6 17.1 46 182-227 186-232 (509)
309 TIGR02236 recomb_radA DNA repa 94.9 0.082 1.8E-06 56.1 8.0 63 194-256 83-149 (310)
310 COG2607 Predicted ATPase (AAA+ 94.9 0.17 3.8E-06 49.3 9.1 111 184-321 61-184 (287)
311 cd01121 Sms Sms (bacterial rad 94.9 0.088 1.9E-06 56.7 8.2 51 193-246 69-120 (372)
312 KOG0727 26S proteasome regulat 94.9 0.56 1.2E-05 45.9 12.5 45 184-228 156-212 (408)
313 PRK06762 hypothetical protein; 94.8 0.023 5.1E-07 54.0 3.3 23 205-227 2-24 (166)
314 PRK15429 formate hydrogenlyase 94.8 0.43 9.3E-06 56.7 14.4 45 183-227 376-421 (686)
315 PRK06547 hypothetical protein; 94.8 0.027 5.9E-07 53.6 3.6 27 202-228 12-38 (172)
316 TIGR01360 aden_kin_iso1 adenyl 94.8 0.023 5.1E-07 55.2 3.3 24 204-227 2-25 (188)
317 COG1428 Deoxynucleoside kinase 94.8 0.047 1E-06 52.3 5.0 47 205-257 4-50 (216)
318 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.36 7.8E-06 44.9 10.7 114 206-323 3-141 (159)
319 PRK10733 hflB ATP-dependent me 94.7 0.16 3.5E-06 59.4 10.5 122 205-349 185-337 (644)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.15 3.2E-06 47.1 8.3 26 203-228 24-49 (144)
321 PF12775 AAA_7: P-loop contain 94.7 0.037 8.1E-07 57.0 4.6 89 193-297 23-111 (272)
322 COG1875 NYN ribonuclease and A 94.7 0.16 3.4E-06 52.7 8.8 130 187-321 228-389 (436)
323 PRK10867 signal recognition pa 94.7 0.12 2.5E-06 56.7 8.5 25 203-227 98-122 (433)
324 PRK03839 putative kinase; Prov 94.7 0.025 5.4E-07 54.6 3.1 22 207-228 2-23 (180)
325 PF07726 AAA_3: ATPase family 94.6 0.016 3.5E-07 51.0 1.5 27 208-236 2-28 (131)
326 PRK10463 hydrogenase nickel in 94.6 0.057 1.2E-06 55.3 5.7 26 202-227 101-126 (290)
327 PRK06217 hypothetical protein; 94.6 0.06 1.3E-06 52.1 5.7 22 207-228 3-24 (183)
328 cd03214 ABC_Iron-Siderophores_ 94.6 0.24 5.1E-06 47.8 9.8 36 203-241 23-58 (180)
329 PHA00729 NTP-binding motif con 94.6 0.044 9.5E-07 53.9 4.6 24 204-227 16-39 (226)
330 PRK04301 radA DNA repair and r 94.6 0.1 2.2E-06 55.5 7.7 65 193-257 89-157 (317)
331 KOG1947 Leucine rich repeat pr 94.6 0.0071 1.5E-07 68.8 -1.1 133 639-773 187-330 (482)
332 PRK12723 flagellar biosynthesi 94.5 0.12 2.6E-06 55.9 8.1 89 204-296 173-264 (388)
333 COG0541 Ffh Signal recognition 94.5 2.5 5.4E-05 45.4 17.4 57 203-262 98-155 (451)
334 PF00910 RNA_helicase: RNA hel 94.5 0.024 5.2E-07 49.3 2.2 20 208-227 1-20 (107)
335 PRK04040 adenylate kinase; Pro 94.4 0.032 6.9E-07 54.1 3.2 23 205-227 2-24 (188)
336 cd02023 UMPK Uridine monophosp 94.4 0.025 5.5E-07 55.6 2.6 21 207-227 1-21 (198)
337 cd02025 PanK Pantothenate kina 94.4 0.025 5.4E-07 56.4 2.5 21 207-227 1-21 (220)
338 PTZ00088 adenylate kinase 1; P 94.4 0.07 1.5E-06 53.3 5.6 20 208-227 9-28 (229)
339 TIGR02322 phosphon_PhnN phosph 94.3 0.032 7E-07 53.8 3.1 23 206-228 2-24 (179)
340 cd03115 SRP The signal recogni 94.3 0.092 2E-06 50.3 6.2 21 207-227 2-22 (173)
341 PRK00771 signal recognition pa 94.2 0.14 3.1E-06 56.2 8.1 24 204-227 94-117 (437)
342 cd02024 NRK1 Nicotinamide ribo 94.2 0.03 6.4E-07 53.9 2.5 21 207-227 1-21 (187)
343 COG1066 Sms Predicted ATP-depe 94.2 0.12 2.5E-06 54.7 6.9 98 193-297 80-179 (456)
344 PRK11388 DNA-binding transcrip 94.2 0.71 1.5E-05 54.4 14.6 45 183-227 325-370 (638)
345 cd01135 V_A-ATPase_B V/A-type 94.2 0.089 1.9E-06 53.4 6.0 64 196-260 60-126 (276)
346 PRK12678 transcription termina 94.2 0.093 2E-06 58.2 6.5 102 194-298 405-515 (672)
347 TIGR00150 HI0065_YjeE ATPase, 94.2 0.063 1.4E-06 48.2 4.3 25 204-228 21-45 (133)
348 KOG2035 Replication factor C, 94.2 2.8 6E-05 42.1 15.8 196 185-400 15-260 (351)
349 PRK00625 shikimate kinase; Pro 94.2 0.033 7.1E-07 53.0 2.7 21 207-227 2-22 (173)
350 KOG0652 26S proteasome regulat 94.2 0.48 1E-05 46.5 10.5 50 184-235 172-233 (424)
351 PF03193 DUF258: Protein of un 94.2 0.073 1.6E-06 49.5 4.8 35 190-228 24-58 (161)
352 TIGR03263 guanyl_kin guanylate 94.1 0.037 8E-07 53.4 3.1 22 206-227 2-23 (180)
353 PRK00889 adenylylsulfate kinas 94.1 0.044 9.5E-07 52.6 3.6 24 204-227 3-26 (175)
354 KOG0735 AAA+-type ATPase [Post 94.1 0.9 1.9E-05 51.4 13.7 120 205-347 701-848 (952)
355 PF00154 RecA: recA bacterial 94.1 0.047 1E-06 56.9 3.9 47 203-252 51-97 (322)
356 COG1102 Cmk Cytidylate kinase 94.1 0.035 7.6E-07 50.5 2.5 22 207-228 2-23 (179)
357 COG4608 AppF ABC-type oligopep 94.1 0.42 9.2E-06 48.0 10.3 118 203-323 37-173 (268)
358 TIGR00390 hslU ATP-dependent p 94.1 0.11 2.5E-06 55.7 6.7 45 183-227 12-69 (441)
359 TIGR01420 pilT_fam pilus retra 94.1 0.15 3.2E-06 54.8 7.7 117 194-321 113-231 (343)
360 PRK12597 F0F1 ATP synthase sub 94.1 0.073 1.6E-06 58.5 5.4 63 195-259 133-196 (461)
361 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.033 7.2E-07 53.9 2.5 21 207-227 1-21 (183)
362 PRK05800 cobU adenosylcobinami 94.0 0.19 4.1E-06 47.7 7.5 21 207-227 3-23 (170)
363 PRK11823 DNA repair protein Ra 94.0 0.16 3.5E-06 56.4 8.1 52 193-247 67-119 (446)
364 PF00560 LRR_1: Leucine Rich R 94.0 0.026 5.6E-07 33.0 1.0 21 618-638 1-21 (22)
365 PRK00131 aroK shikimate kinase 94.0 0.046 9.9E-07 52.4 3.3 24 204-227 3-26 (175)
366 PRK09280 F0F1 ATP synthase sub 93.9 0.093 2E-06 57.5 5.8 101 195-297 134-249 (463)
367 cd00227 CPT Chloramphenicol (C 93.9 0.044 9.4E-07 52.6 3.1 22 206-227 3-24 (175)
368 PRK10751 molybdopterin-guanine 93.9 0.056 1.2E-06 51.0 3.6 24 204-227 5-28 (173)
369 cd02028 UMPK_like Uridine mono 93.9 0.04 8.6E-07 53.0 2.6 21 207-227 1-21 (179)
370 TIGR00959 ffh signal recogniti 93.9 0.22 4.9E-06 54.5 8.6 40 204-245 98-137 (428)
371 PF03205 MobB: Molybdopterin g 93.8 0.052 1.1E-06 49.7 3.1 23 206-228 1-23 (140)
372 PRK06002 fliI flagellum-specif 93.8 0.17 3.7E-06 55.2 7.6 91 203-297 163-265 (450)
373 cd00071 GMPK Guanosine monopho 93.8 0.047 1E-06 49.9 2.8 21 207-227 1-21 (137)
374 COG0003 ArsA Predicted ATPase 93.8 0.088 1.9E-06 55.2 5.1 49 205-256 2-50 (322)
375 PRK13531 regulatory ATPase Rav 93.8 0.062 1.3E-06 58.9 4.1 42 183-227 20-61 (498)
376 COG1936 Predicted nucleotide k 93.8 0.048 1E-06 50.4 2.8 20 207-226 2-21 (180)
377 cd02021 GntK Gluconate kinase 93.8 0.042 9.2E-07 51.2 2.6 21 207-227 1-21 (150)
378 cd00544 CobU Adenosylcobinamid 93.8 0.26 5.6E-06 46.7 7.9 43 208-257 2-44 (169)
379 PRK00300 gmk guanylate kinase; 93.7 0.055 1.2E-06 53.5 3.4 24 204-227 4-27 (205)
380 cd00820 PEPCK_HprK Phosphoenol 93.7 0.06 1.3E-06 46.2 3.1 23 204-226 14-36 (107)
381 TIGR00416 sms DNA repair prote 93.7 0.13 2.9E-06 57.1 6.6 53 191-246 79-132 (454)
382 PF08477 Miro: Miro-like prote 93.6 0.058 1.2E-06 47.9 3.1 23 208-230 2-24 (119)
383 TIGR01039 atpD ATP synthase, F 93.6 0.13 2.8E-06 56.2 6.2 100 196-297 134-248 (461)
384 cd02020 CMPK Cytidine monophos 93.6 0.046 1E-06 50.6 2.6 21 207-227 1-21 (147)
385 PRK14737 gmk guanylate kinase; 93.6 0.062 1.4E-06 51.9 3.5 24 204-227 3-26 (186)
386 COG1124 DppF ABC-type dipeptid 93.6 0.056 1.2E-06 52.9 3.0 25 203-227 31-55 (252)
387 PRK05703 flhF flagellar biosyn 93.6 0.23 4.9E-06 54.8 8.1 40 205-246 221-261 (424)
388 PRK05439 pantothenate kinase; 93.5 0.088 1.9E-06 54.9 4.6 25 203-227 84-108 (311)
389 PRK08972 fliI flagellum-specif 93.5 0.15 3.3E-06 55.3 6.6 90 203-297 160-263 (444)
390 PF01583 APS_kinase: Adenylyls 93.5 0.064 1.4E-06 49.6 3.2 28 205-234 2-29 (156)
391 TIGR00554 panK_bact pantothena 93.5 0.061 1.3E-06 55.6 3.4 24 203-226 60-83 (290)
392 PRK13949 shikimate kinase; Pro 93.5 0.059 1.3E-06 51.3 3.1 22 206-227 2-23 (169)
393 PF06745 KaiC: KaiC; InterPro 93.5 0.087 1.9E-06 53.0 4.5 59 194-256 7-66 (226)
394 PRK10078 ribose 1,5-bisphospho 93.5 0.058 1.3E-06 52.4 3.1 22 206-227 3-24 (186)
395 PRK13947 shikimate kinase; Pro 93.5 0.051 1.1E-06 51.9 2.7 21 207-227 3-23 (171)
396 TIGR03575 selen_PSTK_euk L-ser 93.5 0.19 4E-06 53.2 7.0 21 208-228 2-22 (340)
397 COG0488 Uup ATPase components 93.5 0.16 3.4E-06 57.3 6.8 25 203-227 346-370 (530)
398 PF02374 ArsA_ATPase: Anion-tr 93.5 0.092 2E-06 55.1 4.7 46 206-254 2-47 (305)
399 COG0194 Gmk Guanylate kinase [ 93.5 0.067 1.4E-06 50.3 3.2 24 205-228 4-27 (191)
400 PRK12726 flagellar biosynthesi 93.5 0.24 5.2E-06 52.6 7.7 42 203-247 204-245 (407)
401 COG0467 RAD55 RecA-superfamily 93.4 0.18 4E-06 51.9 6.9 58 196-258 13-71 (260)
402 TIGR02788 VirB11 P-type DNA tr 93.4 0.17 3.8E-06 53.3 6.7 110 204-320 143-253 (308)
403 cd01129 PulE-GspE PulE/GspE Th 93.4 0.27 5.9E-06 50.5 7.9 101 204-318 79-181 (264)
404 KOG0744 AAA+-type ATPase [Post 93.3 0.061 1.3E-06 54.5 2.9 35 205-239 177-213 (423)
405 PF00006 ATP-synt_ab: ATP synt 93.3 0.11 2.4E-06 51.2 4.7 60 195-259 5-65 (215)
406 PRK14530 adenylate kinase; Pro 93.3 0.062 1.4E-06 53.5 3.0 21 207-227 5-25 (215)
407 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.14 3E-06 52.5 5.5 41 203-246 34-74 (259)
408 PLN02348 phosphoribulokinase 93.2 0.1 2.2E-06 55.6 4.6 32 196-227 40-71 (395)
409 COG2019 AdkA Archaeal adenylat 93.2 0.074 1.6E-06 48.7 3.0 23 205-227 4-26 (189)
410 PF13245 AAA_19: Part of AAA d 93.2 0.16 3.4E-06 40.8 4.6 23 204-226 9-31 (76)
411 KOG3864 Uncharacterized conser 93.2 0.023 4.9E-07 53.8 -0.3 81 693-773 102-185 (221)
412 KOG0924 mRNA splicing factor A 93.2 0.47 1E-05 52.9 9.5 114 203-322 369-512 (1042)
413 PRK03846 adenylylsulfate kinas 93.2 0.081 1.8E-06 51.9 3.6 25 203-227 22-46 (198)
414 PHA02774 E1; Provisional 93.2 0.34 7.4E-06 54.1 8.6 36 192-227 421-456 (613)
415 TIGR01313 therm_gnt_kin carboh 93.2 0.056 1.2E-06 51.2 2.4 20 208-227 1-20 (163)
416 PRK05201 hslU ATP-dependent pr 93.1 0.17 3.6E-06 54.5 5.9 45 183-227 15-72 (443)
417 PRK05057 aroK shikimate kinase 93.1 0.082 1.8E-06 50.5 3.3 23 205-227 4-26 (172)
418 PF00625 Guanylate_kin: Guanyl 93.0 0.094 2E-06 50.7 3.8 30 205-236 2-31 (183)
419 PRK12339 2-phosphoglycerate ki 93.0 0.086 1.9E-06 51.4 3.4 23 205-227 3-25 (197)
420 TIGR00073 hypB hydrogenase acc 93.0 0.12 2.6E-06 51.2 4.4 27 201-227 18-44 (207)
421 PRK06995 flhF flagellar biosyn 93.0 0.39 8.4E-06 53.3 8.7 24 205-228 256-279 (484)
422 PRK14527 adenylate kinase; Pro 93.0 0.091 2E-06 51.2 3.6 25 204-228 5-29 (191)
423 cd00464 SK Shikimate kinase (S 92.9 0.074 1.6E-06 49.7 2.8 20 208-227 2-21 (154)
424 cd01125 repA Hexameric Replica 92.9 0.64 1.4E-05 47.2 9.8 21 207-227 3-23 (239)
425 PRK14526 adenylate kinase; Pro 92.9 0.29 6.3E-06 48.3 7.0 20 208-227 3-22 (211)
426 TIGR01069 mutS2 MutS2 family p 92.9 0.39 8.5E-06 57.1 9.3 107 285-400 401-522 (771)
427 PLN02318 phosphoribulokinase/u 92.9 0.11 2.5E-06 58.0 4.5 32 196-227 55-87 (656)
428 PRK12727 flagellar biosynthesi 92.9 0.29 6.2E-06 54.4 7.5 24 204-227 349-372 (559)
429 PRK00409 recombination and DNA 92.9 0.55 1.2E-05 56.1 10.4 174 203-400 325-527 (782)
430 TIGR03305 alt_F1F0_F1_bet alte 92.8 0.18 3.8E-06 55.2 5.8 100 196-297 129-243 (449)
431 COG3640 CooC CO dehydrogenase 92.8 0.16 3.4E-06 49.5 4.8 41 207-250 2-43 (255)
432 PRK13975 thymidylate kinase; P 92.8 0.087 1.9E-06 51.6 3.2 22 206-227 3-24 (196)
433 TIGR03877 thermo_KaiC_1 KaiC d 92.8 0.3 6.5E-06 49.4 7.2 60 193-257 8-68 (237)
434 cd02027 APSK Adenosine 5'-phos 92.8 0.074 1.6E-06 49.4 2.6 21 207-227 1-21 (149)
435 PRK13948 shikimate kinase; Pro 92.8 0.092 2E-06 50.4 3.2 24 204-227 9-32 (182)
436 PRK14738 gmk guanylate kinase; 92.8 0.1 2.2E-06 51.5 3.7 25 203-227 11-35 (206)
437 KOG0736 Peroxisome assembly fa 92.8 0.39 8.4E-06 54.7 8.3 91 185-298 674-776 (953)
438 PRK08149 ATP synthase SpaL; Va 92.8 0.32 6.9E-06 53.0 7.6 90 203-297 149-252 (428)
439 KOG1051 Chaperone HSP104 and r 92.8 0.59 1.3E-05 55.2 10.2 52 183-236 562-620 (898)
440 KOG0651 26S proteasome regulat 92.7 0.16 3.5E-06 51.3 4.8 31 203-235 164-194 (388)
441 PRK08927 fliI flagellum-specif 92.7 0.29 6.2E-06 53.5 7.2 90 203-297 156-259 (442)
442 PRK11889 flhF flagellar biosyn 92.7 0.093 2E-06 55.8 3.4 24 204-227 240-263 (436)
443 PRK06067 flagellar accessory p 92.7 0.27 6E-06 49.7 6.8 60 193-257 12-72 (234)
444 TIGR01040 V-ATPase_V1_B V-type 92.7 0.26 5.7E-06 53.7 6.7 93 203-297 139-258 (466)
445 cd03281 ABC_MSH5_euk MutS5 hom 92.5 0.74 1.6E-05 45.6 9.3 23 205-227 29-51 (213)
446 COG0465 HflB ATP-dependent Zn 92.5 0.86 1.9E-05 51.5 10.6 52 180-231 147-209 (596)
447 COG1126 GlnQ ABC-type polar am 92.4 0.1 2.3E-06 50.1 3.0 25 203-227 26-50 (240)
448 PF00005 ABC_tran: ABC transpo 92.4 0.1 2.2E-06 47.6 3.0 24 204-227 10-33 (137)
449 PRK10820 DNA-binding transcrip 92.4 0.67 1.4E-05 52.9 10.1 46 182-227 203-249 (520)
450 PRK09825 idnK D-gluconate kina 92.4 0.1 2.3E-06 49.9 3.1 22 206-227 4-25 (176)
451 PF03266 NTPase_1: NTPase; In 92.4 0.099 2.1E-06 49.5 2.9 21 208-228 2-22 (168)
452 COG2274 SunT ABC-type bacterio 92.4 0.68 1.5E-05 54.3 10.2 25 203-227 497-521 (709)
453 PRK05922 type III secretion sy 92.4 0.43 9.4E-06 52.1 8.0 90 203-297 155-258 (434)
454 PF00560 LRR_1: Leucine Rich R 92.4 0.074 1.6E-06 31.0 1.2 9 694-702 2-10 (22)
455 TIGR00176 mobB molybdopterin-g 92.4 0.093 2E-06 49.0 2.6 21 207-227 1-21 (155)
456 PF13521 AAA_28: AAA domain; P 92.3 0.095 2.1E-06 49.6 2.7 20 208-227 2-21 (163)
457 cd01136 ATPase_flagellum-secre 92.3 0.47 1E-05 49.9 8.0 90 203-297 67-170 (326)
458 PRK13946 shikimate kinase; Pro 92.3 0.1 2.2E-06 50.5 2.9 23 205-227 10-32 (184)
459 PF10662 PduV-EutP: Ethanolami 92.3 0.11 2.4E-06 47.1 2.9 23 206-228 2-24 (143)
460 COG0714 MoxR-like ATPases [Gen 92.3 0.23 5E-06 53.1 5.9 61 185-254 26-86 (329)
461 PRK05973 replicative DNA helic 92.3 0.36 7.7E-06 48.3 6.7 50 203-257 62-111 (237)
462 PRK05917 DNA polymerase III su 92.3 4.6 9.9E-05 41.8 14.8 36 192-227 6-41 (290)
463 TIGR02655 circ_KaiC circadian 92.2 0.3 6.5E-06 55.2 6.9 59 194-256 9-68 (484)
464 TIGR02782 TrbB_P P-type conjug 92.2 0.17 3.8E-06 52.9 4.6 23 205-227 132-154 (299)
465 KOG3347 Predicted nucleotide k 92.2 0.1 2.2E-06 46.7 2.4 35 205-247 7-41 (176)
466 cd04139 RalA_RalB RalA/RalB su 92.2 0.12 2.6E-06 48.7 3.2 23 207-229 2-24 (164)
467 TIGR02524 dot_icm_DotB Dot/Icm 92.2 0.23 5.1E-06 53.2 5.7 115 194-317 125-243 (358)
468 PLN02200 adenylate kinase fami 92.1 0.13 2.7E-06 51.8 3.4 24 204-227 42-65 (234)
469 COG5635 Predicted NTPase (NACH 92.1 0.15 3.3E-06 61.6 4.7 189 205-399 222-448 (824)
470 COG0703 AroK Shikimate kinase 92.1 0.11 2.4E-06 48.6 2.7 22 206-227 3-24 (172)
471 TIGR00064 ftsY signal recognit 92.1 0.13 2.8E-06 53.0 3.6 40 203-245 70-109 (272)
472 KOG1532 GTPase XAB1, interacts 92.1 0.11 2.3E-06 51.5 2.6 26 203-228 17-42 (366)
473 PRK10416 signal recognition pa 92.1 0.13 2.8E-06 54.3 3.5 39 203-244 112-150 (318)
474 KOG0729 26S proteasome regulat 92.1 0.51 1.1E-05 46.5 7.2 44 184-227 178-233 (435)
475 COG0464 SpoVK ATPases of the A 92.1 1.3 2.9E-05 50.3 12.0 124 203-349 274-425 (494)
476 COG0378 HypB Ni2+-binding GTPa 92.0 0.18 4E-06 47.7 4.1 33 205-239 13-45 (202)
477 PRK14721 flhF flagellar biosyn 91.9 0.64 1.4E-05 50.7 8.7 24 204-227 190-213 (420)
478 PRK07132 DNA polymerase III su 91.9 10 0.00022 39.7 17.2 159 194-378 7-184 (299)
479 PTZ00185 ATPase alpha subunit; 91.9 0.35 7.6E-06 53.2 6.6 93 203-297 187-300 (574)
480 PRK05342 clpX ATP-dependent pr 91.9 0.17 3.7E-06 55.3 4.3 45 183-227 71-130 (412)
481 PF01078 Mg_chelatase: Magnesi 91.9 0.22 4.8E-06 48.2 4.6 41 184-227 4-44 (206)
482 PRK14723 flhF flagellar biosyn 91.9 0.53 1.1E-05 55.0 8.4 23 205-227 185-207 (767)
483 cd01132 F1_ATPase_alpha F1 ATP 91.9 0.68 1.5E-05 47.1 8.2 92 203-298 67-173 (274)
484 PRK04182 cytidylate kinase; Pr 91.8 0.13 2.9E-06 49.5 3.1 21 207-227 2-22 (180)
485 TIGR03498 FliI_clade3 flagella 91.8 0.36 7.9E-06 52.6 6.6 91 203-297 138-241 (418)
486 PRK15453 phosphoribulokinase; 91.8 0.15 3.3E-06 51.8 3.5 24 204-227 4-27 (290)
487 COG1100 GTPase SAR1 and relate 91.8 0.12 2.6E-06 51.7 2.8 23 206-228 6-28 (219)
488 PF06309 Torsin: Torsin; Inte 91.8 0.26 5.6E-06 43.4 4.4 43 186-228 28-76 (127)
489 PF13086 AAA_11: AAA domain; P 91.8 0.2 4.2E-06 50.6 4.4 52 207-259 19-75 (236)
490 PF14532 Sigma54_activ_2: Sigm 91.8 0.12 2.7E-06 47.3 2.6 43 186-228 1-44 (138)
491 PF03308 ArgK: ArgK protein; 91.7 0.24 5.3E-06 49.4 4.8 36 193-228 16-52 (266)
492 TIGR02173 cyt_kin_arch cytidyl 91.7 0.14 3E-06 48.8 3.1 21 207-227 2-22 (171)
493 PRK14532 adenylate kinase; Pro 91.7 0.13 2.7E-06 50.1 2.8 20 208-227 3-22 (188)
494 PRK13768 GTPase; Provisional 91.7 0.14 3.1E-06 52.3 3.2 23 205-227 2-24 (253)
495 cd03116 MobB Molybdenum is an 91.7 0.15 3.4E-06 47.6 3.2 22 206-227 2-23 (159)
496 TIGR03880 KaiC_arch_3 KaiC dom 91.7 0.49 1.1E-05 47.4 7.1 57 195-256 5-62 (224)
497 COG0055 AtpD F0F1-type ATP syn 91.7 0.12 2.7E-06 53.4 2.7 111 195-307 137-266 (468)
498 PRK09435 membrane ATPase/prote 91.7 0.33 7.1E-06 51.3 5.9 34 194-227 44-78 (332)
499 PLN02165 adenylate isopentenyl 91.7 0.15 3.2E-06 53.4 3.3 25 203-227 41-65 (334)
500 cd01124 KaiC KaiC is a circadi 91.6 0.17 3.7E-06 49.1 3.6 44 208-256 2-45 (187)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.3e-72 Score=685.07 Aligned_cols=658 Identities=21% Similarity=0.269 Sum_probs=466.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 003325 4 TDLFAGEIAAELLKMLISICRRSSLCKSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKVL 83 (829)
Q Consensus 4 ~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~l 83 (829)
.++|++....++...+.|++.+++..+|+. .+...+.+..+.-.+.+..-+++-|-|+...++.|
T Consensus 13 ~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~---------------~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 13 YDVFPSFSGEDVRITFLSHFLKELDRKLII---------------AFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CcEEeeCCCcccccCHHHHHHHHHHHCCCe---------------EEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 467788877888888888888876555432 22211111112223455556666666777788999
Q ss_pred cCCchhhhhcHHHHHHHHHHHHHHhhhhccccchhh-hccchhhhHhhhhHHhhhHH--HHHHHHHHhhccccccCCCCc
Q 003325 84 ASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEG--SARRLEQRLGAMRIGVGGGGW 160 (829)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~ 160 (829)
+++.||+ +|++++++|.++. +....|+||+| |+||+++.+.|+++|.+++. ..+++++|++|+....+.+||
T Consensus 78 a~s~wcl---~el~~i~~~~~~~--~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~ 152 (1153)
T PLN03210 78 ASSSWCL---NELLEIVRCKEEL--GQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY 152 (1153)
T ss_pred ccchHHH---HHHHHHHHhhhhc--CceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCce
Confidence 9999999 6899999987653 44678999999 99999999999999998764 347899999998866666665
Q ss_pred ch-----hhhhhhhhh-hhh----hhcCCCCcccccccchhhHHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhhcc
Q 003325 161 VD-----EAVKRVEME-EDT----LAEGGLGNLMGIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRDH 229 (829)
Q Consensus 161 ~~-----~~~~~~~~~-~~~----~~~~~~~~~~~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 229 (829)
.. ++... +++ .++ ..+.+.+...+|||+.+++++..+|.. .+++++|+||||||+||||||+++|+
T Consensus 153 ~~~~~~~E~~~i-~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~-- 229 (1153)
T PLN03210 153 HSQNWPNEAKMI-EEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS-- 229 (1153)
T ss_pred ecCCCCCHHHHH-HHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--
Confidence 43 22111 111 111 112223456789999999999998853 47899999999999999999999995
Q ss_pred ccccccCCeEEEEE---eCCC-----------CC-HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcC
Q 003325 230 QVTSYFNNRILFLT---VSQS-----------PN-VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDD 294 (829)
Q Consensus 230 ~~~~~F~~~~~wv~---v~~~-----------~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDd 294 (829)
++..+|+..+ |+. ++.. .+ ...++++++..+....... ........+.+.++|+||||||
T Consensus 230 ~l~~~F~g~v-fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~----~~~~~~~~~~L~~krvLLVLDd 304 (1153)
T PLN03210 230 RLSRQFQSSV-FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK----IYHLGAMEERLKHRKVLIFIDD 304 (1153)
T ss_pred HHhhcCCeEE-EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc----cCCHHHHHHHHhCCeEEEEEeC
Confidence 6788898776 442 1111 01 1234555555554332211 1112334455689999999999
Q ss_pred CCChHhHHHhhhc----CCCceEEEEeeccccc---cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHH
Q 003325 295 VWSLAVLEQLIFR----VPGCKTLVVSRFKFST---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVK 367 (829)
Q Consensus 295 v~~~~~~~~l~~~----~~gs~iivTtR~~~~~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~ 367 (829)
||+.++|+.+... ++||+||||||++.++ +...+|+++.|++++||+||+++||+...++ ....+++++|++
T Consensus 305 v~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 305 LDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred CCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 9999999998763 5799999999999876 3568999999999999999999999876543 345679999999
Q ss_pred HcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCCh-hHHHHHHhhCCCCCCCccCHH
Q 003325 368 KCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPK-KVKECFLDLGSFPEDKKIPLE 446 (829)
Q Consensus 368 ~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~fp~~~~i~~~ 446 (829)
+|+|+|||++++|++|++++..+|+.+++++++.. +.++..+|++||++|++ ..|.||+++||||.+..++
T Consensus 384 ~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~-- 455 (1153)
T PLN03210 384 RAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN-- 455 (1153)
T ss_pred HhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH--
Confidence 99999999999999999999999999999987633 46799999999999976 5999999999999987653
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhcchhhhhhhcccCccccccccccchhhHHHHHHHHHhhccCC--cccccceeec
Q 003325 447 VLINMWVEIHDLDEEEAFAILVELSDRNLLKIVKDARAGDMYSSYYEISVTQHDVLRDLALHLSNQEN--INDRKRLLMP 524 (829)
Q Consensus 447 ~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~~--~~~~~~l~~~ 524 (829)
.+..|++.++...+. .++.|++++|++... ..+.|||++|+||+++++++. ++++.++|.+
T Consensus 456 -~v~~~l~~~~~~~~~---~l~~L~~ksLi~~~~-------------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~ 518 (1153)
T PLN03210 456 -DIKLLLANSDLDVNI---GLKNLVDKSLIHVRE-------------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA 518 (1153)
T ss_pred -HHHHHHHhcCCCchh---ChHHHHhcCCEEEcC-------------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence 467788877665443 488899999997542 147999999999999988764 5678888876
Q ss_pred cCcCCCchhhhhhcCCCCcceEEEeeeCCcccccccc---ccCCceEEEEEeccC-----CCccccChhhhcCC-CCceE
Q 003325 525 RRDTELPKEWERNVDQPFNAQIVSIHTGDMREMDWFR---MEFPKAEVLILNFSS-----TEEYFLPPFIENME-KLRAL 595 (829)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~lsi~~~~~~~~~~~~---~~~~~l~~l~L~~~~-----~~~~~lp~~~~~l~-~Lr~L 595 (829)
.+...+ ...+. ....++.+++...+..+.+... ..+++|+.|.+..+. .....+|..|..++ +||.|
T Consensus 519 ~di~~v---l~~~~-g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 519 KDICDV---LEDNT-GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred HHHHHH---HHhCc-ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 543211 11111 1234566666555544433322 235667766664332 11234666666664 58888
Q ss_pred EEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCcccccccccc
Q 003325 596 IVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTF 675 (829)
Q Consensus 596 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L 675 (829)
.+.++..... +..-.+.+|+.|+++++.+..+|.++..+++|+.|+|++|......+. ...+++|+.|+|
T Consensus 595 ~~~~~~l~~l-----P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L 664 (1153)
T PLN03210 595 RWDKYPLRCM-----PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKL 664 (1153)
T ss_pred EecCCCCCCC-----CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEe
Confidence 8876643221 111245678888888888888887777788888888877654333322 234677777777
Q ss_pred ccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCC
Q 003325 676 DHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLR 730 (829)
Q Consensus 676 ~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~ 730 (829)
++|..+..+|.+++++++|+.|++++|..+..+|..+ ++++|+.|++++|..+.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc
Confidence 7777777777777777777777777777777777554 56666666666665443
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-69 Score=627.15 Aligned_cols=717 Identities=21% Similarity=0.254 Sum_probs=478.7
Q ss_pred HHHHHHhhhhc-cchhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhcHH
Q 003325 17 KMLISICRRSS-LCKSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKVLASTRWNVYKNLQ 95 (829)
Q Consensus 17 ~~l~s~~~~~~-~~~~~~~~~~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~ld~~~~~~~~~~~ 95 (829)
+++.+++.+++ .+.+..+.+ ..|++.+..++.+++ +++..+........|.+..++.+|++++.++.+.....+. +
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i-~~Lk~~L~~l~~~l~-d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~-~ 86 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYI-LELKENLKALQSALE-DLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIER-K 86 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33444444544 333444455 889999999999998 7777777778899999999999999999998765433210 0
Q ss_pred HHHHHHHHHHHHhhhhccccchhhhccchhhhHhhhhHHhhhHHH----HHHHHHHhhccccccCCCCcchhhhhhhhhh
Q 003325 96 LARKMEKLEKKVSRFLNGPMQAHVLADVHHMRFETAERFDRMEGS----ARRLEQRLGAMRIGVGGGGWVDEAVKRVEME 171 (829)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (829)
....+.......++.. .. ..+.+....+..+.++ .+.++.....-.+... +.+..+ .+.
T Consensus 87 ~~~~l~~~~~~~~~~c-~~----------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~-~~~~~~-----~~~ 149 (889)
T KOG4658|consen 87 ANDLLSTRSVERQRLC-LC----------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV-GESLDP-----REK 149 (889)
T ss_pred HhHHhhhhHHHHHHHh-hh----------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc-cccccc-----hhh
Confidence 1111110000011110 00 0122222222222211 1222222111101111 111000 000
Q ss_pred hhhhhcCCCCcccc-cccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc-cccccCCeEEEEEeCCCCC
Q 003325 172 EDTLAEGGLGNLMG-IGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 172 ~~~~~~~~~~~~~~-vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~~~~~ 249 (829)
. ... +..+.. ||.+..++++.+.|.+.+. .+++|+||||+||||||+.++|+.. ++++|+..+ ||+||+.++
T Consensus 150 ~---e~~-~~~~~~~VG~e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~i-WV~VSk~f~ 223 (889)
T KOG4658|consen 150 V---ETR-PIQSESDVGLETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVI-WVVVSKEFT 223 (889)
T ss_pred c---ccC-CCCccccccHHHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEE-EEEEccccc
Confidence 0 011 111112 9999999999999996544 9999999999999999999999988 999999655 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcchhh-HHHHhhcCCcEEEEEcCCCChHhHHHhhhcCC----CceEEEEeeccccc-
Q 003325 250 VEQLRAKVWGFVSGCDSMEPNYVIPHWN-LQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVP----GCKTLVVSRFKFST- 323 (829)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~----gs~iivTtR~~~~~- 323 (829)
...++++|++.++..............+ .+.+.++++||+|||||||+..+|+.+...+| ||||++|||++.++
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 9999999999987644333222223333 34455699999999999999999999998766 79999999999988
Q ss_pred ---cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCC-hhHHHHHHHHhc
Q 003325 324 ---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP-EMYWTSAKKRLS 399 (829)
Q Consensus 324 ---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~~w~~~l~~l~ 399 (829)
+....++++.|+++|||.||++.||..........+++|++|+++|+|+|||++++|+.|+.+. ..+|+++...+.
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 3457799999999999999999999875444344788999999999999999999999999874 679999999887
Q ss_pred cCCCC-ccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCH--------HHHHHHHHHH
Q 003325 400 KGEPI-CESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDE--------EEAFAILVEL 470 (829)
Q Consensus 400 ~~~~~-~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~--------~~~~~~l~~L 470 (829)
+.... .....+.+++++++||+.||++.|.||+|||+||++|.|+.+.|+..|+|+|++.+ ++|.+|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 75322 23346789999999999999999999999999999999999999999999998754 6899999999
Q ss_pred hhcchhhhhhhcccCccccccccccchhhHHHHHHHHHhhccCCcccccceeecc-CcCCCchhhhhhcCCCCcceEEEe
Q 003325 471 SDRNLLKIVKDARAGDMYSSYYEISVTQHDVLRDLALHLSNQENINDRKRLLMPR-RDTELPKEWERNVDQPFNAQIVSI 549 (829)
Q Consensus 471 ~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~lsi 549 (829)
++++|++..... +... +|.|||+|||+|..++++........+.... .-...+ +.......|++++
T Consensus 464 V~~~Ll~~~~~~--~~~~------~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~-----~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 464 VRASLLIEERDE--GRKE------TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP-----QVKSWNSVRRMSL 530 (889)
T ss_pred HHHHHHhhcccc--ccee------EEEeeHHHHHHHHHHhccccccccceEEECCcCccccc-----cccchhheeEEEE
Confidence 999999866533 2222 6899999999999999854432211111111 001111 1111234688888
Q ss_pred eeCCccccccccccCCceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccc
Q 003325 550 HTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS 628 (829)
Q Consensus 550 ~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 628 (829)
+..+..... ....+|++++|.+..+......++ ..|..|+.||+|++++|..... .+..+++|-+||+|+++++.
T Consensus 531 ~~~~~~~~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~---LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 531 MNNKIEHIA-GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK---LPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred eccchhhcc-CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc---CChHHhhhhhhhcccccCCC
Confidence 766543332 234567888887766542133344 5588899999999998654322 23457789999999999999
Q ss_pred cCCCCCCccccCCCceEEeeeccccccccccccccCCcccccccccccccc-c-cccCCccccCcCCCcEEEeccccc--
Q 003325 629 ISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCD-D-LMKLPPSICGLQSLKNLSVTNCHS-- 704 (829)
Q Consensus 629 i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~-~~~lp~~i~~l~~L~~L~l~~~~~-- 704 (829)
++.+|.++.+++.|.+|++..+...... +.....+++|++|.+.... . ....-..+.++.+|+.|....+..
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccc----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh
Confidence 9999999999999999999977654433 3333458889998876543 1 111122234555555555543321
Q ss_pred -----------------------cccchhhccCCCCCCEEecccCCcCCcccccc-----cC-CCCCCEEeccCCcCCCC
Q 003325 705 -----------------------LQELPADIGKMKSLQILRLYACPHLRTLPARI-----CE-LVCLKYLNISQCVSLSC 755 (829)
Q Consensus 705 -----------------------~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-----~~-l~~L~~L~l~~~~~l~~ 755 (829)
....+..+..+++|+.|.+.+|...+...... .. +++|..+.+.+|.....
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 12233345566677777777666543221110 01 22333333333333322
Q ss_pred CccccCCCccccEeeccccccCccCC
Q 003325 756 LPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 756 lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
+ .+..-.++|+.|.+..|..+....
T Consensus 763 l-~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 763 L-TWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred c-chhhccCcccEEEEecccccccCC
Confidence 1 223344667777777766544433
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-40 Score=348.78 Aligned_cols=273 Identities=33% Similarity=0.530 Sum_probs=212.1
Q ss_pred cchhhHHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC
Q 003325 188 MALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS 266 (829)
Q Consensus 188 r~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 266 (829)
|+.++++|.+.|.. +++.++|+|+||||+||||||+++|++..++.+|+ .++|+.++...+...++..|+.++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 67789999999986 37899999999999999999999998777999996 56799999998889999999999976643
Q ss_pred C--CCCCCcchhhHHHHhhcCCcEEEEEcCCCChHhHHHhhhcC----CCceEEEEeeccccc---c-ccceEEccCCCH
Q 003325 267 M--EPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRV----PGCKTLVVSRFKFST---V-LNDTYEVELLRE 336 (829)
Q Consensus 267 ~--~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~----~gs~iivTtR~~~~~---~-~~~~~~l~~L~~ 336 (829)
. ...+.........+.+.++++||||||||+...|+.+.... .|++||||||+..++ . ....|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 12222233344455568889999999999999997776533 489999999999876 2 256899999999
Q ss_pred HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCC-ChhHHHHHHHHhccCCCCccccchhHHHH
Q 003325 337 DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQ-PEMYWTSAKKRLSKGEPICESHENNLLDR 415 (829)
Q Consensus 337 ~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 415 (829)
+||++||++.++..........++.+++|+++|+|+|||++++|++|+.+ +..+|..+++++.............+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876522233345689999999999999999999999654 57889999998876553333346789999
Q ss_pred HHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHH
Q 003325 416 MAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEE 461 (829)
Q Consensus 416 l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~ 461 (829)
+..||+.||++.|.||+|||+||.++.|+.+.|+++|+++|++.+.
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999887653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.4e-19 Score=223.48 Aligned_cols=230 Identities=20% Similarity=0.219 Sum_probs=114.7
Q ss_pred cCCceEEEEEeccCCCccccChhh-hcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccC-CCCCCccccC
Q 003325 563 EFPKAEVLILNFSSTEEYFLPPFI-ENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLK 640 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp~~~-~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~ 640 (829)
.+++|+.|.|..+.. ...+|..+ ..+++|++|++++|......+ ...+++|++|++++|.+. .+|..+..++
T Consensus 91 ~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 91 RLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-----RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccC-----ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 456677766655443 23455443 367777777776665432111 123445555555555544 3444455555
Q ss_pred CCceEEeeeccccccccccc--------------------cccCCccccccccccccccccccCCccccCcCCCcEEEec
Q 003325 641 KMQKISFVLCKINNSLDQSV--------------------VDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVT 700 (829)
Q Consensus 641 ~L~~L~L~~~~~~~~~~~~~--------------------~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 700 (829)
+|++|++++|.+....+..+ +.....+++|+.|++++|...+.+|..++++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 55555555544433222221 1111234444555554444444444445555555555555
Q ss_pred cccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccC
Q 003325 701 NCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSL 780 (829)
Q Consensus 701 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~l 780 (829)
+|.....+|..++++++|+.|++++|...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 54444444445555555555555554444445555555555555555554444445555555555555555555544455
Q ss_pred CcccccccccCceeccch
Q 003325 781 PKSVNSLKSLRQVICEED 798 (829)
Q Consensus 781 p~~l~~l~~L~~L~~~~~ 798 (829)
|..+..+++|+.|++.+|
T Consensus 325 ~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSN 342 (968)
T ss_pred ChhHhcCCCCCEEECcCC
Confidence 555555555555555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=5.2e-19 Score=218.33 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=59.9
Q ss_pred cccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEe
Q 003325 667 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLN 746 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 746 (829)
+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..++.+++|+.|+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 33444444444433333444444444444444444443334444444444444444444444444444444444444444
Q ss_pred ccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003325 747 ISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 747 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
+++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++.+|
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 4444333344444444444444444444444445555555555555555544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.9e-20 Score=194.35 Aligned_cols=245 Identities=22% Similarity=0.296 Sum_probs=187.2
Q ss_pred EEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeec
Q 003325 571 ILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLC 650 (829)
Q Consensus 571 ~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 650 (829)
.|+++.+.....|..+...+++-+|++++|....... +.|.+|..|-+||||+|.+..+|+.+..+.+|++|.|++|
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 4566777788999999999999999999887543321 3467888999999999999999999999999999999988
Q ss_pred cccccccccccccCCccccccccccccccc-cccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCC--
Q 003325 651 KINNSLDQSVVDLPKTLPCLTELTFDHCDD-LMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACP-- 727 (829)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~-- 727 (829)
.+...--..+| .+++|++|.+++... +..+|.++..|.||..+|+|.| .+..+|+.+.++++|+.|+||+|.
T Consensus 184 PL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 184 PLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhHHHHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCcee
Confidence 76543222222 356677777776433 3567777777777777777754 366777777777777777777643
Q ss_pred --------------------cCCcccccccCCCCCCEEeccCCc-CCCCCccccCCCccccEeeccccccCccCCccccc
Q 003325 728 --------------------HLRTLPARICELVCLKYLNISQCV-SLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNS 786 (829)
Q Consensus 728 --------------------~l~~lp~~~~~l~~L~~L~l~~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~ 786 (829)
.+..+|..++++++|+.|.+.+|. ....+|.+|+++.+|+.+...+|. +.-.|+++..
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcR 337 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCR 337 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhh
Confidence 245678888888888888776643 234788899999999999988887 7889999999
Q ss_pred ccccCceeccchhhhhhhhhhhhCCCceEEeccccccc
Q 003325 787 LKSLRQVICEEDVSWAWKDLEKTLPNLHVQVPAKCFSL 824 (829)
Q Consensus 787 l~~L~~L~~~~~~~~~~~~l~~~lp~L~~~~~~~~~~l 824 (829)
|..|+.|.++.|...+.+.-.+-+|.|++.-....++|
T Consensus 338 C~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 99999999999988888887778899988777666654
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=3.3e-17 Score=202.23 Aligned_cols=105 Identities=31% Similarity=0.494 Sum_probs=55.8
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCC-------------------
Q 003325 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSL------------------- 753 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l------------------- 753 (829)
+|+.|++++|..+..+|.+++++++|+.|++++|+.++.+|..+ .+++|+.|++++|..+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 34444444444444455555555555555555555555555443 3445555555544443
Q ss_pred -CCCccccCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003325 754 -SCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 754 -~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
+.+|.++..+++|+.|+|++|+.+..+|..+..+++|+.+++.++
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 345555555666666666666655666655555566655554444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.2e-18 Score=181.34 Aligned_cols=220 Identities=20% Similarity=0.331 Sum_probs=147.7
Q ss_pred EEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccc--cCCCCCCccccCCCceEEe
Q 003325 570 LILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS--ISQLPKSSIPLKKMQKISF 647 (829)
Q Consensus 570 l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--i~~lp~~~~~l~~L~~L~L 647 (829)
|.|+++.+....+|+.+..+.+|++|.+++|...-.... .+..+..|++|.++++. +..+|.++..|.||+.+++
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh---cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 467788888889999999999999999988864433222 23455666667776664 3356777777777777777
Q ss_pred eeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCC
Q 003325 648 VLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACP 727 (829)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 727 (829)
+.|.+.. .|+....+++|+.|+|++| .++++.-.++...+|++|++|.|. +..+|..+++|++|+.|.+.+|.
T Consensus 230 S~N~Lp~-----vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 230 SENNLPI-----VPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred cccCCCc-----chHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc
Confidence 7665432 2222344667777777776 455565556666777777777754 66677777777777777666543
Q ss_pred c-CCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003325 728 H-LRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 728 ~-l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
. .+-+|++|+++..|+.++.++ +.++-.|++++.|..|+.|.|+.|. +-.+|+.+.-|+.|+.|++.+|..+
T Consensus 303 L~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCc
Confidence 2 245677777777777777665 4666677777777777777777776 5667777777777777777666443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-17 Score=172.34 Aligned_cols=247 Identities=17% Similarity=0.181 Sum_probs=160.6
Q ss_pred cceEEEeeeCCccccccccccCCceE-EEEEeccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccc
Q 003325 543 NAQIVSIHTGDMREMDWFRMEFPKAE-VLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLR 620 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~-~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~ 620 (829)
++.++-+....+..+.-- .|..+- .+.|.++.+....+| ..|+++++|+.|+|..|...-. ....|.+|+.|+
T Consensus 174 ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv---e~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV---EGLTFQGLPSLQ 248 (873)
T ss_pred CceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee---hhhhhcCchhhh
Confidence 455666655555444321 122222 236667777788888 5577899999999987764321 234577889999
Q ss_pred eeeecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEe
Q 003325 621 SLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSV 699 (829)
Q Consensus 621 ~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 699 (829)
.|.|..|.+..+-++ |..|.++++|+|..|++...-.+.+ .+++.|+.|+|++|..-...+++....++|+.|+|
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l----fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL----FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc----cccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 999999999988887 7789999999999888765443333 45888889999888766666778888888999999
Q ss_pred ccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCC---ccccCCCccccEeecccccc
Q 003325 700 TNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCL---PQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 700 ~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l---p~~l~~l~~L~~L~l~~~~~ 776 (829)
+.|....--+.++..|..|++|+|++|...-.-...|..+.+|+.|+|++|..-..+ ...+..|++|+.|.+.||.
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq- 403 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ- 403 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-
Confidence 887643333466777777777777774432211223455666666666665432211 1224556666666666665
Q ss_pred CccCCc-ccccccccCceeccchh
Q 003325 777 IWSLPK-SVNSLKSLRQVICEEDV 799 (829)
Q Consensus 777 ~~~lp~-~l~~l~~L~~L~~~~~~ 799 (829)
++.+|. .+..+++|+.|++.+|.
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred eeecchhhhccCcccceecCCCCc
Confidence 455552 45556666666665553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=5.5e-16 Score=162.68 Aligned_cols=253 Identities=20% Similarity=0.176 Sum_probs=163.5
Q ss_pred cCCCCcceEEEeeeCCccccccc-cccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCc
Q 003325 538 VDQPFNAQIVSIHTGDMREMDWF-RMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNL 616 (829)
Q Consensus 538 ~~~~~~~~~lsi~~~~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l 616 (829)
...|..++.+-+++..+.+.+.. -.++|+|+.+.++.+ ....+|.......+|+.|+|.+|....... ..++.+
T Consensus 74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L~~l 148 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFGHESGHLEKLDLRHNLISSVTS---EELSAL 148 (873)
T ss_pred CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhcccccccccceeEEeeeccccccccH---HHHHhH
Confidence 34566788888888887777653 367889988877554 467889877777789999999886554332 346778
Q ss_pred cccceeeecccccCCCCCC-ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCC-ccccCcCCC
Q 003325 617 TNLRSLWLEKVSISQLPKS-SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PSICGLQSL 694 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~i~~l~~L 694 (829)
+-|+.|||+.|.|+.+|.. +..-.++++|+|+.|.+...-.+.+ ..+.+|..|.|+.|. ++.+| ..|.+|++|
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F----~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF----DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc----cccchheeeecccCc-ccccCHHHhhhcchh
Confidence 8999999999999988876 4445789999999998876555544 346678888888874 55555 455668888
Q ss_pred cEEEeccccccccchhhccCCCCCCEEecccCCc------------------------CCcccccccCCCCCCEEeccCC
Q 003325 695 KNLSVTNCHSLQELPADIGKMKSLQILRLYACPH------------------------LRTLPARICELVCLKYLNISQC 750 (829)
Q Consensus 695 ~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~------------------------l~~lp~~~~~l~~L~~L~l~~~ 750 (829)
+.|+|..|..-..-.-.|.+|++|+.|.+..|.. ...-..++..+++|+.|++|+|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 8888877653211123344555555555544332 2222223445566666666665
Q ss_pred cCCCCCccccCCCccccEeeccccccCccCC-cccccccccCceeccchhhh
Q 003325 751 VSLSCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 751 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~~~ 801 (829)
..-.--+++....++|+.|+|++|. +..++ ..+..|..|+.|.++.|...
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred hhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchH
Confidence 4333334445556666666666666 33333 34555666666666655433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=4e-17 Score=163.94 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=115.5
Q ss_pred ccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeecccc
Q 003325 574 FSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKIN 653 (829)
Q Consensus 574 ~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 653 (829)
.+.+....+|++++.+.++..|++++|..+. .+.....+..|+.|++++|.+..+|++++.+..|..|+..+|++.
T Consensus 75 ~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~ 150 (565)
T KOG0472|consen 75 VHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS 150 (565)
T ss_pred eccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc
Confidence 3344445555555555555555555443221 112334444455555555555555555555545554444444433
Q ss_pred ccccccc------------------cccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCC
Q 003325 654 NSLDQSV------------------VDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKM 715 (829)
Q Consensus 654 ~~~~~~~------------------~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 715 (829)
...+... +...-+++.|++|+..+| .++.+|+.++.|.+|..|++..|. +..+| .|+++
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gc 227 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGC 227 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCcc
Confidence 2111110 000012455566655554 455566666666666666666543 44455 55566
Q ss_pred CCCCEEecccCCcCCccccccc-CCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCcee
Q 003325 716 KSLQILRLYACPHLRTLPARIC-ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVI 794 (829)
Q Consensus 716 ~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 794 (829)
..|.+|.++. +.++.+|..++ .+++|..||+.. +.+++.|+.+..+.+|+.|++++|. ++.+|..++++ .|+.|.
T Consensus 228 s~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 228 SLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehh
Confidence 6666665544 44555665544 666666677666 3566666666666667777777666 56666666666 666666
Q ss_pred ccchhhh
Q 003325 795 CEEDVSW 801 (829)
Q Consensus 795 ~~~~~~~ 801 (829)
+.+|...
T Consensus 304 leGNPlr 310 (565)
T KOG0472|consen 304 LEGNPLR 310 (565)
T ss_pred hcCCchH
Confidence 6666433
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-16 Score=140.76 Aligned_cols=164 Identities=26% Similarity=0.381 Sum_probs=93.3
Q ss_pred CccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCC
Q 003325 615 NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSL 694 (829)
Q Consensus 615 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L 694 (829)
++.++..|.+++|.++.+|+.+..+.+|+.|+++.|++.. ++.+ .+.+++|+.|++.-| .+..+|.+|+.++.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~----issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTS----ISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChh----hhhchhhhheecchh-hhhcCccccCCCchh
Confidence 3444455555555555555555555555555555554432 1111 123555555555544 345566666666666
Q ss_pred cEEEecccccc-ccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccc
Q 003325 695 KNLSVTNCHSL-QELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRE 773 (829)
Q Consensus 695 ~~L~l~~~~~~-~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 773 (829)
+.||++.|+.. ..+|..|..+..|+-|.+++ +..+.+|..++++++|+.|.+..|. +-.+|..++.++.|+.|.+.|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc
Confidence 66666665432 23565555666666666666 3455666666666666666666643 335666666666777777776
Q ss_pred cccCccCCcccccc
Q 003325 774 CSQIWSLPKSVNSL 787 (829)
Q Consensus 774 ~~~~~~lp~~l~~l 787 (829)
|. +.-+|..++++
T Consensus 183 nr-l~vlppel~~l 195 (264)
T KOG0617|consen 183 NR-LTVLPPELANL 195 (264)
T ss_pred ce-eeecChhhhhh
Confidence 66 55666555543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=5e-16 Score=156.16 Aligned_cols=198 Identities=27% Similarity=0.358 Sum_probs=159.0
Q ss_pred EEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeec
Q 003325 571 ILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLC 650 (829)
Q Consensus 571 ~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 650 (829)
.++.+.++...+|+.++.+..|..|+..+|... ..+..+.++..|..|++.+|.++.+|+..-.|+.|++|+...|
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~----slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS----SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccc----cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 455566667777777888877777777665432 2234466778888899999999998888777999999998776
Q ss_pred cccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhcc-CCCCCCEEecccCCcC
Q 003325 651 KINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHL 729 (829)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~l 729 (829)
.+. .+|...+.+.+|.-|+|+.| .+..+| .|.++..|..|.++.|. ++.+|...+ +|++|-.|++.+ +.+
T Consensus 194 ~L~-----tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRd-Nkl 264 (565)
T KOG0472|consen 194 LLE-----TLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRD-NKL 264 (565)
T ss_pred hhh-----cCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccc-ccc
Confidence 543 23333466889999999998 577888 69999999999999865 788887665 999999999999 678
Q ss_pred CcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCccc
Q 003325 730 RTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSV 784 (829)
Q Consensus 730 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l 784 (829)
+++|..++.+.+|++||+|+| .++.+|..++++ .|+.|-+.||+ +..+...+
T Consensus 265 ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~i 316 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREI 316 (565)
T ss_pred ccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHH
Confidence 999999999999999999984 678999999999 89999999999 56555443
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=3.6e-12 Score=156.79 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=180.6
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCCCC---
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDSME--- 268 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~--- 268 (829)
.++.+.|......+++.|.|++|.||||++..+.. .++ .+.|+++.. ..++..+...++..+.......
T Consensus 20 ~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~------~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~ 92 (903)
T PRK04841 20 ERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA------GKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSK 92 (903)
T ss_pred hHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH------hCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccch
Confidence 46777776556789999999999999999999884 233 356999964 4466666667766664221110
Q ss_pred C------C--CC-cchhhHHHHhh--cCCcEEEEEcCCCCh------HhHHHhhhcCC-CceEEEEeeccccc------c
Q 003325 269 P------N--YV-IPHWNLQIQSK--LGSRCLVVLDDVWSL------AVLEQLIFRVP-GCKTLVVSRFKFST------V 324 (829)
Q Consensus 269 ~------~--~~-~~~~~~~~~~~--~~~~~LlVlDdv~~~------~~~~~l~~~~~-gs~iivTtR~~~~~------~ 324 (829)
. . .. ...+...+..+ .+.+++|||||++.. +.+..+....| +.++|||||..... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~ 172 (903)
T PRK04841 93 SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRV 172 (903)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHh
Confidence 0 0 00 11122223333 268999999999853 24555555555 56888999985432 1
Q ss_pred ccceEEcc----CCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhcc
Q 003325 325 LNDTYEVE----LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSK 400 (829)
Q Consensus 325 ~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~ 400 (829)
.....++. +|+.+|+.++|....... ..++...+|.+.|+|+|+++..++..++..... .......+..
T Consensus 173 ~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~ 245 (903)
T PRK04841 173 RDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAG 245 (903)
T ss_pred cCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcC
Confidence 23355666 899999999997654221 124577899999999999999998877644211 0111111110
Q ss_pred CCCCccccchhHHHHHH-HhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhhhh
Q 003325 401 GEPICESHENNLLDRMA-ISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIV 479 (829)
Q Consensus 401 ~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~~ 479 (829)
.....+...+. -.++.||+..+.++...|+++ .|+.+.+-.. .....+...+.+|.+.+++...
T Consensus 246 ------~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 246 ------INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGEENGQMRLEELERQGLFIQR 310 (903)
T ss_pred ------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCCCcHHHHHHHHHHCCCeeEe
Confidence 01234555543 348899999999999999986 3443322211 2233457789999999986432
Q ss_pred hhcccCccccccccccchhhHHHHHHHHHhhccCC
Q 003325 480 KDARAGDMYSSYYEISVTQHDVLRDLALHLSNQEN 514 (829)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~~ 514 (829)
.++. + ..|..|++++++.+.....+.
T Consensus 311 ~~~~-~--------~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 311 MDDS-G--------EWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred ecCC-C--------CEEehhHHHHHHHHHHHHhcC
Confidence 1111 1 146789999999998764443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-15 Score=135.34 Aligned_cols=166 Identities=27% Similarity=0.369 Sum_probs=122.3
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCC
Q 003325 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPK 665 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 665 (829)
+.+|+++..|.+++|..... .+.+..+.+|++|++++|.++.+|.++..+++|+.|++.-|.+.. .+..++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v----ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~-----lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV----PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI-----LPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccCceeec----CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-----CccccC
Confidence 44566777777777654322 234667778888888888888888888888888888887666542 334456
Q ss_pred cccccccccccccccc-ccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCE
Q 003325 666 TLPCLTELTFDHCDDL-MKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKY 744 (829)
Q Consensus 666 ~~~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 744 (829)
.+|.|+.|+|.+|+.- ..+|..|..|+.|+-|.+++|. ...+|+.+++|++||.|.+.+| .+-++|..++.++.|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHH
Confidence 6888888888877533 3578888888888888888865 5778888888889998888884 45568888888888999
Q ss_pred EeccCCcCCCCCccccCCC
Q 003325 745 LNISQCVSLSCLPQGIGNL 763 (829)
Q Consensus 745 L~l~~~~~l~~lp~~l~~l 763 (829)
|++.+ +.+..+|+.++.+
T Consensus 178 lhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 178 LHIQG-NRLTVLPPELANL 195 (264)
T ss_pred Hhccc-ceeeecChhhhhh
Confidence 98888 4677787766544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.8e-12 Score=148.30 Aligned_cols=224 Identities=19% Similarity=0.244 Sum_probs=150.5
Q ss_pred cceEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCcccccee
Q 003325 543 NAQIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSL 622 (829)
Q Consensus 543 ~~~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L 622 (829)
..+.+.+....+..++.. .+++|+.|.|..+ ....+|..+. ++|+.|++.+|...... . .+ ..+|+.|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N--~LtsLP~~l~--~~L~~L~Ls~N~L~~LP-~---~l--~s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELKSLPEN--LQGNIKTLYANSN--QLTSIPATLP--DTIQEMELSINRITELP-E---RL--PSALQSL 267 (754)
T ss_pred CCcEEEecCCCCCcCChh--hccCCCEEECCCC--ccccCChhhh--ccccEEECcCCccCcCC-h---hH--hCCCCEE
Confidence 456666666666554421 2356777766543 3456676543 46888888777644221 1 11 2468888
Q ss_pred eecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccc
Q 003325 623 WLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC 702 (829)
Q Consensus 623 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 702 (829)
++++|.++.+|..+. .+|+.|++++|++.. ++..+ .++|+.|++++|. +..+|..+ .++|+.|++++|
T Consensus 268 ~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------p~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N 335 (754)
T PRK15370 268 DLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHL------PSGITHLNVQSNS-LTALPETL--PPGLKTLEAGEN 335 (754)
T ss_pred ECcCCccCccccccC--CCCcEEECCCCcccc-Ccccc------hhhHHHHHhcCCc-cccCCccc--cccceeccccCC
Confidence 888888888887654 478888888887653 22111 3468888888874 55666544 368899999887
Q ss_pred cccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCc
Q 003325 703 HSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPK 782 (829)
Q Consensus 703 ~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 782 (829)
. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|+|++| .+..+|..+. .+|+.|++++|. +..+|.
T Consensus 336 ~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 336 A-LTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred c-cccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 6 566776654 689999999865 556776553 68999999986 4667887654 468899999988 567776
Q ss_pred cccc----ccccCceeccchhh
Q 003325 783 SVNS----LKSLRQVICEEDVS 800 (829)
Q Consensus 783 ~l~~----l~~L~~L~~~~~~~ 800 (829)
.+.+ ++++..+++.+|..
T Consensus 406 sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCCc
Confidence 5544 46777888877743
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4.1e-12 Score=146.93 Aligned_cols=202 Identities=19% Similarity=0.290 Sum_probs=124.2
Q ss_pred ceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceE
Q 003325 566 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKI 645 (829)
Q Consensus 566 ~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 645 (829)
.++.|.|..+ ....+|..+. ++|++|++.+|...... . . -..+|+.|++++|.+..+|..+. .+|+.|
T Consensus 200 ~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP-~---~--l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLILDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIP-A---T--LPDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEecCC--CCCcCChhhc--cCCCEEECCCCccccCC-h---h--hhccccEEECcCCccCcCChhHh--CCCCEE
Confidence 4555555433 3556666543 47888887776543221 1 1 12367778888888777776653 467788
Q ss_pred EeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEeccc
Q 003325 646 SFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYA 725 (829)
Q Consensus 646 ~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 725 (829)
++++|++.. ++..+ +++|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++
T Consensus 268 ~Ls~N~L~~-LP~~l------~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~ 334 (754)
T PRK15370 268 DLFHNKISC-LPENL------PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAGE 334 (754)
T ss_pred ECcCCccCc-ccccc------CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccccC
Confidence 887766552 22221 246788888777 4555665442 467777787765 445664442 5777777777
Q ss_pred CCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003325 726 CPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 726 ~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
|. +..+|..+. ++|+.|++++| .+..+|..+. ++|+.|+|++|. +..+|..+. .+|+.|++++|...
T Consensus 335 N~-Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 335 NA-LTSLPASLP--PELQVLDVSKN-QITVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred Cc-cccCChhhc--CcccEEECCCC-CCCcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcc
Confidence 54 445666553 67888888776 3556666543 577888888877 556776553 35667776666443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=1.6e-11 Score=141.10 Aligned_cols=222 Identities=21% Similarity=0.160 Sum_probs=121.5
Q ss_pred eEEEeeeCCccccccccccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCccc----------C
Q 003325 545 QIVSIHTGDMREMDWFRMEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVC----------S 614 (829)
Q Consensus 545 ~~lsi~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l----------~ 614 (829)
..+.+....+..++-.. .++++.|.+.. +....+|. ..++|++|++.+|...... ..++.+ .
T Consensus 204 ~~LdLs~~~LtsLP~~l--~~~L~~L~L~~--N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL--PAHITTLVIPD--NNLTSLPA---LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcch--hcCCCEEEccC--CcCCCCCC---CCCCCcEEEecCCccCccc-CcccccceeeccCCchh
Confidence 34555555555443211 23566666554 44566775 3578999999988654321 111000 0
Q ss_pred ----CccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccC
Q 003325 615 ----NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICG 690 (829)
Q Consensus 615 ----~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~ 690 (829)
-+.+|+.|++++|.++.+|.. +++|+.|++++|++... +. ...+|+.|++++| .+..+|. .
T Consensus 276 ~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~L-p~-------lp~~L~~L~Ls~N-~L~~LP~---l 340 (788)
T PRK15387 276 HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PA-------LPSELCKLWAYNN-QLTSLPT---L 340 (788)
T ss_pred hhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccC-CC-------CcccccccccccC-ccccccc---c
Confidence 112455555555555555542 35677777777765431 11 0122333333333 1222322 0
Q ss_pred cCCCcEEEeccccc-------------------cccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCc
Q 003325 691 LQSLKNLSVTNCHS-------------------LQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCV 751 (829)
Q Consensus 691 l~~L~~L~l~~~~~-------------------~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 751 (829)
..+|+.|+|++|.. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc
Confidence 12444555554331 2233321 2356777777653 4456543 3567788888754
Q ss_pred CCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhh
Q 003325 752 SLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 752 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~ 801 (829)
+..+|.. ..+|+.|++++|. +..+|..+.++++|..|++++|...
T Consensus 414 -LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 414 -LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 5567653 3467788888888 6788988888999999998888543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=1.9e-13 Score=151.67 Aligned_cols=213 Identities=21% Similarity=0.220 Sum_probs=130.3
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccc
Q 003325 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQ 658 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~ 658 (829)
...+|..+..+.+|..|.+.+|.... .+..+.....|++|....|.++.+|+...++++|++|+|..|++....+.
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRLVA----LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred hhcchHHHHhcccceEecccchhHHh----hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchH
Confidence 45556666666666666665554311 11223344444555555555555544444445555555544443221110
Q ss_pred cc---------------------cccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccch-hhccCCC
Q 003325 659 SV---------------------VDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP-ADIGKMK 716 (829)
Q Consensus 659 ~~---------------------~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~ 716 (829)
.+ ......++.|+.|.+.+|......-+.+.++.+|+.|+|++|+ +..+| ..+.+|.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle 407 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLE 407 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchH
Confidence 00 0001235667777887776554444457788888888888865 56666 4567888
Q ss_pred CCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCc-cCCcccccccccCceec
Q 003325 717 SLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW-SLPKSVNSLKSLRQVIC 795 (829)
Q Consensus 717 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~~ 795 (829)
.|++|+||| +.++.+|..+..+++|++|...+ +.+..+| .+..++.|+.+|++.|.+.. .+|..... ++|++|++
T Consensus 408 ~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdl 483 (1081)
T KOG0618|consen 408 ELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDL 483 (1081)
T ss_pred HhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeec
Confidence 888888888 56777888888888888887766 4666787 57888888888888877432 34443333 78888888
Q ss_pred cchhh
Q 003325 796 EEDVS 800 (829)
Q Consensus 796 ~~~~~ 800 (829)
++|+.
T Consensus 484 SGN~~ 488 (1081)
T KOG0618|consen 484 SGNTR 488 (1081)
T ss_pred cCCcc
Confidence 88864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=4.6e-13 Score=143.67 Aligned_cols=239 Identities=16% Similarity=0.099 Sum_probs=147.7
Q ss_pred CCceEEEEEeccCCC---ccccChhhhcCCCCceEEEccccCCc--cccCC-CcccCCccccceeeecccccCC-CCCCc
Q 003325 564 FPKAEVLILNFSSTE---EYFLPPFIENMEKLRALIVINYSTSN--AALGN-FSVCSNLTNLRSLWLEKVSISQ-LPKSS 636 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~---~~~lp~~~~~l~~Lr~L~l~~~~~~~--~~~~~-~~~l~~l~~L~~L~l~~~~i~~-lp~~~ 636 (829)
+++++.+.+..+... ...++..+...++|+.|++.++.... ..... ...+..+++|+.|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344666666655431 12355667777788888887765431 11110 1235567788888888888763 33334
Q ss_pred cccC---CCceEEeeeccccccccccccccCCcc-ccccccccccccccc----cCCccccCcCCCcEEEeccccccc--
Q 003325 637 IPLK---KMQKISFVLCKINNSLDQSVVDLPKTL-PCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQ-- 706 (829)
Q Consensus 637 ~~l~---~L~~L~L~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~-- 706 (829)
..+. +|++|++++|.+.......+......+ ++|+.|++++|.... .++..+..+++|++|++++|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 4444 488888888876532222222222334 788888988886442 344456677889999998876442
Q ss_pred --cchhhccCCCCCCEEecccCCcCC----cccccccCCCCCCEEeccCCcCCCC----Ccccc-CCCccccEeeccccc
Q 003325 707 --ELPADIGKMKSLQILRLYACPHLR----TLPARICELVCLKYLNISQCVSLSC----LPQGI-GNLIRLEKIDMRECS 775 (829)
Q Consensus 707 --~lp~~l~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~l~~----lp~~l-~~l~~L~~L~l~~~~ 775 (829)
.++..+..+++|+.|++++|.... .++..+..+++|++|++++|..... +...+ ...+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 344456667789999998876432 3444566778899999988754321 11111 124788999999887
Q ss_pred cC----ccCCcccccccccCceeccchhhhh
Q 003325 776 QI----WSLPKSVNSLKSLRQVICEEDVSWA 802 (829)
Q Consensus 776 ~~----~~lp~~l~~l~~L~~L~~~~~~~~~ 802 (829)
+. ..++..+..+++|+.+++++|....
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 43 2344556667888888888775443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.3e-12 Score=140.12 Aligned_cols=239 Identities=13% Similarity=0.051 Sum_probs=161.7
Q ss_pred ccChhhhcCCCCceEEEccccCCccccCCC-cccCCccccceeeecccccCC-------CCCCccccCCCceEEeeeccc
Q 003325 581 FLPPFIENMEKLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVSISQ-------LPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 581 ~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~L~~~~~ 652 (829)
..+..+..+.+|+.|++.++.........+ ..+...++|+.|+++++.+.. ++..+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 344567788889999999987644322222 235567789999999987763 233456688999999999887
Q ss_pred cccccccccccCCccccccccccccccccc----cCCccccCc-CCCcEEEeccccccc----cchhhccCCCCCCEEec
Q 003325 653 NNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGL-QSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRL 723 (829)
Q Consensus 653 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l 723 (829)
.......+...... ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++
T Consensus 94 ~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 94 GPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred ChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 65444443333334 669999999986442 233456667 899999999998552 34556778889999999
Q ss_pred ccCCcCC----cccccccCCCCCCEEeccCCcCCC----CCccccCCCccccEeeccccccCccCCcccc-----ccccc
Q 003325 724 YACPHLR----TLPARICELVCLKYLNISQCVSLS----CLPQGIGNLIRLEKIDMRECSQIWSLPKSVN-----SLKSL 790 (829)
Q Consensus 724 ~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~-----~l~~L 790 (829)
++|.... .++..+..+++|++|++++|.... .++..+..+++|++|++++|.....-+..+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 9987553 344556667899999999985432 3445567889999999999984431111221 23789
Q ss_pred Cceeccchhhh--hhh---hhhhhCCCceEEeccc
Q 003325 791 RQVICEEDVSW--AWK---DLEKTLPNLHVQVPAK 820 (829)
Q Consensus 791 ~~L~~~~~~~~--~~~---~l~~~lp~L~~~~~~~ 820 (829)
+.|++.+|... ... .....+|+|+......
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 99998877543 222 2333456666654443
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.22 E-value=3.2e-09 Score=117.14 Aligned_cols=286 Identities=10% Similarity=0.034 Sum_probs=168.1
Q ss_pred CcccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 181 GNLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
.+..++||+.+++++...+.. +.....+.|+|++|+|||++++.++++...... ...+++++.....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~-~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV-KVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEECCcCCCHHHHHHHH
Confidence 356789999999999999843 234566889999999999999999964322221 1234467666677788888999
Q ss_pred HHhhcCCCCCCCCCCc-chhhHHHHhh--cCCcEEEEEcCCCChH------hHHHhhh---cCCCce--EEEEeeccccc
Q 003325 258 WGFVSGCDSMEPNYVI-PHWNLQIQSK--LGSRCLVVLDDVWSLA------VLEQLIF---RVPGCK--TLVVSRFKFST 323 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~~~~LlVlDdv~~~~------~~~~l~~---~~~gs~--iivTtR~~~~~ 323 (829)
+.++.+.......... +.+....+.+ .++.++||||+++... .+..+.. ..++++ +|.++......
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988653221111111 1222223333 3567899999998642 3333332 234444 55555544321
Q ss_pred ----------cccceEEccCCCHHHHHHHHHHhhcC---CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhc-----C
Q 003325 324 ----------VLNDTYEVELLREDESLSLFCYSAFG---QKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR-----E 385 (829)
Q Consensus 324 ----------~~~~~~~l~~L~~~e~~~Lf~~~a~~---~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~-----~ 385 (829)
.....+.+++++.++..+++...+-. .....+...+.+++......|..+.|+.++-.... +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 11346789999999999999877632 22222222232333333334557778777644321 1
Q ss_pred C---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCC--CCccCHHHHHHHHH--H-hcC
Q 003325 386 Q---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPE--DKKIPLEVLINMWV--E-IHD 457 (829)
Q Consensus 386 ~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~--~~~i~~~~l~~~w~--a-~~~ 457 (829)
. +......+..... .....-.+..||.+.|..+..++..-+ ...+....+..... + .-+
T Consensus 267 ~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 2344444444321 223455688999999888776654321 13355555543321 1 122
Q ss_pred C---CHHHHHHHHHHHhhcchhhhhh
Q 003325 458 L---DEEEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 458 ~---~~~~~~~~l~~L~~~sli~~~~ 480 (829)
. .......+++.|.+.++|....
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEEE
Confidence 3 2356677899999999987643
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=4.3e-11 Score=137.59 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=100.1
Q ss_pred cccceeeecccccCCCCCCccc-----------------cCCCceEEeeeccccccccccccccCCcccccccccccccc
Q 003325 617 TNLRSLWLEKVSISQLPKSSIP-----------------LKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCD 679 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~~~~~-----------------l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 679 (829)
++|+.|++++|.++.+|..... ..+|+.|+|++|++.. + + ...++|+.|++++|.
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-L----P---~lp~~L~~L~Ls~N~ 373 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-L----P---TLPSELYKLWAYNNR 373 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-C----C---CCCcccceehhhccc
Confidence 4566667766666665542111 1256666666655442 1 1 123456667776653
Q ss_pred ccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccc
Q 003325 680 DLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQG 759 (829)
Q Consensus 680 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 759 (829)
+..+|.. +.+|+.|++++|. +..+|.. .++|+.|++++|. +..+|.. ..+|+.|++++| .+..+|..
T Consensus 374 -L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~N-qLt~LP~s 440 (788)
T PRK15387 374 -LTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRN-QLTRLPES 440 (788)
T ss_pred -cccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccC-cccccChH
Confidence 4456643 3579999999986 5567753 3689999999965 5668864 356889999985 56789999
Q ss_pred cCCCccccEeeccccccCccCCccc
Q 003325 760 IGNLIRLEKIDMRECSQIWSLPKSV 784 (829)
Q Consensus 760 l~~l~~L~~L~l~~~~~~~~lp~~l 784 (829)
+..+++|+.|+|++|++.+..|..+
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred HhhccCCCeEECCCCCCCchHHHHH
Confidence 9999999999999999776666544
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-12 Score=145.71 Aligned_cols=218 Identities=22% Similarity=0.250 Sum_probs=152.8
Q ss_pred CCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCcccc
Q 003325 590 EKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 669 (829)
Q Consensus 590 ~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 669 (829)
.+|.+++++++.+.+.. .+.+.+.+|+.++..+|.+..+|..+....+|+.|.+..|.+.... .....+.+
T Consensus 241 ~nl~~~dis~n~l~~lp----~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip-----~~le~~~s 311 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP----EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP-----PFLEGLKS 311 (1081)
T ss_pred ccceeeecchhhhhcch----HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC-----Ccccccce
Confidence 48999999888765433 4578899999999999999999999999999999999998876432 22345889
Q ss_pred ccccccccccccccCCccccC--------------------------cCCCcEEEeccccccccchhhccCCCCCCEEec
Q 003325 670 LTELTFDHCDDLMKLPPSICG--------------------------LQSLKNLSVTNCHSLQELPADIGKMKSLQILRL 723 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp~~i~~--------------------------l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 723 (829)
|++|+|..| .+..+|+.+-. +..|+.|.+.+|......-+.+.+.++|+.|+|
T Consensus 312 L~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 999999987 45556553211 233555566665554444456667778888888
Q ss_pred ccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCceeccchhhhh
Q 003325 724 YACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEEDVSWA 802 (829)
Q Consensus 724 ~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~~~~~ 802 (829)
++ +.++.+|.. +.++..|++|+||+ +.+..+|+.+..+..|++|...+|. +..+| .+..++.|+.+|++.|....
T Consensus 391 sy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 391 SY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhh
Confidence 87 456666653 56777788888888 4677788777788888888777776 67777 67778888888876653222
Q ss_pred hhhhhhhC--CCceEEeccccc
Q 003325 803 WKDLEKTL--PNLHVQVPAKCF 822 (829)
Q Consensus 803 ~~~l~~~l--p~L~~~~~~~~~ 822 (829)
.. +.... |+|+....++..
T Consensus 467 ~~-l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VT-LPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hh-hhhhCCCcccceeeccCCc
Confidence 11 11112 566666555543
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.5e-08 Score=110.55 Aligned_cols=285 Identities=14% Similarity=0.103 Sum_probs=165.9
Q ss_pred cccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhccccc-cc--cCCeEEEEEeCCCCCHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVT-SY--FNNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~~~~~wv~v~~~~~~~~l~~ 255 (829)
+..++||+.++++|...+.. +.....+.|+|++|+|||++++.++++-.-. .. ....++|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45689999999999999864 3445678999999999999999999642110 11 112345777777777888899
Q ss_pred HHHHhhcC--CCCCCCC-CCcchhhHHHHhh--cCCcEEEEEcCCCCh-----HhHHHhhh-----cCCCc--eEEEEee
Q 003325 256 KVWGFVSG--CDSMEPN-YVIPHWNLQIQSK--LGSRCLVVLDDVWSL-----AVLEQLIF-----RVPGC--KTLVVSR 318 (829)
Q Consensus 256 ~i~~~l~~--~~~~~~~-~~~~~~~~~~~~~--~~~~~LlVlDdv~~~-----~~~~~l~~-----~~~gs--~iivTtR 318 (829)
.++.++.. ....... +..+.+......+ .+++++||||+++.. +.+..+.. ..+++ .+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988852 1111111 1111122333333 466899999999865 11223222 12222 3444443
Q ss_pred cccc-c---------cccceEEccCCCHHHHHHHHHHhhc---CCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHHHh-
Q 003325 319 FKFS-T---------VLNDTYEVELLREDESLSLFCYSAF---GQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGASL- 383 (829)
Q Consensus 319 ~~~~-~---------~~~~~~~l~~L~~~e~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l- 383 (829)
.... . .....+.+++.+.++..+++...+- ......+. ..+.+.+++....|.|- |+.++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG-VIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3321 1 1124688999999999999988763 11111111 12245556667778874 334332211
Q ss_pred ---c-CC---ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCC--CCCccCHHHHHHHHH-
Q 003325 384 ---R-EQ---PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFP--EDKKIPLEVLINMWV- 453 (829)
Q Consensus 384 ---~-~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~~~~l~~~w~- 453 (829)
. +. +.+....+...+ -.....-++..||.+.+..+..++..- .+..+....+...+.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~-------------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI-------------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 123333333332 122334567899999887776655321 334466666666332
Q ss_pred --HhcC---CCHHHHHHHHHHHhhcchhhhhh
Q 003325 454 --EIHD---LDEEEAFAILVELSDRNLLKIVK 480 (829)
Q Consensus 454 --a~~~---~~~~~~~~~l~~L~~~sli~~~~ 480 (829)
...+ ........++..|...|+|....
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2222 34567788899999999998654
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.11 E-value=5.7e-09 Score=116.57 Aligned_cols=284 Identities=17% Similarity=0.216 Sum_probs=187.3
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCCCCCC
Q 003325 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEPN 270 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~ 270 (829)
+.++.+.|....+.+.+.|..|+|.|||||+..++. ..... ..+.|.+.+.. .++..+...++..+.........
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~~~~~--~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--LAADG--AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--hcCcc--cceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 367888888778999999999999999999999984 33333 24569998764 56777888888777633221111
Q ss_pred CCc------------chhhHHHHhh--cCCcEEEEEcCCCCh------HhHHHhhhcCC-CceEEEEeeccccc------
Q 003325 271 YVI------------PHWNLQIQSK--LGSRCLVVLDDVWSL------AVLEQLIFRVP-GCKTLVVSRFKFST------ 323 (829)
Q Consensus 271 ~~~------------~~~~~~~~~~--~~~~~LlVlDdv~~~------~~~~~l~~~~~-gs~iivTtR~~~~~------ 323 (829)
+.. .-+...+..+ -.++..|||||.+-. +.++-+....| +-..|||||+....
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 100 0112222222 356899999998732 34566666555 78999999999754
Q ss_pred cccceEEccC----CCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCC-hhHHHHHHHHh
Q 003325 324 VLNDTYEVEL----LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP-EMYWTSAKKRL 398 (829)
Q Consensus 324 ~~~~~~~l~~----L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~~w~~~l~~l 398 (829)
..+...+++. ++.+|+-++|.....- ...+..++.+.+..+|.+-|+..++-.+++++ ...-- ..+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~---~~L 250 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSL---RGL 250 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh---hhc
Confidence 2234455544 8999999999876411 12244688999999999999999998888432 22111 111
Q ss_pred ccCCCCccccchhHHHH-HHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhh
Q 003325 399 SKGEPICESHENNLLDR-MAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLK 477 (829)
Q Consensus 399 ~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~ 477 (829)
.. . ..-+.+- ..=-++.||+++|..++-+|+++. |. ..|+... ..++.+...+++|..++++-
T Consensus 251 sG------~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L-----tg~~ng~amLe~L~~~gLFl 314 (894)
T COG2909 251 SG------A-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL-----TGEENGQAMLEELERRGLFL 314 (894)
T ss_pred cc------h-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH-----hcCCcHHHHHHHHHhCCCce
Confidence 00 0 1112222 234578999999999999999864 11 3344331 23446777899999999875
Q ss_pred hhhhcccCccccccccccchhhHHHHHHHHHhhccC
Q 003325 478 IVKDARAGDMYSSYYEISVTQHDVLRDLALHLSNQE 513 (829)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~~ 513 (829)
..-++.. ..|+.|.++.||-+...+.+
T Consensus 315 ~~Ldd~~---------~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 315 QRLDDEG---------QWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eeecCCC---------ceeehhHHHHHHHHhhhccc
Confidence 4333221 26899999999998877664
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=7e-12 Score=126.59 Aligned_cols=217 Identities=19% Similarity=0.204 Sum_probs=142.1
Q ss_pred eccCCCccccC-hhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecc-cccCCCCCC-ccccCCCceEEeee
Q 003325 573 NFSSTEEYFLP-PFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEK-VSISQLPKS-SIPLKKMQKISFVL 649 (829)
Q Consensus 573 ~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~L~~ 649 (829)
.+..+.+..+| .+|+.+++||.|+|++|........ .|.+++.|-.|-+.+ |.|+.+|.. |..|..|+.|.+.-
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~---AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD---AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChH---hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 33444466776 6699999999999999986655443 456666666665544 899999887 77788888888776
Q ss_pred ccccccccccccccCCccccccccccccccccccCCc-cccCcCCCcEEEecccc-------------------------
Q 003325 650 CKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPP-SICGLQSLKNLSVTNCH------------------------- 703 (829)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~------------------------- 703 (829)
|++.......+ ..+++|..|.+..|. +..++. ++..+.+++.+.+..|.
T Consensus 150 n~i~Cir~~al----~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 150 NHINCIRQDAL----RDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hhhcchhHHHH----HHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 66554333322 235555555555542 222222 33344444444333222
Q ss_pred ------------------------------------ccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEe
Q 003325 704 ------------------------------------SLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLN 746 (829)
Q Consensus 704 ------------------------------------~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 746 (829)
.....| ..|..|++|++|++++|.....-+..|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 111222 3467788999999988776666667788888899998
Q ss_pred ccCCcCCCCCcc-ccCCCccccEeeccccccCccCCcccccccccCceeccch
Q 003325 747 ISQCVSLSCLPQ-GIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 747 l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
|..| .+..+.. .|..+.+|++|+|.+|.+..-.|-.+..+.+|..|.+-.|
T Consensus 305 L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 305 LTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred cCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 8885 4444433 4788999999999999976677777777888887775433
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=3.7e-09 Score=112.16 Aligned_cols=270 Identities=15% Similarity=0.095 Sum_probs=147.1
Q ss_pred ccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++|++..++++..++.. ......+.++|++|+|||+||+.+++. ....+ ..+..+.......+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~----~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL----KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE----EEeccchhcCchhHH-HHH
Confidence 3579999999998888853 234567889999999999999999963 22222 122211111111221 112
Q ss_pred HhhcCCCC--CCC-CCCcchh-hHHHHhhcCCcEEEEEcCCCChHhHHHhhhcCCCceEEEEeeccccc-----cccceE
Q 003325 259 GFVSGCDS--MEP-NYVIPHW-NLQIQSKLGSRCLVVLDDVWSLAVLEQLIFRVPGCKTLVVSRFKFST-----VLNDTY 329 (829)
Q Consensus 259 ~~l~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~gs~iivTtR~~~~~-----~~~~~~ 329 (829)
..+..... .+. ....... ......+.+.+..+|+|+..+..++.... .+.+-|..||+...+. .....+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL--PPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC--CCeEEEEecCCccccCHHHHhhcceEE
Confidence 22211100 000 0000000 01111123334444454444333332211 1244555666664433 123567
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCCccccc
Q 003325 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICESHE 409 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~ 409 (829)
++++++.++..+++.+.+..... ...++....|++.|+|.|-.+..++..+ |..+. ......+....-
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~--~~~~~~it~~~v 222 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ--VRGQKIINRDIA 222 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH--HcCCCCcCHHHH
Confidence 99999999999999988753322 2335678899999999997665554432 11110 000011111111
Q ss_pred hhHHHHHHHhhcCCChhHHHHHH-hhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHH-HHhhcchhhh
Q 003325 410 NNLLDRMAISIQYLPKKVKECFL-DLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILV-ELSDRNLLKI 478 (829)
Q Consensus 410 ~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~-~L~~~sli~~ 478 (829)
......+...|..++++.+..+. .++.+.. -.+..+.+.. .-+.+...+...++ .|++++|++.
T Consensus 223 ~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~-~~~~~~~ia~----~lg~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 223 LKALEMLMIDELGLDEIDRKLLSVLIEQFQG-GPVGLKTLAA----ALGEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC-CcccHHHHHH----HhCCCcchHHHhhhHHHHHcCCccc
Confidence 22333356678889988888776 4466643 3555544433 34667778888888 6999999963
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3e-11 Score=123.89 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=145.2
Q ss_pred ccCCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCC--cccc
Q 003325 562 MEFPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKS--SIPL 639 (829)
Q Consensus 562 ~~~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~--~~~l 639 (829)
.++.+|+.+.|+-+.-.....-.....|+++|.|+|+.|-+.+.. .-...+..||+|+.|+++.|.+.....+ ...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356677777776654321111135778999999999988654322 1124567899999999999988755544 3457
Q ss_pred CCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccch--hhccCCCC
Q 003325 640 KKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELP--ADIGKMKS 717 (829)
Q Consensus 640 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~ 717 (829)
.+|+.|.|+.|.+... ........+|+|+.|+|.+|..+..-..+...+..|+.|||++|..+. ++ ...++|+.
T Consensus 197 ~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 8999999999988632 222233568999999999986444333345567899999999987544 33 46789999
Q ss_pred CCEEecccCCcCCc-cccc-----ccCCCCCCEEeccCCcCCCCCc--cccCCCccccEeeccccccCc
Q 003325 718 LQILRLYACPHLRT-LPAR-----ICELVCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIW 778 (829)
Q Consensus 718 L~~L~l~~~~~l~~-lp~~-----~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~ 778 (829)
|+.|+++.|..... +|+. ...+++|++|++..|+. ..++ ..+..+++|+.|.+..|.+..
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhcccccccc
Confidence 99999998754321 2322 35678999999999754 2332 236677888888888887543
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=1.2e-08 Score=108.99 Aligned_cols=251 Identities=16% Similarity=0.128 Sum_probs=147.1
Q ss_pred cccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
...++|++..++.+..++.. ......+.++|++|+||||+|+.+++.. ... +.++........ .-+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~----~~~~~~~~~~~~-~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVN----IRITSGPALEKP-GDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCC----eEEEecccccCh-HHHHHH
Confidence 35689999999998887753 3456788999999999999999999642 222 112222111111 111222
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH--hHHHhh----------------------hcCC-Cce
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLI----------------------FRVP-GCK 312 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~~~~l~----------------------~~~~-gs~ 312 (829)
+..+ ++..+|++|+++... ..+.+. ...| .+-
T Consensus 97 l~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 97 LTNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred HHhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 2221 123355556555321 111111 0112 344
Q ss_pred EEEEeeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCC
Q 003325 313 TLVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP 387 (829)
Q Consensus 313 iivTtR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~ 387 (829)
|..||+..... .....+++++++.++..+++...+...+. ...++.+..|++.|+|.|-.+..+...+.
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~--- 227 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR--- 227 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence 55566655433 12356899999999999999988754322 23456899999999999965554444321
Q ss_pred hhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHH-hhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHH
Q 003325 388 EMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFL-DLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAI 466 (829)
Q Consensus 388 ~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~ 466 (829)
.|.... ....+....-......+...+..|++..+..+. ....|+.+ .+..+.+... -+.+...+++.
T Consensus 228 --~~a~~~----~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~----lg~~~~~~~~~ 296 (328)
T PRK00080 228 --DFAQVK----GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA----LGEERDTIEDV 296 (328)
T ss_pred --HHHHHc----CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH----HCCCcchHHHH
Confidence 111110 011111111223445566778889988888886 66667654 5666665433 35666677777
Q ss_pred HH-HHhhcchhhhh
Q 003325 467 LV-ELSDRNLLKIV 479 (829)
Q Consensus 467 l~-~L~~~sli~~~ 479 (829)
++ .|++.+|++..
T Consensus 297 ~e~~Li~~~li~~~ 310 (328)
T PRK00080 297 YEPYLIQQGFIQRT 310 (328)
T ss_pred hhHHHHHcCCcccC
Confidence 77 89999999743
No 31
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=1.1e-09 Score=104.97 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccC---CeEEEEEeCCCCCHH---HHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFN---NRILFLTVSQSPNVE---QLRAKVWGFVSGCDSMEPNYVIPHWNLQ 279 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~~wv~v~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 279 (829)
|++.|.|.+|+||||+++.++.+..-..... ..++|.+.+...... .+...+........ ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHHHHHHH
Confidence 5899999999999999999996544333322 234566665443322 33333333322111 0011111111
Q ss_pred HHhhcCCcEEEEEcCCCChHh-------------HHHhhhc--CCCceEEEEeeccccc------cccceEEccCCCHHH
Q 003325 280 IQSKLGSRCLVVLDDVWSLAV-------------LEQLIFR--VPGCKTLVVSRFKFST------VLNDTYEVELLREDE 338 (829)
Q Consensus 280 ~~~~~~~~~LlVlDdv~~~~~-------------~~~l~~~--~~gs~iivTtR~~~~~------~~~~~~~l~~L~~~e 338 (829)
....+++++|+|++++... +..+... .++.+++||+|..... .....+++++|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1267899999999985321 3334444 6799999999998762 333579999999999
Q ss_pred HHHHHHHhh
Q 003325 339 SLSLFCYSA 347 (829)
Q Consensus 339 ~~~Lf~~~a 347 (829)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997763
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-11 Score=123.89 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=146.2
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCC---CCCCccccCCCceEEeeeccccccccccccc
Q 003325 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQ---LPKSSIPLKKMQKISFVLCKINNSLDQSVVD 662 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 662 (829)
=+++++||...|.++........ .....|++++.|||++|-+.. +..-...+++|+.|+|+.|.+...+.....
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~- 193 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT- 193 (505)
T ss_pred hhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-
Confidence 45788999999988765443321 345678999999999997763 233356799999999999998765544332
Q ss_pred cCCccccccccccccccccc-cCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccc--ccccCC
Q 003325 663 LPKTLPCLTELTFDHCDDLM-KLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICEL 739 (829)
Q Consensus 663 ~~~~~~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l 739 (829)
..+++|+.|.|++|.... .+....-.+|+|+.|+|..|.....-......++.|+.|+|++|+.+. ++ ...+.+
T Consensus 194 --~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 194 --LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred --hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence 257899999999997542 333334578999999999986443333445567899999999977554 33 446789
Q ss_pred CCCCEEeccCCcCCC-CCccc-----cCCCccccEeeccccccCccCCc--ccccccccCceeccch
Q 003325 740 VCLKYLNISQCVSLS-CLPQG-----IGNLIRLEKIDMRECSQIWSLPK--SVNSLKSLRQVICEED 798 (829)
Q Consensus 740 ~~L~~L~l~~~~~l~-~lp~~-----l~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~~~~~ 798 (829)
|.|+.|+++.|..-+ .+|+. ...+++|+.|++..|+ +...++ .+..+++|+.|.|..+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccc
Confidence 999999999864332 23443 3567899999999999 544442 4556777777776555
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=3.3e-09 Score=108.04 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=97.8
Q ss_pred ccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH--------
Q 003325 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK-------- 256 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~-------- 256 (829)
++||+.++++|.+++.. +..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+..........+..-
T Consensus 1 F~gR~~el~~l~~~l~~-~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-GPSQHILLYGPRGSGKTSLLKEFINELK-EKGY--KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT---EE--CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh-hcCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC--cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 58999999999998863 4578899999999999999999996321 2222 2224444333322211111
Q ss_pred -HHHhhc----CCCC-----CCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH-----------hHHHhhhc---CCC
Q 003325 257 -VWGFVS----GCDS-----MEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-----------VLEQLIFR---VPG 310 (829)
Q Consensus 257 -i~~~l~----~~~~-----~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~-----------~~~~l~~~---~~g 310 (829)
+...+. .... .........+....+.+ .+++++||+||++... .+..+... .+.
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111111 1100 00111122233344433 4456999999998554 11222222 223
Q ss_pred ceEEEEeeccccc-----------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 311 CKTLVVSRFKFST-----------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 311 s~iivTtR~~~~~-----------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
..+|+++...... .....+.+++|+.+++++++...+-..... ...++...+|+..+||.|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3444444332111 223459999999999999998865333111 12345679999999999998864
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=9.9e-08 Score=99.40 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcc---hhhHH
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIP---HWNLQ 279 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~ 279 (829)
....++.|+|++|+||||+++.+++.... ..+ .+.|+. ....+..+++..+...++.... ...... .+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~--~~~~~~-~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV--VAAKLV-NTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe--EEeeee-CCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHH
Confidence 34568999999999999999999964332 111 222332 2345667788888877754321 111111 11111
Q ss_pred H-H-hhcCCcEEEEEcCCCCh--HhHHHhhh---cC----CCceEEEEeeccccc------------cccceEEccCCCH
Q 003325 280 I-Q-SKLGSRCLVVLDDVWSL--AVLEQLIF---RV----PGCKTLVVSRFKFST------------VLNDTYEVELLRE 336 (829)
Q Consensus 280 ~-~-~~~~~~~LlVlDdv~~~--~~~~~l~~---~~----~gs~iivTtR~~~~~------------~~~~~~~l~~L~~ 336 (829)
+ . ...+++++||+||++.. +.++.+.. .. ....|++|....... .....+++++++.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 1 1 12678899999999964 34444332 11 123455665443211 1134678999999
Q ss_pred HHHHHHHHHhhcCCCC-CCCchhHHHHHHHHHHcCCchhHHHHHHHHh
Q 003325 337 DESLSLFCYSAFGQKT-IPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (829)
Q Consensus 337 ~e~~~Lf~~~a~~~~~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 383 (829)
+|..+++...+..... ......++..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998877643221 1123456789999999999999999988876
No 35
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=98.91 E-value=2.8e-08 Score=90.35 Aligned_cols=133 Identities=35% Similarity=0.527 Sum_probs=118.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHhhhhhHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Q 003325 3 VTDLFAGEIAAELLKMLISICRRSSLCKSSAEQLRTTIEQLLPTIHEIKYSGVELPPIRQTQLDHLSETLKDGIELCRKV 82 (829)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~d~ 82 (829)
++++++|++++++++.+..+..+...++...+++..+++.+.|.|+.+.....+..+....+++...+.|++|...++.+
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~ 85 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKC 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 45677788999999999999999999999999999999999999999998888888877889999999999999999999
Q ss_pred hcCCchhhhhcHHHHHHHHHHHHHHhhhhccccchhhhccchhhhHhhhhHHh
Q 003325 83 LASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHVLADVHHMRFETAERFD 135 (829)
Q Consensus 83 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (829)
....+|++++...+.++++..++.+.+|++.+++.+.-.|+.+.+..+.+...
T Consensus 86 sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~ 138 (147)
T PF05659_consen 86 SKVRRWNLYKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNT 138 (147)
T ss_pred ccccHHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999998888888887766654443
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=8.7e-11 Score=124.18 Aligned_cols=160 Identities=25% Similarity=0.367 Sum_probs=113.2
Q ss_pred cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC
Q 003325 613 CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 692 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~ 692 (829)
++.+..|+.+.+..|.+..+|..+.++..|.+|+|+.|++....... . +--|+.|-+++| +++.+|..++.+.
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-----C-~lpLkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-----C-DLPLKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-----h-cCcceeEEEecC-ccccCCcccccch
Confidence 44556777778888888888888888888888888877754321111 1 123677777765 5777887788777
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecc
Q 003325 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMR 772 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 772 (829)
+|..|+.+.|. +..+|..++.|.+|+.|.+.. +.+..+|..++.|+ |..||++. +++..+|-.|.+|+.|++|-|.
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeeccc-Cceeecchhhhhhhhheeeeec
Confidence 88888888754 667777788888888888777 44556777777554 77788775 5667788778888888888888
Q ss_pred ccccCccCCccc
Q 003325 773 ECSQIWSLPKSV 784 (829)
Q Consensus 773 ~~~~~~~lp~~l 784 (829)
+|+ +.+-|..+
T Consensus 243 nNP-LqSPPAqI 253 (722)
T KOG0532|consen 243 NNP-LQSPPAQI 253 (722)
T ss_pred cCC-CCCChHHH
Confidence 888 66666544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=5.9e-11 Score=125.43 Aligned_cols=190 Identities=22% Similarity=0.316 Sum_probs=148.4
Q ss_pred EEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeec
Q 003325 571 ILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLC 650 (829)
Q Consensus 571 ~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 650 (829)
..+++.+....+|..+..+..|..|.++.|..... ...++++..|.+|+|+.|.+..+|..++.|+ |+.|.++.|
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i----p~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTI----PEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceec----chhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 45566666788998888888999998887764332 2446788999999999999999999887764 889999988
Q ss_pred cccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCC
Q 003325 651 KINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLR 730 (829)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~ 730 (829)
++... +...+..+.|..|+.+.| .+-.+|+.++++.+|+.|++..|+ +..+|..+..| .|..|++++ +.+.
T Consensus 154 kl~~l-----p~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfSc-Nkis 224 (722)
T KOG0532|consen 154 KLTSL-----PEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSC-NKIS 224 (722)
T ss_pred ccccC-----CcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeeccc-Ccee
Confidence 86532 222346889999999998 577789999999999999999976 67788888755 589999986 6678
Q ss_pred cccccccCCCCCCEEeccCCcCCCCCcccc---CCCccccEeeccccc
Q 003325 731 TLPARICELVCLKYLNISQCVSLSCLPQGI---GNLIRLEKIDMRECS 775 (829)
Q Consensus 731 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l---~~l~~L~~L~l~~~~ 775 (829)
.+|..|.+|+.|++|-|.+|+ +..-|..| +...-.++|++.-|.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 899999999999999998865 44444333 344456788888773
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.6e-07 Score=94.03 Aligned_cols=203 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 003325 200 IGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNL 278 (829)
Q Consensus 200 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~ 278 (829)
.+.+.+.-.-+|||+|+||||||+.+.. .....|. .++.. .+++++...+ +.-
T Consensus 43 v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~------~~sAv~~gvkdlr~i~-e~a----------------- 96 (436)
T COG2256 43 VEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE------ALSAVTSGVKDLREII-EEA----------------- 96 (436)
T ss_pred HhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE------EeccccccHHHHHHHH-HHH-----------------
Confidence 3356777888999999999999999994 4555553 22221 2333332222 111
Q ss_pred HHHhhcCCcEEEEEcCCC--ChHhHHHhhhcCC-CceEEE--Eeeccccc------cccceEEccCCCHHHHHHHHHHhh
Q 003325 279 QIQSKLGSRCLVVLDDVW--SLAVLEQLIFRVP-GCKTLV--VSRFKFST------VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 279 ~~~~~~~~~~LlVlDdv~--~~~~~~~l~~~~~-gs~iiv--TtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
......+++.+|++|.|+ +..|-+.|.+... |.-|+| ||-++... ....++++++|+.++-.+++.+.+
T Consensus 97 ~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 97 RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 011125889999999999 5678888888654 666666 45554432 456899999999999999998844
Q ss_pred cCCC-CCC---CchhHHHHHHHHHHcCCchhHH----HHHHHHhcCCC---hhHHHHHHHHhccCCCCccccchhHHHHH
Q 003325 348 FGQK-TIP---PSANENLVKQIVKKCKGLPLAL----KVIGASLREQP---EMYWTSAKKRLSKGEPICESHENNLLDRM 416 (829)
Q Consensus 348 ~~~~-~~~---~~~~~~~~~~i~~~~~g~PLai----~~~~~~l~~~~---~~~w~~~l~~l~~~~~~~~~~~~~i~~~l 416 (829)
.... ... ....++....++..++|---++ .+++..-+... .+..++.+.+-........+..-++..++
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 3222 111 1123557788899998865433 33333333322 23333333331111112222244677778
Q ss_pred HHhhcCCChhHH
Q 003325 417 AISIQYLPKKVK 428 (829)
Q Consensus 417 ~~sy~~L~~~~k 428 (829)
.-|..+=+++..
T Consensus 257 hKSvRGSD~dAA 268 (436)
T COG2256 257 HKSVRGSDPDAA 268 (436)
T ss_pred HHhhccCCcCHH
Confidence 888877765543
No 39
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=5.7e-08 Score=100.67 Aligned_cols=290 Identities=20% Similarity=0.201 Sum_probs=195.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
...+.+.++|.|||||||++-.+. + +...|...+.++....-.+...+...+...+.-.... ...........
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a--~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~----g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAA--H-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP----GDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhH--h-HhhhcccceeeeeccccCchhHhHHHHHhhccccccc----chHHHHHHHHH
Confidence 356889999999999999999999 4 7888988886666666666666666665555433211 11122344445
Q ss_pred hcCCcEEEEEcCCCCh-----HhHHHhhhcCCCceEEEEeeccccccccceEEccCCCHH-HHHHHHHHhhcCCCC--CC
Q 003325 283 KLGSRCLVVLDDVWSL-----AVLEQLIFRVPGCKTLVVSRFKFSTVLNDTYEVELLRED-ESLSLFCYSAFGQKT--IP 354 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~-----~~~~~l~~~~~gs~iivTtR~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a~~~~~--~~ 354 (829)
..+++.++|+||-.+. .....+..+.+.-.|+.|+|+.........+.++.|+.. ++.++|...+.-... .-
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 5789999999998754 224455566777889999999987767778888888866 799998877643221 11
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhH----HHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHH
Q 003325 355 PSANENLVKQIVKKCKGLPLALKVIGASLREQPEMY----WTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKEC 430 (829)
Q Consensus 355 ~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~----w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~ 430 (829)
.........+|.+...|.|++|..+++..+.-...+ ..+-...+......-..........+..||.-|..-.+-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 223355889999999999999999999988764332 2222233333222112223456778999999999999999
Q ss_pred HHhhCCCCCCCccCHHHHHHHHHHhcCC---CHHHHHHHHHHHhhcchhhhhhhcccCccccccccccchhhHHHHHHHH
Q 003325 431 FLDLGSFPEDKKIPLEVLINMWVEIHDL---DEEEAFAILVELSDRNLLKIVKDARAGDMYSSYYEISVTQHDVLRDLAL 507 (829)
Q Consensus 431 fl~~a~fp~~~~i~~~~l~~~w~a~~~~---~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~~~ 507 (829)
|..++.|...+.-. ...|.+.+.. +.......+..+++++++.-.... +. ..|+.-+-++.|+.
T Consensus 245 ~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~--~~-------a~~Rl~eT~r~Yal 311 (414)
T COG3903 245 FGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLL--GR-------ARYRLLETGRRYAL 311 (414)
T ss_pred hcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhh--hH-------HHHHHHHHHHHHHH
Confidence 99999998776544 2345554433 344666677888899987543321 11 13566677777776
Q ss_pred Hhhcc
Q 003325 508 HLSNQ 512 (829)
Q Consensus 508 ~~~~~ 512 (829)
.+..+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 55543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.4e-09 Score=104.47 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=87.0
Q ss_pred cccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCC----C--------------------C
Q 003325 580 YFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP----K--------------------S 635 (829)
Q Consensus 580 ~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp----~--------------------~ 635 (829)
..+|-.+.-+++|+.+.++.|+..+.. ++ -..=|.|..+...+..+...| . .
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~~i~--~~--~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~ 279 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTENIV--DI--ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVS 279 (490)
T ss_pred cccccchHHhhhhheeeeeccchhhee--ce--eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEe
Confidence 345555666778888888777543321 11 011245566655554433211 1 1
Q ss_pred ccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCC
Q 003325 636 SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKM 715 (829)
Q Consensus 636 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l 715 (829)
+...+.|++|+|++|.+.. ++.+. +-.|.++.|++++|. +..+.+ +..+++|+.||||+|. +..+..+-.+|
T Consensus 280 ~dTWq~LtelDLS~N~I~~-iDESv----KL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQ-IDESV----KLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKL 351 (490)
T ss_pred cchHhhhhhccccccchhh-hhhhh----hhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhh
Confidence 1123445555555554432 11111 234555555555553 222222 4555555555555543 33333333345
Q ss_pred CCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCc--cccCCCccccEeeccccccCccCC
Q 003325 716 KSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 716 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
.+.++|.+++| .++.+ .+++++-+|..|++++|+ +..+. ..|+++|+|+++.+.+|+ +..+|
T Consensus 352 GNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred cCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 55555555552 22322 234555555566665532 22221 235556666666666665 33333
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=8e-09 Score=121.81 Aligned_cols=223 Identities=21% Similarity=0.215 Sum_probs=133.1
Q ss_pred cCCCCceEEEccccCCccccCCCcccCCccccceeeecccc-cCCCCCCccccCCCceEEeeeccccccccccccccCCc
Q 003325 588 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKT 666 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 666 (829)
++++|++|-+..+.. .........|..++.|++|||++|. +..+|.+++.|-+|++|+++++.+. .+|...++
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----~LP~~l~~ 616 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----HLPSGLGN 616 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----ccchHHHH
Confidence 345899998887753 0111111237789999999999764 6699999999999999999988765 23334466
Q ss_pred cccccccccccccccccCCccccCcCCCcEEEeccccc--cccchhhccCCCCCCEEecccCCcCCcccccccCCCCCC-
Q 003325 667 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHS--LQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLK- 743 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~--~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~- 743 (829)
+..|.+|++..+..+..+|..+..|++|++|.+..... ....-..+.+|.+|+.|....+.. .+...+..++.|.
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRS 694 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHH
Confidence 88899999999887777777677799999999876431 111223445566666665543222 1112223333333
Q ss_pred ---EEeccCCcCCCCCccccCCCccccEeeccccccCccCCcc---------cccccccCceeccchhhhhhhhhhhhCC
Q 003325 744 ---YLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS---------VNSLKSLRQVICEEDVSWAWKDLEKTLP 811 (829)
Q Consensus 744 ---~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~---------l~~l~~L~~L~~~~~~~~~~~~l~~~lp 811 (829)
.+.+.+ ......+..+..+.+|+.|.+.+|......... +.++..+....|.......|..+ .|
T Consensus 695 ~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f---~~ 770 (889)
T KOG4658|consen 695 LLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF---AP 770 (889)
T ss_pred HhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc---cC
Confidence 222222 223344455677777777777777743221111 22333333344545555555543 35
Q ss_pred CceEEeccccc
Q 003325 812 NLHVQVPAKCF 822 (829)
Q Consensus 812 ~L~~~~~~~~~ 822 (829)
+|+......|.
T Consensus 771 ~L~~l~l~~~~ 781 (889)
T KOG4658|consen 771 HLTSLSLVSCR 781 (889)
T ss_pred cccEEEEeccc
Confidence 55555444443
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.4e-08 Score=112.15 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=114.0
Q ss_pred ChhhhcCCCCceEEEccccCCccccCCCcccCCc-cccceeeecccccCCCCCCccccCCCceEEeeecccccccccccc
Q 003325 583 PPFIENMEKLRALIVINYSTSNAALGNFSVCSNL-TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVV 661 (829)
Q Consensus 583 p~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 661 (829)
+..+...+++..|.+.++...... +....+ ++|+.|++++|.+..+|..+..+++|+.|+++.|++.......
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~----~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-- 182 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIP----PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-- 182 (394)
T ss_pred chhhhcccceeEEecCCcccccCc----cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh--
Confidence 344555566777777665543221 112233 2777777777777777766777777777777777655322111
Q ss_pred ccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCC
Q 003325 662 DLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVC 741 (829)
Q Consensus 662 ~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 741 (829)
...++|+.|++++| .+..+|..+..+.+|++|.+++|. ....+..+.++.++..|.+.+ +.+..++..++.+++
T Consensus 183 ---~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~ 256 (394)
T COG4886 183 ---SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSN 256 (394)
T ss_pred ---hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccc
Confidence 14667777777776 466676655666667777777664 334444566677777776554 344444566677777
Q ss_pred CCEEeccCCcCCCCCccccCCCccccEeeccccccCccCC
Q 003325 742 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp 781 (829)
|+.|++++| .+..++. ++.+.+|+.|+++++.....+|
T Consensus 257 l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 257 LETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 777777764 4445544 6777777777777777544444
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=1.8e-06 Score=95.08 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=102.1
Q ss_pred cccccchhhHH---HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHH
Q 003325 184 MGIGMALGKNK---VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (829)
Q Consensus 184 ~~vgr~~~~~~---l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (829)
.++|.+..+.. +.+++. ......+.++|++|+||||+|+.+++. .... |+.++... ...++ +.++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~-~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~------~~~l~a~~~~~~~i-r~ii~ 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIE-AGRLSSMILWGPPGTGKTTLARIIAGA--TDAP------FEALSAVTSGVKDL-REVIE 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHH-cCCCceEEEECCCCCCHHHHHHHHHHH--hCCC------EEEEecccccHHHH-HHHHH
Confidence 46777666544 666665 445667889999999999999999953 2222 22222211 22221 22222
Q ss_pred hhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhcCC-CceEEEE--eeccccc------cccce
Q 003325 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRVP-GCKTLVV--SRFKFST------VLNDT 328 (829)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~~~-gs~iivT--tR~~~~~------~~~~~ 328 (829)
.... ....+++.+|++|+++.. .+.+.+..... |..++|. |.+.... .....
T Consensus 83 ~~~~-----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~ 145 (413)
T PRK13342 83 EARQ-----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQV 145 (413)
T ss_pred HHHH-----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhcccee
Confidence 2110 001357889999999954 45666655443 4445543 3332211 33468
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 003325 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIG 380 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 380 (829)
+++.+++.++...++.+.+...........++....+++.|+|.|..+..+.
T Consensus 146 ~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 146 FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 8999999999999998865321110012335678889999999987665443
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=2.4e-08 Score=110.30 Aligned_cols=174 Identities=30% Similarity=0.428 Sum_probs=104.1
Q ss_pred CCccccceeeecccccCCCCCCccccC-CCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcC
Q 003325 614 SNLTNLRSLWLEKVSISQLPKSSIPLK-KMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQ 692 (829)
Q Consensus 614 ~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~ 692 (829)
..++.+..|++.+|.++.+|.....+. +|+.|+++.+.+.... .....+++|+.|++++| .+..+|...+.++
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-----hhhhccccccccccCCc-hhhhhhhhhhhhh
Confidence 344566667777777776666666664 6777777666654321 11234666777777666 4555665555666
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecc
Q 003325 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMR 772 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 772 (829)
+|+.|++++|. +..+|..+..+.+|++|.+++|. ....+..+..++++..|.+.+| .+..++..++.+++|++|+++
T Consensus 187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceeccc
Confidence 77777777654 55666555555556676666643 3334445566666666665543 333445556666667777777
Q ss_pred ccccCccCCcccccccccCceeccch
Q 003325 773 ECSQIWSLPKSVNSLKSLRQVICEED 798 (829)
Q Consensus 773 ~~~~~~~lp~~l~~l~~L~~L~~~~~ 798 (829)
+|. +..++. ++.+.+|+.|+++++
T Consensus 264 ~n~-i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 264 NNQ-ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc-cccccc-ccccCccCEEeccCc
Confidence 666 455554 666666667766654
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.65 E-value=4.3e-09 Score=106.78 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=135.8
Q ss_pred ccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCC-CCccccCCCceEEeee-ccccccc
Q 003325 579 EYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLP-KSSIPLKKMQKISFVL-CKINNSL 656 (829)
Q Consensus 579 ~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~-~~~~~~~ 656 (829)
...+|..+. ..-..+.|..|....... ..|+.+++||.|||++|.|+.+. +.|..+++|..|-+.+ |++...-
T Consensus 58 L~eVP~~LP--~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 58 LTEVPANLP--PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cccCcccCC--CcceEEEeccCCcccCCh---hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 445554222 244556666665443332 35778899999999999998654 4588888888888776 5554322
Q ss_pred cccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchh-hccCCCCCCEEecccCCcC------
Q 003325 657 DQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPA-DIGKMKSLQILRLYACPHL------ 729 (829)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~l------ 729 (829)
. ..+..+..|+.|.+.-|...-.....+..|++|..|.+-+|. .+.++. .+..+..++.+.+..|..+
T Consensus 133 k----~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 133 K----GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred h----hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccc
Confidence 2 234567788888887775444455677889999999988864 556664 5666677776666543311
Q ss_pred -------------------------------------------------------Cccc-ccccCCCCCCEEeccCCcCC
Q 003325 730 -------------------------------------------------------RTLP-ARICELVCLKYLNISQCVSL 753 (829)
Q Consensus 730 -------------------------------------------------------~~lp-~~~~~l~~L~~L~l~~~~~l 753 (829)
...| ..|+.+++|+.|+|++|...
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 0111 12566778888888776544
Q ss_pred CCCccccCCCccccEeeccccccCccCC-cccccccccCceeccchhhh
Q 003325 754 SCLPQGIGNLIRLEKIDMRECSQIWSLP-KSVNSLKSLRQVICEEDVSW 801 (829)
Q Consensus 754 ~~lp~~l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~~~~~~~~ 801 (829)
..-+.+|..+..++.|.|..|. +..+. ..+..+.+|+.|++.+|...
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeE
Confidence 4445567777888888888877 34333 34566777888887766433
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=4.3e-06 Score=94.79 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=116.3
Q ss_pred CcccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhcccc---ccccC-CeEEEEEeCCCCCHHH
Q 003325 181 GNLMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQV---TSYFN-NRILFLTVSQSPNVEQ 252 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~-~~~~wv~v~~~~~~~~ 252 (829)
.+..+.||+.++++|...|.. +....++-|+|++|.|||+.++.|.+.-.- ....+ ..+++++.....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 356789999999999998854 233467789999999999999999853211 11122 2345777766677888
Q ss_pred HHHHHHHhhcCCCCCCCCCCcchhhHHHHhh---cCCcEEEEEcCCCChH-----hHHHhh--hcCCCceEEE--Eeecc
Q 003325 253 LRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVWSLA-----VLEQLI--FRVPGCKTLV--VSRFK 320 (829)
Q Consensus 253 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~LlVlDdv~~~~-----~~~~l~--~~~~gs~iiv--TtR~~ 320 (829)
++..|..++.+............+...+..+ .+...+||||+|+... .+-.+. +..++++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 8888888885443221111222233333332 2234699999998432 121111 2234666555 22211
Q ss_pred cc--------c--cccceEEccCCCHHHHHHHHHHhhcCCC-CCCCchhHHHHHHHHHHcCCchhHHHHHHHHh
Q 003325 321 FS--------T--VLNDTYEVELLREDESLSLFCYSAFGQK-TIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (829)
Q Consensus 321 ~~--------~--~~~~~~~l~~L~~~e~~~Lf~~~a~~~~-~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 383 (829)
.. . .....+..++.+.++-.+++...+-... ...+...+-+|+.++...|-.=.||.++-...
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 0 1223466789999999999988875321 11222223233333333344455666554443
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=4.1e-09 Score=105.66 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=123.1
Q ss_pred hhhhcCCCCceEEEccccCCccccCCCc-ccCCccccceeeecccccCCC--------------CCCccccCCCceEEee
Q 003325 584 PFIENMEKLRALIVINYSTSNAALGNFS-VCSNLTNLRSLWLEKVSISQL--------------PKSSIPLKKMQKISFV 648 (829)
Q Consensus 584 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~i~~l--------------p~~~~~l~~L~~L~L~ 648 (829)
+++..+++|++|+|+.|.++......+. .++++..|+.|.|.+|.+... ...+..-++|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3455566777777777766554444332 244566777777777765421 1123344677777777
Q ss_pred eccccccccccccccCCccccccccccccccccc----cCCccccCcCCCcEEEeccccccc----cchhhccCCCCCCE
Q 003325 649 LCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQI 720 (829)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~ 720 (829)
+|.+.+.....+...+...+.|+.+.+..|+... .+...+.++++|+.|||.+|.... .+...++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 7776654444444444556778888887765432 233456788999999999887543 24566778889999
Q ss_pred EecccCCcCCccccc-----ccCCCCCCEEeccCCcCCCC----CccccCCCccccEeecccccc
Q 003325 721 LRLYACPHLRTLPAR-----ICELVCLKYLNISQCVSLSC----LPQGIGNLIRLEKIDMRECSQ 776 (829)
Q Consensus 721 L~l~~~~~l~~lp~~-----~~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~ 776 (829)
|++++|.....-... -...|+|+.|.+.+|..... +...+...+.|+.|+|++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999998765432222 13468899999988765431 222345578899999999983
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=8.6e-07 Score=89.17 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
..+.+.++|++|+|||+||+++++. ...... .+.|+.+... ......++. .+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~-~~~y~~~~~~---~~~~~~~~~----------------------~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQR-TAIYIPLSKS---QYFSPAVLE----------------------NL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCC-CeEEeeHHHh---hhhhHHHHh----------------------hc
Confidence 3456899999999999999999964 222222 3446666421 000111111 11
Q ss_pred cCCcEEEEEcCCCCh---HhHHH-hhh----c-CCCceEEEEeeccccc-------------cccceEEccCCCHHHHHH
Q 003325 284 LGSRCLVVLDDVWSL---AVLEQ-LIF----R-VPGCKTLVVSRFKFST-------------VLNDTYEVELLREDESLS 341 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~~~-l~~----~-~~gs~iivTtR~~~~~-------------~~~~~~~l~~L~~~e~~~ 341 (829)
.+.-+|||||+|.. ..|+. +.. . ..|..+||+|.+..+. .....++++++++++.++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 12348999999953 44542 211 1 2366665555444221 224588999999999999
Q ss_pred HHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 342 LFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 342 Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
++.+.++...- ...++...-|++++.|..-.+..+
T Consensus 169 iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99998874432 223457888999988876655443
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=3.8e-08 Score=92.81 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=42.6
Q ss_pred ccccccccccccccccCCcccc-CcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccc-cCCCCCCEE
Q 003325 668 PCLTELTFDHCDDLMKLPPSIC-GLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARI-CELVCLKYL 745 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L 745 (829)
.+++.|+|++|. +..+. .++ .+.+|+.|++++|. ++.++ .+..+++|+.|++++|. +..++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 345666666653 33332 344 46777777777765 44453 56677788888887743 44454444 357788888
Q ss_pred eccCCcCCCCCc--cccCCCccccEeeccccccCccCCc----ccccccccCceec
Q 003325 746 NISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK----SVNSLKSLRQVIC 795 (829)
Q Consensus 746 ~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~~ 795 (829)
.+++|. +..+- ..+..+++|+.|++.+|+. ...+. .+..+|+|+.||-
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCC
Confidence 887753 32221 3466788888888888884 33342 3556777777773
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=1.2e-06 Score=84.42 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=93.5
Q ss_pred cccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
-..+||-+.-++++.-++.. ++.+.-+.+|||+|+||||||.-+++ .....|. +++...-....++. .+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~----~~sg~~i~k~~dl~-~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK----ITSGPAIEKAGDLA-AI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE----EEECCC--SCHHHH-HH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE----eccchhhhhHHHHH-HH
Confidence 35678988877776555431 25677899999999999999999995 4444442 33322111112221 11
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc------------CCCc-----------e
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR------------VPGC-----------K 312 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~------------~~gs-----------~ 312 (829)
+.. + +++-+|++|+++.. .+-+.+.+. +++. -
T Consensus 96 l~~----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 96 LTN----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHh----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111 1 24558889999953 344444432 2222 2
Q ss_pred EEEEeeccccc----c-ccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHh
Q 003325 313 TLVVSRFKFST----V-LNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (829)
Q Consensus 313 iivTtR~~~~~----~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 383 (829)
|=.|||...+. . ..-..+++.-+.+|-.++..+.+-.-+ -.-.++.+.+|++++.|-|--+.-+-+.+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44577777654 1 123458999999999999987763322 23346789999999999997666544443
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=9.2e-08 Score=110.66 Aligned_cols=113 Identities=18% Similarity=0.349 Sum_probs=89.4
Q ss_pred cccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEecc
Q 003325 669 CLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNIS 748 (829)
Q Consensus 669 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~ 748 (829)
.+..|+|++|...+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777888877667788888888888888888887777888888888888888888888777888888888888888888
Q ss_pred CCcCCCCCccccCCC-ccccEeeccccccCccCC
Q 003325 749 QCVSLSCLPQGIGNL-IRLEKIDMRECSQIWSLP 781 (829)
Q Consensus 749 ~~~~l~~lp~~l~~l-~~L~~L~l~~~~~~~~lp 781 (829)
+|.....+|..+..+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 887767788777653 466778888877555544
No 52
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=2.1e-06 Score=102.07 Aligned_cols=307 Identities=19% Similarity=0.182 Sum_probs=175.4
Q ss_pred ccccchhhHHHHHHhhcC--CCceEEEEEcCCCCcHHHHHHHHhhccccccccC---CeEEEEEeCCCC---CHHHHHHH
Q 003325 185 GIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN---NRILFLTVSQSP---NVEQLRAK 256 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~~wv~v~~~~---~~~~l~~~ 256 (829)
++||+.+.+.+...+... ..-.++.+.|.+|||||+|+++|.. .+.+.+. ... +-...... ...+..++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~-f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGK-FDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhh-cccccCCCchHHHHHHHHH
Confidence 589999999988888542 4566999999999999999999994 4443321 111 11111111 12223333
Q ss_pred HHHhhcCCCCC-------------------------------C---------CCCCcchh----hHHHHh--hcCCcEEE
Q 003325 257 VWGFVSGCDSM-------------------------------E---------PNYVIPHW----NLQIQS--KLGSRCLV 290 (829)
Q Consensus 257 i~~~l~~~~~~-------------------------------~---------~~~~~~~~----~~~~~~--~~~~~~Ll 290 (829)
+..++...... + +....... ...+.. .+.++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333110000 0 00000000 111111 25679999
Q ss_pred EEcCCCChH-----hHHHhhhcCC-----CceEEEEeecccc--c-----cccceEEccCCCHHHHHHHHHHhhcCCCCC
Q 003325 291 VLDDVWSLA-----VLEQLIFRVP-----GCKTLVVSRFKFS--T-----VLNDTYEVELLREDESLSLFCYSAFGQKTI 353 (829)
Q Consensus 291 VlDdv~~~~-----~~~~l~~~~~-----gs~iivTtR~~~~--~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 353 (829)
|+||++..+ .++.+....+ ...|..+...... . .....+.+.+|+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999997432 3344433322 1233333222221 1 33468999999999999999877633222
Q ss_pred CCchhHHHHHHHHHHcCCchhHHHHHHHHhcCC-------ChhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChh
Q 003325 354 PPSANENLVKQIVKKCKGLPLALKVIGASLREQ-------PEMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKK 426 (829)
Q Consensus 354 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 426 (829)
...+....|+++..|+|+.+.-+-..+..+ +...|..=..++... .. .+++.+.+..-.+.||..
T Consensus 238 ---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~-~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 238 ---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----AT-TDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hh-hHHHHHHHHHHHhcCCHH
Confidence 123478999999999999998887777653 233444333332221 11 223566788899999999
Q ss_pred HHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhhhhhhcccCccccccccccchhhHHHHHHH
Q 003325 427 VKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKIVKDARAGDMYSSYYEISVTQHDVLRDLA 506 (829)
Q Consensus 427 ~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~~~~~~mHdlv~~~~ 506 (829)
.+......||+ |..|+.+.|...+- ......+...++.|....++...+..+.+...... ..-..||.+++.|
T Consensus 310 t~~Vl~~AA~i--G~~F~l~~La~l~~---~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~--~Y~F~H~~vqqaa 382 (849)
T COG3899 310 TREVLKAAACI--GNRFDLDTLAALAE---DSPALEAAALLDALQEGLILPLSETYRFGSNVDIA--TYKFLHDRVQQAA 382 (849)
T ss_pred HHHHHHHHHHh--CccCCHHHHHHHHh---hchHHHHHHHHHHhHhhceeccccccccccccchh--hHHhhHHHHHHHH
Confidence 99999999999 46677777766653 24455666666666655554332222222211000 0014688888887
Q ss_pred HHhh
Q 003325 507 LHLS 510 (829)
Q Consensus 507 ~~~~ 510 (829)
-...
T Consensus 383 Y~~i 386 (849)
T COG3899 383 YNLI 386 (849)
T ss_pred hccC
Confidence 5433
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.9e-09 Score=104.02 Aligned_cols=178 Identities=17% Similarity=0.262 Sum_probs=83.3
Q ss_pred CCceEEEccccCCccccCCCcccCCccccceeeecccccC-CCCCCccccCCCceEEeeeccccccccccccccCCcccc
Q 003325 591 KLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSIS-QLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPC 669 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 669 (829)
.|++|++++......... ..++.+++|+.|.++++.+. .+...+.+-.+|+.|+|+.|.-..... ..-+..+++.
T Consensus 186 Rlq~lDLS~s~it~stl~--~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~--~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH--GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA--LQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHH--HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--HHHHHHhhhh
Confidence 577777765433222111 12456677777777777765 344445555667777776654322111 1112234556
Q ss_pred ccccccccccccccCCc-cccC-cCCCcEEEeccccccc---cchhhccCCCCCCEEecccCCcCCc-ccccccCCCCCC
Q 003325 670 LTELTFDHCDDLMKLPP-SICG-LQSLKNLSVTNCHSLQ---ELPADIGKMKSLQILRLYACPHLRT-LPARICELVCLK 743 (829)
Q Consensus 670 L~~L~L~~~~~~~~lp~-~i~~-l~~L~~L~l~~~~~~~---~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~ 743 (829)
|..|+|+.|....+.-. .+.+ -++|..|+|+||...- .+..-...+++|.+|+|++|..+.. ....+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 66666666643322111 1111 1355566666654211 1111123455555555555554432 122344555555
Q ss_pred EEeccCCcCCCCCccc---cCCCccccEeecccc
Q 003325 744 YLNISQCVSLSCLPQG---IGNLIRLEKIDMREC 774 (829)
Q Consensus 744 ~L~l~~~~~l~~lp~~---l~~l~~L~~L~l~~~ 774 (829)
+|+++.|..+ .|.. +...|+|.+|++.||
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 5555555322 1221 344455555555554
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.2e-05 Score=88.84 Aligned_cols=176 Identities=12% Similarity=0.096 Sum_probs=109.8
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFL 242 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv 242 (829)
...+||.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+.+.-.... .|.. ++++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D-viEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD-YVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce-EEEe
Confidence 3567999988889888887555566778999999999999998875321111 1111 2233
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivT 316 (829)
+.+....++++ +++++..... -..++.-++|||+++.. +.++.++.. .+..++|+|
T Consensus 94 DAas~rgVDdI-ReLIe~a~~~-----------------P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 94 DAASNRGVDEM-AALLERAVYA-----------------PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred cccccccHHHH-HHHHHHHHhc-----------------cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33222222222 1122211100 01345568889999954 446666542 246788887
Q ss_pred eeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch-hHHHHH
Q 003325 317 SRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP-LALKVI 379 (829)
Q Consensus 317 tR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 379 (829)
|++...- .....++++.++.++..+.+.+.+..++- ...++....|++.++|.. -|+..+
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7776422 34578999999999999999887643321 224567889999999865 455553
No 55
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=7.4e-08 Score=90.90 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=46.2
Q ss_pred ccCCccccCcCCCcEEEeccccccccchhhcc-CCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCcccc
Q 003325 682 MKLPPSICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGI 760 (829)
Q Consensus 682 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l 760 (829)
...|. +.+...++.|+|++|. +..+ +.++ .+.+|+.|++++|. +..++ ++..+++|+.|++++| .++.+++.+
T Consensus 10 ~~~~~-~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 10 EQIAQ-YNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHH
T ss_pred ccccc-cccccccccccccccc-cccc-cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCC-CCCccccch
Confidence 34443 5566789999999976 4444 3565 58899999999965 45554 5788999999999995 566676555
Q ss_pred -CCCccccEeeccccccCccCC--cccccccccCceeccchhhhhhh----hhhhhCCCceEE
Q 003325 761 -GNLIRLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEEDVSWAWK----DLEKTLPNLHVQ 816 (829)
Q Consensus 761 -~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~~~~~~~~~~~----~l~~~lp~L~~~ 816 (829)
..+++|++|++++|. +..+. ..+..+++|+.|++.+|....-+ .+...+|+|++.
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 468999999999998 44443 35778999999999888554321 233355665554
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=2.7e-07 Score=106.88 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=95.8
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeecc
Q 003325 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMR 772 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 772 (829)
.++.|+|++|.....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999998888899999999999999999998888999999999999999999988777899999999999999999
Q ss_pred ccccCccCCcccccc-cccCceeccchhh
Q 003325 773 ECSQIWSLPKSVNSL-KSLRQVICEEDVS 800 (829)
Q Consensus 773 ~~~~~~~lp~~l~~l-~~L~~L~~~~~~~ 800 (829)
+|.+.+.+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999888999887653 4566777776643
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=2.7e-07 Score=97.54 Aligned_cols=84 Identities=25% Similarity=0.497 Sum_probs=60.4
Q ss_pred cccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCC
Q 003325 637 IPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMK 716 (829)
Q Consensus 637 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 716 (829)
..+.++..|++++|.+.. ++ ...++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP-------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s----- 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LP-------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES----- 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cC-------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc-----
Confidence 346889999999985442 22 224579999999999998888755 469999999999778777754
Q ss_pred CCCEEeccc--CCcCCcccccc
Q 003325 717 SLQILRLYA--CPHLRTLPARI 736 (829)
Q Consensus 717 ~L~~L~l~~--~~~l~~lp~~~ 736 (829)
|+.|++.+ |..+..+|.++
T Consensus 114 -Le~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred -cceEEeCCCCCcccccCcchH
Confidence 55566654 33456666543
No 58
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.41 E-value=3.3e-05 Score=89.65 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=94.2
Q ss_pred cccccchhhH---HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHh
Q 003325 184 MGIGMALGKN---KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (829)
Q Consensus 184 ~~vgr~~~~~---~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (829)
.++|.+..+. .+.+++. .+....+.++|++|+||||||+.+++ ....+|. .++... ....++ +.++..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~----~lna~~-~~i~di-r~~i~~ 99 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-ADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS----SLNAVL-AGVKDL-RAEVDR 99 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce----eehhhh-hhhHHH-HHHHHH
Confidence 4577776553 3444554 45666778999999999999999995 3333431 121110 111111 111111
Q ss_pred hcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCC--ChHhHHHhhhcCC-CceEEEEeecccc------c--cccceE
Q 003325 261 VSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVW--SLAVLEQLIFRVP-GCKTLVVSRFKFS------T--VLNDTY 329 (829)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~--~~~~~~~l~~~~~-gs~iivTtR~~~~------~--~~~~~~ 329 (829)
. ..... ..+++.+|||||++ +..+++.+.+... |..++|+++.... + .....+
T Consensus 100 a---------------~~~l~-~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~ 163 (725)
T PRK13341 100 A---------------KERLE-RHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLF 163 (725)
T ss_pred H---------------HHHhh-hcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccce
Confidence 0 00000 12467799999998 4456677776544 4444543332221 1 234679
Q ss_pred EccCCCHHHHHHHHHHhhcCC----CCCCCchhHHHHHHHHHHcCCchh
Q 003325 330 EVELLREDESLSLFCYSAFGQ----KTIPPSANENLVKQIVKKCKGLPL 374 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~----~~~~~~~~~~~~~~i~~~~~g~PL 374 (829)
.+++|+.++...++.+.+-.. ........++....|++.+.|..-
T Consensus 164 ~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 164 RLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 999999999999998765310 011112235567788888877643
No 59
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=8.8e-07 Score=80.30 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
-+++.|.|+.|+||||++++++.+.. -+..+++++..+.........++. +...+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~------------------~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLL------------------EYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhH------------------HHHHHhhc
Confidence 36899999999999999999995433 223455777664432111100011 11111122
Q ss_pred CCcEEEEEcCCCChHhHHHhhh----cCCCceEEEEeeccccc---------cccceEEccCCCHHHH
Q 003325 285 GSRCLVVLDDVWSLAVLEQLIF----RVPGCKTLVVSRFKFST---------VLNDTYEVELLREDES 339 (829)
Q Consensus 285 ~~~~LlVlDdv~~~~~~~~l~~----~~~gs~iivTtR~~~~~---------~~~~~~~l~~L~~~e~ 339 (829)
.++.+|+||++.....|..... ..+..+|++|+...... +....+++.+|+-.|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4678999999998877765543 44678999999877543 2335678888887764
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.2e-05 Score=84.14 Aligned_cols=185 Identities=12% Similarity=0.001 Sum_probs=104.1
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|-+...+.+.+++....-.+.+.++|++|+||||+|+.+++.-...+.+...+ |.|.+.. .+......-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~c-g~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPC-GECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCC-CcChhhH-HHhcCCCCceEEec
Confidence 346888888888888887555566779999999999999999986432222222112 3332110 00000000000000
Q ss_pred CCCCCCCCCCcchhhHHHHh-----hcCCcEEEEEcCCCCh--HhHHHhhhcC----CCceEEEEeec-cccc----ccc
Q 003325 263 GCDSMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSL--AVLEQLIFRV----PGCKTLVVSRF-KFST----VLN 326 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~LlVlDdv~~~--~~~~~l~~~~----~gs~iivTtR~-~~~~----~~~ 326 (829)
.. .....+.+...... ..+++-++|+|+++.. +.++.+.... +...+|++|.. ..+. ...
T Consensus 92 ~~----~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 92 AA----SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred cc----ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00 00011111111111 1345668999999854 4455555432 34455555543 3322 345
Q ss_pred ceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
..+++.+++.++..+.+...+-.... ...++.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 68999999999999999887644332 123457889999999988544
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.37 E-value=7.9e-06 Score=82.57 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=100.9
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcch
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPH 275 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 275 (829)
..-+.+.+.+.-+.+||++|+||||||+.+.+...-.+ .++|..|....-..-.++++++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 33344457888899999999999999999996433222 347777654332222344443321
Q ss_pred hhHHHHhhcCCcEEEEEcCCC--ChHhHHHhhhcC-CCceEEE--Eeeccccc------cccceEEccCCCHHHHHHHHH
Q 003325 276 WNLQIQSKLGSRCLVVLDDVW--SLAVLEQLIFRV-PGCKTLV--VSRFKFST------VLNDTYEVELLREDESLSLFC 344 (829)
Q Consensus 276 ~~~~~~~~~~~~~LlVlDdv~--~~~~~~~l~~~~-~gs~iiv--TtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~ 344 (829)
....+.++|..|++|.|+ +..|-+-|.+.. .|.-++| ||.+.... ....++.++.|..++...++.
T Consensus 215 ---~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 215 ---NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred ---HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 111236789999999998 556777777754 4666666 55555432 456789999999999999887
Q ss_pred Hhhc---CCCC---CCCc----hhHHHHHHHHHHcCCchh
Q 003325 345 YSAF---GQKT---IPPS----ANENLVKQIVKKCKGLPL 374 (829)
Q Consensus 345 ~~a~---~~~~---~~~~----~~~~~~~~i~~~~~g~PL 374 (829)
+..- .... +-+. -...+..-++..|.|-.-
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 7332 1111 1122 234567777888888654
No 62
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=2e-07 Score=91.32 Aligned_cols=210 Identities=19% Similarity=0.215 Sum_probs=134.8
Q ss_pred hhcCCCCceEEEccccCC----ccccCCC-cccCCccccceeeecccccCCCCCCccccCCCceEEeeecccccc---cc
Q 003325 586 IENMEKLRALIVINYSTS----NAALGNF-SVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNS---LD 657 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~----~~~~~~~-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~---~~ 657 (829)
+.-+..|.+|.+.+.... +.....+ -.+.-+++|..+.++.|.-..+..-...-+.|+++.......... .+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence 444566777766554211 1111111 123345677788888876554443333346677777654433211 00
Q ss_pred c------c----------ccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEE
Q 003325 658 Q------S----------VVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQIL 721 (829)
Q Consensus 658 ~------~----------~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 721 (829)
. . ..........|+.|+|++| .++.+..++.-++.++.|++|.|... .+ .++..|++|+.|
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~L 334 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLL 334 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEe
Confidence 0 0 0000112456888999997 57778888888899999999987643 33 347888999999
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCC--cccccccccCceeccchh
Q 003325 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~~~~~~ 799 (829)
++++| .+.++...-.++.+++.|.|++| .++.+ .+++.+-+|..|++++|+ +..+. ..+++||.|+.+.+.+|.
T Consensus 335 DLS~N-~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 335 DLSGN-LLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ecccc-hhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 99984 45555555567888999999984 55555 468888999999999998 56554 368889999998887775
Q ss_pred hhh
Q 003325 800 SWA 802 (829)
Q Consensus 800 ~~~ 802 (829)
...
T Consensus 411 l~~ 413 (490)
T KOG1259|consen 411 LAG 413 (490)
T ss_pred ccc
Confidence 443
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=5.3e-05 Score=85.33 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=107.0
Q ss_pred ccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
..++|.+..++++.+++.. +...+.+.|+|++|+||||+|+.++++. .|+ ++-++.++......+ ..+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~--~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE--VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC--EEEEcccccccHHHH-HHHHH
Confidence 3578999999999998863 2337889999999999999999999642 132 234555544333332 22322
Q ss_pred hhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH------hHHHhhhc--CCCceEEEEeeccccc------cc
Q 003325 260 FVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA------VLEQLIFR--VPGCKTLVVSRFKFST------VL 325 (829)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~------~~~~l~~~--~~gs~iivTtR~~~~~------~~ 325 (829)
....... . ...++-+||+|+++... .+..+... .++..||+|+.+..-. ..
T Consensus 87 ~~~~~~s------l---------~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 87 EAATSGS------L---------FGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HhhccCc------c---------cCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 2211100 0 01357799999998542 23444321 2345566666443211 33
Q ss_pred cceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 326 NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 326 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
...+++++++.++....+...+...... ..++....|++.++|-.-.+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 4678899999999998888776443321 2345789999999997665543
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.5e-06 Score=90.47 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=108.0
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc------------------------ccCC
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS------------------------YFNN 237 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------~F~~ 237 (829)
...+||-+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+.+.-.-.+ .|..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 3457899888888888887655667789999999999999999985321100 1111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhcC----CCc
Q 003325 238 RILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRV----PGC 311 (829)
Q Consensus 238 ~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~~----~gs 311 (829)
+++++......++++. ++++.+... -..++.-++|||+++.. +.++.|+... +..
T Consensus 95 -viEIdAas~~gVDdIR-eLie~~~~~-----------------P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v 155 (700)
T PRK12323 95 -YIEMDAASNRGVDEMA-QLLDKAVYA-----------------PTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHV 155 (700)
T ss_pred -ceEecccccCCHHHHH-HHHHHHHhc-----------------hhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCc
Confidence 1122222222222221 111111100 01356678999999954 5566666532 356
Q ss_pred eEEEEeecc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 312 KTLVVSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 312 ~iivTtR~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
++|++|.+. .+. .....++++.++.++..+.+.+.+-.+.. ...++....|++.++|.|..+..+
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666555544 333 44578999999999999988876643221 223456788999999998754433
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.9e-05 Score=85.34 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=103.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CC---------------eEEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN---------------RILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~---------------~~~wv~v 244 (829)
..++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.++..-...... ++ .+.++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 45689988888888888755556778999999999999999998532111111 00 0112211
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH--hHHHhhhc---C-CCceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIFR---V-PGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~---~-~gs~iivTtR 318 (829)
+....+.+ .+.+...+... ...+++-++|+|+++... .++.+... . +..++|++|.
T Consensus 96 ~~~~~v~~-ir~i~~~~~~~-----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 96 ASRTKVEE-MREILDNIYYS-----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred cccCCHHH-HHHHHHHHhcC-----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 11111211 12222221100 012456699999999553 45555542 2 3556676665
Q ss_pred ccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 319 FKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 319 ~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
+.. +. .....+++++++.++..+.+...+-..+. ...++.+..|++.++|.|-.+.
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 432 22 33468999999999999888776543221 1234577889999999886443
No 66
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=3.8e-07 Score=91.79 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=66.2
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC--CCHHHHHHHHHHhhcCCCCCCCCC
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
+.++.+..-.....++|+|++|+|||||++.+|++.... +|+..+ |+.+.+. .++.++++.+...+.......+..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~-~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYL-IVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEE-EEEEccCCCccHHHHHHHhccEEEEecCCCCHH
Confidence 344555444567789999999999999999999865444 888655 8887665 789999988844432221111100
Q ss_pred C-cc---hhhHHHHh--hcCCcEEEEEcCCCCh
Q 003325 272 V-IP---HWNLQIQS--KLGSRCLVVLDDVWSL 298 (829)
Q Consensus 272 ~-~~---~~~~~~~~--~~~~~~LlVlDdv~~~ 298 (829)
. .. ......+. ..++++++++|++...
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 0 00 11111111 2689999999999753
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=6e-06 Score=81.12 Aligned_cols=254 Identities=16% Similarity=0.148 Sum_probs=140.6
Q ss_pred ccccccchhhHHHHHHhhc----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIG----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKV 257 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i 257 (829)
..++|-+.-++++.=++.. .+.+--+.++|++|.||||||.-+++. ....+. ++.+... ...++ ..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k-----~tsGp~leK~gDl-aai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK-----ITSGPALEKPGDL-AAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE-----ecccccccChhhH-HHH
Confidence 4678887777776655542 256778999999999999999999963 333321 1111000 01111 111
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH--h------------HHHhhhcCCCce-----------
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--V------------LEQLIFRVPGCK----------- 312 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~------------~~~l~~~~~gs~----------- 312 (829)
+..+ ...=.|++|.++... . ++-+.+.+|++|
T Consensus 98 Lt~L-----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 98 LTNL-----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HhcC-----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 1111 223356778887431 1 111122345544
Q ss_pred EEEEeeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCC
Q 003325 313 TLVVSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQP 387 (829)
Q Consensus 313 iivTtR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~ 387 (829)
|=-|||..... .-.-+.+++.-+.+|-.++..+.+-.- .-.-.++.+.+|+++..|-|--+.-+-+.+|.-
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf- 230 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---GIEIDEEAALEIARRSRGTPRIANRLLRRVRDF- 230 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---CCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH-
Confidence 33588887765 223567888899999999998887321 122335689999999999997655444443320
Q ss_pred hhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHH
Q 003325 388 EMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAIL 467 (829)
Q Consensus 388 ~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l 467 (829)
. .......+.....+..+..|.+-=.+|+...+..+..+.-.+.+-++..+.+....-.+...-+++-+-|
T Consensus 231 ----a----~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPy- 301 (332)
T COG2255 231 ----A----QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPY- 301 (332)
T ss_pred ----H----HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHH-
Confidence 0 0111111111112234444555555667666666666655556666666665533211111123333444
Q ss_pred HHHhhcchhhhhhhc
Q 003325 468 VELSDRNLLKIVKDA 482 (829)
Q Consensus 468 ~~L~~~sli~~~~~~ 482 (829)
|+..+|++....+
T Consensus 302 --Liq~gfi~RTpRG 314 (332)
T COG2255 302 --LIQQGFIQRTPRG 314 (332)
T ss_pred --HHHhchhhhCCCc
Confidence 7889999877654
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=4.1e-06 Score=78.15 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC
Q 003325 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS 266 (829)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 266 (829)
|++.....+...+.. ...+.+.|+|++|+||||+|+.+++... .....++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~-~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 2 GQEEAIEALREALEL-PPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred chHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 666777777777753 3567889999999999999999996432 112345566665443322221111100
Q ss_pred CCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh-----HhHHHhhhc-------CCCceEEEEeeccc
Q 003325 267 MEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL-----AVLEQLIFR-------VPGCKTLVVSRFKF 321 (829)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~-----~~~~~l~~~-------~~gs~iivTtR~~~ 321 (829)
............++.++|+||++.. ..+...... ..+..||+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111112456789999999953 222222222 25778888887654
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.5e-05 Score=92.04 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=107.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCe---------------EEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNR---------------ILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~---------------~~wv~v 244 (829)
..+||-+..+..+.+++..+.-.+.+.++|+.|+||||+|+.+++.-.-.... +|+ ++++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 46789998888888888755455667899999999999999999532111110 110 111211
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhhc---CC-CceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIFR---VP-GCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~~---~~-gs~iivTtR 318 (829)
.....+..+ +.+...+.. ....+++-++|||+++. .+.++.|+.. .| ..++|++|.
T Consensus 96 as~~kVDdI-ReLie~v~~-----------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 96 ASRTKVDDT-RELLDNVQY-----------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred ccccCHHHH-HHHHHHHHh-----------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 111112221 222222110 01146778999999984 4556665553 23 466666655
Q ss_pred ccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 319 FKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 319 ~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+.. +. .....|++.+|+.++....+.+.+-... ....++.+..|++.++|.|--+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 543 22 3357899999999999998887653321 2234567889999999988644433
No 70
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=0.00012 Score=82.97 Aligned_cols=174 Identities=10% Similarity=0.086 Sum_probs=104.1
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc-------------------cCCeEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY-------------------FNNRILFL 242 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~~wv 242 (829)
...++|.+..+..|.+++..+.-.+.+.++|+.|+||||+|+.+...-..... |.. ++.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D-vlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD-LLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-eEEE
Confidence 34679999988999998876555678899999999999999998753111100 111 1122
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChH--hHHHhhh---c-CCCceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLA--VLEQLIF---R-VPGCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~--~~~~l~~---~-~~gs~iivT 316 (829)
.......+..+ ++++..... .-..+++-++|||+++... ....+.. . .+..++|++
T Consensus 94 daAs~~gVd~I-Relle~a~~-----------------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DAASNTGIDNI-REVLENAQY-----------------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred eccccCCHHHH-HHHHHHHHh-----------------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 22222222211 112211100 0013566789999998543 3334433 2 235677777
Q ss_pred eeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 317 SRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 317 tR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
|.+.. +. .....+++..++.++....+.+.+-+.+. ...++....|++.++|.+.-+.
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHH
Confidence 75543 22 33456788899999999988877643322 2235578899999999875443
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=2.2e-05 Score=84.82 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=102.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH--HHHHH--HHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV--EQLRA--KVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~--~~l~~--~i~ 258 (829)
..++|++..++.+..++.. +..+.+.++|++|+||||+|+.+++.- ....+...+..+++++.... ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~GtGKT~la~~~~~~l-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS-PNLPHLLVQGPPGSGKTAAVRALAREL-YGDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHh-cCcccccceEEechhhhhhcchhhhhcCcchh
Confidence 3467999888888888864 344568899999999999999998532 22223333334444321100 00000 000
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh------cCCcEEEEEcCCCCh--HhHHHhh---hc-CCCceEEEEeeccccc---
Q 003325 259 GFVSGCDSMEPNYVIPHWNLQIQSK------LGSRCLVVLDDVWSL--AVLEQLI---FR-VPGCKTLVVSRFKFST--- 323 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~LlVlDdv~~~--~~~~~l~---~~-~~gs~iivTtR~~~~~--- 323 (829)
..+... ..........++...+.. .+.+-+||+||++.. +....+. .. .+.+++|+||......
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 93 HFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 000000 000000111122211111 133458999999854 2222232 22 3357788777543211
Q ss_pred --cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 324 --VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 324 --~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
.....+++.+++.++...++...+-.... ...++....+++.++|.+-.+.
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 33457888999999999888876543222 1235578889999988765543
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.9e-05 Score=88.30 Aligned_cols=174 Identities=15% Similarity=0.090 Sum_probs=107.1
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFL 242 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv 242 (829)
-..++|.+...+.+..++..+.-.+.+.++|+.|+||||+|+.+++.-.... .|.. ++.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD-viEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID-LIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc-eEEe
Confidence 3467999988888988887655567889999999999999999885321111 1111 1122
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-CCceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivT 316 (829)
+.+....+.++ +.++..... ....+++-++|+|+|+.. .....+.. .. ++.++|++
T Consensus 93 DAAs~~~VddI-Reli~~~~y-----------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 93 DAASRTKVEDT-RELLDNVPY-----------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred cccccCCHHHH-HHHHHHHhh-----------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 22211222221 112111100 001356678999999954 44555543 22 35677777
Q ss_pred eeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 317 SRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 317 tR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
|.+.. +. .....+++.+++.++..+.+...+-+.+. ...++....|++.++|.+..+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 76543 21 44578999999999999988877644321 2334578889999999875443
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=1.1e-06 Score=92.96 Aligned_cols=135 Identities=21% Similarity=0.369 Sum_probs=89.1
Q ss_pred CccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCC
Q 003325 615 NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSL 694 (829)
Q Consensus 615 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L 694 (829)
.+.+++.|++++|.++.+|. + -.+|+.|.+++|.....++..+ .++|+.|++++|..+..+|+ +|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L------P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI------PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh------hhhhhheEccCccccccccc------cc
Confidence 45778888888888888882 2 2469999999887654444332 46899999999988887875 46
Q ss_pred cEEEecccc--ccccchhhccCCCCCCEEecccCCcC--CcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEee
Q 003325 695 KNLSVTNCH--SLQELPADIGKMKSLQILRLYACPHL--RTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKID 770 (829)
Q Consensus 695 ~~L~l~~~~--~~~~lp~~l~~l~~L~~L~l~~~~~l--~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 770 (829)
+.|+++.+. .+..+|. +|+.|.+.+++.. ..+|.. -.++|++|++++|..+ .+|..+. .+|+.|.
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 666676432 3455554 4566766543322 112211 1267999999998755 3554443 5889999
Q ss_pred ccccc
Q 003325 771 MRECS 775 (829)
Q Consensus 771 l~~~~ 775 (829)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88763
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.2e-07 Score=95.28 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=135.6
Q ss_pred cCCceEEEEEeccCCCccccC---hhhhcCCCCceEEEccccCCccccCC----------CcccCCccccceeeeccccc
Q 003325 563 EFPKAEVLILNFSSTEEYFLP---PFIENMEKLRALIVINYSTSNAALGN----------FSVCSNLTNLRSLWLEKVSI 629 (829)
Q Consensus 563 ~~~~l~~l~L~~~~~~~~~lp---~~~~~l~~Lr~L~l~~~~~~~~~~~~----------~~~l~~l~~L~~L~l~~~~i 629 (829)
.+|+++.+.|+.+......++ .-+.++..|+.|.+.||+.+...-.. .+-..+-++||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 467888888877766444444 34778999999999999876432221 12244568999999999998
Q ss_pred CCCCC-----CccccCCCceEEeeeccccccccccccccCCccccccccccccccccc----cCCccccCcCCCcEEEec
Q 003325 630 SQLPK-----SSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLM----KLPPSICGLQSLKNLSVT 700 (829)
Q Consensus 630 ~~lp~-----~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~l~ 700 (829)
..-+. .+...+.|+.+.++.|.+.......+..-+.++|+|++|||+.|.... .+...++.+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 75433 366678999999998887654443333345679999999999997653 234456788999999999
Q ss_pred ccccccc----chhhc-cCCCCCCEEecccCCcCCc----ccccccCCCCCCEEeccCCcC
Q 003325 701 NCHSLQE----LPADI-GKMKSLQILRLYACPHLRT----LPARICELVCLKYLNISQCVS 752 (829)
Q Consensus 701 ~~~~~~~----lp~~l-~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~l~~~~~ 752 (829)
+|..... +-..+ ...|+|+.|.+.+|..... +...+...+.|..|+|++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9975433 22222 3579999999999876532 233455689999999999854
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=1.4e-06 Score=79.53 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccccc--ccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTS--YFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (829)
+-+.+.|+|++|+|||++++.++++..... .....++|+.+....+...+...++.++...... .....+......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHH
Confidence 456889999999999999999996421100 0034567999988889999999999999765433 1112222233344
Q ss_pred hh-cCCcEEEEEcCCCCh---HhHHHhhh--cCCCceEEEEeec
Q 003325 282 SK-LGSRCLVVLDDVWSL---AVLEQLIF--RVPGCKTLVVSRF 319 (829)
Q Consensus 282 ~~-~~~~~LlVlDdv~~~---~~~~~l~~--~~~gs~iivTtR~ 319 (829)
.+ +.+..+||+|+++.. +.++.+.. ..++.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44 344579999999865 23444433 2456777777665
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-08 Score=99.06 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=123.9
Q ss_pred ceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccc-cCCCCC--CccccCCC
Q 003325 566 KAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVS-ISQLPK--SSIPLKKM 642 (829)
Q Consensus 566 ~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~lp~--~~~~l~~L 642 (829)
.+++++|+.+..+...+-..++.|++|+.|.+.++...+.. ...+.+-.+|+.|+++.++ ++...- -+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I---~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI---VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH---HHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 34455555444434444455788999999999887654432 2346677899999999864 443222 25678999
Q ss_pred ceEEeeeccccccccccccccCCcccccccccccccccc---ccCCccccCcCCCcEEEecccccccc-chhhccCCCCC
Q 003325 643 QKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL---MKLPPSICGLQSLKNLSVTNCHSLQE-LPADIGKMKSL 718 (829)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L 718 (829)
..|+|++|......-... +..--++|+.|+|+||... ..+..-...+++|..|||++|..++. ....|.+++.|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 999999998754331111 1123578999999998642 12222235789999999999987664 33567789999
Q ss_pred CEEecccCCcCCc-ccccccCCCCCCEEeccCCc
Q 003325 719 QILRLYACPHLRT-LPARICELVCLKYLNISQCV 751 (829)
Q Consensus 719 ~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~~~ 751 (829)
++|.++.|..+.. .--.+...|+|.+|++.+|-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999999976431 11246788999999998874
No 77
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0005 Score=73.59 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=158.6
Q ss_pred ccccccchhhHHHHHHhhc---CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCe-EEEEEeCCCCCHHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIG---RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNR-ILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~~wv~v~~~~~~~~l~~~i~ 258 (829)
..+.+|+.+++++...|.. +....-+.|+|.+|.|||+.++.++. ++....... +++++.-...+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3478999999999998854 23344499999999999999999994 555554433 56899999999999999999
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH-----hHHHhhhc--CCCceEEEEeecccc--c----
Q 003325 259 GFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-----VLEQLIFR--VPGCKTLVVSRFKFS--T---- 323 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~-----~~~~l~~~--~~gs~iivTtR~~~~--~---- 323 (829)
.+++... .......+......+.+ .++.+++|||+++... .+-.|... ...++|+|-.-.... .
T Consensus 95 ~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 9986222 11222333344445544 5789999999998532 22222211 124554443322221 1
Q ss_pred ------cccceEEccCCCHHHHHHHHHHhh---cCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHHH--hcCC---C-
Q 003325 324 ------VLNDTYEVELLREDESLSLFCYSA---FGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGAS--LREQ---P- 387 (829)
Q Consensus 324 ------~~~~~~~l~~L~~~e~~~Lf~~~a---~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~--l~~~---~- 387 (829)
.....+..++=+.+|-...+...+ |......+...+ ++..++..-+| -=.|+.++-.. ++.+ +
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~-lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLK-LIAALVAAESGDARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHH-HHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCC
Confidence 122346677888888888887665 344444444444 44444444444 34455554332 2221 1
Q ss_pred --hhHHHHHHHHhccCCCCccccchhHHHHHHHhhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHH--H-hcCCCHHH
Q 003325 388 --EMYWTSAKKRLSKGEPICESHENNLLDRMAISIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWV--E-IHDLDEEE 462 (829)
Q Consensus 388 --~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~--a-~~~~~~~~ 462 (829)
...-..+... --.....-....||.+.|-.+..++..- ..+....+..... . ..+.....
T Consensus 253 v~~~~v~~a~~~-------------~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~~~~~ 317 (366)
T COG1474 253 VSEDHVREAQEE-------------IERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRTSQRR 317 (366)
T ss_pred cCHHHHHHHHHH-------------hhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCchHHH
Confidence 1111111111 1122334457788888777765444432 3333333333222 1 11223344
Q ss_pred HHHHHHHHhhcchhhhhhh
Q 003325 463 AFAILVELSDRNLLKIVKD 481 (829)
Q Consensus 463 ~~~~l~~L~~~sli~~~~~ 481 (829)
..+++.+|...+++.....
T Consensus 318 ~~~ii~~L~~lgiv~~~~~ 336 (366)
T COG1474 318 FSDIISELEGLGIVSASLI 336 (366)
T ss_pred HHHHHHHHHhcCeEEeeec
Confidence 5567788888887764443
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=2.9e-05 Score=82.64 Aligned_cols=171 Identities=14% Similarity=0.130 Sum_probs=100.0
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcC
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (829)
.++|.+..++.+..++.. +....+.++|++|+||||+|+.+++.- ....|...++-.+.++..+...+ +.+.+.+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD-GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGIDVV-RNKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHHHH-HHHHHHHHh
Confidence 457877777777777653 344557799999999999999998531 22334333323333433333322 222222211
Q ss_pred CCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHh---hhcC-CCceEEEEeeccccc-----cccceEEcc
Q 003325 264 CDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQL---IFRV-PGCKTLVVSRFKFST-----VLNDTYEVE 332 (829)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l---~~~~-~gs~iivTtR~~~~~-----~~~~~~~l~ 332 (829)
.... . ..++.-+++||+++.. .....+ .... +.+++|+++...... .....++++
T Consensus 91 ~~~~-~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 91 KKVT-L-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred cccc-C-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 1000 0 0234668999999854 222333 2332 356777766543211 334678999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh
Q 003325 333 LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (829)
Q Consensus 333 ~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL 374 (829)
++++++....+...+-..+. ...++....|++.++|-.-
T Consensus 157 ~l~~~~l~~~L~~i~~~egi---~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKV---PYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 99999999888877643322 1224577889999988654
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.26 E-value=2.5e-05 Score=78.93 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=88.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
...+.+.|+|++|+|||+|++.+++. .... ...+.++.+..... ...++. +.
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~-~~~v~y~~~~~~~~---~~~~~~----------------------~~ 94 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAE--LSQR-GRAVGYVPLDKRAW---FVPEVL----------------------EG 94 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--HHhC-CCeEEEEEHHHHhh---hhHHHH----------------------HH
Confidence 34568999999999999999999963 2222 23455666642110 000111 11
Q ss_pred hcCCcEEEEEcCCCCh---HhHHHhh-----hcC-CC-ceEEEEeeccccc------------cccceEEccCCCHHHHH
Q 003325 283 KLGSRCLVVLDDVWSL---AVLEQLI-----FRV-PG-CKTLVVSRFKFST------------VLNDTYEVELLREDESL 340 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~---~~~~~l~-----~~~-~g-s~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~ 340 (829)
+. +--+|++||++.. ..|+... ... .| .++|+||+..... ....+++++++++++-.
T Consensus 95 ~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 95 ME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred hh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 11 1237899999753 3343222 111 34 4799999866322 23368999999999999
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 341 SLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 341 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+++.+.+.... -...+++..-|++.+.|..-++..+
T Consensus 174 ~~l~~~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 174 QALQLRARLRG---FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 99887664321 1223567888888888766555433
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.25 E-value=2.6e-05 Score=78.62 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
....+.|+|++|+|||+|++++++. ...... ++.++++.+ ....+.. ..+.+
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~-~~~y~~~~~------~~~~~~~-------------------~~~~l 91 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAA--AEQAGR-SSAYLPLQA------AAGRLRD-------------------ALEAL 91 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCC-cEEEEeHHH------hhhhHHH-------------------HHHHH
Confidence 3456999999999999999999863 333322 444665432 1111111 11111
Q ss_pred cCCcEEEEEcCCCCh---HhHHH-hhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003325 284 LGSRCLVVLDDVWSL---AVLEQ-LIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~~~-l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
.+.-+|||||++.. ..|+. +.. ...|..||+||+..... .....+++++++.++-.++
T Consensus 92 -~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 92 -EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred -hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 22348999999843 22322 111 12467799999875432 1245889999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+.+.+....- .-.++....|++.++|-.-.+
T Consensus 171 L~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 171 LRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 9987754321 223457788888888765544
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=4.8e-05 Score=84.60 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=102.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc-------CC---------------eEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-------NN---------------RIL 240 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------~~---------------~~~ 240 (829)
..++|-+.-+..+...+..+.-.+.+.++|+.|+||||+|+.+++.-...... .| .+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 45688887777777777654455788999999999999999998532111110 00 011
Q ss_pred EEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEE
Q 003325 241 FLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTL 314 (829)
Q Consensus 241 wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~ii 314 (829)
.++......+.++. .++..... .-..+++-++|+|+++.. ..+..+... . +.+.+|
T Consensus 101 eidaas~~~vd~Ir-~iie~a~~-----------------~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 101 EIDAASKTSVDDIR-RIIESAEY-----------------KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred EeeccCCCCHHHHH-HHHHHHHh-----------------ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 12221112222221 11111100 001356778999999953 456666542 2 345555
Q ss_pred E-Eeeccccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 315 V-VSRFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 315 v-TtR~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+ ||+...+. .....+++.+++.++....+...+-..+. ...++....|++.++|.+--+
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4 44433332 33467899999999999999888754332 223456788999999977544
No 82
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=4.8e-05 Score=80.77 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=104.9
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc----ccccccCCeEEEEE-eCCCCCHHHHHHHHH
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH----QVTSYFNNRILFLT-VSQSPNVEQLRAKVW 258 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~ 258 (829)
.++|-+..++.+.+.+..+.-.+...++|+.|+||||+|+.++..- ....|.+. ..|.. -+....++++. ++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~-~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI-IEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe-EEeccccCCCCCHHHHH-HHH
Confidence 3578777778888888765666788999999999999999998521 12234442 22433 22333444432 333
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCC--ChHhHHHhhhcC----CCceEEEEeeccccc-----cccc
Q 003325 259 GFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVW--SLAVLEQLIFRV----PGCKTLVVSRFKFST-----VLND 327 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~--~~~~~~~l~~~~----~gs~iivTtR~~~~~-----~~~~ 327 (829)
..+.... ..+++-++|+|+++ +.+.++.+.... +++.+|++|.+.... ....
T Consensus 83 ~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 83 EEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 3332111 12344455566554 566677776532 377888888655422 3457
Q ss_pred eEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 328 TYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 328 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
.+++.++++++....+.... . ...++.+..++..++|.|.-+..
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~-~------~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKY-N------DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHh-c------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999988776543 1 11133577889999998876543
No 83
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=1.2e-06 Score=91.62 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC--CHHHHHHHHHHhhcCCCCCCCCC
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP--NVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~--~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
++++++..-..-+-.+|+|++|+||||||+.+|++.... +|+..+ |+.+.+.+ ++.++++.+...+....... .
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~-~VvLIgER~~EVtdiqrsIlg~vv~st~d~--~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHL-IVLLIDERPEEVTDMQRSVKGEVVASTFDE--P 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEE-EEEEeCCchhHHHHHHHHhcCcEEEECCCC--C
Confidence 456666544566788999999999999999999864444 898765 99988877 77788887764332221111 1
Q ss_pred Ccchhh-------HHHHh-hcCCcEEEEEcCCCCh
Q 003325 272 VIPHWN-------LQIQS-KLGSRCLVVLDDVWSL 298 (829)
Q Consensus 272 ~~~~~~-------~~~~~-~~~~~~LlVlDdv~~~ 298 (829)
...+.. ..... ..+++++|++|++...
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111111 11111 2689999999999754
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.19 E-value=1.8e-05 Score=80.05 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=94.4
Q ss_pred hhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCC
Q 003325 190 LGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEP 269 (829)
Q Consensus 190 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~ 269 (829)
..++.+.+++. ......+.|+|++|+|||+||+.+++. ...... .+.+++++.-... ...++.
T Consensus 24 ~~~~~l~~~~~-~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~-~~~~i~~~~~~~~---~~~~~~---------- 86 (226)
T TIGR03420 24 ELLAALRQLAA-GKGDRFLYLWGESGSGKSHLLQAACAA--AEERGK-SAIYLPLAELAQA---DPEVLE---------- 86 (226)
T ss_pred HHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCC-cEEEEeHHHHHHh---HHHHHh----------
Confidence 34555666543 345678999999999999999999963 222222 2335554322110 011111
Q ss_pred CCCcchhhHHHHhhcCCcEEEEEcCCCChH---hH-HHhhh---c--CCCceEEEEeeccccc------------cccce
Q 003325 270 NYVIPHWNLQIQSKLGSRCLVVLDDVWSLA---VL-EQLIF---R--VPGCKTLVVSRFKFST------------VLNDT 328 (829)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~---~~-~~l~~---~--~~gs~iivTtR~~~~~------------~~~~~ 328 (829)
.+.+ .-+|||||++... .| +.+.. . ..+..+|+||+..... .....
T Consensus 87 ------------~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 87 ------------GLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------------hccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 1112 2389999998542 22 22322 1 2345888888754311 11357
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 003325 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 381 (829)
+++++++.++...++...+-... ....++....+++.+.|.|..+..+..
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 89999999999999887653221 122345778888889998887765543
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.19 E-value=0.00022 Score=76.27 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=100.9
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcC
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (829)
.++|++..++.+..++.. ...+.+.++|++|+||||+|+.+++.- ....+...++-++.+.......+...+ ..+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~-~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~~ 94 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE-KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWRENFLELNASDERGIDVIRNKI-KEFAR 94 (319)
T ss_pred HhcCcHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCccccceEEeccccccchHHHHHHH-HHHHh
Confidence 468999888888888864 344567999999999999999998632 222232211112222222222222222 22211
Q ss_pred CCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---c-CCCceEEEEeeccc-c-c---cccceEEcc
Q 003325 264 CDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVSRFKF-S-T---VLNDTYEVE 332 (829)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTtR~~~-~-~---~~~~~~~l~ 332 (829)
.... ....+-+|++|+++.. +....+.. . .+.+++|+++.... . . .....++++
T Consensus 95 ~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 95 TAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred cCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 1000 0123568999998743 23333332 2 33567777664332 1 1 234578999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 333 LLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 333 ~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+++.++....+...+-.... ...++....+++.++|.+.-+
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 99999998888877643322 223557888999999987654
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.5e-05 Score=83.07 Aligned_cols=185 Identities=12% Similarity=-0.023 Sum_probs=102.3
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|-+..+..+..++..+.-.+.+.++|+.|+||||+|+.+++.-. ...... ......+..-..+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~---~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIG---NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccC---ccccCCCcHHHHHHccCCccce
Confidence 456888888888888887544446789999999999999999985311 111100 0000001111111110000000
Q ss_pred CCCCCCCCCCcchhhHHHH-----hhcCCcEEEEEcCCCC--hHhHHHhhhc---CC-CceEEEEeec-cccc----ccc
Q 003325 263 GCDSMEPNYVIPHWNLQIQ-----SKLGSRCLVVLDDVWS--LAVLEQLIFR---VP-GCKTLVVSRF-KFST----VLN 326 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~LlVlDdv~~--~~~~~~l~~~---~~-gs~iivTtR~-~~~~----~~~ 326 (829)
.-. .......+.+....+ ...++.-++|+|+++. .+.++.+... .| ...+|.+|.. ..+. ...
T Consensus 94 EId-aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EID-AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eec-hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 000 000001111111111 1245677999999994 4567776653 23 3444444443 3332 445
Q ss_pred ceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhH
Q 003325 327 DTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (829)
Q Consensus 327 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 375 (829)
+.|.+..++.++..+.+.+.+-..+ -...++....|++.++|.+.-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCChHHH
Confidence 6799999999999888887764332 123456789999999998853
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.7e-05 Score=84.53 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=104.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc-------------------cccCCeEEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (829)
..++|-+..++.+...+..+...+.+.++|+.|+||||+|+.+++.-.-. +.|.. ++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d-lieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID-LIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 45689888888888888755556678899999999999999998521110 01221 12333
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTt 317 (829)
......++++ +.++..+.. ....+++-++|+|+++.. +.++.+.. ..| .+.+|.+|
T Consensus 95 aas~~gvd~i-r~ii~~~~~-----------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 95 AASRTGVEET-KEILDNIQY-----------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cccccCHHHH-HHHHHHHHh-----------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 2222222222 222222110 001356679999999843 44555554 333 45555555
Q ss_pred eccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHH
Q 003325 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIG 380 (829)
Q Consensus 318 R~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 380 (829)
.+.. +. .....+++.+++.++....+...+-..+ ....++....|++.++|.+- |+..+-
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4332 22 3457899999999998887776543322 12234577889999999664 444443
No 88
>PTZ00202 tuzin; Provisional
Probab=98.17 E-value=0.00026 Score=74.81 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=103.1
Q ss_pred CCcccccccchhhHHHHHHhhcC--CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 180 LGNLMGIGMALGKNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
.+...++||+.+...+...|... ...+++.|.|++|+|||||++.+... .. +. +++++.. +..++++.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~--qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP--AVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce--EEEECCC---CHHHHHHHH
Confidence 44568999999999999999632 34579999999999999999999942 22 22 3344444 679999999
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhh---cCCcEEEEEcCCC--Ch----HhHHHhhhcCCCceEEEEeeccccc-----
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSK---LGSRCLVVLDDVW--SL----AVLEQLIFRVPGCKTLVVSRFKFST----- 323 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~LlVlDdv~--~~----~~~~~l~~~~~gs~iivTtR~~~~~----- 323 (829)
+.+|+........+....++..+... ++++.+||+-=-. +. .+.-.+...-.-|.|++---.+...
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 99998633222122233333333322 3777787775322 21 1122233334467888766655543
Q ss_pred -cccceEEccCCCHHHHHHHHHHhh
Q 003325 324 -VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
..-.-|.+++++.++|.+.-.+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 223578999999999998876543
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=7.9e-05 Score=82.56 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=102.7
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc--c-CC---------------eEEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY--F-NN---------------RILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F-~~---------------~~~wv~v 244 (829)
..++|.+...+.+...+..+.-.+.+.++|++|+||||+|+.+++.-..... + ++ .+..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4578887777777777764444467899999999999999999853211100 0 00 1112333
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---CCCc-eEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VPGC-KTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~~gs-~iivTtR 318 (829)
+...+..++. .+....... ...+++-++|+|+++.. +..+.+... .++. .+|++|.
T Consensus 94 a~~~gid~iR-~i~~~~~~~-----------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 94 ASNRGIDEIR-KIRDAVGYR-----------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred cccCCHHHHH-HHHHHHhhC-----------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 2222232221 222221100 01345679999999854 344444442 3343 3333443
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC-chhHHHHHHHH
Q 003325 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG-LPLALKVIGAS 382 (829)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~ 382 (829)
. ..+. .....+++.+++.++....+...+..... ...++....|++.++| ++.|+..+-..
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 2222 34568899999999998888877643221 2234577888888865 46676666553
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=6.9e-05 Score=85.22 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=105.2
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCe---------------EEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNR---------------ILFLT 243 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~---------------~~wv~ 243 (829)
...+||-+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+++.-.-... .+|+ ++.+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 34678988888888888875544566789999999999999999853111100 0110 01121
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---cCC-CceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivTt 317 (829)
......++++ +++...+. .....+++-++|||+++. .+..+.+.. ..| ..++|.+|
T Consensus 95 aas~~~Vddi-R~li~~~~-----------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 95 AASRTKVEDT-RELLDNVQ-----------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred ccccCCHHHH-HHHHHHHH-----------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEec
Confidence 1111112111 12221110 001246677999999984 455666654 223 45666555
Q ss_pred eccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 318 R~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.+.. +. .....|++.+++.++....+.+.+-... ....++....|++.++|.+--+..+
T Consensus 157 t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 157 TDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5543 32 3357899999999999998887653222 1233457788999999988744433
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.13 E-value=7.8e-05 Score=72.76 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=89.6
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEEEeC-CCCCHHHH
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS-QSPNVEQL 253 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~-~~~~~~~l 253 (829)
.+.+.+..+.-...+.++|+.|+||||+|+.+...-.-.. .++... ++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH
Confidence 4555665444457899999999999999998874311110 111111 22211 11222222
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEEeeccc-cc---
Q 003325 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVSRFKF-ST--- 323 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTtR~~~-~~--- 323 (829)
+++...+.... ..+.+-++|+|+++.. +.++.+... .+.+.+|++|++.. +.
T Consensus 82 -~~i~~~~~~~~-----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 -RELVEFLSRTP-----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -HHHHHHHccCc-----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 22222221110 1245668999999854 334444432 23566666665442 21
Q ss_pred -cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhH
Q 003325 324 -VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (829)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 375 (829)
.....+++.+++.++..+.+... + ..++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~--g-------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ--G-------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc--C-------CCHHHHHHHHHHcCCCccc
Confidence 33468999999999998888776 1 1245788999999998853
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.7e-05 Score=84.06 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=105.3
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc-------------------cccCCeEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFL 242 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv 242 (829)
...+||-+..++.+.+++..+.-...+.++|+.|+||||+|+.+...-.-. +.|.. ++.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d-~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD-LFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-EEEE
Confidence 345789998889999998765556678999999999999999988532111 11221 2233
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---cC-CCceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RV-PGCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~~-~gs~iivT 316 (829)
+.+....++++ ++++..+... ...++.-++|+|+|+. .+..+.+.. .. +.+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33333333333 2233322111 0135666889999995 344555544 22 35666666
Q ss_pred eeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 317 SRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 317 tR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
|.+.. +. .....+++.+++.++....+...+-..+. ...++....|++.++|.+.-+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 54432 22 33467889999999887776655533221 1234567788999999875443
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=8.8e-05 Score=81.80 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=105.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc------------------cccccCCeEEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ------------------VTSYFNNRILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------------------~~~~F~~~~~wv~v 244 (829)
..+||-+.-++.+.+.+..+.-.+.+.++|+.|+||||+|+.++..-. +.......++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 456888877777777776544456899999999999999998874110 00111112334554
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTtR 318 (829)
+...++.++. .+........ ..+++-++|+|+++.. +..+.+... .+..++|++|.
T Consensus 93 as~~~vddIR-~Iie~~~~~P-----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYLP-----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhcc-----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 4444444432 2322221100 1245668999999843 445555442 23566666654
Q ss_pred cc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 319 FK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 319 ~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
.. .+. .....+++.+++.++....+...+...+. ...++....|++.++|.+-.+
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 33 222 44578899999999999998887754332 223457788999999877543
No 94
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=5.9e-05 Score=76.05 Aligned_cols=143 Identities=18% Similarity=0.218 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
...+.|+|+.|+|||.|++++++. .... ..++.|++..+ +.... ....+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~-~~~v~y~~~~~------~~~~~-------------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQR-GEPAVYLPLAE------LLDRG-------------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhC-CCcEEEeeHHH------HHhhh-------------------HHHHHhhh
Confidence 367899999999999999999863 2222 23455766532 11100 01111111
Q ss_pred CCcEEEEEcCCCCh---HhHHH-hhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHHH
Q 003325 285 GSRCLVVLDDVWSL---AVLEQ-LIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (829)
Q Consensus 285 ~~~~LlVlDdv~~~---~~~~~-l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (829)
+- =+||+||+... ..|+. +.. ...|..||+|++..... ....++++++++.++-..++
T Consensus 97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 11 26889999732 34433 222 12477899988865432 12357899999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
..++.... . ...+++..-|++++.|..-.+..+
T Consensus 176 ~~ka~~~~-~--~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRG-L--HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcC-C--CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 86664322 1 122457888888888876555443
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=3.4e-05 Score=77.08 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
.+.+.|+|++|+|||+|++.++... ++.+++.. .+...+...+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~------~~~~~~~~~~----------------------~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPN------EIGSDAANAA----------------------A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHH------HcchHHHHhh----------------------h
Confidence 4678999999999999999998531 11133332 1111111111 0
Q ss_pred CCcEEEEEcCCCCh----HhHHHhhhc--CCCceEEEEeeccccc------------cccceEEccCCCHHHHHHHHHHh
Q 003325 285 GSRCLVVLDDVWSL----AVLEQLIFR--VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 285 ~~~~LlVlDdv~~~----~~~~~l~~~--~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
. -+|++||++.. +.+-.+... -.|..||+|++..... ....++++++++.++-.+++.+.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 1 27888999632 222222221 2377899998854321 33468999999999999999988
Q ss_pred hcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 347 AFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 347 a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
+-... -...+++..-|++.+.|..-++..
T Consensus 166 ~~~~~---~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQ---LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcC---CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 74321 122356888888888887776654
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00011 Score=79.49 Aligned_cols=169 Identities=12% Similarity=0.086 Sum_probs=99.2
Q ss_pred cccccchhhHHHHHHhhcCC---------CceEEEEEcCCCCcHHHHHHHHhhccccc------------------cccC
Q 003325 184 MGIGMALGKNKVKEMVIGRD---------DLSVLGICGIGGSGKTTLALEVCRDHQVT------------------SYFN 236 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~ 236 (829)
.++|-+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+++.-.-. +.++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45788777888888886543 35678899999999999999987421100 0111
Q ss_pred CeEEEEEeC-CCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh----cCC
Q 003325 237 NRILFLTVS-QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF----RVP 309 (829)
Q Consensus 237 ~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~----~~~ 309 (829)
. +.++... ....+.++ +++.+.+.... ..+++-++|+|+++.. .....+.. ..+
T Consensus 86 D-~~~i~~~~~~i~i~~i-R~l~~~~~~~p-----------------~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 86 D-VRVVAPEGLSIGVDEV-RELVTIAARRP-----------------STGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred C-EEEeccccccCCHHHH-HHHHHHHHhCc-----------------ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1 1122111 11222222 22222221100 1345567888999843 33344433 233
Q ss_pred CceEEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 310 GCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 310 gs~iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+..+|++|.+.. +. .....+.+.+++.++..+.+.... + ..++.+..++..++|.|..+..+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 666776666643 22 335789999999999998886432 1 11346788999999999765443
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.3e-05 Score=83.98 Aligned_cols=174 Identities=10% Similarity=0.087 Sum_probs=103.3
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc------------------------ccCCe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS------------------------YFNNR 238 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------~F~~~ 238 (829)
..+||-+.-+..|.+++..+.-.+.+.++|+.|+||||+|+.+.+.-.-.. .+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D- 94 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD- 94 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc-
Confidence 456888777788888887655567889999999999999999964211100 1111
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhhc---CC-Cce
Q 003325 239 ILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIFR---VP-GCK 312 (829)
Q Consensus 239 ~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~~---~~-gs~ 312 (829)
+++++......++++ ++++...... -..++.-++|||+|+. .+.++.+... .| ..+
T Consensus 95 ~~eldaas~~~Vd~i-Reli~~~~~~-----------------p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 95 YTELDAASNRGVDEV-QQLLEQAVYK-----------------PVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLK 156 (618)
T ss_pred eeecCcccccCHHHH-HHHHHHHHhC-----------------cccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeE
Confidence 112222212222221 1122211100 0134556889999994 3456666553 23 456
Q ss_pred EEEEeecc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 313 TLVVSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 313 iivTtR~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
+|++|.+. .+. .....++++.++.++..+.+...+-..+. ...++....|++.++|.+.-+..
T Consensus 157 fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 157 FVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred EEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 66565443 222 44578999999999999888877643322 22345788899999997754443
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00013 Score=77.78 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=105.9
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc----cCCeEEEEEeCCCCCHHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY----FNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
...++|-+.....+...+..+.-...+.|+|+.|+||||+|..+.+. +-.+ +.... ...++..-...+.+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~----~~~~~~~c~~c~~i 95 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET----LADPDPASPVWRQI 95 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc----cCCCCCCCHHHHHH
Confidence 34679999888888888876666678999999999999999988852 2111 11100 00011111112222
Q ss_pred HHh-------hcCCCCCC-----CCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEE
Q 003325 258 WGF-------VSGCDSME-----PNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTL 314 (829)
Q Consensus 258 ~~~-------l~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~ii 314 (829)
... +....... ..-.++.+....+.+ .+++-++|+|+++.. ...+.+.. ..| ...+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 111 00000000 000112222222221 456778999999954 33444443 222 44544
Q ss_pred EEeecc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 315 VVSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 315 vTtR~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
++|... .+. .....+++.+++.++..+++....... ...++....+++.++|.|..+..+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----GSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444333 222 345789999999999999998743211 123456788999999999866544
No 99
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.06 E-value=1.5e-07 Score=96.66 Aligned_cols=254 Identities=19% Similarity=0.219 Sum_probs=139.5
Q ss_pred ccCCceEEEEEeccCCCccccC-hhhhcCCCCceEEEccccCCc-cccCCCcccCCccccceeeecccc-cCC--CCCCc
Q 003325 562 MEFPKAEVLILNFSSTEEYFLP-PFIENMEKLRALIVINYSTSN-AALGNFSVCSNLTNLRSLWLEKVS-ISQ--LPKSS 636 (829)
Q Consensus 562 ~~~~~l~~l~L~~~~~~~~~lp-~~~~~l~~Lr~L~l~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-i~~--lp~~~ 636 (829)
..+|+++.|.+.++.......- ..-..+++|++|++..|.... .... ..-..+++|++|+++.+. ++. +-.-.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk--~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK--YLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH--HHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 4567777665555543111111 122356777777776643211 1111 012356677777776653 111 11112
Q ss_pred cccCCCceEEeeeccccc------------------------cccccccccCCccccccccccccccccccCC-cc-ccC
Q 003325 637 IPLKKMQKISFVLCKINN------------------------SLDQSVVDLPKTLPCLTELTFDHCDDLMKLP-PS-ICG 690 (829)
Q Consensus 637 ~~l~~L~~L~L~~~~~~~------------------------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~-i~~ 690 (829)
..++.++.+.+.+|.-.+ ..+.....+...+..|+.|+.++|..++..+ .. ..+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 233334444444332111 0011111222346667777777776654332 11 235
Q ss_pred cCCCcEEEeccccccccchh-hc-cCCCCCCEEecccCCcCCc--ccccccCCCCCCEEeccCCcCCCCC-----ccccC
Q 003325 691 LQSLKNLSVTNCHSLQELPA-DI-GKMKSLQILRLYACPHLRT--LPARICELVCLKYLNISQCVSLSCL-----PQGIG 761 (829)
Q Consensus 691 l~~L~~L~l~~~~~~~~lp~-~l-~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~l-----p~~l~ 761 (829)
..+|+.|.+++|+..+..-. .+ .+.+.|+.+++..|..... +..--.+++.|+.|.+++|..++.. ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 67788888887775544321 11 3567788887777654432 2222346789999999998766543 22235
Q ss_pred CCccccEeeccccccCcc-CCcccccccccC---ceeccchhhhhhhhhhhhCCCceEEe
Q 003325 762 NLIRLEKIDMRECSQIWS-LPKSVNSLKSLR---QVICEEDVSWAWKDLEKTLPNLHVQV 817 (829)
Q Consensus 762 ~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~---~L~~~~~~~~~~~~l~~~lp~L~~~~ 817 (829)
.+..|+.+.+++|+.+.+ .-+.+..+++|+ ..+|.+.+......+..++|++++..
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 567899999999996542 222333444444 55577888888889999999998853
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=0.00019 Score=71.50 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccc-cCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
....+.|+|+.|+|||.|.+++++. ..+. -..++.+++. .++...+...+... .. ......
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~-------~~---~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIREFADALRDG-------EI---EEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHHHHHHHHTT-------SH---HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHHHHHHHHcc-------cc---hhhhhh
Confidence 3567899999999999999999963 3322 2345656544 34445554444321 11 112222
Q ss_pred hcCCcEEEEEcCCCCh---HhHHHhh-h---c--CCCceEEEEeeccccc------------cccceEEccCCCHHHHHH
Q 003325 283 KLGSRCLVVLDDVWSL---AVLEQLI-F---R--VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLS 341 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~---~~~~~l~-~---~--~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~ 341 (829)
+. .-=+|++||++.. ..|+... . . ..|.+||+|++..... ...-++++++++.++..+
T Consensus 95 ~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 22 3448899999853 2232221 1 1 2478999999766432 234579999999999999
Q ss_pred HHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 342 LFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 342 Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
++.+.+-...- ...++++.-|++.+.+..-.+.
T Consensus 174 il~~~a~~~~~---~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 174 ILQKKAKERGI---ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhCC---CCcHHHHHHHHHhhcCCHHHHH
Confidence 99988753322 1234577777777766554443
No 101
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00019 Score=80.47 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=102.6
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CC---------------eEEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN---------------RILFLT 243 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~---------------~~~wv~ 243 (829)
-..++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+++.-.-.+.. .| .+.++.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 345789999888888888755556789999999999999999998531111100 00 011222
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---cCC-CceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivTt 317 (829)
.+....+.++ +.+...+... ...+++-++|+|+++. .+.+..+.. ..| ...+|++|
T Consensus 95 aas~igVd~I-ReIi~~~~~~-----------------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 95 AASNNGVDEI-RNIIDNINYL-----------------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred cccccCHHHH-HHHHHHHHhc-----------------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 1111122221 1111111100 0122344699999985 345555554 233 44555444
Q ss_pred ecc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHH
Q 003325 318 RFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGA 381 (829)
Q Consensus 318 R~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 381 (829)
... .+. .....+++.+++.++....+...+-..+. ...++.+..+++.++|.+- |+..+-.
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 332 222 34568999999999999888876633221 1224567889999999664 4444443
No 102
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00034 Score=74.99 Aligned_cols=187 Identities=12% Similarity=0.030 Sum_probs=103.6
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc-cCCeEE---EEE--eCCCCCHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRIL---FLT--VSQSPNVEQLRA 255 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~~---wv~--v~~~~~~~~l~~ 255 (829)
...++|.+..++.+.+.+..+.-...+.++|+.|+||+|+|..+.+.- .... .....+ -.+ +...+. ..+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~~~~~c~---~c~ 93 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLAIDPDHP---VAR 93 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCccccccccccCCCCCh---HHH
Confidence 346789988888888888765556779999999999999998887421 1111 000000 000 000000 001
Q ss_pred HHHHhh-------cCC-CCCC----CCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhh---cCC-Cce
Q 003325 256 KVWGFV-------SGC-DSME----PNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCK 312 (829)
Q Consensus 256 ~i~~~l-------~~~-~~~~----~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~ 312 (829)
.+...- ... .... ..-.++++....+.+ .+++-++|+||++.. +....+.. ..| ++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 110000 000 0000 000112222222221 356778999999843 44444443 233 566
Q ss_pred EEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 313 TLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 313 iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+|++|.... +. .....+.+.+++.++..+++...... . .++....++..++|.|+.+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~-~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------L-PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 777776654 22 44578999999999999999876411 1 1122367899999999866544
No 103
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.01 E-value=6.9e-06 Score=80.09 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=31.4
Q ss_pred ccccchhhHHHHHHh--hcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 185 GIGMALGKNKVKEMV--IGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
++||+.+.+++...+ ......+.+.|+|++|+|||+|.++++..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999999999 33467799999999999999999999953
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00021 Score=80.77 Aligned_cols=172 Identities=10% Similarity=0.086 Sum_probs=102.1
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc-------------------cccCCeEEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT-------------------SYFNNRILFLT 243 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~~wv~ 243 (829)
..++|-+..++.+..++....-.+.+.++|+.|+||||+|+.+...-... +.|.. ++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d-~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD-LIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc-eeEee
Confidence 45688888888888888755555677899999999999999997432111 01111 11332
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTt 317 (829)
.+....++++ ++++...... -..+++-++|+|+++.. +..+.+... . +.+.+|.+|
T Consensus 95 ~~~~~~vd~i-r~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 95 AASNTQVDAM-RELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccccCCHHHH-HHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 2222222222 2232222110 01356678999999854 334544432 2 345666655
Q ss_pred eccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 318 R~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
.+.. .. .....++++.++.++....+...+-..+. ...++....|++.++|.+--+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4432 22 23467899999999998888766533221 223456788999999977533
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=7.8e-06 Score=63.03 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=28.7
Q ss_pred cccccccccccccccCC-ccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccC
Q 003325 669 CLTELTFDHCDDLMKLP-PSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYAC 726 (829)
Q Consensus 669 ~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 726 (829)
+|++|++++| .+..+| ..+.++++|++|++++|.....-|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 333443 34455566666666554432222344555555555555554
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.96 E-value=9.2e-05 Score=80.37 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=96.2
Q ss_pred cccccccchhhHHHHHHhhcC------------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCC
Q 003325 182 NLMGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (829)
...+.|++..++++.+.+... ...+-+.++|++|+|||++|+++++ .....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~------~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF------IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE------Eecch---
Confidence 346789999999998876321 2356699999999999999999995 333333 22221
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-------------H---hHHHhhh---c--
Q 003325 250 VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------A---VLEQLIF---R-- 307 (829)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-------------~---~~~~l~~---~-- 307 (829)
..+....... .........+.. ...+.+|++|+++.. + .+..+.. +
T Consensus 190 -~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 -SELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -HHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110000 001111122211 346789999998743 1 1222221 1
Q ss_pred -CCCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003325 308 -VPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 308 -~~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
..+.+||.||...... .....++++..+.++..++|..++.+....... ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 2356777777654321 124578999999999999999887554322111 2456777777653
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00041 Score=75.63 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccc------ccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV------TSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..++|.+...+.+.+.+..+.-.+.+.++|++|+||||+|+.+.+.-.- ...|...++-..-....+..++ ..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 3458998888888888875555678999999999999999999853111 1123222222221122222222 22
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEEeecc-ccc----cc
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSRFK-FST----VL 325 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtR~~-~~~----~~ 325 (829)
+...+.... ..+++-++++|+++.. ..++.+.. ..+ .+.+|++|... ... ..
T Consensus 96 l~~~~~~~p-----------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 96 LIDQVRIPP-----------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHhhcc-----------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 222221100 1234557999998743 34555543 223 44555555333 221 33
Q ss_pred cceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 326 NDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 326 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
...++.+++++++....+...+...+. ...++.+..+++.++|.+-.+
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 457899999999999888877644322 123457888889999866533
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00049 Score=76.71 Aligned_cols=175 Identities=12% Similarity=0.094 Sum_probs=105.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc-------------------cCCeEEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY-------------------FNNRILFLT 243 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~~wv~ 243 (829)
..++|-+...+.+...+..+.-.+++.++|+.|+||||+|+.+.+.- .... +...++...
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 45688888888888888755555677999999999999999877421 1100 111122332
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTt 317 (829)
......+.++...+ ...... ...+++-++|+|+++.. +..+.+... .+.+++|++|
T Consensus 93 aas~~gId~IReli-e~~~~~-----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 93 AASNRGIDDIRELI-EQTKYK-----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccccCHHHHHHHH-HHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 22222233332221 211100 00245668899999854 445555442 2356777666
Q ss_pred eccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 318 RFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 318 R~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.+.. +. .....+++.+++.++....+...+-..+. ...++.+..|++.++|.+.-+..+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 5542 11 34578999999999998888776543321 223567889999999988655443
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.92 E-value=0.00019 Score=76.59 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=82.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|.+...+.+..++..+.-..++.++|++|+||||+|+.+++. ... .+..++.+. .....+...+ ....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~--~~~----~~~~i~~~~-~~~~~i~~~l-~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE--VGA----EVLFVNGSD-CRIDFVRNRL-TRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH--hCc----cceEeccCc-ccHHHHHHHH-HHHH
Confidence 4568999999999999876555678888999999999999999963 221 223455444 2222222212 1111
Q ss_pred CCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh---Hh---HHHhhhc-CCCceEEEEeeccccc-----cccceEE
Q 003325 263 GCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL---AV---LEQLIFR-VPGCKTLVVSRFKFST-----VLNDTYE 330 (829)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~---~~---~~~l~~~-~~gs~iivTtR~~~~~-----~~~~~~~ 330 (829)
... ...+.+-+||+||++.. +. +..+... .+++++|+||...... .....+.
T Consensus 93 ~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 93 STV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred Hhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 000 00134557899999854 22 2222223 3467888888654321 2334677
Q ss_pred ccCCCHHHHHHHHHH
Q 003325 331 VELLREDESLSLFCY 345 (829)
Q Consensus 331 l~~L~~~e~~~Lf~~ 345 (829)
++..+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 777777777766543
No 110
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=9.9e-06 Score=62.46 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=25.2
Q ss_pred CCcEEEeccccccccch-hhccCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCC
Q 003325 693 SLKNLSVTNCHSLQELP-ADIGKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQC 750 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 750 (829)
+|++|++++|. +..+| ..+.++++|++|++++|.....-|..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555543 33333 34445555555555543332222223444444444444443
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00034 Score=78.91 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=105.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCe---------------EEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNR---------------ILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~---------------~~wv~v 244 (829)
..++|-+..++.+.+.+..+.-...+.++|+.|+||||+|+.+++.-.-.... .|. ++++.-
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 34578777777777777654446788899999999999999998532111100 000 112211
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhcC----CCceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFRV----PGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~~----~gs~iivTtR 318 (829)
.....++++ +.+.+.+.. ....+++-++|+|+++.. +.+..|.... +...+|++|.
T Consensus 96 a~~~~Id~i-R~L~~~~~~-----------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 96 ASNRGIDDA-KRLKEAIGY-----------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred ccccCHHHH-HHHHHHHHh-----------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 111112211 111111100 011356678999999854 4455555432 2455555554
Q ss_pred cc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch-hHHHHHHHHh
Q 003325 319 FK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP-LALKVIGASL 383 (829)
Q Consensus 319 ~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 383 (829)
.. .+. .....++++.++.++....+...+..... ...++.+..|++.++|.+ .|+..+...+
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43 322 33468899999999999888876644321 233557888999999965 6777776544
No 112
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=1.6e-05 Score=83.89 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=65.8
Q ss_pred HHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC--CCHHHHHHHHHHhhcCCCCCCCCCC-c
Q 003325 197 EMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNYV-I 273 (829)
Q Consensus 197 ~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~-~ 273 (829)
+++..-..-..++|+|++|.|||||++.+++.... ++|+..+ |+.+.+. .++.++++.+...+-......+... .
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v-~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~ 237 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVEL-IVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEE-EEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHH
Confidence 44433356678999999999999999999975433 3788766 8888865 7899999988655433322211111 0
Q ss_pred c---hhhHHHHh--hcCCcEEEEEcCCCCh
Q 003325 274 P---HWNLQIQS--KLGSRCLVVLDDVWSL 298 (829)
Q Consensus 274 ~---~~~~~~~~--~~~~~~LlVlDdv~~~ 298 (829)
. ......+. ..+++++|++|++...
T Consensus 238 ~va~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 0 01111111 2789999999999854
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.89 E-value=0.00056 Score=74.36 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=103.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc--------------------cccCCeEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT--------------------SYFNNRILFL 242 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~~wv 242 (829)
..++|.+..++.+.+.+..+.-.+.+.++|++|+||||+|+.+...-.-. .+++ +.++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~--~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD--VIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC--EEEe
Confidence 35689999999999888755556778999999999999999887431100 0222 1122
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivT 316 (829)
.-+......+ .+.+...+.... ..+++-++|+|+++.. .....+... . +.+.+|++
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 2221112211 122222221100 1244558889998754 444444432 2 34566666
Q ss_pred eeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 317 SRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 317 tR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
|.+.. .. .....+++.++++++..+.+...+-.... ...++.+..+++.++|.|..+...
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 64433 11 33457888999999998888876643221 122457888999999988766543
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00055 Score=78.04 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=104.1
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccC--------C---------------e
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--------N---------------R 238 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--------~---------------~ 238 (829)
...++|.+..++.+.+.+..+.-...+.++|+.|+||||+|+.+++.-....... | -
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCc
Confidence 3467999988888888887655567889999999999999999985321111110 0 0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCce
Q 003325 239 ILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCK 312 (829)
Q Consensus 239 ~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~ 312 (829)
++++.......+.++ +++...+... -..+++-++|+|+++.. +..+.|... .+.++
T Consensus 103 v~e~~a~s~~gvd~I-ReIie~~~~~-----------------P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~ 164 (598)
T PRK09111 103 VLEMDAASHTGVDDI-REIIESVRYR-----------------PVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVK 164 (598)
T ss_pred eEEecccccCCHHHH-HHHHHHHHhc-----------------hhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeE
Confidence 111111111112111 1111111000 01245567899999854 345555432 23566
Q ss_pred EEEEe-eccccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 313 TLVVS-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 313 iivTt-R~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
+|++| ....+. .....+++..++.++....+...+-.... ...++....|++.++|.+.-+..
T Consensus 165 fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 165 FIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 66555 333322 34568899999999999998877643321 22345788899999998865543
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00035 Score=76.57 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=99.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEE-eCCCCCHHHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT-VSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~~~l 261 (829)
..++|.+.-++.+..++..+.-.+.+.++|+.|+||||+|+.+++.-.-...+...- |.. +..+++.=...+.+...-
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~-~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDAD-YLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccc-ccccCCCCCCCCHHHHHHhcCC
Confidence 456888877788888876544456688999999999999999885321111110000 000 000000000000000000
Q ss_pred cCC--C-CCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEEEEe-eccccc---
Q 003325 262 SGC--D-SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVS-RFKFST--- 323 (829)
Q Consensus 262 ~~~--~-~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTt-R~~~~~--- 323 (829)
... . ........+.+....+.+ .+++-++|+|+++.. +.++.+... . +.+.+|++| +...+.
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 000 0 000000111111111111 345668899999854 455555542 2 355655555 322222
Q ss_pred -cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 324 -VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 324 -~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
.....+++.++++++..+.+...+-... ....++.+..+++.++|.+--+.
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2346788999999998888876653221 12335688999999999775443
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00049 Score=77.94 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=103.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CC-----------------eEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN-----------------RILFL 242 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----------------~~~wv 242 (829)
..++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++..-.-.... +| .++.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 45789888888888888765556678999999999999999998531111100 00 01122
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---cCC-CceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---RVP-GCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~~~-gs~iivT 316 (829)
.......+.++ +++...+.. .-..+++-++|+|+++. .+..+.|.. ..| ...+|++
T Consensus 93 daas~~gvd~i-Rel~~~~~~-----------------~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 93 DAASHGGVDDT-RELRDRAFY-----------------APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred ccccccCHHHH-HHHHHHHHh-----------------hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 21111122221 111111100 00134566889999984 345555544 333 4555544
Q ss_pred e-eccccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHHH
Q 003325 317 S-RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVIGAS 382 (829)
Q Consensus 317 t-R~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 382 (829)
| ....+. .....+++..++.++..+.+...+-.... ...++....|++.++|.+- |+..+-.+
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 333322 34578999999999998888776543321 1234567888999999774 44544443
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.86 E-value=0.0003 Score=71.03 Aligned_cols=145 Identities=16% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
...+.+.|+|++|+|||+||+.+++.. ..... .+.+++..... .. + ..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~--~~~~i~~~~~~------~~----~-------------------~~ 87 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA-SYGGR--NARYLDAASPL------LA----F-------------------DF 87 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC--cEEEEehHHhH------HH----H-------------------hh
Confidence 455788999999999999999999632 12222 23344433211 00 0 00
Q ss_pred hcCCcEEEEEcCCCChH--hHHHhhh---c--CCCc-eEEEEeeccccc-----------cccceEEccCCCHHHHHHHH
Q 003325 283 KLGSRCLVVLDDVWSLA--VLEQLIF---R--VPGC-KTLVVSRFKFST-----------VLNDTYEVELLREDESLSLF 343 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~~--~~~~l~~---~--~~gs-~iivTtR~~~~~-----------~~~~~~~l~~L~~~e~~~Lf 343 (829)
....-+||+||++... ..+.+.. . ..+. .||+|++..... .....++++++++++-..++
T Consensus 88 -~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 -DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred -cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 1123378899997432 2222222 1 1233 366666643211 11357899999998877777
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHh
Q 003325 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASL 383 (829)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 383 (829)
.+.+-... -...++....+++.+.|.+..+..+-..+
T Consensus 167 ~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 65432211 22335678888889999998887665544
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00048 Score=81.27 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=100.9
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CC-----------------eEEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NN-----------------RILFL 242 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----------------~~~wv 242 (829)
..+||.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+.+...-.... .| .++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 45689888888888888755555678999999999999999998532211110 01 01122
Q ss_pred EeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEE
Q 003325 243 TVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVV 316 (829)
Q Consensus 243 ~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivT 316 (829)
+-.....++++. ++...+. ..-..+++-++|||+++.. +.++.|+. ..+ .+.+|++
T Consensus 95 daas~~~Vd~iR-~l~~~~~-----------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 95 DAASHGGVDDAR-ELRERAF-----------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred cccccCCHHHHH-HHHHHHH-----------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 221112222221 1111110 0012355667889999843 44555544 333 4555555
Q ss_pred eec-cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 317 SRF-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 317 tR~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
|.+ ..+. .....|++..++.++..+.+.+.+-..+. ...++....|++.++|.+..+
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 533 3332 34578999999999988888765432221 123446788999999988433
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00072 Score=77.59 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=100.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc-----CC-----------eEEEEEeCC
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-----NN-----------RILFLTVSQ 246 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~-----------~~~wv~v~~ 246 (829)
..++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.++..- ...+. +| .++++....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 45689888888888888765566778899999999999999987421 11110 00 011111111
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---CC-CceEEE-Eeec
Q 003325 247 SPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKTLV-VSRF 319 (829)
Q Consensus 247 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~~-gs~iiv-TtR~ 319 (829)
...+.+ .+++...+... ...+++-++|+|+++.. +.+..+... .| ...+|+ |++.
T Consensus 97 n~~vd~-IReLie~~~~~-----------------P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 97 NNGVDE-IRELIENVKNL-----------------PTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCHHH-HHHHHHHHHhc-----------------hhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 111111 11121111100 01356668899999843 456565542 23 344444 4433
Q ss_pred cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 003325 320 KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVI 379 (829)
Q Consensus 320 ~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 379 (829)
..+. .....+++.+++.++....+...+-..+. ...++.+..+++.++|.+. |+..+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332 33568999999999998888775533221 1224568889999999765 44443
No 120
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.83 E-value=0.00024 Score=81.90 Aligned_cols=195 Identities=12% Similarity=-0.011 Sum_probs=99.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccC--CeEEEEEeCCC---CCHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--NRILFLTVSQS---PNVEQLRAKV 257 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~~wv~v~~~---~~~~~l~~~i 257 (829)
+.++|++..+..+.+.+. ......+.|+|++|+||||+|+.+++.......++ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia-~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA-SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 457899988888877764 34566799999999999999999986543333221 11125554321 1222221111
Q ss_pred HH---------------hhcCCCC--------------CCCCC-Ccc-hhhHHHHhhcCCcEEEEEcCCCCh--HhHHHh
Q 003325 258 WG---------------FVSGCDS--------------MEPNY-VIP-HWNLQIQSKLGSRCLVVLDDVWSL--AVLEQL 304 (829)
Q Consensus 258 ~~---------------~l~~~~~--------------~~~~~-~~~-~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l 304 (829)
+. ..+.... .+..+ ... ......+.+..+++.++-|+.|.. ..|+.+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11 1000000 00000 000 111222334556666665555432 234444
Q ss_pred hhc----CCCceEEE--Eeeccccc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003325 305 IFR----VPGCKTLV--VSRFKFST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 305 ~~~----~~gs~iiv--TtR~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
... .+...|+| ||++.... .....+.+.+++.++.+.++.+.+-.... ...+++...|.+++..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v---~ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV---HLAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHCCCcHH
Confidence 321 22334444 55544321 22346788999999999999987642211 122345555555554434
Q ss_pred hHHHHHHH
Q 003325 374 LALKVIGA 381 (829)
Q Consensus 374 Lai~~~~~ 381 (829)
-|+..++.
T Consensus 390 raln~L~~ 397 (615)
T TIGR02903 390 KAVNILAD 397 (615)
T ss_pred HHHHHHHH
Confidence 45544443
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00093 Score=76.92 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=101.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.+++.-.....+.. + ..++.-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~---~----~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK---G----RPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---C----CCCccCHHHHHHhcCCC
Confidence 4578988888888888875555567789999999999999999853211111000 0 00011111111111100
Q ss_pred CCC-CCC--CCCCcchhhHHHHh-----hcCCcEEEEEcCCCCh--HhHHHhhhc---C-CCceEEEEeeccc-cc----
Q 003325 263 GCD-SME--PNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSL--AVLEQLIFR---V-PGCKTLVVSRFKF-ST---- 323 (829)
Q Consensus 263 ~~~-~~~--~~~~~~~~~~~~~~-----~~~~~~LlVlDdv~~~--~~~~~l~~~---~-~gs~iivTtR~~~-~~---- 323 (829)
... ..+ .....+.+....+. ..+++-++|+|+++.. +..+.|... . +.+.+|++|.... +.
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 000 000 00001111111111 1245678999999844 445555542 2 3556665554332 22
Q ss_pred cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 324 VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 324 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
.....++++.++.++....+...+...+. ...++.+..+++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33467889999999998888877643321 12345788999999998865543
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00041 Score=76.80 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
...+.|+|++|+|||+||+++++. -.+.+...++.|++. .++...+...+... .... ..+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~-l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~~---f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY-VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLNE---FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH-HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHHH---HHHHHH
Confidence 456999999999999999999963 222233445666654 34455555444211 1111 111222
Q ss_pred CCcEEEEEcCCCCh---HhH-HHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHHH
Q 003325 285 GSRCLVVLDDVWSL---AVL-EQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (829)
Q Consensus 285 ~~~~LlVlDdv~~~---~~~-~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (829)
.+.-+|++||++.. ..+ +.+.. .-.|..||+||...... ...-++++++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999843 111 12211 12356788888533211 22347889999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 344 CYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
.+.+-...- ...+++...|++.+.|..-.+
T Consensus 273 ~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHG---ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCC---CCCHHHHHHHHhccccCHHHH
Confidence 888743221 123557888888888765444
No 123
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=4e-06 Score=92.85 Aligned_cols=172 Identities=22% Similarity=0.245 Sum_probs=79.1
Q ss_pred hhcCCCCceEEEccccCCccccCCCcc-cCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccC
Q 003325 586 IENMEKLRALIVINYSTSNAALGNFSV-CSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLP 664 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 664 (829)
+..+++|..|++.+|.... +.. +..+++|++|++++|.|+++. ++..+..|+.|++++|.+...-. .
T Consensus 91 l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~------~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG------L 158 (414)
T ss_pred cccccceeeeeccccchhh-----cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC------C
Confidence 4455566666665554321 122 445666666666666666553 23444556666666555432111 1
Q ss_pred CccccccccccccccccccCCcc-ccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccccccCCC--C
Q 003325 665 KTLPCLTELTFDHCDDLMKLPPS-ICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPARICELV--C 741 (829)
Q Consensus 665 ~~~~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~--~ 741 (829)
..+++|+.+++++|.. ..+... ...+.+|+.+.+.+|..... ..+..+..+..+++..|.....- ++..++ +
T Consensus 159 ~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~ 233 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLH 233 (414)
T ss_pred ccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHH
Confidence 1255555555655532 222221 34555555555555432111 12222222333333332211111 111122 2
Q ss_pred CCEEeccCCcCCCCCccccCCCccccEeeccccc
Q 003325 742 LKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 742 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 775 (829)
|+.+.+++| .+...+..+..+..+..|++.+|.
T Consensus 234 L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGN-RISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccC-ccccccccccccccccccchhhcc
Confidence 666666664 333443456666667777776665
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.0005 Score=76.14 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...+.|+|..|+|||+|++++++. +.. +-..++++++. .++...+...+.... .......+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~--------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSG------DEFARKAVDILQKTH--------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 457899999999999999999962 222 22234444433 345555555543210 1111222222
Q ss_pred cCCcEEEEEcCCCCh---HhH-HHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003325 284 LGSRCLVVLDDVWSL---AVL-EQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~-~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
.+.-+||+||+... +.+ +.+.. ...|..||+|+...... ...-++.+++++.++-.++
T Consensus 205 -~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 -CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred -ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 23458999999743 122 22322 12356788887654311 2345788999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 003325 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (829)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 381 (829)
+.+.+-... ......+++..-|++.++|.|-.+..+..
T Consensus 284 L~~~~~~~g-l~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQN-IKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcC-CCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 998874322 11133466889999999999987765543
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.77 E-value=0.00022 Score=84.52 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=84.1
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc---cccccc-CCeEEEEEeCCCCCHHHHHHHHHH
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---QVTSYF-NNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.++..- .+...+ ...++.++.+ .+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l~a---- 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SLLA---- 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HHhh----
Confidence 5799999999999988754 34456799999999999999998531 111112 2334333321 1110
Q ss_pred hhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-----------HhHHHhhhcCC-C-ceEEEEeeccc----
Q 003325 260 FVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-----------AVLEQLIFRVP-G-CKTLVVSRFKF---- 321 (829)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-----------~~~~~l~~~~~-g-s~iivTtR~~~---- 321 (829)
+.. ...+..+.+...+... ..++.+|++|+++.. +.-+-+.+... | -++|-+|....
T Consensus 252 ---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 252 ---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 000 0001111222333322 345789999999832 12233444332 3 24444444311
Q ss_pred ----cc--cccceEEccCCCHHHHHHHHHHhh
Q 003325 322 ----ST--VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 322 ----~~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.+ ...+.++++.++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 12 334678999999999999998654
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.75 E-value=0.001 Score=67.74 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=109.7
Q ss_pred hHHHHHHhhcC--CCceEEEEEcCCCCcHHHHHHHHhhccccccccC---CeEEEEEeCCCCCHHHHHHHHHHhhcCCCC
Q 003325 192 KNKVKEMVIGR--DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN---NRILFLTVSQSPNVEQLRAKVWGFVSGCDS 266 (829)
Q Consensus 192 ~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 266 (829)
.+++.+++... ....-+.|+|.+|.|||+++++++..+-....=+ .-|+.+.....++...+...|+.+++....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 34556666543 3456689999999999999999996532221101 125567778889999999999999987653
Q ss_pred CCCCCCcchhh-HHHHhh-cCCcEEEEEcCCCCh---------H---hHHHhhhcCCCceEEEEeeccccc--------c
Q 003325 267 MEPNYVIPHWN-LQIQSK-LGSRCLVVLDDVWSL---------A---VLEQLIFRVPGCKTLVVSRFKFST--------V 324 (829)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~-~~~~~LlVlDdv~~~---------~---~~~~l~~~~~gs~iivTtR~~~~~--------~ 324 (829)
... ...... .....+ .-+-=+||+|++++. + .++.+.....=+-|.|-|++...+ .
T Consensus 126 ~~~--~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 126 PRD--RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred CCC--CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 322 222222 222333 345568899999863 1 123332334455666666665433 2
Q ss_pred ccceEEccCCCH-HHHHHHHHHhh--cCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 325 LNDTYEVELLRE-DESLSLFCYSA--FGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 325 ~~~~~~l~~L~~-~e~~~Lf~~~a--~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
-..++.++.-.. ++...|+.... ..-..+..-..++++..|...++|+.--+.
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 334566666443 35555543322 111222333456799999999999875544
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.73 E-value=0.00028 Score=76.90 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=92.9
Q ss_pred cccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCC
Q 003325 182 NLMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (829)
...+.|++..++++.+.+.. -...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~------~i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT------FIRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC------EEEeeh---
Confidence 34678999999999887632 134667999999999999999999953 2222 222221
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-------------Hh---HHHhhhcC----
Q 003325 250 VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-------------AV---LEQLIFRV---- 308 (829)
Q Consensus 250 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-------------~~---~~~l~~~~---- 308 (829)
..+. ....+. .........+.. ...+.+|++||++.. +. +..+....
T Consensus 199 -~~l~----~~~~g~-------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 -SELV----QKFIGE-------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred -HHHh----Hhhccc-------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 110000 011111122211 356789999999853 11 12222111
Q ss_pred --CCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003325 309 --PGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 309 --~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
.+..||.||...... .....++++..+.++-.++|+.+..+....... ....+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCC
Confidence 245666666554321 123578999999999999999876443322111 235566666664
No 128
>PRK06620 hypothetical protein; Validated
Probab=97.72 E-value=0.0003 Score=69.72 Aligned_cols=128 Identities=11% Similarity=-0.079 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (829)
+.+.|+|++|+|||+|++.+++... . . ++... +.. . . .. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~-~~~~~--~~~----~----------------------~---~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----Y-IIKDI--FFN----E----------------------E---IL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----E-Ecchh--hhc----h----------------------h---HH-h
Confidence 6789999999999999999885321 1 1 22100 000 0 0 00 1
Q ss_pred CcEEEEEcCCCChHh--HHHhhh--cCCCceEEEEeeccccc----------cccceEEccCCCHHHHHHHHHHhhcCCC
Q 003325 286 SRCLVVLDDVWSLAV--LEQLIF--RVPGCKTLVVSRFKFST----------VLNDTYEVELLREDESLSLFCYSAFGQK 351 (829)
Q Consensus 286 ~~~LlVlDdv~~~~~--~~~l~~--~~~gs~iivTtR~~~~~----------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~ 351 (829)
..-+|++||++...+ +-.+.. .-.|..||+|++..... ...-++++++++.++-..+..+.+-...
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 234788999984322 112211 13477899998866542 2234799999999998888877763211
Q ss_pred CCCCchhHHHHHHHHHHcCCchhHH
Q 003325 352 TIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
-.-.+++..-|++.+.|..-.+
T Consensus 165 ---l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 ---VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred ---CCCCHHHHHHHHHHccCCHHHH
Confidence 1122457777888777654443
No 129
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00029 Score=70.40 Aligned_cols=175 Identities=16% Similarity=0.150 Sum_probs=110.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH--HHh
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV--WGF 260 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i--~~~ 260 (829)
..++|-+..+.-+.+.+.. ....+...+||+|.|||+-|+.++..-.-.+.|++++.=.++|...+..-+-.++ +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fak 114 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAK 114 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHH
Confidence 4567777777777777765 6788999999999999999999986544457788888666777654443221111 111
Q ss_pred hcCCCCCCCCCCcchhhHHHHhhcCCc-EEEEEcCCCCh--HhHHHhhhc---CC-CceEE-EEeeccccc----cccce
Q 003325 261 VSGCDSMEPNYVIPHWNLQIQSKLGSR-CLVVLDDVWSL--AVLEQLIFR---VP-GCKTL-VVSRFKFST----VLNDT 328 (829)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~LlVlDdv~~~--~~~~~l~~~---~~-gs~ii-vTtR~~~~~----~~~~~ 328 (829)
+........ . ...++ -.+|||++++. +.|..+... ++ .++.| ||+--..+- ....-
T Consensus 115 l~~~~~~~~--~----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 115 LTVLLKRSD--G----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred Hhhcccccc--C----------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHH
Confidence 111110000 0 01223 36789999854 678777652 33 34444 443333222 34456
Q ss_pred EEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003325 329 YEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
|..++|.+++..+-+...+-.++. ....+..+.|++.++|--
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDGDL 224 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcH
Confidence 889999999999988888755443 223557889999998853
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.69 E-value=0.00031 Score=83.84 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=94.2
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc------cCCeEEEEEeCCCCCHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY------FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..++||+.++.++++.|... ...-+.++|++|+||||+|+.+++. +... ....++.+.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhc-------
Confidence 46799999999999988744 4445569999999999999999953 2211 122333333331000
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH-------hHH---HhhhcCC-C-ceEEEEeeccc-
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA-------VLE---QLIFRVP-G-CKTLVVSRFKF- 321 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~-------~~~---~l~~~~~-g-s~iivTtR~~~- 321 (829)
+.. ...+....++..+... .+++++|++|+++... +-+ -+.+... | -++|-||....
T Consensus 257 ------g~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 ------GAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred ------ccc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 000 0000111122222222 2568999999987531 111 2344332 3 45555555421
Q ss_pred -------cc--cccceEEccCCCHHHHHHHHHHhhcC-CCCCCCchhHHHHHHHHHHcCC
Q 003325 322 -------ST--VLNDTYEVELLREDESLSLFCYSAFG-QKTIPPSANENLVKQIVKKCKG 371 (829)
Q Consensus 322 -------~~--~~~~~~~l~~L~~~e~~~Lf~~~a~~-~~~~~~~~~~~~~~~i~~~~~g 371 (829)
.+ ...+.+.+++++.++..+++....-. +....-...++....+++.+.+
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 12 34468999999999999997544311 1111111234456666666654
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0019 Score=74.29 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=103.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc---------------------cccccCCeEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---------------------VTSYFNNRILF 241 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~~w 241 (829)
..++|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+...-. ...+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eEE
Confidence 456898888888888887655567789999999999999998775311 011232 123
Q ss_pred EEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEE
Q 003325 242 LTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLV 315 (829)
Q Consensus 242 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iiv 315 (829)
+.......+.++. .+..++.... ..+++=++|+|+++.. +.++.|.. ..| .+.+|+
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3332222233332 2222221110 1234557899999854 44555554 333 455555
Q ss_pred Eeec-cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 316 VSRF-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 316 TtR~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+|.. ..+. .....+++.+++.++....+...+-..+. ...++.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4433 3322 44578999999999999888876643321 123457888999999976543
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0022 Score=71.59 Aligned_cols=176 Identities=12% Similarity=0.077 Sum_probs=99.9
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccc---ccccCCe---------------EEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV---TSYFNNR---------------ILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~~~---------------~~wv~v 244 (829)
..++|-+.-...+.+.+..+.-.+.+.++|+.|+||||+|+.++..-.- ....+|+ ++++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4568888888888888876555667789999999999999998742110 0001111 112222
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTtR 318 (829)
+....+.++ +.+...+... -..+++-++|+|+++.. +..+.+.. ..| ...+|++|.
T Consensus 96 as~~gvd~i-r~I~~~~~~~-----------------P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 96 ASNRGIDDI-RALRDAVSYT-----------------PIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred ccCCCHHHH-HHHHHHHHhC-----------------cccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 111112111 1111111000 01356679999999844 34444443 223 445554443
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
. ..+. .....+++.+++.++....+...+-.... ...++.+..+++.++|.+..+...
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2221 33467899999999988888776533221 223457788899999977644433
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0016 Score=72.22 Aligned_cols=174 Identities=14% Similarity=0.125 Sum_probs=99.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc---------------------ccCCeEEE
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS---------------------YFNNRILF 241 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------~F~~~~~w 241 (829)
..++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+.+.-.-.. +++ +.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d--~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD--VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc--eEE
Confidence 456898888888888887544457788999999999999999875211100 111 111
Q ss_pred EEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-CCceEEE
Q 003325 242 LTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLV 315 (829)
Q Consensus 242 v~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-~gs~iiv 315 (829)
+.-......+++. .+.+.+.. ....+++-++|+|+++.. +..+.+.. .. +...+|+
T Consensus 95 i~g~~~~gid~ir-~i~~~l~~-----------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDGASHRGIEDIR-QINETVLF-----------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eeccccCCHHHHH-HHHHHHHh-----------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 1111111122211 11111100 001355678899998843 33344333 22 3555666
Q ss_pred Eeecc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 003325 316 VSRFK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKVI 379 (829)
Q Consensus 316 TtR~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 379 (829)
+|... .+. .....++++++++++....+...+-+.+. ...++.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 65332 222 34567899999999998888776533221 1234578889999999764 44433
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0021 Score=73.51 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=99.5
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEE-eCCCCCHHHHHHHHHHh
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT-VSQSPNVEQLRAKVWGF 260 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~-v~~~~~~~~l~~~i~~~ 260 (829)
...++|-+..+..+.+.+..+.-...+.++|+.|+||||+|+.+.+.-.....++... |.. +...++.=...+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~-~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPV-YLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccc-cccccCCCCccCHHHHHHhcc
Confidence 3467898888888888876544556789999999999999998875321111110000 100 00000000000000000
Q ss_pred hcCC--C-CCCCCCCcchhhHHHHh-----hcCCcEEEEEcCCCCh--HhHHHhhh---cCC-CceEEEEe-eccccc--
Q 003325 261 VSGC--D-SMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSL--AVLEQLIF---RVP-GCKTLVVS-RFKFST-- 323 (829)
Q Consensus 261 l~~~--~-~~~~~~~~~~~~~~~~~-----~~~~~~LlVlDdv~~~--~~~~~l~~---~~~-gs~iivTt-R~~~~~-- 323 (829)
-... . ........+.+....+. ..+++-++|+|+++.. ...+.|.. ..| .+.+|++| +...+.
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 0 00000011112211111 1345557899999854 34555554 333 34544444 333322
Q ss_pred --cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh-HHHH
Q 003325 324 --VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL-ALKV 378 (829)
Q Consensus 324 --~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~ 378 (829)
.....+++.+++.++....+...+-.... ...++.+..+++.++|..- |+..
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 34578999999999988877765532221 1234578899999999654 4443
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0017 Score=74.58 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=100.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..++|.+...+.+..++..+.-...+.++|+.|+||||+|+.++..-... ...... ...++.-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~-----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT-----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC-----CCCCcccHHHHHHhcCCC
Confidence 35688888888888888754445678899999999999999998532111 110000 000110111111111100
Q ss_pred CCC---CCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhhc---CC-CceEEEEeeccc-cc----
Q 003325 263 GCD---SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKTLVVSRFKF-ST---- 323 (829)
Q Consensus 263 ~~~---~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~~---~~-gs~iivTtR~~~-~~---- 323 (829)
... ........+.++...... .+++-++|+|+++.. +.++.|... .+ ...+|++|.+.. +.
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 000 000001111222221111 245568899999854 455555542 23 344444444332 22
Q ss_pred cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 324 VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 324 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.....+++..++.++....+.+.+-.... ...++.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34567888899999888877766533221 122357889999999987655433
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0043 Score=69.05 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=96.7
Q ss_pred cccccccchhhHHHHHHhh-----cCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVI-----GRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+..-+|.++-+++|.+++- ++-.-++++.+||+|||||.+|+.++ ....+.| |=++|+.-.++.++.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA--~ALnRkF----fRfSvGG~tDvAeIk-- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIA--RALNRKF----FRFSVGGMTDVAEIK-- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHH--HHhCCce----EEEeccccccHHhhc--
Confidence 4455899999999999873 23567899999999999999999999 4566665 346777766665542
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh----------HhHHHhhhc-------------CCCceE
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------AVLEQLIFR-------------VPGCKT 313 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~----------~~~~~l~~~-------------~~gs~i 313 (829)
+....-.......+-.+++..+...=|+.||.|+.. ..++-+-+. ..=|+|
T Consensus 482 ------GHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 ------GHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ------ccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 222222222333334444444666778999999842 122222221 124777
Q ss_pred EEEeeccccc-------cccceEEccCCCHHHHHHHHHHhh
Q 003325 314 LVVSRFKFST-------VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 314 ivTtR~~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
+.......+. ..-..+++.+-..+|-..+-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 7544433332 233578888888888888777665
No 137
>PF14516 AAA_35: AAA-like domain
Probab=97.63 E-value=0.015 Score=62.05 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=117.2
Q ss_pred CCcccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-----CCHHHHH
Q 003325 180 LGNLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-----PNVEQLR 254 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-----~~~~~l~ 254 (829)
.+.+.-|+|....+++.+.+.. .-..+.|.|+-..|||+|...+.+..+- ..+ .++++++..- .+....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~--~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~--~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ--PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY--RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc--CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC--EEEEEEeecCCCcccCCHHHHH
Confidence 3445668888666677777753 4668999999999999999999853322 344 4457877542 2455555
Q ss_pred HHHHHhhcCCCCCCC---------CCCcchhhHHHHh--h--cCCcEEEEEcCCCCh--------HhHHHhhh------c
Q 003325 255 AKVWGFVSGCDSMEP---------NYVIPHWNLQIQS--K--LGSRCLVVLDDVWSL--------AVLEQLIF------R 307 (829)
Q Consensus 255 ~~i~~~l~~~~~~~~---------~~~~~~~~~~~~~--~--~~~~~LlVlDdv~~~--------~~~~~l~~------~ 307 (829)
+.+...+...-.... ..........++. + .+++.+|++|+|+.. +-+..++. .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 555444432221110 0111112222221 1 478999999999843 11222221 1
Q ss_pred CC--CceEEEEeeccc---cc-------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhH
Q 003325 308 VP--GCKTLVVSRFKF---ST-------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLA 375 (829)
Q Consensus 308 ~~--gs~iivTtR~~~---~~-------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLa 375 (829)
.+ ..-.+|...+.. .. .....++|++++.+|...|...+-.. ......++|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-------CCHHHHHHHHHHHCCCHHH
Confidence 11 111222222111 11 33467899999999999999877422 1123489999999999999
Q ss_pred HHHHHHHhcCC
Q 003325 376 LKVIGASLREQ 386 (829)
Q Consensus 376 i~~~~~~l~~~ 386 (829)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999999764
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.004 Score=69.61 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=95.2
Q ss_pred cccccccchhhHHHHHHhhc-----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+..-+|.++-+++|++.|-- .-.-.++++|||+|||||.|++.++ ....+.|- =++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA--~al~Rkfv----R~sLGGvrDEAEI--- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIA--KALGRKFV----RISLGGVRDEAEI--- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHH--HHhCCCEE----EEecCccccHHHh---
Confidence 44558999999999998832 2345799999999999999999999 56666662 3456655555443
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh----------HhHHHhhhc-------------CCCceE
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL----------AVLEQLIFR-------------VPGCKT 313 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~----------~~~~~l~~~-------------~~gs~i 313 (829)
.+....-.......+-......+.+.=+++||.++.. ..++-+-+. +.=|.|
T Consensus 393 -----RGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 -----RGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred -----ccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 2222221222222222333333567789999999842 122222221 123565
Q ss_pred E-EEeecccc---c---cccceEEccCCCHHHHHHHHHHhhc
Q 003325 314 L-VVSRFKFS---T---VLNDTYEVELLREDESLSLFCYSAF 348 (829)
Q Consensus 314 i-vTtR~~~~---~---~~~~~~~l~~L~~~e~~~Lf~~~a~ 348 (829)
+ |||-+..- + ..-.++++.+-+++|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 5 44444321 1 3346899999999999998887763
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0024 Score=72.54 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=101.9
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc---ccCCe---------------EEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS---YFNNR---------------ILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~---------------~~wv~v 244 (829)
..++|-+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++.-.-.. .++|. +.++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg 95 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG 95 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC
Confidence 456898888888998887655667789999999999999999985311111 11111 111111
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---CC-CceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~~-gs~iivTtR 318 (829)
.....+.++. ++...+. ..-..+++-++|+|+++.. +.++.+... .| ...+|.+|.
T Consensus 96 as~~~vddIr-~l~e~~~-----------------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 96 ASNTSVQDVR-QIKEEIM-----------------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred cccCCHHHHH-HHHHHHH-----------------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 1111111111 1111100 0001356668999999854 445555543 23 455555553
Q ss_pred cc-ccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 319 FK-FST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 319 ~~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
.. .+. .....++..+++.++..+.+...+...+. ...++.+..|++.++|.+..+.
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 32 222 33567899999999998888877643321 2234578889999999875443
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0032 Score=71.84 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=100.1
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc---ccCCe---------------EEEEE
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS---YFNNR---------------ILFLT 243 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~---------------~~wv~ 243 (829)
...++|.+...+.+.+.+..+.-.+.+.++|+.|+||||+|+.+...-.... .-+|+ ++.+.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eid 94 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEID 94 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEee
Confidence 3567899988888888887666677788999999999999999874211110 00110 11222
Q ss_pred eCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc---CC-CceEEEEe
Q 003325 244 VSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR---VP-GCKTLVVS 317 (829)
Q Consensus 244 v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~---~~-gs~iivTt 317 (829)
......+..+ +++...+... -..+++-++|+|+++.. +.+..|... .| ...+|++|
T Consensus 95 aas~~~vd~i-r~i~~~v~~~-----------------p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 95 AASNNGVDEI-RDIRDKVKYA-----------------PSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred ccccCCHHHH-HHHHHHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 1111111111 1111111000 01355668899999844 456666542 23 33444444
Q ss_pred -eccccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 318 -RFKFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 318 -R~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
....+. .....++..+++.++....+...+-..+. ...++.+..|++.++|.+..+
T Consensus 157 t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 333222 33467888999999988888776633221 123457788888998877543
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=2e-06 Score=94.26 Aligned_cols=39 Identities=28% Similarity=0.171 Sum_probs=21.9
Q ss_pred CceEEEEEeccCCCccccChhhhcCCCCceEEEccccCC
Q 003325 565 PKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTS 603 (829)
Q Consensus 565 ~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~ 603 (829)
+++.++.+-........-|-.+..+..||+|.+.+|...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchh
Confidence 444444443333222222556777888888888877543
No 142
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.54 E-value=0.0009 Score=68.96 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
....+.++|++|+||||+|+.+++.-.-.+.-.... ++.++. .++. ....+. ........++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~-~v~~~~----~~l~----~~~~g~-------~~~~~~~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGH-LIEVER----ADLV----GEYIGH-------TAQKTREVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCc-eEEecH----HHhh----hhhccc-------hHHHHHHHHHhc
Confidence 456688999999999999999985311001111111 233321 1111 111000 011111222211
Q ss_pred cCCcEEEEEcCCCCh----------HhHHHhhhc---CCCc-eEEEEeecccc--------c---cccceEEccCCCHHH
Q 003325 284 LGSRCLVVLDDVWSL----------AVLEQLIFR---VPGC-KTLVVSRFKFS--------T---VLNDTYEVELLREDE 338 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~----------~~~~~l~~~---~~gs-~iivTtR~~~~--------~---~~~~~~~l~~L~~~e 338 (829)
...+|++|+++.. +..+.+... .++. .+|+++..... + .....++++.++.++
T Consensus 105 --~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~e 182 (261)
T TIGR02881 105 --LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEE 182 (261)
T ss_pred --cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHH
Confidence 2348899999852 233444432 2233 44455433221 1 223457889999999
Q ss_pred HHHHHHHhhc
Q 003325 339 SLSLFCYSAF 348 (829)
Q Consensus 339 ~~~Lf~~~a~ 348 (829)
-.+++.+.+.
T Consensus 183 l~~Il~~~~~ 192 (261)
T TIGR02881 183 LMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 143
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.00032 Score=72.14 Aligned_cols=159 Identities=12% Similarity=0.079 Sum_probs=100.0
Q ss_pred cccccccchhhHHHHHHhhcCCC--ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDD--LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
.+.+.+|+..+..+..++...+. +..|-|.|.+|.|||.+.+.+.+.. .-+ .+ |+++-+.++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~---~v-w~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE---NV-WLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc---ce-eeehHHhccHHHHHHHHHH
Confidence 45678999999999998875533 4566899999999999999999643 222 23 9999999999999999999
Q ss_pred hhcCCCCCCCCCCc--chhhHH---HH---hh--cCCcEEEEEcCCCChHhHHHhh-----h---cCC-CceEEEEeecc
Q 003325 260 FVSGCDSMEPNYVI--PHWNLQ---IQ---SK--LGSRCLVVLDDVWSLAVLEQLI-----F---RVP-GCKTLVVSRFK 320 (829)
Q Consensus 260 ~l~~~~~~~~~~~~--~~~~~~---~~---~~--~~~~~LlVlDdv~~~~~~~~l~-----~---~~~-gs~iivTtR~~ 320 (829)
+....+..+..-.. +.+... .. .. .++.++||||+++...+.+... . ..+ ..-+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 88522211111111 111111 11 11 3579999999998654433221 1 112 23344444433
Q ss_pred ccc------c--ccceEEccCCCHHHHHHHHHHh
Q 003325 321 FST------V--LNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 321 ~~~------~--~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
... + ...++..+.-+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322 1 1234566778888888888543
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.52 E-value=0.006 Score=72.92 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=35.6
Q ss_pred ccccccchhhHHHHHHhhc-----CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.+..++++.+++.. .....++.++|++|+|||++|+.+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4468888888888886631 12345799999999999999999995
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0026 Score=72.88 Aligned_cols=176 Identities=12% Similarity=0.111 Sum_probs=99.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCe---------------EEEEEe
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNR---------------ILFLTV 244 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~---------------~~wv~v 244 (829)
..++|.+..+..+.+.+..+.-.+.+.++|+.|+||||+|+.+++.-.-.... +|+ ++.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~ 95 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDG 95 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeec
Confidence 45789888888888888755556778899999999999999988531111110 000 001111
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-CCceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtR 318 (829)
.....++++ +++...+... -..+++-++|+|+++.. +..+.|.. .. +...+|++|.
T Consensus 96 ~s~~~v~~i-r~l~~~~~~~-----------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 96 ASNTGVDDI-RELRENVKYL-----------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCccCHHHH-HHHHHHHHhc-----------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 111122221 1222221100 01244557889999854 34455543 22 3556665553
Q ss_pred c-cccc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch-hHHHHH
Q 003325 319 F-KFST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP-LALKVI 379 (829)
Q Consensus 319 ~-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 379 (829)
+ ..+. .....+++..++.++....+...+-..+. ...++....|++.++|.. .|+..+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3332 33567888999999888877665532221 223457788999999865 444444
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.47 E-value=0.0022 Score=71.19 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhcccccccc----CCeEEEEEeCC
Q 003325 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF----NNRILFLTVSQ 246 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~~wv~v~~ 246 (829)
..+.|.+..++++.+.+.. -...+-+.++|++|.|||++|+++++. +...+ ....+++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 3456788888888887531 134567999999999999999999963 32221 11233555442
Q ss_pred CCC-------HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh---------Hh-----HHHh
Q 003325 247 SPN-------VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL---------AV-----LEQL 304 (829)
Q Consensus 247 ~~~-------~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~---------~~-----~~~l 304 (829)
..- .....+.++. ..... ..+++++|++|+++.. .+ +..+
T Consensus 260 ~eLl~kyvGete~~ir~iF~------------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQ------------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred hhhcccccchHHHHHHHHHH------------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 110 0111111111 11111 1357899999999842 11 1223
Q ss_pred hh---cC---CCceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhh
Q 003325 305 IF---RV---PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 305 ~~---~~---~gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.. +. ++..||.||..... + .....++++..+.++..++|..+.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 22 21 23344445533321 1 123468999999999999999886
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.47 E-value=0.0015 Score=72.09 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=88.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccccccc-CCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...+.|+|++|+|||+|++++++. +.... ...+++++. .++...+...+... ... ...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~---~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME---EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH---HHHHHH
Confidence 457899999999999999999963 33332 334556543 23334444443211 111 112222
Q ss_pred cCCcEEEEEcCCCChH---hH-HHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003325 284 LGSRCLVVLDDVWSLA---VL-EQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~~---~~-~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
.. .-+|||||++... .+ +.+.. ...|..+|+||...... .....+++++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 3488999998431 11 12221 12366788887643211 1224688999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
+...+-.... ...+++...|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGL---ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Confidence 9888743221 2235578888888888765443
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.012 Score=62.00 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=102.5
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccc-------------ccccCCeEEEEEeCCCCCH
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV-------------TSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~~wv~v~~~~~~ 250 (829)
.++|.+..++.+.+.+..+.-.+...++|+.|+||+++|..+.+.--- ...+++ +.|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 468888888888888876555689999999999999999888642110 111222 123321100000
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCCCh--HhHHHhhh---cCCCceEEEEeecc
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWSL--AVLEQLIF---RVPGCKTLVVSRFK 320 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~~--~~~~~l~~---~~~gs~iivTtR~~ 320 (829)
..+...-+...+........-.++......+.+ .+++-++|+|+++.. .....+.. .-|.+.+|++|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 000000000100000000000111222222221 456778899998844 44444443 23455566555444
Q ss_pred c-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 321 F-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 321 ~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
. +. .....+++.++++++..+.+........ .+.....++..++|.|..+..+
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 3 22 4567899999999999999987642111 1112467899999999766543
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.0013 Score=73.59 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=90.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccccccc-CCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
....+.|+|++|+|||+||+++++ .+...+ ...+.+++.. ++...+...+... .. ....+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~---~~~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM---EEFKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH---HHHHHH
Confidence 346789999999999999999996 344443 3345455443 3333343333211 11 111122
Q ss_pred hcCCcEEEEEcCCCCh---H-hHHHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHH
Q 003325 283 KLGSRCLVVLDDVWSL---A-VLEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLS 341 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~---~-~~~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~ 341 (829)
++ +.-+|||||++.. + ..+.+.. ...|..||+||...... ....++++++.+.++-..
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 22 3448999999742 1 1122221 12356688887654311 223578999999999999
Q ss_pred HHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 342 LFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 342 Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
++...+-... ....+++..-|++.+.|..-.+
T Consensus 288 il~~~~~~~~---~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 288 ILKKKAEEEG---IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHcC---CCCCHHHHHHHHcCcCCCHHHH
Confidence 9998874321 1223568888999998876644
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=8.7e-05 Score=85.88 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=26.9
Q ss_pred cCCCCCCEEecccCCcCCcccccccCCCCCCEEeccCCcCCC-CCccccCCCccccEeeccccc
Q 003325 713 GKMKSLQILRLYACPHLRTLPARICELVCLKYLNISQCVSLS-CLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 713 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~~L~~L~l~~~~ 775 (829)
.++|+|..||+|+++... + .+++++++|+.|.+.+-.... .--..+.+|++|+.||+|...
T Consensus 170 ~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 345555555555533222 2 445555555555554322111 001124455555555555443
No 151
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0079 Score=59.06 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC-CCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS-QSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (829)
++-+++.+.|.-|.|||.++++... ... +..+.-+.+. +......+...+...+............+.....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~--s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLA--SLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHH--hcC---CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 5667999999999999999995542 111 2222223333 345566677777777765221111112222333333
Q ss_pred hh--cCCc-EEEEEcCCCCh--HhHHHhh---hcC-CCc---eEEEEeeccc------cc-----cccce-EEccCCCHH
Q 003325 282 SK--LGSR-CLVVLDDVWSL--AVLEQLI---FRV-PGC---KTLVVSRFKF------ST-----VLNDT-YEVELLRED 337 (829)
Q Consensus 282 ~~--~~~~-~LlVlDdv~~~--~~~~~l~---~~~-~gs---~iivTtR~~~------~~-----~~~~~-~~l~~L~~~ 337 (829)
.+ ++++ +.+++||.... +.++.++ ..- .++ +|+.....+- .. ..... |++++++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 22 6777 99999999843 3444333 211 121 2333332221 11 11123 899999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 003325 338 ESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA 381 (829)
Q Consensus 338 e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 381 (829)
+...++....-+...+++-..++....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99998888876665555566677899999999999999988765
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0076 Score=63.81 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEEEeC---CCCCHHHHHHHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS---QSPNVEQLRAKVWGF 260 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~---~~~~~~~l~~~i~~~ 260 (829)
.-.+.+.++|+.|+||||+|+.++..---.+ ..+. ++|+.-. +...++++. ++.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR-~l~~~ 97 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVR-ELVSF 97 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHH-HHHHH
Confidence 3456788999999999999998875321111 0111 2233221 112232222 22222
Q ss_pred hcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---c-CCCceEEEEeeccccc-----cccceE
Q 003325 261 VSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---R-VPGCKTLVVSRFKFST-----VLNDTY 329 (829)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~-~~gs~iivTtR~~~~~-----~~~~~~ 329 (829)
+.... ..+++-++|+|+++. .+....+.. . .+++.+|+||.+.... .....+
T Consensus 98 ~~~~~-----------------~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 98 VVQTA-----------------QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred Hhhcc-----------------ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 21110 123344456799984 445555554 2 2367777777666432 345789
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.+.+++.+++.+.+.... .. ..++.+..++..++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~L~~~~-~~------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL-PE------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhc-cc------CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998887653 11 11234567789999999866544
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.00078 Score=80.92 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccc---cccccC-CeEEEEEeCCCCCHHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQ---VTSYFN-NRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F~-~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
..++||+.+++++++.|.... .+-+.++|++|+|||++|+.++..-. +..... ..++.++.+ .++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------LLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------HHh----
Confidence 357999999999999997543 33456999999999999999985311 111111 233222221 111
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh----------HhHHHhhhcCC-C-ceEEEEeecccc---
Q 003325 259 GFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------AVLEQLIFRVP-G-CKTLVVSRFKFS--- 322 (829)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~----------~~~~~l~~~~~-g-s~iivTtR~~~~--- 322 (829)
.+... ..+..+.+...++.. ..++++|++|+++.. +.-+-+.+... | -++|.+|.....
T Consensus 248 ---ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 ---AGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred ---ccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 11110 011112233333332 356899999999732 11222333322 2 345544444321
Q ss_pred -----c--cccceEEccCCCHHHHHHHHHHh
Q 003325 323 -----T--VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 323 -----~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
+ .....+.++..+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 33456788889999988887643
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0091 Score=67.36 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=88.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhcccccccc-CCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYF-NNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...+.|+|..|+|||.|++++++. ....+ ..++++++. .++..++...+... ..+.+. +..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-------~~~~f~---~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-------KGDSFR---RRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-------cHHHHH---HHh
Confidence 456899999999999999999963 33322 234556544 33444444333211 111111 112
Q ss_pred cCCcEEEEEcCCCCh---HhHHH-hh---h--cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003325 284 LGSRCLVVLDDVWSL---AVLEQ-LI---F--RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~~~-l~---~--~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
. +-=+|||||++.. +.|+. |. . ...|..|||||+..... ...-+++|+..+.+.-..+
T Consensus 376 ~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 R-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred h-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 2358899999843 22221 22 1 12367788888764311 2345789999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 343 FCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+.+++-...- ...++++.-|++.+.+..-.+
T Consensus 455 L~kka~~r~l---~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQL---NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCC---CCCHHHHHHHHHhccCCHHHH
Confidence 9988743321 222457777877777654433
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.00079 Score=80.73 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=83.6
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc------cCCeEEEEEeCCCCCHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY------FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..++||+.++.++++.|..+ ...-+.++|++|+|||++|+.+... +... ...+++++.++.-..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~l~a------- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGALVA------- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhhhhh-------
Confidence 35899999999999999754 4445669999999999999999853 2211 123444443332100
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH----------hHHHhhhcCC-C-ceEEEEeecccc
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA----------VLEQLIFRVP-G-CKTLVVSRFKFS 322 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~----------~~~~l~~~~~-g-s~iivTtR~~~~ 322 (829)
+.. ......+.++..+..+ .+++++|++|+++... .-+-+.+... | -++|-+|.....
T Consensus 248 ------g~~--~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ------GAK--YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred ------ccc--hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 000 0001111222222222 3568999999998542 2223334332 3 345544444331
Q ss_pred --------c--cccceEEccCCCHHHHHHHHHHhh
Q 003325 323 --------T--VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 323 --------~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
+ ...+.+.+...+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 223467777788999999886554
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.40 E-value=0.0066 Score=59.84 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=36.4
Q ss_pred cccccccchhhHHHHHHh---hcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 182 NLMGIGMALGKNKVKEMV---IGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
-..++|.+..++.+++-. ..+....-+.+||..|.|||++++++.+.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 346788888888777643 33456677888999999999999999964
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.39 E-value=2.9e-05 Score=85.97 Aligned_cols=216 Identities=18% Similarity=0.161 Sum_probs=125.2
Q ss_pred CCceEEEEEeccCCCccccChhhhcCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCc
Q 003325 564 FPKAEVLILNFSSTEEYFLPPFIENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQ 643 (829)
Q Consensus 564 ~~~l~~l~L~~~~~~~~~lp~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 643 (829)
+..++.+.+. .+....+...+..|++|++|++++|.. ..+..+..++.|+.|++++|.+..+.. +..+++|+
T Consensus 94 ~~~l~~l~l~--~n~i~~i~~~l~~~~~L~~L~ls~N~I-----~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLY--DNKIEKIENLLSSLVNLQVLDLSFNKI-----TKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred ccceeeeecc--ccchhhcccchhhhhcchheecccccc-----ccccchhhccchhhheeccCcchhccC-Cccchhhh
Confidence 3445555443 333445544477788899998888764 334456677778889999988887653 44578888
Q ss_pred eEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCC--CCCEE
Q 003325 644 KISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMK--SLQIL 721 (829)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~--~L~~L 721 (829)
.+++++|.+...-.. . ...+.+|+.+.+.+|... .+ ..+..+..+..+++..|.....- .+..+. +|+.+
T Consensus 166 ~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~-~i-~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l 237 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIR-EI-EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLREL 237 (414)
T ss_pred cccCCcchhhhhhhh---h-hhhccchHHHhccCCchh-cc-cchHHHHHHHHhhcccccceecc--CcccchhHHHHHH
Confidence 888888876543221 0 134778888888887432 22 23444455555566665432221 222333 37888
Q ss_pred ecccCCcCCcccccccCCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCc---cCCcc-cccccccCceeccc
Q 003325 722 RLYACPHLRTLPARICELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIW---SLPKS-VNSLKSLRQVICEE 797 (829)
Q Consensus 722 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~---~lp~~-l~~l~~L~~L~~~~ 797 (829)
.++++. +...+..+..++.+..|++.++.. ..+ ..+...+.+..+....+.+.. ..... ....+.+..+.+..
T Consensus 238 ~l~~n~-i~~~~~~~~~~~~l~~l~~~~n~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
T KOG0531|consen 238 YLSGNR-ISRSPEGLENLKNLPVLDLSSNRI-SNL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL 314 (414)
T ss_pred hcccCc-cccccccccccccccccchhhccc-ccc-ccccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence 888854 333445566778888888877532 222 224445555666666655321 11111 34455555555544
Q ss_pred h
Q 003325 798 D 798 (829)
Q Consensus 798 ~ 798 (829)
+
T Consensus 315 ~ 315 (414)
T KOG0531|consen 315 N 315 (414)
T ss_pred C
Confidence 4
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=3.4e-05 Score=89.25 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=63.1
Q ss_pred cccceeeecccccC--CCCCCcc-ccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCC
Q 003325 617 TNLRSLWLEKVSIS--QLPKSSI-PLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQS 693 (829)
Q Consensus 617 ~~L~~L~l~~~~i~--~lp~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~ 693 (829)
.+|++|+++|...- ..|..++ .+|+|+.|.+.+-.+... .+.....+||+|..||++++ ++..+ .++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGT-NISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCC-CccCc-HHHhcccc
Confidence 35555555553311 2232333 256666666654333221 12233455677777777765 34444 45667777
Q ss_pred CcEEEeccccccc-cchhhccCCCCCCEEecccCCcCCcc------cccccCCCCCCEEeccC
Q 003325 694 LKNLSVTNCHSLQ-ELPADIGKMKSLQILRLYACPHLRTL------PARICELVCLKYLNISQ 749 (829)
Q Consensus 694 L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~l~~l------p~~~~~l~~L~~L~l~~ 749 (829)
|+.|.+.+-.... ..-..+.+|++|+.||+|.......- -+.-..+|.|+.||.|+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7777665432211 11134556777777777653322111 01112356666666665
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.38 E-value=0.00041 Score=74.81 Aligned_cols=105 Identities=12% Similarity=-0.009 Sum_probs=65.4
Q ss_pred ccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCC
Q 003325 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGC 264 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~ 264 (829)
+++.+...+.+...|. ..+.|.++|++|+|||++|+.+++.......|. ++.||.++...+..++.....-
T Consensus 177 ~~i~e~~le~l~~~L~---~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~-~v~~VtFHpsySYeDFI~G~rP----- 247 (459)
T PRK11331 177 LFIPETTIETILKRLT---IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ-RVNMVQFHQSYSYEDFIQGYRP----- 247 (459)
T ss_pred ccCCHHHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccc-eeeEEeecccccHHHHhcccCC-----
Confidence 5667777888888876 356788899999999999999996443334454 5669999988777665432210
Q ss_pred CCCCCCCCcchhhHH-HHhh--cCCcEEEEEcCCCCh
Q 003325 265 DSMEPNYVIPHWNLQ-IQSK--LGSRCLVVLDDVWSL 298 (829)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~--~~~~~LlVlDdv~~~ 298 (829)
...+-......+... .... .++++.||+|++...
T Consensus 248 ~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000000000111111 1111 357899999999853
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0029 Score=69.90 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
...+.|+|+.|+|||+|++++++. +... ...+++++. ..+...+...+... .. .. .+..-
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~-~~~v~yi~~------~~f~~~~~~~l~~~-------~~---~~-f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRES-GGKILYVRS------ELFTEHLVSAIRSG-------EM---QR-FRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHc-CCCEEEeeH------HHHHHHHHHHHhcc-------hH---HH-HHHHc
Confidence 467899999999999999999963 3222 234545543 33344444443211 11 11 11112
Q ss_pred CCcEEEEEcCCCChHh----HHHhhh-----cCCCceEEEEeeccccc------------cccceEEccCCCHHHHHHHH
Q 003325 285 GSRCLVVLDDVWSLAV----LEQLIF-----RVPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSLF 343 (829)
Q Consensus 285 ~~~~LlVlDdv~~~~~----~~~l~~-----~~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~Lf 343 (829)
.+.-+|++||++.... .+.+.. ...|..||+||...... ...-.+++++++.++-..++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3445888999975311 111211 12467888888553211 22357889999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003325 344 CYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
.+.+-... ....+++..-|+..+.|.
T Consensus 281 ~~k~~~~~---~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALS---IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcC---CCCCHHHHHHHHHhcCCC
Confidence 88774322 112244666677766654
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=97.38 E-value=0.0054 Score=63.71 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (829)
..+.++|++|+||||+|+.++....-.+.-...- |+.++ ..++ .....+.. .......++. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-~~~v~----~~~l----~~~~~g~~-------~~~~~~~l~~--a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGH-LLTVT----RDDL----VGQYIGHT-------APKTKEVLKK--A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc-eEEec----HHHH----HHHHhccc-------hHHHHHHHHH--c
Confidence 4588999999999999999975211111111111 44444 1122 22221111 0111112221 2
Q ss_pred CcEEEEEcCCCCh-----------HhHHHhhh---cC-CCceEEEEeecccc--------c---cccceEEccCCCHHHH
Q 003325 286 SRCLVVLDDVWSL-----------AVLEQLIF---RV-PGCKTLVVSRFKFS--------T---VLNDTYEVELLREDES 339 (829)
Q Consensus 286 ~~~LlVlDdv~~~-----------~~~~~l~~---~~-~gs~iivTtR~~~~--------~---~~~~~~~l~~L~~~e~ 339 (829)
..-+|++|+++.. +..+.+.. .. .+.+||.++..... + .....+++++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2348999999742 22233322 22 34566666643221 1 2345788999999999
Q ss_pred HHHHHHhhcC
Q 003325 340 LSLFCYSAFG 349 (829)
Q Consensus 340 ~~Lf~~~a~~ 349 (829)
.+++...+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 162
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0048 Score=63.34 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=100.6
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003325 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
..+=|-++.+++|.+..-- -+.++-|.++|++|.|||-||++|+++ ....| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF------IrvvgS--- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF------IRVVGS--- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE------EEeccH---
Confidence 3455677778887776521 156788999999999999999999963 33333 333321
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh--------------------HhHHHhhhcCC
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL--------------------AVLEQLIFRVP 309 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~--------------------~~~~~l~~~~~ 309 (829)
++.++ ..+. ........++. ....++.|++|.++.. +.+.++-+.-+
T Consensus 220 -ElVqK----YiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 -ELVQK----YIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -HHHHH----Hhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 11111 1111 01111111111 1467899999999732 11222222212
Q ss_pred --CceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch----hH
Q 003325 310 --GCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP----LA 375 (829)
Q Consensus 310 --gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P----La 375 (829)
.-|||..|.-.... ..++.++++.-+.+.-.++|.-++-+-+-...-. .+.+++.|.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHH
Confidence 46888777655432 2356789997777778888888875544332222 345666666654 34
Q ss_pred HHHHHHHhc
Q 003325 376 LKVIGASLR 384 (829)
Q Consensus 376 i~~~~~~l~ 384 (829)
+.+=|+++.
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 555566553
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.31 E-value=0.00082 Score=61.88 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
..+.|+|++|+||||+|+.++. ...... ..++++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~-~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPG-GGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCC-CCEEEECCEEc
Confidence 5789999999999999999995 333322 13445555443
No 164
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.31 E-value=0.0057 Score=63.59 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCC
Q 003325 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGS 286 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (829)
.+.++|++|.||||+|+.++.-..-.+...... ++.++. .++ ...+.+.. .......++. -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~-~v~v~~----~~l----~~~~~g~~-------~~~~~~~~~~--a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGH-LVSVTR----DDL----VGQYIGHT-------APKTKEILKR--AM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccce-EEEecH----HHH----hHhhcccc-------hHHHHHHHHH--cc
Confidence 688999999999999987764211111111122 444442 122 22222211 0111222222 23
Q ss_pred cEEEEEcCCCCh-----------HhHHHhhh---cC-CCceEEEEeeccccc-----------cccceEEccCCCHHHHH
Q 003325 287 RCLVVLDDVWSL-----------AVLEQLIF---RV-PGCKTLVVSRFKFST-----------VLNDTYEVELLREDESL 340 (829)
Q Consensus 287 ~~LlVlDdv~~~-----------~~~~~l~~---~~-~gs~iivTtR~~~~~-----------~~~~~~~l~~L~~~e~~ 340 (829)
.-+|+||+++.. +.++.+.. .. .+.+||.++...... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368899999732 22233332 22 345666665432211 12457899999999999
Q ss_pred HHHHHhh
Q 003325 341 SLFCYSA 347 (829)
Q Consensus 341 ~Lf~~~a 347 (829)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9998776
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.28 E-value=0.0031 Score=68.49 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=90.0
Q ss_pred ccccccchhhHHHHHHhhc---C---------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003325 183 LMGIGMALGKNKVKEMVIG---R---------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
..+.|.+..++++.+.+.- . ...+-|.++|++|.|||++|+++++. ....| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f----i~i~~s----- 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF----IRVVGS----- 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE----EEEehH-----
Confidence 3567888888888776531 0 34678999999999999999999963 22222 122111
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------H---hHHHhhh---c---
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------A---VLEQLIF---R--- 307 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~---~~~~l~~---~--- 307 (829)
.+.... .+. ....+...+.. ....+.+|++|+++.. + .+..+.. +
T Consensus 214 -~l~~k~----~ge-------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 -EFVQKY----LGE-------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred -HHHHHh----cch-------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111110 000 01111112211 2467899999998732 0 1222222 1
Q ss_pred CCCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003325 308 VPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 308 ~~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
..+..||.||...... .....++++..+.++...+|..+.-+....... ...++++.+.|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~ 350 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKI 350 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCC
Confidence 1245677777655422 123568889899999888888765332211111 234566666665
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0014 Score=76.79 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=82.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc----c-CCeEEEEEeCCCCCHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY----F-NNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F-~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..++||+.++.++++.|..... .-+.++|++|+|||++|+.+++. -+... + ++.+ |. + +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~n~LLvGppGvGKT~lae~la~~-i~~~~vP~~l~~~~~-~~-l----~~~~l---- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWR-IVQGDVPEVMADCTI-YS-L----DIGSL---- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-CCeEEECCCCCCHHHHHHHHHHH-HHhcCCCchhcCCeE-Ee-c----cHHHH----
Confidence 3589999999999998875433 44568999999999999999852 11111 1 2222 31 1 11111
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh----------HhH-HHhhhcC-CC-ceEEEEeeccc--
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL----------AVL-EQLIFRV-PG-CKTLVVSRFKF-- 321 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~----------~~~-~~l~~~~-~g-s~iivTtR~~~-- 321 (829)
+.+... ..+....+......+ +.++.+|++|+++.. .+. .-+.+.. .| -++|-+|....
T Consensus 254 ---laG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 254 ---LAGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred ---hcccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 001000 001111222232222 356789999999742 111 1233322 23 34444443322
Q ss_pred ------cc--cccceEEccCCCHHHHHHHHHHhh
Q 003325 322 ------ST--VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 322 ------~~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.+ ...+.+.++.++.+++..++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 334689999999999999988653
No 167
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.26 E-value=1.3e-05 Score=82.70 Aligned_cols=227 Identities=19% Similarity=0.227 Sum_probs=113.6
Q ss_pred CCceEEEccccCCccccCCC-cccCCccccceeeecccc-cCC--CCCCccccCCCceEEeeeccccccccccccccCCc
Q 003325 591 KLRALIVINYSTSNAALGNF-SVCSNLTNLRSLWLEKVS-ISQ--LPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKT 666 (829)
Q Consensus 591 ~Lr~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 666 (829)
-||.|.+.++..... ..+ ....++++++.|.+.++. +++ +-..-..+.+|++|++..|..... ..+..+...
T Consensus 139 ~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~--~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD--VSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH--HHHHHHHHh
Confidence 578888887753221 111 123567888888888875 221 111123578888888887654322 112223456
Q ss_pred ccccccccccccccccc--CCccccCcCCCcEEEecccccccc--chhhccCCCCCCEEecccCCcCCccc--ccccCCC
Q 003325 667 LPCLTELTFDHCDDLMK--LPPSICGLQSLKNLSVTNCHSLQE--LPADIGKMKSLQILRLYACPHLRTLP--ARICELV 740 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~ 740 (829)
+++|++|+++.|..+.. +-.-..++..|+.+.++||..... +-..=+...-+-++++.+|+.+.... ..-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 89999999999876653 222234566677777777754321 10011122334444444554443321 1112345
Q ss_pred CCCEEeccCCcCCCCCccc--cCCCccccEeeccccccCccCCc--ccccccccCcee---ccchhhhhhhhhhhhCCCc
Q 003325 741 CLKYLNISQCVSLSCLPQG--IGNLIRLEKIDMRECSQIWSLPK--SVNSLKSLRQVI---CEEDVSWAWKDLEKTLPNL 813 (829)
Q Consensus 741 ~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~---~~~~~~~~~~~l~~~lp~L 813 (829)
.|+.|+.++|..+...+-+ ..+..+|+.|-+.+|..++..-. .-.+.+.|+.++ |......+...+....|.+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 5666666666554433221 24455666666666654332111 111233333333 3333333344445555555
Q ss_pred eEEecccc
Q 003325 814 HVQVPAKC 821 (829)
Q Consensus 814 ~~~~~~~~ 821 (829)
+...+..|
T Consensus 375 r~lslshc 382 (483)
T KOG4341|consen 375 RVLSLSHC 382 (483)
T ss_pred ccCChhhh
Confidence 55444433
No 168
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.26 E-value=0.0011 Score=69.79 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCCCCCC
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDSMEPN 270 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~ 270 (829)
.++++++..-..-.-+.|+|.+|+|||||++.+++. +.. +-+..++|+.+.+ ..++.++.+.+...+.........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 457777764445567799999999999999998853 322 2233345777765 457788888887766543221111
Q ss_pred CC-cc---hhhHHHHhh--cCCcEEEEEcCCCC
Q 003325 271 YV-IP---HWNLQIQSK--LGSRCLVVLDDVWS 297 (829)
Q Consensus 271 ~~-~~---~~~~~~~~~--~~~~~LlVlDdv~~ 297 (829)
.. .. ......+.+ .+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 11 111222222 78999999999964
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.25 E-value=0.0014 Score=78.88 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=84.0
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccc------cCCeEEEEEeCCCCCHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSY------FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..++||+.++.++++.|... ...-+.++|++|+|||++|+.++.. +... ....++.+.++ .+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~------~l~-- 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMG------ALI-- 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHH------HHh--
Confidence 35899999999999999754 3445568999999999999998853 2221 12234333322 110
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh--cCCcEEEEEcCCCChH----------hHHHhhhcCC-C-ceEEEEeecccc
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK--LGSRCLVVLDDVWSLA----------VLEQLIFRVP-G-CKTLVVSRFKFS 322 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~LlVlDdv~~~~----------~~~~l~~~~~-g-s~iivTtR~~~~ 322 (829)
.+.. ........+...+..+ .+++.+|++|+++..- ..+.+.+... | -++|-+|.....
T Consensus 242 -----a~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 242 -----AGAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred -----hcch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 0000 0001111223333332 2468999999998431 2233333322 2 344444443321
Q ss_pred --------c--cccceEEccCCCHHHHHHHHHHhh
Q 003325 323 --------T--VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 323 --------~--~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
+ .....+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 334578899999999999887653
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0041 Score=67.90 Aligned_cols=229 Identities=17% Similarity=0.101 Sum_probs=119.0
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHHhhcCCCCCCCCC
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
.++.+.+..... ++.|.|+-++||||+++.+.. ..... +++++..+.. +...+ .+.+...
T Consensus 27 ~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~--~~~~~----~iy~~~~d~~~~~~~l-~d~~~~~---------- 87 (398)
T COG1373 27 PRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIK--GLLEE----IIYINFDDLRLDRIEL-LDLLRAY---------- 87 (398)
T ss_pred HHHHhhcccCCc--EEEEECCccccHHHHHHHHHh--hCCcc----eEEEEecchhcchhhH-HHHHHHH----------
Confidence 444554432222 999999999999999976663 22222 3344443221 11111 1222111
Q ss_pred CcchhhHHHHhhcCCcEEEEEcCCCChHhHHHhhhc----CCCceEEEEeeccccc---------cccceEEccCCCHHH
Q 003325 272 VIPHWNLQIQSKLGSRCLVVLDDVWSLAVLEQLIFR----VPGCKTLVVSRFKFST---------VLNDTYEVELLREDE 338 (829)
Q Consensus 272 ~~~~~~~~~~~~~~~~~LlVlDdv~~~~~~~~l~~~----~~gs~iivTtR~~~~~---------~~~~~~~l~~L~~~e 338 (829)
......++..++||.|+....|...... ++. +|++|+-+.... +....+++-||+-.|
T Consensus 88 --------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 88 --------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred --------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 1111227889999999999998876653 334 788888776542 445678999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhccCCCCccccchhHHHHHHH
Q 003325 339 SLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSKGEPICESHENNLLDRMAI 418 (829)
Q Consensus 339 ~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~ 418 (829)
...+....+. .. ..+ ..-+-.-..||.|-++..-...-+ -......+.. .++ ...
T Consensus 159 fl~~~~~~~~-----~~-~~~-~~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~-------------~Di---~~~ 213 (398)
T COG1373 159 FLKLKGEEIE-----PS-KLE-LLFEKYLETGGFPESVKADLSEKK--LKEYLDTILK-------------RDI---IER 213 (398)
T ss_pred HHhhcccccc-----hh-HHH-HHHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH-------------HHH---HHH
Confidence 8876430000 00 011 122233356888887764222111 0000111111 000 011
Q ss_pred hhcCCChhHHHHHHhhCCCCCCCccCHHHHHHHHHHhcCCCHHHHHHHHHHHhhcchhhh
Q 003325 419 SIQYLPKKVKECFLDLGSFPEDKKIPLEVLINMWVEIHDLDEEEAFAILVELSDRNLLKI 478 (829)
Q Consensus 419 sy~~L~~~~k~~fl~~a~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~l~~L~~~sli~~ 478 (829)
.--.=+...+..+.+++... +..+....+.+.+- ++.......|++-|.+.-++..
T Consensus 214 ~~~~~~~~~k~i~~~l~~~~-g~~~s~~~la~~l~---~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 214 GKIENADLMKRILRFLASNI-GSPISYSSLARELK---GISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred cCcccHHHHHHHHHHHHhhc-CCccCHHHHHHHHh---ccchHHHHHHHHHHHHhhheEE
Confidence 00000134455555555543 45566666666542 4445666777777776666553
No 171
>PRK08116 hypothetical protein; Validated
Probab=97.23 E-value=0.0018 Score=66.60 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (829)
..+.++|.+|+|||.||.++++. +..+ ...++++++ .+++..+........ ........+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~-~~~v~~~~~------~~ll~~i~~~~~~~~-------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEK-GVPVIFVNF------PQLLNRIKSTYKSSG-------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHc-CCeEEEEEH------HHHHHHHHHHHhccc-------cccHHHHHHHhcC
Confidence 46889999999999999999964 3322 234446553 344445444332111 0111122333333
Q ss_pred CcEEEEEcCCCC--hHhHH-----Hhhh--cCCCceEEEEeecc
Q 003325 286 SRCLVVLDDVWS--LAVLE-----QLIF--RVPGCKTLVVSRFK 320 (829)
Q Consensus 286 ~~~LlVlDdv~~--~~~~~-----~l~~--~~~gs~iivTtR~~ 320 (829)
-. ||||||+.. ...|. .+.. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33 899999952 22332 1222 12467788988744
No 172
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.22 E-value=0.043 Score=65.14 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=84.5
Q ss_pred CcccccccchhhHHHHHHhhc-----CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHH
Q 003325 181 GNLMGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (829)
.+...+|.+.-+++|.++|.. .....++.++|++|+||||+|+.++. .....|- -+..+...+...+..
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~----~i~~~~~~d~~~i~g 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV----RMALGGVRDEAEIRG 393 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE----EEEcCCCCCHHHhcc
Confidence 345678999999999988752 12456899999999999999999994 3333331 234444334332211
Q ss_pred HHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCChHh------HHHhhhc-------------------CCC
Q 003325 256 KVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSLAV------LEQLIFR-------------------VPG 310 (829)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~~~------~~~l~~~-------------------~~g 310 (829)
. ...-.......+...+.......-+++||.++.... ...+... ...
T Consensus 394 ~--------~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 394 H--------RRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred c--------hhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1 100000111111111222222344788999973211 1222221 122
Q ss_pred ceEEEEeeccccc----cccceEEccCCCHHHHHHHHHHhh
Q 003325 311 CKTLVVSRFKFST----VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 311 s~iivTtR~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
.-+|.|+....+. ....++++.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3334444333222 333578999999999999988776
No 173
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.22 E-value=0.0024 Score=69.91 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=81.9
Q ss_pred ccccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003325 183 LMGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
..+.|.+..++++.+.+.- -...+-+.++|++|.|||++|+++++ .....|- .+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~fi----~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATFL----RVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCEE----EEecch----
Confidence 3457888888888887631 13456788999999999999999996 3333331 221111
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh-------------H---hHHHhhh---c---
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL-------------A---VLEQLIF---R--- 307 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~-------------~---~~~~l~~---~--- 307 (829)
+.. ...+. ....+...+.. ..+.+.+|+||+++.. + .+..+.. +
T Consensus 253 --L~~----k~~Ge-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 --LIQ----KYLGD-------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hhh----hhcch-------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 110 00000 00111111111 1456788999987631 0 1111221 1
Q ss_pred CCCceEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhhcC
Q 003325 308 VPGCKTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSAFG 349 (829)
Q Consensus 308 ~~gs~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~ 349 (829)
..+.+||.||...... .....++++..+.++..++|..+..+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1255777777654322 22457889999999999999987643
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.016 Score=60.71 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=57.6
Q ss_pred cCCcEEEEEcCCCCh--HhHHHhhh----cCCCceEEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCC
Q 003325 284 LGSRCLVVLDDVWSL--AVLEQLIF----RVPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKT 352 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~--~~~~~l~~----~~~gs~iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~ 352 (829)
.+++-++|+|+++.. +.-..+.. ..+++.+|++|.... +. .....+.+.+++.+++.+.+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 356678999999854 33444443 233677777776544 22 345678999999999988886431
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 353 IPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 353 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
..+..+..++..++|.|+.+..+
T Consensus 186 ----~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 ----VSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11224667899999999876544
No 175
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=3.8e-05 Score=67.04 Aligned_cols=110 Identities=21% Similarity=0.346 Sum_probs=76.2
Q ss_pred cccccccccccccccCCc---cccCcCCCcEEEeccccccccchhhcc-CCCCCCEEecccCCcCCcccccccCCCCCCE
Q 003325 669 CLTELTFDHCDDLMKLPP---SICGLQSLKNLSVTNCHSLQELPADIG-KMKSLQILRLYACPHLRTLPARICELVCLKY 744 (829)
Q Consensus 669 ~L~~L~L~~~~~~~~lp~---~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 744 (829)
.+..++|++|. +..+++ .+.....|...+|++|. .+.+|+.|. ..+.++.|++++ +.+..+|..+..++.|+.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhh
Confidence 46677888874 333433 34556677777888865 677776664 345788888877 556778888888888888
Q ss_pred EeccCCcCCCCCccccCCCccccEeeccccccCccCCcc
Q 003325 745 LNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKS 783 (829)
Q Consensus 745 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 783 (829)
|+++.| .+...|..+..|.+|-.|+..+|. ...+|..
T Consensus 105 lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFN-PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccccC-ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888875 455667777778888888877776 4555543
No 176
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=2.2e-05 Score=68.43 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCCEEecccCCcCCccccccc-CCCCCCEEeccCCcCCCCCccccCCCccccEeeccccccCccCCcccccccccCcee
Q 003325 716 KSLQILRLYACPHLRTLPARIC-ELVCLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECSQIWSLPKSVNSLKSLRQVI 794 (829)
Q Consensus 716 ~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 794 (829)
..|...+|++ +.++.+|..+. +++.++.|++++ +.++.+|..+..++.|+.|+++.|+ +...|..+..|.+|..|+
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence 3344445554 23344444332 233555555554 2344555555555555555555555 444454444455555555
Q ss_pred ccch
Q 003325 795 CEED 798 (829)
Q Consensus 795 ~~~~ 798 (829)
..++
T Consensus 130 s~~n 133 (177)
T KOG4579|consen 130 SPEN 133 (177)
T ss_pred CCCC
Confidence 4433
No 177
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.15 E-value=0.00026 Score=49.90 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=25.5
Q ss_pred cccceeeecccccCCCCCCccccCCCceEEeeecccc
Q 003325 617 TNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKIN 653 (829)
Q Consensus 617 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~ 653 (829)
++|++|++++|.|+.+|+.+.+|++|+.|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3677777888877777766777777777777776644
No 178
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.14 E-value=0.00044 Score=63.73 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=48.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCc
Q 003325 208 LGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSR 287 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (829)
|.++|++|+|||+||+.++. .. ...++-+.++...+..++....--. .+ ...-....+.... .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~----~~~~~~~~l~~a~----~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LL----GRPVIRINCSSDTTEEDLIGSYDPS-NG----QFEFKDGPLVRAM----RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HH----TCEEEEEE-TTTSTHHHHHCEEET--TT----TTCEEE-CCCTTH----HEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hh----hcceEEEEeccccccccceeeeeec-cc----ccccccccccccc----cce
Confidence 67999999999999999994 33 3344457777777777665322111 00 0000000001111 278
Q ss_pred EEEEEcCCC--ChHhHHHhhhc
Q 003325 288 CLVVLDDVW--SLAVLEQLIFR 307 (829)
Q Consensus 288 ~LlVlDdv~--~~~~~~~l~~~ 307 (829)
.++|||+++ +.+.++.+...
T Consensus 67 ~il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHH
T ss_pred eEEEECCcccCCHHHHHHHHHH
Confidence 999999999 45555555543
No 179
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.14 E-value=0.0004 Score=48.98 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=18.4
Q ss_pred CCCEEeccCCcCCCCCccccCCCccccEeeccccc
Q 003325 741 CLKYLNISQCVSLSCLPQGIGNLIRLEKIDMRECS 775 (829)
Q Consensus 741 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 775 (829)
+|++|++++| .++.+|..+++|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 4555666553 344555555666666666666665
No 180
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.012 Score=62.53 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=105.1
Q ss_pred CCcccccccchhhHHHHHHhhcC---CCceEEEEEcCCCCcHHHHHHHHhhccccccccCC-eEEEEEeCCCCCHHHHHH
Q 003325 180 LGNLMGIGMALGKNKVKEMVIGR---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN-RILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~~wv~v~~~~~~~~l~~ 255 (829)
..+..++||+.++..+.+++... +...-+-|.|.+|.|||.+-..++.+ ....... .+.+++...-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHH
Confidence 44567899999999999998643 56778889999999999999999954 3222221 222555554456777888
Q ss_pred HHHHhhcCCCCCCCCCCcchhhHHHHhhc-C-CcEEEEEcCCCChHh------HHHh-hhcCCCceEEEEeeccccc---
Q 003325 256 KVWGFVSGCDSMEPNYVIPHWNLQIQSKL-G-SRCLVVLDDVWSLAV------LEQL-IFRVPGCKTLVVSRFKFST--- 323 (829)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~LlVlDdv~~~~~------~~~l-~~~~~gs~iivTtR~~~~~--- 323 (829)
.|+..+........ ...+......++.. . .-+|+|+|.++.... ..-+ .+..|++++|+..-.....
T Consensus 225 kI~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 88777622221111 11333333334442 2 368999999884321 1111 1345788877654332211
Q ss_pred -----------cccceEEccCCCHHHHHHHHHHhhcC
Q 003325 324 -----------VLNDTYEVELLREDESLSLFCYSAFG 349 (829)
Q Consensus 324 -----------~~~~~~~l~~L~~~e~~~Lf~~~a~~ 349 (829)
.....+..++-+.++-.+++....-.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 23456777888999999999887643
No 181
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.10 E-value=0.0018 Score=58.85 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhc
Q 003325 208 LGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~ 228 (829)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999964
No 182
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.012 Score=62.92 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
....+.|||..|.|||.|++++++. ........++.+++. +.....+...+... ..+ ...+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~-~~~~~~~a~v~y~~s------e~f~~~~v~a~~~~-------~~~---~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE-ALANGPNARVVYLTS------EDFTNDFVKALRDN-------EME---KFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH-HHhhCCCceEEeccH------HHHHHHHHHHHHhh-------hHH---HHHHhh
Confidence 4789999999999999999999962 333333344434322 23333333333211 111 111111
Q ss_pred cCCcEEEEEcCCCCh---HhHHH-hhh---c--CCCceEEEEeeccccc------------cccceEEccCCCHHHHHHH
Q 003325 284 LGSRCLVVLDDVWSL---AVLEQ-LIF---R--VPGCKTLVVSRFKFST------------VLNDTYEVELLREDESLSL 342 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~~~-l~~---~--~~gs~iivTtR~~~~~------------~~~~~~~l~~L~~~e~~~L 342 (829)
.-=++++||++-. +.|+. +.. . ..|..||+|++..... ...-++++++++.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 2338899999842 22222 222 1 1255888888665432 2346899999999999999
Q ss_pred HHHhhcC
Q 003325 343 FCYSAFG 349 (829)
Q Consensus 343 f~~~a~~ 349 (829)
+.+.+..
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9887643
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.09 E-value=0.011 Score=55.74 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=70.2
Q ss_pred chhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccc------------------cccCCeEEEEEeCCC---
Q 003325 189 ALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVT------------------SYFNNRILFLTVSQS--- 247 (829)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~~wv~v~~~--- 247 (829)
+...+.+.+++..+.-...+.++|+.|+||+|+|..+.+.---. ...+. +.|+.-...
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~ 81 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKKS 81 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccch
Confidence 34456666666655556788999999999999999887531111 12222 235544332
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC--hHhHHHhhh---c-CCCceEEEEeeccc
Q 003325 248 PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS--LAVLEQLIF---R-VPGCKTLVVSRFKF 321 (829)
Q Consensus 248 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~--~~~~~~l~~---~-~~gs~iivTtR~~~ 321 (829)
..++++. ++...+.... ..+++=.+|+||++. .+...+++. . .+++.+|++|++..
T Consensus 82 i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 82 IKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp BSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 3444443 4444432211 124566888999985 355555554 2 34788888888776
Q ss_pred cc-----cccceEEccCCC
Q 003325 322 ST-----VLNDTYEVELLR 335 (829)
Q Consensus 322 ~~-----~~~~~~~l~~L~ 335 (829)
.. .....+.+++++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 32 334556666553
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.018 Score=61.34 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=78.8
Q ss_pred cc-cchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEEEe-
Q 003325 186 IG-MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTV- 244 (829)
Q Consensus 186 vg-r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v- 244 (829)
+| -+..++.+.+.+..+.-.+...++|+.|+||||+|+.+.+.---.. .++... ++..
T Consensus 8 ~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~~ 86 (329)
T PRK08058 8 TALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAPD 86 (329)
T ss_pred HhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eeccc
Confidence 44 4445566677776555667789999999999999998864211111 011111 1211
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---c-CCCceEEEEee
Q 003325 245 SQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVVSR 318 (829)
Q Consensus 245 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivTtR 318 (829)
+....++++. ++...+.... ..+.+=++|+|+++.. +....+.. . .+++.+|.+|.
T Consensus 87 ~~~i~id~ir-~l~~~~~~~~-----------------~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 87 GQSIKKDQIR-YLKEEFSKSG-----------------VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cccCCHHHHH-HHHHHHhhCC-----------------cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 1111222221 1112211000 1244556889998843 33444443 2 23666777776
Q ss_pred ccc-cc----cccceEEccCCCHHHHHHHHHHh
Q 003325 319 FKF-ST----VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 319 ~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
+.. +. .....+++.+++.++..+.+...
T Consensus 149 ~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 149 NKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 544 22 44578999999999998888643
No 185
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=2.5e-05 Score=85.89 Aligned_cols=181 Identities=21% Similarity=0.239 Sum_probs=114.7
Q ss_pred cCCccccceeeecccccCCCCCCccccC-CCceEEeeecc--ccccccccccccCCc--cccccccccccccccccCCcc
Q 003325 613 CSNLTNLRSLWLEKVSISQLPKSSIPLK-KMQKISFVLCK--INNSLDQSVVDLPKT--LPCLTELTFDHCDDLMKLPPS 687 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~--~~~~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~lp~~ 687 (829)
+..+..||+|.+.++.+... .++..+. .|++|.-...- +...+.....++... -..|.+.+.++| .+..+..+
T Consensus 105 ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHH
Confidence 34567888888888887652 2232221 24433221100 000000111111111 124556666665 46667777
Q ss_pred ccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccccc-ccCCCCCCEEeccCCcCCCCCccccCCCccc
Q 003325 688 ICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPAR-ICELVCLKYLNISQCVSLSCLPQGIGNLIRL 766 (829)
Q Consensus 688 i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L 766 (829)
+.-++.|+.|||+.|.. +... .+..|++|++|+|+. +.+..+|.. ...+ .|..|.|++| -++.+ .++.+|.+|
T Consensus 183 Lqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhh-hhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhh
Confidence 88899999999999864 4443 788999999999998 456666642 2233 3999999885 55555 468899999
Q ss_pred cEeeccccccCccCC--cccccccccCceeccchhhhh
Q 003325 767 EKIDMRECSQIWSLP--KSVNSLKSLRQVICEEDVSWA 802 (829)
Q Consensus 767 ~~L~l~~~~~~~~lp--~~l~~l~~L~~L~~~~~~~~~ 802 (829)
+.||+++|-+ .... ..+..|..|+.|.+.+|...-
T Consensus 257 ~~LDlsyNll-~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 257 YGLDLSYNLL-SEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hccchhHhhh-hcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999999974 3332 246678899999999986544
No 186
>CHL00176 ftsH cell division protein; Validated
Probab=97.01 E-value=0.0054 Score=70.65 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=88.7
Q ss_pred ccccccchhhHHHHHHh---hcC--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 183 LMGIGMALGKNKVKEMV---IGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+.|.++.++++.+++ ... ...+-|.++|++|.|||+||+++++.. ... ++.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p------~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP------FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC------eeeccHH----
Confidence 34667776666665554 221 224579999999999999999999532 111 3333211
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHH-hhcCCcEEEEEcCCCCh----------------HhHHHhhhc---C---
Q 003325 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ-SKLGSRCLVVLDDVWSL----------------AVLEQLIFR---V--- 308 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~LlVlDdv~~~----------------~~~~~l~~~---~--- 308 (829)
++... ..+. ....+...+. .....+++|++||++.. ..+..+... +
T Consensus 251 ~f~~~----~~g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEM----FVGV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHH----hhhh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11100 0000 0111122222 22567899999999632 112333321 1
Q ss_pred CCceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCC
Q 003325 309 PGCKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKG 371 (829)
Q Consensus 309 ~gs~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g 371 (829)
.+..||.||..... + .....+.++..+.++-.++++.++-.... ........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 23455555544321 1 12367888999999999999888743211 112345677888777
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.00 E-value=0.035 Score=59.28 Aligned_cols=191 Identities=11% Similarity=0.071 Sum_probs=114.2
Q ss_pred cchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHH-HHHhhccccccccCCeEEEEEeCC---CCCHHHHHHHHHHhhc-
Q 003325 188 MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLA-LEVCRDHQVTSYFNNRILFLTVSQ---SPNVEQLRAKVWGFVS- 262 (829)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~~wv~v~~---~~~~~~l~~~i~~~l~- 262 (829)
|.+..++|..||.+ ..-..|.|.||-|+||+.|+ .++..+.+. ++.++..+ ..+...+...++.+++
T Consensus 1 R~e~~~~L~~wL~e-~~~TFIvV~GPrGSGK~elV~d~~L~~r~~-------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE-NPNTFIVVQGPRGSGKRELVMDHVLKDRKN-------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhc-CCCeEEEEECCCCCCccHHHHHHHHhCCCC-------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 45677899999985 34568999999999999999 777754322 22333221 1222333333333332
Q ss_pred ----------------------CCCCCCCCCCcchhhHHH------------------------------HhhcCCcEEE
Q 003325 263 ----------------------GCDSMEPNYVIPHWNLQI------------------------------QSKLGSRCLV 290 (829)
Q Consensus 263 ----------------------~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~Ll 290 (829)
|....-......++...+ +....++=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 111000111111111111 1112336689
Q ss_pred EEcCCCCh-----------HhHHHhhhcCCCceEEEEeeccccc---------cccceEEccCCCHHHHHHHHHHhhcCC
Q 003325 291 VLDDVWSL-----------AVLEQLIFRVPGCKTLVVSRFKFST---------VLNDTYEVELLREDESLSLFCYSAFGQ 350 (829)
Q Consensus 291 VlDdv~~~-----------~~~~~l~~~~~gs~iivTtR~~~~~---------~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 350 (829)
|+|+.... .+|....-...=..||++|-+.... ...+.+.+.-.+++.|.++...+.-..
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 99998632 3566655555567888888776643 334678889999999999998887443
Q ss_pred CCC-------------CC----chhHHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 003325 351 KTI-------------PP----SANENLVKQIVKKCKGLPLALKVIGASLREQ 386 (829)
Q Consensus 351 ~~~-------------~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 386 (829)
... .. .....-....++.+||=-.-+..+++.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 111 00 1223456778889999999999999999854
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.98 E-value=0.014 Score=59.99 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHH
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l 253 (829)
..|.+.|++|+|||++|+.++. ... ..+..++.....+..++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD----RPVMLINGDAELTTSDL 63 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC----CCEEEEeCCccCCHHHH
Confidence 4566899999999999999984 222 22335555554444444
No 189
>PRK08118 topology modulation protein; Reviewed
Probab=96.96 E-value=0.00047 Score=65.45 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccc-cccCCeEEE
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVT-SYFNNRILF 241 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~w 241 (829)
+.|.|+|++|+||||||+.+++...+. -+|+. ++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~-l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch-hhc
Confidence 358999999999999999999754443 34553 344
No 190
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.00019 Score=70.06 Aligned_cols=88 Identities=15% Similarity=-0.004 Sum_probs=55.3
Q ss_pred ccCcCCCcEEEeccccccc----cchhhccCCCCCCEEecccCCcCCccccc----c--cCCCCCCEEeccCCcCCC---
Q 003325 688 ICGLQSLKNLSVTNCHSLQ----ELPADIGKMKSLQILRLYACPHLRTLPAR----I--CELVCLKYLNISQCVSLS--- 754 (829)
Q Consensus 688 i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~--~~l~~L~~L~l~~~~~l~--- 754 (829)
+..+.+|+.|||.+|+... .+...++.++.|+.|++.+|-....-... + ...|+|+.|-..+|..-.
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 4456788888888876533 24456677888899988888665432221 1 235777777777664322
Q ss_pred ---CCccc-cCCCccccEeeccccc
Q 003325 755 ---CLPQG-IGNLIRLEKIDMRECS 775 (829)
Q Consensus 755 ---~lp~~-l~~l~~L~~L~l~~~~ 775 (829)
.+|.. -..++-|..|.+.||.
T Consensus 290 ~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 290 LDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred eeechhhhhhcccHHHHHHHHccCc
Confidence 12222 2467778888888887
No 191
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.91 E-value=0.018 Score=64.42 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=87.7
Q ss_pred CcccccccchhhHHHHHHhhc---C-CCceEEEEEcCCCCcHHHHHHHHhhcc------ccccccCCeEEEEEeCCCCCH
Q 003325 181 GNLMGIGMALGKNKVKEMVIG---R-DDLSVLGICGIGGSGKTTLALEVCRDH------QVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 181 ~~~~~vgr~~~~~~l~~~L~~---~-~~~~vi~I~G~gGiGKTtLA~~v~~~~------~~~~~F~~~~~wv~v~~~~~~ 250 (829)
-+..+-+|+.+..+|..++.. . ...+.+-|.|.+|.|||..+..|.+.- .-...|+. + .++.-.-..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-v-eINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-V-EINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-E-EEcceeecCH
Confidence 345678999999999998853 2 334588999999999999999999631 12344652 2 5555556779
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh--hcCCcEEEEEcCCCC-----hHhHHHhh--hcCCCceEEEEe
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS--KLGSRCLVVLDDVWS-----LAVLEQLI--FRVPGCKTLVVS 317 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~LlVlDdv~~-----~~~~~~l~--~~~~gs~iivTt 317 (829)
.++...|+..+.+....... ..+.+...... -+.+.++|++|+++. .+.+-.|. +..++||++|.+
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~-al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDA-ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHhcccCcccHHH-HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999999776533211 11111111111 145678999998873 33444443 356789877754
No 192
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.89 E-value=0.0054 Score=69.50 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred ccccccchhhHHHHHHhh---c--------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 183 LMGIGMALGKNKVKEMVI---G--------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..++|.+..++++.+++. . ....+-+.++|++|.|||++|+.+++. .... ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~------~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP------FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC------eeeccH----H
Confidence 356777776666655442 1 133456889999999999999999953 2111 233321 1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCChH----------------hHHHhhhc---C---
Q 003325 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSLA----------------VLEQLIFR---V--- 308 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~~----------------~~~~l~~~---~--- 308 (829)
++.. ...+. ....+....+. ....+.+|++||++... .+..+... .
T Consensus 123 ~~~~----~~~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MFVGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HHhcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 10000 01111222222 24567899999996421 11222211 1
Q ss_pred CCceEEEEeeccc---cc-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc-hhHHHHH
Q 003325 309 PGCKTLVVSRFKF---ST-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL-PLALKVI 379 (829)
Q Consensus 309 ~gs~iivTtR~~~---~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 379 (829)
.+..||.||.... .+ .....++++..+.++-.++|..+.-+.... . ......+++.+.|. +-.|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c---chhHHHHHHhCCCCCHHHHHHH
Confidence 2334555554432 11 124578899999999999998776332211 1 11345778888774 4444443
No 193
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.87 E-value=0.0015 Score=66.23 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=43.7
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHH
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWG 259 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~ 259 (829)
++.|..-..-+-++|.|.+|+||||||+.+++ .++.+|+..++++-+++.. ++.++.+.+..
T Consensus 60 ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 60 IDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred eeccCCcccCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 34443334567889999999999999999995 5555677777777776653 45566665543
No 194
>PRK06921 hypothetical protein; Provisional
Probab=96.87 E-value=0.0029 Score=64.93 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (829)
....+.++|.+|+|||+||.++++ .+.......+.+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 456789999999999999999996 333321224446654
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.049 Score=57.29 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCeEE----EEEeCCCCCHHHHHHHHHHhhcCCC
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRIL----FLTVSQSPNVEQLRAKVWGFVSGCD 265 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~~----wv~v~~~~~~~~l~~~i~~~l~~~~ 265 (829)
..+.+.+..+.-...+.+.|+.|+||+++|+.++.----.... .|+.. ++..+..+|+..+. ..
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~- 82 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------PI- 82 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------cc-
Confidence 4566666544556788899999999999999887521110100 11100 00001111110000 00
Q ss_pred CCCCCCCcchhhHHHHh-----hcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEEeeccc-cc----cccceE
Q 003325 266 SMEPNYVIPHWNLQIQS-----KLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVSRFKF-ST----VLNDTY 329 (829)
Q Consensus 266 ~~~~~~~~~~~~~~~~~-----~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTtR~~~-~~----~~~~~~ 329 (829)
.+..-.++.+....+. ..+++=.+|+|+++.. +....+... -+++.+|++|.+.. +. .....+
T Consensus 83 -~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 83 -DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred -cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0000012222222111 1356667889999854 445555542 33667777776554 22 345789
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
.+.++++++..+.+...... ....+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA--------EISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc--------ChHHHHHHHHHcCCCHHHH
Confidence 99999999999888765311 1123566788999999644
No 196
>PRK12377 putative replication protein; Provisional
Probab=96.85 E-value=0.002 Score=64.90 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
+...+.++|++|+|||+||.++++. +..... .+.++++. ++...+-....... .....++.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~-~v~~i~~~------~l~~~l~~~~~~~~---------~~~~~l~~l 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNR--LLAKGR-SVIVVTVP------DVMSRLHESYDNGQ---------SGEKFLQEL 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHcCC-CeEEEEHH------HHHHHHHHHHhccc---------hHHHHHHHh
Confidence 3467899999999999999999963 333222 23455543 44444433321100 011222222
Q ss_pred cCCcEEEEEcCCC
Q 003325 284 LGSRCLVVLDDVW 296 (829)
Q Consensus 284 ~~~~~LlVlDdv~ 296 (829)
.+--||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 456699999995
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.11 Score=54.60 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEEEeC---CCCCH
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS---QSPNV 250 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~---~~~~~ 250 (829)
+++.+.+..+.-...+.+.|+.|+||+++|..+..- -... ..+. +.|+.-. +...+
T Consensus 13 ~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~-llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~v 90 (319)
T PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRA-LLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSITV 90 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH-HcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCCH
Confidence 456666655556678999999999999999988642 1111 1111 1122211 11122
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhhc----CCCceEEEEeeccc-cc
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIFR----VPGCKTLVVSRFKF-ST 323 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~~----~~gs~iivTtR~~~-~~ 323 (829)
+++ +.+...+.... ..+++=.+|+|+++.. +....+... .+++.+|.+|.+.. +.
T Consensus 91 dqi-R~l~~~~~~~~-----------------~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 91 EQI-RQCNRLAQESS-----------------QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHH-HHHHHHHhhCc-----------------ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 222 11211111000 1344557888999843 455555542 33566666666554 32
Q ss_pred ----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 324 ----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 324 ----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
.....+.+.+++.+++.+.+.... .+ ....++..++|.|+.+..+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc------hHHHHHHHcCCCHHHHHHH
Confidence 445788999999999998886431 11 2346789999999977544
No 198
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.77 E-value=0.035 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999953
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.75 E-value=0.01 Score=67.89 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=37.0
Q ss_pred ccccccchhhHHHHHHhhcC----CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR----DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~----~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|-+..++++..++... ...+++.|+|++|+||||+++.++.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788888888888888642 3446799999999999999999995
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.73 E-value=0.00029 Score=68.82 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=17.8
Q ss_pred cCCccccceeeecccccC-CCCCC----ccccCCCceEEeeeccc
Q 003325 613 CSNLTNLRSLWLEKVSIS-QLPKS----SIPLKKMQKISFVLCKI 652 (829)
Q Consensus 613 l~~l~~L~~L~l~~~~i~-~lp~~----~~~l~~L~~L~L~~~~~ 652 (829)
+-+||+|+..+||.|.|. ..|+. +..-..|.+|.+.+|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 334555555555555544 22221 23334455555544443
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.72 E-value=0.0028 Score=62.98 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (829)
.-.++|+|..|+|||||+..+. ......|+ .+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL--~~~~~~f~-~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLL--YYLRHKFD-HIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHH--HhhcccCC-EEEEEec
Confidence 3467899999999999999999 45777885 4545533
No 202
>PRK06526 transposase; Provisional
Probab=96.72 E-value=0.0071 Score=61.49 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
....+.++|++|+|||+||..+.+. .....+. +.|+ +..++...+...... ......+..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~-a~~~g~~--v~f~------t~~~l~~~l~~~~~~----------~~~~~~l~~l 157 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIR-ACQAGHR--VLFA------TAAQWVARLAAAHHA----------GRLQAELVKL 157 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHH-HHHCCCc--hhhh------hHHHHHHHHHHHHhc----------CcHHHHHHHh
Confidence 4456899999999999999999853 2223332 3343 333444444322110 0111122222
Q ss_pred cCCcEEEEEcCCCCh---HhH----HHhh-hcCCCceEEEEeeccc
Q 003325 284 LGSRCLVVLDDVWSL---AVL----EQLI-FRVPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~----~~l~-~~~~gs~iivTtR~~~ 321 (829)
.+.-+|||||+... ... -.+. .......+||||....
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred -ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 23468999999742 111 1222 1222334888887653
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00057 Score=67.73 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=97.8
Q ss_pred cCCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCc-cccCCCceEEeeeccccccccccccccCCc
Q 003325 588 NMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSS-IPLKKMQKISFVLCKINNSLDQSVVDLPKT 666 (829)
Q Consensus 588 ~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 666 (829)
.++.++.|++.+|..+.-. .....+.+||.|++|+++.|++..--... .++.+|+.|.|.++.+.-.-.. .....
T Consensus 69 ~~~~v~elDL~~N~iSdWs-eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~---s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS-EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST---SSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHH-HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh---hhhhc
Confidence 4566777777666543211 11123556777777777777765322222 3566777777765554322111 12234
Q ss_pred cccccccccccccccccC---CccccCc-CCCcEEEeccccccc--cchhhccCCCCCCEEecccCCcCCc-ccccccCC
Q 003325 667 LPCLTELTFDHCDDLMKL---PPSICGL-QSLKNLSVTNCHSLQ--ELPADIGKMKSLQILRLYACPHLRT-LPARICEL 739 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~l---p~~i~~l-~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~l 739 (829)
+|.++.|.++.|. +..+ ...+... +.+++|....|.... ....--.-+|++..+-+..|+.-.. -..+...+
T Consensus 145 lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 145 LPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred chhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 5666666665542 1100 0111111 234444444442110 0000111235566555555542211 11234445
Q ss_pred CCCCEEeccCCcCCCCCc--cccCCCccccEeeccccccCccCCc------ccccccccCceec
Q 003325 740 VCLKYLNISQCVSLSCLP--QGIGNLIRLEKIDMRECSQIWSLPK------SVNSLKSLRQVIC 795 (829)
Q Consensus 740 ~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~lp~------~l~~l~~L~~L~~ 795 (829)
|.+.-|+|+.+ ++..+. +.+..+++|..|.++++++...+.. .++.|++++.|+-
T Consensus 224 p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 224 PSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred Ccchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 55666667664 333322 2366778888888888876544331 3556677776663
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=96.69 E-value=0.04 Score=65.00 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=92.0
Q ss_pred c--CCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEE
Q 003325 212 G--IGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCL 289 (829)
Q Consensus 212 G--~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 289 (829)
| |.++||||+|..++++- ..+.+...++-++.++..+...+...+ ..+....... ..+.-+
T Consensus 571 G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~~~---------------~~~~KV 633 (846)
T PRK04132 571 GNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIREKV-KEFARTKPIG---------------GASFKI 633 (846)
T ss_pred CCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCCcC---------------CCCCEE
Confidence 7 88999999999999642 223344455577888766666544333 3322111100 124579
Q ss_pred EEEcCCCCh--HhHHHhhh---cC-CCceEEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchh
Q 003325 290 VVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSAN 358 (829)
Q Consensus 290 lVlDdv~~~--~~~~~l~~---~~-~gs~iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~ 358 (829)
+|+|+++.. +....+.. .. +.+++|.+|.+.. +. .....+++.+++.++-...+...+-..+- ...
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~ 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELT 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCC
Confidence 999999954 45555554 22 3567776666554 22 44578999999999998888766543221 112
Q ss_pred HHHHHHHHHHcCCchhHHH
Q 003325 359 ENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 359 ~~~~~~i~~~~~g~PLai~ 377 (829)
++....|++.++|.+..+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4578899999999885443
No 205
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.69 E-value=0.024 Score=67.46 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.8
Q ss_pred cccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|.+..++.+.+.+... ....++.++|++|+|||+||+.++.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 345688888888888877521 2345688999999999999999994
No 206
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.00021 Score=70.66 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=101.0
Q ss_pred CccccceeeecccccCCCCCC---ccccCCCceEEeeeccccccccccccccCCcccccccccccccccc-ccCCccccC
Q 003325 615 NLTNLRSLWLEKVSISQLPKS---SIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDL-MKLPPSICG 690 (829)
Q Consensus 615 ~l~~L~~L~l~~~~i~~lp~~---~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~lp~~i~~ 690 (829)
..++++.|||.+|.|++..+- ..+|+.|++|+|+.|.+...+... +....+|++|-|.+.... ....+.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhhc
Confidence 467899999999998865432 457889999999988776544332 123567888877765322 234455667
Q ss_pred cCCCcEEEeccccccccch--hhccCC-CCCCEEecccCCcCCc--ccccccCCCCCCEEeccCCcCCC-CCccccCCCc
Q 003325 691 LQSLKNLSVTNCHSLQELP--ADIGKM-KSLQILRLYACPHLRT--LPARICELVCLKYLNISQCVSLS-CLPQGIGNLI 764 (829)
Q Consensus 691 l~~L~~L~l~~~~~~~~lp--~~l~~l-~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~ 764 (829)
++.++.|.++.|+.-+-.- ..+... +.+++|.+..|....- .-.--.-+|++..+.+..|+.-+ .--.+...++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 7777777777763211100 111111 2344454444432110 11111235667767666664322 1123345566
Q ss_pred cccEeeccccccCccCC--cccccccccCceeccchh
Q 003325 765 RLEKIDMRECSQIWSLP--KSVNSLKSLRQVICEEDV 799 (829)
Q Consensus 765 ~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~~~~~~ 799 (829)
.+..|+|+.++ +.+.. ..+..+++|..|...++.
T Consensus 225 ~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 225 SLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence 67778888777 44333 245566677666666553
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.0049 Score=58.33 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCC
Q 003325 207 VLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (829)
++.|+|++|+||||+|..++.. ... ....+.|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~-~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IAT-KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHh-cCCEEEEEECCcchH
Confidence 3689999999999999999853 222 334566777765543
No 208
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.66 E-value=0.0044 Score=62.87 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=41.0
Q ss_pred HHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCeEEEEEeCCCCCHHHHHH
Q 003325 195 VKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 195 l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~l~~ 255 (829)
+-++|.+. ..-.++.|+|++|+|||++|.+++-.......+ ...++|++....++..++..
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 44444432 456899999999999999999997422222211 24677999888777665544
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=96.66 E-value=0.0055 Score=62.71 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+.|+|++|+|||+||..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345678999999999999999975
No 210
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.091 Score=55.87 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCeE----EEEEeCCCCCHHHHHHHHHHhhcCCC
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRI----LFLTVSQSPNVEQLRAKVWGFVSGCD 265 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~----~wv~v~~~~~~~~l~~~i~~~l~~~~ 265 (829)
+++.+.+..+.-...+.+.|+.|+||+|+|..++.----.+.- +|+. -++..+..+|+..+. . .
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p-~ 82 (334)
T PRK07993 12 EQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------P-E 82 (334)
T ss_pred HHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------c-c
Confidence 5666777655667788999999999999999876421000000 1110 000011111110000 0 0
Q ss_pred CCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCCC--hHhHHHhhhc----CCCceEEEEeeccc-cc----cccceE
Q 003325 266 SMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVWS--LAVLEQLIFR----VPGCKTLVVSRFKF-ST----VLNDTY 329 (829)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~~--~~~~~~l~~~----~~gs~iivTtR~~~-~~----~~~~~~ 329 (829)
.....-.++++....+.+ .+++=.+|+|+++. .+....+... .+++.+|.+|.+.. +. ...+.+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 000000111222222211 35667889999884 3445555542 33666666666554 32 345678
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 003325 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALK 377 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 377 (829)
.+.+++.++..+.+.... + ..++.+..++..++|.|..+.
T Consensus 163 ~~~~~~~~~~~~~L~~~~-~-------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 163 YLAPPPEQYALTWLSREV-T-------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cCCCCCHHHHHHHHHHcc-C-------CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999988775432 1 112346788999999996443
No 211
>PRK10536 hypothetical protein; Provisional
Probab=96.65 E-value=0.01 Score=59.28 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=72.5
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC----------CCCHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ----------SPNVEQ 252 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~----------~~~~~~ 252 (829)
..+.++.........++.. ..+|.+.|++|.|||+||.++..+.-..+.|. ++ .++-+. +.+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~-kI-iI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVD-RI-IVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee-EE-EEeCCCCCchhhhCcCCCCHHH
Confidence 3456788788888887763 35999999999999999999885322244554 33 333111 012211
Q ss_pred HH----H---HHHHhhcCCCCCCCC--CCcchhh-HHHHhhcCCc---EEEEEcCCCCh--HhHHHhhh-cCCCceEEEE
Q 003325 253 LR----A---KVWGFVSGCDSMEPN--YVIPHWN-LQIQSKLGSR---CLVVLDDVWSL--AVLEQLIF-RVPGCKTLVV 316 (829)
Q Consensus 253 l~----~---~i~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~~~---~LlVlDdv~~~--~~~~~l~~-~~~gs~iivT 316 (829)
-. . +.+..+.+....... .....+. .-+..++++. -+||+|++.+. .+...+.. .+++|++|+|
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEe
Confidence 11 1 111221111000000 0000000 1122345654 49999999964 45555554 4679999998
Q ss_pred eecccc
Q 003325 317 SRFKFS 322 (829)
Q Consensus 317 tR~~~~ 322 (829)
.-...+
T Consensus 210 GD~~Qi 215 (262)
T PRK10536 210 GDITQC 215 (262)
T ss_pred CChhhc
Confidence 765543
No 212
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.067 Score=59.62 Aligned_cols=120 Identities=22% Similarity=0.248 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-------CCHHHHHHHHHHhhcCCCCCCCCCCcch
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-------PNVEQLRAKVWGFVSGCDSMEPNYVIPH 275 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-------~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 275 (829)
+..+-|..+|++|.|||++|+++++. ..-. |+.++.+ .+-++.+++++.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne--~~~n------FlsvkgpEL~sk~vGeSEr~ir~iF~kA-------------- 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE--AGMN------FLSVKGPELFSKYVGESERAIREVFRKA-------------- 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh--hcCC------eeeccCHHHHHHhcCchHHHHHHHHHHH--------------
Confidence 56788999999999999999999962 2223 3344321 12233333333332
Q ss_pred hhHHHHhhcCCcEEEEEcCCCChH-------------hHHHhhhc----CCCceEE-EEeecc--ccc-------cccce
Q 003325 276 WNLQIQSKLGSRCLVVLDDVWSLA-------------VLEQLIFR----VPGCKTL-VVSRFK--FST-------VLNDT 328 (829)
Q Consensus 276 ~~~~~~~~~~~~~LlVlDdv~~~~-------------~~~~l~~~----~~gs~ii-vTtR~~--~~~-------~~~~~ 328 (829)
.+--.+++++|.++... .+..+... .....|+ |...++ .+. ..++.
T Consensus 524 -------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~i 596 (693)
T KOG0730|consen 524 -------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRI 596 (693)
T ss_pred -------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCccccee
Confidence 13346888888887431 23333322 2222333 333333 222 24577
Q ss_pred EEccCCCHHHHHHHHHHhhcCCC
Q 003325 329 YEVELLREDESLSLFCYSAFGQK 351 (829)
Q Consensus 329 ~~l~~L~~~e~~~Lf~~~a~~~~ 351 (829)
+.++.-+.+...++|+.++-+..
T Consensus 597 iyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 597 IYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EeecCccHHHHHHHHHHHHhcCC
Confidence 88998899999999999984433
No 213
>PRK07261 topology modulation protein; Provisional
Probab=96.61 E-value=0.004 Score=59.44 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0015 Score=58.37 Aligned_cols=21 Identities=52% Similarity=0.657 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999995
No 215
>PRK08181 transposase; Validated
Probab=96.59 E-value=0.0065 Score=62.15 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...-+.++|++|+|||.||.++.+. -....+ .+.|+++ .++...+...... .......+.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~-a~~~g~--~v~f~~~------~~L~~~l~~a~~~----------~~~~~~l~~l 165 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLA-LIENGW--RVLFTRT------TDLVQKLQVARRE----------LQLESAIAKL 165 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHH-HHHcCC--ceeeeeH------HHHHHHHHHHHhC----------CcHHHHHHHH
Confidence 3456899999999999999999852 222222 3445543 4455544332110 0111122222
Q ss_pred cCCcEEEEEcCCCCh---HhH----HHhhh-cCCCceEEEEeeccc
Q 003325 284 LGSRCLVVLDDVWSL---AVL----EQLIF-RVPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~---~~~----~~l~~-~~~gs~iivTtR~~~ 321 (829)
.+.-||||||+... +.+ -.+.. ...+..+||||....
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 23459999999632 111 12221 222356888887653
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.59 E-value=0.54 Score=56.86 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=36.1
Q ss_pred cccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|.+..++.+.+.+... ....++.++|++|+|||++|+.+++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345789999888888877521 1235788999999999999999984
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.0084 Score=58.42 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
++||.++|+.|+||||.+.+++.. .+.+ ..++..++....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~-~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLK-GKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHT-T--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--Hhhc-cccceeecCCCC
Confidence 479999999999999998888843 3333 556767877543
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.56 E-value=0.0059 Score=61.46 Aligned_cols=57 Identities=19% Similarity=0.425 Sum_probs=39.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l 253 (829)
..+-++|.++ ..-.++.|+|++|+|||++|.+++.. .... ..+++|++.. .+....+
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~-~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKN-GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHC-CCeEEEEECC-CCCHHHH
Confidence 3455566433 45679999999999999999999843 3222 2456799887 5555544
No 219
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.56 E-value=0.0076 Score=58.53 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=60.0
Q ss_pred cchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC----CC--CCHHHH--------
Q 003325 188 MALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS----QS--PNVEQL-------- 253 (829)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~----~~--~~~~~l-------- 253 (829)
+..+.....+.|. ...++.+.|++|.|||.||.+..-+.-..+.|+ +++++.-. +. +-+-++
T Consensus 5 ~~~~Q~~~~~al~---~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL---NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH---H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH---hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344455666666 567999999999999999998886554457776 44344211 10 111111
Q ss_pred --HHHHHHhhcCCCCCCCCCCcchhh-------HHHHhhcCC---cEEEEEcCCCCh--HhHHHhhhc-CCCceEEEEee
Q 003325 254 --RAKVWGFVSGCDSMEPNYVIPHWN-------LQIQSKLGS---RCLVVLDDVWSL--AVLEQLIFR-VPGCKTLVVSR 318 (829)
Q Consensus 254 --~~~i~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~LlVlDdv~~~--~~~~~l~~~-~~gs~iivTtR 318 (829)
+.+.+..+.+.. ..+... .-...++|+ ...||+|++.+. +++..+... +.|||+|++--
T Consensus 81 ~p~~d~l~~~~~~~------~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELFGKE------KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS-TT------CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHhChH------hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecC
Confidence 112222221110 111000 001123443 579999999864 678777764 56999999876
Q ss_pred ccc
Q 003325 319 FKF 321 (829)
Q Consensus 319 ~~~ 321 (829)
...
T Consensus 155 ~~Q 157 (205)
T PF02562_consen 155 PSQ 157 (205)
T ss_dssp ---
T ss_pred cee
Confidence 554
No 220
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.54 E-value=0.0056 Score=58.67 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=64.0
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcC
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSG 263 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~ 263 (829)
.+||-++.++++.-+.. +++..-+.|.||+|+||||-+..+++ .-....+...++=.+.|+..+++.+...|-.....
T Consensus 28 dIVGNe~tv~rl~via~-~gnmP~liisGpPG~GKTTsi~~LAr-~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK-EGNMPNLIISGPPGTGKTTSILCLAR-ELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HhhCCHHHHHHHHHHHH-cCCCCceEeeCCCCCchhhHHHHHHH-HHhChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 45888877777655444 56778888999999999998888875 23444555566667777776666555444222111
Q ss_pred CCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh
Q 003325 264 CDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL 298 (829)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~ 298 (829)
.. .+ .++.-.+|||..++.
T Consensus 106 kv----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 106 KV----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred hc----------------cCCCCceeEEEeeccchh
Confidence 10 11 466678999999975
No 221
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.53 E-value=0.088 Score=58.77 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS- 282 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~- 282 (829)
..+-|.++|++|.|||.+|+++++. ..-. .+-+..+. +.....+ .....+...++.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~----~~~l~~~~----------l~~~~vG-------ese~~l~~~f~~A 314 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLP----LLRLDVGK----------LFGGIVG-------ESESRMRQMIRIA 314 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCC----EEEEEhHH----------hcccccC-------hHHHHHHHHHHHH
Confidence 4577999999999999999999963 2211 12222221 0000000 001111111111
Q ss_pred hcCCcEEEEEcCCCChH--------------hHHHhhh----cCCCceEEEEeecccc---c-----cccceEEccCCCH
Q 003325 283 KLGSRCLVVLDDVWSLA--------------VLEQLIF----RVPGCKTLVVSRFKFS---T-----VLNDTYEVELLRE 336 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~~--------------~~~~l~~----~~~gs~iivTtR~~~~---~-----~~~~~~~l~~L~~ 336 (829)
....+++|++|+++..- ....+.. ...+--||.||..... + ..+..+.++..+.
T Consensus 315 ~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 315 EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 14578999999997320 0111111 1122334445544431 1 1235788999999
Q ss_pred HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003325 337 DESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 337 ~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
++-.++|..+.-+....... ......+++.+.|.
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~Gf 428 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCC
Confidence 99999998886443211101 11245666666664
No 222
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.006 Score=68.11 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS 282 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 282 (829)
..-++..+.|++|+||||||..++. +..| .+.=++.|+......+-..|...+......+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAk----qaGY--sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAK----QAGY--SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHH----hcCc--eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 4568999999999999999999994 2344 45578999998888888888777644332111
Q ss_pred hcCCcEEEEEcCCCC
Q 003325 283 KLGSRCLVVLDDVWS 297 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~ 297 (829)
.+++.-||+|.++-
T Consensus 385 -dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDG 398 (877)
T ss_pred -CCCcceEEEecccC
Confidence 36788899999984
No 223
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0013 Score=64.51 Aligned_cols=82 Identities=24% Similarity=0.222 Sum_probs=38.6
Q ss_pred cccccccccccccccccCCccccCcCCCcEEEeccc--cccccchhhccCCCCCCEEecccCCcC--CcccccccCCCCC
Q 003325 667 LPCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNC--HSLQELPADIGKMKSLQILRLYACPHL--RTLPARICELVCL 742 (829)
Q Consensus 667 ~~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~l~~l~~L~~L~l~~~~~l--~~lp~~~~~l~~L 742 (829)
+..|+.|++.++... .+- .+-.|++|++|.++.| +....++....++|+|++|++++|..- ..++ .+..+.+|
T Consensus 42 ~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENL 118 (260)
T ss_pred ccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcch
Confidence 455555555554322 111 1334556666666665 333444444444566666666664321 1111 13344555
Q ss_pred CEEeccCCc
Q 003325 743 KYLNISQCV 751 (829)
Q Consensus 743 ~~L~l~~~~ 751 (829)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555554
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.039 Score=59.49 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=76.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH-
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ- 281 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~- 281 (829)
.....+.+.|++|+|||+||..++ ..+.|+ ||.+-.+.++.-+ ........+....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA----~~S~FP----FvKiiSpe~miG~--------------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIA----LSSDFP----FVKIISPEDMIGL--------------SESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHH----hhcCCC----eEEEeChHHccCc--------------cHHHHHHHHHHHHHH
Confidence 356678899999999999999999 457787 3333211110000 00000001111111
Q ss_pred hhcCCcEEEEEcCCCChHhHHHhhhc---------------C-C-CceEEE--Eeeccccc-------cccceEEccCCC
Q 003325 282 SKLGSRCLVVLDDVWSLAVLEQLIFR---------------V-P-GCKTLV--VSRFKFST-------VLNDTYEVELLR 335 (829)
Q Consensus 282 ~~~~~~~LlVlDdv~~~~~~~~l~~~---------------~-~-gs~iiv--TtR~~~~~-------~~~~~~~l~~L~ 335 (829)
..+..--.||+||+...-+|-.+.|. . | |-|.+| ||....+. .-...|+++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 12445568999999876555544442 1 2 555544 33333332 334688999988
Q ss_pred H-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHc
Q 003325 336 E-DESLSLFCYSAFGQKTIPPSANENLVKQIVKKC 369 (829)
Q Consensus 336 ~-~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~ 369 (829)
. ++..+.++..- ...++..+.++.+.+.+|
T Consensus 674 ~~~~~~~vl~~~n----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc----CCCcchhHHHHHHHhccc
Confidence 7 67777776543 112233444566666666
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.006 Score=58.51 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...-+.++|++|+|||.||.++.+. -+...+ .+.|+++ .+++..+-.. .. . .......+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g~--~v~f~~~------~~L~~~l~~~----~~---~---~~~~~~~~~l 106 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE-AIRKGY--SVLFITA------SDLLDELKQS----RS---D---GSYEELLKRL 106 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEEH------HHHHHHHHCC----HC---C---TTHCHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH-hccCCc--ceeEeec------Cceecccccc----cc---c---cchhhhcCcc
Confidence 4567999999999999999999863 333343 3456654 3444444321 11 0 1112233333
Q ss_pred cCCcEEEEEcCCCCh--HhHH-----Hhh-hcCCCceEEEEeeccc
Q 003325 284 LGSRCLVVLDDVWSL--AVLE-----QLI-FRVPGCKTLVVSRFKF 321 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~--~~~~-----~l~-~~~~gs~iivTtR~~~ 321 (829)
. +-=||||||+-.. ..|. .+. .......+||||.-..
T Consensus 107 ~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~ 151 (178)
T PF01695_consen 107 K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSP 151 (178)
T ss_dssp H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred c-cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCch
Confidence 3 3457889999743 2221 111 1112346888887543
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.45 E-value=0.0056 Score=60.82 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=36.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
..-+++.|+|++|+|||++|.+++. ..... ...++|++... +...++.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~-g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQ-GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhC-CCeEEEEECCC-CCHHHHHHH
Confidence 4568999999999999999999884 33233 23567998876 666665543
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.40 E-value=0.037 Score=66.06 Aligned_cols=45 Identities=31% Similarity=0.257 Sum_probs=35.9
Q ss_pred ccccccchhhHHHHHHhhcC------------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+.|.+..++++.+++... ...+.|.++|++|+||||||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 34679999998888876321 3456789999999999999999995
No 228
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0053 Score=57.82 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=17.9
Q ss_pred ccceeeecccccCCCCCCccccCCCceEEeeeccc
Q 003325 618 NLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 618 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 652 (829)
+...+||++|.+..++ .+..++.|.+|.+..|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRI 76 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcc
Confidence 4456666666655443 233445555555554444
No 229
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.041 Score=62.64 Aligned_cols=44 Identities=30% Similarity=0.232 Sum_probs=35.4
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~-~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG-PNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3578998888888877653 3445668999999999999999985
No 230
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.37 E-value=0.017 Score=58.23 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=41.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccccc-----CCeEEEEEeCCCCCHHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF-----NNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~~~~wv~v~~~~~~~~l~~ 255 (829)
..+-++|.++ ..-.++.|+|++|+|||+||..++.. ....- +..++|++....++...+.+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 3445555433 56789999999999999999998742 22221 14567998887777665543
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.36 E-value=0.0037 Score=65.68 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=38.8
Q ss_pred cccccchhhHHHHHHhhc-----CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 184 MGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.++|.++.++++++++.. +..-+++.++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999854 234688999999999999999999964
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.17 Score=58.76 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=33.5
Q ss_pred cccccchhhHHHHHHhhc--------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIG--------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~--------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|-+..++.+.+.+.. +....+....||.|||||.||+.++.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 457777777777776642 13456778899999999999999983
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.046 Score=65.25 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=87.0
Q ss_pred cccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
.+.|.+..++++.+.+.- -...+-|.++|++|.|||++|+++++. ....| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f------i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF------IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE------EEEehH----
Confidence 456777777777666531 123556889999999999999999963 22222 222211
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh--------------HhHHHhhhcC------CC
Q 003325 252 QLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL--------------AVLEQLIFRV------PG 310 (829)
Q Consensus 252 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~--------------~~~~~l~~~~------~g 310 (829)
+ ++....+ .....+...... ....+++|++|+++.. .....+.... .+
T Consensus 522 ~----l~~~~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 E----ILSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred H----HhhcccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 1111000 011112222222 2456799999998632 1122232211 12
Q ss_pred ceEEEEeecccc---c-----cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCch
Q 003325 311 CKTLVVSRFKFS---T-----VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLP 373 (829)
Q Consensus 311 s~iivTtR~~~~---~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 373 (829)
.-||.||..... + .....+.++..+.++-.++|..+.-+....+.. ....+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCC
Confidence 334445543332 1 234678899999999999998665322211111 2456777777643
No 234
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0014 Score=64.37 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=29.3
Q ss_pred hhcCCCCceEEEccccCCccccCCCcccCCccccceeeeccc--ccC-CCCCCccccCCCceEEeeeccc
Q 003325 586 IENMEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKV--SIS-QLPKSSIPLKKMQKISFVLCKI 652 (829)
Q Consensus 586 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~L~~~~~ 652 (829)
...+.+|..|.+.++.. ..+..+..|++|++|.++.| ++. .++.....+++|++|+++.|++
T Consensus 39 ~d~~~~le~ls~~n~gl-----tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGL-----TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccchhhhhhhccce-----eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33444555555444432 22233445566666666666 322 3333333345555555555443
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.01 Score=62.65 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (829)
...+.++|++|+|||.||.++++. -+...+ .+.++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~-l~~~g~--~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKE-LLDRGK--SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH-HHHCCC--eEEEEEH
Confidence 377999999999999999999963 233333 3446554
No 236
>PLN03194 putative disease resistance protein; Provisional
Probab=96.32 E-value=0.00014 Score=67.83 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHHHHHhhhhccccchhh-hccchhhhHhhhhHHhhhHHHHHHHH
Q 003325 67 HLSETLKDGIELCRKVLASTRWNVYKNLQLARKMEKLEKKVSRFLNGPMQAHV-LADVHHMRFETAERFDRMEGSARRLE 145 (829)
Q Consensus 67 ~~~~~l~~~~~~~~d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 145 (829)
.-+++-+-++...+..|+++.||+ .|+++++++. ....|+||.| |+||+++.... ...++++
T Consensus 76 ~AIeeSri~IvVfS~~Ya~S~WCL---dEL~~I~e~~------~~ViPIFY~VdPsdVr~q~~~~--------~~~e~v~ 138 (187)
T PLN03194 76 SAIRNCKVGVAVFSPRYCESYFCL---HELALIMESK------KRVIPIFCDVKPSQLRVVDNGT--------CPDEEIR 138 (187)
T ss_pred HHHHhCeEEEEEECCCcccchhHH---HHHHHHHHcC------CEEEEEEecCCHHHhhccccCC--------CCHHHHH
Confidence 334444444555678899999999 6788888762 1357999999 89988862211 1237899
Q ss_pred HHhhccccccCCCCcc
Q 003325 146 QRLGAMRIGVGGGGWV 161 (829)
Q Consensus 146 ~~~~~~~~~~~~~~~~ 161 (829)
+|+.|+....+.+||.
T Consensus 139 ~Wr~AL~~va~l~G~~ 154 (187)
T PLN03194 139 RFNWALEEAKYTVGLT 154 (187)
T ss_pred HHHHHHHHHhcccccc
Confidence 9999998777777764
No 237
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.082 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=37.3
Q ss_pred ccccccchhhHHHHHHhhcC-----------CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 183 LMGIGMALGKNKVKEMVIGR-----------DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-----------~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..+=|.+....++.+++..- ...+-|.++|++|.|||.||+++++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 35568888888888887431 45678999999999999999999963
No 238
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.25 E-value=0.063 Score=63.26 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=36.2
Q ss_pred ccccccchhhHHHHHHhhc--------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIG--------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~--------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|-+..++.+.+.+.. ......+.++|++|+|||++|+.++.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 4578989888888888752 12345789999999999999999984
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.27 Score=52.23 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCC--hHhHHHhhhc----CCCceEEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHhhcCCCCC
Q 003325 285 GSRCLVVLDDVWS--LAVLEQLIFR----VPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYSAFGQKTI 353 (829)
Q Consensus 285 ~~~~LlVlDdv~~--~~~~~~l~~~----~~gs~iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 353 (829)
+++=++|+|+++. .+....+... .+++.+|.+|.+.. +. .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 4556888899984 4556666542 33666665555543 33 345789999999999998887641 1
Q ss_pred CCchhHHHHHHHHHHcCCchhHHHHH
Q 003325 354 PPSANENLVKQIVKKCKGLPLALKVI 379 (829)
Q Consensus 354 ~~~~~~~~~~~i~~~~~g~PLai~~~ 379 (829)
+ . ...++..++|.|..+..+
T Consensus 206 ~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755443
No 240
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.15 E-value=0.056 Score=55.19 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=92.1
Q ss_pred cccccchhhHHHHHHhhcC---CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH-HHHHHHHH
Q 003325 184 MGIGMALGKNKVKEMVIGR---DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE-QLRAKVWG 259 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~-~l~~~i~~ 259 (829)
.++|-.++..++.+++... ++..-+.|+||.|.|||+|.-....| .+.|....+-|...+..-.+ -.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 4688888888888888643 56667889999999999999888754 44555554455554433222 23344444
Q ss_pred hh----cCCCCCCCCCCcchhhHHHHhh------cCCcEEEEEcCCCChH----h--HHHhh---h--cCCCceEEEEee
Q 003325 260 FV----SGCDSMEPNYVIPHWNLQIQSK------LGSRCLVVLDDVWSLA----V--LEQLI---F--RVPGCKTLVVSR 318 (829)
Q Consensus 260 ~l----~~~~~~~~~~~~~~~~~~~~~~------~~~~~LlVlDdv~~~~----~--~~~l~---~--~~~gs~iivTtR 318 (829)
++ .... ....+-.+.+...+..+ .+-++..|+|.++-.. | +-.+. . ..|=+-|-+|||
T Consensus 102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 43 2221 11222223333333333 2346888998887321 1 11111 1 456778889999
Q ss_pred ccccc---------ccc-ceEEccCCCHHHHHHHHHHhh
Q 003325 319 FKFST---------VLN-DTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 319 ~~~~~---------~~~-~~~~l~~L~~~e~~~Lf~~~a 347 (829)
-.... ... .++-++.++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 76543 111 244556666677777776554
No 241
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.052 Score=60.14 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=104.9
Q ss_pred cccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccccc--cc-CCeEEEEEeC--CCCCHHHHHHH
Q 003325 182 NLMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTS--YF-NNRILFLTVS--QSPNVEQLRAK 256 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F-~~~~~wv~v~--~~~~~~~l~~~ 256 (829)
...++|-+.-...|.+.+....-..-....|+-|+||||+|+-++.--.-.. .. +|+..-.|-+ .+..++-+..+
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiD 94 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEID 94 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhh
Confidence 3456999888888888887655566678899999999999998874211111 00 1111111110 00000000000
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHhh-----cCCcEEEEEcCCC--ChHhHHHhhhcC----CCceEEEEeeccc-cc-
Q 003325 257 VWGFVSGCDSMEPNYVIPHWNLQIQSK-----LGSRCLVVLDDVW--SLAVLEQLIFRV----PGCKTLVVSRFKF-ST- 323 (829)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LlVlDdv~--~~~~~~~l~~~~----~gs~iivTtR~~~-~~- 323 (829)
.+ ....++......+.. .++.=..|+|.|+ +...|.++.... +.-+.|..|++.. +.
T Consensus 95 aA----------Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 95 AA----------SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred hh----------hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 00 111222333333221 4566688899998 456788887643 2555566565554 33
Q ss_pred ---cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchh
Q 003325 324 ---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPL 374 (829)
Q Consensus 324 ---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PL 374 (829)
...+.|.+..++.++-...+...+-.+.- ..+++...-|++..+|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 55688999999999888888877744332 2234566777777777554
No 242
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.12 E-value=0.016 Score=59.24 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=46.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCCCCCHHHHHHHHHHh
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (829)
+.+-++|.++ ..-.+.=|+|++|+|||.||..++-...+. +....+++|++-...+...++.+ |++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 4556666433 455788999999999999998887332222 23456788999999999888764 4443
No 243
>PRK04296 thymidine kinase; Provisional
Probab=96.11 E-value=0.0086 Score=58.27 Aligned_cols=111 Identities=15% Similarity=-0.027 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (829)
.++.|.|+.|.||||+|..++. +...+- .+++.+. ..++.......+...++......................+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcC-CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCC
Confidence 4778999999999999998885 333332 2443331 1112222222334444211110000011111111111223
Q ss_pred CcEEEEEcCCCC--hHhHHHhhh--cCCCceEEEEeeccc
Q 003325 286 SRCLVVLDDVWS--LAVLEQLIF--RVPGCKTLVVSRFKF 321 (829)
Q Consensus 286 ~~~LlVlDdv~~--~~~~~~l~~--~~~gs~iivTtR~~~ 321 (829)
+.-+||+|.+.- .++..++.. ...|..||+|.+...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 556899999974 344444443 235889999998854
No 244
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.10 E-value=0.045 Score=51.88 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=30.6
Q ss_pred cccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 186 IGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 186 vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
||....+.++++.+..- .....|.|+|..|.||+.+|+.+++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 67777777777776432 3336677999999999999999996
No 245
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.11 Score=59.85 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=97.1
Q ss_pred cccccccchhhHHHHHH---hhcC--------CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCH
Q 003325 182 NLMGIGMALGKNKVKEM---VIGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNV 250 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~---L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~ 250 (829)
...+.|-++.+++|.++ |..+ .-++-+.++|++|.|||-||++++-.. ..+ |++++..-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----gVP----F~svSGSE-- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVP----FFSVSGSE-- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----CCc----eeeechHH--
Confidence 34567777766666665 4332 346788999999999999999999532 222 44444321
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcchhhHHHH-hhcCCcEEEEEcCCCCh-----------------HhHHHhhh---cCC
Q 003325 251 EQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ-SKLGSRCLVVLDDVWSL-----------------AVLEQLIF---RVP 309 (829)
Q Consensus 251 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~LlVlDdv~~~-----------------~~~~~l~~---~~~ 309 (829)
..+.+.+. .......... .....++.+.+|+++.. ..+.++.. ++.
T Consensus 380 ------FvE~~~g~-------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 380 ------FVEMFVGV-------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ------HHHHhccc-------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11111000 0111111111 12566888888887632 12444443 222
Q ss_pred --CceEEEE-eeccccc--------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHH
Q 003325 310 --GCKTLVV-SRFKFST--------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLAL 376 (829)
Q Consensus 310 --gs~iivT-tR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai 376 (829)
+..|++. |....+. ..++.+.++.-+.....++|..++-+.... ....++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2234443 3333332 235678899999999999999998554432 23344666 999998887654
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.06 E-value=0.081 Score=64.05 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred ccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..++.+.+.+... ....++.+.|++|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999998888532 1245788999999999999999994
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0058 Score=55.41 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccc-cCCeEEEE
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFL 242 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~~wv 242 (829)
--|.|.|++|+||||+++.+.+ .++.. |...-||.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 4589999999999999999995 34333 54444443
No 248
>PRK06696 uridine kinase; Validated
Probab=95.97 E-value=0.0079 Score=60.34 Aligned_cols=40 Identities=28% Similarity=0.237 Sum_probs=31.1
Q ss_pred cchhhHHHHHHhhc--CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 188 MALGKNKVKEMVIG--RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 188 r~~~~~~l~~~L~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
|..-+++|.+.+.. .+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34445666666653 35678999999999999999999994
No 249
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.00038 Score=68.29 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCCCceEEEccccCCccccCCCcccCCccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccc
Q 003325 589 MEKLRALIVINYSTSNAALGNFSVCSNLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLP 668 (829)
Q Consensus 589 l~~Lr~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 668 (829)
+.+.+.|++.+|+. .+++.+.+|+.|++|.|+-|.|+++. .+..|++|+.|.|..|.+...-. ....+++|
T Consensus 18 l~~vkKLNcwg~~L-----~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldE---L~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-----DDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDE---LEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCc-----cHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHH---HHHHhcCc
Confidence 45677778777764 34556778888999999888888775 36677888888888776543211 12236688
Q ss_pred cccccccccccccccCCc-----cccCcCCCcEEE
Q 003325 669 CLTELTFDHCDDLMKLPP-----SICGLQSLKNLS 698 (829)
Q Consensus 669 ~L~~L~L~~~~~~~~lp~-----~i~~l~~L~~L~ 698 (829)
+|+.|.|..|...+.-+. .+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888887765554432 245577777776
No 250
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.15 Score=49.71 Aligned_cols=138 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHH
Q 003325 187 GMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 187 gr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (829)
|.+..+++|.+.+.- -..++-+.++|++|.|||-||++|+++ . .+.|+.||... +.
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t-~c~firvsgse----lv 218 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------T-DCTFIRVSGSE----LV 218 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------c-ceEEEEechHH----HH
Confidence 345556666665421 145678899999999999999999953 2 24467777531 11
Q ss_pred HHHHHhhcCCCCCCCCCCcchhhHH-HHhhcCCcEEEEEcCCCCh--------------------HhHHHhhh--cCCCc
Q 003325 255 AKVWGFVSGCDSMEPNYVIPHWNLQ-IQSKLGSRCLVVLDDVWSL--------------------AVLEQLIF--RVPGC 311 (829)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~LlVlDdv~~~--------------------~~~~~l~~--~~~gs 311 (829)
++.. +.. ..-.... .-....-+-.++.|.+++. +.+.++-+ +....
T Consensus 219 qk~i----geg-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 219 QKYI----GEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHh----hhh-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 1111 100 0000000 0111345677888887642 11222221 12356
Q ss_pred eEEEEeeccccc--------cccceEEccCCCHHHHHHHHHHhh
Q 003325 312 KTLVVSRFKFST--------VLNDTYEVELLREDESLSLFCYSA 347 (829)
Q Consensus 312 ~iivTtR~~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~a 347 (829)
+||+.|..-.+. ..++-++.++-+++.-.++++-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 788766544432 234567777777777777776654
No 251
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.90 E-value=0.019 Score=60.34 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=46.8
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCCCCCHHHHHHHHHHhh
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (829)
..+-++|.++ ..-+++-|+|++|+|||+||..++-..... ..-...++|++....+.++++.+. ++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~-a~~~ 154 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI-AERF 154 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH-HHHc
Confidence 4455566533 456789999999999999998876322221 122356789999999998887653 4443
No 252
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.008 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999964
No 253
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.90 E-value=0.073 Score=54.57 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=65.5
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEE---EeCCCCCHHHHHHHHHHhhcCCCC--
Q 003325 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFL---TVSQSPNVEQLRAKVWGFVSGCDS-- 266 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv---~v~~~~~~~~l~~~i~~~l~~~~~-- 266 (829)
.+++...+.......-++|+|+.|.|||||.+.++. .+... .+.+ ++ .+....+..+ +......-..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i-~~~g~~v~~~d~~~e----i~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQL-GLRGKKVGIVDERSE----IAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceE-EECCEEeecchhHHH----HHHHhccccccc
Confidence 344555555445567899999999999999999994 33222 2222 22 1111111122 2222111100
Q ss_pred ----CCCCCCcchhhHHHHhh-cCCcEEEEEcCCCChHhHHHhhhc-CCCceEEEEeecccc
Q 003325 267 ----MEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSLAVLEQLIFR-VPGCKTLVVSRFKFS 322 (829)
Q Consensus 267 ----~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~~~~~~l~~~-~~gs~iivTtR~~~~ 322 (829)
.+..+............ ...+-++++|.+...+.+..+... ..|..||+||.....
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 01111111111111111 357889999999988777666543 357889998886543
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.89 E-value=0.02 Score=57.23 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=36.8
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCC
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPN 249 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~ 249 (829)
..+-++|.++ ..-+++.|.|.+|+||||+|.+++. ..... ...++|++....+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~-g~~v~yi~~e~~~~ 60 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQ-GKKVAYIDTEGLSS 60 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhc-CCeEEEEECCCCCH
Confidence 3455555433 5578999999999999999999984 33222 33566887655544
No 255
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.083 Score=57.15 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=34.0
Q ss_pred ccccccch---hhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 183 LMGIGMAL---GKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 183 ~~~vgr~~---~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..+-|-++ ++++|+++|.+. .=++-|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34455555 556677777653 23577899999999999999999954
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.064 Score=54.07 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKL 284 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (829)
...+.++|.+|+|||+||.++++... ... ..++++++ .++...+-...... .. .....++.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~-~~g--~~v~~it~------~~l~~~l~~~~~~~-----~~---~~~~~l~~l~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL-LRG--KSVLIITV------ADIMSAMKDTFSNS-----ET---SEEQLLNDLS 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-hcC--CeEEEEEH------HHHHHHHHHHHhhc-----cc---cHHHHHHHhc
Confidence 45789999999999999999997422 222 24445543 34444433332100 00 1112233333
Q ss_pred CCcEEEEEcCCCCh--HhHHH-----hhh-c-CCCceEEEEeecc
Q 003325 285 GSRCLVVLDDVWSL--AVLEQ-----LIF-R-VPGCKTLVVSRFK 320 (829)
Q Consensus 285 ~~~~LlVlDdv~~~--~~~~~-----l~~-~-~~gs~iivTtR~~ 320 (829)
+.=+|||||+... ..|+. +.. . ...-.+||||.-.
T Consensus 162 -~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 162 -NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred -cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 3458899999743 33432 222 1 2245667776533
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.86 E-value=0.013 Score=61.25 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=38.8
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|. ++ ..-+++-|+|++|+||||||.+++.. .... ...++|++..+.++..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~-g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKA-GGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHc-CCcEEEEcccchhHHH
Confidence 34555554 33 56689999999999999999998742 3222 3456688877666553
No 258
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.81 E-value=0.041 Score=57.70 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
..+-+.++|+.|+|||.||.++++.. ....+. +.+++++ .+...+....... .....++.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~~--v~~~~~~------~l~~~lk~~~~~~----------~~~~~l~~l 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL-AKKGVS--STLLHFP------EFIRELKNSISDG----------SVKEKIDAV 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCC--EEEEEHH------HHHHHHHHHHhcC----------cHHHHHHHh
Confidence 45679999999999999999999743 233443 3466553 4444444433211 112222322
Q ss_pred cCCcEEEEEcCCCCh--HhHHH--hhh-----c-CCCceEEEEeecc
Q 003325 284 LGSRCLVVLDDVWSL--AVLEQ--LIF-----R-VPGCKTLVVSRFK 320 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~--~~~~~--l~~-----~-~~gs~iivTtR~~ 320 (829)
.+-=||||||+... ..|.. +.. . ..+-.+|+||--.
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34568999999732 33432 222 1 2456777877633
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.0005 Score=67.50 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=50.5
Q ss_pred CccccceeeecccccCCCCCCccccCCCceEEeeeccccccccccccccCCccccccccccccccccccCCccccCcCCC
Q 003325 615 NLTNLRSLWLEKVSISQLPKSSIPLKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHCDDLMKLPPSICGLQSL 694 (829)
Q Consensus 615 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~i~~l~~L 694 (829)
.+.+.+.|++-+|.++++. -...|+.|+.|.|+-|++.. +. .+..|++|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIss-----------------------------L~-pl~rCtrL 65 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISS-----------------------------LA-PLQRCTRL 65 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeecccccc-----------------------------ch-hHHHHHHH
Confidence 3556666777777666542 12345666666666555432 21 13444444
Q ss_pred cEEEeccccccccch--hhccCCCCCCEEecccCCcCCccccc-----ccCCCCCCEEe
Q 003325 695 KNLSVTNCHSLQELP--ADIGKMKSLQILRLYACPHLRTLPAR-----ICELVCLKYLN 746 (829)
Q Consensus 695 ~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~l~~L~~L~ 746 (829)
+.|+|..|. +..+. ..+.+|++|+.|.|..|+..+.-+.. +.-||+|+.||
T Consensus 66 kElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 66 KELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 444444433 22222 24456666666666665555444332 34455666554
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.78 E-value=0.016 Score=60.61 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|- ++ ..-+++-|+|++|+||||||.+++- ..... ...++|++..+.++..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~-g~~~vyId~E~~~~~~ 98 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKL-GGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCCEEEECccccHHHH
Confidence 34555554 23 5567999999999999999999884 33322 3456788887776653
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.028 Score=57.30 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
...-+.++|++|+|||.||.++.+.-. +..+ .+.++++. ++..++....... .....+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~--sv~f~~~~------el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI--SVLFITAP------DLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC--eEEEEEHH------HHHHHHHHHHhcC----------chHHHHHHH
Confidence 677889999999999999999997433 3334 45565543 5555554443221 011111111
Q ss_pred cCCcEEEEEcCCCC
Q 003325 284 LGSRCLVVLDDVWS 297 (829)
Q Consensus 284 ~~~~~LlVlDdv~~ 297 (829)
-.+-=||||||+-.
T Consensus 165 l~~~dlLIiDDlG~ 178 (254)
T COG1484 165 LKKVDLLIIDDIGY 178 (254)
T ss_pred hhcCCEEEEecccC
Confidence 12344899999974
No 262
>PRK09354 recA recombinase A; Provisional
Probab=95.77 E-value=0.016 Score=61.08 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHhh-cC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHH
Q 003325 193 NKVKEMVI-GR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVE 251 (829)
Q Consensus 193 ~~l~~~L~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~ 251 (829)
..+-.+|- ++ ..-+++-|+|++|+||||||.+++. ..... ...++|++....++..
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~-G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKA-GGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCcEEEECCccchHHH
Confidence 34555664 33 4567999999999999999999884 33333 3466799888777753
No 263
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.75 E-value=0.022 Score=60.31 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCCCCCHHHHHHHHHHhh
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (829)
..+-++|.++ ..-+++-|+|++|+|||+|+..++-..... +....+++|++....|.+.++.+. ++.+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i-a~~~ 184 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI-AERF 184 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH-HHHc
Confidence 3455566543 456788899999999999999886322221 222357789999999999887654 3443
No 264
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.00041 Score=79.02 Aligned_cols=11 Identities=18% Similarity=0.688 Sum_probs=7.7
Q ss_pred ccEeecccccc
Q 003325 766 LEKIDMRECSQ 776 (829)
Q Consensus 766 L~~L~l~~~~~ 776 (829)
|+.|+++.|..
T Consensus 403 l~~L~l~~~~~ 413 (482)
T KOG1947|consen 403 LRVLNLSDCRL 413 (482)
T ss_pred cceEecccCcc
Confidence 67777777763
No 265
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.70 E-value=0.014 Score=55.03 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred ccccccccccccccccCCccccCcCCCcEEEeccccccccchhhccCCCCCCEEecccCCcCCccc--ccccCCCCCCEE
Q 003325 668 PCLTELTFDHCDDLMKLPPSICGLQSLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLP--ARICELVCLKYL 745 (829)
Q Consensus 668 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L 745 (829)
.+...++|++|. +..++. +.+++.|.+|.+.+|+....-|.--.-+++|..|.+.+|+. ..+. ..+..+|+|++|
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 345556666653 333332 55666666666666553333332223345566666666432 2221 113445556666
Q ss_pred eccCCcCCCCCc----cccCCCccccEeeccc
Q 003325 746 NISQCVSLSCLP----QGIGNLIRLEKIDMRE 773 (829)
Q Consensus 746 ~l~~~~~l~~lp----~~l~~l~~L~~L~l~~ 773 (829)
.+-+|+.-. .+ -.+..+++|++||.++
T Consensus 119 tll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 555543211 11 0134455555555544
No 266
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.022 Score=65.78 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=83.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccC-----CeEEEEEeCCCCCHHHHHHHH
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN-----NRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-----~~~~wv~v~~~~~~~~l~~~i 257 (829)
..++||+.++.++++.|..+..- --.++|.+|||||++|.-++.. -+.+.-+ .+++-.+++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN-NPvLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN-NPVLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC-CCeEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEEEecHH------------
Confidence 35799999999999999854222 2246899999999998877741 2222222 122211111
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHhh-cCCcEEEEEcCCCCh-----------HhHHHhhhcCC-C--ceEEEEeecccc
Q 003325 258 WGFVSGCDSMEPNYVIPHWNLQIQSK-LGSRCLVVLDDVWSL-----------AVLEQLIFRVP-G--CKTLVVSRFKFS 322 (829)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~LlVlDdv~~~-----------~~~~~l~~~~~-g--s~iivTtR~~~~ 322 (829)
.-..+.. -..+-.+.++..++.. +.+++.|++|.++.. +.-.-++|... | -.|=.||-++--
T Consensus 236 -~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 236 -SLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred -HHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 1111111 0112223333333333 344899999998742 22233444432 3 344456655432
Q ss_pred -------c--cccceEEccCCCHHHHHHHHHHh
Q 003325 323 -------T--VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 323 -------~--~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
| ...+.+.++..+.+++..+++-.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 44578889999999999988644
No 267
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.58 E-value=0.076 Score=63.88 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=36.7
Q ss_pred cccccccchhhHHHHHHhhc--------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIG--------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~--------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|-+..++.+.+.+.. +....++.++|++|+|||.+|+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999998888742 12345789999999999999998874
No 268
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.54 E-value=0.0095 Score=53.79 Aligned_cols=21 Identities=57% Similarity=0.876 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhc
Q 003325 208 LGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~ 228 (829)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999953
No 269
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.53 E-value=0.25 Score=52.55 Aligned_cols=42 Identities=26% Similarity=0.133 Sum_probs=31.7
Q ss_pred cccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 186 IGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 186 vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|....+.++.+.+..- ..-..|.|+|..|+||+++|+.+++
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 56666666666666432 3455689999999999999999985
No 270
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.24 Score=53.03 Aligned_cols=145 Identities=9% Similarity=0.063 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcC
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLG 285 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 285 (829)
|--.++||+|.|||++..+++|.- .|+ |+=..++.-.+-.+ ++.++... .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd--IydLeLt~v~~n~d-Lr~LL~~t-----------------------~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD--IYDLELTEVKLDSD-LRHLLLAT-----------------------P 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc--eEEeeeccccCcHH-HHHHHHhC-----------------------C
Confidence 566799999999999999999631 233 43444444333333 33333321 2
Q ss_pred CcEEEEEcCCCChHh--------------------HHHhhh-------cCCCceEEEEeecc-c---cc-----cccceE
Q 003325 286 SRCLVVLDDVWSLAV--------------------LEQLIF-------RVPGCKTLVVSRFK-F---ST-----VLNDTY 329 (829)
Q Consensus 286 ~~~LlVlDdv~~~~~--------------------~~~l~~-------~~~gs~iivTtR~~-~---~~-----~~~~~~ 329 (829)
.+-+||+.|++-.-+ +.-|+. ...+-||||-|.+. . +| ..+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 344555555552100 000111 11134777655444 3 22 234567
Q ss_pred EccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH-HhcCC
Q 003325 330 EVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGA-SLREQ 386 (829)
Q Consensus 330 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~-~l~~~ 386 (829)
.+..-+.+....||.++...+. ++ .+..+|.+...|.-+.-..++. ++..+
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~---~h---~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE---DH---RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC---Cc---chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8888999999999999875433 11 2566666655555444444444 34444
No 271
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.51 E-value=0.01 Score=58.17 Aligned_cols=21 Identities=52% Similarity=0.849 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
||+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 272
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.49 E-value=0.14 Score=53.27 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVS 262 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~ 262 (829)
..-.++.|.|++|+||||++.+++.. ........++|++... ...++...+...+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 45568899999999999999998843 3222234677888765 44556666655443
No 273
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.1 Score=55.76 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=72.0
Q ss_pred cccchhhHHHHHHhhcCCCce-EEEEEcCCCCcHHHHHHHHhhcccccc-------------------ccCCeEEEEEeC
Q 003325 186 IGMALGKNKVKEMVIGRDDLS-VLGICGIGGSGKTTLALEVCRDHQVTS-------------------YFNNRILFLTVS 245 (829)
Q Consensus 186 vgr~~~~~~l~~~L~~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~~wv~v~ 245 (829)
+|-+....++..+........ .+.++|++|+||||+|.++.+.---.. ..+ .+..++-+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-d~lel~~s 82 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP-DFLELNPS 82 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC-ceEEeccc
Confidence 455555666777766444444 599999999999999999985311111 011 22344444
Q ss_pred CCCC---HHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---c-CCCceEEEE
Q 003325 246 QSPN---VEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---R-VPGCKTLVV 316 (829)
Q Consensus 246 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~-~~gs~iivT 316 (829)
.... ..+..+++........ ..++.-++++|+++.. +.-..+.. . .+.+.+|++
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 4433 2333344433332111 0366789999999954 33333333 2 336777777
Q ss_pred eeccc-cc----cccceEEccC
Q 003325 317 SRFKF-ST----VLNDTYEVEL 333 (829)
Q Consensus 317 tR~~~-~~----~~~~~~~l~~ 333 (829)
|.... +. .....+++.+
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred cCChhhccchhhhcceeeecCC
Confidence 77433 22 3334556655
No 274
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.48 E-value=0.037 Score=58.32 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=42.5
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccccccc---CCeEEEEEeCCCCCHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF---NNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~~wv~v~~~~~~~~l~ 254 (829)
..+-++|.++ ..-.++.|+|.+|+||||||..++......... ...++|++....+...++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~ 148 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL 148 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence 4566666543 567899999999999999999887421221111 1356799988877877643
No 275
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.46 E-value=0.091 Score=63.43 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=35.7
Q ss_pred cccccccchhhHHHHHHhhcC--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIGR--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|-+..++.+.+.+... .....+.++|+.|+|||+||+.+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 356789888888888877421 2245677999999999999999984
No 276
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.45 E-value=0.35 Score=51.48 Aligned_cols=44 Identities=25% Similarity=0.073 Sum_probs=35.3
Q ss_pred cccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|....+.++.+.+..- ..-..|.|.|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4688888888888877532 3455788999999999999999984
No 277
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.43 E-value=0.26 Score=56.69 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=37.4
Q ss_pred cccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|....+.++.+.+..- .....|.|+|..|+|||++|+.+++
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY 241 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence 346799999999888887532 3455678999999999999999996
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.39 E-value=0.087 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..-.+++|+|+.|.|||||++.++.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999853
No 279
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.36 E-value=0.054 Score=53.13 Aligned_cols=107 Identities=9% Similarity=0.095 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHH-HHhhc
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQ-IQSKL 284 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 284 (829)
.+|.|.|+.|.||||++..+.. ........++ + .+.++... ..... ..+......+ .....+... ...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i-~-t~e~~~E~--~~~~~-~~~i~q~~vg--~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHI-L-TIEDPIEF--VHESK-RSLINQREVG--LDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEE-E-EEcCCccc--cccCc-cceeeecccC--CCccCHHHHHHHHhc
Confidence 4789999999999999998874 2333333344 2 23322211 00000 0000000000 011122222 22344
Q ss_pred CCcEEEEEcCCCChHhHHHhhh-cCCCceEEEEeeccc
Q 003325 285 GSRCLVVLDDVWSLAVLEQLIF-RVPGCKTLVVSRFKF 321 (829)
Q Consensus 285 ~~~~LlVlDdv~~~~~~~~l~~-~~~gs~iivTtR~~~ 321 (829)
...=.+++|++.+.+.+..... ...|..++.|+....
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~ 110 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNS 110 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 5567999999998876655433 345666666665544
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.32 E-value=0.05 Score=53.20 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
+-+++.|.|++|.||||+.+.+....... ...++++ .....-...+.+. .+.. ...+...+...
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~-apT~~Aa~~L~~~----~~~~--------a~Ti~~~l~~~ 80 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGL-APTNKAAKELREK----TGIE--------AQTIHSFLYRI 80 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEE-ESSHHHHHHHHHH----HTS---------EEEHHHHTTEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEE-CCcHHHHHHHHHh----hCcc--------hhhHHHHHhcC
Confidence 45788899999999999999987432222 1244333 3222222222222 1100 00000000000
Q ss_pred ----------cCCcEEEEEcCCC--ChHhHHHhhhcC--CCceEEEEeecc
Q 003325 284 ----------LGSRCLVVLDDVW--SLAVLEQLIFRV--PGCKTLVVSRFK 320 (829)
Q Consensus 284 ----------~~~~~LlVlDdv~--~~~~~~~l~~~~--~gs~iivTtR~~ 320 (829)
..++-+||+|++. +..++..+.... .|+|+|+.--..
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 1234599999998 445677766543 378887765444
No 281
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.32 E-value=0.013 Score=46.19 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999953
No 282
>PTZ00035 Rad51 protein; Provisional
Probab=95.31 E-value=0.06 Score=57.28 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=43.3
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhcccc---ccccCCeEEEEEeCCCCCHHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQV---TSYFNNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~~~~~wv~v~~~~~~~~l~~ 255 (829)
..+-++|.++ ..-.++.|+|++|+|||||+..++-.... .+.-...++|++....+...++..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 4556666543 56789999999999999999988732221 111234677999888788777543
No 283
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.2 Score=55.25 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH-h
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ-S 282 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~ 282 (829)
...-|.+||++|.|||-||++|+|. ..-. |++|..+ +++..-. + +.........+ .
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~N------FisVKGP----ELlNkYV----G-------ESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGAN------FISVKGP----ELLNKYV----G-------ESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCc------eEeecCH----HHHHHHh----h-------hHHHHHHHHHHHh
Confidence 4567889999999999999999973 3333 4555433 1111110 0 01112222222 2
Q ss_pred hcCCcEEEEEcCCCCh-------------HhHHHhhhcC------CCceEEEEeeccc-cc-------cccceEEccCCC
Q 003325 283 KLGSRCLVVLDDVWSL-------------AVLEQLIFRV------PGCKTLVVSRFKF-ST-------VLNDTYEVELLR 335 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~-------------~~~~~l~~~~------~gs~iivTtR~~~-~~-------~~~~~~~l~~L~ 335 (829)
...-+|.|++|.++.. ....++.... .|--||-.|.-.. +. ..+...-|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3567999999999842 1234444322 2444554443333 22 234677788888
Q ss_pred HHHHHHHHHHhhc
Q 003325 336 EDESLSLFCYSAF 348 (829)
Q Consensus 336 ~~e~~~Lf~~~a~ 348 (829)
.+|-..+++...-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999988764
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.29 E-value=0.08 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|.|+.|.|||||++.++.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999985
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.041 Score=61.54 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC--CCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS--PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (829)
...-|.|.|+.|+|||+||+++++... +.+. +.+-+++.+.- ...+.+++.+-..+ .+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~-~hv~~v~Cs~l~~~~~e~iQk~l~~vf------------------se 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLI-AHVEIVSCSTLDGSSLEKIQKFLNNVF------------------SE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccc-eEEEEEechhccchhHHHHHHHHHHHH------------------HH
Confidence 345688999999999999999996433 3332 23334444432 22333333332221 12
Q ss_pred hhcCCcEEEEEcCCC
Q 003325 282 SKLGSRCLVVLDDVW 296 (829)
Q Consensus 282 ~~~~~~~LlVlDdv~ 296 (829)
.+...+-++||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 335678899999997
No 286
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.27 E-value=0.21 Score=49.21 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=86.9
Q ss_pred cccccccchhhHH---HHHHhhcC-----CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHH
Q 003325 182 NLMGIGMALGKNK---VKEMVIGR-----DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 182 ~~~~vgr~~~~~~---l~~~L~~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l 253 (829)
-..+||.++.+.+ |++.|... =.++-|..+|++|.|||-+|+++.|...+ .| +.+...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~----l~vkat-------- 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL----LLVKAT-------- 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce----EEechH--------
Confidence 3456887766554 33344332 24688999999999999999999974322 22 122211
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHH-hhcCCcEEEEEcCCCCh--------------HhHHHhhhcC------CCce
Q 003325 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQ-SKLGSRCLVVLDDVWSL--------------AVLEQLIFRV------PGCK 312 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~LlVlDdv~~~--------------~~~~~l~~~~------~gs~ 312 (829)
+++..- ..+...++....+ ..+.-+|.+++|.++.. +...++.... .|-.
T Consensus 186 --~liGeh-------VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 --ELIGEH-------VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHHH-------hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111110 0011122222222 12567899999998742 2234444322 2444
Q ss_pred EEEEeeccccc------cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCc
Q 003325 313 TLVVSRFKFST------VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGL 372 (829)
Q Consensus 313 iivTtR~~~~~------~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 372 (829)
.|-.|...... .-...++...-+++|-..++..++-.-. -+.+.-.+.++++.+|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCC
Confidence 44444433322 2234566667788888888888872211 11122355666666664
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.26 E-value=0.015 Score=64.51 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHhhc-----CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIG-----RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|.++.++++++.|.. ...-+++.++||+|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 578999999999999832 24567999999999999999999994
No 288
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.24 E-value=0.016 Score=57.37 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999985
No 289
>PTZ00301 uridine kinase; Provisional
Probab=95.21 E-value=0.016 Score=57.04 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998873
No 290
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=0.37 Score=51.06 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCCh--HhHHHhh---hc-CCCceEEEEeeccc-cc----cccceEEccCCCHHHHHHHHHHh
Q 003325 286 SRCLVVLDDVWSL--AVLEQLI---FR-VPGCKTLVVSRFKF-ST----VLNDTYEVELLREDESLSLFCYS 346 (829)
Q Consensus 286 ~~~LlVlDdv~~~--~~~~~l~---~~-~~gs~iivTtR~~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~ 346 (829)
++=++|+|+++.. +....+. .. .++..+|++|.+.. +. .....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344456888743 2222222 22 23566777777654 22 34578899999999998887653
No 291
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.19 E-value=0.2 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.++|++|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998874
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.089 Score=53.74 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=42.6
Q ss_pred HHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHH
Q 003325 195 VKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRA 255 (829)
Q Consensus 195 l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~ 255 (829)
+.++|-++ ..-+++=|+|+.|.||||+|.+++- .++..-. .+.|++..+.+++..+..
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~-~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGG-KAAFIDTEHALDPERAKQ 107 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCC-eEEEEeCCCCCCHHHHHH
Confidence 44445432 4567889999999999999999883 3333333 566999999999887654
No 293
>PRK07667 uridine kinase; Provisional
Probab=95.19 E-value=0.026 Score=55.16 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=27.2
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.+.+.+..- ....+|+|-|.+|+||||+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555555432 4457999999999999999999984
No 294
>PRK08233 hypothetical protein; Provisional
Probab=95.18 E-value=0.016 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|.|++|+||||||+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999984
No 295
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.18 E-value=0.017 Score=57.38 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|.|++|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999995
No 296
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.18 E-value=0.038 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-..+.|+|+.|.||||+++.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999884
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.15 E-value=0.016 Score=53.49 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999984
No 298
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.28 Score=51.26 Aligned_cols=44 Identities=32% Similarity=0.298 Sum_probs=32.4
Q ss_pred cccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.|.++.++-|.+...- ...-+-|..+|++|.|||-||++|+.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 456766666655555421 13457899999999999999999995
No 299
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.12 E-value=0.027 Score=56.75 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=26.4
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+..+........+|+|.|++|.|||||++.+..
T Consensus 23 ~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 23 LAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333444446788999999999999999999984
No 300
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.29 Score=49.12 Aligned_cols=45 Identities=31% Similarity=0.296 Sum_probs=36.1
Q ss_pred ccccccchhhHHHHHHhhc-----------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIG-----------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+-|.+..++.+.+...- +..-+-|.++|++|.||+-||++|+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 4567888888888876532 13468899999999999999999995
No 301
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.023 Score=54.69 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeE
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRI 239 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 239 (829)
...+|.+.|+.|+||||+|+.+++ .....+...+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~ 39 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVI 39 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEE
Confidence 456999999999999999999994 4555555433
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.17 Score=48.39 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.-.+++|+|+.|.|||||.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4567999999999999999999984
No 303
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.97 E-value=0.066 Score=56.83 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 204 DLSVLGICGIGGSGKT-TLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKT-tLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
.-++|.++||.||||| |||+..+.-....++. ++..++....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~--kVaiITtDtY 244 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK--KVAIITTDTY 244 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc--ceEEEEeccc
Confidence 3799999999999996 5666655311123333 4556766544
No 304
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.94 E-value=0.096 Score=54.46 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccc-cccCCeEEEEEeCC
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVT-SYFNNRILFLTVSQ 246 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~~wv~v~~ 246 (829)
..++++++|++|+||||++..++.....+ +.+ .+..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~--~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK--KVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC--eEEEEECCc
Confidence 45799999999999999999988532222 223 454666543
No 305
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.94 E-value=0.057 Score=57.30 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccc---cccCCeEEEEEeCCCCCHHHHHHHHHHhh
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVT---SYFNNRILFLTVSQSPNVEQLRAKVWGFV 261 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~~wv~v~~~~~~~~l~~~i~~~l 261 (829)
..+-++|.++ ..-.++-|.|.+|+|||+||..++-..... +.-...++|++....+.++++.+ +++.+
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~ 181 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERF 181 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHc
Confidence 4556666543 557888999999999999999887422221 11223678999999999888754 34443
No 306
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.022 Score=55.28 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.+.+|+|.|.+|+||||+|+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3467999999999999999999994
No 307
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.095 Score=56.07 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccC-CeEEEEEeCCC-CCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN-NRILFLTVSQS-PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ 281 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 281 (829)
.-.++.++|+.|+||||++.++... ....+. .++..++.... ....+-++...+.++... ........+...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~--~~~~~~~~l~~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV--HAVKDGGDLQLALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce--EecCCcccHHHHHH
Confidence 4579999999999999999999853 222222 24545554332 122223333333332211 11111112233334
Q ss_pred hhcCCcEEEEEcCCC
Q 003325 282 SKLGSRCLVVLDDVW 296 (829)
Q Consensus 282 ~~~~~~~LlVlDdv~ 296 (829)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 44444 556689875
No 308
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.90 E-value=0.94 Score=51.60 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=38.1
Q ss_pred cccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|....+.++.+.+..- ..-..|.|.|..|+|||++|+.+++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~ 232 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHA 232 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 345799999998888887542 4556788999999999999999995
No 309
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.88 E-value=0.082 Score=56.05 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCeEEEEEeCCCCCHHHHHHH
Q 003325 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
.+.++|.++ ..-+++-|+|++|+||||+|.+++-....... -...++|++....+...++.+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 344555433 45688999999999999999999843222111 1236779999988888776543
No 310
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.86 E-value=0.17 Score=49.25 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=64.4
Q ss_pred cccccchhhHHHHHHh---hcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHh
Q 003325 184 MGIGMALGKNKVKEMV---IGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGF 260 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~ 260 (829)
.++|.+..++.+++-- ..+....-|.+||.-|.||+.|++++.+ .+.+... + .|.|.+. + ..-+-.|+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~gl-r--LVEV~k~-d-l~~Lp~l~~~ 133 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGL-R--LVEVDKE-D-LATLPDLVEL 133 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCC-e--EEEEcHH-H-HhhHHHHHHH
Confidence 3466666666655432 3345667789999999999999999995 4444443 2 4544421 1 1111222222
Q ss_pred hcCCCCCCCCCCcchhhHHHHhhcCCcEEEEEcCCCC---hHhHHHhhhcC-------CCceEEEEeeccc
Q 003325 261 VSGCDSMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWS---LAVLEQLIFRV-------PGCKTLVVSRFKF 321 (829)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~---~~~~~~l~~~~-------~gs~iivTtR~~~ 321 (829)
+. ...+||.|+.||..- .+..+.++... |...++..|.++.
T Consensus 134 Lr--------------------~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 134 LR--------------------ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hh--------------------cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 21 147899999999872 23455555433 3345555555543
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.86 E-value=0.088 Score=56.72 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
.++-++|.++ ..-.++.|.|.+|+|||||+.+++.. .... ...++|++...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~-g~~VlYvs~EE 120 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKR-GGKVLYVSGEE 120 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhc-CCeEEEEECCc
Confidence 4555666433 45679999999999999999999843 2222 23566777654
No 312
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.56 Score=45.88 Aligned_cols=45 Identities=29% Similarity=0.258 Sum_probs=34.6
Q ss_pred cccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.+-|.+..+.++.+..-- -+..+-|.++|++|.|||-||++|+|+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345667677777766421 167888999999999999999999964
No 313
>PRK06762 hypothetical protein; Provisional
Probab=94.82 E-value=0.023 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 314
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.77 E-value=0.43 Score=56.68 Aligned_cols=45 Identities=24% Similarity=0.111 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|+...+.++.+.+..- ..-..|.|.|..|+|||++|+.+++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~ 421 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 421 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 35799998888887776532 4456789999999999999999986
No 315
>PRK06547 hypothetical protein; Provisional
Probab=94.77 E-value=0.027 Score=53.58 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=23.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 202 RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 202 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.....+|+|.|++|+||||+|+.+...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 357789999999999999999999853
No 316
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.77 E-value=0.023 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 317
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.047 Score=52.32 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..+|+|-||=|+||||||+.+.++ .. | .++.-.+.+.+=.+....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~--l~--~--~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH--LG--F--KVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH--hC--C--ceeeecccCChHHHHHHHhH
Confidence 468999999999999999999953 22 3 33455566554444444443
No 318
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.73 E-value=0.36 Score=44.90 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC---CCCHHHHHHHHHHhhc----CCC-CCCCCCCcch--
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ---SPNVEQLRAKVWGFVS----GCD-SMEPNYVIPH-- 275 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~---~~~~~~l~~~i~~~l~----~~~-~~~~~~~~~~-- 275 (829)
..|-|++..|.||||+|...+- +..++ ..++.++-.-+ ..+....++.+ ..+. +.. .....+..+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGH-GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHC-CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 4677888889999999988873 33322 22344443322 23333443333 1110 000 0000111111
Q ss_pred -----hhHHHHhh-cCCcEEEEEcCCCCh--------HhHHHhh-hcCCCceEEEEeeccccc
Q 003325 276 -----WNLQIQSK-LGSRCLVVLDDVWSL--------AVLEQLI-FRVPGCKTLVVSRFKFST 323 (829)
Q Consensus 276 -----~~~~~~~~-~~~~~LlVlDdv~~~--------~~~~~l~-~~~~gs~iivTtR~~~~~ 323 (829)
+....+.+ .++-=|||||++-.. +++-.+. ...++.-||+|.|.....
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~ 141 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKE 141 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 11122222 456679999998632 3343443 345578999999998743
No 319
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.72 E-value=0.16 Score=59.36 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-h
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-K 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~ 283 (829)
.+-|.++|++|.||||+|+.+++. ....| +.++.+. +.. ...+. ....+...... .
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~--~~~~f----~~is~~~------~~~----~~~g~-------~~~~~~~~f~~a~ 241 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGE--AKVPF----FTISGSD------FVE----MFVGV-------GASRVRDMFEQAK 241 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--cCCCE----EEEehHH------hHH----hhhcc-------cHHHHHHHHHHHH
Confidence 345999999999999999999853 22222 1232221 110 00000 01111111111 2
Q ss_pred cCCcEEEEEcCCCChH----------------hHHHhhh---cC---CCceEEEEeeccccc--------cccceEEccC
Q 003325 284 LGSRCLVVLDDVWSLA----------------VLEQLIF---RV---PGCKTLVVSRFKFST--------VLNDTYEVEL 333 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~~----------------~~~~l~~---~~---~gs~iivTtR~~~~~--------~~~~~~~l~~ 333 (829)
...+++|++|+++... .+..+.. ++ .+.-||.||...... .....+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 4567899999987531 1222221 11 133444455544321 1246788888
Q ss_pred CCHHHHHHHHHHhhcC
Q 003325 334 LREDESLSLFCYSAFG 349 (829)
Q Consensus 334 L~~~e~~~Lf~~~a~~ 349 (829)
.+.++-.+++..+.-+
T Consensus 322 Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 322 PDVRGREQILKVHMRR 337 (644)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 8988888888877633
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.70 E-value=0.15 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..-.+++|+|+.|.|||||++.++.-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35578999999999999999999853
No 321
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.66 E-value=0.037 Score=56.97 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCC
Q 003325 193 NKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYV 272 (829)
Q Consensus 193 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 272 (829)
..+++.+.. .-+-+.++|+.|+|||++++....... ...| .+.-++.+...+...+++.+-..+....
T Consensus 23 ~~ll~~l~~--~~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~--~~~~~~~s~~Tts~~~q~~ie~~l~k~~------- 90 (272)
T PF12775_consen 23 SYLLDLLLS--NGRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY--LVITINFSAQTTSNQLQKIIESKLEKRR------- 90 (272)
T ss_dssp HHHHHHHHH--CTEEEEEESSTTSSHHHHHHHHHHCST-TCCE--EEEEEES-TTHHHHHHHHCCCTTECECT-------
T ss_pred HHHHHHHHH--cCCcEEEECCCCCchhHHHHhhhccCC-cccc--ceeEeeccCCCCHHHHHHHHhhcEEcCC-------
Confidence 345565553 456779999999999999999885311 1122 1223445544333333321111110000
Q ss_pred cchhhHHHHhhcCCcEEEEEcCCCC
Q 003325 273 IPHWNLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 273 ~~~~~~~~~~~~~~~~LlVlDdv~~ 297 (829)
.....-..+|+.++++||+.-
T Consensus 91 ----~~~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 91 ----GRVYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----TEEEEEESSSEEEEEEETTT-
T ss_pred ----CCCCCCCCCcEEEEEecccCC
Confidence 000011257899999999973
No 322
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.65 E-value=0.16 Score=52.69 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc-ccccccCCeEEE---EEeCCC----CC-HHHH----
Q 003325 187 GMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH-QVTSYFNNRILF---LTVSQS----PN-VEQL---- 253 (829)
Q Consensus 187 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~~w---v~v~~~----~~-~~~l---- 253 (829)
+|..+..--.++|+ ++++..|.+.|.+|.|||.||.+..-.. ..++.|...+.. +.+++. +. .++-
T Consensus 228 prn~eQ~~ALdlLl-d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 228 PRNAEQRVALDLLL-DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred cccHHHHHHHHHhc-CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 35544444455565 5799999999999999999997664322 234455432211 112221 11 1110
Q ss_pred ---HHHHHHhhcCCCCCCCCCCcchhhHH----------HHhhcC---CcEEEEEcCCCCh--HhHHHhhh-cCCCceEE
Q 003325 254 ---RAKVWGFVSGCDSMEPNYVIPHWNLQ----------IQSKLG---SRCLVVLDDVWSL--AVLEQLIF-RVPGCKTL 314 (829)
Q Consensus 254 ---~~~i~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~LlVlDdv~~~--~~~~~l~~-~~~gs~ii 314 (829)
.-+=++.+....... ...+... +...+| .+-++|+|...+. .+...+.. .++||||+
T Consensus 307 mq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIV 382 (436)
T COG1875 307 MQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIV 382 (436)
T ss_pred HHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEE
Confidence 111122222222111 1111111 111233 3568999999965 56666654 68899999
Q ss_pred EEeeccc
Q 003325 315 VVSRFKF 321 (829)
Q Consensus 315 vTtR~~~ 321 (829)
.|.-...
T Consensus 383 l~gd~aQ 389 (436)
T COG1875 383 LTGDPAQ 389 (436)
T ss_pred EcCCHHH
Confidence 8865443
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=94.65 E-value=0.12 Score=56.73 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|.++|++|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998887774
No 324
>PRK03839 putative kinase; Provisional
Probab=94.65 E-value=0.025 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999953
No 325
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.65 E-value=0.016 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhccccccccC
Q 003325 208 LGICGIGGSGKTTLALEVCRDHQVTSYFN 236 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 236 (829)
|.++|.+|+||||+|+.++ ..+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA--~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALA--RSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHH--HHTT--EE
T ss_pred EeeECCCccHHHHHHHHHH--HHcCCcee
Confidence 6799999999999999999 45666774
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.64 E-value=0.057 Score=55.34 Aligned_cols=26 Identities=38% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 202 RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 202 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+..+|.|.|.+|+|||||...+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999995
No 327
>PRK06217 hypothetical protein; Validated
Probab=94.63 E-value=0.06 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999964
No 328
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.62 E-value=0.24 Score=47.78 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEE
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILF 241 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~w 241 (829)
..-.+++|+|+.|.|||||.+.++.- .....+.+.|
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~ 58 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILL 58 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 35679999999999999999999952 2234445533
No 329
>PHA00729 NTP-binding motif containing protein
Probab=94.61 E-value=0.044 Score=53.93 Aligned_cols=24 Identities=50% Similarity=0.585 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+...|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999985
No 330
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.59 E-value=0.1 Score=55.51 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=44.9
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccc---cCCeEEEEEeCCCCCHHHHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSY---FNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..+.++|.++ ..-.++-|+|++|+|||++|.+++-....... -...++|++....++..++.+.+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 3455555433 45788999999999999999999843222111 12367799999888888776543
No 331
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.58 E-value=0.0071 Score=68.82 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=78.0
Q ss_pred cCCCceEEeeeccccccccccccccCCccccccccccccc-cccccCC----ccccCcCCCcEEEeccccccccch-hhc
Q 003325 639 LKKMQKISFVLCKINNSLDQSVVDLPKTLPCLTELTFDHC-DDLMKLP----PSICGLQSLKNLSVTNCHSLQELP-ADI 712 (829)
Q Consensus 639 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~lp----~~i~~l~~L~~L~l~~~~~~~~lp-~~l 712 (829)
+++|+.|.+..|....... .......+++|+.|++++| ......+ .....+++|+.|+++.|..+...- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 6788888887775443211 1222345788999998873 2222222 233456888888888887544322 223
Q ss_pred c-CCCCCCEEecccCCcCC--cccccccCCCCCCEEeccCCcCCCC--CccccCCCccccEeeccc
Q 003325 713 G-KMKSLQILRLYACPHLR--TLPARICELVCLKYLNISQCVSLSC--LPQGIGNLIRLEKIDMRE 773 (829)
Q Consensus 713 ~-~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~l~~ 773 (829)
. .+++|+.|.+.+|..+. .+-.....+++|++|++++|..+.. +.....++++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2 37888888888777532 2233345678899999888876532 222233455555544333
No 332
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.12 Score=55.87 Aligned_cols=89 Identities=16% Similarity=0.072 Sum_probs=46.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhcccccc-ccCCeEEEEEeCCCCCHHHH--HHHHHHhhcCCCCCCCCCCcchhhHHH
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTS-YFNNRILFLTVSQSPNVEQL--RAKVWGFVSGCDSMEPNYVIPHWNLQI 280 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~~wv~v~~~~~~~~l--~~~i~~~l~~~~~~~~~~~~~~~~~~~ 280 (829)
..++|.++|+.|+||||.+..++....... +-...+..++.... ..... ++.....++... ........+...+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~-R~aa~eQL~~~a~~lgvpv--~~~~~~~~l~~~L 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY-RIGAKKQIQTYGDIMGIPV--KAIESFKDLKEEI 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc-cHHHHHHHHHHhhcCCcce--EeeCcHHHHHHHH
Confidence 467999999999999999998885333221 12235545655532 22221 233333332211 1111222233333
Q ss_pred HhhcCCcEEEEEcCCC
Q 003325 281 QSKLGSRCLVVLDDVW 296 (829)
Q Consensus 281 ~~~~~~~~LlVlDdv~ 296 (829)
... .+.-+|++|.+.
T Consensus 250 ~~~-~~~DlVLIDTaG 264 (388)
T PRK12723 250 TQS-KDFDLVLVDTIG 264 (388)
T ss_pred HHh-CCCCEEEEcCCC
Confidence 333 445688888875
No 333
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.51 E-value=2.5 Score=45.45 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVS 262 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~ 262 (829)
..+.||-.+|.-|.||||-|..+++ ..+. ...++..|+.... +...+-++.+..+..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 4578999999999999999998884 3333 3445544544322 122233445555543
No 334
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.45 E-value=0.024 Score=49.26 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|-|+|++|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999884
No 335
>PRK04040 adenylate kinase; Provisional
Probab=94.44 E-value=0.032 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 336
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.43 E-value=0.025 Score=55.56 Aligned_cols=21 Identities=52% Similarity=0.801 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.38 E-value=0.025 Score=56.36 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|++|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 338
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.36 E-value=0.07 Score=53.32 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999984
No 339
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.34 E-value=0.032 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003325 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.+++|+|++|+||||||+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.31 E-value=0.092 Score=50.25 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++.+.|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999884
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.25 E-value=0.14 Score=56.20 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.++|.+|+||||+|..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999999985
No 342
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.25 E-value=0.03 Score=53.90 Aligned_cols=21 Identities=52% Similarity=0.749 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999995
No 343
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.12 Score=54.65 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCC
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
.++...|-++ -.-.+|.|-|-+|||||||..+++. +....- ++++|+-.+......+. +..++.....-...
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~--~vLYVsGEES~~QiklR---A~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG--KVLYVSGEESLQQIKLR---ADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC--cEEEEeCCcCHHHHHHH---HHHhCCCccceEEe
Confidence 4455555332 3457999999999999999999995 344333 56566554433322222 22332111000001
Q ss_pred CcchhhHHHHhh-cCCcEEEEEcCCCC
Q 003325 272 VIPHWNLQIQSK-LGSRCLVVLDDVWS 297 (829)
Q Consensus 272 ~~~~~~~~~~~~-~~~~~LlVlDdv~~ 297 (829)
....++.+.+.+ ..+.-++|+|.+..
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 111223344444 57889999999874
No 344
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.23 E-value=0.71 Score=54.41 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=35.1
Q ss_pred ccccccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|....+.++.+.+..- ..-..|.|+|..|+||+++|+.+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 45788888888877776532 3344578999999999999999986
No 345
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.23 E-value=0.089 Score=53.41 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=40.7
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcccc--ccccCCeEEEEEeCCC-CCHHHHHHHHHHh
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQV--TSYFNNRILFLTVSQS-PNVEQLRAKVWGF 260 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~ 260 (829)
++.|..-..-+-++|.|.+|+|||+|+..+.++..+ +++-+ .++++-+++. .++.++.+++...
T Consensus 60 ID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~-v~V~~~IGeR~rev~e~~~~~~~~ 126 (276)
T cd01135 60 IDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENF-AVVFAAMGITMEDARFFKDDFEET 126 (276)
T ss_pred eecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCC-EEEEEEeccccHHHHHHHHHhhhc
Confidence 333433345567899999999999999998865331 11223 4457777664 4566666666543
No 346
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.22 E-value=0.093 Score=58.19 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCC-CHHHHHHHHHHhhcCCCCCCCCCC
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSP-NVEQLRAKVWGFVSGCDSMEPNYV 272 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~ 272 (829)
++++++..-..-.-..|+|++|+|||||++.+++. ....+-+..++.+-|.+.+ .+.++.+.+-..+..... ....
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~-i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~--D~p~ 481 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANA-ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF--DRPP 481 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHH-HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC--CCCH
Confidence 45666654456678899999999999999999962 2222323344344455433 333333322111111110 0011
Q ss_pred cchh------hHHHHhh--cCCcEEEEEcCCCCh
Q 003325 273 IPHW------NLQIQSK--LGSRCLVVLDDVWSL 298 (829)
Q Consensus 273 ~~~~------~~~~~~~--~~~~~LlVlDdv~~~ 298 (829)
..+. ...-+.+ .++.+||++|++-..
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 1111 1111222 789999999998643
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.19 E-value=0.063 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.-.+|.+.|.-|.||||+++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999964
No 348
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.19 E-value=2.8 Score=42.10 Aligned_cols=196 Identities=18% Similarity=0.173 Sum_probs=108.6
Q ss_pred ccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc------ccccccCCeEEEEE----------eCCC-
Q 003325 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH------QVTSYFNNRILFLT----------VSQS- 247 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~~~~~F~~~~~wv~----------v~~~- 247 (829)
+.++++....++.+.. .++..-..++|++|.||-|.+..+.+.- +++- +.+. |.+ ++..
T Consensus 15 l~~~~e~~~~Lksl~~-~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki--~~~t-~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS-TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI--ETRT-FTTPSKKKLEISTVSSNY 90 (351)
T ss_pred cccHHHHHHHHHHhcc-cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee--eeEE-EecCCCceEEEEEecccc
Confidence 3455555555555554 4677888999999999999888776531 1111 1111 222 1111
Q ss_pred ----------CCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhhcCCcE-EEEEcCCCCh--HhHHHhhh----cCCC
Q 003325 248 ----------PNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSKLGSRC-LVVLDDVWSL--AVLEQLIF----RVPG 310 (829)
Q Consensus 248 ----------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-LlVlDdv~~~--~~~~~l~~----~~~g 310 (829)
...+.+.++++++.......+.. ..+.| ++|+-.+++. +.-.++.. ....
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~-------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ-------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhc-------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 12234555666665433221111 12233 4556666643 22223322 3456
Q ss_pred ceEEEEeeccc--cc---cccceEEccCCCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhc-
Q 003325 311 CKTLVVSRFKF--ST---VLNDTYEVELLREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLR- 384 (829)
Q Consensus 311 s~iivTtR~~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~- 384 (829)
+|+|+...+-. +. ...-.++++..+++|-...++..+-++.-.-+ .+++.+|+++++|.---+-.+-...+
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 78777544332 22 33446789999999999999888754443222 56999999999997543322222221
Q ss_pred -C-----C----ChhHHHHHHHHhcc
Q 003325 385 -E-----Q----PEMYWTSAKKRLSK 400 (829)
Q Consensus 385 -~-----~----~~~~w~~~l~~l~~ 400 (829)
+ + +..+|+-+..+...
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHH
Confidence 1 1 24679988877543
No 349
>PRK00625 shikimate kinase; Provisional
Probab=94.18 E-value=0.033 Score=53.03 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|.++||+|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 350
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.48 Score=46.53 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHhhcC------------CCceEEEEEcCCCCcHHHHHHHHhhcccccccc
Q 003325 184 MGIGMALGKNKVKEMVIGR------------DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF 235 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 235 (829)
.+-|.+..++++++.+.-+ ..++-+..+|++|.|||-+|++.+ .....-|
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcA--aqT~aTF 233 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACA--AQTNATF 233 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHH--HhccchH
Confidence 4557777788888876321 456788999999999999999988 3444444
No 351
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.16 E-value=0.073 Score=49.47 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=29.1
Q ss_pred hhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 190 LGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 190 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++++.+.+. + ++++++|..|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~---~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 34577788785 3 89999999999999999999953
No 352
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.15 E-value=0.037 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|+|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999995
No 353
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.14 E-value=0.044 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|++|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999995
No 354
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.9 Score=51.38 Aligned_cols=120 Identities=22% Similarity=0.276 Sum_probs=68.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHh-h
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQS-K 283 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~ 283 (829)
..-|.++|++|.|||-||.++... +. .-+++|.++ +++..-.+. ..+.......+ .
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~------~~--~~fisvKGP--------ElL~KyIGa-------SEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASN------SN--LRFISVKGP--------ELLSKYIGA-------SEQNVRDLFERAQ 757 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhh------CC--eeEEEecCH--------HHHHHHhcc-------cHHHHHHHHHHhh
Confidence 346889999999999999999842 22 226777644 122221111 11222233322 2
Q ss_pred cCCcEEEEEcCCCCh-------------HhHHHhhh------cCCCceEE-EEeeccccc-------cccceEEccCCCH
Q 003325 284 LGSRCLVVLDDVWSL-------------AVLEQLIF------RVPGCKTL-VVSRFKFST-------VLNDTYEVELLRE 336 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~-------------~~~~~l~~------~~~gs~ii-vTtR~~~~~-------~~~~~~~l~~L~~ 336 (829)
..++|.|++|..++. ....++.. +..|--|+ -|||...+. ..++.+.-+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 678999999999853 23444443 23355555 366665432 1223334444566
Q ss_pred HHHHHHHHHhh
Q 003325 337 DESLSLFCYSA 347 (829)
Q Consensus 337 ~e~~~Lf~~~a 347 (829)
.|-+++|...+
T Consensus 838 ~eRl~il~~ls 848 (952)
T KOG0735|consen 838 PERLEILQVLS 848 (952)
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 355
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.13 E-value=0.047 Score=56.93 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHH
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQ 252 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~ 252 (829)
..-+++-|+|+.|+||||||..++. ..+.. +..++|++..+.++...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~-g~~~a~ID~e~~ld~~~ 97 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQ-GGICAFIDAEHALDPEY 97 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHT-T-EEEEEESSS---HHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcc-cceeEEecCcccchhhH
Confidence 3467999999999999999999984 33333 45677999988877644
No 356
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.035 Score=50.52 Aligned_cols=22 Identities=50% Similarity=0.747 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhc
Q 003325 207 VLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
+|.|.|++|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999953
No 357
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.10 E-value=0.42 Score=47.98 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=60.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEE--eCC--CCCHHHHHHHHHHhhcCCCCCC---CCC-Ccc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLT--VSQ--SPNVEQLRAKVWGFVSGCDSME---PNY-VIP 274 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~--v~~--~~~~~~l~~~i~~~l~~~~~~~---~~~-~~~ 274 (829)
..-.+++++|.+|.||||+|+.+.. ....-.+.++|-. +.. .....+...+++..++.....- +.. .-.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3567999999999999999999993 3333334453321 111 1122233445555544221100 000 001
Q ss_pred hhh--HHHHhhcCCcEEEEEcCCCCh------HhHHHhhhcC---CCceEEEEeeccccc
Q 003325 275 HWN--LQIQSKLGSRCLVVLDDVWSL------AVLEQLIFRV---PGCKTLVVSRFKFST 323 (829)
Q Consensus 275 ~~~--~~~~~~~~~~~LlVlDdv~~~------~~~~~l~~~~---~gs~iivTtR~~~~~ 323 (829)
+.| ...+.+.-++-++|.|..-+. .+.-.+.... -|-..+..|.+-.+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 112 122345678889999986543 2222222221 255666666666544
No 358
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.09 E-value=0.11 Score=55.71 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=32.6
Q ss_pred ccccccchhhHHHHHHhhcC-------------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR-------------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.++.+..+...+... ...+-|.++|++|+|||++|+.+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34677776666665544321 1246789999999999999999995
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.07 E-value=0.15 Score=54.80 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCc
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVI 273 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 273 (829)
.+.+++. ..-..|.|.|+.|.||||+.+.+.+ .+......++ +.+.++.... .... ..+......+ ...
T Consensus 113 ~l~~~~~--~~~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i--~tiEdp~E~~--~~~~-~~~i~q~evg--~~~ 181 (343)
T TIGR01420 113 VLRELAE--RPRGLILVTGPTGSGKSTTLASMID--YINKNAAGHI--ITIEDPIEYV--HRNK-RSLINQREVG--LDT 181 (343)
T ss_pred HHHHHHh--hcCcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEE--EEEcCChhhh--ccCc-cceEEccccC--CCC
Confidence 3444443 2347899999999999999999884 3443444444 3344332211 0000 0000000001 111
Q ss_pred chhhHHH-HhhcCCcEEEEEcCCCChHhHHH-hhhcCCCceEEEEeeccc
Q 003325 274 PHWNLQI-QSKLGSRCLVVLDDVWSLAVLEQ-LIFRVPGCKTLVVSRFKF 321 (829)
Q Consensus 274 ~~~~~~~-~~~~~~~~LlVlDdv~~~~~~~~-l~~~~~gs~iivTtR~~~ 321 (829)
..+...+ ..++..+=.|++|.+.+.+.+.. +.....|..|+.|.....
T Consensus 182 ~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 182 LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNS 231 (343)
T ss_pred cCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 1222222 33467788999999998887665 344455666555554443
No 360
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.07 E-value=0.073 Score=58.49 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC-CCCHHHHHHHHHH
Q 003325 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWG 259 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~ 259 (829)
.++.|..-..-.-++|.|.+|+|||||+..+.+... +.+-+ .++++-+++ ..++.++...+..
T Consensus 133 ~ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~d-v~V~~liGER~rEv~ef~~~~~~ 196 (461)
T PRK12597 133 VIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSG-SSVFAGVGERSREGHELYHEMKE 196 (461)
T ss_pred eecccCccccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCC-EEEEEcCCcchHHHHHHHHHHHh
Confidence 344444335567899999999999999998885322 22333 344565654 3456666666654
No 361
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.06 E-value=0.033 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 362
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.03 E-value=0.19 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++.|.|.+|+||||+|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999984
No 363
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.01 E-value=0.16 Score=56.40 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=35.9
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
..+-++|.++ ..-.++.|.|.+|+|||||+.+++.... +. ..+++|++....
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~--g~~vlYvs~Ees 119 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-AA--GGKVLYVSGEES 119 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-hc--CCeEEEEEcccc
Confidence 4566666533 4567999999999999999999985322 22 235668776543
No 364
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.99 E-value=0.026 Score=32.99 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.2
Q ss_pred ccceeeecccccCCCCCCccc
Q 003325 618 NLRSLWLEKVSISQLPKSSIP 638 (829)
Q Consensus 618 ~L~~L~l~~~~i~~lp~~~~~ 638 (829)
+|++|++++|.++.+|+++.+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877544
No 365
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.98 E-value=0.046 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....|.++|++|+||||+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999994
No 366
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.94 E-value=0.093 Score=57.48 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCC---CCCC
Q 003325 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPN 270 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~ 270 (829)
.++.|..-..-.-++|.|.+|+|||||+..+... .....+..++++-+++. .++.++.+++...=..... ....
T Consensus 134 aID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~ats 211 (463)
T PRK09280 134 VIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQM 211 (463)
T ss_pred eecccCCcccCCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECC
Confidence 3444443345678999999999999999988743 22222334446666543 4566666666543111100 0011
Q ss_pred CC--cch---------hhHHHHhhcCCcEEEEEcCCCC
Q 003325 271 YV--IPH---------WNLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 271 ~~--~~~---------~~~~~~~~~~~~~LlVlDdv~~ 297 (829)
+. ..+ ....++.-+++.+||++||+-.
T Consensus 212 d~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 212 NEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 11 111 1111221278999999999964
No 367
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.93 E-value=0.044 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 368
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.92 E-value=0.056 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999994
No 369
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.87 E-value=0.04 Score=53.00 Aligned_cols=21 Identities=52% Similarity=0.794 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.85 E-value=0.22 Score=54.53 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
...++.++|++|+||||.|..++. ........++..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEecc
Confidence 468999999999999999988884 2221122345455554
No 371
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.80 E-value=0.052 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003325 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
++|.|+|+.|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999963
No 372
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.80 E-value=0.17 Score=55.22 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCC--CCCCCCC--cchh--
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCD--SMEPNYV--IPHW-- 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~--~~~~~~~--~~~~-- 276 (829)
..-..++|+|+.|+|||||++.+..... . +..+++..-....++..+....+....... .....+. ..+.
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---p-d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARADA---F-DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---C-CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 4556899999999999999998884221 1 223434433344556555554444331111 0001111 1111
Q ss_pred ----hHHHHh--hcCCcEEEEEcCCCC
Q 003325 277 ----NLQIQS--KLGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ----~~~~~~--~~~~~~LlVlDdv~~ 297 (829)
...-+. -+++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 011111 268999999999864
No 373
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.79 E-value=0.047 Score=49.90 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999995
No 374
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.77 E-value=0.088 Score=55.16 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
.+++.+.|-|||||||+|.+.. ........ ++.-++....++..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A--~~lA~~g~-kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATA--VKLAESGK-KVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHH--HHHHHcCC-cEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999866 33444443 4667878777777666543
No 375
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.77 E-value=0.062 Score=58.91 Aligned_cols=42 Identities=10% Similarity=-0.130 Sum_probs=33.8
Q ss_pred ccccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++||++.++.+...+.. -.-|.+.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aala---g~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHcc---CCCEEEECCCChhHHHHHHHHHH
Confidence 3568998887777777753 34578999999999999999995
No 376
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.048 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003325 207 VLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~ 226 (829)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999876
No 377
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.77 E-value=0.042 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++.+.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999985
No 378
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.76 E-value=0.26 Score=46.71 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 208 LGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
+.|.|.+|+|||++|.++... ...+++++.-...++.+ ..+.|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI 44 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERI 44 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHH
Confidence 678999999999999998842 22345577666666543 33343
No 379
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.055 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|++|+||||||+.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999995
No 380
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.67 E-value=0.06 Score=46.16 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
.-..++|+|++|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45689999999999999999976
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.66 E-value=0.13 Score=57.09 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred hhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003325 191 GKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 191 ~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
....+-++|.++ ..-.++.|.|.+|+|||||+..++.. .... ..+++|++...
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKN-QMKVLYVSGEE 132 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCcEEEEECcC
Confidence 345666666533 56689999999999999999998743 2222 23566777654
No 382
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.62 E-value=0.058 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhccc
Q 003325 208 LGICGIGGSGKTTLALEVCRDHQ 230 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~~~ 230 (829)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997543
No 383
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.62 E-value=0.13 Score=56.22 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=55.6
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCC---CCCCC
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDS---MEPNY 271 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~---~~~~~ 271 (829)
++.|..-..-.-++|.|.+|+|||||+..+... ........++++-++. ..++.++.+++...=..... ....+
T Consensus 134 ID~l~pig~GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd 211 (461)
T TIGR01039 134 IDLLAPYAKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMN 211 (461)
T ss_pred ecccCCcccCCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCC
Confidence 444443355678999999999999999998853 2222233444666654 34566666666432110000 00111
Q ss_pred C--cchh---------hHHHHhhcCCcEEEEEcCCCC
Q 003325 272 V--IPHW---------NLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 272 ~--~~~~---------~~~~~~~~~~~~LlVlDdv~~ 297 (829)
. ..+. ...++..+++.+||++||+-.
T Consensus 212 ~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 212 EPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1 1111 111222257999999999974
No 384
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.62 E-value=0.046 Score=50.61 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999994
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.60 E-value=0.062 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999985
No 386
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.57 E-value=0.056 Score=52.94 Aligned_cols=25 Identities=44% Similarity=0.566 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.+++|+|.+|.||||||+.+.-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 3556899999999999999999983
No 387
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.23 Score=54.77 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccc-cccccCCeEEEEEeCC
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQ-VTSYFNNRILFLTVSQ 246 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~~wv~v~~ 246 (829)
.+++.++|++|+||||++..++.... ..+. .++..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCc
Confidence 46999999999999999988874222 1222 2455666543
No 388
>PRK05439 pantothenate kinase; Provisional
Probab=93.55 E-value=0.088 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999999998884
No 389
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.55 E-value=0.15 Score=55.35 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCC---CCCCCCc--chh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPNYVI--PHW 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~~~~--~~~ 276 (829)
..-..++|+|..|+|||||++.+++.. ..+..| .+-+++. .++.++.+.++..-..... ....+.. .+.
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~V-i~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIV-VGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC----CCCEEE-EEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 455789999999999999999998521 113333 4555543 3455566655433111100 0011111 111
Q ss_pred ------hHHHHhh--cCCcEEEEEcCCCC
Q 003325 277 ------NLQIQSK--LGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ------~~~~~~~--~~~~~LlVlDdv~~ 297 (829)
...-+.. +++.+||++||+-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 0111222 78999999999974
No 390
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.53 E-value=0.064 Score=49.59 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSY 234 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~ 234 (829)
..||-|.|.+|+||||||+++.. +....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHc
Confidence 35889999999999999999994 44444
No 391
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.51 E-value=0.061 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
...-+|+|.|+.|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999998775
No 392
>PRK13949 shikimate kinase; Provisional
Probab=93.50 E-value=0.059 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+-|.|+|++|+||||+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999995
No 393
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.50 E-value=0.087 Score=52.99 Aligned_cols=59 Identities=32% Similarity=0.439 Sum_probs=37.1
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
.+-++|.++ ..-+++.|.|++|+|||++|.++.. .....+...++|++...+ ...+.+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS---HHHHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCC--HHHHHHH
Confidence 455556433 5678999999999999999998773 222222345668877644 3444444
No 394
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.49 E-value=0.058 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999984
No 395
>PRK13947 shikimate kinase; Provisional
Probab=93.49 E-value=0.051 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 396
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.49 E-value=0.19 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhc
Q 003325 208 LGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~ 228 (829)
+++.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999853
No 397
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.48 E-value=0.16 Score=57.34 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+.-..|+|+|+.|+|||||.+.+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3556799999999999999999953
No 398
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.47 E-value=0.092 Score=55.13 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHH
Q 003325 206 SVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (829)
+++.+.|-||+||||+|.+.+-. ..+. ..++..++....++..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~-G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARR-GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHT-TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhC-CCCeeEeecCCCccHHHHh
Confidence 68899999999999999877732 2222 2356667766665555544
No 399
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.47 E-value=0.067 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
..++.|.||+|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999964
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.46 E-value=0.24 Score=52.64 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
...++++++|+.|+||||++..++... .... .++.+++....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCcc
Confidence 356899999999999999999988532 1222 35656776543
No 401
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.45 E-value=0.18 Score=51.86 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHH
Q 003325 196 KEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVW 258 (829)
Q Consensus 196 ~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~ 258 (829)
-+++.++ ..-+++.|.|.+|+|||++|.++.. +...+.. .++|++.... ..++.+.+.
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge-~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGE-PVLYVSTEES--PEELLENAR 71 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCC-cEEEEEecCC--HHHHHHHHH
Confidence 3344333 6778999999999999999999984 4444443 5669888754 444444443
No 402
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.37 E-value=0.17 Score=53.34 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQSK 283 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 283 (829)
.-..+.|.|+.|.||||+++.+... .... .+++. +.+.....--...... +.....................+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~--~~~~--~~iv~--ied~~El~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE--IPKD--ERIIT--IEDTREIFLPHPNYVH-LFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc--CCcc--ccEEE--EcCccccCCCCCCEEE-EEecCCCCCcCccCHHHHHHHHh
Confidence 4579999999999999999998842 2222 12322 2211110000000000 00000000001111112222234
Q ss_pred cCCcEEEEEcCCCChHhHHHhhhcCCCceE-EEEeecc
Q 003325 284 LGSRCLVVLDDVWSLAVLEQLIFRVPGCKT-LVVSRFK 320 (829)
Q Consensus 284 ~~~~~LlVlDdv~~~~~~~~l~~~~~gs~i-ivTtR~~ 320 (829)
+...=.+++|.+...+.++.+.....|... +.|+...
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAVNTGHPGSITTLHAG 253 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 666778999999998877765554455544 5555444
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.36 E-value=0.27 Score=50.48 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH-Hh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQI-QS 282 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~ 282 (829)
.-.+|.|.|+.|.||||++..+.+ .+.. ...++ +.+.++.+.. ...+ .++. ...... ..+...+ ..
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~--~i~~-~~~~i--itiEdp~E~~--~~~~-~q~~----v~~~~~-~~~~~~l~~~ 145 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALS--ELNT-PEKNI--ITVEDPVEYQ--IPGI-NQVQ----VNEKAG-LTFARGLRAI 145 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHh--hhCC-CCCeE--EEECCCceec--CCCc-eEEE----eCCcCC-cCHHHHHHHH
Confidence 456899999999999999998874 2222 12233 3343332211 0000 0000 000001 1122222 23
Q ss_pred hcCCcEEEEEcCCCChHhHHHh-hhcCCCceEEEEee
Q 003325 283 KLGSRCLVVLDDVWSLAVLEQL-IFRVPGCKTLVVSR 318 (829)
Q Consensus 283 ~~~~~~LlVlDdv~~~~~~~~l-~~~~~gs~iivTtR 318 (829)
++...=.++++++.+.+....+ .....|-. ++||=
T Consensus 146 lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~-v~tTl 181 (264)
T cd01129 146 LRQDPDIIMVGEIRDAETAEIAVQAALTGHL-VLSTL 181 (264)
T ss_pred hccCCCEEEeccCCCHHHHHHHHHHHHcCCc-EEEEe
Confidence 4667788999999998765544 34445555 44443
No 404
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.061 Score=54.52 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccc--cccCCeE
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVT--SYFNNRI 239 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~ 239 (829)
-|+|.++||+|.|||+|++++++.-.++ +.|..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~ 213 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ 213 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce
Confidence 4899999999999999999999764443 4454444
No 405
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.33 E-value=0.11 Score=51.23 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=39.8
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHH
Q 003325 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWG 259 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~ 259 (829)
.++.+..-..-.-++|.|.+|+|||+|+..+.++.. . + .++++.+++. .++.++.+++..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~--~--d-~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD--A--D-VVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT--T--T-EEEEEEESECHHHHHHHHHHHHH
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc--c--c-ceeeeeccccchhHHHHHHHHhh
Confidence 455554334457889999999999999999996432 1 1 2247777654 456666666643
No 406
>PRK14530 adenylate kinase; Provisional
Probab=93.30 E-value=0.062 Score=53.53 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.|.|+|++|+||||+|+.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 407
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.22 E-value=0.14 Score=52.54 Aligned_cols=41 Identities=29% Similarity=0.513 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ 246 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~ 246 (829)
..-+++.|.|++|.||||+|.+++.. ..+. ...+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~-~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT-QASR--GNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH-HHhC--CCcEEEEEecC
Confidence 45689999999999999999998642 1222 33566888764
No 408
>PLN02348 phosphoribulokinase
Probab=93.22 E-value=0.1 Score=55.63 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.6
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.......+..-+|+|.|.+|+||||+|+.+.+
T Consensus 40 ~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 40 VVALAADDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred HHhhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333345678999999999999999999994
No 409
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.074 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988773
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=93.20 E-value=0.16 Score=40.84 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVC 226 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~ 226 (829)
+-+++.|.|++|.|||+++....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHH
Confidence 45678889999999995554444
No 411
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.023 Score=53.78 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=48.6
Q ss_pred CCcEEEeccccccccchhhccCCCCCCEEecccCCcCCcccc-cc-cCCCCCCEEeccCCcCCCCCc-cccCCCccccEe
Q 003325 693 SLKNLSVTNCHSLQELPADIGKMKSLQILRLYACPHLRTLPA-RI-CELVCLKYLNISQCVSLSCLP-QGIGNLIRLEKI 769 (829)
Q Consensus 693 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~-~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L 769 (829)
.++.++-+++.....=-..+.+++.++.|.+.+|......-- .+ +-.++|+.|+|++|+.+++-- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777654444445667777788888888777654321 11 134677777777777666421 234556666666
Q ss_pred eccc
Q 003325 770 DMRE 773 (829)
Q Consensus 770 ~l~~ 773 (829)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 412
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.16 E-value=0.47 Score=52.91 Aligned_cols=114 Identities=23% Similarity=0.202 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCCcHHH-HHHHHhhccccccccCCeEEEEEeCCCCCHH--HHHHHHHHhhcCCCCCCC----------
Q 003325 203 DDLSVLGICGIGGSGKTT-LALEVCRDHQVTSYFNNRILFLTVSQSPNVE--QLRAKVWGFVSGCDSMEP---------- 269 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~--~l~~~i~~~l~~~~~~~~---------- 269 (829)
..-+||.|+|-.|.|||| ||+.+|.+-. -+.+ -+-+.++..+. .+.+.+.++++..-+...
T Consensus 369 r~n~vvvivgETGSGKTTQl~QyL~edGY----~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT 442 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQLAQYLYEDGY----ADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT 442 (1042)
T ss_pred hhCcEEEEEecCCCCchhhhHHHHHhccc----ccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC
Confidence 356899999999999977 6777775322 1223 34555555444 345666666643322111
Q ss_pred --CCCcch---hhHHHHhh----cCCcEEEEEcCCCChH----h----HHHhhhcCCCceEEEEeecccc
Q 003325 270 --NYVIPH---WNLQIQSK----LGSRCLVVLDDVWSLA----V----LEQLIFRVPGCKTLVVSRFKFS 322 (829)
Q Consensus 270 --~~~~~~---~~~~~~~~----~~~~~LlVlDdv~~~~----~----~~~l~~~~~gs~iivTtR~~~~ 322 (829)
...+.- .-...+.+ -.|--.||+|.+++-. . +......-..-|+||||-.-..
T Consensus 443 ~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 443 SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 111100 00111112 2455688899988532 2 2222233347899999876543
No 413
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.16 E-value=0.081 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999984
No 414
>PHA02774 E1; Provisional
Probab=93.15 E-value=0.34 Score=54.15 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=28.2
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+..+|.+...-.-+.|+|++|.|||.+|..+.+
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 345666665434456899999999999999999994
No 415
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.15 E-value=0.056 Score=51.16 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|.++|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999985
No 416
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.09 E-value=0.17 Score=54.52 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=33.7
Q ss_pred ccccccchhhHHHHHHhhcC-------------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIGR-------------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..+..+...+... -..+.|.++|++|+||||||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45677777777776666320 1246789999999999999999984
No 417
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.07 E-value=0.082 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...|.|+|+.|+||||+|+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 45699999999999999999995
No 418
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.04 E-value=0.094 Score=50.74 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccC
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFN 236 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 236 (829)
.++|.|+|+.|+|||||++.++. ....+|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccc
Confidence 47899999999999999999994 4555663
No 419
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.99 E-value=0.086 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 420
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.99 E-value=0.12 Score=51.19 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.4
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 201 GRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 201 ~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++++|+++|+.|+|||||..++..
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999999985
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.97 E-value=0.39 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.+|++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999853
No 422
>PRK14527 adenylate kinase; Provisional
Probab=92.96 E-value=0.091 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
...+|.|.|++|+||||+|+.+++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.94 E-value=0.074 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 424
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.92 E-value=0.64 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999884
No 425
>PRK14526 adenylate kinase; Provisional
Probab=92.92 E-value=0.29 Score=48.30 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|.|+|++|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999884
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.91 E-value=0.39 Score=57.09 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCC---hHhHHHh----hhc--CCCceEEEEeeccccc----cccc--eEEccCCCHHHHHHHHHHhhcC
Q 003325 285 GSRCLVVLDDVWS---LAVLEQL----IFR--VPGCKTLVVSRFKFST----VLND--TYEVELLREDESLSLFCYSAFG 349 (829)
Q Consensus 285 ~~~~LlVlDdv~~---~~~~~~l----~~~--~~gs~iivTtR~~~~~----~~~~--~~~l~~L~~~e~~~Lf~~~a~~ 349 (829)
..+-|+++|..-. ......+ ... -.|+.+|+||...... .... .+.+. ++. +... |... +.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Yk-l~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYK-LL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEE-EC
Confidence 4789999999873 2222222 221 2488999999987653 1111 11111 111 1111 0001 11
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhcc
Q 003325 350 QKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSK 400 (829)
Q Consensus 350 ~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~ 400 (829)
...+ -...|-+|++++ |+|-.+.--|..+-+......+.++++|..
T Consensus 477 ~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGIP----GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 134677788877 788877777777665555566666666654
No 427
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.91 E-value=0.11 Score=58.03 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=25.7
Q ss_pred HHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 196 KEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 196 ~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++.. .++..+|+|.|++|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444433 35678999999999999999999984
No 428
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.90 E-value=0.29 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|+|++|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999988874
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.85 E-value=0.55 Score=56.06 Aligned_cols=174 Identities=18% Similarity=0.162 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcc--------------ccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCC
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDH--------------QVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSME 268 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~--------------~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~ 268 (829)
.+.+++.|.|+.+.||||+.+.+.-.. ..-..|+ .+ +..++...++..-...+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i-~~~ig~~~si~~~lStfS~--------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EI-FADIGDEQSIEQSLSTFSG--------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eE-EEecCCccchhhchhHHHH---------
Confidence 356789999999999999998875310 0111222 22 3333322222111111100
Q ss_pred CCCCcchhhHHHHhhcCCcEEEEEcCCCC---hHhH----HHhhhc--CCCceEEEEeeccccc----cccc--eEEccC
Q 003325 269 PNYVIPHWNLQIQSKLGSRCLVVLDDVWS---LAVL----EQLIFR--VPGCKTLVVSRFKFST----VLND--TYEVEL 333 (829)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~LlVlDdv~~---~~~~----~~l~~~--~~gs~iivTtR~~~~~----~~~~--~~~l~~ 333 (829)
............ ..+-|+++|..-. ...- ..+... ..|+.+|+||...... .... .+.+.
T Consensus 394 ---~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 394 ---HMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred ---HHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 001111122222 4677999999873 2221 122211 2478999999987654 1111 11121
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHhcCCChhHHHHHHHHhcc
Q 003325 334 LREDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKVIGASLREQPEMYWTSAKKRLSK 400 (829)
Q Consensus 334 L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~w~~~l~~l~~ 400 (829)
++. +.... .+-+....+ -...|-.|++.+ |+|-.+.--|..+-+......+.+++++..
T Consensus 469 ~d~-~~l~~--~Ykl~~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 469 FDE-ETLRP--TYRLLIGIP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred Eec-CcCcE--EEEEeeCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111 11110 011111111 134677788877 788877777776665555566666666654
No 430
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.83 E-value=0.18 Score=55.22 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=55.5
Q ss_pred HHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCC---CCCCC
Q 003325 196 KEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPNY 271 (829)
Q Consensus 196 ~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~~ 271 (829)
++.|..-..-.-++|.|.+|+|||+|+..+.+... +.+-+ .++++-++.. .++.++.+.+...=..... ....+
T Consensus 129 ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~-v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~ 206 (449)
T TIGR03305 129 IDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQG-VSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMN 206 (449)
T ss_pred eccccccccCCEEEeecCCCCChhHHHHHHHHHHH-hcCCC-EEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCC
Confidence 44443334567899999999999999999886422 22223 4447777654 3455666665432111000 00111
Q ss_pred C--cchh---------hHHHHhhcCCcEEEEEcCCCC
Q 003325 272 V--IPHW---------NLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 272 ~--~~~~---------~~~~~~~~~~~~LlVlDdv~~ 297 (829)
. ..+. ...++.-+++.+||++||+-.
T Consensus 207 ~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 207 EPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1 1111 111211258999999999974
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.82 E-value=0.16 Score=49.50 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccccccc-cCCeEEEEEeCCCCCH
Q 003325 207 VLGICGIGGSGKTTLALEVCRDHQVTSY-FNNRILFLTVSQSPNV 250 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~~wv~v~~~~~~ 250 (829)
.|+|.|-||+||||+|..+.. .-...+ | .++-|+....++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~-~l~~~~~~--~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK-RLLSKGGY--NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH-HHHhcCCc--eEEEEeCCCCCCh
Confidence 589999999999999998552 122222 4 3545555555443
No 432
>PRK13975 thymidylate kinase; Provisional
Probab=92.81 E-value=0.087 Score=51.65 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999995
No 433
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.81 E-value=0.3 Score=49.43 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=39.8
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..+-++|.++ ..-+++.|.|++|.|||++|.++... ..+. ...++|++... +..++.+.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 4455566543 56789999999999999999987632 2222 23566887764 455555553
No 434
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.81 E-value=0.074 Score=49.41 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 435
>PRK13948 shikimate kinase; Provisional
Probab=92.80 E-value=0.092 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 436
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.79 E-value=0.1 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+.|.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999999984
No 437
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.39 Score=54.69 Aligned_cols=91 Identities=22% Similarity=0.255 Sum_probs=53.7
Q ss_pred ccccchhhHHHHHHhhc----------C-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHH
Q 003325 185 GIGMALGKNKVKEMVIG----------R-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQL 253 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~----------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l 253 (829)
+=|.++-+.+|.+-+.- + ...+-|.++|++|.|||-+|++|+.. | ..-|++|..+ ++
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE------c--sL~FlSVKGP----EL 741 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE------C--SLNFLSVKGP----EL 741 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh------c--eeeEEeecCH----HH
Confidence 34555555565554421 1 23457899999999999999999942 3 3346677543 11
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHHh-hcCCcEEEEEcCCCCh
Q 003325 254 RAKVWGFVSGCDSMEPNYVIPHWNLQIQS-KLGSRCLVVLDDVWSL 298 (829)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~LlVlDdv~~~ 298 (829)
+..-. + ..++......++ ...++|.|++|.+++.
T Consensus 742 LNMYV----G-------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 742 LNMYV----G-------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHh----c-------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 1 112222333332 3678999999999863
No 438
>PRK08149 ATP synthase SpaL; Validated
Probab=92.76 E-value=0.32 Score=53.01 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC-CCCCHHHHHHHHHHhhcCCCC---CCCCCCcc--hh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS-QSPNVEQLRAKVWGFVSGCDS---MEPNYVIP--HW 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~--~~ 276 (829)
..-..++|+|.+|+|||||...+++.... +..+ ...+. ...++.++....+........ ....+... +.
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v-~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFV-IGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCCC----CeEE-EEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 45678899999999999999999853221 2222 33343 334556666655543221110 00111111 10
Q ss_pred ------hHHHHh--hcCCcEEEEEcCCCC
Q 003325 277 ------NLQIQS--KLGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ------~~~~~~--~~~~~~LlVlDdv~~ 297 (829)
...-+. .+++.+||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 111111 278999999999964
No 439
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.59 Score=55.22 Aligned_cols=52 Identities=21% Similarity=0.116 Sum_probs=37.3
Q ss_pred ccccccchhhHHHHHHhhcC-----C--CceEEEEEcCCCCcHHHHHHHHhhccccccccC
Q 003325 183 LMGIGMALGKNKVKEMVIGR-----D--DLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN 236 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~~-----~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 236 (829)
..++|-++.+..|.+.+... + ......+.|+.|+|||-||+++. ..+-+..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA--~~~Fgse~ 620 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALA--EYVFGSEE 620 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHH--HHHcCCcc
Confidence 34577777777777777543 2 45677899999999999999998 34433333
No 440
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.16 Score=51.34 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhcccccccc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYF 235 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 235 (829)
..+..++|||++|.|||-+|+.|+ ....-.|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Va--a~mg~nf 194 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVA--ATMGVNF 194 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHH--HhcCCce
Confidence 456789999999999999999999 3444444
No 441
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.71 E-value=0.29 Score=53.47 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCC---CCCCCCc--chh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPNYVI--PHW 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~~~~--~~~ 276 (829)
..-..++|+|..|+|||||++.+++... . +..+ ++-++.. .++.++..+.+..-..... ....+.. .+.
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~---~-d~~v-~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD---A-DVSV-IGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC---C-CEEE-EEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 4567899999999999999999995322 1 2233 4555543 4455555544433111000 0011111 111
Q ss_pred ------hHHHHhh--cCCcEEEEEcCCCC
Q 003325 277 ------NLQIQSK--LGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ------~~~~~~~--~~~~~LlVlDdv~~ 297 (829)
...-+.. +++.+||++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 0111222 78999999999964
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.70 E-value=0.093 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999999985
No 443
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.69 E-value=0.27 Score=49.65 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 193 NKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 193 ~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..+-++|.++ ..-+++.|.|.+|+|||++|.++... .++. ..+++|++..+. ...+.+++
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 4455556433 56789999999999999999998632 2232 336678888643 44555443
No 444
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.66 E-value=0.26 Score=53.68 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccc------------cccCCeEEEEEeCCCCCHHHHHHHHHHhhc-CCCCC--
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVT------------SYFNNRILFLTVSQSPNVEQLRAKVWGFVS-GCDSM-- 267 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~-~~~~~-- 267 (829)
..-+-++|.|-+|+|||||+..+.+..... +.| .++++-+++..+..+.+.+.+..-+ .....
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~--v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv 216 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNF--AIVFAAMGVNMETARFFKQDFEENGSMERVCLF 216 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCce--EEEEEEeeeehHHHHHHHHHHHhcCCcceEEEE
Confidence 455778999999999999999998654310 111 3446777777666665555554432 11100
Q ss_pred -CCCCC--cch---------hhHHHHhhcCCcEEEEEcCCCC
Q 003325 268 -EPNYV--IPH---------WNLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 268 -~~~~~--~~~---------~~~~~~~~~~~~~LlVlDdv~~ 297 (829)
...+. ..+ ....++.-+++.+||++||+-.
T Consensus 217 ~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 217 LNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred EECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 01111 111 1122222268999999999964
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.49 E-value=0.74 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999998873
No 446
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.86 Score=51.52 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCcccccccchhhHHHHHHh---hcC--------CCceEEEEEcCCCCcHHHHHHHHhhcccc
Q 003325 180 LGNLMGIGMALGKNKVKEMV---IGR--------DDLSVLGICGIGGSGKTTLALEVCRDHQV 231 (829)
Q Consensus 180 ~~~~~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 231 (829)
.....+-|.++.++++.+.+ .+. .-++-|..+|++|.|||.||+++.....|
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34456788887777666554 432 23567899999999999999999965443
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.43 E-value=0.1 Score=50.10 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-.|++|+|++|+|||||-+.+-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3567999999999999999998873
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.43 E-value=0.1 Score=47.61 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.-.+++|+|..|+|||||.+.++.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEEccCCCccccceeeecc
Confidence 346899999999999999999985
No 449
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.43 E-value=0.67 Score=52.87 Aligned_cols=46 Identities=22% Similarity=0.042 Sum_probs=35.5
Q ss_pred cccccccchhhHHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 182 NLMGIGMALGKNKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 182 ~~~~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...++|....+.++++.+.. ...-..|.|+|..|.||+++|+.+++
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 34678988888888877642 23345588999999999999999874
No 450
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.43 E-value=0.1 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++|+|++|.||||+++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999995
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.41 E-value=0.099 Score=49.51 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhc
Q 003325 208 LGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~ 228 (829)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999854
No 452
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.40 E-value=0.68 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..-..|+|+|..|+||||||+.+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5667899999999999999999874
No 453
>PRK05922 type III secretion system ATPase; Validated
Probab=92.40 E-value=0.43 Score=52.07 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCCC---CCCCCc--chh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDSM---EPNYVI--PHW 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~---~~~~~~--~~~ 276 (829)
..-..++|.|..|+|||||.+.+.+.. ..+..+ .+.++. ..+....+.+........... ...+.. .+.
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gv-i~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINV-IALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----CCCceE-EEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 455679999999999999999998532 122233 333433 334445554444332211100 011111 110
Q ss_pred ------hHHHHh--hcCCcEEEEEcCCCC
Q 003325 277 ------NLQIQS--KLGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ------~~~~~~--~~~~~~LlVlDdv~~ 297 (829)
...-+. -+++.+||++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 011122 278999999999974
No 454
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.39 E-value=0.074 Score=31.03 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=4.1
Q ss_pred CcEEEeccc
Q 003325 694 LKNLSVTNC 702 (829)
Q Consensus 694 L~~L~l~~~ 702 (829)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 455
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.36 E-value=0.093 Score=49.00 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
|++|+|+.|+|||||+.++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999995
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.34 E-value=0.095 Score=49.61 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999994
No 457
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.33 E-value=0.47 Score=49.86 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC-CCCCHHHHHHHHHHhhcCCCC---CCCCCCc--chh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS-QSPNVEQLRAKVWGFVSGCDS---MEPNYVI--PHW 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~-~~~~~~~l~~~i~~~l~~~~~---~~~~~~~--~~~ 276 (829)
..-..++|+|..|.|||||.+.+.+... . +..+ ..-++ ...++.++....+..-..... ....+.. .+.
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~-~~~v-i~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT---A-DVNV-IALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEE-EEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 4556889999999999999999985322 1 2233 34443 344555555544433111000 0011111 111
Q ss_pred ------hHHHHh--hcCCcEEEEEcCCCC
Q 003325 277 ------NLQIQS--KLGSRCLVVLDDVWS 297 (829)
Q Consensus 277 ------~~~~~~--~~~~~~LlVlDdv~~ 297 (829)
...-+. -+++.+||++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 011111 268999999999864
No 458
>PRK13946 shikimate kinase; Provisional
Probab=92.31 E-value=0.1 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.|.++|++|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999994
No 459
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.31 E-value=0.11 Score=47.07 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003325 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
+-|.++|..|+|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999864
No 460
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.30 E-value=0.23 Score=53.10 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=41.6
Q ss_pred ccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHH
Q 003325 185 GIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLR 254 (829)
Q Consensus 185 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~ 254 (829)
++|.+.....+...+. .-+-+.+.|++|+|||+||+.++. ..... .+++.........++.
T Consensus 26 ~~g~~~~~~~~l~a~~---~~~~vll~G~PG~gKT~la~~lA~--~l~~~----~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 26 VVGDEEVIELALLALL---AGGHVLLEGPPGVGKTLLARALAR--ALGLP----FVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeccHHHHHHHHHHHH---cCCCEEEECCCCccHHHHHHHHHH--HhCCC----eEEEecCCCCCHHHhc
Confidence 6776666665555554 345678999999999999999994 34333 3466666666666654
No 461
>PRK05973 replicative DNA helicase; Provisional
Probab=92.28 E-value=0.36 Score=48.33 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHH
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKV 257 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i 257 (829)
..-.++.|.|.+|+|||++|.++.... .++ ...+++++.... ..++...+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA-MKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH-Hhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 466789999999999999999987432 232 234556766543 45555554
No 462
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.27 E-value=4.6 Score=41.75 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=28.5
Q ss_pred hHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 192 KNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 192 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+++...+..+.-.....++|+.|+||+++|..+..
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~ 41 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELAS 41 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHH
Confidence 356666776555667888999999999999988774
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.20 E-value=0.3 Score=55.17 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 194 KVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 194 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
.+-++|.++ ..-+++.|.|++|.||||+|.+++. .-...+...++|++... +..++.+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~--~g~~~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY--NGIIHFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HHHHhCCCCEEEEEEec--CHHHHHHH
Confidence 344555433 4678999999999999999999863 22223334566888763 34444443
No 464
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.20 E-value=0.17 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
-+.|.|.|+.|+||||+++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999984
No 465
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.17 E-value=0.1 Score=46.70 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCC
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQS 247 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~ 247 (829)
..-|.|.|.+|+||||+|..++. . ..| -|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~--~~~----~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--K--TGL----EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--H--hCC----ceEehhhH
Confidence 34588999999999999999983 1 122 27777744
No 466
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.17 E-value=0.12 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhcc
Q 003325 207 VLGICGIGGSGKTTLALEVCRDH 229 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~ 229 (829)
.|+++|.+|+|||||+..++++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 467
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.15 E-value=0.23 Score=53.23 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=57.3
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccC--CeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCC
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFN--NRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNY 271 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~ 271 (829)
.+.+++.. .-..|.|+|+.|+||||+++.+.+ .+....+ .++ +++.++.... ...+..............
T Consensus 125 ~~~~~~~~--~~glilI~GpTGSGKTTtL~aLl~--~i~~~~~~~~~I--vt~EdpiE~~--~~~~~~~~~~v~Q~~v~~ 196 (358)
T TIGR02524 125 AIIDAIAP--QEGIVFITGATGSGKSTLLAAIIR--ELAEAPDSHRKI--LTYEAPIEFV--YDEIETISASVCQSEIPR 196 (358)
T ss_pred HHHHHHhc--cCCEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCcEE--EEeCCCceEe--ccccccccceeeeeeccc
Confidence 35555542 457999999999999999999884 2222222 123 3333332210 011100000000000000
Q ss_pred CcchhhHH-HHhhcCCcEEEEEcCCCChHhHH-HhhhcCCCceEEEEe
Q 003325 272 VIPHWNLQ-IQSKLGSRCLVVLDDVWSLAVLE-QLIFRVPGCKTLVVS 317 (829)
Q Consensus 272 ~~~~~~~~-~~~~~~~~~LlVlDdv~~~~~~~-~l~~~~~gs~iivTt 317 (829)
....+... ...++..+-.+++..+.+.+... .+.....|-.| +||
T Consensus 197 ~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v-~tT 243 (358)
T TIGR02524 197 HLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAALTGHPV-YTT 243 (358)
T ss_pred cccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHHcCCcE-EEe
Confidence 11122222 23446677888999999888765 44444556554 444
No 468
>PLN02200 adenylate kinase family protein
Probab=92.14 E-value=0.13 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999984
No 469
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.13 E-value=0.15 Score=61.58 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCC--eEEEEEeCCC----CCHH--HHHHHHHHhhcCCCCCCCCCCcchh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNN--RILFLTVSQS----PNVE--QLRAKVWGFVSGCDSMEPNYVIPHW 276 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~~wv~v~~~----~~~~--~l~~~i~~~l~~~~~~~~~~~~~~~ 276 (829)
..-+.|+|.+|.||||+.+.+.-. ...+.+.. ...++.+... .... .+..-+...+....... ...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~-~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~--~~~--- 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALW-LAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK--QLI--- 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHH-hccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc--hhh---
Confidence 447899999999999999888742 12222211 1123333211 1111 12222222222221111 111
Q ss_pred hHHHHhhcCCcEEEEEcCCCCh---------HhHHHhhhcCCCceEEEEeeccccc---cccceEEccCCCHHHHHHH--
Q 003325 277 NLQIQSKLGSRCLVVLDDVWSL---------AVLEQLIFRVPGCKTLVVSRFKFST---VLNDTYEVELLREDESLSL-- 342 (829)
Q Consensus 277 ~~~~~~~~~~~~LlVlDdv~~~---------~~~~~l~~~~~gs~iivTtR~~~~~---~~~~~~~l~~L~~~e~~~L-- 342 (829)
....+.++..++++.+|.++.. ..+..+.+..|.+.||+|+|..... ......++..+.++.-...
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 1112345789999999998854 2366677788999999999988754 2334455555554433322
Q ss_pred ------HHHhhcCCCCCCCc-hhH---HHHHHHHHHcCCchhHHHHHHHHhc------CCChhHHHHHHHHhc
Q 003325 343 ------FCYSAFGQKTIPPS-ANE---NLVKQIVKKCKGLPLALKVIGASLR------EQPEMYWTSAKKRLS 399 (829)
Q Consensus 343 ------f~~~a~~~~~~~~~-~~~---~~~~~i~~~~~g~PLai~~~~~~l~------~~~~~~w~~~l~~l~ 399 (829)
+....++....... ... .-..+-++.....|+++.+.+..-. .....-++.+++.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 22222222221100 111 1112334444788999988875443 123445555555543
No 470
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.13 E-value=0.11 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+-|.++||.|+||||+.+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3588999999999999999984
No 471
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.13 E-value=0.13 Score=53.01 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=28.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeC
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVS 245 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~ 245 (829)
...++|.++|++|+||||++..++.. .... ..++.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~-g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQ-GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhc-CCEEEEEeCC
Confidence 45789999999999999999988843 3222 2356566654
No 472
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.11 E-value=0.11 Score=51.51 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
+....|.++||+|.||||..+.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45668889999999999999999854
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.11 E-value=0.13 Score=54.29 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEe
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTV 244 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v 244 (829)
....+++++|++|+||||++..++.. .... ..++..+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~-g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK--YKAQ-GKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhc-CCeEEEEec
Confidence 35689999999999999999999853 3222 235545544
No 474
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.51 Score=46.52 Aligned_cols=44 Identities=27% Similarity=0.145 Sum_probs=33.6
Q ss_pred cccccchhhHHHHHHhhc------------CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIG------------RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+=|-.+.++++.+..-- -+..+-|..+|++|.|||-+|++|+|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 445666777776665421 15678899999999999999999996
No 475
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=1.3 Score=50.33 Aligned_cols=124 Identities=22% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH-
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSMEPNYVIPHWNLQIQ- 281 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~- 281 (829)
...+.+.++|++|.|||.||+++++ .....| +.+... .+..+.+ + .....+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~----~l~sk~v----G-------esek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS----ELLSKWV----G-------ESEKNIRELFEK 330 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----HHhcccc----c-------hHHHHHHHHHHH
Confidence 3566899999999999999999995 233333 333211 1110000 0 01111111111
Q ss_pred hhcCCcEEEEEcCCCChH-------------hHHHhhhc----CCCc-eEEEEeeccccc---------cccceEEccCC
Q 003325 282 SKLGSRCLVVLDDVWSLA-------------VLEQLIFR----VPGC-KTLVVSRFKFST---------VLNDTYEVELL 334 (829)
Q Consensus 282 ~~~~~~~LlVlDdv~~~~-------------~~~~l~~~----~~gs-~iivTtR~~~~~---------~~~~~~~l~~L 334 (829)
..+..++.|++|+++... ....+... -+.+ .++|.+.+.... .....+.++.-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 125678999999997421 22222221 1222 233444443322 12457889999
Q ss_pred CHHHHHHHHHHhhcC
Q 003325 335 REDESLSLFCYSAFG 349 (829)
Q Consensus 335 ~~~e~~~Lf~~~a~~ 349 (829)
+.++..+.|+.+.-.
T Consensus 411 d~~~r~~i~~~~~~~ 425 (494)
T COG0464 411 DLEERLEIFKIHLRD 425 (494)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999988743
No 476
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.05 E-value=0.18 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhhccccccccCCeE
Q 003325 205 LSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRI 239 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 239 (829)
...|.|-|+.|+|||||..+.+ ...++.|...+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~--~~L~~~~~~aV 45 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTL--RALKDEYKIAV 45 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHH--HHHHhhCCeEE
Confidence 4789999999999999999999 56777776544
No 477
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.93 E-value=0.64 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998874
No 478
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.92 E-value=10 Score=39.66 Aligned_cols=159 Identities=6% Similarity=-0.017 Sum_probs=85.6
Q ss_pred HHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhcc---c---cc-cccCCeEEEEEe-CCCCCHHHHHHHHHHhhcCCC
Q 003325 194 KVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDH---Q---VT-SYFNNRILFLTV-SQSPNVEQLRAKVWGFVSGCD 265 (829)
Q Consensus 194 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~---~~-~~F~~~~~wv~v-~~~~~~~~l~~~i~~~l~~~~ 265 (829)
.+.+.+..+.-.++..++|..|.||+++|..+.+.- . +. +..+..+.++.. +....++++. .+.+.+.-..
T Consensus 7 ~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~ 85 (299)
T PRK07132 7 FLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS 85 (299)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC
Confidence 344455444556778899999999999999887421 0 01 111212223322 2223333333 2333321110
Q ss_pred CCCCCCCcchhhHHHHhhcCCcEEEEEcCCCCh--HhHHHhhh---cC-CCceEEEEeeccc-cc----cccceEEccCC
Q 003325 266 SMEPNYVIPHWNLQIQSKLGSRCLVVLDDVWSL--AVLEQLIF---RV-PGCKTLVVSRFKF-ST----VLNDTYEVELL 334 (829)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~LlVlDdv~~~--~~~~~l~~---~~-~gs~iivTtR~~~-~~----~~~~~~~l~~L 334 (829)
. -.+++=++|+|+++.. .....+.. .- +.+.+|++|.... +. .....+++.++
T Consensus 86 ~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 86 F----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred c----------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 0 0246678888988754 33444443 23 3566665554332 22 34678999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 003325 335 REDESLSLFCYSAFGQKTIPPSANENLVKQIVKKCKGLPLALKV 378 (829)
Q Consensus 335 ~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 378 (829)
++++..+.+... + . .++.+..++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~--~---~----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK--N---K----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc--C---C----ChhHHHHHHHHcCCHHHHHHH
Confidence 999998777643 1 1 123466666666663345544
No 479
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.89 E-value=0.35 Score=53.16 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHhhccccc-----cccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCCC----CCCCC
Q 003325 203 DDLSVLGICGIGGSGKTTLA-LEVCRDHQVT-----SYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDSM----EPNYV 272 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~----~~~~~ 272 (829)
..-.-++|.|..|+|||+|| -.+.|...+. ++- ..++++-+++......-+.+.+++-+.-... ...+.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~-~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNA-VISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCC-CEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 45577899999999999998 5566543221 121 2455788877654322233333332211000 01111
Q ss_pred cch-----------hhHHHHhhcCCcEEEEEcCCCC
Q 003325 273 IPH-----------WNLQIQSKLGSRCLVVLDDVWS 297 (829)
Q Consensus 273 ~~~-----------~~~~~~~~~~~~~LlVlDdv~~ 297 (829)
... ....++ -+++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFr-d~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFM-NRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcCchH
Confidence 111 111122 268999999999974
No 480
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.89 E-value=0.17 Score=55.31 Aligned_cols=45 Identities=31% Similarity=0.267 Sum_probs=32.5
Q ss_pred ccccccchhhHHHHHHhhc-------C--------CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 183 LMGIGMALGKNKVKEMVIG-------R--------DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 183 ~~~vgr~~~~~~l~~~L~~-------~--------~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++|.+..++.+...+.. . -..+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4568888777766544421 0 0235689999999999999999984
No 481
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.88 E-value=0.22 Score=48.18 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=26.6
Q ss_pred cccccchhhHHHHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 184 MGIGMALGKNKVKEMVIGRDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 184 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|-+..+..+.-... +..-+.++|++|+|||++|+.+-.
T Consensus 4 dI~GQe~aKrAL~iAAa---G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA---GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CSSSTHHHHHHHHHHHH---CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHc---CCCCeEEECCCCCCHHHHHHHHHH
Confidence 34666555444444333 346889999999999999998863
No 482
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.88 E-value=0.53 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.++|+++|+.|+||||.+..++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999998885
No 483
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.86 E-value=0.68 Score=47.13 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHhhccccccccCCeEEEEEeCCC-CCHHHHHHHHHHhhcCCCC---CCCCCC--cch
Q 003325 203 DDLSVLGICGIGGSGKTTLA-LEVCRDHQVTSYFNNRILFLTVSQS-PNVEQLRAKVWGFVSGCDS---MEPNYV--IPH 275 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~---~~~~~~--~~~ 275 (829)
..-+-++|.|.+|+|||+|| ..+.+. . +-+..++++-+++. .++.++.+.+...=..... ....+. ..+
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 45578899999999999996 556542 1 22334346666654 4456666665532110000 001111 111
Q ss_pred h------hHHHHhh--cCCcEEEEEcCCCCh
Q 003325 276 W------NLQIQSK--LGSRCLVVLDDVWSL 298 (829)
Q Consensus 276 ~------~~~~~~~--~~~~~LlVlDdv~~~ 298 (829)
. ...-+.+ +++.+||++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 0 0111111 689999999999753
No 484
>PRK04182 cytidylate kinase; Provisional
Probab=91.83 E-value=0.13 Score=49.47 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999995
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.80 E-value=0.36 Score=52.62 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHHHHHhhcCCCC---CCCCCCcc--hh-
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAKVWGFVSGCDS---MEPNYVIP--HW- 276 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~--~~- 276 (829)
..-..++|.|..|+|||||++.++.... . +..++...-....++.++.+..+..-..... ....+... +.
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 4556899999999999999998885321 1 2233222223344555565554433111110 00111111 11
Q ss_pred -----hHHHHhh--cCCcEEEEEcCCCC
Q 003325 277 -----NLQIQSK--LGSRCLVVLDDVWS 297 (829)
Q Consensus 277 -----~~~~~~~--~~~~~LlVlDdv~~ 297 (829)
....+.. +++.+||++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1111222 68999999999864
No 486
>PRK15453 phosphoribulokinase; Provisional
Probab=91.80 E-value=0.15 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhh
Q 003325 204 DLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 204 ~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
...+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999883
No 487
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.79 E-value=0.12 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhc
Q 003325 206 SVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.-|+|+|++|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46899999999999999999975
No 488
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.79 E-value=0.26 Score=43.45 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.6
Q ss_pred cccchhhHHHHHHhh----c--CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 186 IGMALGKNKVKEMVI----G--RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 186 vgr~~~~~~l~~~L~----~--~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
+|-.-..+.+.+.+. . ++..-|++..|.+|+|||.+|+.+++.
T Consensus 28 ~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 28 FGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 444444444444442 2 256678999999999999988887754
No 489
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.77 E-value=0.2 Score=50.57 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccc-----cccccCCeEEEEEeCCCCCHHHHHHHHHH
Q 003325 207 VLGICGIGGSGKTTLALEVCRDHQ-----VTSYFNNRILFLTVSQSPNVEQLRAKVWG 259 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~~wv~v~~~~~~~~l~~~i~~ 259 (829)
+..|+|++|.||||++..+...-. ....-...++ ++......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il-~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKIL-VVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EE-EEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccce-eecCCchhHHHHHHHHHh
Confidence 789999999999987766663220 1133344553 444444445555555443
No 490
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=91.76 E-value=0.12 Score=47.26 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=30.1
Q ss_pred cccchhhHHHHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 186 IGMALGKNKVKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 186 vgr~~~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
||....+.++.+.+..- ..-..|.|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45555666666666432 45567899999999999999999863
No 491
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.74 E-value=0.24 Score=49.36 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=25.8
Q ss_pred HHHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhhc
Q 003325 193 NKVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCRD 228 (829)
Q Consensus 193 ~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 228 (829)
.++.+.+.. .....+|+|.|+||+||+||.-++...
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 344554443 356789999999999999999988853
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.72 E-value=0.14 Score=48.83 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 003325 207 VLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 207 vi~I~G~gGiGKTtLA~~v~~ 227 (829)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 493
>PRK14532 adenylate kinase; Provisional
Probab=91.71 E-value=0.13 Score=50.09 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 003325 208 LGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~ 227 (829)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999984
No 494
>PRK13768 GTPase; Provisional
Probab=91.68 E-value=0.14 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhh
Q 003325 205 LSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 205 ~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
..++.|.|+||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35789999999999999988874
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.67 E-value=0.15 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 003325 206 SVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 206 ~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999994
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.67 E-value=0.49 Score=47.44 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=37.1
Q ss_pred HHHHhhcC-CCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 195 VKEMVIGR-DDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 195 l~~~L~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+-++|.++ ..-+++.|.|.+|+|||++|..++.. ..+. ...++|++... ...++.+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~-~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ-GLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEECCC--CHHHHHHH
Confidence 44445332 35679999999999999999988842 2222 34566887765 34444444
No 497
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=91.67 E-value=0.12 Score=53.44 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=65.5
Q ss_pred HHHHhhcCCCceEEEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCC-CCCHHHHHHHHHHhhcCCCC---CCCC
Q 003325 195 VKEMVIGRDDLSVLGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQ-SPNVEQLRAKVWGFVSGCDS---MEPN 270 (829)
Q Consensus 195 l~~~L~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~---~~~~ 270 (829)
++++|..-..-.-|++.|-+|+|||-|.+++.+ .+........+|.-++. ...-.++..++...=..... ....
T Consensus 137 VIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~--Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQM 214 (468)
T COG0055 137 VIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQM 214 (468)
T ss_pred EEEEecccccCceeeeeccCCccceeeHHHHHH--HHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeec
Confidence 455555435567899999999999999999996 34445555555777764 35566777776654111100 0011
Q ss_pred CCcch-----------hhHHHHhhcCCcEEEEEcCCCCh----HhHHHhhhc
Q 003325 271 YVIPH-----------WNLQIQSKLGSRCLVVLDDVWSL----AVLEQLIFR 307 (829)
Q Consensus 271 ~~~~~-----------~~~~~~~~~~~~~LlVlDdv~~~----~~~~~l~~~ 307 (829)
++.+. .....+-..++.+|+++||+..- .....+...
T Consensus 215 NEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr 266 (468)
T COG0055 215 NEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR 266 (468)
T ss_pred CCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhcc
Confidence 11111 12223333588999999999743 334555543
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.67 E-value=0.33 Score=51.31 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=26.1
Q ss_pred HHHHHhhc-CCCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 194 KVKEMVIG-RDDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 194 ~l~~~L~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
.+.+.+.. .....+|+|.|++|+|||||+..+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34444432 35678999999999999999998874
No 499
>PLN02165 adenylate isopentenyltransferase
Probab=91.65 E-value=0.15 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhh
Q 003325 203 DDLSVLGICGIGGSGKTTLALEVCR 227 (829)
Q Consensus 203 ~~~~vi~I~G~gGiGKTtLA~~v~~ 227 (829)
....+|+|+|+.|+||||||..++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHH
Confidence 4456999999999999999999984
No 500
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.65 E-value=0.17 Score=49.09 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhccccccccCCeEEEEEeCCCCCHHHHHHH
Q 003325 208 LGICGIGGSGKTTLALEVCRDHQVTSYFNNRILFLTVSQSPNVEQLRAK 256 (829)
Q Consensus 208 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~~wv~v~~~~~~~~l~~~ 256 (829)
+.|.|++|+|||+||.++.... .+. ...+.|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~-~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG-LAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHC--CCcEEEEECCC--CHHHHHHH
Confidence 6789999999999999887432 222 33566887654 34444433
Done!