Query 003327
Match_columns 829
No_of_seqs 776 out of 4389
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 2.4E-56 8.3E-61 552.5 24.7 393 16-435 718-1128(1304)
2 4dg8_A PA1221; ANL superfamily 100.0 1.4E-53 4.8E-58 486.3 19.5 315 13-354 271-596 (620)
3 3rg2_A Enterobactin synthase c 100.0 1.3E-50 4.5E-55 464.5 24.0 307 14-353 298-615 (617)
4 1amu_A GRSA, gramicidin synthe 100.0 8.6E-42 3E-46 386.2 23.8 277 4-305 279-558 (563)
5 3ni2_A 4-coumarate:COA ligase; 100.0 9E-40 3.1E-44 368.7 24.4 238 14-273 293-534 (536)
6 3etc_A AMP-binding protein; ad 100.0 7.5E-40 2.6E-44 371.3 22.0 234 14-273 337-578 (580)
7 1pg4_A Acetyl-COA synthetase; 100.0 4.2E-39 1.4E-43 370.4 24.2 242 14-275 374-622 (652)
8 4fuq_A Malonyl COA synthetase; 100.0 2.9E-39 1E-43 361.1 21.9 232 14-273 264-499 (503)
9 3g7s_A Long-chain-fatty-acid-- 100.0 2.9E-39 9.9E-44 365.6 19.2 240 15-274 293-542 (549)
10 3e7w_A D-alanine--poly(phospho 100.0 1.4E-38 4.9E-43 356.9 22.3 244 14-274 256-503 (511)
11 3fce_A D-alanine--poly(phospho 100.0 2.2E-38 7.6E-43 355.7 21.6 245 14-275 257-505 (512)
12 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.8E-39 3.3E-43 360.2 17.7 235 14-276 294-533 (539)
13 3r44_A Fatty acyl COA syntheta 100.0 2.8E-38 9.4E-43 354.6 21.1 232 15-275 281-514 (517)
14 3nyq_A Malonyl-COA ligase; A/B 100.0 1.1E-38 3.8E-43 356.3 17.8 228 16-270 270-504 (505)
15 3c5e_A Acyl-coenzyme A synthet 100.0 3.8E-38 1.3E-42 356.9 21.3 234 14-273 318-561 (570)
16 2d1s_A Luciferase, luciferin 4 100.0 3.1E-38 1E-42 356.6 20.2 234 15-275 306-544 (548)
17 3l8c_A D-alanine--poly(phospho 100.0 2.4E-38 8.2E-43 356.5 17.8 246 14-275 260-513 (521)
18 4gr5_A Non-ribosomal peptide s 100.0 5.6E-39 1.9E-43 364.8 11.5 243 15-271 323-568 (570)
19 1t5h_X 4-chlorobenzoyl COA lig 100.0 9.1E-38 3.1E-42 349.7 21.1 227 14-272 268-502 (504)
20 1ry2_A Acetyl-coenzyme A synth 100.0 8.1E-38 2.8E-42 359.7 18.5 242 15-275 381-638 (663)
21 3ipl_A 2-succinylbenzoate--COA 100.0 7.3E-37 2.5E-41 342.6 20.8 223 18-273 274-496 (501)
22 2v7b_A Benzoate-coenzyme A lig 100.0 9.9E-37 3.4E-41 343.8 21.3 226 18-270 300-528 (529)
23 1v25_A Long-chain-fatty-acid-C 100.0 1E-37 3.4E-42 352.1 13.0 239 15-274 290-536 (541)
24 3ivr_A Putative long-chain-fat 100.0 6E-38 2E-42 351.9 8.3 230 13-274 267-501 (509)
25 3rix_A Luciferase, luciferin 4 100.0 9.9E-38 3.4E-42 353.2 9.2 234 14-274 303-541 (550)
26 3ite_A SIDN siderophore synthe 100.0 4.7E-37 1.6E-41 349.1 13.0 248 4-274 278-543 (562)
27 3o83_A Peptide arylation enzym 100.0 7.2E-38 2.5E-42 353.5 6.2 231 15-273 304-539 (544)
28 3tsy_A Fusion protein 4-coumar 100.0 5.8E-37 2E-41 370.3 10.7 241 14-276 340-584 (979)
29 3q7m_A Lipoprotein YFGL, BAMB; 100.0 3.4E-32 1.2E-36 293.7 40.1 319 460-821 26-376 (376)
30 3gqw_A Fatty acid AMP ligase; 100.0 2E-34 6.8E-39 329.6 11.8 242 13-276 294-565 (576)
31 3kxw_A Saframycin MX1 syntheta 100.0 5.4E-34 1.9E-38 326.6 11.4 250 13-274 284-567 (590)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.9E-33 1.3E-37 295.7 14.5 206 14-273 144-353 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 7.5E-30 2.6E-34 280.1 17.5 212 16-269 204-432 (436)
34 2ad6_A Methanol dehydrogenase 100.0 3E-27 1E-31 266.0 38.6 323 458-815 36-528 (571)
35 1flg_A Protein (quinoprotein e 100.0 2.8E-27 9.4E-32 266.2 38.0 325 457-814 39-549 (582)
36 1w6s_A Methanol dehydrogenase 100.0 5.6E-27 1.9E-31 262.5 38.9 325 457-814 35-536 (599)
37 2y4o_A Phenylacetate-coenzyme 100.0 1.3E-29 4.3E-34 278.9 16.4 215 17-270 211-440 (443)
38 3q7m_A Lipoprotein YFGL, BAMB; 100.0 5E-27 1.7E-31 253.2 34.7 286 504-828 26-342 (376)
39 3hxj_A Pyrrolo-quinoline quino 100.0 1.9E-28 6.5E-33 259.3 23.0 321 460-827 7-328 (330)
40 1yiq_A Quinohemoprotein alcoho 100.0 6.1E-27 2.1E-31 269.9 37.3 325 457-814 43-538 (689)
41 1kb0_A Quinohemoprotein alcoho 100.0 1.1E-26 3.7E-31 267.3 37.3 322 457-811 50-537 (677)
42 2y27_A Phenylacetate-coenzyme 100.0 5.9E-29 2E-33 273.0 13.1 213 17-269 209-434 (437)
43 1kv9_A Type II quinohemoprotei 99.9 2.8E-25 9.6E-30 255.4 35.2 323 457-814 39-521 (668)
44 1flg_A Protein (quinoprotein e 99.9 2.3E-23 8E-28 234.3 32.8 307 501-828 39-521 (582)
45 2ad6_A Methanol dehydrogenase 99.9 4.7E-23 1.6E-27 231.8 32.4 305 503-828 37-499 (571)
46 1w6s_A Methanol dehydrogenase 99.9 4.1E-23 1.4E-27 231.2 31.0 307 503-828 37-508 (599)
47 1kb0_A Quinohemoprotein alcoho 99.9 2.7E-23 9.1E-28 239.0 30.2 308 500-828 49-512 (677)
48 3hxj_A Pyrrolo-quinoline quino 99.9 3.1E-23 1E-27 219.2 24.2 275 462-769 49-323 (330)
49 1yiq_A Quinohemoprotein alcoho 99.9 2.1E-22 7.3E-27 232.0 29.8 304 504-828 46-510 (689)
50 1kv9_A Type II quinohemoprotei 99.9 2.5E-21 8.4E-26 222.6 30.1 305 503-828 41-493 (668)
51 2hz6_A Endoplasmic reticulum t 99.9 1.3E-24 4.6E-29 232.0 2.2 264 527-823 8-279 (369)
52 2hz6_A Endoplasmic reticulum t 99.9 9.8E-25 3.3E-29 233.0 -1.9 264 476-770 3-279 (369)
53 2ovr_B FBW7, F-BOX/WD repeat p 99.8 4.4E-17 1.5E-21 179.7 36.8 303 485-823 128-442 (445)
54 1r5m_A SIR4-interacting protei 99.8 4.4E-17 1.5E-21 178.2 36.4 320 485-822 56-424 (425)
55 3ow8_A WD repeat-containing pr 99.8 6.2E-17 2.1E-21 169.5 34.0 267 486-768 48-319 (321)
56 3no2_A Uncharacterized protein 99.8 4.4E-17 1.5E-21 165.8 30.1 237 485-730 4-265 (276)
57 3t5a_A Long-chain-fatty-acid-- 99.8 6.6E-20 2.2E-24 204.2 9.6 150 13-168 306-480 (480)
58 3v7d_B Cell division control p 99.8 2.5E-16 8.4E-21 174.7 38.1 268 485-771 131-422 (464)
59 1vyh_C Platelet-activating fac 99.8 7.2E-17 2.5E-21 175.5 31.6 271 483-768 117-409 (410)
60 1got_B GT-beta; complex (GTP-b 99.8 3.4E-16 1.2E-20 165.6 35.4 267 484-767 65-340 (340)
61 4ery_A WD repeat-containing pr 99.8 5.6E-16 1.9E-20 161.8 36.2 274 483-769 32-311 (312)
62 3vl1_A 26S proteasome regulato 99.8 5.1E-17 1.7E-21 177.6 27.6 318 485-823 67-419 (420)
63 2ynn_A Coatomer subunit beta'; 99.8 1.1E-15 3.9E-20 158.7 35.8 248 511-771 8-260 (304)
64 1vyh_C Platelet-activating fac 99.8 3.7E-16 1.3E-20 169.9 32.5 277 519-821 111-409 (410)
65 1gxr_A ESG1, transducin-like e 99.8 4.8E-16 1.7E-20 164.0 31.8 305 485-821 20-335 (337)
66 3odt_A Protein DOA1; ubiquitin 99.8 1.1E-15 3.8E-20 159.4 33.8 292 501-828 2-301 (313)
67 4ery_A WD repeat-containing pr 99.8 2.5E-15 8.7E-20 156.8 36.5 291 507-822 14-311 (312)
68 1gxr_A ESG1, transducin-like e 99.8 1.6E-15 5.5E-20 160.0 34.9 269 483-769 60-336 (337)
69 2ovr_B FBW7, F-BOX/WD repeat p 99.8 6.8E-16 2.3E-20 170.1 33.0 266 524-827 125-395 (445)
70 2ynn_A Coatomer subunit beta'; 99.8 3.1E-15 1.1E-19 155.4 35.3 242 483-728 22-270 (304)
71 1got_B GT-beta; complex (GTP-b 99.7 4.7E-15 1.6E-19 156.8 36.4 276 515-820 54-340 (340)
72 3ow8_A WD repeat-containing pr 99.7 2.4E-15 8.1E-20 157.5 33.4 266 527-821 47-319 (321)
73 2pbi_B Guanine nucleotide-bind 99.7 2.2E-15 7.4E-20 160.2 33.3 271 484-767 74-354 (354)
74 2be1_A Serine/threonine-protei 99.7 5.3E-17 1.8E-21 166.0 18.2 196 529-730 11-245 (339)
75 3frx_A Guanine nucleotide-bind 99.7 6.5E-15 2.2E-19 154.1 34.3 278 485-771 29-318 (319)
76 3zwl_B Eukaryotic translation 99.7 9.6E-15 3.3E-19 156.1 35.2 274 483-771 41-347 (369)
77 3zwl_B Eukaryotic translation 99.7 1.1E-14 3.6E-19 155.8 35.0 287 512-826 28-349 (369)
78 1l0q_A Surface layer protein; 99.7 4E-14 1.4E-18 152.9 39.5 264 488-771 4-276 (391)
79 1pgu_A Actin interacting prote 99.7 4.2E-15 1.4E-19 171.1 33.7 271 485-771 29-329 (615)
80 4a2l_A BT_4663, two-component 99.7 1.1E-15 3.6E-20 181.3 28.5 316 483-827 138-484 (795)
81 1p22_A F-BOX/WD-repeat protein 99.7 4.3E-15 1.5E-19 163.1 31.2 270 527-825 142-416 (435)
82 1p22_A F-BOX/WD-repeat protein 99.7 4E-15 1.4E-19 163.3 30.9 260 485-771 142-415 (435)
83 1erj_A Transcriptional repress 99.7 2.6E-14 8.8E-19 154.4 36.6 275 483-769 73-388 (393)
84 4aez_A CDC20, WD repeat-contai 99.7 8.2E-15 2.8E-19 158.9 32.5 268 486-771 103-381 (401)
85 2be1_A Serine/threonine-protei 99.7 1.1E-16 3.8E-21 163.6 16.5 227 486-717 10-297 (339)
86 4a2l_A BT_4663, two-component 99.7 3.2E-15 1.1E-19 177.1 31.6 321 483-826 180-529 (795)
87 3vgz_A Uncharacterized protein 99.7 4.9E-14 1.7E-18 149.7 37.6 240 483-729 49-315 (353)
88 4aez_A CDC20, WD repeat-contai 99.7 2E-14 6.8E-19 155.9 34.6 273 528-827 103-384 (401)
89 3v9f_A Two-component system se 99.7 5.4E-15 1.9E-19 174.8 32.7 315 482-827 121-482 (781)
90 3v7d_B Cell division control p 99.7 2.3E-14 7.8E-19 158.8 35.4 269 527-827 131-425 (464)
91 1r5m_A SIR4-interacting protei 99.7 4.2E-15 1.4E-19 162.4 29.0 269 482-769 116-424 (425)
92 3sfz_A APAF-1, apoptotic pepti 99.7 2.3E-14 7.8E-19 179.4 39.4 272 482-769 623-912 (1249)
93 3odt_A Protein DOA1; ubiquitin 99.7 2.7E-14 9.3E-19 148.8 33.6 263 485-771 28-297 (313)
94 3no2_A Uncharacterized protein 99.7 1.7E-15 5.8E-20 154.0 23.7 190 527-726 4-204 (276)
95 3v9f_A Two-component system se 99.7 3.5E-15 1.2E-19 176.4 29.7 309 482-827 217-572 (781)
96 3sfz_A APAF-1, apoptotic pepti 99.7 1.7E-14 5.6E-19 180.6 37.3 337 463-827 639-1078(1249)
97 1sq9_A Antiviral protein SKI8; 99.7 6.8E-15 2.3E-19 159.3 29.2 278 487-771 27-396 (397)
98 1pgu_A Actin interacting prote 99.7 2.3E-14 8E-19 164.9 34.8 304 488-824 175-573 (615)
99 3bws_A Protein LP49; two-domai 99.7 1.8E-14 6.2E-19 158.0 31.8 293 497-822 102-431 (433)
100 2ymu_A WD-40 repeat protein; u 99.7 6.4E-14 2.2E-18 159.9 37.4 303 483-820 271-577 (577)
101 4gqb_B Methylosome protein 50; 99.7 1.7E-14 6E-19 152.1 29.6 237 520-771 86-332 (344)
102 2pbi_B Guanine nucleotide-bind 99.7 7.2E-14 2.5E-18 148.4 34.5 283 512-820 60-354 (354)
103 4aow_A Guanine nucleotide-bind 99.7 1.1E-13 3.7E-18 146.2 35.8 280 485-771 50-338 (340)
104 3frx_A Guanine nucleotide-bind 99.7 1E-13 3.5E-18 145.0 35.0 284 511-825 12-319 (319)
105 3k26_A Polycomb protein EED; W 99.7 2E-14 6.8E-19 153.5 29.2 269 485-769 33-365 (366)
106 3vl1_A 26S proteasome regulato 99.7 2.2E-14 7.4E-19 156.7 29.7 232 482-718 105-366 (420)
107 3bws_A Protein LP49; two-domai 99.7 5.8E-14 2E-18 154.0 32.6 265 486-769 133-431 (433)
108 4a11_B DNA excision repair pro 99.7 4.3E-14 1.5E-18 153.4 31.2 274 485-771 55-366 (408)
109 3iz6_a 40S ribosomal protein R 99.7 3.1E-14 1.1E-18 153.0 29.7 301 502-825 52-377 (380)
110 2pm9_A Protein WEB1, protein t 99.7 4.3E-15 1.5E-19 162.0 23.2 271 487-772 26-339 (416)
111 2xzm_R RACK1; ribosome, transl 99.7 1.3E-13 4.6E-18 145.8 34.0 280 485-771 38-341 (343)
112 1nr0_A Actin interacting prote 99.7 1.2E-13 4.1E-18 158.4 36.0 316 482-825 67-399 (611)
113 3iz6_a 40S ribosomal protein R 99.7 1.7E-14 5.7E-19 155.1 27.1 275 484-771 76-376 (380)
114 3mkq_A Coatomer beta'-subunit; 99.7 1.4E-13 4.9E-18 164.1 38.0 243 483-729 22-271 (814)
115 2ymu_A WD-40 repeat protein; u 99.7 3.2E-13 1.1E-17 154.1 38.2 307 483-825 230-540 (577)
116 1erj_A Transcriptional repress 99.7 3E-13 1E-17 146.0 35.8 279 515-824 63-390 (393)
117 4aow_A Guanine nucleotide-bind 99.7 8.9E-14 3.1E-18 146.8 31.0 301 504-825 26-339 (340)
118 1nr0_A Actin interacting prote 99.7 2.4E-13 8.3E-18 155.9 37.0 312 485-826 29-358 (611)
119 1sq9_A Antiviral protein SKI8; 99.6 6.3E-14 2.2E-18 151.6 29.7 276 520-825 20-397 (397)
120 1nir_A Nitrite reductase; hemo 99.6 3.6E-13 1.2E-17 150.9 36.6 320 488-827 151-518 (543)
121 3dm0_A Maltose-binding peripla 99.6 1.8E-13 6.3E-18 159.6 34.4 279 485-769 394-692 (694)
122 4g56_B MGC81050 protein; prote 99.6 4.5E-14 1.5E-18 150.2 26.7 274 482-770 50-343 (357)
123 3mkq_A Coatomer beta'-subunit; 99.6 1.8E-13 6.3E-18 163.2 35.0 247 512-771 9-260 (814)
124 1k8k_C P40, ARP2/3 complex 41 99.6 7.7E-14 2.6E-18 149.4 28.6 231 484-717 18-274 (372)
125 4gqb_B Methylosome protein 50; 99.6 1.2E-13 4.2E-18 145.6 26.9 232 486-720 93-334 (344)
126 1l0q_A Surface layer protein; 99.6 3.3E-13 1.1E-17 145.7 30.8 264 530-827 4-279 (391)
127 3ei3_B DNA damage-binding prot 99.6 3.5E-13 1.2E-17 145.0 30.6 267 487-769 87-381 (383)
128 4gga_A P55CDC, cell division c 99.6 4E-13 1.4E-17 146.5 31.3 267 486-770 116-395 (420)
129 4g56_B MGC81050 protein; prote 99.6 1.3E-13 4.4E-18 146.6 26.2 279 515-823 41-343 (357)
130 2xzm_R RACK1; ribosome, transl 99.6 1.2E-12 4.3E-17 138.3 33.4 280 527-825 38-342 (343)
131 1k8k_C P40, ARP2/3 complex 41 99.6 7.2E-13 2.4E-17 141.8 31.8 240 515-770 7-274 (372)
132 1pby_B Quinohemoprotein amine 99.6 4.8E-13 1.6E-17 140.9 29.5 261 487-771 2-311 (337)
133 3vgz_A Uncharacterized protein 99.6 1.9E-12 6.5E-17 137.4 33.3 246 509-771 34-304 (353)
134 3k26_A Polycomb protein EED; W 99.6 6.9E-13 2.4E-17 141.5 29.5 279 519-823 21-366 (366)
135 3tej_A Enterobactin synthase c 99.6 5.6E-16 1.9E-20 162.4 5.1 151 284-435 6-182 (329)
136 4ggc_A P55CDC, cell division c 99.6 2.2E-12 7.4E-17 134.7 32.3 265 486-769 36-314 (318)
137 4gga_A P55CDC, cell division c 99.6 3.1E-12 1.1E-16 139.5 34.6 266 529-824 117-396 (420)
138 3i2n_A WD repeat-containing pr 99.6 2E-13 6.7E-18 145.2 24.2 266 487-770 32-353 (357)
139 3ei3_B DNA damage-binding prot 99.6 2.1E-12 7E-17 139.0 31.4 284 519-823 76-382 (383)
140 4a11_B DNA excision repair pro 99.6 4E-13 1.4E-17 145.7 26.0 290 513-826 40-368 (408)
141 3lax_A Phenylacetate-coenzyme 99.6 6.6E-15 2.3E-19 125.5 9.1 100 167-270 1-107 (109)
142 3i2n_A WD repeat-containing pr 99.6 1E-12 3.5E-17 139.6 28.4 296 515-825 17-355 (357)
143 2hes_X YDR267CP; beta-propelle 99.5 4.5E-12 1.5E-16 133.1 31.5 269 488-769 26-327 (330)
144 3fm0_A Protein CIAO1; WDR39,SG 99.5 7.2E-12 2.4E-16 132.5 32.9 273 483-771 25-336 (345)
145 2pm9_A Protein WEB1, protein t 99.5 1.6E-13 5.4E-18 149.5 19.9 235 483-720 76-340 (416)
146 3gre_A Serine/threonine-protei 99.5 1.4E-12 4.9E-17 143.0 27.5 268 501-772 48-361 (437)
147 3ott_A Two-component system se 99.5 2.1E-12 7.1E-17 152.1 30.6 314 482-827 69-405 (758)
148 3gre_A Serine/threonine-protei 99.5 9.6E-13 3.3E-17 144.4 25.9 238 485-725 75-367 (437)
149 3dm0_A Maltose-binding peripla 99.5 8.3E-12 2.8E-16 145.6 33.5 285 520-822 386-692 (694)
150 2hes_X YDR267CP; beta-propelle 99.5 3.3E-11 1.1E-15 126.4 34.4 292 507-824 5-329 (330)
151 3ott_A Two-component system se 99.5 2.8E-12 9.6E-17 151.0 28.9 301 480-824 26-353 (758)
152 4ggc_A P55CDC, cell division c 99.5 5.4E-11 1.8E-15 123.9 34.9 271 523-824 32-316 (318)
153 3u4y_A Uncharacterized protein 99.5 3.1E-11 1E-15 126.8 33.0 277 485-771 8-305 (331)
154 1yfq_A Cell cycle arrest prote 99.5 4.9E-12 1.7E-16 133.5 26.7 257 485-762 22-315 (342)
155 3mmy_A MRNA export factor; mRN 99.5 2.7E-12 9.3E-17 136.9 24.6 286 512-816 35-339 (368)
156 2vdu_B TRNA (guanine-N(7)-)-me 99.5 2.4E-11 8.1E-16 133.7 32.6 289 521-826 9-396 (450)
157 3dw8_B Serine/threonine-protei 99.5 9E-12 3.1E-16 137.0 29.2 237 482-722 36-378 (447)
158 3mmy_A MRNA export factor; mRN 99.5 1.2E-11 4.2E-16 131.8 28.5 256 486-761 54-337 (368)
159 2aq5_A Coronin-1A; WD40 repeat 99.5 4E-12 1.4E-16 137.7 24.9 226 489-719 50-301 (402)
160 3gxs_A Phenylacetate-coenzyme 99.5 1.1E-13 3.9E-18 117.4 9.9 95 167-266 1-102 (109)
161 3fm0_A Protein CIAO1; WDR39,SG 99.5 2E-11 6.7E-16 129.1 29.5 289 519-826 19-338 (345)
162 3dsm_A Uncharacterized protein 99.5 1.3E-11 4.3E-16 129.3 27.6 228 485-727 52-311 (328)
163 3jrp_A Fusion protein of prote 99.5 7.4E-12 2.5E-16 134.1 26.4 247 512-771 7-288 (379)
164 1pby_B Quinohemoprotein amine 99.5 3E-11 1E-15 127.1 28.7 264 529-827 2-314 (337)
165 4e54_B DNA damage-binding prot 99.5 5.1E-12 1.7E-16 138.4 23.5 274 485-771 131-431 (435)
166 4e54_B DNA damage-binding prot 99.4 1.3E-11 4.4E-16 135.2 26.3 284 520-827 123-434 (435)
167 2vdu_B TRNA (guanine-N(7)-)-me 99.4 2.5E-11 8.5E-16 133.6 28.7 206 519-727 105-354 (450)
168 3dwl_C Actin-related protein 2 99.4 1.2E-12 4.2E-17 140.3 17.7 229 485-717 22-281 (377)
169 1yfq_A Cell cycle arrest prote 99.4 3.4E-11 1.2E-15 127.0 27.8 276 518-815 13-315 (342)
170 3dw8_B Serine/threonine-protei 99.4 5.2E-11 1.8E-15 130.9 29.9 248 518-772 30-375 (447)
171 2oaj_A Protein SNI1; WD40 repe 99.4 1.4E-10 4.9E-15 138.1 35.4 193 482-680 25-248 (902)
172 3dwl_C Actin-related protein 2 99.4 2E-12 7E-17 138.7 17.4 234 519-769 14-280 (377)
173 3dsm_A Uncharacterized protein 99.4 6.8E-11 2.3E-15 123.7 27.9 258 534-827 13-305 (328)
174 2aq5_A Coronin-1A; WD40 repeat 99.4 9E-12 3.1E-16 134.9 21.7 222 533-771 52-300 (402)
175 3lrv_A PRE-mRNA-splicing facto 99.4 2.9E-11 9.9E-16 127.7 24.8 264 485-768 47-331 (343)
176 3f3f_A Nucleoporin SEH1; struc 99.4 6.5E-11 2.2E-15 124.9 27.2 199 515-718 10-250 (351)
177 3u4y_A Uncharacterized protein 99.4 2.7E-10 9.2E-15 119.5 31.6 275 522-826 3-307 (331)
178 3sjl_D Methylamine dehydrogena 99.4 2.5E-10 8.6E-15 119.1 30.4 269 485-771 43-364 (386)
179 3vu4_A KMHSV2; beta-propeller 99.4 9.1E-11 3.1E-15 124.4 27.6 294 504-825 7-338 (355)
180 2cq8_A 10-formyltetrahydrofola 99.4 2.2E-13 7.5E-18 112.0 5.2 70 284-353 20-97 (110)
181 1nir_A Nitrite reductase; hemo 99.4 4.2E-10 1.4E-14 126.0 33.5 273 482-771 186-515 (543)
182 1qks_A Cytochrome CD1 nitrite 99.4 1.7E-09 5.9E-14 120.6 37.7 323 486-827 166-542 (567)
183 3jrp_A Fusion protein of prote 99.4 8.7E-11 3E-15 125.7 25.8 234 484-719 21-289 (379)
184 3f3f_A Nucleoporin SEH1; struc 99.4 1.7E-10 5.8E-15 121.6 27.4 190 484-675 21-250 (351)
185 1jmx_B Amine dehydrogenase; ox 99.4 3.2E-10 1.1E-14 119.8 29.1 266 486-771 11-326 (349)
186 2oaj_A Protein SNI1; WD40 repe 99.4 5.5E-10 1.9E-14 133.1 34.3 327 486-825 69-521 (902)
187 4i4d_A Peptide synthetase NRPS 99.3 8.7E-13 3E-17 108.2 5.9 70 285-354 12-87 (93)
188 2pm7_B Protein transport prote 99.3 2.6E-10 9E-15 117.6 26.0 240 518-769 11-284 (297)
189 1dny_A Non-ribosomal peptide s 99.3 1.2E-12 4.1E-17 106.5 6.3 70 284-353 9-84 (91)
190 3lrv_A PRE-mRNA-splicing facto 99.3 1.8E-10 6E-15 121.7 24.8 224 526-771 46-293 (343)
191 3sjl_D Methylamine dehydrogena 99.3 6.4E-10 2.2E-14 116.1 26.8 283 522-827 38-367 (386)
192 3vu4_A KMHSV2; beta-propeller 99.3 8.2E-10 2.8E-14 117.0 28.2 274 482-771 27-337 (355)
193 3jro_A Fusion protein of prote 99.3 5.6E-11 1.9E-15 139.5 20.8 243 517-771 10-286 (753)
194 2z2n_A Virginiamycin B lyase; 99.3 3.1E-09 1.1E-13 109.4 30.7 268 521-827 19-299 (299)
195 3c75_H MADH, methylamine dehyd 99.3 2.3E-09 8E-14 114.1 30.1 268 485-771 83-403 (426)
196 2xyi_A Probable histone-bindin 99.3 6.6E-10 2.3E-14 121.3 26.8 239 520-771 132-411 (430)
197 2mad_H Methylamine dehydrogena 99.3 8.8E-09 3E-13 109.2 33.4 265 485-771 31-351 (373)
198 2z2n_A Virginiamycin B lyase; 99.3 5.8E-09 2E-13 107.3 31.3 268 478-771 17-296 (299)
199 2pm7_B Protein transport prote 99.2 1.9E-09 6.5E-14 111.0 26.5 229 483-716 18-284 (297)
200 3jro_A Fusion protein of prote 99.2 2.1E-10 7.1E-15 134.7 21.2 231 485-718 20-286 (753)
201 3hgu_A EHPF; phenazine, antibi 99.2 9.6E-12 3.3E-16 132.6 7.7 120 16-178 229-368 (369)
202 1jmx_B Amine dehydrogenase; ox 99.2 2E-09 7E-14 113.5 25.6 272 523-827 6-329 (349)
203 3bg1_A Protein SEC13 homolog; 99.2 1.3E-09 4.4E-14 113.5 23.2 238 517-769 14-292 (316)
204 1q7f_A NHL, brain tumor CG1071 99.2 6.4E-09 2.2E-13 106.4 27.6 231 478-717 32-280 (286)
205 2j04_B YDR362CP, TAU91; beta p 99.2 4E-10 1.4E-14 125.1 19.8 184 486-672 225-425 (524)
206 2qc5_A Streptogramin B lactona 99.2 2.4E-08 8E-13 102.8 31.6 263 477-769 21-299 (300)
207 2xyi_A Probable histone-bindin 99.2 1.6E-09 5.4E-14 118.3 23.6 231 486-718 141-411 (430)
208 2oiz_A Aromatic amine dehydrog 99.2 1.8E-08 6.3E-13 106.6 30.9 265 486-771 15-335 (361)
209 4h5i_A Guanine nucleotide-exch 99.2 4.8E-08 1.6E-12 103.7 34.2 269 484-771 24-344 (365)
210 3bg1_A Protein SEC13 homolog; 99.2 5.2E-09 1.8E-13 108.9 25.9 230 485-716 24-292 (316)
211 2hqs_A Protein TOLB; TOLB, PAL 99.2 1E-08 3.4E-13 111.0 28.1 255 497-771 94-388 (415)
212 4f6l_B AUSA reductase domain p 99.2 3.1E-12 1.1E-16 142.4 0.0 100 255-354 4-115 (508)
213 3c75_H MADH, methylamine dehyd 99.2 8.3E-09 2.8E-13 109.8 26.1 277 526-827 82-406 (426)
214 1ri6_A Putative isomerase YBHE 99.1 5.4E-08 1.9E-12 102.1 31.9 268 486-769 4-307 (343)
215 3e5z_A Putative gluconolactona 99.1 2E-08 6.7E-13 103.4 27.5 229 520-772 31-288 (296)
216 2j04_B YDR362CP, TAU91; beta p 99.1 3.5E-09 1.2E-13 117.5 22.5 226 488-718 175-429 (524)
217 2mad_H Methylamine dehydrogena 99.1 1E-07 3.4E-12 101.0 32.3 276 526-827 30-354 (373)
218 3e5z_A Putative gluconolactona 99.1 1.4E-08 4.9E-13 104.3 25.0 223 488-721 42-290 (296)
219 2ecf_A Dipeptidyl peptidase IV 99.1 3.4E-08 1.2E-12 116.1 31.4 228 483-717 45-369 (741)
220 1q7f_A NHL, brain tumor CG1071 99.1 2.4E-08 8.2E-13 102.1 26.3 228 521-769 34-279 (286)
221 2oiz_A Aromatic amine dehydrog 99.1 6.8E-08 2.3E-12 102.2 29.7 268 527-824 14-335 (361)
222 2hqs_A Protein TOLB; TOLB, PAL 99.1 3E-08 1E-12 107.3 27.4 214 496-719 159-389 (415)
223 4h5i_A Guanine nucleotide-exch 99.1 2.3E-08 8E-13 106.1 25.6 187 482-672 141-340 (365)
224 2qc5_A Streptogramin B lactona 99.1 6.6E-08 2.3E-12 99.4 28.2 261 522-822 25-299 (300)
225 2w18_A PALB2, fancn, partner a 99.1 1.8E-08 6.1E-13 102.3 22.8 185 486-672 144-354 (356)
226 1ri6_A Putative isomerase YBHE 99.1 1.8E-07 6E-12 98.2 31.2 276 529-826 5-313 (343)
227 2w18_A PALB2, fancn, partner a 99.0 7.6E-08 2.6E-12 97.7 25.7 182 570-768 144-355 (356)
228 3hfq_A Uncharacterized protein 99.0 2.7E-07 9.2E-12 97.2 30.7 269 487-769 3-316 (347)
229 2z3z_A Dipeptidyl aminopeptida 99.0 6.8E-08 2.3E-12 112.8 28.1 180 489-676 38-295 (706)
230 2dg1_A DRP35, lactonase; beta 99.0 1.3E-07 4.3E-12 99.1 26.1 232 520-769 48-315 (333)
231 3pe7_A Oligogalacturonate lyas 99.0 4.6E-07 1.6E-11 97.0 31.1 218 501-722 15-278 (388)
232 3hfq_A Uncharacterized protein 99.0 2.2E-07 7.4E-12 97.9 27.4 276 530-827 4-323 (347)
233 4gq1_A NUP37; propeller, trans 98.9 1E-07 3.5E-12 102.3 24.5 146 486-631 101-286 (393)
234 3scy_A Hypothetical bacterial 98.9 1.6E-06 5.5E-11 91.7 32.9 270 486-769 13-336 (361)
235 1jof_A Carboxy-CIS,CIS-muconat 98.9 1E-06 3.5E-11 93.4 31.2 272 487-771 3-342 (365)
236 2z3z_A Dipeptidyl aminopeptida 98.9 2.8E-07 9.5E-12 107.6 29.2 266 487-771 93-436 (706)
237 2ojh_A Uncharacterized protein 98.9 6.1E-07 2.1E-11 91.5 28.2 223 493-721 19-262 (297)
238 2ecf_A Dipeptidyl peptidase IV 98.9 3.2E-07 1.1E-11 107.7 28.8 232 519-768 39-365 (741)
239 1k32_A Tricorn protease; prote 98.9 1.1E-06 3.9E-11 107.1 33.5 103 488-593 26-147 (1045)
240 3pe7_A Oligogalacturonate lyas 98.9 9.6E-07 3.3E-11 94.5 28.8 232 485-721 46-333 (388)
241 1qks_A Cytochrome CD1 nitrite 98.9 5.1E-06 1.7E-10 92.6 35.1 289 463-771 188-539 (567)
242 1xfd_A DIP, dipeptidyl aminope 98.9 9.6E-08 3.3E-12 111.9 21.7 185 492-680 33-295 (723)
243 2afd_A Protein ASL1650; twiste 98.8 4.3E-09 1.5E-13 85.5 7.1 69 285-353 10-86 (88)
244 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 3.3E-07 1.1E-11 94.9 23.3 228 521-770 22-299 (314)
245 2j04_A TAU60, YPL007P, hypothe 98.8 8.9E-08 3E-12 103.9 18.8 245 485-768 26-295 (588)
246 2dg1_A DRP35, lactonase; beta 98.8 2E-06 6.7E-11 89.9 28.8 224 485-715 54-314 (333)
247 3c5m_A Oligogalacturonate lyas 98.8 3.5E-07 1.2E-11 98.2 23.6 218 499-722 13-278 (396)
248 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 4.2E-07 1.4E-11 94.0 23.4 222 485-717 27-299 (314)
249 1rwi_B Serine/threonine-protei 98.8 3.2E-07 1.1E-11 92.6 21.6 233 477-719 25-266 (270)
250 1k32_A Tricorn protease; prote 98.8 6.3E-07 2.1E-11 109.3 27.3 221 485-716 255-501 (1045)
251 3fvz_A Peptidyl-glycine alpha- 98.8 1.7E-06 5.7E-11 90.2 27.0 213 497-716 70-321 (329)
252 3scy_A Hypothetical bacterial 98.8 5.3E-06 1.8E-10 87.7 30.8 275 529-827 14-343 (361)
253 2iwa_A Glutamine cyclotransfer 98.8 8.1E-07 2.8E-11 87.6 22.1 179 486-672 31-234 (266)
254 2ju1_A Erythronolide synthase; 98.8 5.4E-09 1.8E-13 86.2 5.3 68 286-353 17-93 (95)
255 3dr2_A Exported gluconolactona 98.8 1.2E-06 4.3E-11 90.1 24.4 214 487-715 58-304 (305)
256 3o4h_A Acylamino-acid-releasin 98.8 9.7E-07 3.3E-11 100.3 25.2 225 485-721 32-278 (582)
257 3dr2_A Exported gluconolactona 98.8 1.6E-06 5.4E-11 89.4 24.4 223 521-768 49-304 (305)
258 1mda_H Methylamine dehydrogena 98.7 9.9E-07 3.4E-11 92.2 22.8 260 486-771 31-347 (368)
259 3nol_A Glutamine cyclotransfer 98.7 9.5E-07 3.2E-11 85.8 20.8 170 486-663 52-243 (262)
260 2kr5_A PKS, aflatoxin biosynth 98.7 1.3E-08 4.3E-13 82.8 6.4 69 285-353 7-85 (89)
261 3g4e_A Regucalcin; six bladed 98.7 5.4E-06 1.8E-10 84.9 27.5 193 485-684 24-239 (297)
262 2liu_A CURA; holo state, trans 98.7 1.4E-08 4.6E-13 84.6 6.3 69 286-354 18-94 (99)
263 2ghs_A AGR_C_1268P; regucalcin 98.7 7.2E-06 2.5E-10 85.2 28.4 191 485-684 60-269 (326)
264 3g4e_A Regucalcin; six bladed 98.7 2.8E-06 9.6E-11 87.1 24.9 199 521-728 17-240 (297)
265 3o4h_A Acylamino-acid-releasin 98.7 4.7E-06 1.6E-10 94.6 28.8 233 520-768 25-274 (582)
266 2fp8_A Strictosidine synthase; 98.7 4.9E-06 1.7E-10 86.4 26.6 228 485-716 28-312 (322)
267 3mbr_X Glutamine cyclotransfer 98.7 2.7E-06 9.2E-11 82.0 22.0 151 486-642 30-188 (243)
268 3fvz_A Peptidyl-glycine alpha- 98.7 2.1E-06 7.2E-11 89.5 23.4 218 537-770 68-322 (329)
269 3hrp_A Uncharacterized protein 98.7 8.3E-06 2.8E-10 87.5 28.0 196 477-678 132-358 (409)
270 3c5m_A Oligogalacturonate lyas 98.7 2.8E-06 9.5E-11 91.1 24.4 218 496-721 60-333 (396)
271 2jgp_A Tyrocidine synthetase 3 98.7 1.6E-08 5.6E-13 113.1 6.8 71 284-354 5-81 (520)
272 4gq1_A NUP37; propeller, trans 98.6 6.8E-07 2.3E-11 95.9 18.6 184 485-671 155-385 (393)
273 2iwa_A Glutamine cyclotransfer 98.6 7.8E-06 2.7E-10 80.5 24.4 216 548-771 9-238 (266)
274 3nol_A Glutamine cyclotransfer 98.6 5.2E-06 1.8E-10 80.6 22.7 170 550-728 33-212 (262)
275 3nok_A Glutaminyl cyclase; bet 98.6 1.9E-06 6.5E-11 83.6 19.1 148 486-642 64-219 (268)
276 1jof_A Carboxy-CIS,CIS-muconat 98.6 8.9E-06 3E-10 86.1 26.0 234 482-718 47-342 (365)
277 1rwi_B Serine/threonine-protei 98.6 2E-06 6.7E-11 86.7 19.8 189 521-719 28-224 (270)
278 2ojh_A Uncharacterized protein 98.6 6.9E-06 2.3E-10 83.6 24.2 216 535-771 19-259 (297)
279 3mbr_X Glutamine cyclotransfer 98.6 1.4E-05 4.8E-10 77.0 24.3 169 550-727 11-189 (243)
280 2vz8_A Fatty acid synthase; tr 98.6 5.1E-09 1.7E-13 135.0 0.0 150 290-442 2124-2326(2512)
281 3hrp_A Uncharacterized protein 98.6 2.3E-05 7.9E-10 84.0 28.7 197 521-722 135-359 (409)
282 2ghs_A AGR_C_1268P; regucalcin 98.6 1.3E-05 4.4E-10 83.3 25.8 195 521-728 53-270 (326)
283 1mda_H Methylamine dehydrogena 98.6 2.2E-06 7.4E-11 89.7 19.6 238 478-729 68-358 (368)
284 2fp8_A Strictosidine synthase; 98.6 8.7E-06 3E-10 84.5 24.1 230 521-769 23-312 (322)
285 1xfd_A DIP, dipeptidyl aminope 98.6 2.9E-06 1E-10 99.2 22.2 197 521-724 21-296 (723)
286 2xdw_A Prolyl endopeptidase; a 98.6 4.9E-05 1.7E-09 88.4 32.3 259 497-771 99-415 (710)
287 2j04_A TAU60, YPL007P, hypothe 98.5 4.3E-06 1.5E-10 90.8 20.1 175 482-667 93-290 (588)
288 3nok_A Glutaminyl cyclase; bet 98.5 6.5E-06 2.2E-10 79.9 19.1 169 549-727 44-220 (268)
289 1npe_A Nidogen, entactin; glyc 98.5 0.00014 4.7E-09 73.0 29.4 232 488-726 3-247 (267)
290 2hfk_A Pikromycin, type I poly 98.5 5.1E-09 1.7E-13 108.9 -4.1 125 283-435 22-177 (319)
291 2l22_A Mupirocin didomain acyl 98.5 1.7E-07 5.8E-12 90.2 6.7 89 255-355 4-100 (212)
292 1l0i_A Acyl carrier protein; a 98.4 1.9E-07 6.3E-12 73.5 5.4 65 289-353 3-76 (78)
293 4a5s_A Dipeptidyl peptidase 4 98.4 5.4E-05 1.9E-09 88.4 28.7 105 486-594 28-146 (740)
294 1z68_A Fibroblast activation p 98.4 3.5E-06 1.2E-10 98.5 18.3 132 488-621 28-189 (719)
295 2ava_A ACP I, acyl carrier pro 98.4 1.7E-07 6E-12 74.5 4.8 67 288-354 3-78 (82)
296 3azo_A Aminopeptidase; POP fam 98.4 6.9E-05 2.4E-09 86.4 28.5 226 489-721 95-373 (662)
297 2lol_A ACP, acyl carrier prote 98.4 4.5E-07 1.5E-11 71.9 6.2 67 287-353 4-79 (81)
298 2xdw_A Prolyl endopeptidase; a 98.4 4.9E-05 1.7E-09 88.4 26.1 217 497-719 152-416 (710)
299 2ehs_A ACP, acyl carrier prote 98.4 3.2E-07 1.1E-11 72.0 5.2 65 290-354 2-75 (77)
300 2cnr_A FAS, ACP, acyl carrier 98.4 5.4E-07 1.9E-11 71.7 6.4 67 287-353 5-80 (82)
301 2gop_A Trilobed protease; beta 98.4 0.00028 9.5E-09 73.7 29.1 204 495-721 42-295 (347)
302 2bkl_A Prolyl endopeptidase; m 98.4 7.4E-05 2.5E-09 86.6 26.6 155 561-719 123-306 (695)
303 3azo_A Aminopeptidase; POP fam 98.3 0.00017 5.8E-09 83.1 29.6 150 526-678 88-278 (662)
304 1z68_A Fibroblast activation p 98.3 6.3E-06 2.2E-10 96.2 16.5 140 521-665 20-189 (719)
305 2bkl_A Prolyl endopeptidase; m 98.3 0.0001 3.5E-09 85.4 26.5 185 485-676 78-306 (695)
306 2l22_A Mupirocin didomain acyl 98.3 8E-07 2.7E-11 85.5 7.0 69 286-354 127-203 (212)
307 1x3o_A Acyl carrier protein; s 98.3 7E-07 2.4E-11 70.6 5.3 66 288-353 4-78 (80)
308 4a5s_A Dipeptidyl peptidase 4 98.3 7.4E-05 2.5E-09 87.3 24.6 107 521-631 21-141 (740)
309 2dnw_A Acyl carrier protein; A 98.2 1.6E-06 5.5E-11 71.5 6.7 70 286-355 12-90 (99)
310 2kjs_A Putative acyl carrier p 98.2 1.5E-06 5.1E-11 69.0 5.8 64 291-354 4-76 (87)
311 1ijq_A LDL receptor, low-densi 98.2 0.0011 3.8E-08 68.1 28.9 230 489-724 4-245 (316)
312 2gop_A Trilobed protease; beta 98.2 0.0006 2E-08 71.2 26.8 128 537-677 42-210 (347)
313 1yr2_A Prolyl oligopeptidase; 98.2 0.0009 3.1E-08 78.0 30.8 153 518-675 164-351 (741)
314 2oit_A Nucleoporin 214KDA; NH2 98.2 0.00032 1.1E-08 75.9 24.8 114 483-597 101-230 (434)
315 3gzm_A Acyl carrier protein; h 98.1 2.1E-06 7.2E-11 67.8 5.1 68 287-354 3-79 (81)
316 1or5_A Acyl carrier protein; A 98.1 1.3E-06 4.5E-11 69.5 3.3 65 290-354 5-80 (83)
317 1npe_A Nidogen, entactin; glyc 98.1 0.0022 7.5E-08 64.0 27.9 194 485-683 46-247 (267)
318 1f80_D Acyl carrier protein; t 98.1 1.8E-06 6.3E-11 68.3 3.8 66 287-352 5-79 (81)
319 2ece_A 462AA long hypothetical 98.1 0.0026 9E-08 66.8 28.4 196 485-684 94-365 (462)
320 2qnw_A Acyl carrier protein; m 98.1 4E-06 1.4E-10 66.5 5.4 67 287-353 5-80 (82)
321 1nq4_A Oxytetracycline polyket 98.1 2.9E-06 1E-10 69.1 4.5 64 291-354 6-81 (95)
322 1yr2_A Prolyl oligopeptidase; 98.1 0.0014 4.9E-08 76.3 29.3 153 561-718 165-351 (741)
323 3iuj_A Prolyl endopeptidase; h 98.0 0.00087 3E-08 77.4 26.2 217 496-721 155-409 (693)
324 1klp_A ACP, ACPM, meromycolate 98.0 8.2E-06 2.8E-10 69.3 6.7 69 287-355 5-82 (115)
325 2l3v_A ACP, acyl carrier prote 98.0 3.9E-07 1.3E-11 71.9 -2.0 66 288-353 3-77 (79)
326 2p4o_A Hypothetical protein; p 98.0 0.0027 9.1E-08 64.9 26.3 184 485-677 41-244 (306)
327 2p4o_A Hypothetical protein; p 98.0 0.0022 7.5E-08 65.5 25.2 190 521-721 36-245 (306)
328 2qe8_A Uncharacterized protein 98.0 0.00031 1E-08 73.4 18.8 218 484-721 25-282 (343)
329 2jq4_A AGR_C_4658P, hypothetic 97.9 7.9E-06 2.7E-10 67.7 4.8 70 285-354 18-99 (105)
330 2oit_A Nucleoporin 214KDA; NH2 97.9 0.00014 4.8E-09 78.7 16.2 146 483-630 45-222 (434)
331 3ejb_A Acyl carrier protein; p 97.9 7.5E-06 2.5E-10 66.9 4.5 68 286-353 19-95 (97)
332 2px6_A Thioesterase domain; th 97.9 8.2E-07 2.8E-11 91.9 -1.6 100 317-435 1-121 (316)
333 4hw6_A Hypothetical protein, I 97.9 0.0019 6.3E-08 69.5 24.5 190 486-678 152-377 (433)
334 2kwl_A ACP, acyl carrier prote 97.9 1.3E-05 4.5E-10 63.8 5.4 67 287-353 7-82 (84)
335 1af8_A Actinorhodin polyketide 97.9 1.6E-05 5.4E-10 63.6 5.8 65 290-354 6-82 (86)
336 4b2g_A GH3-1 auxin conjugating 97.9 2.4E-05 8.3E-10 85.5 9.0 43 149-191 412-458 (609)
337 3v64_C Agrin; beta propeller, 97.9 0.0073 2.5E-07 62.8 27.8 231 486-724 44-282 (349)
338 2p9w_A MAL S 1 allergenic prot 97.9 0.0061 2.1E-07 61.3 25.5 147 484-631 22-215 (334)
339 3v65_B Low-density lipoprotein 97.9 0.0046 1.6E-07 65.4 26.5 233 486-725 87-326 (386)
340 4eql_A 4-substituted benzoates 97.8 5E-05 1.7E-09 83.0 10.6 44 149-192 400-447 (581)
341 3p5b_L Low density lipoprotein 97.8 0.0079 2.7E-07 63.9 26.7 233 488-725 85-328 (400)
342 2ece_A 462AA long hypothetical 97.8 0.025 8.5E-07 59.5 29.3 227 497-727 44-365 (462)
343 1fwx_A Nitrous oxide reductase 97.8 0.0033 1.1E-07 68.5 23.5 231 485-721 100-435 (595)
344 4epl_A Jasmonic acid-amido syn 97.8 0.0001 3.6E-09 80.2 11.6 89 149-240 407-507 (581)
345 2p9w_A MAL S 1 allergenic prot 97.7 0.0043 1.5E-07 62.3 21.9 149 521-672 17-212 (334)
346 2cg5_B Fatty acid synthase; tr 97.7 2.4E-05 8.2E-10 62.0 4.4 61 293-354 10-79 (91)
347 1fwx_A Nitrous oxide reductase 97.7 0.0028 9.5E-08 69.1 21.7 186 527-717 100-361 (595)
348 1ijq_A LDL receptor, low-densi 97.7 0.022 7.5E-07 58.3 27.2 224 531-771 4-239 (316)
349 2amw_A Hypothetical protein NE 97.7 4.7E-05 1.6E-09 60.3 5.1 65 290-354 3-81 (83)
350 3tc9_A Hypothetical hydrolase; 97.6 0.0065 2.2E-07 65.2 23.4 144 485-631 148-301 (430)
351 3qqz_A Putative uncharacterize 97.6 0.012 3.9E-07 57.5 22.7 197 520-718 30-254 (255)
352 1vku_A Acyl carrier protein; T 97.6 7.2E-05 2.5E-09 61.1 5.8 68 287-354 15-90 (100)
353 3b7f_A Glycosyl hydrolase, BNR 97.6 0.0036 1.2E-07 66.6 20.7 187 484-681 20-267 (394)
354 3iuj_A Prolyl endopeptidase; h 97.6 0.0043 1.5E-07 71.6 22.7 231 521-771 133-406 (693)
355 3m0c_C LDL receptor, low-densi 97.6 0.021 7.3E-07 65.8 28.1 232 488-724 397-639 (791)
356 3v65_B Low-density lipoprotein 97.6 0.018 6.2E-07 60.8 25.7 225 529-771 88-319 (386)
357 4dxe_H ACP, acyl carrier prote 97.5 8.9E-05 3E-09 60.7 5.1 66 288-353 25-99 (101)
358 2lte_A Specialized acyl carrie 96.7 1.3E-05 4.4E-10 66.1 0.0 65 290-354 27-99 (103)
359 3hx6_A Type 4 fimbrial biogene 97.5 0.0022 7.5E-08 68.8 16.4 146 485-631 84-284 (570)
360 3v64_C Agrin; beta propeller, 97.5 0.046 1.6E-06 56.7 26.6 184 529-717 45-234 (349)
361 3ii7_A Kelch-like protein 7; p 97.4 0.074 2.5E-06 53.9 27.0 207 496-719 24-274 (306)
362 3sov_A LRP-6, low-density lipo 97.4 0.061 2.1E-06 54.9 26.0 231 488-725 6-246 (318)
363 2fq1_A Isochorismatase; ENTB, 97.4 0.00015 5.2E-09 73.0 6.2 59 292-351 218-283 (287)
364 1dv5_A APO-DCP, APO-D-alanyl c 97.4 0.00024 8.2E-09 55.6 6.0 66 288-353 3-79 (80)
365 3hx6_A Type 4 fimbrial biogene 97.4 0.007 2.4E-07 65.0 18.5 145 528-675 85-285 (570)
366 4asc_A Kelch repeat and BTB do 97.4 0.05 1.7E-06 55.5 24.9 176 489-682 8-227 (315)
367 2vpj_A Kelch-like protein 12; 97.3 0.045 1.5E-06 55.4 24.1 209 496-719 31-280 (301)
368 2qe8_A Uncharacterized protein 97.3 0.022 7.4E-07 59.1 21.9 76 477-552 68-159 (343)
369 2l4b_A Acyl carrier protein; i 97.3 0.00021 7.2E-09 57.2 4.9 67 288-354 7-85 (88)
370 2kw2_A Specialized acyl carrie 97.3 0.00016 5.4E-09 59.5 3.8 66 289-354 3-88 (101)
371 3p5b_L Low density lipoprotein 97.2 0.13 4.5E-06 54.4 26.7 227 530-772 85-322 (400)
372 3kya_A Putative phosphatase; s 97.2 0.069 2.4E-06 57.4 24.3 193 485-678 150-413 (496)
373 3sre_A PON1, serum paraoxonase 97.2 0.041 1.4E-06 56.6 21.5 181 536-725 81-308 (355)
374 3sov_A LRP-6, low-density lipo 97.2 0.091 3.1E-06 53.5 24.1 225 531-772 7-240 (318)
375 3b7f_A Glycosyl hydrolase, BNR 97.2 0.035 1.2E-06 58.8 21.8 187 527-724 21-267 (394)
376 4hw6_A Hypothetical protein, I 97.2 0.029 1E-06 60.1 21.1 195 522-721 144-377 (433)
377 1xip_A Nucleoporin NUP159; bet 97.2 0.032 1.1E-06 58.2 20.7 135 482-631 45-191 (388)
378 3ii7_A Kelch-like protein 7; p 97.2 0.11 3.9E-06 52.5 24.8 216 573-826 15-275 (306)
379 1n7d_A LDL receptor, low-densi 97.1 0.0027 9.1E-08 72.9 13.2 232 488-724 379-621 (699)
380 4asc_A Kelch repeat and BTB do 97.1 0.1 3.5E-06 53.1 23.4 172 538-725 13-227 (315)
381 4a0p_A LRP6, LRP-6, low-densit 97.0 0.23 7.8E-06 55.9 27.7 226 487-720 7-240 (628)
382 2xn4_A Kelch-like protein 2; s 97.0 0.19 6.4E-06 50.8 24.8 209 496-724 30-281 (302)
383 2woz_A Kelch repeat and BTB do 97.0 0.19 6.3E-06 51.3 24.9 168 497-681 25-236 (318)
384 2zux_A YESW protein; beta-prop 97.0 0.22 7.5E-06 53.2 24.8 284 462-769 160-531 (591)
385 3sre_A PON1, serum paraoxonase 97.0 0.22 7.4E-06 51.2 24.5 193 485-682 59-308 (355)
386 3tc9_A Hypothetical hydrolase; 96.9 0.18 6E-06 54.0 24.6 146 522-672 142-298 (430)
387 2woz_A Kelch repeat and BTB do 96.9 0.27 9.3E-06 50.0 25.2 172 538-725 24-237 (318)
388 2cgq_A Acyl carrier protein AC 96.9 0.0012 4.2E-08 54.9 5.7 66 287-355 28-100 (113)
389 1zgk_A Kelch-like ECH-associat 96.9 0.14 4.8E-06 51.9 22.4 206 496-719 39-289 (308)
390 2xbg_A YCF48-like protein; pho 96.8 0.2 6.8E-06 51.3 23.3 257 529-821 47-320 (327)
391 3qqz_A Putative uncharacterize 96.8 0.26 8.8E-06 47.9 22.5 181 485-672 37-250 (255)
392 2zux_A YESW protein; beta-prop 96.8 0.17 6E-06 54.0 22.1 183 538-726 151-409 (591)
393 3amr_A 3-phytase; beta-propell 96.8 0.54 1.8E-05 47.7 25.0 194 488-684 41-274 (355)
394 3s94_A LRP-6, low-density lipo 96.7 0.47 1.6E-05 53.2 27.0 224 494-721 16-247 (619)
395 2lki_A Putative uncharacterize 96.7 0.0021 7.1E-08 52.9 5.4 66 289-354 24-103 (105)
396 3m0c_C LDL receptor, low-densi 96.7 0.41 1.4E-05 55.2 26.3 225 530-771 397-633 (791)
397 3s25_A Hypothetical 7-bladed b 96.6 0.6 2E-05 46.9 24.2 247 523-822 20-292 (302)
398 2l9f_A CALE8, meacp; transfera 96.6 0.0043 1.5E-07 49.5 6.3 69 286-354 11-89 (102)
399 1zgk_A Kelch-like ECH-associat 96.6 0.42 1.4E-05 48.3 23.6 210 580-826 39-290 (308)
400 2zuy_A YESX protein; beta-prop 96.5 0.21 7.1E-06 53.6 20.6 183 539-727 156-414 (620)
401 3ce7_A Specific mitochodrial a 96.5 0.0042 1.4E-07 51.3 6.2 69 286-354 16-97 (107)
402 3elq_A Arylsulfate sulfotransf 96.5 0.56 1.9E-05 50.8 24.2 108 530-643 219-394 (571)
403 3kya_A Putative phosphatase; s 96.5 0.27 9.1E-06 52.9 21.6 195 522-721 144-413 (496)
404 3amr_A 3-phytase; beta-propell 96.4 0.94 3.2E-05 45.9 25.3 190 536-728 48-275 (355)
405 2vpj_A Kelch-like protein 12; 96.4 0.44 1.5E-05 47.9 22.0 128 496-631 78-231 (301)
406 2uvk_A YJHT; unknown function, 96.4 0.53 1.8E-05 48.7 23.2 66 486-554 19-100 (357)
407 2kci_A Putative acyl carrier p 96.4 0.003 1E-07 49.6 4.3 65 290-354 3-76 (87)
408 4a0p_A LRP6, LRP-6, low-densit 96.3 1.2 4.2E-05 49.9 27.1 178 536-718 13-198 (628)
409 3s94_A LRP-6, low-density lipo 96.3 1.9 6.5E-05 48.2 34.9 190 483-678 48-247 (619)
410 3elq_A Arylsulfate sulfotransf 96.3 1 3.6E-05 48.8 24.8 68 485-555 216-300 (571)
411 1fh1_A NODF, nodulation protei 96.3 0.00028 9.5E-09 56.9 -2.4 65 290-354 5-88 (92)
412 2xn4_A Kelch-like protein 2; s 96.2 0.62 2.1E-05 46.8 22.2 126 496-631 77-229 (302)
413 2xbg_A YCF48-like protein; pho 96.2 0.83 2.8E-05 46.6 23.3 250 486-768 46-320 (327)
414 3a9g_A Putative uncharacterize 96.2 1.4 4.7E-05 45.5 25.3 139 521-664 33-216 (354)
415 1k3i_A Galactose oxidase precu 96.1 0.33 1.1E-05 55.3 21.5 133 498-640 168-328 (656)
416 1n7d_A LDL receptor, low-densi 96.1 0.027 9.1E-07 64.5 12.2 220 537-771 385-615 (699)
417 1xip_A Nucleoporin NUP159; bet 96.0 0.083 2.8E-06 55.1 14.1 141 520-676 41-193 (388)
418 2uvk_A YJHT; unknown function, 95.9 0.79 2.7E-05 47.3 21.8 64 571-640 20-100 (357)
419 3a9g_A Putative uncharacterize 95.9 1.8 6.1E-05 44.6 23.9 62 485-548 38-115 (354)
420 1k3i_A Galactose oxidase precu 95.8 0.75 2.6E-05 52.2 22.5 94 497-596 220-328 (656)
421 3ei3_A DNA damage-binding prot 95.7 5.4 0.00019 48.1 37.1 123 465-594 507-643 (1158)
422 2ism_A Putative oxidoreductase 95.6 2.6 8.8E-05 43.4 24.8 69 478-548 33-115 (352)
423 2xe4_A Oligopeptidase B; hydro 95.4 1.7 5.8E-05 50.2 23.7 151 520-674 177-354 (751)
424 3s25_A Hypothetical 7-bladed b 95.3 2.7 9.3E-05 42.0 29.7 212 485-723 24-260 (302)
425 2xe4_A Oligopeptidase B; hydro 95.1 1.5 5.2E-05 50.5 22.2 132 497-631 202-354 (751)
426 2ism_A Putative oxidoreductase 95.1 3 0.0001 42.9 22.2 106 521-630 35-177 (352)
427 2g8s_A Glucose/sorbosone dehyd 94.2 4.1 0.00014 41.8 20.6 141 521-665 22-217 (353)
428 3ei3_A DNA damage-binding prot 93.7 16 0.00055 44.1 38.1 140 497-638 493-643 (1158)
429 2xzh_A Clathrin heavy chain 1; 92.7 8.7 0.0003 38.3 28.9 253 496-771 49-333 (365)
430 2zwa_A Leucine carboxyl methyl 92.4 5.4 0.00018 45.4 19.6 28 327-354 273-300 (695)
431 2zuy_A YESX protein; beta-prop 92.3 14 0.00049 39.8 30.7 174 462-643 164-414 (620)
432 1tl2_A L10, protein (tachylect 90.9 0.77 2.6E-05 42.9 8.3 72 565-641 47-125 (236)
433 1bpo_A Protein (clathrin); cla 90.7 18 0.0006 37.7 20.6 210 495-722 85-326 (494)
434 1tl2_A L10, protein (tachylect 90.5 2.3 7.8E-05 39.8 11.1 70 521-594 45-122 (236)
435 2zwa_A Leucine carboxyl methyl 90.3 16 0.00054 41.5 20.7 130 496-631 412-577 (695)
436 2g8s_A Glucose/sorbosone dehyd 90.0 18 0.00063 36.9 22.0 70 477-547 19-107 (353)
437 3uc1_A DNA gyrase subunit A; D 88.5 22 0.00076 35.7 17.8 184 486-672 3-225 (327)
438 2xzh_A Clathrin heavy chain 1; 88.4 22 0.00074 35.5 23.6 217 487-722 79-327 (365)
439 1bpo_A Protein (clathrin); cla 86.6 33 0.0011 35.7 30.2 254 496-771 48-332 (494)
440 1cru_A Protein (soluble quinop 85.3 9 0.00031 40.8 13.6 71 477-547 28-123 (454)
441 3mez_B Mannose-specific lectin 84.6 7.1 0.00024 32.1 9.8 86 488-596 26-111 (113)
442 3q6k_A 43.2 kDa salivary prote 82.7 46 0.0016 34.1 19.8 56 538-593 123-194 (381)
443 1xi4_A Clathrin heavy chain; a 81.3 58 0.002 39.6 18.9 87 496-589 48-134 (1630)
444 1cru_A Protein (soluble quinop 80.9 23 0.00077 37.7 14.6 29 521-550 31-60 (454)
445 2k2q_B Surfactin synthetase th 80.4 0.37 1.3E-05 46.5 0.3 63 373-435 13-94 (242)
446 3q6k_A 43.2 kDa salivary prote 79.2 60 0.002 33.2 23.3 58 497-555 124-197 (381)
447 3uc1_A DNA gyrase subunit A; D 77.6 61 0.0021 32.4 17.6 101 528-630 109-227 (327)
448 1xi4_A Clathrin heavy chain; a 72.4 50 0.0017 40.1 15.1 36 648-683 262-298 (1630)
449 1suu_A DNA gyrase subunit A; t 72.1 81 0.0028 31.3 20.7 185 485-672 7-228 (312)
450 3das_A Putative oxidoreductase 71.3 90 0.0031 31.5 16.6 108 521-630 36-182 (347)
451 3tjm_A Fatty acid synthase; th 69.9 1.3 4.4E-05 44.0 1.1 62 372-435 23-99 (283)
452 3das_A Putative oxidoreductase 68.0 1.1E+02 0.0036 31.0 23.5 71 477-547 33-116 (347)
453 3no0_A DNA gyrase subunit A; D 66.2 72 0.0025 31.0 12.8 143 485-630 79-245 (276)
454 3lcr_A Tautomycetin biosynthet 65.2 0.99 3.4E-05 45.8 -0.9 65 371-435 79-164 (319)
455 3ils_A PKS, aflatoxin biosynth 64.6 0.84 2.9E-05 44.8 -1.6 62 372-435 20-101 (265)
456 3qmv_A Thioesterase, REDJ; alp 64.4 1.4 4.7E-05 43.5 -0.0 62 374-435 52-134 (280)
457 2jxw_A WW domain-binding prote 61.8 7.7 0.00026 29.1 3.7 60 493-553 12-71 (75)
458 4h3o_A Lectin; cadmium, plant 60.9 63 0.0021 25.9 9.5 59 613-683 20-78 (105)
459 1zvt_A Topoisomerase IV subuni 60.1 1.2E+02 0.004 29.1 12.9 142 488-631 4-163 (256)
460 3mez_B Mannose-specific lectin 59.7 69 0.0024 26.0 11.4 86 613-723 25-110 (113)
461 3m7h_A Putidacin L1; monocot m 58.7 1.3E+02 0.0045 29.1 13.1 79 619-724 171-249 (276)
462 2wg3_C Hedgehog-interacting pr 57.1 2E+02 0.0067 30.4 17.0 25 698-722 293-317 (463)
463 4h3o_A Lectin; cadmium, plant 56.5 75 0.0026 25.4 9.8 56 574-642 23-78 (105)
464 1sqj_A OXG-RCBH, oligoxylogluc 56.3 2.5E+02 0.0084 32.1 17.1 147 485-641 26-207 (789)
465 1wp5_A Topoisomerase IV; broke 55.6 1.7E+02 0.0057 29.1 20.3 144 486-631 5-174 (323)
466 3a0c_A Mannose/sialic acid-bin 55.4 81 0.0028 25.4 11.7 51 493-555 27-77 (110)
467 3dzw_A Agglutinin; lectin, man 55.0 60 0.002 26.2 8.5 80 492-596 25-104 (109)
468 3no0_A DNA gyrase subunit A; D 54.9 1.5E+02 0.0053 28.6 15.5 157 655-822 79-245 (276)
469 1xd5_A Gastrodianin-1, antifun 54.1 86 0.0029 25.3 10.8 81 493-596 26-106 (112)
470 2cb9_A Fengycin synthetase; th 53.5 1.4 4.8E-05 42.5 -2.1 64 372-435 21-93 (244)
471 1wp5_A Topoisomerase IV; broke 53.1 1.8E+02 0.0062 28.8 18.9 103 485-588 49-173 (323)
472 1zi0_A DNA gyrase subunit A; b 53.0 1.8E+02 0.0061 28.7 22.5 143 486-630 3-175 (307)
473 2jxw_A WW domain-binding prote 50.8 57 0.002 24.2 7.0 60 578-640 13-72 (75)
474 3r0e_B Lectin; carbohydrate bi 50.1 66 0.0023 26.0 7.9 78 493-596 31-108 (110)
475 1kez_A Erythronolide synthase; 49.2 4.3 0.00015 40.4 0.6 63 372-435 66-150 (300)
476 3l6v_A GYRA, DNA gyrase subuni 48.3 2.3E+02 0.008 28.7 21.0 144 485-630 6-179 (370)
477 1jmk_C SRFTE, surfactin synthe 48.1 1.1 3.6E-05 42.8 -4.0 62 373-435 17-87 (230)
478 1b2p_A Protein (lectin); manno 45.2 1.3E+02 0.0043 24.7 9.3 51 493-555 37-87 (119)
479 1suu_A DNA gyrase subunit A; t 41.5 2.7E+02 0.0092 27.4 18.9 144 485-630 57-230 (312)
480 1b2p_A Protein (lectin); manno 41.1 1.1E+02 0.0037 25.1 8.0 50 536-597 38-87 (119)
481 3l6v_A GYRA, DNA gyrase subuni 39.0 3.2E+02 0.011 27.6 22.0 103 611-716 56-179 (370)
482 3m7h_A Putidacin L1; monocot m 38.6 2.8E+02 0.0095 26.8 14.0 83 536-645 172-254 (276)
483 3r0e_A Lectin; carbohydrate bi 38.0 1.2E+02 0.0043 24.2 7.8 77 493-597 28-104 (109)
484 3dzw_A Agglutinin; lectin, man 38.0 1.5E+02 0.0053 23.6 9.7 51 577-641 26-76 (109)
485 2dpf_A Curculin; sweet taste, 37.3 1.6E+02 0.0056 23.7 9.7 51 493-555 27-77 (115)
486 3bf7_A Esterase YBFF; thioeste 36.9 9.2 0.00032 36.7 0.8 64 372-435 15-97 (255)
487 1zi0_A DNA gyrase subunit A; b 36.6 3.2E+02 0.011 26.8 22.6 101 612-715 109-224 (307)
488 2l5f_A PRE-mRNA-processing fac 35.7 9.9 0.00034 29.8 0.6 61 493-554 21-81 (92)
489 3v48_A Aminohydrolase, putativ 35.3 9.2 0.00031 37.1 0.5 64 372-435 14-98 (268)
490 3ibt_A 1H-3-hydroxy-4-oxoquino 33.7 11 0.00036 36.2 0.6 64 372-435 20-103 (264)
491 3a0c_A Mannose/sialic acid-bin 33.5 1.8E+02 0.0063 23.2 11.9 58 613-683 21-78 (110)
492 2zzt_A Putative uncharacterize 33.0 1.9E+02 0.0063 23.1 8.4 62 181-242 11-74 (107)
493 3mez_A Mannose-specific lectin 32.3 1.8E+02 0.0063 23.3 7.9 84 490-596 24-107 (111)
494 3fla_A RIFR; alpha-beta hydrol 30.9 10 0.00035 36.3 -0.0 63 373-435 20-102 (267)
495 4a9v_A PHOX; hydrolase, beta-p 30.8 1.4E+02 0.0047 32.4 8.6 53 484-536 484-550 (592)
496 3a0f_A Xyloglucanase; beta-pro 30.3 6.4E+02 0.022 28.5 16.2 183 569-768 555-760 (763)
497 2wj6_A 1H-3-hydroxy-4-oxoquina 30.1 16 0.00055 35.6 1.3 62 374-435 28-109 (276)
498 2xmz_A Hydrolase, alpha/beta h 29.7 11 0.00039 36.3 0.1 64 372-435 15-99 (269)
499 2l5f_A PRE-mRNA-processing fac 29.5 59 0.002 25.3 4.2 61 577-640 21-81 (92)
500 2cn3_A Xyloglucanase, beta-1,4 29.4 6.5E+02 0.022 28.2 17.6 50 485-536 34-92 (737)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-56 Score=552.54 Aligned_cols=393 Identities=23% Similarity=0.352 Sum_probs=326.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003327 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++++++.+.+++++++|.||+||++++++.......+ .....+++|+|+++++++|+|
T Consensus 718 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~i~d 792 (1304)
T 2vsq_A 718 WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP-----DSISSLPIGKPISNASVYILN 792 (1304)
T ss_dssp HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC-----SSCSSCCCBEECTTEEEEEEC
T ss_pred cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcc-----ccCCCCCCceeeCCCEEEEEC
Confidence 467899999999999999999999988788999999999999888765443211 123567899999999999999
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003327 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.|..|||+|+|+++++||+++|+.|+++|+..|.. .+.+||||||+|++++||.|+|+||+|||
T Consensus 793 ~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~---------~g~~~yrTGDl~~~~~dG~l~~~GR~d~q 863 (1304)
T 2vsq_A 793 EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFK---------PGETLYRTGDLARWLPDGTIEYAGRIDDQ 863 (1304)
T ss_dssp TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTS---------TTCEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCC---------CCCeeEecCCeEEEcCCCeEEEEcCCCCE
Confidence 876 457789999999999999999999999999876642 25789999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003327 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.|||++|.+||+|.+|+|++.++...+..++|+++..... ..+++++++++.||.||+|..++++
T Consensus 864 vki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~-----~~~~l~~~l~~~Lp~ymvP~~~~~l 938 (1304)
T 2vsq_A 864 VKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL-----SAEDVKAHLKKQLPAYMVPQTFTFL 938 (1304)
T ss_dssp EEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS-----CHHHHHHHHHHHSCGGGSCSEEEEE
T ss_pred EEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC-----CHHHHHHHHHHhChHhhhccEEEEe
Confidence 99999999999999999999999999999988877778899999876521 2357999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc--
Q 003327 253 DSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL-- 330 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l-- 330 (829)
++||+|++|||||++|++...... ......+.+++|+.|+++|+++|+.+.|+.+||||++|||||+|++|+++|
T Consensus 939 ~~lP~t~~GKidR~~L~~~~~~~~---~~~~~~p~~~~e~~l~~~~~~vL~~~~i~~~~~ff~lGg~Sl~a~~l~~~l~~ 1015 (1304)
T 2vsq_A 939 DELPLTTNGKVNKRLLPKPDQDQL---AEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKK 1015 (1304)
T ss_dssp SCCCCCSSCSSCCSCCCCCCGGGG---CCCCCCCSSHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHSSS
T ss_pred cccCCCCCcccCHhhcCCcchhhh---cccccCCCChHHHHHHHHHHHHcCCCccCCCCCHHHhCCChHHHHHHHHHHHH
Confidence 999999999999999987654322 123345778999999999999999999999999999999999999999986
Q ss_pred ----CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhhhhhcccccCCccccCC
Q 003327 331 ----GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKP 406 (829)
Q Consensus 331 ----~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~ 406 (829)
.+++..+|++||+++||.++.......... ..... .....+++|+|+..|....|..++.+|. +.++|+++
T Consensus 1016 ~~g~~l~~~~~~~~~ti~~la~~~~~~~~~~~~~--~~~~~--~~~~~~L~~l~~~~g~~~~y~~la~~L~-~~~v~~l~ 1090 (1304)
T 2vsq_A 1016 ELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQD--VTIMN--QDQEQIIFAFPPVLGYGLMYQNLSSRLP-SYKLCAFD 1090 (1304)
T ss_dssp TTSCCCCSSCTTTCCSHHHHHHHHHHTTSSSTTT--SEEEC--TTSCCEEECCCCTTCBGGGGHHHHTTCC-SCEEEECB
T ss_pred HhCCCCCHHHHHhCCCHHHHHHHHHhcCCCcccc--ccccc--cccCCcceeecccccchHHHHHHHhccc-ccceEeec
Confidence 378899999999999999998654322111 10111 1234569999999999999999999998 88888876
Q ss_pred cccccCC--------CCCccCCCCCC-eeeecccccee
Q 003327 407 ELHHHKD--------GLPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 407 ~~~~~~~--------~~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
......- ..-.+..||.| |||+|+.++++
T Consensus 1091 ~~~~~~~~~~~~~~i~~~~~~gp~~l~G~S~Gg~lA~e 1128 (1304)
T 2vsq_A 1091 FIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFE 1128 (1304)
T ss_dssp CCCSTTHHHHHHHHHHHHCCSSCEEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCeEEEEecCCchHHHH
Confidence 5321000 00112348999 99999998877
No 2
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.4e-53 Score=486.31 Aligned_cols=315 Identities=23% Similarity=0.311 Sum_probs=196.9
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003327 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||++++++.+++.+.+++++++|.||+||++++++....... .......++|+|+++++++
T Consensus 271 ~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-----~~~~~~~~iG~p~~~~~~~ 345 (620)
T 4dg8_A 271 DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD-----DLEEDDIPIGKAIAGTAVL 345 (620)
T ss_dssp CGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG-----GGGSSSCCCBEECTTEEEE
T ss_pred ChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc-----ccCCCCCCceecccCcEEE
Confidence 34568899999999999999999999988889999999999999987765433221 1122567899999999999
Q ss_pred EecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003327 93 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
|+|+++ +++..|||+|+|+++++||+++|+.|++.|...+... ...+||+|||+|++++||.|+|+||
T Consensus 346 i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~--------~~~~~yrTGDl~~~~~dG~l~~~GR 417 (620)
T 4dg8_A 346 LLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRG--------RLLRAYRTGDRARYDEQGRLRFIGR 417 (620)
T ss_dssp EECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETT--------EEEEEEEEEEEEEECTTSCEEEEEC
T ss_pred EECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCC--------CCceEEeCCCEEEECCCCeEEEEcc
Confidence 999876 3467799999999999999999999999998765321 1128999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003327 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.|||||++|+||+|.|||++|.+||+|.+|+|++.++...... +++++.... .++++++++||.||+|..
T Consensus 418 ~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~~---------~~~~~l~~~Lp~y~~P~~ 487 (620)
T 4dg8_A 418 GDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKAD---------ASPQALLRQLPTWQRPHA 487 (620)
T ss_dssp SSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECTT---------CCCHHHHHHSCGGGSCSE
T ss_pred CCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecChH---------HHHHHHHHhChhhcCCcE
Confidence 9999999999999999999999999999999999887755444 444443321 234456778999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHH
Q 003327 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 328 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 328 (829)
++++++||+|++|||||++|++.+...... ...+.++.|+.++++|+++|+.+.++.+||||++|||||+|++|++
T Consensus 488 ~~~v~~lP~t~~GKidR~~L~~~~~~~~~~----~~~~~~~~e~~l~~iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~~ 563 (620)
T 4dg8_A 488 CVRVEALPLTAHGKLDRAALLRRLEEPLER----CASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLVA 563 (620)
T ss_dssp EEECSSCCCC----CCHHHHHHHTCSCC----------------------------------------------------
T ss_pred EEEECcCCCCcccCHhHHHHhhcccccccc----ccCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhccCcHHHHHHHHH
Confidence 999999999999999999998766543322 2345677899999999999999999999999999999999999987
Q ss_pred Hc-------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 329 NL-------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 329 ~l-------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+| .+++.++|++||+++||.+|.+..
T Consensus 564 ~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~~ 596 (620)
T 4dg8_A 564 LCQSAGAGANLGLADLQANSRLDQFSRLLRSHG 596 (620)
T ss_dssp ---------------------------------
T ss_pred HHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhcC
Confidence 65 367889999999999999997654
No 3
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.3e-50 Score=464.52 Aligned_cols=307 Identities=22% Similarity=0.306 Sum_probs=262.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~ 92 (829)
...+++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... ......++|.|+ ++++++
T Consensus 298 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~~ 368 (617)
T 3rg2_A 298 RAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDS--------AEKIIHTQGYPMCPDDEVW 368 (617)
T ss_dssp TTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSC--------HHHHHHCCCEESCTTCEEE
T ss_pred cccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCc--------ccccccCCCccCCCCceEE
Confidence 34689999999999999999999999988 78999999999998655432111 011345789997 788999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.++.|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|+||.
T Consensus 369 i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~---------------~~~yrTGDl~~~~~dG~l~~~GR~ 433 (617)
T 3rg2_A 369 VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLISIDPEGYITVQGRE 433 (617)
T ss_dssp EECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCT---------------TSCEEEEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCC---------------CCceecCceEEEcCCceEEEEeec
Confidence 999776 45678999999999999999999999999953 679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCe
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~ 248 (829)
|||||++|+||+|.|||++|.+||.|.+|+|+..++...+..++++++..... ...++++++++ .||.||+|..
T Consensus 434 dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~-----~~~~l~~~l~~~~lp~~~vP~~ 508 (617)
T 3rg2_A 434 KDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL-----RAVQVRRFLREQGIAEFKLPDR 508 (617)
T ss_dssp SSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-----CHHHHHHHHHTTTCCGGGSCSE
T ss_pred CCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC-----CHHHHHHHHHhCCCccccCCcE
Confidence 99999999999999999999999999999999998888888899999887632 13578888988 6999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccC-cceeccCCCccccCCChHHHHHHH
Q 003327 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALM-VEEVLHHDNFFTMGGNSIAAAHVA 327 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff~lGgdSl~a~~l~ 327 (829)
++++++||+|++|||||++|++++...... ...+.+..++.++++|.++|+ .+.++.+||||++|||||+||+|+
T Consensus 509 ~~~v~~lP~t~~GKidR~~L~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~ 584 (617)
T 3rg2_A 509 VECVDSLPLTAVGKVDKKQLRQWLASRASA----GRASIPASKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMALA 584 (617)
T ss_dssp EEECSCCCBCTTSSBCHHHHHHHHHHHHHH----SSSCCCCSHHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHH
T ss_pred EEEecccCCCCCCCCcHHHHHHHHhccccc----ccccccccHHHHHHHHHHHhccCCCCCCCCChhhcCccHHHHHHHH
Confidence 999999999999999999999876543222 112233457789999999996 467899999999999999999999
Q ss_pred HHc-----CCcchhhhcCCCHHHHHHHHHhh
Q 003327 328 HNL-----GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 328 ~~l-----~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++| ++++..+|++||+++||++|.++
T Consensus 585 ~~l~~~~~~~~~~~~~~~pti~~la~~l~~~ 615 (617)
T 3rg2_A 585 ARWRKVHGDIDFVMLAKNPTIDAWWKLLSRE 615 (617)
T ss_dssp HHHHTTSTTCCHHHHHHSCCHHHHHHHHCC-
T ss_pred HHHHHhcCCCCHHHHhcCCCHHHHHHHHHhh
Confidence 876 48899999999999999998754
No 4
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.6e-42 Score=386.18 Aligned_cols=277 Identities=27% Similarity=0.435 Sum_probs=212.3
Q ss_pred cchhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccc
Q 003327 4 VLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG 83 (829)
Q Consensus 4 l~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (829)
++|++...+....+++||.+++|||++++++.+++.+ .++++|.||+||+++.++....... ......++|
T Consensus 279 ~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~~~~~~------~~~~~~~vG 349 (563)
T 1amu_A 279 LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE------TIGHSVPIG 349 (563)
T ss_dssp ECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS------CCCSSCCCB
T ss_pred eCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECcCHHhHhheeeecccc------cCCCCCccc
Confidence 4566666666667889999999999999999998876 3789999999999877665432211 112456899
Q ss_pred cccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003327 84 LPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 84 ~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
+|+++++++|+|+++ +.++.|||+|+|++++.||+++|+.|++.|...+.. .+++||+|||+|++++|
T Consensus 350 ~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~---------~g~~w~~TGDlg~~d~d 420 (563)
T 1amu_A 350 APIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV---------PGEKLYKTGDQARWLSD 420 (563)
T ss_dssp EECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS---------TTSEEEEEEEEEEECTT
T ss_pred ceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCC---------CCCEEEecCCEEEEcCC
Confidence 999999999999776 356679999999999999999999999999764431 24689999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcC
Q 003327 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l 240 (829)
|.|+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.++...++.++|++++.... ..++|+++++++|
T Consensus 421 G~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-----~~~~l~~~l~~~L 495 (563)
T 1amu_A 421 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----PLEQLRQFSSEEL 495 (563)
T ss_dssp SCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----CHHHHHHHHHHHS
T ss_pred CeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-----CHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999887788899999876432 2357999999999
Q ss_pred CCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcc
Q 003327 241 PLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVE 305 (829)
Q Consensus 241 ~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 305 (829)
|.|++|..++++++||+|++|||||++|++...... .......+.+++|+.|.++|+++|+.+
T Consensus 496 ~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~--~~~~~~~p~~~~e~~l~~iw~~~L~~~ 558 (563)
T 1amu_A 496 PTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFG--MRVDYEAPRNEIEETLVTIWQDVLGSH 558 (563)
T ss_dssp CGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC------------------------------
T ss_pred chhhCCcEEEEecccCCCCCcChhHHhcCCcccccc--cccccCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998654321 112234678899999999999999864
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=9e-40 Score=368.68 Aligned_cols=238 Identities=25% Similarity=0.352 Sum_probs=207.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+|+++++|.||+||++.+++....... ........++|+|+++++++|
T Consensus 293 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 368 (536)
T 3ni2_A 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAK----EPFDIKPGACGTVVRNAEMKI 368 (536)
T ss_dssp GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSS----SCCCCCTTCCCEECSSCEEEE
T ss_pred cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCC----ccccCCCCCeeEeCCCcEEEE
Confidence 4568999999999999999999999999999999999999999876554321110 111235678999999999999
Q ss_pred ecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 94 VESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++ + +.++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||+
T Consensus 369 ~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 433 (536)
T 3ni2_A 369 VDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID---------------KEGWLHTGDIGYIDDDDELFIVDRL 433 (536)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEEEEC
T ss_pred EeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc---------------CCCceEcccEEEEcCCceEEEEecc
Confidence 9854 3 4577899999999999999999999998873 3689999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++..+..... .++|+++++++||.|++|..+
T Consensus 434 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i 510 (536)
T 3ni2_A 434 KELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRV 510 (536)
T ss_dssp SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEE
T ss_pred cceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEE
Confidence 99999999999999999999999999999999999888888999999987654333 368999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 511 ~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 511 FFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EECSCCCBCTTSCBCHHHHHTC--
T ss_pred EEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999999999999988653
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.5e-40 Score=371.32 Aligned_cols=234 Identities=26% Similarity=0.341 Sum_probs=192.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.++|.+.+ +++++|.||+||+++.++..+.. .....++|+|+++++++|
T Consensus 337 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i 406 (580)
T 3etc_A 337 HYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM---------EPKPGSIGKPTPGYKIEL 406 (580)
T ss_dssp --CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTS---------CCCTTCCBEECTTCEEEE
T ss_pred cCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCC---------CCCCCccccCCCCCEEEE
Confidence 34678999999999999999999999887 78999999999998766543321 225678999999999999
Q ss_pred ecCCCC---CCCCCeEEEcc-----ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003327 94 VESDTV---KPDEGEIYAGG-----LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g-----~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
+|+++. +++.|||+|+| +++++||+++|+.|.+.|. ++||+|||+|++++||+|+|
T Consensus 407 vd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~----------------~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 407 MDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH----------------DGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp ECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEE
T ss_pred ECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC----------------CCEEecCcEEEECCCCcEEE
Confidence 998763 57789999997 7899999999999999883 57999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCc
Q 003327 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 245 (829)
+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|++++..+....+...++|++++++.||.|++
T Consensus 471 ~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 550 (580)
T 3etc_A 471 VGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKY 550 (580)
T ss_dssp EEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGC
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccC
Confidence 99999999999999999999999999999999999999998889999999999887666666778999999999999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhccccc
Q 003327 246 PNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.++++++||+|++|||+|++|++.++
T Consensus 551 P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 551 PRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp CSEEEEECC-------------------
T ss_pred CeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 9999999999999999999999998654
No 7
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.2e-39 Score=370.44 Aligned_cols=242 Identities=23% Similarity=0.314 Sum_probs=209.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 91 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 91 (829)
..++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... ......++|+|++++++
T Consensus 374 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~s~G~p~~g~~v 446 (652)
T 1pg4_A 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA-------IELKAGSATRPFFGVQP 446 (652)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT-------CCBCTTCCBSBCTTCCE
T ss_pred cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC-------cCccCCccccCcCCCeE
Confidence 356899999999999999999999999874 289999999999987655422111 12356789999999999
Q ss_pred EEecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003327 92 VLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 92 ~i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|+|+++. .+..|||+|+| |++++|||++|+.+.+.|... .++||+|||+|++++||+|+|+
T Consensus 447 ~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-------------~~g~y~TGDlg~~d~dG~l~i~ 513 (652)
T 1pg4_A 447 ALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-------------FKNMYFSGDGARRDEDGYYWIT 513 (652)
T ss_dssp EEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-------------STTSEEEEEEEEECTTSCEEEE
T ss_pred EEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc-------------CCCEEECCcEEEEcCCCcEEEE
Confidence 99998774 34569999999 799999999987766655321 2579999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++.+....+.+.++|+++++++||.|++|
T Consensus 514 GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 593 (652)
T 1pg4_A 514 GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATP 593 (652)
T ss_dssp EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCC
T ss_pred ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999888888999999998765544556789999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccc
Q 003327 247 NRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
..++++++||+|++|||+|++|++.+...
T Consensus 594 ~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 594 DVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred eEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 99999999999999999999999887654
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.9e-39 Score=361.13 Aligned_cols=232 Identities=21% Similarity=0.275 Sum_probs=204.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+.+.+.+ +++++|.||+||++..++... .......++|+|+++++++|
T Consensus 264 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~G~p~~~~~~~i 333 (503)
T 4fuq_A 264 KETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY---------DGDRVPGAVGPALPGVSARV 333 (503)
T ss_dssp TTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS---------SSCCCTTEEEEBCTTCEEEE
T ss_pred ccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC---------CCCCcCCccccCCCCeEEEE
Confidence 34578999999999999999999999987 689999999999986543211 11234568999999999999
Q ss_pred ecC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 94 VES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|+ ++ ++++.|||+|+|+++++||+++|+.|.+.|.. ++||+|||+|++++||.++|+||.
T Consensus 334 ~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~~~TGDl~~~~~dG~l~~~GR~ 398 (503)
T 4fuq_A 334 TDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRD---------------DGFFITGDLGKIDERGYVHILGRG 398 (503)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCT---------------TSCEEEEEEEEECTTCEEEECCSS
T ss_pred EECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCC---------------CCCeEcceeEEEcCCCcEEEEecC
Confidence 984 33 46778999999999999999999999998843 679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.+++++++....... .++++++++++||.|++|..+
T Consensus 399 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i 475 (503)
T 4fuq_A 399 KDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKV 475 (503)
T ss_dssp TTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEE
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEE
Confidence 99999999999999999999999999999999999988888999999987654433 367999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 476 ~~v~~lP~t~~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 476 IFVDDLPRNTMGKVQKNVLRETYK 499 (503)
T ss_dssp EEESCCCBCTTSCBCHHHHHHHTT
T ss_pred EEECCCCCCcccceeHHHHHHHHH
Confidence 999999999999999999998764
No 9
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.9e-39 Score=365.65 Aligned_cols=240 Identities=25% Similarity=0.292 Sum_probs=169.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHh----C--CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCC
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKL----F--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 88 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~----~--~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 88 (829)
.++++||.+++|||++++++.+++.+. + |+++++|.||+||++.+++...... .....++|+|+++
T Consensus 293 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~p~~~ 364 (549)
T 3g7s_A 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR--------LDKSTTQGVPMSD 364 (549)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG--------GGGTTSCCEECTT
T ss_pred CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc--------cCcCCCccccCCC
Confidence 568999999999999999999999887 5 3489999999999997766533211 1245689999999
Q ss_pred cEEEEec-CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 003327 89 CDIVLVE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 164 (829)
Q Consensus 89 ~~~~i~d-~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 164 (829)
++++|+| +++ +.++.|||+|+|++++.||+++|+.|++.|...+ ++.+||+|||+|++++||.|+
T Consensus 365 ~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~-----------~g~~~~~TGDl~~~~~dG~l~ 433 (549)
T 3g7s_A 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE-----------KGRKFFRTGDVGFIDEEGFLH 433 (549)
T ss_dssp CEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT-----------TCCEEEEEEEEEEECTTSCEE
T ss_pred CEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccC-----------CCCceEccCcEEEEcCCceEE
Confidence 9999998 444 4677899999999999999999999999996422 145699999999999999999
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCC
Q 003327 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 244 (829)
|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+... .....++|+++++++||.|+
T Consensus 434 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-~~~~~~~l~~~l~~~L~~~~ 512 (549)
T 3g7s_A 434 FQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR-GKVDEEDIIEWVRERISGYK 512 (549)
T ss_dssp EEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-TSCCHHHHHHHHHTTCC---
T ss_pred EeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-CcCCHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999988877888999999876521 11234689999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003327 245 IPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+|..++++++||+|++|||||++|++.+..
T Consensus 513 ~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 513 RVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp --CCCCEEEECC------------------
T ss_pred cceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 999999999999999999999999987654
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-38 Score=356.91 Aligned_cols=244 Identities=30% Similarity=0.480 Sum_probs=211.2
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+|+++++|.||+||+++.++....... ........++|+|+++++++|
T Consensus 256 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 331 (511)
T 3e7w_A 256 QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITND----VISRSESLPVGFAKPDMNIFI 331 (511)
T ss_dssp TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHH----HHTTCSSCCCBEECTTCEEEE
T ss_pred cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccc----ccccCCcCCCcceeCCCEEEE
Confidence 4567899999999999999999999999999999999999999877665432210 011235568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003327 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|++.|...+ +.+||+|||+|++ +||.++|+||.|
T Consensus 332 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------g~~~~~TGDlg~~-~dG~l~~~GR~~ 398 (511)
T 3e7w_A 332 MDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE------------GQWAYRTGDAGFI-QDGQIFCQGRLD 398 (511)
T ss_dssp ECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESS------------SSEEEEEEEEEEE-ETTEEEEEEESS
T ss_pred ECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCC------------CCEEEeCCCeEEc-cCCeEEEEcccc
Confidence 99876 3567799999999999999999999999986421 3568999999998 699999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..+..+++++++...... .....++|+++++++||.|++|..+
T Consensus 399 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~ 478 (511)
T 3e7w_A 399 FQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKF 478 (511)
T ss_dssp SEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEE
T ss_pred CEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeE
Confidence 999999999999999999999999999999998887777889999998765433 3345678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++++||+|++|||||++|++.+..
T Consensus 479 ~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 479 IYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp EECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEeccCCCCCCcCccHHHHHhHHhh
Confidence 9999999999999999999987653
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.2e-38 Score=355.71 Aligned_cols=245 Identities=31% Similarity=0.486 Sum_probs=212.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||+++.++....... ........++|+|++++++++
T Consensus 257 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 332 (512)
T 3fce_A 257 ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE----VLDQYKSLPVGYCKSDCRLLI 332 (512)
T ss_dssp TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHH----HHHHCSSCCCEEECTTCEEEE
T ss_pred chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccc----cccccCCCccccccCCcEEEE
Confidence 4568899999999999999999999999999999999999999887764332110 011225678999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003327 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|.+.|...+ +++||+|||+|++ +||.++|+||.|
T Consensus 333 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------~~~~~~TGDlg~~-~dG~l~i~GR~~ 399 (512)
T 3fce_A 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMID------------GERAYKTGDAGYV-ENGLLFYNGRLD 399 (512)
T ss_dssp ECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEET------------TEEEEEEEEEEEE-ETTEEEEEEEGG
T ss_pred ECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCC------------CCEEEeCCceEEe-cCCEEEEecccC
Confidence 99876 3567899999999999999999999999885421 4689999999998 899999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.++...+..+++++++...... .....++|+++++++||.|++|..+
T Consensus 400 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~ 479 (512)
T 3fce_A 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479 (512)
T ss_dssp GCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEE
T ss_pred CEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEE
Confidence 999999999999999999999999999999999888888889999998765433 3345678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
+++++||+|++|||+|++|++.+...
T Consensus 480 ~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 480 MYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEecccCCCCCcChHHHHHHhhhhhc
Confidence 99999999999999999999876543
No 12
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.8e-39 Score=360.16 Aligned_cols=235 Identities=25% Similarity=0.394 Sum_probs=201.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCc-EEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC-DIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~ 92 (829)
..++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++... .+ ......++|+|+++. +++
T Consensus 294 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~---~~-----~~~~~~~~G~p~~~~~~~~ 364 (539)
T 1mdb_A 294 RDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLD---DP-----EEIIVNTQGKPMSPYDESR 364 (539)
T ss_dssp CCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTT---SC-----HHHHHHCCCEESSTTCEEE
T ss_pred CCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCC---Cc-----HHhcCCCCCcccCCCceEE
Confidence 45689999999999999999999999988 789999999999764333211 00 011346799999764 799
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.++.|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|+||+
T Consensus 365 i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~~~TGDlg~~~~dG~l~~~GR~ 429 (539)
T 1mdb_A 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE---------------DGFYRTGDIVRLTRDGYIVVEGRA 429 (539)
T ss_dssp EECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCT---------------TSCEEEEEEEEECTTSCEEEEEEG
T ss_pred EECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccC---------------CCCeecCceEEECCCCcEEEeccc
Confidence 998776 35678999999999999999999999988853 579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCe
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~ 248 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++..... ..++|+++++++ ||.|++|..
T Consensus 430 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~l~~~~L~~~~~P~~ 505 (539)
T 1mdb_A 430 KDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP----KAAELKAFLRERGLAAYKIPDR 505 (539)
T ss_dssp GGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC----CHHHHHHHHHHTTCCGGGSCSE
T ss_pred cceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCC----CHHHHHHHHHhCCCCcccCCCE
Confidence 999999999999999999999999999999999998888888999999874322 235789999997 999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccccc
Q 003327 249 FVFMDSLPMTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 276 (829)
++++++||+|++|||||++|++.+...+
T Consensus 506 i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 506 VEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 9999999999999999999988765443
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.8e-38 Score=354.56 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=201.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+.+.+. +++++|.||+||+++.++...... ......++|+|+++++++++
T Consensus 281 ~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 351 (517)
T 3r44_A 281 LDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSED-------ALRKAGSAGRATMFTDVAVR 351 (517)
T ss_dssp CCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGG-------TTTTTTCCBEECTTEEEEEE
T ss_pred CCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCcc-------ccccCCCCCcCCCCeEEEEE
Confidence 457899999999999999999999886 789999999999987766543221 12256789999999999999
Q ss_pred cCCCCC--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003327 95 ESDTVK--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 95 d~~~~~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
|+++.. ...|||+|+|++++.||+++|+.|.+.| .++||+|||+|++++||.|+|+||.||+
T Consensus 352 d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f----------------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ 415 (517)
T 3r44_A 352 GDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAF----------------DNGWFRTGDIGEIDDEGYLYIKDRLKDM 415 (517)
T ss_dssp CTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTE----------------ETTEEEEEEEEEECTTSCEEEEECGGGC
T ss_pred CCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhh----------------cCCCEecceeEEEcCCeeEEEecCCcCE
Confidence 887632 2279999999999999999999999988 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003327 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.|||++|.+||+|.+|+|++.+++..++.+++++ ........ .++|+++++++||.|++|..++++
T Consensus 416 ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v 491 (517)
T 3r44_A 416 IISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFA 491 (517)
T ss_dssp EEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred EEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEE
Confidence 99999999999999999999999999999999888888888888 44332222 368999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccccc
Q 003327 253 DSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
++||+|++|||||++|++.+...
T Consensus 492 ~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 492 EAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp SCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCCCCCCCcCccHHHHHHHHHhh
Confidence 99999999999999999877543
No 14
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.1e-38 Score=356.35 Aligned_cols=228 Identities=25% Similarity=0.388 Sum_probs=185.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003327 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.++++|.+++|||++++++.+++.+.+ +++++|.||+||+++.++.... ......++|+|+++++++|+|
T Consensus 270 ~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~vG~p~~~~~~~i~d 339 (505)
T 3nyq_A 270 ALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRAD---------GEPRAGTVGVPLPGVELRLVE 339 (505)
T ss_dssp HHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTT---------SCCCTTCCCEECTTCEEEEC-
T ss_pred ccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCC---------CCCCCCCcccCCCCCEEEEEC
Confidence 467899999999999999999999887 7899999999999876553221 122456899999999999999
Q ss_pred CCCCC------CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 96 SDTVK------PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 96 ~~~~~------~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+++.+ ++.|||+|+|++++.||+++|+.|++.|.. ++||+|||+|++++||.++|+||+
T Consensus 340 ~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~y~TGDl~~~~~dG~l~~~GR~ 404 (505)
T 3nyq_A 340 EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTE---------------DGFFRTGDMAVRDPDGYVRIVGRK 404 (505)
T ss_dssp ----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCT---------------TSCEEEEEEEEECTTSCEEEEEES
T ss_pred CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcC---------------CCCCccCCeEEECCCccEEEeCCc
Confidence 87632 567999999999999999999999998853 679999999999999999999997
Q ss_pred -CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003327 170 -DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 170 -dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|++||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|++++...... ...++|+++++++||.||+|..
T Consensus 405 ~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~ 482 (505)
T 3nyq_A 405 ATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP--PALGTLADHVAARLAPHKRPRV 482 (505)
T ss_dssp SCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC--CCHHHHHHHHHHHTCGGGSCSE
T ss_pred cCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC--CCHHHHHHHHHhhCCCCcCccE
Confidence 6999999999999999999999999999999999998888999999998753221 2246899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcc
Q 003327 249 FVFMDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~ 270 (829)
++++++||+|++|||||++|++
T Consensus 483 i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 483 VRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEECSCCCC-------------
T ss_pred EEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999975
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.8e-38 Score=356.88 Aligned_cols=234 Identities=24% Similarity=0.322 Sum_probs=206.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... .....++|+|+++++++|
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~p~~~~~v~i 387 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTM---------KIKPGYMGTAASCYDVQI 387 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS---------CCCTTCCCEECTTCCEEE
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCccc---------ccCCCcccccCCCceEEE
Confidence 34578999999999999999999999887 78999999999998765532211 124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEc-----cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003327 94 VESDT---VKPDEGEIYAG-----GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~-----g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
+|+++ +.++.|||+|+ |++++.||+++|+.|.+.|. ++||+|||+|++++||.|+|
T Consensus 388 ~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~----------------~~~~~TGDlg~~d~dG~l~~ 451 (570)
T 3c5e_A 388 IDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR----------------GDFWLLGDRGIKDEDGYFQF 451 (570)
T ss_dssp ECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE----------------TTEEEEEEEEEECTTSCEEE
T ss_pred ECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc----------------CCccccceeEEEcCCceEEE
Confidence 99776 35678999998 99999999999999988883 47999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC--CchHHHHHHHHHHHHhcCCCC
Q 003327 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK--TSSEIFLSSIKSWVSSKLPLA 243 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~l~~~l~~~ 243 (829)
+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|++.... ...+...++|++++++.||.|
T Consensus 452 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 531 (570)
T 3c5e_A 452 MGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531 (570)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGG
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccc
Confidence 999999999999999999999999999999999999999888888999999987643 233456788999999999999
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003327 244 MIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|..++++++||+|++|||+|++|++.+.
T Consensus 532 ~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp GSCSEEEEESCCCBCTTCCBCHHHHHHHHT
T ss_pred cCCcEEEEeccCCCCCCcCCcHHHHHHHHH
Confidence 999999999999999999999999987653
No 16
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.1e-38 Score=356.55 Aligned_cols=234 Identities=19% Similarity=0.217 Sum_probs=206.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+++++++|.||+||++..++.... ......++|+|+++++++|+
T Consensus 306 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~ 376 (548)
T 2d1s_A 306 YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE---------GDDKPGASGKVVPLFKAKVI 376 (548)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT---------TCCCTTCCBEECTTCEEEEE
T ss_pred ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc---------ccCCCCCCCccCCCceEEEE
Confidence 367899999999999999999999999988899999999999876654211 12256789999999999999
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003327 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+ ++ ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|+++++|.++|+||.|
T Consensus 377 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~---------------~~g~~~TGDl~~~~~dG~l~~~GR~~ 441 (548)
T 2d1s_A 377 DLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELID---------------EEGWLHTGDIGYYDEEKHFFIVDRLK 441 (548)
T ss_dssp CTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEEEEGG
T ss_pred eCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhccc---------------CCcEEEccCEEEEcCCCeEEEecccc
Confidence 83 43 4567899999999999999999999988884 26799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC-eE
Q 003327 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN-RF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|++++..+.... .++|+++++++|+.|++|. .+
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i 518 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGV 518 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCE
T ss_pred ceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccE
Confidence 9999999999999999999999999999999999888888899999987653322 3679999999999999999 99
Q ss_pred EEeCcccCCCCCCcchhhhccccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
+++++||+|++|||+|++|++.+...
T Consensus 519 ~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 519 RFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEccCCCCCCcchhHHHHHHHHHhhh
Confidence 99999999999999999999876543
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.4e-38 Score=356.48 Aligned_cols=246 Identities=26% Similarity=0.442 Sum_probs=202.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||+++.++....... ........++|+|+++++++|
T Consensus 260 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~vG~p~~~~~~~i 335 (521)
T 3l8c_A 260 QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE----MVDNYTRLPIGYPKPDSPTYI 335 (521)
T ss_dssp TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH----HHHHCSSCEEEEECTTSCEEE
T ss_pred cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc----cccCCCccccccccCCCEEEE
Confidence 3568899999999999999999999999999999999999999877665432210 001124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003327 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|++.|...+ +++||+|||+|+++++|.++|+||.|
T Consensus 336 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------~~~~~~TGDlg~~d~dG~l~~~GR~~ 403 (521)
T 3l8c_A 336 IDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFK------------GQPAYHTGDIGSLTEDNILLYGGRLD 403 (521)
T ss_dssp ECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEET------------TEEEEEEEEEEEECSSSCEEEEEEGG
T ss_pred ECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCC------------CceeeeCCCEEEEeCCCeEEEeCccc
Confidence 99876 3567799999999999999999999999986421 46899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecC-CceEEEEEEEEecCCCCc----hHHHHHHHHHHHHhcCCCCCc
Q 003327 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ-GELVILVAFIVLKEKKTS----SEIFLSSIKSWVSSKLPLAMI 245 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~ 245 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++..+. ..++.++++++++++... .....++|+++++++||.|++
T Consensus 404 d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 483 (521)
T 3l8c_A 404 FQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMM 483 (521)
T ss_dssp GBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGS
T ss_pred ceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccC
Confidence 999999999999999999999999999999987654 345678899998865322 123467899999999999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhccccccc
Q 003327 246 PNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
|..++++++||+|++|||||++|++.+..+
T Consensus 484 P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 484 PSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp CSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred CeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 999999999999999999999999877543
No 18
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.6e-39 Score=364.77 Aligned_cols=243 Identities=28% Similarity=0.431 Sum_probs=118.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+++++++|.||+||++++++...... ........++|+|+++++++|+
T Consensus 323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~~~~~iG~p~~~~~v~i~ 397 (570)
T 4gr5_A 323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA-----GDLSGTALPIGVPLAGKRAYVL 397 (570)
T ss_dssp GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG-----GGTTSSSCCCBEECTTEEEEEE
T ss_pred hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc-----cccCCCccccceeeCCCEEEEE
Confidence 45789999999999999999999999998999999999999987766433211 1112245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003327 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+|+|++++.||+++|+.|.+.|...+... .++.+||+|||+|++++||.|+|+||+||
T Consensus 398 d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~-------~~~~~w~~TGDlg~~d~dG~l~~~GR~~d 470 (570)
T 4gr5_A 398 DDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG-------PGGERMYRTGDLARRRADGVLEYVGRADD 470 (570)
T ss_dssp CTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCC-------SSCCEEEEEEEEEEECTTSCEEEEEC---
T ss_pred CCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCC-------CCCCEEEeCCCeEEECCCCeEEEEcccCC
Confidence 9876 3567799999999999999999999999998754321 12468999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003327 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.|||++|.+||.|.+|+|++.++...++.+++++++..... ....++|+++++++||.|++|..+++
T Consensus 471 ~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~ 548 (570)
T 4gr5_A 471 QVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVP 548 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEE
Confidence 9999999999999999999999999999999888777788899988764321 22346899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003327 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++|||+|++|++.
T Consensus 549 v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 549 VDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------
T ss_pred cccCCCCCCcCcchHhhhcc
Confidence 99999999999999999864
No 19
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=9.1e-38 Score=349.74 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=199.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+ +..++|.||+||++ .+. ..+ .....++|.|.+++++++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~-~~~-~~~----------~~~~~~~g~p~~~~~~~i 334 (504)
T 1t5h_X 268 SLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAM-NSL-YMR----------QPKTGTEMAPGFFSEVRI 334 (504)
T ss_dssp CCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTE-EEE-EEE----------SCSSSSEEBCCTTCCEEE
T ss_pred cccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccc-ccc-ccc----------CCCCCccccCCCCCceeE
Confidence 34689999999999999999999999998 57899999999983 222 111 114567899999999999
Q ss_pred ecCCC------CCCCCCeEEEc-cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003327 94 VESDT------VKPDEGEIYAG-GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 94 ~d~~~------~~~~~Gel~i~-g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|.++ +.++.|||+|+ |+.++.||+++|+.|.+.|. ++||+|||+|++++||.|+|+
T Consensus 335 ~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~----------------~g~~~TGDlg~~~~dG~l~~~ 398 (504)
T 1t5h_X 335 VRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ----------------DGWYRTSDVAVWTPEGTVRIL 398 (504)
T ss_dssp ECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEEE
T ss_pred EeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhc----------------CCccccCcEEEECCCceEEEe
Confidence 98654 35678999999 99999999999999998882 479999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCc
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~ 245 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++.+.... .++|++++++ +||.|++
T Consensus 399 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~ 475 (504)
T 1t5h_X 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKR 475 (504)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGS
T ss_pred CcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCccccc
Confidence 99999999999999999999999999999999999999888888999999987654322 3678999998 9999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003327 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|+.++++++||+|++|||+|++|++.+
T Consensus 476 P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 476 PKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp CSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred ceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 999999999999999999999998754
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=8.1e-38 Score=359.70 Aligned_cols=242 Identities=23% Similarity=0.314 Sum_probs=202.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... .......++|+|+++++++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~gs~G~p~~g~~v~ 454 (663)
T 1ry2_A 381 HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG------VTPMKPGSASFPFFGIDAV 454 (663)
T ss_dssp CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT------CCCCCTTCCCEECTTCCEE
T ss_pred CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC------CcccCCCccccCcCCCeEE
Confidence 46899999999999999999999999874 389999999999987655422100 0123567899999999999
Q ss_pred EecC-CCC---C-CCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003327 93 LVES-DTV---K-PDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 93 i~d~-~~~---~-~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
|+|+ ++. . ++.|||+|+| |++++|||++|+.+.+.|... ..+||+|||+|++++||+++|
T Consensus 455 i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~-------------~~g~y~TGDlg~~d~dG~l~i 521 (663)
T 1ry2_A 455 VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP-------------YPGYYFTGDGAAKDKDGYIWI 521 (663)
T ss_dssp EECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS-------------STTSEEEEEEEEECTTCCEEE
T ss_pred EEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC-------------CCCEEEcCCEEEEcCCCCEEE
Confidence 9987 553 2 5679999999 589999999998777666421 257999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC---c-hH---HHHHHHHHHHHh
Q 003327 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT---S-SE---IFLSSIKSWVSS 238 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~-~~---~~~~~l~~~l~~ 238 (829)
+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++++.. . .+ .+.++|++++++
T Consensus 522 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 601 (663)
T 1ry2_A 522 LGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRK 601 (663)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHH
T ss_pred EeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777788999999876543 1 11 346789999999
Q ss_pred cCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccc
Q 003327 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
.||.|++|..++++++||+|++|||+|++|++.+...
T Consensus 602 ~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 602 DIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred hCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 9999999999999999999999999999999887653
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.3e-37 Score=342.62 Aligned_cols=223 Identities=23% Similarity=0.376 Sum_probs=179.6
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003327 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++|||++++++.+++.+. +++++|.||+||++..++...... ......++|+|+++++++++|++
T Consensus 274 ~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~p~~~~~~~i~d~~ 344 (501)
T 3ipl_A 274 YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEM-------LHARPDTVGMPSANVDVKIKNPN 344 (501)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHH-------HHHCTTCCBEECTTCEEEEESCC
T ss_pred CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccc-------cccCCCCCCCCCCCcEEEEecCC
Confidence 389999999999999999999874 789999999999986554322110 01245679999999999999875
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003327 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
+++.|||+|+|+++++||+++|+.+.. | .++||+|||+|+++++|.++|+||.||+||++|
T Consensus 345 --~~~~GEl~v~g~~~~~gY~~~~~~t~~-~----------------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 405 (501)
T 3ipl_A 345 --KEGHGELMIKGANVMNGYLYPTDLTGT-F----------------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGG 405 (501)
T ss_dssp --SSCCEEEEEESTTSCSCCSBSTTCCCS-E----------------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSS
T ss_pred --CCCccEEEEeccchhhhhCcChhhcch-h----------------cCCceecCCEEEEcCCCeEEEEccccceEEECC
Confidence 567799999999999999999998876 4 257999999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003327 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
+||+|.|||++|.+||+|.+|+|++.+++..++.++++++..... ..++|+++++++||.|++|..++++++||+
T Consensus 406 ~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 480 (501)
T 3ipl_A 406 ENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI-----SKAQLIAYLSKHLAKYKVPKHFEKVDTLPY 480 (501)
T ss_dssp CEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-----CHHHHHHHHHHHSCGGGSCSEEEECSSCC-
T ss_pred EEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC-----CHHHHHHHHHhhCccccCCCEEEEecccCC
Confidence 999999999999999999999999999988888888988875432 235789999999999999999999999999
Q ss_pred CCCCCcchhhhccccc
Q 003327 258 TSSGKVDYASLSASTS 273 (829)
Q Consensus 258 t~~GKi~r~~l~~~~~ 273 (829)
|++|||||++|++...
T Consensus 481 t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 481 TSTGKLQRNKLYREGH 496 (501)
T ss_dssp ----------------
T ss_pred CCCCCEeHHHHhhccc
Confidence 9999999999998654
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.9e-37 Score=343.76 Aligned_cols=226 Identities=28% Similarity=0.440 Sum_probs=193.8
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003327 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++|||++++++.+++.+.+ +++++|.||+||++..++..... .....++|+|+++++++|+|++
T Consensus 300 ~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~ 369 (529)
T 2v7b_A 300 VAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG---------AVEYGTTGRPVPGYEIELRDEA 369 (529)
T ss_dssp CCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT---------CCCTTSCCEECTTCEEEEECTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC---------CCccCCcccCCCCCEEEEECCC
Confidence 4899999999999999999999987 78999999999996554432111 1245689999999999999977
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003327 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ +.++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+++++++|.++|+||.||+||
T Consensus 370 g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~----------------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 433 (529)
T 2v7b_A 370 GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL----------------GEWIRSGDKYCRLPNGCYVYAGRSDDMLK 433 (529)
T ss_dssp SCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEEEEEGGGCBC
T ss_pred CCCCCCCCccEEEEecCCcccccCCChHHHHHhhh----------------cCCcccCceEEECCCccEEEeCccCCeEE
Confidence 6 3567799999999999999999999988883 47999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003327 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|+||+|.|||++|.+||+|.+|+|++. +...+..+++++++.......+...++|+++++++||.|++|..++++++
T Consensus 434 ~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 512 (529)
T 2v7b_A 434 VSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDD 512 (529)
T ss_dssp ----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESC
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEecc
Confidence 99999999999999999999999999998 55566788999998765432333456899999999999999999999999
Q ss_pred ccCCCCCCcchhhhcc
Q 003327 255 LPMTSSGKVDYASLSA 270 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~ 270 (829)
||+|++||++|++|++
T Consensus 513 lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 513 LPKTATGKIQRFKLRE 528 (529)
T ss_dssp CCBCTTSCBCHHHHHC
T ss_pred CCCCCccchhHHhHhh
Confidence 9999999999999975
No 23
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-37 Score=352.10 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=165.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc--cCCCCccccccccCCcEEE
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++.+++ +.+ +++++|.||+||++..++............ .......++|+|+++++++
T Consensus 290 ~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 367 (541)
T 1v25_A 290 HRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 367 (541)
T ss_dssp CCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred CcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEE
Confidence 467899999999999999999999 555 889999999999987766432211000000 0001346899999999999
Q ss_pred EecCCCCC----C-CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003327 93 LVESDTVK----P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~~----~-~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++.+ + ..|||+|+|++++.||+++|+.|++.|.. ++||+|||+|+++++|.|+|+|
T Consensus 368 i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~---------------~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 368 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP---------------DGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp EECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT---------------TSCEEEEEEEEECTTCCEEEEE
T ss_pred EECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC---------------CCCeEcCCEEEEcCCceEEEee
Confidence 99987632 2 46999999999999999999999988842 5799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcC
Q 003327 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIP 246 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p 246 (829)
|+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++... ....+++++++++ +||.|++|
T Consensus 433 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----~~~~~~l~~~~~~~~L~~~~~P 508 (541)
T 1v25_A 433 RLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE----KPTPEELNEHLLKAGFAKWQLP 508 (541)
T ss_dssp ESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------CCCTTTSC
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCC----CCCHHHHHHHHHhccCccccCC
Confidence 999999999999999999999999999999999999988777888999887621 1223578888888 89999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhcccccc
Q 003327 247 NRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
..++++++||+|++|||+|++|++.+..
T Consensus 509 ~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 509 DAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp SBC--------------CCTTHHHHSTT
T ss_pred cEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 9999999999999999999999987653
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6e-38 Score=351.93 Aligned_cols=230 Identities=22% Similarity=0.349 Sum_probs=111.3
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003327 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.++.+|++ ++.+.+.+.+|+++++|.||+||++++++...... ...++|+|+++++++
T Consensus 267 ~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 267 APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD----------RPKSAGRPLFWRTVA 333 (509)
T ss_dssp CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG----------STTSCCEECTTCEEE
T ss_pred cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc----------CCCcccccCCCcEEE
Confidence 45668899999999997 88899999999999999999999998776543221 233589999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ ++++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|+++++|.++|+||.
T Consensus 334 i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~----------------~g~~~TGDl~~~~~dG~l~~~GR~ 397 (509)
T 3ivr_A 334 VVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR----------------NGWHHTGDMGRFDADGYLFYAGRA 397 (509)
T ss_dssp EECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG----------------GGSEEEEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh----------------cCCcccccEEEECCCceEEEeCCC
Confidence 999876 3567899999999999999999999998883 579999999999999999999999
Q ss_pred --CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003327 170 --DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 170 --dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.++.. ...++|+++++++||.|++|.
T Consensus 398 d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~~l~~~L~~~~~P~ 474 (509)
T 3ivr_A 398 PEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES---IAADALAEFVASLIARYKKPK 474 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC---CCHHHHHHHHHhhCcccCCCc
Confidence 999999999999999999999999999999999988877788889988775432 234689999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003327 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++|||||++|++.+..
T Consensus 475 ~i~~v~~lP~t~~GKidr~~Lr~~~~~ 501 (509)
T 3ivr_A 475 HVVFVEALPKDAKGAIDRAAVKTAHGQ 501 (509)
T ss_dssp ---------------------------
T ss_pred EEEEecCCCCCCCCCccHHHHHHHHhh
Confidence 999999999999999999999987654
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=9.9e-38 Score=353.16 Aligned_cols=234 Identities=22% Similarity=0.268 Sum_probs=110.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.++...++|.||+||+++.++..... .....++|+|+++++++|
T Consensus 303 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~~~~~~~~~i 373 (550)
T 3rix_A 303 KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---------DDKPGAVGKVVPFFEAKV 373 (550)
T ss_dssp GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT---------CCCTTEEEEECTTCEEEE
T ss_pred ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC---------CCCCCCcccccCCcEEEE
Confidence 34689999999999999999999999998655699999999999776643221 225678999999999999
Q ss_pred ecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 94 VESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++. ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||.
T Consensus 374 ~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 438 (550)
T 3rix_A 374 VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID---------------KDGWLHSGDIAYWDEDEHFFIVDRL 438 (550)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEC---
T ss_pred EeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcC---------------CCCCeecCcEEEEeCCceEEEEecc
Confidence 98543 4577899999999999999999999988773 3679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCC-cCCe
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM-IPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~ 248 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++++.+... ..++++++++++++.++ +|..
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~l~~~~~~~l~~~~~~~~~ 515 (550)
T 3rix_A 439 KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM---TEKEIVDYVASQVTTAKKLRGG 515 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC---CHHHHHHHHHHhcccccccCCc
Confidence 9999999999999999999999999999999999888888888999988765332 23678899999999885 5557
Q ss_pred EEEeCcccCCCCCCcchhhhcccccc
Q 003327 249 FVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++++||+|++|||||++|++++..
T Consensus 516 i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 516 VVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp --------------------------
T ss_pred eEEEeecCCCCCcceeHHHHHHHHHh
Confidence 99999999999999999999987653
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.7e-37 Score=349.11 Aligned_cols=248 Identities=24% Similarity=0.365 Sum_probs=117.0
Q ss_pred cchhhhhcc--CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccc
Q 003327 4 VLPALQSQH--NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP 81 (829)
Q Consensus 4 l~~~l~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (829)
++|++.+.. ...++++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.++...... .....+
T Consensus 278 ~~P~~l~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~ 348 (562)
T 3ite_A 278 IVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP--------DSDTRC 348 (562)
T ss_dssp ECHHHHHHHTCCGGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT--------TSCTTE
T ss_pred cCHHHHhhcccCccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC--------CCCCcc
Confidence 455555432 345688999999999999999999998865 789999999999987766543221 124567
Q ss_pred cccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE
Q 003327 82 IGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 157 (829)
Q Consensus 82 ~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 157 (829)
+|+|+++++++++|++. ++++.|||+|+|++++.|||++|+.+...|.. +++||+|||+|++
T Consensus 349 ~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~--------------g~~w~~TGDlg~~ 414 (562)
T 3ite_A 349 IGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDIN--------------GRKMYRTGDIVRM 414 (562)
T ss_dssp EEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEET--------------TEEEEEEEEEEEE
T ss_pred ccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCC--------------CCEEEecCCEEEE
Confidence 99999999999998653 45778999999999999999999988755432 4679999999999
Q ss_pred ccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCC-CCeeEEEEEEeecCCceEEEEEEEEecCCCCc----------hH
Q 003327 158 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH-PDVVDTAVVSHKHQGELVILVAFIVLKEKKTS----------SE 226 (829)
Q Consensus 158 ~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------~~ 226 (829)
++||+|+|+||+||+||++|+||+|.|||++|.++ +.+.+++|+..+++..++..++.++....... .+
T Consensus 415 d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 494 (562)
T 3ite_A 415 DADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYK 494 (562)
T ss_dssp CTTSCEEEEEEC--------------------------------------------------------------------
T ss_pred cCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchh
Confidence 99999999999999999999999999999999998 77778888877776555544444443322111 11
Q ss_pred HHHHHHHHHHHhcCCCCCcCCeEEEeCcccCC-CCCCcchhhhcccccc
Q 003327 227 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT-SSGKVDYASLSASTSF 274 (829)
Q Consensus 227 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GKi~r~~l~~~~~~ 274 (829)
...++|+++++++||.|++|+.++++++||+| ++|||||++|++++..
T Consensus 495 ~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 495 EINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp -------------------------------------------------
T ss_pred hHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 23458999999999999999999999999998 8999999999987753
No 27
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=7.2e-38 Score=353.51 Aligned_cols=231 Identities=25% Similarity=0.385 Sum_probs=111.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEEE
Q 003327 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i 93 (829)
.++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... ......++|+|+ ++++++|
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~~i 374 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDS--------DEQIFTTQGRPISSDDEIKI 374 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSC--------HHHHHHCCCEESCTTCEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCc--------hhhccCCCceecCCCcEEEE
Confidence 3478999999999999999999999988 78999999999987544322110 011346789996 8999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003327 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||.|
T Consensus 375 ~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~---------------~~g~~~TGDlg~~~~dG~l~~~GR~d 439 (544)
T 3o83_A 375 VDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFD---------------EDNYYYSGDLVQRTPDGNLRVVGRIK 439 (544)
T ss_dssp ECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBC---------------TTCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCC---------------CCCCeEcCCEEEEcCCCCEEEEeecC
Confidence 99766 4577899999999999999999999999884 36899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeE
Q 003327 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+.. ....++++++++ .||.|++|..+
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~----~~~~~l~~~~~~~~l~~~~~P~~i 515 (544)
T 3o83_A 440 DQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE----LKAVVLRRHLMELGIAQYKLPDQI 515 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC----CCHHHHHHHHHhCCCCcccCCcEE
Confidence 9999999999999999999999999999999998887788889999876532 223578888888 79999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++++.
T Consensus 516 ~~v~~lP~t~~GKi~r~~L~~~~~ 539 (544)
T 3o83_A 516 KLIESLPLTAVGKVDKKQLRSILN 539 (544)
T ss_dssp ------------------------
T ss_pred EEeccCCCCCCCCCcHHHHHHHHh
Confidence 999999999999999999998764
No 28
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.8e-37 Score=370.26 Aligned_cols=241 Identities=26% Similarity=0.336 Sum_probs=117.8
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+|+++++|.||+||++.+++....... ........++|+|+++++++|
T Consensus 340 ~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~i 415 (979)
T 3tsy_A 340 KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK----EPFPVKSGACGTVVRNAEMKI 415 (979)
T ss_dssp TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSS----SCCCCCTTCCCEECSSCEEEE
T ss_pred CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCC----CccccCCCCcCcccCCcEEEE
Confidence 3468999999999999999999999999999999999999999876654321110 011235678999999999999
Q ss_pred ecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003327 94 VESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++. ++++.|||+|+|+++++||+++|+.|.+.|. .++||+|||+|++++||.|+|+||+
T Consensus 416 ~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 480 (979)
T 3tsy_A 416 VDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETID---------------KDGWLHTGDIGLIDDDDELFIVDRL 480 (979)
T ss_dssp ECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEEEES
T ss_pred EeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhcc---------------CCCcEEcCCEEEEcCCceEEEecCC
Confidence 98543 4567899999999999999999999998884 3679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++++...... ...++|+++++++||.|++|..+
T Consensus 481 dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~p~~i 557 (979)
T 3tsy_A 481 KELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE---LSEDDVKQFVSKQVVFYKRINKV 557 (979)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC---CCHHHHHHHHHHhcccccCCeEE
Confidence 999999999999999999999999999999999888777788899998765432 22367999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~ 276 (829)
+++++||+|++|||||++|++.+....
T Consensus 558 ~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 558 FFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ---------------------------
T ss_pred EEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 999999999999999999998776443
No 29
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=100.00 E-value=3.4e-32 Score=293.68 Aligned_cols=319 Identities=18% Similarity=0.339 Sum_probs=254.5
Q ss_pred cccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC----------ceeeceEE
Q 003327 460 GFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG----------RIECSAAV 524 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~----------~~~~~~~~ 524 (829)
..++++|+++++.... ++|++ .++.||+++.++.|+++|++||+++|++.... .+. ..+
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v----~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~ 99 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL----ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS--GGV 99 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEE--EEE
T ss_pred CcceEEeEEecCCCccccceeeccEE----ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccc--cCc
Confidence 4678999999986642 58888 68999999999999999999999999988743 232 223
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc-
Q 003327 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF- 603 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~- 603 (829)
..+++.+|+++.++.|+++|++||+++|++.....+...|++.+ +.+|+++.++.|+++|+++|+.+|++.......
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEET--TEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEEC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 33457999999999999999999999999998877777777764 799999999999999999999999998765443
Q ss_pred ----ccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCCEEEEEeeCCeEEE
Q 003327 604 ----GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 604 ----~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
+.|++.+ +.+|+++.+|.++++|+++ |+.+|+.....+.. ....+...++.+|+++.++.+++
T Consensus 178 ~~~~~~~~~~~--~~v~~g~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 178 LRGESAPTTAF--GAAVVGGDNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp -CCCCCCEEET--TEEEECCTTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred ecCCCCcEEEC--CEEEEEcCCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 6677765 8999999999999999988 99999987653311 11122235789999999999999
Q ss_pred Ec-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCcccccccccccccccccccc
Q 003327 671 LD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
+| .+|+++|+...... ..+ ...++.+|+++.+|.|+++|.++|+++|+.. ........+..
T Consensus 254 ~d~~tG~~~w~~~~~~~--~~~---~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~------------ 316 (376)
T 3q7m_A 254 LDLRSGQIMWKRELGSV--NDF---IVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL------------ 316 (376)
T ss_dssp EETTTCCEEEEECCCCE--EEE---EEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE------------
T ss_pred EECCCCcEEeeccCCCC--CCc---eEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE------------
Confidence 99 89999999876542 222 2347899999999999999999999999987 33333333322
Q ss_pred CCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceEECCEEEEeeeCCeEEEEec
Q 003327 749 SIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVMIGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~vg~~~g~l~~~d~ 821 (829)
.++.+|+++.+|.|+++|..++ +..+.+.+ .+.+.++|++.++.||+++.+|.||+||.
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG-------------~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDG-------------RFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTC-------------CEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred -ECCEEEEEeCCCeEEEEECCCC-------------cEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 2789999999999999999876 55666666 45677789999999999999999999974
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2e-34 Score=329.58 Aligned_cols=242 Identities=17% Similarity=0.187 Sum_probs=191.5
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCc-----------------
Q 003327 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPS----------------- 70 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~----------------- 70 (829)
...++++||.+++|||++++++.+++.+.++ +++++|.||+||++..++.........
T Consensus 294 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (576)
T 3gqw_A 294 AELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA 373 (576)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCC
T ss_pred ccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccc
Confidence 3456899999999999999999999998874 689999999999998776543211000
Q ss_pred --ccccCCCCccccccccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCC
Q 003327 71 --ILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGS 145 (829)
Q Consensus 71 --~~~~~~~~~~~~G~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 145 (829)
..........++|+|+++++++|+|+++ ++++.|||+|+|+++++||+++|+.+.+.| .
T Consensus 374 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~----------------~ 437 (576)
T 3gqw_A 374 PGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA----------------A 437 (576)
T ss_dssp CCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH----------------H
T ss_pred cCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCcccccccc----------------C
Confidence 0000001234899999999999999776 356679999999999999999987766544 3
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCch
Q 003327 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS 225 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (829)
++||+|||+|++ +||.++|+||.||+||++|+||+|.|||++|.+||.|.+++|++........ ++++..... .
T Consensus 438 ~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~--~~~~~~~~~---~ 511 (576)
T 3gqw_A 438 TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI--ILQIQCRIS---D 511 (576)
T ss_dssp HSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE--EEEEECCCC---C
T ss_pred CCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCccE--EEEEEEecC---c
Confidence 689999999998 7999999999999999999999999999999999999988777766654433 333333322 2
Q ss_pred HHHHHHHHHHHHhcC-CCCCcCCeEEEeC--cccCCCCCCcchhhhcccccccc
Q 003327 226 EIFLSSIKSWVSSKL-PLAMIPNRFVFMD--SLPMTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 226 ~~~~~~l~~~l~~~l-~~~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~ 276 (829)
+...+++++++++.+ +.+++|..+.+++ +||+|++|||+|++|++.+....
T Consensus 512 ~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 565 (576)
T 3gqw_A 512 EERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAY 565 (576)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHh
Confidence 234467777787777 6789999998887 89999999999999998876543
No 31
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=5.4e-34 Score=326.60 Aligned_cols=250 Identities=18% Similarity=0.158 Sum_probs=191.8
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCcc----------------
Q 003327 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSI---------------- 71 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~---------------- 71 (829)
...++++||.+++|||++++++.+++.+.++ +++++|.||+||+++.++..........
T Consensus 284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (590)
T 3kxw_A 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFA 363 (590)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBC
T ss_pred cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeec
Confidence 3456899999999999999999999998863 4589999999999987765332110000
Q ss_pred --cccCCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCC
Q 003327 72 --LEMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGS 145 (829)
Q Consensus 72 --~~~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 145 (829)
.........++|+|+++ ++|+|++. ++++.|||+|+|++++.||+++|+.|++.|...+... ..+
T Consensus 364 ~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~-------~~g 434 (590)
T 3kxw_A 364 DDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDD-------ERS 434 (590)
T ss_dssp CTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC----------
T ss_pred cCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCC-------CCC
Confidence 00112245789999998 77788763 3567799999999999999999999999997643221 113
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHH-hCCCCee--EEEEEEeecCCceEEEEEEEEecCCC
Q 003327 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVV--DTAVVSHKHQGELVILVAFIVLKEKK 222 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~ 222 (829)
.+||+|||+|+++ +|.|+|+||+||+||++|+||+|.|||++| ..+|.|. +|+|++.+++. +..+++++++....
T Consensus 435 ~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~ 512 (590)
T 3kxw_A 435 AIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRF 512 (590)
T ss_dssp CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTT
T ss_pred CcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccc
Confidence 4599999999998 999999999999999999999999999999 8899998 78888887765 56778888877653
Q ss_pred CchHHHHHHHHHHHHhcCCC-CCcCC-eE--EEeCcccCCCCCCcchhhhcccccc
Q 003327 223 TSSEIFLSSIKSWVSSKLPL-AMIPN-RF--VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~~-~~~p~-~~--~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.. +...+++++++++.++. +++|. .+ +.+++||+|++|||+|++|++.+..
T Consensus 513 ~~-~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 513 MD-DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred cc-chhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 21 22345566666666664 56664 34 4447999999999999999987653
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.9e-33 Score=295.75 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=172.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003327 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+. +++++|.||+||++..++...... .....+|.|.|++.+.+
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~~~---------~~~g~~~~~~pgv~~~~ 212 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKALNG---------PEASELYVFLPGIQYGV 212 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEECSS---------TTCCSCEEECTTCEEEE
T ss_pred cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeecccccc---------cccceeeccCCCeEEEe
Confidence 4568899999999999999999999875 789999999999987776543321 13456889999998887
Q ss_pred ecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003327 94 VESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 94 ~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+ .|||+++|+.. .++||+|||+|+++++| ++|+||+||+|
T Consensus 213 ~~-------~Gel~~~g~~~-------------------------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~I 253 (358)
T 4gs5_A 213 DE-------RGCLHISGAVT-------------------------------NGQTVQTNDLVEIHGNA-FQWIGRADNVI 253 (358)
T ss_dssp CT-------TSEEEEESGGG-------------------------------TTCCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred cC-------cCceEEecccc-------------------------------cCcceecCCccccccCc-eEEcccccCeE
Confidence 54 39999987521 25799999999999888 77889999999
Q ss_pred EECCeeeChHHHHHHH---hCCCCeeEEEEE-EeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003327 174 KINGQRMALEEIEHTL---RGHPDVVDTAVV-SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|++|+||+|.|||++| ..||.|.+|+|+ ..+++..++.++++++.... +...++|+++++++||.|++|+.+
T Consensus 254 k~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~----~~~~~~l~~~l~~~L~~~~~P~~i 329 (358)
T 4gs5_A 254 NSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP----EALTERLTAEIRSRVSTYENPKHI 329 (358)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC----HHHHHHHHHHHHHHSCGGGSCSCE
T ss_pred EECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC----CcCHHHHHHHHHhhCCCCCCceEE
Confidence 9999999999999877 468999998776 56777778888888875543 344568999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003327 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 330 ~~v~~lP~t~~GKi~R~~L~~~l~ 353 (358)
T 4gs5_A 330 YFAKAFAKTQTDKIDKRATFQKLS 353 (358)
T ss_dssp EEESSCCBCTTSCBCHHHHHHHTC
T ss_pred EEECCcCCCCCCChhHHHHHHHhh
Confidence 999999999999999999987654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=7.5e-30 Score=280.11 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=166.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003327 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.++...+.. ...+|.|.+++.++|+|
T Consensus 204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----------~~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 RETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQE-----------QNGMHFWEDCYLVEIID 271 (436)
T ss_dssp TSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEEEEEEECTT-----------CSSEEECTTTEEEEEEC
T ss_pred ccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCCeeEEecCC-----------CCeeEEccCceEEEEEE
Confidence 478999999999999999999999988 899999999999965534333321 12367788899999998
Q ss_pred C-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC------c---
Q 003327 96 S-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG------D--- 162 (829)
Q Consensus 96 ~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G------~--- 162 (829)
+ ++ ++++.|||+|+|+ +.+.| ..+||+|||+|+++++| .
T Consensus 272 ~~~g~~~~~g~~Gel~v~~~------------~~~~~----------------~~~~y~TGDl~~~~~~gc~cG~~~~~i 323 (436)
T 3qov_A 272 PETGEPVPEGEIGELVLTTL------------DREMM----------------PLIRYRTRDLTRILPGKCPCGRTHLRI 323 (436)
T ss_dssp TTTCSBCSTTCCEEEEEEES------------SCCSS----------------CCCSEEEEEEECEECSCCTTCCCSCEE
T ss_pred CCCCCCCCCCCceEEEEecc------------CcCCc----------------eEEEEEcCCEEEEcCCCCCCCCCcccc
Confidence 4 44 4567899999883 22222 25789999999999998 5
Q ss_pred EEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCC
Q 003327 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLP 241 (829)
Q Consensus 163 l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~ 241 (829)
++|+||.||+||++|+||+|.+||++|.+||.|.+++|++.+++..+..++++|++. +... .....+++++++++.|+
T Consensus 324 l~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 324 DRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLK 402 (436)
T ss_dssp CCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999988877788899999988 4322 22234567777777888
Q ss_pred CC-CcCCeEEEeC--cccCCCCCCcchhhhc
Q 003327 242 LA-MIPNRFVFMD--SLPMTSSGKVDYASLS 269 (829)
Q Consensus 242 ~~-~~p~~~~~~~--~lP~t~~GKi~r~~l~ 269 (829)
.+ ++|..+.+++ +||+|+ ||++|...+
T Consensus 403 ~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~ 432 (436)
T 3qov_A 403 DEILVTPKVKLVKKGSLPQSE-GKAVRVKDL 432 (436)
T ss_dssp HHHSSCCEEEEECTTCCC--------CEEEC
T ss_pred HhcCCceEEEEeCCCcccCcC-CcceEEEec
Confidence 77 8999999999 999999 999987554
No 34
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.96 E-value=3e-27 Score=265.99 Aligned_cols=323 Identities=17% Similarity=0.266 Sum_probs=243.3
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCce-----------eece
Q 003327 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRI-----------ECSA 522 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~-----------~~~~ 522 (829)
....++++|+++++.. +.++|++ .++.||+++. ++.|+++|+ .||+++|+++..... ...+
T Consensus 36 ~~~~l~~~W~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 111 (571)
T 2ad6_A 36 NVKNVKAAWSFSTGVLNGHEGAPLV----IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGL 111 (571)
T ss_dssp TGGGCEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCC
T ss_pred cccCccEEEEEECCCCCCcccccEE----ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccccc
Confidence 3456889999999754 6789998 5889999998 899999999 999999998765421 1123
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCe
Q 003327 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYR 591 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~ 591 (829)
.+ +++.||+++.++.|+++|++||+++|++.... .+.++|++.+ +.||+++. ++.|+++|++||+
T Consensus 112 ~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 112 AY--GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC--CEEEEEecCCccCCCCEEEEEECCCCc
Confidence 33 45799999999999999999999999998765 4566777764 78999876 6899999999999
Q ss_pred EEEeeccCCcc--------------------------------------cccceeecCCCEEEEEecC------------
Q 003327 592 CVYKLPCGGSI--------------------------------------FGSPAIDEVHDVLYVASTS------------ 621 (829)
Q Consensus 592 ~~w~~~~~~~~--------------------------------------~~~~~~~~~~~~l~v~t~~------------ 621 (829)
.+|++...... +..+.++.+.+.||+++.+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 99998764321 1235566667899998853
Q ss_pred ----CeEEEEEccCCCceEEEeeccCCc------ceeeeeeee---cCC---EEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003327 622 ----GRLTAISVKALPFHTLWLHELEVP------AFASLCITS---ANR---HVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 622 ----g~l~~~~~~~~~g~~~w~~~~~~~------~~~s~~~~~---~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
+.|+++|+++ |+.+|+++.... ...++.+.. +++ .+++++.+|.++++| .+|+++|+.+..
T Consensus 268 ~~y~~~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~ 345 (571)
T 2ad6_A 268 NKWTMTIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp CTTTTEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred ceeEEEEEEEecCC--CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence 3599999998 999999976421 123333332 232 467788899999999 999999998754
Q ss_pred C--------------cee--------------ecCcc---------ccc-CCCeEEEEee--------------------
Q 003327 685 G--------------PIF--------------AGPCT---------SFA-LPSQVLICSR-------------------- 706 (829)
Q Consensus 685 ~--------------~~~--------------~~~~~---------~~~-~~~~i~~~t~-------------------- 706 (829)
. ++. ..|.. ..+ ..+.+|+.+.
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 3 111 11100 111 2356777643
Q ss_pred -----------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 707 -----------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 707 -----------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+|.|+++|..+|+++|+++........+.... ++.+|+++.+|.|+++|.+
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~------------gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK------------GGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEECTTSEEEEEETT
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEEC------------CCEEEEEcCCCeEEEEECC
Confidence 47899999999999999987665444433322 7899999999999999998
Q ss_pred cCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCe
Q 003327 770 LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~ 815 (829)
++ +.+|++.+.+.+..+|+. .++++|+++.+|.
T Consensus 494 tG-------------~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 494 DG-------------KELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp TC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CC-------------CEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence 77 778888888888888888 7999999987653
No 35
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.96 E-value=2.8e-27 Score=266.23 Aligned_cols=325 Identities=17% Similarity=0.253 Sum_probs=241.1
Q ss_pred Cccccccccccccccccc----cccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceE
Q 003327 457 NKRGFIQELWKVHMESCV----DASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAA 523 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~~----~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~ 523 (829)
.....++++|+++++... .++|++ .++.||+++.++.|+++|+.||+++|++....... ..+.
T Consensus 39 ~n~~~~~~~W~~~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a 114 (582)
T 1flg_A 39 DNVFKLTPAWSYSFGDEKQRGQESQAIV----SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA 114 (582)
T ss_dssp TTGGGCEEEEEEECCTTCCSCCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE
T ss_pred cccCCCcEEEEEECCCccCCcceeccEE----ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE
Confidence 344578899999998643 578988 58899999985569999999999999998764321 1223
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecC--CC--EEEEecc------CCeEEEEEcC
Q 003327 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAP--RQ--LIWCGSH------DHNLYALDFR 588 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~--~~--~i~~gs~------~g~l~~~d~~ 588 (829)
+ .++.||+++.++.|+++|++||+++|++.... .+.++|++.++ ++ .||+++. ++.|+++|++
T Consensus 115 ~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 115 I--YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp E--ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 3 45789999999999999999999999998764 34566776642 11 7888864 7899999999
Q ss_pred CCeEEEeeccC-----------------------------------------CcccccceeecCCCEEEEEecC------
Q 003327 589 NYRCVYKLPCG-----------------------------------------GSIFGSPAIDEVHDVLYVASTS------ 621 (829)
Q Consensus 589 tg~~~w~~~~~-----------------------------------------~~~~~~~~~~~~~~~l~v~t~~------ 621 (829)
||+.+|+.... +..+.++.++.+.+.||+++.+
T Consensus 193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCG
T ss_pred CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccC
Confidence 99999987542 1233456777778999998841
Q ss_pred ------------------CeEEEEEccCCCceEEEeeccCCc------ceeeeeeee----cC---CEEEEEeeCCeEEE
Q 003327 622 ------------------GRLTAISVKALPFHTLWLHELEVP------AFASLCITS----AN---RHVICCLVDGHVVA 670 (829)
Q Consensus 622 ------------------g~l~~~~~~~~~g~~~w~~~~~~~------~~~s~~~~~----~~---~~l~~~~~~g~i~~ 670 (829)
+.|+++|+++ |+.+|+++.... ...++.+.. ++ ..+++++.+|.+++
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~T--G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCC--CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence 5799999998 999999876422 112333332 23 26778889999999
Q ss_pred Ec-CCCCEEEEeecCCc--------------e--------------------eecCcc---------ccc-CCCeEEEEe
Q 003327 671 LD-SSGSIIWRCRTGGP--------------I--------------------FAGPCT---------SFA-LPSQVLICS 705 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~--------------~--------------------~~~~~~---------~~~-~~~~i~~~t 705 (829)
+| .+|+++|++..... + ...|.. ..+ ..+.+|+.+
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 99 99999999876431 0 011110 001 124566654
Q ss_pred e---------------------------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc
Q 003327 706 R---------------------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 706 ~---------------------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
. .|.|++||+.||+++|+.....+....+... .++
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agg 498 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------------AGN 498 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE------------TTT
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe------------CCC
Confidence 2 5789999999999999998765544333322 288
Q ss_pred EEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003327 753 LVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 753 ~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g 814 (829)
++++++.+|.|++||.++| +.+|++++++.+..+|+. .++++|++..+|
T Consensus 499 lvf~g~~dg~l~A~D~~tG-------------~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 499 LVFTGTGDGYFKAFDAKSG-------------KELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEEEECTTSEEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCcEEEEECCCC-------------CEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 9999999999999999987 788899999888888987 689999986554
No 36
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.96 E-value=5.6e-27 Score=262.52 Aligned_cols=325 Identities=15% Similarity=0.221 Sum_probs=239.7
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCce-----------eec
Q 003327 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRI-----------ECS 521 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~-----------~~~ 521 (829)
.+...++++|+++++.. +.++|++ .+++||+++. ++.|+++|+ .||+++|+++..... ...
T Consensus 35 ~nv~~l~~~W~~~~g~~~g~~~tP~v----~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g 110 (599)
T 1w6s_A 35 GNVKQLRPAWTFSTGLLNGHEGAPLV----VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRG 110 (599)
T ss_dssp TTGGGEEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCC
T ss_pred cccCCCcEEEEEECCCCCCceeccEE----ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccc
Confidence 34457889999999743 5689998 5889999998 889999999 999999999875431 112
Q ss_pred eEEeeCCcE----EEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEE
Q 003327 522 AAVLADFSQ----VVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALD 586 (829)
Q Consensus 522 ~~~~~~~~~----v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d 586 (829)
+.+.+.++. ||+++.|+.|+++|++||+++|++.... .+.+.|++.+ +.||+++. ++.|+++|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~--g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC--CEEEEEecccccCCCCeEEEEE
Confidence 334213455 9999999999999999999999988765 5667777764 78999874 78999999
Q ss_pred cCCCeEEEeeccCCc--------------------------------------ccccceeecCCCEEEEEecCC------
Q 003327 587 FRNYRCVYKLPCGGS--------------------------------------IFGSPAIDEVHDVLYVASTSG------ 622 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~--------------------------------------~~~~~~~~~~~~~l~v~t~~g------ 622 (829)
.+||+.+|++..... .+..+.++.+.+.||+++.++
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 999999999876432 223456777789999998763
Q ss_pred ----------eEEEEEccCCCceEEEeeccCCcc------eeeeeeee----cC---CEEEEEeeCCeEEEEc-CCCCEE
Q 003327 623 ----------RLTAISVKALPFHTLWLHELEVPA------FASLCITS----AN---RHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 623 ----------~l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~----~~---~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.|+++|+++ |+.+|+++..... ..++.+.. ++ ..++.++.+|.++++| .+|+++
T Consensus 269 ~r~gd~~y~~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GSCSCCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCCCccccceEEEEeCCC--CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 799999998 9999999865321 12333322 23 2466688899999999 999999
Q ss_pred EEeecCC--------------cee--------------ecCc---------cccc-CCCeEEEE----------------
Q 003327 679 WRCRTGG--------------PIF--------------AGPC---------TSFA-LPSQVLIC---------------- 704 (829)
Q Consensus 679 w~~~~~~--------------~~~--------------~~~~---------~~~~-~~~~i~~~---------------- 704 (829)
|..+... ++. ..|. ...+ ..+.+|+.
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 9876432 110 0000 0000 11222221
Q ss_pred -----------------e------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 705 -----------------S------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 705 -----------------t------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+ ..|.|++||+.||+++|+.+...+....+... .++++|+++.+|
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agg~vf~gt~dg 494 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT------------AGDLVFYGTLDG 494 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE------------TTTEEEEECTTS
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe------------cCCEEEEECCCC
Confidence 1 34789999999999999998664443333222 288999999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003327 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g 814 (829)
.|++||.++| +.+|++++++.+..+|+. .+|++|++...|
T Consensus 495 ~l~A~D~~tG-------------~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 495 YLKARDSDTG-------------DLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred eEEEEECCCC-------------CEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 9999999987 778888999888899988 789988876544
No 37
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=1.3e-29 Score=278.90 Aligned_cols=215 Identities=15% Similarity=0.217 Sum_probs=170.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003327 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+++||.+++|||++++++.+++.+.+ +++++|.||+||+++.+....+.. .....+.|.+++.++|+|+
T Consensus 211 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~----------~~~g~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 211 ESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVE----------TKDGPVIWEDHFYPEIIDP 279 (443)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTTEEEEEEECTT----------TCCSEEECTTTEEEEEECT
T ss_pred cCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhcCCeEEeccCC----------CCCceEEccCCeEEEEEcC
Confidence 57999999999999999999999888 789999999999854322222221 1112455778999999985
Q ss_pred C-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC-CcE-----EEE
Q 003327 97 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS-GDL-----VFL 166 (829)
Q Consensus 97 ~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G~l-----~~~ 166 (829)
+ + +.++.|||+|+|. +.+.| ..+||+|||+|+++++ |.+ +++
T Consensus 280 ~~g~~~~~G~~Gel~v~~~------------t~~~~----------------p~~~y~TGDl~~~~~~cG~~~~~l~~i~ 331 (443)
T 2y4o_A 280 VTGEVLPDGSQGELVFTSL------------TKEAM----------------PVIRYRTRDLTALLPPTARAMRRLAKIT 331 (443)
T ss_dssp TTCCBCCTTCCEEEEEEES------------SCSSS----------------CCSSEEEEEEECEECCSSSSSCEECCCC
T ss_pred CCCCCCCCCCceEEEEeCC------------CcccC----------------hhheeecCCEEEEcCCCCCCccccCccc
Confidence 4 3 3567899999873 22223 2468999999999999 987 899
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC--CCCchHHHHHHHHHHHHhcCCCCC
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~l~~~l~~~~ 244 (829)
||.||+||++|++|+|.+||++|.+||.|.+++++..+++..+..+++++++.+ +........+++++++++.|+.++
T Consensus 332 GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 411 (443)
T 2y4o_A 332 GRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMV 411 (443)
T ss_dssp EESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888777666678889998865 221122334678888888888774
Q ss_pred -cCCeEEEe--CcccCCCCCCcchhhhcc
Q 003327 245 -IPNRFVFM--DSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 245 -~p~~~~~~--~~lP~t~~GKi~r~~l~~ 270 (829)
+|..+.++ ++||+|++||++|+..++
T Consensus 412 ~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 412 GVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp CCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred CCceEEEEeCCCcccCccCCcceEEEecc
Confidence 88888877 599999999999987654
No 38
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.96 E-value=5e-27 Score=253.16 Aligned_cols=286 Identities=17% Similarity=0.332 Sum_probs=225.2
Q ss_pred CCCcEEEEEEcCCce-----eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC----------Ceeeeeeeeec
Q 003327 504 KRSSVLWEIKLEGRI-----ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC----------GEVKCQPVVDA 568 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~-----~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~----------~~~~~~~~~~~ 568 (829)
.++++.|+++.+... ..++++ .++.||+++.++.|+++|++||+++|++... ..+...+.+.
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL--ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS- 102 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-
T ss_pred CcceEEeEEecCCCccccceeeccEE--ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-
Confidence 357888998876432 234555 3568999999999999999999999998873 2344555554
Q ss_pred CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-
Q 003327 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF- 647 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~- 647 (829)
++.+|+++.++.|+++|.++|+.+|++.......+.|++.+ +.+|+++.++.|+++|.++ |+.+|++....+..
T Consensus 103 -~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~--~~v~v~~~~g~l~~~d~~t--G~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 103 -GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSD--GLVLIHTSNGQLQALNEAD--GAVKWTVNLDMPSLS 177 (376)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEET--TEEEEECTTSEEEEEETTT--CCEEEEEECCC----
T ss_pred -CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEEC--CEEEEEcCCCeEEEEECCC--CcEEEEEeCCCCcee
Confidence 48999999999999999999999999988877778888875 8999999999999999988 99999998765443
Q ss_pred --eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeEEEE
Q 003327 648 --ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 648 --~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
....+...++.+|+++.++.++++| .+|+.+|+.....+ +...| ...++.+|+++.+|.++++
T Consensus 178 ~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 178 LRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP---VVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp -CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC---EEETTEEEEECTTSCEEEE
T ss_pred ecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc---EEECCEEEEEecCcEEEEE
Confidence 0112223478999999999999999 89999999886543 22333 3347899999999999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec-c
Q 003327 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE-L 792 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~ 792 (829)
|.++|+++|+...... ..+. ..++.+|+++.+|.|+++|.+++ +..|... +
T Consensus 255 d~~tG~~~w~~~~~~~--~~~~-------------~~~~~l~~~~~~g~l~~~d~~tG-------------~~~w~~~~~ 306 (376)
T 3q7m_A 255 DLRSGQIMWKRELGSV--NDFI-------------VDGNRIYLVDQNDRVMALTIDGG-------------VTLWTQSDL 306 (376)
T ss_dssp ETTTCCEEEEECCCCE--EEEE-------------EETTEEEEEETTCCEEEEETTTC-------------CEEEEECTT
T ss_pred ECCCCcEEeeccCCCC--CCce-------------EECCEEEEEcCCCeEEEEECCCC-------------cEEEeeccc
Confidence 9999999999875432 1121 22789999999999999999876 4445544 5
Q ss_pred CCcccccceEECCEEEEeeeCCeEEEEecccccccc
Q 003327 793 QGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 793 ~~~~~~~~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.....++|++.++.||+++.+|.|+++|.++|++.+
T Consensus 307 ~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 307 LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp TTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 556778899999999999999999999999998753
No 39
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.96 E-value=1.9e-28 Score=259.32 Aligned_cols=321 Identities=19% Similarity=0.366 Sum_probs=243.4
Q ss_pred ccccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE
Q 003327 460 GFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 539 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~ 539 (829)
...+.+|+++++..+.++|++ |.++.||+++.++.|+++| .+|+++|.+..+.....++.+.. ++.+|+++.+
T Consensus 7 ~~g~~~W~~~~~~~~~~~~~~---d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~-- 79 (330)
T 3hxj_A 7 NDCKIKWEFLIGNSIDSSPIL---AKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK-DGTIYFGSDK-- 79 (330)
T ss_dssp -----CCTTTSCEEECCCCEE---CTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETT-TTEECCSSCE--
T ss_pred CCceEEEEEeCCCCcccCceE---ccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEec-CCcEEEecCc--
Confidence 456788999999999999988 4688999999988999999 89999998777665554555543 4689999866
Q ss_pred EEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe
Q 003327 540 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 619 (829)
Q Consensus 540 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t 619 (829)
|+++|. +|+.+|.+.........+.+. ++.+|+++.++.|+++|.+ |+.+|..........+++.+. ++.+|+++
T Consensus 80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt 154 (330)
T 3hxj_A 80 VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGTIYVGS 154 (330)
T ss_dssp EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSCEEEEC
T ss_pred EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCEEEEEc
Confidence 999995 999999887666555556655 5899999999999999988 999999887776677777764 57799999
Q ss_pred cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCC
Q 003327 620 TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS 699 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~ 699 (829)
.++.|+++|.+ |+.+|.+........++.. ..++.+|+++ ++++++|.+|+.+|+..........+ ..+.++
T Consensus 155 ~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~-d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~--~~~~~g 226 (330)
T 3hxj_A 155 NDNYLYAINPD---GTEKWRFKTNDAITSAASI-GKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRP--AISEDG 226 (330)
T ss_dssp TTSEEEEECTT---SCEEEEEECSSCCCSCCEE-CTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCC--EECTTS
T ss_pred CCCEEEEECCC---CCEeEEEecCCCceeeeEE-cCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceece--EECCCC
Confidence 98999999976 7889988766554444433 3467899998 89999998899999987654433333 244567
Q ss_pred eEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003327 700 QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
.||+++.+++|+++| .+|+.+|.+.........+..+. ++.+|+++.+|.|+++|. ++
T Consensus 227 ~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~------------~g~l~v~t~~ggl~~~d~-~g-------- 284 (330)
T 3hxj_A 227 TIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGN------------TDTIYFGSYDGHLYAINP-DG-------- 284 (330)
T ss_dssp CEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECT------------TSCEEEECTTCEEEEECT-TS--------
T ss_pred eEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcC------------CCeEEEecCCCCEEEECC-CC--------
Confidence 999999999999998 57889999887655544444432 789999999999999985 33
Q ss_pred ccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccc
Q 003327 780 KDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+..+.+.+++....+++. .++.||+++.+|.+++...+..+.+
T Consensus 285 -----~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~~~ 328 (330)
T 3hxj_A 285 -----TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHHHH 328 (330)
T ss_dssp -----CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC------
T ss_pred -----cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccccccc
Confidence 445666677777778887 6889999999999998877655443
No 40
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.96 E-value=6.1e-27 Score=269.87 Aligned_cols=325 Identities=16% Similarity=0.268 Sum_probs=240.5
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceEEe
Q 003327 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAAVL 525 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~~~ 525 (829)
.....++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... .+..+.
T Consensus 43 ~n~~~l~~~W~~~~~~~~~~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 118 (689)
T 1yiq_A 43 QNVGQLGLAWSYKLDLDRGVEATPIV----VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA 118 (689)
T ss_dssp TTGGGEEEEEEEECSSCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE
T ss_pred cccCCceEEEEEECCCCCCceecCEE----ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE
Confidence 34457889999999865 5789998 58999999999999999999999999987653211 011122
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC------CeeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEE
Q 003327 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC------GEVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCV 593 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~------~~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~ 593 (829)
.+++.||+++.|+.|++||++||+++|++... ..+.++|++.+ +.+|+++. ++.|++||.+||+++
T Consensus 119 ~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 119 VWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 34579999999999999999999999999875 24455676654 78888763 689999999999999
Q ss_pred EeeccC-------------------------------CcccccceeecCCCEEEEEecCCe-------------------
Q 003327 594 YKLPCG-------------------------------GSIFGSPAIDEVHDVLYVASTSGR------------------- 623 (829)
Q Consensus 594 w~~~~~-------------------------------~~~~~~~~~~~~~~~l~v~t~~g~------------------- 623 (829)
|++... +..+..+.++.+.+.||+++.++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 998641 112345677777899999998764
Q ss_pred EEEEEccCCCceEEEeeccCCcc-----eeeeee----eecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCCc----
Q 003327 624 LTAISVKALPFHTLWLHELEVPA-----FASLCI----TSANR---HVICCLVDGHVVALD-SSGSIIWRCRTGGP---- 686 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~-----~~s~~~----~~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~---- 686 (829)
|+++|+++ |+.+|+++..... .....+ ..++. .+++++.+|.++++| .+|+++|..+....
T Consensus 277 v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 277 IVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp EEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 99999998 9999998753211 111111 11232 688888999999999 99999987653320
Q ss_pred ---------e---------------eecCc---------cccc-CCCeEEEEee--------------------------
Q 003327 687 ---------I---------------FAGPC---------TSFA-LPSQVLICSR-------------------------- 706 (829)
Q Consensus 687 ---------~---------------~~~~~---------~~~~-~~~~i~~~t~-------------------------- 706 (829)
+ ...|. +..+ ..+.+|+.+.
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 0 00010 1111 2456777632
Q ss_pred -------------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003327 707 -------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 707 -------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
+|.|++||+.||+++|+++.+......++.. .++++++++.||.|++||
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST------------AGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE------------CCCEEEEECCCCcEEEEE
Confidence 3779999999999999998776544333332 288999999999999999
Q ss_pred eecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003327 768 VNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g 814 (829)
.++| +.+|+++++..+...|+. .+|+.|++...|
T Consensus 503 ~~tG-------------~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 503 ADTG-------------EKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCC-------------ccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 9987 788899998888888886 589999876544
No 41
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.96 E-value=1.1e-26 Score=267.26 Aligned_cols=322 Identities=18% Similarity=0.271 Sum_probs=242.5
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceEEe
Q 003327 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAAVL 525 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~~~ 525 (829)
.....++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... ....+.
T Consensus 50 ~n~~~~~~~W~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a 125 (677)
T 1kb0_A 50 ANVKDLGLAWSYNLESTRGVEATPVV----VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA 125 (677)
T ss_dssp TTGGGEEEEEEEECCCCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE
T ss_pred ccccCccEEEEEECCCCCCceeCCEE----ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce
Confidence 33456889999999854 7789998 58899999999999999999999999998764310 011222
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC------CeeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEE
Q 003327 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC------GEVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCV 593 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~------~~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~ 593 (829)
.+++.||+++.|+.|+++|++||+++|++... ..+...|++.+ +.||+++. ++.|++||.+||+.+
T Consensus 126 ~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 126 LWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 34579999999999999999999999999876 34556677664 78999875 689999999999999
Q ss_pred EeeccCCc--------------------------------ccccceeecCCCEEEEEecCC-------------------
Q 003327 594 YKLPCGGS--------------------------------IFGSPAIDEVHDVLYVASTSG------------------- 622 (829)
Q Consensus 594 w~~~~~~~--------------------------------~~~~~~~~~~~~~l~v~t~~g------------------- 622 (829)
|++..... .+..+.++.+.+.||+++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 99876322 123456777789999998764
Q ss_pred eEEEEEccCCCceEEEeeccCCcc------eeeeeeee---cC---CEEEEEeeCCeEEEEc-CCCCEEEEeecCC----
Q 003327 623 RLTAISVKALPFHTLWLHELEVPA------FASLCITS---AN---RHVICCLVDGHVVALD-SSGSIIWRCRTGG---- 685 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~---~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~---- 685 (829)
.|+++|+++ |+.+|+++..... ...+.+.. ++ +.+++++.+|.++++| .+|+++|..+...
T Consensus 284 sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 284 SIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred EEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 499999998 9999998764321 12233222 33 5688889999999999 9999999886432
Q ss_pred --------ce------------eecC---------ccccc-CCCeEEEEeeC----------------------------
Q 003327 686 --------PI------------FAGP---------CTSFA-LPSQVLICSRN---------------------------- 707 (829)
Q Consensus 686 --------~~------------~~~~---------~~~~~-~~~~i~~~t~~---------------------------- 707 (829)
++ ...| .+..+ ..+.+|+.+.+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 01 1111 01112 34678886542
Q ss_pred ---------------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003327 708 ---------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 708 ---------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
|.|++||..||+++|++..+......+.... ++.+|+++.+|.+++||..++
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~------------g~~v~~g~~dg~l~a~D~~tG- 508 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA------------GNVVFQGTADGRLVAYHAATG- 508 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET------------TTEEEEECTTSEEEEEETTTC-
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC------------CCEEEEECCCCcEEEEECCCC-
Confidence 7899999999999999987665444333322 789999999999999999987
Q ss_pred cccccccccccceeeeeeccCCcccccceE--ECCEEEEee
Q 003327 773 TGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC 811 (829)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~ 811 (829)
+.+|++.++..+...|+. .+|+.|++.
T Consensus 509 ------------~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 509 ------------EKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ------------CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ------------ceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 778888888888888888 588888764
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.95 E-value=5.9e-29 Score=273.03 Aligned_cols=213 Identities=15% Similarity=0.194 Sum_probs=169.4
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003327 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.+....+.. ....++.|.+++.++|+|+
T Consensus 209 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~----------~~~g~~~~~~~~~~~i~d~ 277 (437)
T 2y27_A 209 QSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVE----------TKDGPTIWEDHFYPEIIDP 277 (437)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTTEEEEEECCTT----------TCSSCEECTTTEEEEEECT
T ss_pred cCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhcCCeeEEecCC----------CCCceeEccCceEEEEEcC
Confidence 57999999999999999999999888 799999999999854322222221 1112556778999999985
Q ss_pred C-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc-CCcE-----EEE
Q 003327 97 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ-SGDL-----VFL 166 (829)
Q Consensus 97 ~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~-~G~l-----~~~ 166 (829)
+ + +.++.|||+|+|. +.+.| ..+||+|||+|++++ +|.+ +|+
T Consensus 278 ~~g~~~~~g~~Gel~v~~~------------t~~~~----------------~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 278 ETGEVLPDGELGELVFTSL------------TKEAL----------------PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp TTCCBCCTTCCEEEEEEES------------SCSSS----------------CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred CCCCCCCCCCccEEEEecC------------CcCCc----------------hhheeecCCEEEEeCCCCCCccccCccc
Confidence 4 3 3567799999872 22223 247899999999999 6985 899
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCC-Cc
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~ 245 (829)
||.||+||++|++|+|.+||++|.+||.|.+++++..+++..+..++++|++.++........+++++++++.|+.+ .+
T Consensus 330 GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 409 (437)
T 2y27_A 330 GRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGV 409 (437)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998888877766677899999887654322234567888888888888 48
Q ss_pred CCeEEEe--CcccCCCCCCcchhhhc
Q 003327 246 PNRFVFM--DSLPMTSSGKVDYASLS 269 (829)
Q Consensus 246 p~~~~~~--~~lP~t~~GKi~r~~l~ 269 (829)
|..+.++ ++||+|+ ||++|...+
T Consensus 410 p~~v~~v~~~~lP~t~-GKi~r~~~~ 434 (437)
T 2y27_A 410 TAVINVLPVNGIERSV-GKARRVVDK 434 (437)
T ss_dssp CEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred ceEEEEeCCCCccCCC-CcceEEEec
Confidence 8888888 5899999 999998654
No 43
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.95 E-value=2.8e-25 Score=255.36 Aligned_cols=323 Identities=21% Similarity=0.315 Sum_probs=236.7
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee-----------eceE
Q 003327 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE-----------CSAA 523 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~-----------~~~~ 523 (829)
.+...++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... ..+.
T Consensus 39 ~n~~~l~~~W~~~~~~~~~~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 114 (668)
T 1kv9_A 39 SNVRSLGLAWYMDLDNTRGLEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA 114 (668)
T ss_dssp TTGGGEEEEEEEECSCCSCCCCCCEE----ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE
T ss_pred cccCCcceEEEEECCCCCCcccCCEE----ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE
Confidence 34557889999999764 5789998 58899999999999999999999999987654311 1223
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeE
Q 003327 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRC 592 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~ 592 (829)
+ .++.||+++.++.|+++|++||+++|++.... .+...|++.+ +.+|+++. +|.|+++|++||++
T Consensus 115 ~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--~~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 115 L--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp E--EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred E--ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC--CEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 3 45689999999999999999999999998742 3455666654 78888864 48899999999999
Q ss_pred EEeeccC-------------------------------CcccccceeecCCCEEEEEecCCe------------------
Q 003327 593 VYKLPCG-------------------------------GSIFGSPAIDEVHDVLYVASTSGR------------------ 623 (829)
Q Consensus 593 ~w~~~~~-------------------------------~~~~~~~~~~~~~~~l~v~t~~g~------------------ 623 (829)
+|++... +..+..+.++.+.+.+|+++.++.
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 9998642 112345677777799999987763
Q ss_pred -EEEEEccCCCceEEEeeccCCcc-----eeeee----eeecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCC----
Q 003327 624 -LTAISVKALPFHTLWLHELEVPA-----FASLC----ITSANR---HVICCLVDGHVVALD-SSGSIIWRCRTGG---- 685 (829)
Q Consensus 624 -l~~~~~~~~~g~~~w~~~~~~~~-----~~s~~----~~~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~---- 685 (829)
|+++|+++ |+.+|+++..... ..++. +..++. .+++++.+|.++++| .+|+++|..+...
T Consensus 271 ~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 271 SILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 99999998 9999999764211 01111 112332 588889999999999 9999997654321
Q ss_pred ---------ceee------------cCc---------cccc-CCCeEEEEe-----------------------------
Q 003327 686 ---------PIFA------------GPC---------TSFA-LPSQVLICS----------------------------- 705 (829)
Q Consensus 686 ---------~~~~------------~~~---------~~~~-~~~~i~~~t----------------------------- 705 (829)
++.. .|. ...+ ..+.+|+.+
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 1110 000 0111 235566532
Q ss_pred -------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccc
Q 003327 706 -------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQ 778 (829)
Q Consensus 706 -------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~ 778 (829)
.+|.|++||+.||+.+|+..........+... .++++++++.+|.|++||.+++
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t------------~gg~vf~g~~dg~l~a~d~~tG------- 489 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST------------AGNLVFQGTAAGQMHAYSADKG------- 489 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTTC-------
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEe------------CCCEEEEECCcccchhhhhhcC-------
Confidence 23789999999999999998766544333222 2889999999999999999877
Q ss_pred cccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003327 779 SKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g 814 (829)
+.++.+.++..+...|+. .++++|++...|
T Consensus 490 ------~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 490 ------EALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp ------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------hhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 778888888888888886 588888865443
No 44
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.92 E-value=2.3e-23 Score=234.29 Aligned_cols=307 Identities=18% Similarity=0.215 Sum_probs=213.3
Q ss_pred EECCCCcEEEEEEcCCc----eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee---------eeeeeee
Q 003327 501 ADAKRSSVLWEIKLEGR----IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---------KCQPVVD 567 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~~----~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---------~~~~~~~ 567 (829)
.|..++++.|++..++. ...++++. ++.||+++.++.|+++|++||+++|++...... ...+.+.
T Consensus 39 ~n~~~~~~~W~~~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~ 116 (582)
T 1flg_A 39 DNVFKLTPAWSYSFGDEKQRGQESQAIVS--DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY 116 (582)
T ss_dssp TTGGGCEEEEEEECCTTCCSCCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE
T ss_pred cccCCCcEEEEEECCCccCCcceeccEEE--CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE
Confidence 45678999999988743 23456553 468999988667999999999999999875432 1233443
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCC------EEEEEec------CCeEEEEEcc
Q 003327 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHD------VLYVAST------SGRLTAISVK 630 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~------~l~v~t~------~g~l~~~~~~ 630 (829)
++.||+++.++.|+++|++||+++|++.... ...++|++.+ + .||+++. +|.|+++|++
T Consensus 117 --~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~--~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 117 --GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVK--DGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp --TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEE--CTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred --CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeC--CCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 4889999999999999999999999987754 3556787766 4 8888764 7899999999
Q ss_pred CCCceEEEeeccCCc-----------------------------------------ceeeeeeeecCCEEEEEeeC----
Q 003327 631 ALPFHTLWLHELEVP-----------------------------------------AFASLCITSANRHVICCLVD---- 665 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~-----------------------------------------~~~s~~~~~~~~~l~~~~~~---- 665 (829)
+ |+.+|....... ...++.+.+..+.+|+++.+
T Consensus 193 t--G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~ 270 (582)
T 1flg_A 193 T--GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPW 270 (582)
T ss_dssp T--CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSS
T ss_pred C--CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcc
Confidence 8 999998754210 01123444567899998841
Q ss_pred --------------------CeEEEEc-CCCCEEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEE
Q 003327 666 --------------------GHVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYS 712 (829)
Q Consensus 666 --------------------g~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~ 712 (829)
+.|+++| .+|+++|+++.... ..+.|.+... .++ .+++++.+|.+++
T Consensus 271 ~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 271 NTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp CGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred cCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence 5899999 99999999976422 1233433321 233 5778899999999
Q ss_pred EeCCCCcEEEEEecCCccc---------cccc-------------------------cccccccccccccCCCcEEEEEc
Q 003327 713 FEQESGNLLWEYSVGDPIT---------ASAY-------------------------IDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~---------~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
+|.+||+++|.+.....+. ..+. ..........+.....+.+|+..
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 9999999999988654211 0000 00000000001112234566543
Q ss_pred ---------------------------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccc-eEEC
Q 003327 759 ---------------------------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP-VMIG 804 (829)
Q Consensus 759 ---------------------------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 804 (829)
..|.|++||+.++ +..|+..........+ +..+
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tag 497 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-------------KVVWEHKEHLPLWAGVLATAG 497 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-------------CEEEEEEESSCCCSCCEEETT
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-------------CEEEEecCCCCCcccceEeCC
Confidence 2577888888776 5566666555555544 4468
Q ss_pred CEEEEeeeCCeEEEEecccccccc
Q 003327 805 GRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 805 ~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
+.+|+|+.||.|++||.+||++.+
T Consensus 498 glvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 498 NLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCcEEEEECCCCCEEE
Confidence 999999999999999999999764
No 45
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.92 E-value=4.7e-23 Score=231.81 Aligned_cols=305 Identities=14% Similarity=0.142 Sum_probs=215.3
Q ss_pred CCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEc-CCCcEEEEEecCCe-----------eeeeeeee
Q 003327 503 AKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDY-LTGDIYWTFQTCGE-----------VKCQPVVD 567 (829)
Q Consensus 503 ~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~-~tG~~~w~~~~~~~-----------~~~~~~~~ 567 (829)
..+.++.|+++++. .+..++++. ++.||+++. ++.|+++|+ +||+++|++..... +...+.+.
T Consensus 37 ~~~l~~~W~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (571)
T 2ad6_A 37 VKNVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG 114 (571)
T ss_dssp GGGCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE
T ss_pred ccCccEEEEEECCCCCCcccccEEE--CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE
Confidence 34578889988763 244566664 468999998 899999999 99999999876542 11234444
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCCCceE
Q 003327 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHT 636 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~ 636 (829)
++.||+++.++.|+++|.+||+.+|++.... .+.++|++.+ +.||+++. +|.|+++|.++ |+.
T Consensus 115 --~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--g~v~vg~~~~~~~~~g~v~a~D~~t--G~~ 188 (571)
T 2ad6_A 115 --AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKT--GEL 188 (571)
T ss_dssp --TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTT--CCE
T ss_pred --CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC--CEEEEEecCCccCCCCEEEEEECCC--CcE
Confidence 4889999999999999999999999988765 4567787765 89999986 68999999998 999
Q ss_pred EEeeccCCcce--------------------------------------eeeeeeecCCEEEEEeeC-------------
Q 003327 637 LWLHELEVPAF--------------------------------------ASLCITSANRHVICCLVD------------- 665 (829)
Q Consensus 637 ~w~~~~~~~~~--------------------------------------~s~~~~~~~~~l~~~~~~------------- 665 (829)
+|++....+.. ..+.+....+.+|+++.+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 99987643220 112344456899998743
Q ss_pred ---CeEEEEc-CCCCEEEEeecCCc------eeecCccccc-CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003327 666 ---GHVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 666 ---g~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
+.|+++| .+|+.+|+++.... ..+.|.+... .++ .+++++.+|.++++|.+||+++|..+....+
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 3599999 99999999986431 2234443221 134 3677888999999999999999998765421
Q ss_pred c---------ccccc-------------------ccccccccccccCCCcEEEEEc------------------------
Q 003327 731 T---------ASAYI-------------------DEHLQLKLESCLSIDRLVCICT------------------------ 758 (829)
Q Consensus 731 ~---------~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~------------------------ 758 (829)
. ..|.. .........+.....+++|+.+
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 0 00100 0000000011122356666654
Q ss_pred -------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccc
Q 003327 759 -------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 759 -------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+|.|+++|..++ +..|++.......++++. .++.+|+++.+|.|++||.++|
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG-------------~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTG-------------KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ceeccCccccCCCCCCeEEEEECCCC-------------CEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 2477888888766 566666666555565554 5889999999999999999999
Q ss_pred cccc
Q 003327 825 HLEE 828 (829)
Q Consensus 825 ~~~~ 828 (829)
+..+
T Consensus 496 ~~lw 499 (571)
T 2ad6_A 496 KELW 499 (571)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9764
No 46
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.92 E-value=4.1e-23 Score=231.20 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=212.3
Q ss_pred CCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEc-CCCcEEEEEecCCee-----------eeeeeee
Q 003327 503 AKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDY-LTGDIYWTFQTCGEV-----------KCQPVVD 567 (829)
Q Consensus 503 ~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~-~tG~~~w~~~~~~~~-----------~~~~~~~ 567 (829)
..++++.|++.++. ....++++. ++.||+++. ++.|+++|+ +||+++|+++..... ...+.+.
T Consensus 37 v~~l~~~W~~~~g~~~g~~~tP~v~--~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~ 114 (599)
T 1w6s_A 37 VKQLRPAWTFSTGLLNGHEGAPLVV--DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW 114 (599)
T ss_dssp GGGEEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEE
T ss_pred cCCCcEEEEEECCCCCCceeccEEE--CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEE
Confidence 34678889988763 234566664 468999998 899999999 999999999875431 1224442
Q ss_pred cCCCE----EEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCC
Q 003327 568 APRQL----IWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKAL 632 (829)
Q Consensus 568 ~~~~~----i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~ 632 (829)
+.++. ||+++.++.|+++|.+||+++|+..... .+.++|++.+ +.||+++. +|.|+++|.++
T Consensus 115 p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~--g~V~vg~~g~e~g~~g~v~A~D~~T- 191 (599)
T 1w6s_A 115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKT- 191 (599)
T ss_dssp CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTT-
T ss_pred ecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC--CEEEEEecccccCCCCeEEEEECCC-
Confidence 12355 9999999999999999999999988765 5667888876 89999874 78999999998
Q ss_pred CceEEEeeccCCcce--------------------------------------eeeeeeecCCEEEEEeeCC--------
Q 003327 633 PFHTLWLHELEVPAF--------------------------------------ASLCITSANRHVICCLVDG-------- 666 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~--------------------------------------~s~~~~~~~~~l~~~~~~g-------- 666 (829)
|+.+|++....+.. ..+.+....+.+|+++.++
T Consensus 192 -G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 192 -GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp -CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred -CcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 99999987654321 1234455788999998653
Q ss_pred --------eEEEEc-CCCCEEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003327 667 --------HVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 667 --------~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
.|+++| .+|+++|+++.... ..+.|.+... .++ .++.++.+|.++++|.+||+++|...
T Consensus 271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 899999 99999999986532 1233333221 234 46668899999999999999999887
Q ss_pred cCCccc---------ccccccc-------------------ccccccccccCCCcEEEEEc-------------------
Q 003327 726 VGDPIT---------ASAYIDE-------------------HLQLKLESCLSIDRLVCICT------------------- 758 (829)
Q Consensus 726 ~~~~~~---------~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~------------------- 758 (829)
....+. ..+.... .......+..+..+++|+..
T Consensus 351 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 542110 0000000 00000000011122333221
Q ss_pred --------------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEE
Q 003327 759 --------------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIY 817 (829)
Q Consensus 759 --------------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~ 817 (829)
..|.|++||..++ +..|+........+.++. .++.+|+++.+|.|+
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~ 497 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-------------DYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLK 497 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCC-------------CEEeEecCCCCccCcceEecCCEEEEECCCCeEE
Confidence 3477888888766 556666555555555554 689999999999999
Q ss_pred EEecccccccc
Q 003327 818 CIALETQHLEE 828 (829)
Q Consensus 818 ~~d~~tg~~~~ 828 (829)
+||.+||+..+
T Consensus 498 A~D~~tG~~lW 508 (599)
T 1w6s_A 498 ARDSDTGDLLW 508 (599)
T ss_dssp EEETTTCCEEE
T ss_pred EEECCCCCEEE
Confidence 99999999765
No 47
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.92 E-value=2.7e-23 Score=239.01 Aligned_cols=308 Identities=17% Similarity=0.170 Sum_probs=220.0
Q ss_pred EEECCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeee
Q 003327 500 CADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVV 566 (829)
Q Consensus 500 ~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~ 566 (829)
..|..++++.|++.++.. +..++++. ++.||+++.++.|+++|++||+++|+++.... ....+.+
T Consensus 49 ~~n~~~~~~~W~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~ 126 (677)
T 1kb0_A 49 AANVKDLGLAWSYNLESTRGVEATPVVV--DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL 126 (677)
T ss_dssp TTTGGGEEEEEEEECCCCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE
T ss_pred cccccCccEEEEEECCCCCCceeCCEEE--CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE
Confidence 345667899999987643 45566664 46899999999999999999999999987542 1223444
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEec------CCeEEEEEccCCCc
Q 003327 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPF 634 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g 634 (829)
. ++.||+++.++.|+++|.+||+++|++... ....++|++.+ +.||+++. +|.|+++|.++ |
T Consensus 127 ~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~t--G 200 (677)
T 1kb0_A 127 W--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAET--G 200 (677)
T ss_dssp E--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--C
T ss_pred E--CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCC--C
Confidence 3 589999999999999999999999999876 34667788775 89999875 58899999998 9
Q ss_pred eEEEeeccCCcce--------------------------------eeeeeeecCCEEEEEeeCC----------------
Q 003327 635 HTLWLHELEVPAF--------------------------------ASLCITSANRHVICCLVDG---------------- 666 (829)
Q Consensus 635 ~~~w~~~~~~~~~--------------------------------~s~~~~~~~~~l~~~~~~g---------------- 666 (829)
+.+|++....+.. ..+.+..+++.+|+++.++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 9999987643220 1234555788999998664
Q ss_pred ---eEEEEc-CCCCEEEEeecCCc------eeecCccccc-CC----CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccc
Q 003327 667 ---HVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LP----SQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT 731 (829)
Q Consensus 667 ---~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~----~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~ 731 (829)
.|+++| .+|+++|+++.... ..+.|.+... .+ +.+++++.+|.|+++|.+||+++|.........
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 499999 99999999886432 1233332211 12 468888999999999999999999987543110
Q ss_pred c------------------------ccccccccccccccccCCCcEEEEEccC---------------------------
Q 003327 732 A------------------------SAYIDEHLQLKLESCLSIDRLVCICTSS--------------------------- 760 (829)
Q Consensus 732 ~------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------- 760 (829)
. .|...........+.....+++|+.+.+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 0 0000000000011112346778876532
Q ss_pred ----------------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccc
Q 003327 761 ----------------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 761 ----------------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~t 823 (829)
|.|.+||..++ +..|++.........++. .++.+|+++.+|.|++||.+|
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQ-------------KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccccccccccCCCCCccEEEEEeCCCC-------------cEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 67899998876 666777665555555444 578999999999999999999
Q ss_pred ccccc
Q 003327 824 QHLEE 828 (829)
Q Consensus 824 g~~~~ 828 (829)
|+..+
T Consensus 508 G~~lw 512 (677)
T 1kb0_A 508 GEKLW 512 (677)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 99754
No 48
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.91 E-value=3.1e-23 Score=219.21 Aligned_cols=275 Identities=21% Similarity=0.377 Sum_probs=211.9
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEE
Q 003327 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIY 541 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~ 541 (829)
.+..|+++++..+..++++ +.++.||+++.+ |+++|. +|+.+|.+..+.....++.+. ++.+|+++.++.|+
T Consensus 49 g~~~~~~~~~~~~~~~~~~---~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~ 120 (330)
T 3hxj_A 49 GSVKWFFKSGEIIECRPSI---GKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLY 120 (330)
T ss_dssp SCEEESSCGGGEEEECCEE---TTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEE
T ss_pred CcEEEEEecCCCcccceEE---ecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEE
Confidence 3457888877666667766 468899999977 999997 899999876665544445554 57899999999999
Q ss_pred EEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC
Q 003327 542 FLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 542 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
++|.. |+.+|.+.........++.. .++.+|+++.++.|+++|.+ |+.+|.+........+++.+. ++.+|+++
T Consensus 121 ~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v~t-- 194 (330)
T 3hxj_A 121 AINTD-GTEKWRFKTKKAIYATPIVS-EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYFGS-- 194 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEEC-TTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEEES--
T ss_pred EEcCC-CCEEEEEcCCCceeeeeEEc-CCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEEEe--
Confidence 99988 99999988766655555554 46779999998999999998 999999987776667777754 57899999
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003327 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
+.|+++| .+ |+.+|..........++.. ..++.+|+++.+++++++|.+|+.+|++.......+.+. .+.++.|
T Consensus 195 ~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~-~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~--~~~~g~l 268 (330)
T 3hxj_A 195 DKVYAIN-PD--GTEKWNFYAGYWTVTRPAI-SEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPV--IGNTDTI 268 (330)
T ss_dssp SSEEEEC-TT--SCEEEEECCSSCCCSCCEE-CTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCE--ECTTSCE
T ss_pred CEEEEEC-CC--CcEEEEEccCCcceeceEE-CCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccce--EcCCCeE
Confidence 6799999 55 8999998765544344443 345699999999999999988999999887655444432 3457899
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 702 LICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
|+++.+|+|+++|+ +|+.+|.+..+.....+++.+. ++.+|+++.+|.+++...+
T Consensus 269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~------------~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE------------NGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT------------TCCEEEECTTSCEEEEEC-
T ss_pred EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC------------CCEEEEEcCCCeEEEEecc
Confidence 99999999999996 8999999887666555554443 7889999999988877554
No 49
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.91 E-value=2.1e-22 Score=232.00 Aligned_cols=304 Identities=18% Similarity=0.236 Sum_probs=210.8
Q ss_pred CCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeeecCC
Q 003327 504 KRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVDAPR 570 (829)
Q Consensus 504 ~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~~~ 570 (829)
.+.++.|++.++.. +..++++. ++.||+++.++.|+++|++||+++|+++.... +...+.+. +
T Consensus 46 ~~l~~~W~~~~~~~~~~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 121 (689)
T 1yiq_A 46 GQLGLAWSYKLDLDRGVEATPIVV--DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--K 121 (689)
T ss_dssp GGEEEEEEEECSSCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T
T ss_pred CCceEEEEEECCCCCCceecCEEE--CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--C
Confidence 35678888887643 34456553 46899999999999999999999999876432 11234444 4
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEE
Q 003327 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w 638 (829)
+.||+++.++.|+++|.+||+++|++... ..+.++|++.+ +.||+++. +|.|+++|.++ |+.+|
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 197 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAET--GKEAW 197 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCC--CcEEE
Confidence 88999999999999999999999998775 24556777765 88999864 58899999998 99999
Q ss_pred eeccCC--c-----------------------------ceeeeeeeecCCEEEEEeeCCe-------------------E
Q 003327 639 LHELEV--P-----------------------------AFASLCITSANRHVICCLVDGH-------------------V 668 (829)
Q Consensus 639 ~~~~~~--~-----------------------------~~~s~~~~~~~~~l~~~~~~g~-------------------i 668 (829)
++.... + ...++.+.++.+.+|+++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 986321 0 0113445556889999987753 9
Q ss_pred EEEc-CCCCEEEEeecCCc-e----eecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc----
Q 003327 669 VALD-SSGSIIWRCRTGGP-I----FAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPITA---- 732 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~-~----~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~---- 732 (829)
+++| .+|+++|+++.... . ...+.+..+ .++ .+++++.+|.++++|.+||+++|..+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999 99999999875321 1 111111111 123 588889999999999999999987765431100
Q ss_pred ----cccccccc--------------------ccccccccCCCcEEEEEcc-----------------------------
Q 003327 733 ----SAYIDEHL--------------------QLKLESCLSIDRLVCICTS----------------------------- 759 (829)
Q Consensus 733 ----~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~----------------------------- 759 (829)
.+...... .....+.....+++|+.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00000000 0000111234567776632
Q ss_pred ----------------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeCCeEEEEecc
Q 003327 760 ----------------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 760 ----------------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+|.|++||+.++ +..|+..........++ ..++.+|+|+.||.|++||.+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ-------------QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC-------------CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 367888888876 66677766655544443 468899999999999999999
Q ss_pred cccccc
Q 003327 823 TQHLEE 828 (829)
Q Consensus 823 tg~~~~ 828 (829)
||+..+
T Consensus 505 tG~~lw 510 (689)
T 1yiq_A 505 TGEKLW 510 (689)
T ss_dssp TCCEEE
T ss_pred CCccce
Confidence 999764
No 50
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.89 E-value=2.5e-21 Score=222.57 Aligned_cols=305 Identities=15% Similarity=0.199 Sum_probs=209.2
Q ss_pred CCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-----------eeeeeeecC
Q 003327 503 AKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-----------KCQPVVDAP 569 (829)
Q Consensus 503 ~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-----------~~~~~~~~~ 569 (829)
..++++.|+++++.. +..++++. ++.||+++.++.|+++|++||+++|+++..... ...+.+.
T Consensus 41 ~~~l~~~W~~~~~~~~~~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-- 116 (668)
T 1kv9_A 41 VRSLGLAWYMDLDNTRGLEATPLFH--DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-- 116 (668)
T ss_dssp GGGEEEEEEEECSCCSCCCCCCEEE--TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--
T ss_pred cCCcceEEEEECCCCCCcccCCEEE--CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--
Confidence 346778898887643 34566654 468999999999999999999999999764321 1234444
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEE
Q 003327 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w 638 (829)
++.||+++.++.|+++|.+||+++|++... ....++|++.+ +.||+++. +|.|+++|.++ |+.+|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--~~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADT--GKLAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC--CEEEEeCCCCCcCCCCEEEEEECCC--CcEEE
Confidence 488999999999999999999999999774 23456777765 89999875 48899999998 99999
Q ss_pred eeccCC--cc-----------------------------eeeeeeeecCCEEEEEeeCC-------------------eE
Q 003327 639 LHELEV--PA-----------------------------FASLCITSANRHVICCLVDG-------------------HV 668 (829)
Q Consensus 639 ~~~~~~--~~-----------------------------~~s~~~~~~~~~l~~~~~~g-------------------~i 668 (829)
++.... +. ..++.+....+.+|+++.++ .|
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 986421 10 01234455678999998765 39
Q ss_pred EEEc-CCCCEEEEeecCCc-e----eecCcccc--cCCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcc------
Q 003327 669 VALD-SSGSIIWRCRTGGP-I----FAGPCTSF--ALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPI------ 730 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~-~----~~~~~~~~--~~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~------ 730 (829)
+++| .+|+++|+++.... . ...+.+.. ..++ .+++++.+|.++++|.+||+++|..+.....
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 9999 99999999986421 1 11121111 1134 4888899999999999999999766543210
Q ss_pred --cccccccccccc-----------------ccccccCCCcEEEEEc---------------------------------
Q 003327 731 --TASAYIDEHLQL-----------------KLESCLSIDRLVCICT--------------------------------- 758 (829)
Q Consensus 731 --~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~--------------------------------- 758 (829)
...+.......+ ...+.....+.+|+.+
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000100000000 0001112245555432
Q ss_pred ---cCCcEEEEEeecCccccccccccccceeeeeeccCCcccc-cceEECCEEEEeeeCCeEEEEecccccccc
Q 003327 759 ---SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS-SPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 759 ---~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+|.|++||..++ +..|+......... .++..++.+|+++.+|.|++||.++|++.+
T Consensus 433 ~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQ-------------KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp GGGCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCccceEEEEeCCCC-------------cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 2377889998876 56666665554443 455578999999999999999999998753
No 51
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.89 E-value=1.3e-24 Score=231.97 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=169.3
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFG 604 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~ 604 (829)
+++.||+++.|+.|++||++||+++|++.. +.+.+.|++.+ +..+++++.++.|++||.++|+.+|+..... ...+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567999999999999999999999999987 66666666653 3455556889999999999999999876532 2345
Q ss_pred cceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003327 605 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
+|++.. ++.||+++.++.+++||+++ |+.+|++....... ..+.++.+++++.++.|+++| .+|+++|++..
T Consensus 86 sp~~~~-~~~v~~g~~dg~v~a~D~~t--G~~~w~~~~~~~~~----~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRSS-DGILYMGKKQDIWYVIDLLT--GEKQQTLSSAFADS----LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEec-CCEEEEEeCCCEEEEEECCC--CcEEEEecCCCccc----ccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 666622 47899999999999999998 99999987654322 223678999999999999999 89999999874
Q ss_pred CCceeecCcccc--cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc---
Q 003327 684 GGPIFAGPCTSF--ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT--- 758 (829)
Q Consensus 684 ~~~~~~~~~~~~--~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 758 (829)
.. ...+.+.. ..++.+|+++.+|.|+++|.++|+.+|+++...++...+.... ++.+++..
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~------------dg~~~v~~~~~ 224 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR------------EGLRKVMHINV 224 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT------------SSCEEECCEEE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC------------CceEeccceee
Confidence 32 23333221 1237899999999999999999999999987665543222221 34433211
Q ss_pred cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccc
Q 003327 759 SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 759 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~~g~l~~~d~~t 823 (829)
.++.++++|..+|... ....|++.+.+.+. +|++.++.||+++.+|.||+++..+
T Consensus 225 ~~~~l~~ld~~tG~~~---------~~~~W~~~~~~~~~-sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 225 AVETLRYLTFMSGEVG---------RITKWKYPFPKETE-AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EHHHHHHHHHHHHHHH---------HHHTSCCCCCCHHH-HHHHSEEEECBEECSSCEECCEEEE
T ss_pred cccceeeeehhcCCcc---------cceeeeeccCcccc-ccccccceEEEecccCCEEecCccc
Confidence 1345677776654100 00456666666655 8888899999999999999999874
No 52
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.88 E-value=9.8e-25 Score=233.01 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=171.1
Q ss_pred ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003327 476 ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 476 ~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
++|++ .++.||+++.++.|++||+.||+++|++.. +.+..++.+ .++..+++++.|+.|++||++||+.+|+..
T Consensus 3 ssP~v----~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 3 STVTL----PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp ---------CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred CCCee----eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 57877 789999999999999999999999999987 554444444 343455556789999999999999999865
Q ss_pred cCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003327 556 TCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 556 ~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
... .+.++|++. .++.||+++.++.+++||+++|+.+|++..+.....+| +++.+|+++.++.|++||.++
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p----~~~~v~~~~~dg~v~a~d~~t-- 149 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP----STSLLYLGRTEYTITMYDTKT-- 149 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS--
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc----cCCEEEEEecCCEEEEEECCC--
Confidence 432 223445542 24789999999999999999999999987765433333 458999999999999999988
Q ss_pred ceEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe---e
Q 003327 634 FHTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS---R 706 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t---~ 706 (829)
|+.+|++.... ..++.+..+ ++.+++++.+|.++++| .+|+++|++....++....+ ...++.+|+.. .
T Consensus 150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~--~~~dg~~~v~~~~~~ 225 (369)
T 2hz6_A 150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYV--WQREGLRKVMHINVA 225 (369)
T ss_dssp SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEE--CTTSSCEEECCEEEE
T ss_pred CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEE--ecCCceEeccceeec
Confidence 99999976432 123333221 27899999999999999 89999999987776655332 22355554321 2
Q ss_pred CCeEEEEeCCCCc----EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003327 707 NGSIYSFEQESGN----LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 707 ~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
++.++++|..+|+ .+|++.....+. ++.. .++.+|+++.+|.|++++...
T Consensus 226 ~~~l~~ld~~tG~~~~~~~W~~~~~~~~~-sp~~-------------~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 226 VETLRYLTFMSGEVGRITKWKYPFPKETE-AKSK-------------LTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCHHH-HHHH-------------SEEEECBEECSSCEECCEEEE
T ss_pred ccceeeeehhcCCcccceeeeeccCcccc-cccc-------------ccceEEEecccCCEEecCccc
Confidence 4568999999999 999988776554 3332 278999999999999999874
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.81 E-value=4.4e-17 Score=179.65 Aligned_cols=303 Identities=12% Similarity=0.076 Sum_probs=217.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..+++|+.||.|..||..+++.+..+..+.....+..+. ++.+++|+.|+.|+.||..+|+.+..+..+.......
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 205 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence 46789999999999999999999998877665544444454 5689999999999999999999998887655444444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003327 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+. ++.+++++.|+.++.||..+++.++.+..+........+ ++..+++++.+|.+..||..+ ++.+..+....
T Consensus 206 ~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 279 (445)
T 2ovr_B 206 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHT 279 (445)
T ss_dssp EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--TEEEEEECCCS
T ss_pred Eec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--CcEeEEecCCC
Confidence 443 478999999999999999999999888765554444444 358899999999999999988 88887776544
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003327 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
....+..+ ++..+++++.++.|.+|| .+++.+..+......... +.. .++.+++++.||.|..||..+++.+..
T Consensus 280 ~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~--~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 280 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MEL-KDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--EEE-ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE--EEE-eCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 44334343 788999999999999999 899988776543322111 111 356888999999999999999999887
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-----ccCCcccc
Q 003327 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-----ELQGDIFS 798 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 798 (829)
+........... +...+++.+++++.||.|.+||..++. ....+ ......+.
T Consensus 355 ~~~~~~~~~~v~----------~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 355 LQGPNKHQSAVT----------CLQFNKNFVITSSDDGTVKLWDLKTGE-------------FIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp ECSTTSCSSCEE----------EEEECSSEEEEEETTSEEEEEETTTCC-------------EEEEEEECTTGGGTCEEE
T ss_pred EccCCCCCCCEE----------EEEECCCEEEEEeCCCeEEEEECCCCc-------------eeeeeeccccCCCCceEE
Confidence 764221111100 001126789999999999999988662 22222 01111222
Q ss_pred cceEE--CCEEEEeeeCCe----EEEEeccc
Q 003327 799 SPVMI--GGRVFVGCRDDY----IYCIALET 823 (829)
Q Consensus 799 ~~~~~--~~~l~vg~~~g~----l~~~d~~t 823 (829)
+.... +..+.+|+.||. |+.||...
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 22222 235567788886 99998764
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.4e-17 Score=178.22 Aligned_cols=320 Identities=11% Similarity=0.062 Sum_probs=220.0
Q ss_pred CCe-EEEEecCCCcEEEEEC----CCCcEEEE------EEc----------CCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003327 485 SDI-YLFVGSHSHKFICADA----KRSSVLWE------IKL----------EGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 485 ~~~-~l~igs~~g~l~~~d~----~tg~~~w~------~~~----------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
++. .|++|+.++.|..||. .+++..|. +.. +.....+..+++++..+++++.|+.|+.|
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 455 8999999999999999 99995443 322 22234567788888999999999999999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc---------------ccccee
Q 003327 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI---------------FGSPAI 608 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~---------------~~~~~~ 608 (829)
| .+|+.+..+..+........+.+++..+++++.++.++.||..+++.+..+...... .....+
T Consensus 136 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (425)
T 1r5m_A 136 N-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214 (425)
T ss_dssp E-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred e-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence 9 788888888766655566677777888999999999999999999998887665433 444555
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-Cc
Q 003327 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GP 686 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~ 686 (829)
.+ ++.+++++.+|.++.||..+ ++.+..+...........+.+++..+++++.++.|.+|| .+++.+..+... ..
T Consensus 215 ~~-~~~~~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 291 (425)
T 1r5m_A 215 VD-DDKFVIPGPKGAIFVYQITE--KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291 (425)
T ss_dssp EE-TTEEEEECGGGCEEEEETTC--SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC
T ss_pred cC-CCEEEEEcCCCeEEEEEcCC--CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc
Confidence 54 57899999999999999987 666666655444456677777888999999999999999 888777666532 22
Q ss_pred eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003327 687 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 687 ~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
+.... ...++.+++++.+|.|+.||..+++.+..+............ ..++..+++++.+|.|.+|
T Consensus 292 i~~~~---~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-----------s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 292 IVSAS---WVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI-----------SQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp EEEEE---EETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE-----------CTTSSEEEEEETTSCEEEE
T ss_pred EEEEE---ECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE-----------cCCCCEEEEEECCCeEEEE
Confidence 32221 223458888999999999999999988877654332221111 1237899999999999999
Q ss_pred EeecCcccccccccc-------ccceeeeeeccCCc--ccccceE--ECCEEEEeeeCCeEEEEecc
Q 003327 767 RVNLDVTGKENQSKD-------HMVQEFAKLELQGD--IFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 767 d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
|..++.......... ........+..... .+..... .+..|++++.||.|+.||.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 998653100000000 00002233332211 3333333 24578899999999999975
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.80 E-value=6.2e-17 Score=169.54 Aligned_cols=267 Identities=11% Similarity=0.083 Sum_probs=207.0
Q ss_pred CeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..|+.|+.|+.|..||..+++. .|.+..+.....+..+..++..+++++.|+.|..||..+|+.+..+..+......
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEE
Confidence 45788999999999999887754 4666655555567778888889999999999999999999998888765544445
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003327 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+++..+++++.++.+..||..+++..+.+...........+.+++..+++++.+|.|..||+.+ ++.+..+...
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKLLHTLEGH 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccc
Confidence 66777888999999999999999999999888877666666777888788999999999999999988 8887777655
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003327 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
.....+..+.+++..++.++.++.|.+|| .+++....+.... .+....+.+ .+..++.++.||.|..||..+++.+
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 54456677888888999999999999999 8888776554332 232221111 2457888899999999999999988
Q ss_pred EEEecCC-ccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 722 WEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 722 w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
..+.... .+....+. .++..+++++.||.|.+||.
T Consensus 284 ~~~~~h~~~v~~v~~s------------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYN------------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEECCCSSCEEEEEEC------------TTSSEEEEEETTCCEEEEEC
T ss_pred EEEcCCCCcEEEEEEC------------CCCCEEEEEeCCCeEEEEeC
Confidence 7765433 22222222 23778999999999999985
No 56
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=4.4e-17 Score=165.77 Aligned_cols=237 Identities=14% Similarity=0.155 Sum_probs=167.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-eeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~ 562 (829)
.+..|++++.++.|++||.+||+++|++..+.. ....+.+.++++ +++ +.++.|++||+ +|+++|++..+. ....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE-ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE-eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 467899999999999999999999999987652 223455666665 555 56889999998 999999998753 2233
Q ss_pred eeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcc------cccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003327 563 QPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSI------FGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~------~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
...+..+++.+++.+. ++.++++|+ +|+.+|++...... ........+++.+++.+.++.|++||++ |+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---G~ 156 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---GQ 156 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC---CC
Confidence 3344556666766666 788999996 89999998754321 1112344556777777788999999976 89
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-c--eeecC-cccccCCCeEEEEeeCC--
Q 003327 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-P--IFAGP-CTSFALPSQVLICSRNG-- 708 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~--~~~~~-~~~~~~~~~i~~~t~~g-- 708 (829)
.+|++......+. .....+++.+++++.++.|+++| .+|+++|++.... + .+..+ ......++.+|+++.+|
T Consensus 157 ~~w~~~~~~~~~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~ 235 (276)
T 3no2_A 157 LLNSVKLSGTPFS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD 235 (276)
T ss_dssp EEEEEECSSCCCE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred EEEEEECCCCccc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence 9999987644433 33444556666666667899999 7899999997421 1 11111 12234578899988533
Q ss_pred ---------eEEEEeCCCCcEEEEEecCCcc
Q 003327 709 ---------SIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 709 ---------~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
.++.+++ +|+++|++.....+
T Consensus 236 ~~~~~~~~~~~~~~~~-~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 236 REAGKGKHPQLVEIDS-EGKVVWQLNDKVKF 265 (276)
T ss_dssp TTGGGSCCCSEEEECT-TSBEEEEECCTTTS
T ss_pred ccccccCCceEEEECC-CCCEEEEecCcccc
Confidence 5888885 89999999765544
No 57
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.79 E-value=6.6e-20 Score=204.18 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCCcccc--------------
Q 003327 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPSILE-------------- 73 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~-------------- 73 (829)
...++++||.+++|||++++++++++.+.+ ++++++|.||+||+++.++.......+....
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 385 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence 456789999999999999999999999987 4568999999999998776544322111000
Q ss_pred --cCCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcc
Q 003327 74 --MSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQT 147 (829)
Q Consensus 74 --~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 147 (829)
.......++|+|++ ++++|+|++. +.++.|||+|+|++++.||+++|+.|++.|...+..+. ....+++
T Consensus 386 ~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~----~~~~~~~ 460 (480)
T 3t5a_A 386 AGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPS----PGTPEGP 460 (480)
T ss_dssp CSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCC----TTCCCCC
T ss_pred CCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhcccc----CCCCCCC
Confidence 00224568999999 9999999764 56778999999999999999999999999964332110 0112568
Q ss_pred eEecCceEEEccCCcEEEEee
Q 003327 148 YFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 148 ~~~TGDl~~~~~~G~l~~~GR 168 (829)
||+|||+|+++ ||.|+|+||
T Consensus 461 w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 461 WLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BEEEEEEEEEE-TTEEEECC-
T ss_pred eeeccceeeEE-CCEEEEeCC
Confidence 99999999996 999999998
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.79 E-value=2.5e-16 Score=174.72 Aligned_cols=268 Identities=12% Similarity=0.130 Sum_probs=197.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++.++.|+.||.|..||..+++.++.+..+.....+..+.+++ .+++|+.|+.|..||..+|+.+..+..+.......
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 35689999999999999999999999888776655666676654 89999999999999999999988887554433333
Q ss_pred eee--cCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------------------CCcccccceeecCCCEEEEEecC
Q 003327 565 VVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------------------GGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 565 ~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------------------~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
.+. +++..+++++.|+.++.||..+++....... .+.......+..++..+++++.+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 289 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 289 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC
Confidence 343 3457789999999999999988764322110 11111112234456889999999
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCe
Q 003327 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 700 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (829)
|.+..||+.+ ++.+...........+..+.+++..+++++.+|.|.+|| .+|+.+..+.......... .. .+..
T Consensus 290 ~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~-~~~~ 364 (464)
T 3v7d_B 290 NTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RL-SDKF 364 (464)
T ss_dssp SCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EE-CSSE
T ss_pred CeEEEEECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE--EE-cCCE
Confidence 9999999987 888877766555556777888889999999999999999 8999888776433222211 12 2568
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++.||.|..||..+++..+............+.. ++..+++++ +|.|.+||..++
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV------------SDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE------------CSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe------------CCCEEEEec-CCeEEEEECCCC
Confidence 8999999999999999998887766444333222222 266777777 899999999876
No 59
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.79 E-value=7.2e-17 Score=175.50 Aligned_cols=271 Identities=8% Similarity=-0.009 Sum_probs=203.0
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+..+..++.|+.|+.|..||..+|+....+..+.....+..+.+++..+++|+.|+.|..||..+++.+..+..+.....
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~ 196 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE
Confidence 33567899999999999999999998887777766566778888888999999999999999999998877766655555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++|+.|+.++.||..+|+++..+..+........+..++..++.++.+|.+..||..+ ++..-.+..
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--~~~~~~~~~ 274 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELRE 274 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--CceeeEecC
Confidence 566777778999999999999999999998888776655555556666678899999999999999987 665554443
Q ss_pred CCcceeeeeeeec--------------------CCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCe
Q 003327 643 EVPAFASLCITSA--------------------NRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQ 700 (829)
Q Consensus 643 ~~~~~~s~~~~~~--------------------~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~ 700 (829)
......+..+.++ +..++.|+.++.|.+|| .+|+.+..+.... .+....+ ...+..
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~g~~ 352 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF--HSGGKF 352 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--CSSSSC
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE--cCCCCE
Confidence 3333333333332 55789999999999999 8898877665432 2222211 112456
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
++.++.||.|+.||..+++.+..+..+........+ ...+..+++|+.||.|.+|+.
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-----------~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-----------HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-----------CSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-----------cCCCCEEEEEeCCCcEEEEeC
Confidence 888999999999999999887776644432222211 123678999999999999974
No 60
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.78 E-value=3.4e-16 Score=165.57 Aligned_cols=267 Identities=10% Similarity=-0.011 Sum_probs=201.0
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCe
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGE 559 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~ 559 (829)
.++..++.|+.||.|..||..+++....+..+.....+..+++++..+++|+.|+.+..||..+++ ....+..+..
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 356789999999999999999999988887777666677888899999999999999999988763 3333433433
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
......+.+ ++.+++++.|+.+..||..+++.+..+..+.....+..+.+++..++.++.+|.+..||..+ +.....
T Consensus 145 ~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--~~~~~~ 221 (340)
T 1got_B 145 YLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQT 221 (340)
T ss_dssp CEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEE
T ss_pred cEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CeeEEE
Confidence 333333443 46789999999999999999999888776655556666777678899999999999999987 777766
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC---ceeecCccccc-CCCeEEEEeeCCeEEEEe
Q 003327 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG---PIFAGPCTSFA-LPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~---~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d 714 (829)
+........+..+.+++..++.++.++.|..|| .+++.+..+.... .+.+. ... .+..+.+|+.||.|..||
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV---SFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE---EECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE---EECCCCCEEEEECCCCeEEEEE
Confidence 665555556777888899999999999999999 8887776654332 22221 122 245688889999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003327 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
..+++.+..+..+........+ ..++..++.++.||.|.+||
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~-----------s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGV-----------TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEE-----------CTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEE-----------cCCCCEEEEEcCCccEEecC
Confidence 9999887766544332222111 12377899999999999985
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.78 E-value=5.6e-16 Score=161.83 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=205.9
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..++.|+.|+.+..||..+++....+..+.....+..+.+++..+++++.|+.|..||..+++.+..+..+.....
T Consensus 32 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 111 (312)
T 4ery_A 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 34567899999999999999999998877766665556778888889999999999999999999999888876665555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++++.|+.++.||..+++.+..+..+........+.+++..+++++.+|.+..||..+ ++.+.....
T Consensus 112 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~ 189 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--GQCLKTLID 189 (312)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeeEEec
Confidence 556777788999999999999999999999888876665566667777778899999999999999987 666554432
Q ss_pred -CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-eecCcc-cccCCCeEEEEeeCCeEEEEeCCCC
Q 003327 643 -EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-FAGPCT-SFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 -~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~-~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.........+.+++..+++++.++.|..|| .+++.+..+...... ...... ....+..+..++.||.|+.||..++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 223345566777888999999999999999 888877666533211 111000 1122446778889999999999999
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEc--cCCcEEEEEee
Q 003327 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT--SSGSIHILRVN 769 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~G~l~~~d~~ 769 (829)
+.+..+..+......... .+.+..++.++ .||.|.+|+.+
T Consensus 270 ~~~~~~~~h~~~v~~~~~-----------~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 EIVQKLQGHTDVVISTAC-----------HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEECCCSSCEEEEEE-----------CSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhhccCCcEEEEee-----------cCcCCceEEEEccCCccEEEecCC
Confidence 988777644432222111 22367777775 58999999753
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.77 E-value=5.1e-17 Score=177.65 Aligned_cols=318 Identities=12% Similarity=0.006 Sum_probs=215.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..++.|+.++.++.||..+++....+..+ .+.....+..++..+++|+.|+.|..||..+++.+..+..+.......
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 145 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL 145 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE
T ss_pred cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE
Confidence 4567889999999999999887654333333 333444567788899999999999999999998887765555555566
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003327 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+++..+++++.|+.++.||..+++.+..+..+........+.+++..++.++.+|.+..||+.+ ++.+..+....
T Consensus 146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~ 223 (420)
T 3vl1_A 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT--GTTIHTFNRKE 223 (420)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--TEEEEEECBTT
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC--CceeEEeecCC
Confidence 6777778999999999999999999988887776666666777777788999999999999999988 88777765321
Q ss_pred c------------------------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccC
Q 003327 645 P------------------------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFAL 697 (829)
Q Consensus 645 ~------------------------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~ 697 (829)
. ......+.+++..+++++.+|.|.+|| .+++........ ..+....+ .. .
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~-~ 301 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV-DG-N 301 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE-CS-S
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE-eC-C
Confidence 1 111223345677899999999999999 888877766432 22322221 11 2
Q ss_pred CC-eEEEEeeCCeEEEEeCCCCcE-EEEEec-CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003327 698 PS-QVLICSRNGSIYSFEQESGNL-LWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 698 ~~-~i~~~t~~g~l~~~d~~tG~~-~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
+. .+++++.+|.|+.||..+++. +..+.. ........... .+..+++++.||.|.+||.......
T Consensus 302 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 302 NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA------------AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE------------TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC------------CCCEEEEecCCccEEEEeccCCCCC
Confidence 23 788999999999999998754 444443 22222111221 2678999999999999998764221
Q ss_pred cccccccccceeeeeeccCCcccccceE--EC---CEEEEeeeCCeEEEEeccc
Q 003327 775 KENQSKDHMVQEFAKLELQGDIFSSPVM--IG---GRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~l~vg~~~g~l~~~d~~t 823 (829)
......... .. .......+....+ .+ +.++..+.+|.+..|+.++
T Consensus 370 ~~~~~~~~~-~~---~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETP-TF---LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSC-EE---ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCc-cE---EccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 111000000 00 0111111111111 22 3688888899999998764
No 63
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.77 E-value=1.1e-15 Score=158.70 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=183.1
Q ss_pred EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC
Q 003327 511 EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590 (829)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg 590 (829)
.+..+...+.+..+++++..+++++.|+.|..||..+++.+..+..+........+.+++..+++|+.|+.|+.||..+|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 34444444557788899999999999999999999999998888776655555567777889999999999999999999
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeE
Q 003327 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITS-ANRHVICCLVDGHV 668 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i 668 (829)
+.+..+..+.....+..+.+++..++.++.||.|..||..+ + .....+........+..+.+ ++..++.|+.++.|
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG--TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC--CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99988877766666777777788999999999999999886 5 33333333344445566665 45688999999999
Q ss_pred EEEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003327 669 VALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
..|| .++........+. .+....+.+...+..++.++.||.|..||..+++.+..+..+.........
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~--------- 236 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--------- 236 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---------
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE---------
Confidence 9999 7666555544322 222111111223457888999999999999999988777654332222211
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecC
Q 003327 746 SCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+.+..++.++.||.|.+||..++
T Consensus 237 --~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 237 --HPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp --CSSSSEEEEEETTSCEEEEETTTC
T ss_pred --CCCCCEEEEEcCCCeEEEEECCCC
Confidence 123678999999999999998765
No 64
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.77 E-value=3.7e-16 Score=169.89 Aligned_cols=277 Identities=15% Similarity=0.100 Sum_probs=200.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003327 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..+..+.+++..+++|+.|+.|..||..+|+....+..+........+.+++..+++|+.|+.|..||..+++++..+..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 190 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Confidence 44566777888999999999999999999998888776655555566777788999999999999999999999888776
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003327 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+.....+..+.+++..++.++.++.+..||+.+ |..+..+...........+.+++..++.++.++.|.+|| .+++.
T Consensus 191 h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 666666677777778999999999999999988 777666655554445566667788899999999999999 88877
Q ss_pred EEEeecCCc-eeecCcccc------------------cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccc
Q 003327 678 IWRCRTGGP-IFAGPCTSF------------------ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDE 738 (829)
Q Consensus 678 ~w~~~~~~~-~~~~~~~~~------------------~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 738 (829)
.-.+..... +....+.+. ..+..++.|+.||.|..||..+|+.+..+..+........+
T Consensus 269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~-- 346 (410)
T 1vyh_C 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-- 346 (410)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--
T ss_pred eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE--
Confidence 655433221 111110000 01346888999999999999999988777644332222111
Q ss_pred ccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeE
Q 003327 739 HLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYI 816 (829)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l 816 (829)
...+.++++++.||.|++||..++. ....+..+...+.+..+ .+..|..|+.||.|
T Consensus 347 ---------~~~g~~l~s~s~D~~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 347 ---------HSGGKFILSCADDKTLRVWDYKNKR-------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp ---------CSSSSCEEEEETTTEEEEECCTTSC-------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred ---------cCCCCEEEEEeCCCeEEEEECCCCc-------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 1237889999999999999987542 12222222222333333 24578889999999
Q ss_pred EEEec
Q 003327 817 YCIAL 821 (829)
Q Consensus 817 ~~~d~ 821 (829)
..|+.
T Consensus 405 ~vW~~ 409 (410)
T 1vyh_C 405 KVWEC 409 (410)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.76 E-value=4.8e-16 Score=164.03 Aligned_cols=305 Identities=10% Similarity=0.045 Sum_probs=205.7
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE---EEEe--cCC
Q 003327 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ--TCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~---w~~~--~~~ 558 (829)
++..+.++..++.+..++... .+..... .+.....+..+++++..+++++ |+.|..||..+++.. ..+. .+.
T Consensus 20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~ 97 (337)
T 1gxr_A 20 DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97 (337)
T ss_dssp SSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT
T ss_pred CCCEEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC
Confidence 445555555444444333222 2333323 3444455677888888888888 999999999887632 2222 233
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003327 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
.......+.+++..+++++.++.++.||..+++ ....+..+........+.+++..+++++.+|.+..||..+ ++.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~ 175 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTL 175 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--Cce
Confidence 444555667777889999999999999999887 4444444444455566666678999999999999999987 787
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
+..+...........+.+++..+++++.++.+..|| .+++.+........+....+.+ .+..+++++.+|.|+.||.
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP--TGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC--CCCEEEEEcCCCcEEEEEC
Confidence 777765555556677777888999999999999999 8888887776655554332211 2457888889999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc
Q 003327 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (829)
.+++..........+....+. .++..+++++.+|.|.+||..++. ..........
T Consensus 254 ~~~~~~~~~~~~~~v~~~~~~------------~~~~~l~~~~~dg~i~~~~~~~~~-------------~~~~~~~~~~ 308 (337)
T 1gxr_A 254 NKPDKYQLHLHESCVLSLKFA------------YCGKWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSS 308 (337)
T ss_dssp TSSCEEEECCCSSCEEEEEEC------------TTSSEEEEEETTSEEEEEETTTCC-------------EEEEEECSSC
T ss_pred CCCCeEEEcCCccceeEEEEC------------CCCCEEEEecCCCcEEEEECCCCe-------------EEEEecCCCc
Confidence 988765332223333222222 237789999999999999987652 1222222222
Q ss_pred ccccceE--ECCEEEEeeeCCeEEEEec
Q 003327 796 IFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 796 ~~~~~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
+ .+... .+..|++++.||.|+.||.
T Consensus 309 v-~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 V-LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp E-EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred E-EEEEECCCCCEEEEecCCCeEEEEEE
Confidence 2 22222 3568888999999999986
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-15 Score=159.37 Aligned_cols=292 Identities=12% Similarity=0.083 Sum_probs=201.1
Q ss_pred EECCCC-cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC
Q 003327 501 ADAKRS-SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579 (829)
Q Consensus 501 ~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~ 579 (829)
+|+.++ +....+..+.....+..+ .+++.+++++.||.|+.||..+++....+..+........+.+++..+++++.+
T Consensus 2 ~d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 2 IDPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp ---CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred CCccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence 455555 455556666555556666 777899999999999999999998887777666556666777788899999999
Q ss_pred CeEEEEEcCCC---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-c
Q 003327 580 HNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-A 655 (829)
Q Consensus 580 g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~ 655 (829)
+.+..|+..+. +.+..+..+........++ ++.+++++.+|.+..|| . ++..................+ +
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~--~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--E--GSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--T--TEEEEEEECCSSCEEEEEEEETT
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--C--CcEEEecccCCCceeEEEEccCC
Confidence 99999997653 4455554444444444453 58999999999999999 3 666766665555445555555 7
Q ss_pred CCEEEEEeeCCeEEEEcCCCCEEEEee--cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc
Q 003327 656 NRHVICCLVDGHVVALDSSGSIIWRCR--TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS 733 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d~~g~~~w~~~--~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 733 (829)
++.+++++.++.+..|| .++....+. ....+... ....++.+++++.+|.|+.||..+++.+..+..+......
T Consensus 155 ~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHL---AVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp TTEEEEEETTSCEEEEE-TTEEEEEECSSCSSCEEEE---EEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CCEEEEEECCCCEEEEe-cCceEEEEeccCcccEEEE---EEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 88999999999999999 233333333 22223222 1233566899999999999999999998887744332222
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeee
Q 003327 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCR 812 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~ 812 (829)
..... ++.+++++.+|.|++||..++ +....+..+...+..... .++.+++++.
T Consensus 231 ~~~~~------------~~~l~~~~~dg~v~iwd~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 285 (313)
T 3odt_A 231 IKLLP------------NGDIVSCGEDRTVRIWSKENG-------------SLKQVITLPAISIWSVDCMSNGDIIVGSS 285 (313)
T ss_dssp EEECT------------TSCEEEEETTSEEEEECTTTC-------------CEEEEEECSSSCEEEEEECTTSCEEEEET
T ss_pred EEEec------------CCCEEEEecCCEEEEEECCCC-------------ceeEEEeccCceEEEEEEccCCCEEEEeC
Confidence 22221 337889999999999998765 223333333322222222 2567888999
Q ss_pred CCeEEEEecccccccc
Q 003327 813 DDYIYCIALETQHLEE 828 (829)
Q Consensus 813 ~g~l~~~d~~tg~~~~ 828 (829)
||.|+.||.++++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999988653
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.76 E-value=2.5e-15 Score=156.80 Aligned_cols=291 Identities=11% Similarity=0.070 Sum_probs=205.3
Q ss_pred cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEE
Q 003327 507 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 507 ~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d 586 (829)
+....+..+.....+..+++++..+++++.|+.|..||..+++....+..+........+.+++..+++++.|+.+..||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34444444555556777888888999999999999999999998887766655555566777788999999999999999
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003327 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
..+++.+..+..+........+.+++..++.++.+|.+..||+.+ ++.+..+........+..+.+++..++.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999888776665555666777778999999999999999987 777776665554456667777888999999999
Q ss_pred eEEEEc-CCCCEEEEeecC--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccc
Q 003327 667 HVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLK 743 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 743 (829)
.|..|| .+++.+...... .++....+ ...+..+++++.+|.|..||..+++.+..+.............
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------ 243 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN------ 243 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE------
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE------
Confidence 999999 888876554322 12221111 1124578888999999999999999887765433221111000
Q ss_pred cccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee--eCCeEEEE
Q 003327 744 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC--RDDYIYCI 819 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~--~~g~l~~~ 819 (829)
.....+..+++++.||.|++||..++ +....+..+...+.+... .+..+..++ .|+.|..|
T Consensus 244 --~~~~~~~~l~sg~~dg~i~vwd~~~~-------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 244 --FSVTGGKWIVSGSEDNLVYIWNLQTK-------------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp --EECSSSCEEEECCTTSCEEEEETTTC-------------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred --EEeCCCcEEEEECCCCEEEEEECCCc-------------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 00123678899999999999998765 223333322222222222 245666665 58899999
Q ss_pred ecc
Q 003327 820 ALE 822 (829)
Q Consensus 820 d~~ 822 (829)
+.+
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 754
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.76 E-value=1.6e-15 Score=160.00 Aligned_cols=269 Identities=9% Similarity=0.075 Sum_probs=197.5
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEE---EEEE--cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEe
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVL---WEIK--LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQ 555 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~---w~~~--~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~ 555 (829)
..++..+++++ +|.+..||..+++.. ..+. .+.....+..+.+++..+++++.|+.|+.||..+++ ....+.
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 34566788887 899999999887532 2222 233445567788888899999999999999999887 444444
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003327 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
.+........+.+++..+++++.++.++.||..+++.+..+..+........+.+++..+++++.+|.++.||..+ ++
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~ 216 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--GR 216 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC--Cc
Confidence 4444444556666778899999999999999999999888876665566667777778999999999999999988 77
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEe
Q 003327 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
.+.......+ .....+.+++..+++++.++.+..+| .+++..........+....+.+ .+..+++++.+|.|..||
T Consensus 217 ~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 217 QLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEECSSC-EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred eEeeecCCCc-eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC--CCCEEEEecCCCcEEEEE
Confidence 7776654443 35666777888999999999999999 7776543332233333222111 245688888999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+++.+........+....+.. ++..+++++.+|.|++||..
T Consensus 294 ~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 294 TPYGASIFQSKESSSVLSCDISV------------DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTTCCEEEEEECSSCEEEEEECT------------TSCEEEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEecCCCcEEEEEECC------------CCCEEEEecCCCeEEEEEEe
Confidence 99999987666555544332222 37889999999999999863
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.76 E-value=6.8e-16 Score=170.11 Aligned_cols=266 Identities=15% Similarity=0.131 Sum_probs=196.9
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc
Q 003327 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF 603 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~ 603 (829)
+..+++.+++|+.||.|+.||..+|+.+..+..+........+. ++.+++|+.||.++.||..+++.+..+..+....
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v 202 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 202 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE
Confidence 33456789999999999999999999998887655444444454 4789999999999999999999998887665555
Q ss_pred ccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003327 604 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 604 ~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
....++ ++.+++++.+|.+..||..+ ++.++.............+ ++..+++++.++.|..|| .+++.+..+.
T Consensus 203 ~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 203 RCMHLH--EKRVVSGSRDATLRVWDIET--GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp EEEEEE--TTEEEEEETTSEEEEEESSS--CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred EEEEec--CCEEEEEeCCCEEEEEECCC--CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 555554 48899999999999999988 8877776554443333333 778899999999999999 8888887776
Q ss_pred cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 683 TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 ~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
... .+.... . .+..+++++.||.|..||..+++.+..+........... .+++.+++++.||
T Consensus 277 ~~~~~v~~~~---~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~-------------~~~~~l~~~~~dg 339 (445)
T 2ovr_B 277 GHTNRVYSLQ---F-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-------------LKDNILVSGNADS 339 (445)
T ss_dssp CCSSCEEEEE---E-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-------------EETTEEEEEETTS
T ss_pred CCCCceEEEE---E-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE-------------EeCCEEEEEeCCC
Confidence 432 232221 2 456789999999999999999999887764433222111 1267899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeecc---CCcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003327 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLEL---QGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.|.+||..++ +....+.. ....+.+....++.++.|+.||.|+.||..+++..
T Consensus 340 ~i~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 340 TVKIWDIKTG-------------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp CEEEEETTTC-------------CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCC-------------cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCcee
Confidence 9999998765 22222221 22223333345778999999999999999988753
No 70
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.75 E-value=3.1e-15 Score=155.44 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=181.3
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|+.|+.||.|..||..+++....+..+.....+..+.+++..+++|+.|+.|..||..+|+.+..+..+.....
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 34677899999999999999999998888877766566778888889999999999999999999999988887766566
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++..+++|+.|+.|..||..++ .+...+..+........+.+ ++..++.++.||.|..||+.+ +......
T Consensus 102 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~--~~~~~~~ 179 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--SSCSEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--CCcccee
Confidence 6677777889999999999999999887 44444444444445555655 456889999999999999876 4433333
Q ss_pred ccCC-cceeeeeee--ecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 641 ELEV-PAFASLCIT--SANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~-~~~~s~~~~--~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
.... .......+. .++..++.++.++.|..|| .+++.+..+.... .+....+.+ ....+..++.||.|..||.
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEET
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC--CCCEEEEEcCCCeEEEEEC
Confidence 2221 112223332 3566899999999999999 8888877765432 222221111 2346888899999999999
Q ss_pred CCCcEEEEEecCC
Q 003327 716 ESGNLLWEYSVGD 728 (829)
Q Consensus 716 ~tG~~~w~~~~~~ 728 (829)
.+++.+..+..+.
T Consensus 258 ~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 258 STYKVEKTLNVGL 270 (304)
T ss_dssp TTCCEEEEECCSS
T ss_pred CCCceeeeccCCC
Confidence 9999988776543
No 71
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.75 E-value=4.7e-15 Score=156.80 Aligned_cols=276 Identities=12% Similarity=0.032 Sum_probs=194.6
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---
Q 003327 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--- 591 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--- 591 (829)
+.....+..+++++..+++++.|+.|+.||..+++.+..+..+........+.+++..+++|+.|+.+..||..+++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 33334466777788899999999999999999999988887766655566677788899999999999999988763
Q ss_pred -EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE
Q 003327 592 -CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
....+..+........+.+ ++.++.++.++.+..||+.+ ++.+..+........+..+.+++..++.++.++.|..
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEE-TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeEEEecCCCccEEEEEECC-CCcEEEEECCCcEEEEECCC--CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 3333333333333333433 46789999999999999988 8877776655555566777778889999999999999
Q ss_pred Ec-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc---cccccccccccccccc
Q 003327 671 LD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQLKLE 745 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~~~~ 745 (829)
|| .+++.+..+.... .+....+.+ .+..+..++.||.|..||..+++.+..+..... +....
T Consensus 211 wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~----------- 277 (340)
T 1got_B 211 WDVREGMCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS----------- 277 (340)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-----------
T ss_pred EECCCCeeEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE-----------
Confidence 99 8888876665332 232222111 245788889999999999999988776654332 11111
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEe
Q 003327 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d 820 (829)
..+++.++++|+.||.|.+||..++ +....+.-+...+.+..+ .+..|..|+.||.|+.||
T Consensus 278 -~s~~g~~l~~g~~d~~i~vwd~~~~-------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 -FSKSGRLLLAGYDDFNCNVWDALKA-------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -ECTTSSEEEEEETTSEEEEEETTTC-------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -ECCCCCEEEEECCCCeEEEEEcccC-------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 1234889999999999999998754 122222222222222222 245788899999999986
No 72
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.74 E-value=2.4e-15 Score=157.47 Aligned_cols=266 Identities=13% Similarity=0.125 Sum_probs=192.6
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG 604 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~ 604 (829)
++..+++|+.|+.|..||..+++. .|.+..+........+..+...+++++.|+.|+.||..+|+.+..+..+.....
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 356799999999999999877764 455655544444455666678899999999999999999999888876655555
Q ss_pred cceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003327 605 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
...+.+++..+++++.+|.+..|+.++ ++..+..........+..+.+++..++.++.++.|..|| .+++.+..+..
T Consensus 127 ~~~~spdg~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp CEEECTTSSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 667777788999999999999999988 777777766555556778888899999999999999999 88988776653
Q ss_pred CC-ceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 684 GG-PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 684 ~~-~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.. ++... ... .+..++.++.||.|..||..+++....+............ .+++..+++++.||
T Consensus 205 h~~~v~~l---~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-----------sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 205 HAMPIRSL---TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF-----------CPDDTHFVSSSSDK 270 (321)
T ss_dssp CSSCCCEE---EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE-----------CTTSSEEEEEETTS
T ss_pred cCCceeEE---EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE-----------CCCCCEEEEEeCCC
Confidence 32 22221 122 2346788899999999999999887666543332221111 12378899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003327 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
.|.+||..++ +....+......+..... .+..|+.++.||.|..||.
T Consensus 271 ~v~iwd~~~~-------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 271 SVKVWDVGTR-------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEETTTT-------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred cEEEEeCCCC-------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999998765 222222222222222222 3457888999999999985
No 73
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.74 E-value=2.2e-15 Score=160.22 Aligned_cols=271 Identities=8% Similarity=0.000 Sum_probs=196.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc------EEEEEecC
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD------IYWTFQTC 557 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~------~~w~~~~~ 557 (829)
.++..|+.|+.|+.|..||..+++....+..+.....+..+++++..+++|+.|+.+..|+...++ ....+..+
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc
Confidence 356789999999999999999999888777776666678889999999999999999999875431 22233334
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec--CCCEEEEEecCCeEEEEEccCCCce
Q 003327 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE--VHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~--~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
........+.+++..+++++.|+.+..||..+++++..+..+........+.. ++..++.++.+|.+..||..+ ++
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~ 231 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQ 231 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CC
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--Cc
Confidence 44444555666777899999999999999999999888766544333333332 346899999999999999988 77
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEE
Q 003327 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSF 713 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~ 713 (829)
.+..+........+..+.+++..++.++.++.+..|| .+++.+..+...........+... .+..+++++.|+.|+.|
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 7766665555556677777889999999999999999 777665444332211111111122 24567888899999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003327 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
|..+|+.+-.+..+........+ .+++.++++++.||.|.+|+
T Consensus 312 d~~~~~~~~~l~~h~~~v~~l~~-----------spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRVSTLRV-----------SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEE-----------CTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCceEEEEECCCCcEEEEEE-----------CCCCCEEEEEcCCCCEEecC
Confidence 99999887665433322221111 22378899999999999884
No 74
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.3e-17 Score=165.97 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=136.4
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC--Ceeeee--eeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcc
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQ--PVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~--~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
+.||+++.||.|+++|.+||+++|+++.. ...... +.. ..++.+|++ +.||.||++|.++|..+|.+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~-~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR-LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT-TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc-ccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 58999999999999999999999999875 111110 111 123456665 68999999999999999988765444
Q ss_pred cccceee------------cCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-------eeeeee-----ecCCE
Q 003327 603 FGSPAID------------EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF-------ASLCIT-----SANRH 658 (829)
Q Consensus 603 ~~~~~~~------------~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~-------~s~~~~-----~~~~~ 658 (829)
..+|+.. ..++.+|+++.+|.++++|+.+ |+.+|.+....+.- .++.+. ..++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN--GEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTT--CCEEEEESTTCBCC--------------------CCE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC--CcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 4444441 0358999999999999999998 99999998764321 111111 23578
Q ss_pred EEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcc--------cccCCCeEEEEeeCCeEEEEeCCCCcEEE-EEecCCc
Q 003327 659 VICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT--------SFALPSQVLICSRNGSIYSFEQESGNLLW-EYSVGDP 729 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~--------~~~~~~~i~~~t~~g~l~~~d~~tG~~~w-~~~~~~~ 729 (829)
++++..+..+.+.+++|+ +|..+.... ....+ ....++.+|+++.+|.|+++|..+|+.+| +.++..+
T Consensus 168 v~ig~~~y~v~~~~~sG~-~W~~~~s~~--~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 168 IVIGKTIFELGIHSYDGA-SYNVTYSTW--QQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp EEEEEEEEECEECCTTSC-CCCCEEEEE--ECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred EEEecceEEEEEECCCCC-eEEEecccc--cccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEEEeecCCCC
Confidence 999887777777777787 898764321 11110 01124677889999999999999999999 6655444
Q ss_pred c
Q 003327 730 I 730 (829)
Q Consensus 730 ~ 730 (829)
+
T Consensus 245 v 245 (339)
T 2be1_A 245 I 245 (339)
T ss_dssp E
T ss_pred e
Confidence 3
No 75
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.73 E-value=6.5e-15 Score=154.09 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=196.1
Q ss_pred CCeEEEEecCCCcEEEEECCC-----CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003327 485 SDIYLFVGSHSHKFICADAKR-----SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-----g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
....++.|+.|+.|..||..+ +.....+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+..
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~ 108 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC
Confidence 346899999999999999764 334455666666666778888999999999999999999999999888876665
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec------CCCEEEEEecCCeEEEEEccCCC
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE------VHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~------~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
......+.+++..+++|+.|+.+..||.+. +.+..+..+........+.+ +...++.++.++.+..||+.+
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-- 185 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-- 185 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--
Confidence 555556777788899999999999999864 45544443333222222222 234788899999999999987
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003327 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
++....+........+..+.+++..++.++.++.|.+|| .+++.+..+.....+.+.. ...++..++++.++++..
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~sp~~~~la~~~~~~i~v 262 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA---FSPNRYWLAAATATGIKV 262 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE---ECSSSSEEEEEETTEEEE
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE---EcCCCCEEEEEcCCCcEE
Confidence 766655554545556677788889999999999999999 8888888777655554433 233555566666777999
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|+..++.....+........... .. ........+++.++++|+.||.|++||..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 263 FSLDPQYLVDDLRPEFAGYSKAA-EP--HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTEEEEEEECCCCTTCCGGG-CC--CEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEeCcCeeeeccCccccccccCc-Cc--ceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99887776655432211100000 00 0000112345889999999999999998753
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.6e-15 Score=156.13 Aligned_cols=274 Identities=10% Similarity=0.007 Sum_probs=203.1
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|++++.+|.|..||..+++....+..+.....+..+++++..+++++.|+.|+.||..+++.+..+.....+ .
T Consensus 41 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-~ 119 (369)
T 3zwl_B 41 NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPV-K 119 (369)
T ss_dssp CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCE-E
T ss_pred cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCe-E
Confidence 335678999999999999999999999888766665667788888889999999999999999999999888755444 4
Q ss_pred eeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEEe-----------eccCC--cccccceeecCCCEEEEEecCCeE
Q 003327 563 QPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVYK-----------LPCGG--SIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w~-----------~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
...+.+++..+++++.+ +.++.||..++..... ..... .......+.+++..+++++.+|.|
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 199 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEE
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEE
Confidence 45667778888888888 9999999876532111 11111 134445566667889999999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE
Q 003327 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
..||+.+. ++.+...........+..+.+++..+++++.++.|.+|| .+++.+..+.....+....+. ..+..+++
T Consensus 200 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 276 (369)
T 3zwl_B 200 SKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT--PLKEFIIL 276 (369)
T ss_dssp EEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSSSEEEE
T ss_pred EEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec--CCCceEEE
Confidence 99998851 455555555555556677777888999999999999999 899988887755544333221 12456777
Q ss_pred EeeCC--------------eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 704 CSRNG--------------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~~g--------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.++ .+..||..+++.+..+..+......... ..++.++++++.||.|.+|+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-----------s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI-----------SPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE-----------CTTSSEEEEEETTSEEEEEEEC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE-----------CCCCCEEEEEcCCCeEEEEECc
Confidence 77776 7999999999988777644332222211 1237889999999999999998
Q ss_pred cC
Q 003327 770 LD 771 (829)
Q Consensus 770 ~~ 771 (829)
.+
T Consensus 346 ~~ 347 (369)
T 3zwl_B 346 KS 347 (369)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-14 Score=155.80 Aligned_cols=287 Identities=11% Similarity=0.075 Sum_probs=200.0
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003327 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+.....+..+++++..+++++.|+.|+.||..+++.+..+..+........+.+++..+++++.|+.|+.||..+++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34444445567788888899999999999999999999998887666555666677778899999999999999999999
Q ss_pred EEEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccCCCceEEEee---------ccCCc--ceeeeeeeec
Q 003327 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKALPFHTLWLH---------ELEVP--AFASLCITSA 655 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~~~g~~~w~~---------~~~~~--~~~s~~~~~~ 655 (829)
.+..+... .......+.+++..+++++.+ |.+..||..+......+.. ..... ......+.++
T Consensus 108 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEECS-SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEeecC-CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 99888743 344456667777889988888 9999999876221111111 01111 3345566777
Q ss_pred CCEEEEEeeCCeEEEEc-CC-CCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc
Q 003327 656 NRHVICCLVDGHVVALD-SS-GSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
+..+++++.+|.|.+|| .+ ++.+..+.... .+....+.+ .+..+++++.+|.|..||..+++.+..+.....+..
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 264 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP--DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC--CCCEEEEecCCceEEEEECCCCceeeeecCCCCcee
Confidence 88999999999999999 66 66666655432 333222111 245688889999999999999999888875554443
Q ss_pred ccccccccccccccccCCCcEEEEEccCC--------------cEEEEEeecCccccccccccccceeeeeeccCCcccc
Q 003327 733 SAYIDEHLQLKLESCLSIDRLVCICTSSG--------------SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS 798 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G--------------~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (829)
..+. ..+..+++++.++ .+.+||..++ +....+......+.
T Consensus 265 ~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~~~~~~v~ 319 (369)
T 3zwl_B 265 AVIT------------PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-------------EEIGRVQGHFGPLN 319 (369)
T ss_dssp EEEC------------SSSSEEEEEECCC-------------CEEEEEETTTC-------------CEEEEEECCSSCEE
T ss_pred EEec------------CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-------------cchhheecccCcEE
Confidence 3322 2377888888877 6777776544 22222222222223
Q ss_pred cceE--ECCEEEEeeeCCeEEEEecccccc
Q 003327 799 SPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 799 ~~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+... .+..|+.++.||.|+.|+.+++.+
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 2223 356788899999999999988764
No 78
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.72 E-value=4e-14 Score=152.93 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=192.0
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
.++.++.++.|+.||..+++.++.+..+..+ .++.+++++..+++. +.++.|+.||..+|+.++.+..+..+ ....+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v-~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCc-ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCc-cceEE
Confidence 3556778899999999999999888876654 467788888887654 47999999999999999988876644 34456
Q ss_pred ecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeeccCC
Q 003327 567 DAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 567 ~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+++..++++ +.++.|+.||..+++.+..+..+... ..+.+.+++..+| .++.++.|+.||+.+ ++.+.......
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTVSVGR 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECCS
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCc-ceEEECCCCCEEEEEeCCCCEEEEEECCC--CcEEEEEecCC
Confidence 6667777654 46699999999999998887765443 4556666667775 555689999999987 88877776544
Q ss_pred cceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe---eCCeEEEEeCCCCc
Q 003327 645 PAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS---RNGSIYSFEQESGN 719 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t---~~g~l~~~d~~tG~ 719 (829)
.. ....+.++++.+++. ..++.|+++| .+++..........+....+ ...+..+++++ .++.|+.||..+++
T Consensus 159 ~~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 159 SP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV--NPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp SE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE--CTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred Cc-ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE--CCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 33 556677778788654 5678999999 88887776665443332211 11244688887 58999999999999
Q ss_pred EEEEEecCCccccccccccccccccccccCCCcEEEE-EccCCcEEEEEeecC
Q 003327 720 LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI-CTSSGSIHILRVNLD 771 (829)
Q Consensus 720 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~G~l~~~d~~~~ 771 (829)
.+..+..+.......+ ..++..+|+ ++.++.|++||..++
T Consensus 236 ~~~~~~~~~~~~~~~~------------s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 236 ITARIPVGPDPAGIAV------------TPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEECCSSEEEEEE------------CTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEecCCCccEEEE------------ccCCCEEEEEcCCCCEEEEEECCCC
Confidence 8887776544322111 122666754 577999999998865
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.72 E-value=4.2e-15 Score=171.15 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=201.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC----cEEEEEEcCCce-eeceEEee--CCcEEEEEEeCCEEEEEEcCCC--------c
Q 003327 485 SDIYLFVGSHSHKFICADAKRS----SVLWEIKLEGRI-ECSAAVLA--DFSQVVVGCYKGKIYFLDYLTG--------D 549 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg----~~~w~~~~~~~~-~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG--------~ 549 (829)
++..+++++ ++.+..||..++ +....+..+... ..+..+++ ++..+++++.|+.|..||..+| +
T Consensus 29 dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 107 (615)
T 1pgu_A 29 TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 107 (615)
T ss_dssp TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc
Confidence 456777777 678999999999 777777776666 67788998 9899999999999999998766 5
Q ss_pred EEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeE
Q 003327 550 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRL 624 (829)
Q Consensus 550 ~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l 624 (829)
.+..+..+........+.+++..+++++.+ +.++.|| +++.+..+..+........+.+++. .++.++.+|.+
T Consensus 108 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 108 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence 555665555445556677778888888776 6788888 6677777766665556666666555 78899999999
Q ss_pred EEEEccCCCceEEEeeccCCc---ceeeeeeeec-CCEEEEEeeCCeEEEEc-CCCCEEEEe-----ecCCceeecCccc
Q 003327 625 TAISVKALPFHTLWLHELEVP---AFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRC-----RTGGPIFAGPCTS 694 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~---~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g~~~w~~-----~~~~~~~~~~~~~ 694 (829)
..||..+ ++.+..+..... ...+..+.++ +..+++++.++.|.+|| .+++.+..+ .....+....+
T Consensus 186 ~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~-- 261 (615)
T 1pgu_A 186 VFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-- 261 (615)
T ss_dssp EEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE--
T ss_pred EEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE--
Confidence 9999887 888777765554 5567777878 88899999999999999 899988877 22333433322
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 695 FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
. .+..+++++.+|.|..||..+++.+..+............. . ....+..+++++.+|.|++||..++
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG--V------VATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE--E------EEEETTEEEEEETTSCEEEEETTEE
T ss_pred c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE--E------EeCCCCeEEEEECCCCEEEEECCCC
Confidence 1 45678888999999999999999988877652110000000 0 0013789999999999999998754
No 80
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.71 E-value=1.1e-15 Score=181.26 Aligned_cols=316 Identities=12% Similarity=0.106 Sum_probs=189.1
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.+.++.||+++.+| |+.||..++++.. +.... ......++.+.++.+|+++.+++|+++|.++++...........
T Consensus 138 ~d~~g~lwi~t~~g-l~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 215 (795)
T 4a2l_A 138 EISPEQLLISTPEG-LIMFDIKESKFID-DSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTK 215 (795)
T ss_dssp EEETTEEEEEETTE-EEEEETTTTEEEC-SSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CC
T ss_pred ECCCCCEEEEECCc-eEEEECCCCEEEe-ccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCC
Confidence 45688999999855 9999998876532 11110 11012233344578999997777999998888765421111111
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003327 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
....++.+.++.+|+|+.+++|+.+|..+++........ ...+.+... +.++.+|+||.+ +|+.+|..+
T Consensus 216 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWigt~~-Gl~~~~~~~-- 291 (795)
T 4a2l_A 216 QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM-DSQNRLWIGTFN-DLNIYHEGT-- 291 (795)
T ss_dssp CEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE-CTTSCEEEEESS-CEEEEETTT--
T ss_pred eeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE-cCCCCEEEEeCC-hhheEcCCC--
Confidence 122234445789999998778999999988765432211 112222333 346889999987 599999886
Q ss_pred ceEEEeeccC-------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecC---cccccCCCeE
Q 003327 634 FHTLWLHELE-------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGP---CTSFALPSQV 701 (829)
Q Consensus 634 g~~~w~~~~~-------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~---~~~~~~~~~i 701 (829)
++........ ... ........++.+|+|+.+++|+.++ .++......... ....+.. ++..+.++.|
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~-i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRS-VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSC-EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CeEEEEecCCCCCCCCCCCc-EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 5543322111 111 1222334578999999999999999 655543322111 0111111 2335668899
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecC--------CccccccccccccccccccccCCCcE-EEEEccCCcEEEEEeecCc
Q 003327 702 LICSRNGSIYSFEQESGNLLWEYSVG--------DPITASAYIDEHLQLKLESCLSIDRL-VCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~G~l~~~d~~~~~ 772 (829)
|+|+.+++|+++|..++++....... .....+.+.+ .++. +|+|+.+++|+++|.+++.
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d------------~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD------------EKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE------------TTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc------------CCCCEEEEEeCcCceeEEeCCCCc
Confidence 99999988999999988876532111 1111111111 2566 9999998889999987653
Q ss_pred cccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003327 773 TGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
........ ..++...+.+...+ ++.||+|+. ++|++||.++++++
T Consensus 439 ~~~~~~~~---------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 439 VENFNQRN---------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEECTTT---------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred EEEeecCC---------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEE
Confidence 21110000 01222223333333 689999998 67999999887754
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.71 E-value=4.3e-15 Score=163.11 Aligned_cols=270 Identities=11% Similarity=0.048 Sum_probs=186.4
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+++.+++|+.||.|+.||..+++.++.+..+........+ ++..+++|+.||.|+.||..+++.+..+..+.......
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 5678999999999999999999999988765544443333 56889999999999999999999998887665554455
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEE---EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003327 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTL---WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~---w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
.++ ++.+++++.+|.+..||..+ +... ............ +..+++.+++++.+|.|.+|| .+++.+..+.
T Consensus 220 ~~~--~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 220 RFN--NGMMVTCSKDRSIAVWDMAS--PTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ECC--TTEEEEEETTSCEEEEECSS--SSCCEEEEEECCCSSCEEE--EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEc--CCEEEEeeCCCcEEEEeCCC--CCCceeeeEecCCCCcEEE--EEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 554 47999999999999999987 4432 222222222222 333788999999999999999 8998887776
Q ss_pred cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 683 TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 ~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
... .+... .. .+..+++++.||.|..||..+|+.+..+..+......... ++..+++++.||
T Consensus 294 ~~~~~v~~~---~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-------------~~~~l~sg~~dg 356 (435)
T 1p22_A 294 GHKRGIACL---QY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-------------DNKRIVSGAYDG 356 (435)
T ss_dssp CCSSCEEEE---EE-ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-------------CSSEEEEEETTS
T ss_pred CCCCcEEEE---Ee-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-------------cCCEEEEEeCCC
Confidence 433 22222 12 3568899999999999999999998877644332222111 278899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccccc
Q 003327 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.|.+||..++...... .. .............+.+....+..|+.++.||.|..||..++.
T Consensus 357 ~i~vwd~~~~~~~~~~---~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 357 KIKVWDLVAALDPRAP---AG-TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CEEEEEHHHHTSTTSC---TT-TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred cEEEEECCCCCCcccc---cc-chheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999998765311100 00 001222222223333444467789999999999999987765
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.71 E-value=4e-15 Score=163.33 Aligned_cols=260 Identities=12% Similarity=0.043 Sum_probs=188.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..+++|+.+|.|..||..+++..+.+..+.....+..+ ++..+++|+.||.|..||..+|+.+..+..+.......
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 5778999999999999999999999888766554434444 67899999999999999999999998887655544444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEE---EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003327 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.+. ++.+++|+.|+.|+.||..+++.. .....+........+ +++.+++++.+|.+..||..+ ++.+....
T Consensus 220 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~ 293 (435)
T 1p22_A 220 RFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST--CEFVRTLN 293 (435)
T ss_dssp ECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT--CCEEEEEE
T ss_pred EEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc--CcEEEEEc
Confidence 443 578999999999999999887654 223333333333344 358999999999999999988 88777766
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003327 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.......+... +++.+++++.+|.|..|| .+|+.+..+..... +... .. .+..+++++.||.|..||..+++
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~---~~-~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RF-DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EC-CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE---Ee-cCCEEEEEeCCCcEEEEECCCCC
Confidence 54443333333 678999999999999999 88998877764332 2222 12 45678899999999999987765
Q ss_pred ---------EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 720 ---------LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 720 ---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+..+..+......... ++..+++++.||.|.+||..++
T Consensus 368 ~~~~~~~~~~~~~~~~h~~~v~~l~~-------------~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVEHSGRVFRLQF-------------DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp STTSCTTTTEEEEECCCSSCCCCEEE-------------CSSCEEECCSSSEEEEEC----
T ss_pred CccccccchheeeccCCCCCeEEEEe-------------CCCEEEEEeCCCEEEEEECCCC
Confidence 55554433222111111 2778999999999999998754
No 83
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.71 E-value=2.6e-14 Score=154.42 Aligned_cols=275 Identities=12% Similarity=0.063 Sum_probs=190.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC------------------ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG------------------RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~------------------~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+.++..|..|+ ++.+..||..+|+....+..+. ....+..+++++..+++|+.|+.|..||
T Consensus 73 spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd 151 (393)
T 1erj_A 73 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151 (393)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 33566777766 5779999999999877654321 1134677888989999999999999999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCe
Q 003327 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGR 623 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~ 623 (829)
..+++.+..+..+........+.+++..+++++.|+.++.||..+++....+.....+. ...+.+ ++..+++++.+|.
T Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~s~d~~ 230 (393)
T 1erj_A 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRA 230 (393)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSTTCCEEEEEETTSC
T ss_pred CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcE-EEEEECCCCCEEEEEcCCCc
Confidence 99999888777665555556677778899999999999999999999888776554433 333443 5678899999999
Q ss_pred EEEEEccCCCceEEEeecc-------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE------------EEeec
Q 003327 624 LTAISVKALPFHTLWLHEL-------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII------------WRCRT 683 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~-------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~------------w~~~~ 683 (829)
+..||..+ ++.+..... ......+..+.+++..++.++.++.|..|| .++... ..+..
T Consensus 231 v~iwd~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T 1erj_A 231 VRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308 (393)
T ss_dssp EEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC
T ss_pred EEEEECCC--CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec
Confidence 99999987 766554421 222345666777888999999999999999 554321 11111
Q ss_pred C-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCC
Q 003327 684 G-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 684 ~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
. ..+.+..+ ...+..++.++.||.|+.||..+|+.+..+..+.. +....+... ....+.++.++.++.||
T Consensus 309 h~~~v~~~~~--~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~------~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 309 HKDFVLSVAT--TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------SSLGPEYNVFATGSGDC 380 (393)
T ss_dssp CSSCEEEEEE--CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------CTTCTTCEEEEEEETTS
T ss_pred ccCcEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC------cCcCCCCCEEEEECCCC
Confidence 1 11222111 11245788899999999999999998877764433 222211110 01122467899999999
Q ss_pred cEEEEEee
Q 003327 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.|.+|+..
T Consensus 381 ~i~iW~~~ 388 (393)
T 1erj_A 381 KARIWKYK 388 (393)
T ss_dssp EEEEEEEE
T ss_pred cEEECccc
Confidence 99999876
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.71 E-value=8.2e-15 Score=158.93 Aligned_cols=268 Identities=13% Similarity=0.055 Sum_probs=196.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+.+++++.++.|+.||..+|+....+.. +.....+..+++++..+++|+.||.|+.||..+++.+..+..+.......
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 35577788899999999999998877766 34445577888888999999999999999999999988876655444444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcC-CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003327 565 VVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.+. +..+++++.++.++.||.. .+..+..+..+........+.+++..+++++.+|.|..||..+ ++........
T Consensus 183 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~ 258 (401)
T 4aez_A 183 SWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNH 258 (401)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--SSEEEEECCC
T ss_pred EEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--CCccEEecCC
Confidence 443 4789999999999999998 4566666665555556666777778999999999999999987 7777776555
Q ss_pred CcceeeeeeeecCCEEEE-Ee--eCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCC
Q 003327 644 VPAFASLCITSANRHVIC-CL--VDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQES 717 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~-~~--~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~t 717 (829)
.....+..+.+++..+++ ++ .++.|..|| .+++.+..+.....+....... .+..+++ |+.+|.|..||..+
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEET
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCC
Confidence 544566677765555554 33 689999999 8999888887665554432211 2345666 33799999999998
Q ss_pred CcEEEEEe--cCC-ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 718 GNLLWEYS--VGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 718 G~~~w~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++...... .+. .+....+ ..++..+++++.||.|.+||..++
T Consensus 337 ~~~~~~~~~~~h~~~v~~~~~------------s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 337 SGLTKQVDIPAHDTRVLYSAL------------SPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp TEEEEEEEEECCSSCCCEEEE------------CTTSSEEEEECTTSEEEEEECCC-
T ss_pred ccceeEEEecCCCCCEEEEEE------------CCCCCEEEEEeCCCcEEEEECCCC
Confidence 76654432 222 2221111 223788999999999999998865
No 85
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-16 Score=163.59 Aligned_cols=227 Identities=14% Similarity=0.142 Sum_probs=149.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--Cceeece-EEeeCCcEEEEE--EeCCEEEEEEcCCCcEEEEEecCCee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSA-AVLADFSQVVVG--CYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~-~~~~~~~~v~vg--~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
++.||++|.||.|+++|..||+++|+++.. ....... .....++.+|++ +.||.||++|..+|..+|.+..+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 678999999999999999999999999875 1111100 000123456665 57999999999999999988776544
Q ss_pred eeeeeee------------cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc-------ccceee-----cCCCEEE
Q 003327 561 KCQPVVD------------APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF-------GSPAID-----EVHDVLY 616 (829)
Q Consensus 561 ~~~~~~~------------~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~-------~~~~~~-----~~~~~l~ 616 (829)
..+|+.. ..++.+|+|+.+|.++++|+.||+.+|++..+.... .++... ..++.|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 3333331 146899999999999999999999999998764211 112211 2247899
Q ss_pred EEecCCeEEEEEccCCCceEEEeeccCCccee--------eeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE-EeecCCc
Q 003327 617 VASTSGRLTAISVKALPFHTLWLHELEVPAFA--------SLCITSANRHVICCLVDGHVVALD-SSGSIIW-RCRTGGP 686 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~--------s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w-~~~~~~~ 686 (829)
++..+..+.+.+ ++ |+ +|..+....... ..... .++.+++++.+|.|+++| .+|+.+| +.+...+
T Consensus 170 ig~~~y~v~~~~-~s--G~-~W~~~~s~~~~~~~~~~~~~~~~~s-~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 170 IGKTIFELGIHS-YD--GA-SYNVTYSTWQQNVLDVPLALQNTFS-KDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp EEEEEEECEECC-TT--SC-CCCCEEEEEECCTTTHHHHTTCSSC-SSSCCEEEETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred EecceEEEEEEC-CC--CC-eEEEecccccccccccccccccccc-cCCcEEEECCCCEEEEEECCCCcEEEEeecCCCC
Confidence 988777666666 44 86 898754211000 00111 235567889999999999 8999999 6665554
Q ss_pred ee-----------------ecCccc----ccCCCeEEE-EeeCCeEEEEeCCC
Q 003327 687 IF-----------------AGPCTS----FALPSQVLI-CSRNGSIYSFEQES 717 (829)
Q Consensus 687 ~~-----------------~~~~~~----~~~~~~i~~-~t~~g~l~~~d~~t 717 (829)
+. ..|... ...++.+|+ .+.+|.+|++...+
T Consensus 245 v~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~ 297 (339)
T 2be1_A 245 IVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQN 297 (339)
T ss_dssp EEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTT
T ss_pred eEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCC
Confidence 32 222110 113567777 46788888888643
No 86
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.71 E-value=3.2e-15 Score=177.08 Aligned_cols=321 Identities=8% Similarity=0.066 Sum_probs=188.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC---C
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC---G 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~---~ 558 (829)
.|.++.+|+|+.++.|+.+|..++++...... ..... ..++.+..+.+|+|+.+++|+++|..+++........ .
T Consensus 180 ~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 258 (795)
T 4a2l_A 180 YRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQI-QAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK 258 (795)
T ss_dssp EEETTEEEEEESSSCEEEEETTTCCEEECC----CCCE-EEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT
T ss_pred ECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCee-EEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc
Confidence 34678999999875699999988876532111 11111 3334445578999998778999998887765322111 0
Q ss_pred ---eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEecCCeEEEEE
Q 003327 559 ---EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 559 ---~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
......+..+.++.||+|+.+ +|+.+|..+++........ ...+.+... +.++.+|+||.+++|..++
T Consensus 259 ~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-D~~g~lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 259 SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFM-DSQGGMWLGTYFGGLNYYH 336 (795)
T ss_dssp SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEE-CTTSCEEEEESSSCEEEEC
T ss_pred ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEE-eCCcCEEEEECCCCeEEeC
Confidence 111222345567899999976 7999999988765543211 122223333 4478899999988899999
Q ss_pred ccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-Cc--eeecC---cccc
Q 003327 629 VKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GP--IFAGP---CTSF 695 (829)
Q Consensus 629 ~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~--~~~~~---~~~~ 695 (829)
..+ +........ ......+ .....++.+|+|+.+++|+.++ .+++..+..... .+ ..... .+..
T Consensus 337 ~~~--~~~~~~~~~~~~~~l~~~~V~~-i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 337 PIR--NRFKNIRNIPYKNSLSDNVVSC-IVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp GGG--GSSEEECCCTTSSSCSCSSEEE-EEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCc--ccceEEcCCCCCCCCCCCeeEE-EEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 875 432221111 1111122 2233578999999999999999 777654432111 00 01111 1234
Q ss_pred cCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003327 696 ALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 696 ~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
+.++. ||+|+.+++|+++|.+++++.. +...........+ ..+ ....++.+|+|+. ++|+++|.+++...
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v---~~i----~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENV---YAI----LPDGEGNLWLGTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCE---EEE----EECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCee---EEE----EECCCCCEEEEec-CceeEEeCCCCeEE
Confidence 56788 9999998899999999887643 2221110000000 000 0122788999998 56999998754221
Q ss_pred cccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccc
Q 003327 775 KENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
....... ...+....+.+... .++.||+|+. ++|+++|.+++++
T Consensus 485 ~~~~~~~-------~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 485 TIEKEKD-------GTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp ECCBCTT-------CCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred Ecccccc-------ccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence 1100000 00111222222222 3689999998 7899999887654
No 87
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=4.9e-14 Score=149.74 Aligned_cols=240 Identities=13% Similarity=0.178 Sum_probs=182.4
Q ss_pred eCCCeEEEEecC-------CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEE
Q 003327 483 KDSDIYLFVGSH-------SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 483 ~d~~~~l~igs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~ 554 (829)
+.+++.+|+++. ++.|+.||..+++..+.+..+... ....++.+++.+|+++. ++.|+.||.++|+.++.+
T Consensus 49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 127 (353)
T 3vgz_A 49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP-FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL 127 (353)
T ss_dssp ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC-CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc-ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE
Confidence 445678888874 457999999999999988776543 46778888888888765 689999999999999988
Q ss_pred ecCCee---------eeeeeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe
Q 003327 555 QTCGEV---------KCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR 623 (829)
Q Consensus 555 ~~~~~~---------~~~~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~ 623 (829)
..+... .....++++++.+|+++ .++.|+.||..+++.++.+...+.....+.++++++.+|++..++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 207 (353)
T 3vgz_A 128 VLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE 207 (353)
T ss_dssp ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE
T ss_pred ecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe
Confidence 765321 23456677778888876 3678999999999999988744444456677777889999999999
Q ss_pred EEEEEccCCCceEEEeeccCC----cceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003327 624 LTAISVKALPFHTLWLHELEV----PAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~----~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
++.||..+ ++..+...... .......+.++++.+|+++.+ +.++++| .+++.++....+.+. .+....
T Consensus 208 i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~s~ 281 (353)
T 3vgz_A 208 LITIDTAD--NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESL----AVLFNP 281 (353)
T ss_dssp EEEEETTT--TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----CEEEET
T ss_pred EEEEECCC--CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCc----eEEECC
Confidence 99999988 88888776522 223446777788889888765 8899999 899998887765431 122222
Q ss_pred C-CeEEEEe-eCCeEEEEeCCCCcEEEEEecCCc
Q 003327 698 P-SQVLICS-RNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 698 ~-~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
+ +.+|+++ .++.|..||..+++.+..+..+..
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred CCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence 3 4588877 578999999999999887776543
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.70 E-value=2e-14 Score=155.89 Aligned_cols=273 Identities=11% Similarity=0.030 Sum_probs=188.7
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEec-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
++.+++++.|+.|+.||..+|+....+.. +........+.+++..+++|+.+|.++.||..+++.+..+..+.......
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 34578888899999999999999887765 34444555677778899999999999999999999988887665555555
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003327 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
..+ +..++.++.+|.+..||.... +..............+..+.+++..+++++.++.|.+|| .+++.+..+....
T Consensus 183 ~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 183 SWN--RHVLSSGSRSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred EEC--CCEEEEEcCCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 554 489999999999999999841 444555544444456667777888999999999999999 8888887765332
Q ss_pred -ceeecCcccccCCCeEEEEe--eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE--EccC
Q 003327 686 -PIFAGPCTSFALPSQVLICS--RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI--CTSS 760 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~i~~~t--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 760 (829)
.+.... ........+..++ .++.|+.||..+++.+..+.....+....+.. ++..+++ |+.+
T Consensus 260 ~~v~~~~-~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~g~~d 326 (401)
T 4aez_A 260 AAVKAVA-WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP------------HSKEIMSTHGFPD 326 (401)
T ss_dssp SCCCEEE-ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECTTT
T ss_pred ceEEEEE-ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC------------CCCeEEEEeecCC
Confidence 222211 1111223444443 69999999999999998887665554433222 3677777 5589
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEeccccccc
Q 003327 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
|.|.+||..++... .. .........+..... .+..|+.++.||.|+.||..+++..
T Consensus 327 g~i~v~~~~~~~~~----------~~-~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 327 NNLSIWSYSSSGLT----------KQ-VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEEEETTEEE----------EE-EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CcEEEEecCCccce----------eE-EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 99999999864210 11 111111122222222 3567888999999999999988754
No 89
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=5.4e-15 Score=174.76 Aligned_cols=315 Identities=10% Similarity=0.045 Sum_probs=186.3
Q ss_pred eeCC--CeEEEEecCCCcEEEEECCCCcEEEEEEc------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003327 482 LKDS--DIYLFVGSHSHKFICADAKRSSVLWEIKL------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 482 ~~d~--~~~l~igs~~g~l~~~d~~tg~~~w~~~~------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
..|. ++.||+++.++.|+.+|..++++.. +.. +.... ..++.+..+.+|+|+.+++|+++|..+++....
T Consensus 121 ~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i-~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~ 198 (781)
T 3v9f_A 121 TSSVQAGKGLWVCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQT-WTATEAEDGKLYIGHVEGGLSILSLNDKSVKHF 198 (781)
T ss_dssp EECSSTTSEEEEEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCE-EEEEEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EecCccCCCEEEEECCCCeeEEECCCCeEEe-eccCcccCCCccce-EEEEECCCCCEEEEecCCCeEEEcCCCCceEee
Confidence 4566 7999999955569999998887643 221 11111 233444467999999887899999888876532
Q ss_pred EecCC------eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEec
Q 003327 554 FQTCG------EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 554 ~~~~~------~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~ 620 (829)
..... ......++.+.++.||+|+.+ +|+.+|..+++........ ...+.+.. .+.++.+|++|.
T Consensus 199 ~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWigt~ 276 (781)
T 3v9f_A 199 VHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK-QLKDNKLWIATE 276 (781)
T ss_dssp CC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEE-ECTTSEEEEEES
T ss_pred ecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEE-ECCCCCEEEEeC
Confidence 11100 011223445567889999976 8999999888754322111 11222233 334789999998
Q ss_pred CCeEEEEEccCCCceEEEeec--------------cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-
Q 003327 621 SGRLTAISVKALPFHTLWLHE--------------LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG- 684 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~--------------~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~- 684 (829)
.++|+.++..+ +....... +..... .......++.+|+|+.+++|+.++ .++...+.....
T Consensus 277 ~~Gl~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~l~~~~v-~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 277 LNGIMILDLQQ--NQFLLPEQIRFEFIREGDNNYSLSNASA-RYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp SSCEEEEETTC--C---------CEEECBCSSTTSBSSSCE-EEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred CCCeEEECCCC--CeeeeeeccccccccCCCCCCCCCCCeE-EEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 67799999886 43322111 011111 122334578999999999999999 655543321110
Q ss_pred ---CceeecC---cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe---cCCccccccccccccccccccccCCCcEEE
Q 003327 685 ---GPIFAGP---CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS---VGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 685 ---~~~~~~~---~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
....... .+..+.++.||+|+.+++|+++|..++++.+... ........... ..++.+|
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~------------d~~g~lW 421 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLK------------DSEGNLW 421 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEE------------CTTSCEE
T ss_pred ccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEE------------CCCCCEE
Confidence 0111111 1235567899999988889999988776654211 01111111111 2278899
Q ss_pred EEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003327 756 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+|+.+++|+++|.+++..... ....+....+.+...+ ++.||+|+. ++|+++|..+++++
T Consensus 422 igt~~~Gl~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 422 FGTYLGNISYYNTRLKKFQII-----------ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEETTEEEEEECSSSCEEEEC-----------CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred EEeccCCEEEEcCCCCcEEEe-----------ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 999888899998765421110 0001222233333333 689999998 78999999888764
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.70 E-value=2.3e-14 Score=158.83 Aligned_cols=269 Identities=12% Similarity=0.096 Sum_probs=183.7
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+++.+++|+.|+.|..||..+++.++.+..+........+.+ ++.+++|+.||.+..||..+++.+..+..+.......
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 456899999999999999999999998876655455555554 3489999999999999999999998887655444444
Q ss_pred eee--cCCCEEEEEecCCeEEEEEccCCCceEEEeec---------------------cCCcceeeeeeeecCCEEEEEe
Q 003327 607 AID--EVHDVLYVASTSGRLTAISVKALPFHTLWLHE---------------------LEVPAFASLCITSANRHVICCL 663 (829)
Q Consensus 607 ~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---------------------~~~~~~~s~~~~~~~~~l~~~~ 663 (829)
.+. +++..+++++.+|.+..||..+ +....... ..........+..++..+++++
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 444 3456788999999999999886 43221110 0000111223456788999999
Q ss_pred eCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccc
Q 003327 664 VDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQ 741 (829)
Q Consensus 664 ~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 741 (829)
.++.|.+|| .+++.+..+.... .+..... ...+..+++++.||.|+.||..+|+.+..+..+.........
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----- 360 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIY--DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL----- 360 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-----
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE-----
Confidence 999999999 8888887765432 2322221 113457889999999999999999998887654432221111
Q ss_pred cccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEEC-CEEEEeeeCCeEEEEe
Q 003327 742 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG-GRVFVGCRDDYIYCIA 820 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~vg~~~g~l~~~d 820 (829)
++..+++++.||.|.+||..++. ..................+ ..+..|+ +|.++.||
T Consensus 361 --------~~~~l~s~s~dg~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 361 --------SDKFLVSAAADGSIRGWDANDYS-------------RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp --------CSSEEEEEETTSEEEEEETTTCC-------------EEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred --------cCCEEEEEeCCCcEEEEECCCCc-------------eeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 26789999999999999987541 1111111111111111234 4555555 99999999
Q ss_pred ccccccc
Q 003327 821 LETQHLE 827 (829)
Q Consensus 821 ~~tg~~~ 827 (829)
.++|++.
T Consensus 419 ~~~g~~~ 425 (464)
T 3v7d_B 419 LRSGKLV 425 (464)
T ss_dssp TTTCCEE
T ss_pred CCCCcEE
Confidence 9999864
No 91
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.2e-15 Score=162.41 Aligned_cols=269 Identities=12% Similarity=0.107 Sum_probs=200.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV- 560 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~- 560 (829)
+..++..+++|+.+|.|..|| .+++....+..+.....+..+.+++..+++++.|+.|+.||..+++.+..+......
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 344677899999999999999 678888887766665667788888889999999999999999999998887655432
Q ss_pred --------------eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003327 561 --------------KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 561 --------------~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
.....+.+ ++.+++++.++.|+.||..+++.+..+..+........+.+++..+++++.+|.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEE-TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 23333443 477899999999999999999888777666555666677777789999999999999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEE
Q 003327 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~ 704 (829)
||..+ ++....+...........+.+++ .+++++.++.+.+|| .+++.+..+.... .+....+.+ .+..++++
T Consensus 274 ~d~~~--~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 348 (425)
T 1r5m_A 274 WHGGN--GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ--DGQKYAVA 348 (425)
T ss_dssp ECSSS--BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT--TSSEEEEE
T ss_pred EECCC--CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC--CCCEEEEE
Confidence 99887 76666665444444566666666 889999999999999 8888887776532 333222111 24578888
Q ss_pred eeCCeEEEEeCCCCc--------------------EEEEEecCC---ccccccccccccccccccccCCCcEEEEEccCC
Q 003327 705 SRNGSIYSFEQESGN--------------------LLWEYSVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 705 t~~g~l~~~d~~tG~--------------------~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+.+|.|..||..+++ .+..+..+. .+....+ ..++.++++++.+|
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW------------NCAGNKISVAYSLQ 416 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE------------CTTSSEEEEEESSS
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc------------cCCCceEEEEecCc
Confidence 999999999999888 555555432 2222221 22377899999999
Q ss_pred cEEEEEee
Q 003327 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.|++||.+
T Consensus 417 ~i~iw~~~ 424 (425)
T 1r5m_A 417 EGSVVAIP 424 (425)
T ss_dssp CCEEEECC
T ss_pred eEEEEeec
Confidence 99999864
No 92
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=2.3e-14 Score=179.36 Aligned_cols=272 Identities=13% Similarity=0.078 Sum_probs=199.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.++..+.+|+.+|.|..||..+++....+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+....
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v 702 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 702 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE
Confidence 44567789999999999999999999988887776666778889999999999999999999999999998887766555
Q ss_pred eeeeeec--CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003327 562 CQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 562 ~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
....+.+ +...+++|+.|+.++.||..+++.+..+..+........+.+++..+++++.+|.+..||..+ ++....
T Consensus 703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~--~~~~~~ 780 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS--ANERKS 780 (1249)
T ss_dssp EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG--TEEEEE
T ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC--Ccccce
Confidence 5555554 345678899999999999999999988876666666677777788999999999999999987 665554
Q ss_pred eccCCc-------------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEE
Q 003327 640 HELEVP-------------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 640 ~~~~~~-------------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~ 703 (829)
...... ...+..+.+++..+++++ ++.+..|| .++........+. .+....+ ...+..+++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~ 857 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF--SPYDHLAVI 857 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEE--CSSTTEEEE
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEE--cCCCCEEEE
Confidence 432210 123445566677777765 78999999 8888776654322 2222111 113457888
Q ss_pred EeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 704 CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.+|.|..||..+++....+..+.......... .++..+++++.||.|.+||..
T Consensus 858 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-----------pdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-----------PDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-----------TTSSEEEEEETTSCEEEEEHH
T ss_pred EeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-----------CCCCEEEEEeCCCeEEEEEcc
Confidence 8999999999999998877665433321111111 125566666666777776644
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.7e-14 Score=148.80 Aligned_cols=263 Identities=12% Similarity=0.095 Sum_probs=190.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC---cEEEEEecCCeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG---DIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG---~~~w~~~~~~~~~ 561 (829)
++..+++|+.+|.|..||..+++....+..+.....+..+.+++..+++++.|+.+..|+..+. +.+..+..+....
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 4668999999999999999999888777776666667888889999999999999999997654 4555555444433
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003327 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
....+ +++.+++++.++.++.|| +++.+..+..+........+.+ +++.+++++.+|.+..||. ++.....
T Consensus 108 ~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~~~~~ 179 (313)
T 3odt_A 108 CSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN----DKVIKTF 179 (313)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET----TEEEEEE
T ss_pred EEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec----CceEEEE
Confidence 33344 357899999999999999 6777777766554444444433 6789999999999999993 3444444
Q ss_pred cc-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003327 641 EL-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 641 ~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.. .........+.+++ .+++++.++.+..|| .+++.+..+.... .+.... ...++.+++++.+|.|+.||..+
T Consensus 180 ~~~~~~~i~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK---LLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp CSSCSSCEEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE---ECTTSCEEEEETTSEEEEECTTT
T ss_pred eccCcccEEEEEEcCCC-eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE---EecCCCEEEEecCCEEEEEECCC
Confidence 43 33333455555554 488999999999999 8899887776432 333222 23355799999999999999999
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++....+..+........... ++.+++++.||.|++||.+++
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 256 GSLKQVITLPAISIWSVDCMS------------NGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CCEEEEEECSSSCEEEEEECT------------TSCEEEEETTSCEEEEESCGG
T ss_pred CceeEEEeccCceEEEEEEcc------------CCCEEEEeCCCcEEEEeCCCC
Confidence 999888776553222222221 334778899999999998865
No 94
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=1.7e-15 Score=154.00 Aligned_cols=190 Identities=14% Similarity=0.163 Sum_probs=135.3
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-ccc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIF 603 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~~~ 603 (829)
.++.+++++.++.|++||.+||+++|++..+. ..... .+.++ +.+++ +.++.+++||+ +|+.+|++..+. ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~-~~~pd-G~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV-AATKA-GEILF-SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE-EECTT-SCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe-EECCC-CCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 34678888889999999998999999998765 23332 33433 45566 56788999998 899999998752 222
Q ss_pred ccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcc------eeeeeeeecCCEEEEEeeCCeEEEEcCCCC
Q 003327 604 GSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPA------FASLCITSANRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 604 ~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~ 676 (829)
.+.....+++.+++.+. ++.++.++.+ |+.+|+....... .....+..+++.+++.+.++.|+++|.+|+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCC
Confidence 33344454566666665 6788888864 8999988653221 112234556777777777899999994499
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEE-eeCCeEEEEeCCCCcEEEEEec
Q 003327 677 IIWRCRTGGPIFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
++|++......++.+ ...++.+++. +.++.|+++|++||+++|++..
T Consensus 157 ~~w~~~~~~~~~~~~---~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 157 LLNSVKLSGTPFSSA---FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEEECSSCCCEEE---ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEEEEECCCCcccee---EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 999998765555544 2335555554 5566899999999999999874
No 95
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3.5e-15 Score=176.44 Aligned_cols=309 Identities=9% Similarity=0.068 Sum_probs=187.2
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEc-------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
..|.++.||+|+.+ .|+.+|..++++...... ..... ..+..+..+.+|+|+..++|+.+|..+++.....
T Consensus 217 ~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 294 (781)
T 3v9f_A 217 YKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYI-FSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE 294 (781)
T ss_dssp EECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCE-EEEEECTTSEEEEEESSSCEEEEETTCC------
T ss_pred EEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceE-EEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee
Confidence 45678999999987 599999988876532111 11111 3344455679999998678999998887765422
Q ss_pred e-------cC---Ce---eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------CCcccccceeecCC
Q 003327 555 Q-------TC---GE---VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------GGSIFGSPAIDEVH 612 (829)
Q Consensus 555 ~-------~~---~~---~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------~~~~~~~~~~~~~~ 612 (829)
. .. .. .....++.+..+.||+|+.+++|+.++..++...+.... ....+.+.+.+ .+
T Consensus 295 ~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~ 373 (781)
T 3v9f_A 295 QIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD-GQ 373 (781)
T ss_dssp ---CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC-TT
T ss_pred ccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc-CC
Confidence 2 10 01 112234555678999999999999999887765443211 11222233333 36
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec---CC
Q 003327 613 DVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT---GG 685 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~---~~ 685 (829)
+.||+||.+++|+.++..+ +...+... .......+. ....++.+|+|+.+++|+.++ .+++....... ..
T Consensus 374 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGK--RVAIYNKENRELLSNSVLCS-LKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELL 450 (781)
T ss_dssp SCEEEEEBSSCEEEEETTE--EEEECC-----CCCSBEEEE-EECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCC
T ss_pred CCEEEEeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEE-EECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCC
Confidence 8899999877899999875 44332211 111111122 223478999999888999999 66654322111 11
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCC-----ccccccccccccccccccccCCCcEEEEEccC
Q 003327 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD-----PITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
.+. ++..+.++.+|+|+. ++|+++|..++++........ ....... ...++.+|+|+.+
T Consensus 451 ~v~---~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------------~d~~g~lWigt~~ 514 (781)
T 3v9f_A 451 DVR---VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA------------QDSEGRFWIGTFG 514 (781)
T ss_dssp CEE---EEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE------------ECTTCCEEEEESS
T ss_pred eEE---EEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEE------------EcCCCCEEEEEcC
Confidence 122 233566889999998 679999999888755433221 0111111 2237899999987
Q ss_pred CcEEEEEeecCccccccccccccceeeeee----ccCCcccccceE-ECCEEEEeeeCCeE-EEEeccccccc
Q 003327 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKL----ELQGDIFSSPVM-IGGRVFVGCRDDYI-YCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~l~vg~~~g~l-~~~d~~tg~~~ 827 (829)
++|+++|.+++. +..+ .++...+.+... .++.||+++. ++| ++||.++++++
T Consensus 515 ~Gl~~~~~~~~~--------------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 515 GGVGIYTPDMQL--------------VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCEEEECTTCCE--------------EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE
T ss_pred CCEEEEeCCCCe--------------EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE
Confidence 779999876442 1122 123333333333 3689999998 456 99999888764
No 96
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=1.7e-14 Score=180.64 Aligned_cols=337 Identities=9% Similarity=-0.002 Sum_probs=228.8
Q ss_pred cccccccccccccc-----cc--eEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee--CCcEEEE
Q 003327 463 QELWKVHMESCVDA-----SP--LVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA--DFSQVVV 533 (829)
Q Consensus 463 ~~~W~~~~~~~~~~-----sp--~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~--~~~~v~v 533 (829)
-.+|....+.++.. .+ .+.++.++..+.+++.|+.|..||..+|+....+..+.....+..+++ ++..+++
T Consensus 639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 34577766554311 11 233455677899999999999999999999988887766666677766 4447888
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--------------
Q 003327 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------------- 599 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------------- 599 (829)
|+.|+.|..||..+++.+..+..+........+.+++..+++++.||.|..||..+++....+...
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 999999999999999999887766655556667777889999999999999999888766544221
Q ss_pred -----------------------------------------CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003327 600 -----------------------------------------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 600 -----------------------------------------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
........+.+++..+++++.+|.+..||..+ +....
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~--~~~~~ 876 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVA 876 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT--TEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--Cceee
Confidence 11122334455567778888888888888887 77776
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE-------------------------------EEEeecC--
Q 003327 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI-------------------------------IWRCRTG-- 684 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~-------------------------------~w~~~~~-- 684 (829)
..........+..+.+++..++.++.++.+..|+ .++.. .+.....
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 6665555556777788888999999999999998 42110 0110000
Q ss_pred -----CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc
Q 003327 685 -----GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 759 (829)
Q Consensus 685 -----~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 759 (829)
..+.... ....+..+.+|+.+|.|+.||..+++....+..+......... ..++..+++++.
T Consensus 957 ~~~~~~~i~~~~--~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~-----------s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A 957 DYLPEAQVSCCC--LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF-----------TADGKTLISSSE 1023 (1249)
T ss_dssp EEECCSCEEEEE--ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEE-----------CSSSSCEEEECS
T ss_pred EEcccCcEEEEE--EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEE-----------CCCCCEEEEEcC
Confidence 0111110 1112457888999999999999999887665433322222111 223788999999
Q ss_pred CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003327 760 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 760 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
||.|.+||..++.. .........+.......++.++.++.+|.++.||..+++..
T Consensus 1024 dg~i~vwd~~~~~~-------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDY-------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp SSBEEEEETTTTEE-------------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred CCEEEEEECCCCce-------------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 99999999886521 11111112221111113678999999999999999988753
No 97
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.69 E-value=6.8e-15 Score=159.32 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=195.1
Q ss_pred eEEEEecCCCcEEEEECCCCc------EEEEEEcCCceeeceEEeeC----C---cEEEEEEeCCEEEEEEcCCCcE---
Q 003327 487 IYLFVGSHSHKFICADAKRSS------VLWEIKLEGRIECSAAVLAD----F---SQVVVGCYKGKIYFLDYLTGDI--- 550 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~------~~w~~~~~~~~~~~~~~~~~----~---~~v~vg~~dg~l~~~d~~tG~~--- 550 (829)
..++.|+.||.|..||..+++ ....+..+.....+..+.++ + ..+++++.|+.|+.||..+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 678999999999999999988 56666666555567778877 7 8999999999999999998886
Q ss_pred --EEEEecC-----Ceeeeeeeee----cCCCE-EEEeccCCeEEEEEcCC------CeEEE-----eec-------cCC
Q 003327 551 --YWTFQTC-----GEVKCQPVVD----APRQL-IWCGSHDHNLYALDFRN------YRCVY-----KLP-------CGG 600 (829)
Q Consensus 551 --~w~~~~~-----~~~~~~~~~~----~~~~~-i~~gs~~g~l~~~d~~t------g~~~w-----~~~-------~~~ 600 (829)
...+..+ ........+. +++.. +++++.++.|+.||..+ ++.+. .+. .+.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 6666555 2334445566 66788 99999999999999988 55443 332 233
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc---C---CcceeeeeeeecCCEEEEEeeC---CeEEEE
Q 003327 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL---E---VPAFASLCITSANRHVICCLVD---GHVVAL 671 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~---~---~~~~~s~~~~~~~~~l~~~~~~---g~i~~~ 671 (829)
.......+.+++ .+++++.+|.+..||+.+ ++.+..+.. . .....+..+.+++..+++++.+ +.|.+|
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCC--CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 344555666666 888899999999999988 888887776 3 4445667777788999999999 999999
Q ss_pred c-CCCCEEEEeec--------------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe------cC---
Q 003327 672 D-SSGSIIWRCRT--------------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS------VG--- 727 (829)
Q Consensus 672 d-~~g~~~w~~~~--------------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~------~~--- 727 (829)
| .+++.+..+.. ...+....+. ..+..++.++.||.|+.||..+++.+..+. ..
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence 9 88988877654 2223222211 124578888999999999999999988777 22
Q ss_pred -------------CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 728 -------------DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 728 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+....+......+. .....+..+++++.||.|.+||.+++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSG--MGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBS--TTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEecccccccc--ccccccceEEEecCCCcEEEEEcCCC
Confidence 2222211111100000 00000168999999999999998865
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.69 E-value=2.3e-14 Score=164.91 Aligned_cols=304 Identities=12% Similarity=0.010 Sum_probs=203.3
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcEEEEE-e---cCCe
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDIYWTF-Q---TCGE 559 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~~w~~-~---~~~~ 559 (829)
.++.++.++.+..||..+++....+..+.. ...+..+.++ +..+++++.|+.|+.||..+++.+..+ . .+..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 788999999999999999999888776655 5567788888 889999999999999999999999887 3 3333
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC----cccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
......+. ++..+++++.++.+..||..+++.+..+.... ......... +++.+++++.+|.++.||..+ ++
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~--~~ 330 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH--DE 330 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE--EE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC--Cc
Confidence 33444555 67889999999999999999999988877652 122222333 468999999999999999887 76
Q ss_pred EEEeeccCCcceeeeee--------------------------------eecCCEEEEEeeCCeEEEEc-CC--------
Q 003327 636 TLWLHELEVPAFASLCI--------------------------------TSANRHVICCLVDGHVVALD-SS-------- 674 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~--------------------------------~~~~~~l~~~~~~g~i~~~d-~~-------- 674 (829)
.+...........+..+ ...++.++.++.++.+..|+ .+
T Consensus 331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 66555433221111111 02255666666677776666 32
Q ss_pred --------------------------CCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEE-EEec
Q 003327 675 --------------------------GSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLW-EYSV 726 (829)
Q Consensus 675 --------------------------g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w-~~~~ 726 (829)
|+.+..+.....+... ... +..+++++. +|.|+.||..+++... .+..
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~ 486 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV---SLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE---EEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE---EEc-CCEEEEeecCCCeEEEEECCCccccccccCC
Confidence 2222222222222111 111 567888888 9999999998876642 1111
Q ss_pred -CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceE--
Q 003327 727 -GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVM-- 802 (829)
Q Consensus 727 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 802 (829)
...+.... ...++.++++++.+|.|++||..++. ....... ....+.+..+
T Consensus 487 ~~~~v~~~~------------~s~~g~~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 487 LRAKPSYIS------------ISPSETYIAAGDVMGKILLYDLQSRE-------------VKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp CSSCEEEEE------------ECTTSSEEEEEETTSCEEEEETTTTE-------------EEECCSCCCSSCEEEEEECC
T ss_pred ccCceEEEE------------ECCCCCEEEEcCCCCeEEEeeCCCCc-------------ceeEeecCCCCceeEEEEcC
Confidence 11121111 12347899999999999999998652 2222211 1122222222
Q ss_pred ----------ECCEEEEeeeCCeEEEEecccc
Q 003327 803 ----------IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 803 ----------~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+..|..++.||.|+.||..++
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 3567888999999999999886
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.69 E-value=1.8e-14 Score=158.01 Aligned_cols=293 Identities=10% Similarity=0.028 Sum_probs=195.7
Q ss_pred cEEEEECCCC--cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecC
Q 003327 497 KFICADAKRS--SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAP 569 (829)
Q Consensus 497 ~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~ 569 (829)
.|+.+|..++ +....+..+.... +..+++++..+++++.++.|+.||..+|+.+..... +........+.++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPK-SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBC-CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCCCce-EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 7888888777 5555555555432 566766443444445567899999999998864322 2222333445555
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCccee
Q 003327 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFA 648 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 648 (829)
+..+++++.++.++.||.++++.++.+..+........+++++..+|++. .++.|+.||+.+ ++.++....... ..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-~~ 257 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT--KLEIRKTDKIGL-PR 257 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEECCCCSE-EE
T ss_pred CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC--CcEEEEecCCCC-ce
Confidence 55666778889999999999999998876655556677777778887666 689999999987 888777665433 35
Q ss_pred eeeeeecCCEEEEEee--------CCeEEEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEE-eeCCeEEEEeCCC
Q 003327 649 SLCITSANRHVICCLV--------DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~--------~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~-t~~g~l~~~d~~t 717 (829)
...+.++++.+++++. ++.|+.|| .+++.+........+... ....++ .+|+. +.++.|+.||..+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHI---VSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEE---EECSSTTEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceE---EECCCCCEEEEEecCCCEEEEEECCC
Confidence 5667777889999884 77999999 888877665433222221 122233 56665 7789999999999
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc---------------CCcEEEEEeecCccccccccccc
Q 003327 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS---------------SGSIHILRVNLDVTGKENQSKDH 782 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~G~l~~~d~~~~~~~~~~~~~~~ 782 (829)
++..+.+.....+....+. .++..+++++. ||.|++||..++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s------------~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----------- 391 (433)
T 3bws_A 335 KKVQKSIPVFDKPNTIALS------------PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----------- 391 (433)
T ss_dssp TEEEEEEECSSSEEEEEEC------------TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-----------
T ss_pred CcEEEEecCCCCCCeEEEc------------CCCCEEEEEecCCCccccccccccccceEEEEEECCCC-----------
Confidence 9998877655443322222 22667777765 579999998765
Q ss_pred cceeeeeeccCCcccccceE--ECCEEEEeee-CCeEEEEecc
Q 003327 783 MVQEFAKLELQGDIFSSPVM--IGGRVFVGCR-DDYIYCIALE 822 (829)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~-~g~l~~~d~~ 822 (829)
+....+.... ......+ .+..|++++. ++.++.|+.+
T Consensus 392 --~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 392 --TVKEFWEAGN-QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --EEEEEEECSS-SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --cEEEEecCCC-CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 2233333222 1222222 3457787775 9999999875
No 100
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.68 E-value=6.4e-14 Score=159.95 Aligned_cols=303 Identities=10% Similarity=0.046 Sum_probs=211.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..+..++.++.+..||. +++....+..+.....+..+++++..+++++.|+.|..||..+ +.+..+..+.....
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVW 348 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEE
T ss_pred cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEE
Confidence 345678889999999999996 4676666655554455677888888999999999999999654 44444444444444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+.+++.++.+..|| .+++.+..+..+........+.+++..++.++.++.|..||.. ++.+.....
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~---~~~~~~~~~ 424 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTG 424 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---CCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEecC
Confidence 556677788899999999999999 5677777776665555666777777889999999999999964 666666555
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003327 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
.........+.+++..++.++.++.+..||.+++.+....... .+....+.+ .+..+..++.|+.|..|| .+|+.+
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp--d~~~las~~~d~~i~iw~-~~~~~~ 501 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWN-RNGQLL 501 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT--TSCEEEEEETTSEEEEEE-TTSCEE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEc-CCCCEE
Confidence 5555566777888899999999999999996677766554322 232221111 234677788999999999 568887
Q ss_pred EEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003327 722 WEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 722 w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (829)
..+..+.. +....+ .+++.++++++.||.|++||.. + +....+.-+...+.+.
T Consensus 502 ~~~~~h~~~v~~l~~------------s~dg~~l~s~~~dg~v~lwd~~-~-------------~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAF------------SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVWGV 555 (577)
T ss_dssp EEEECCSSCEEEEEE------------CTTSSCEEEEETTSEEEEECTT-S-------------CEEEEEECCSSCEEEE
T ss_pred EEEeCCCCCEEEEEE------------cCCCCEEEEEECcCEEEEEeCC-C-------------CEEEEEcCCCCCEEEE
Confidence 77664432 222211 2237889999999999999853 2 2222222222222222
Q ss_pred eE--ECCEEEEeeeCCeEEEEe
Q 003327 801 VM--IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 801 ~~--~~~~l~vg~~~g~l~~~d 820 (829)
.+ ++..|+.++.|+.|..||
T Consensus 556 ~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 556 AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEeCCCEEEEeC
Confidence 22 355788899999999987
No 101
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.68 E-value=1.7e-14 Score=152.11 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=159.8
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003327 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
.+..++++ +.+++|+.||.|..||..+|+.+.... .+.....+..+.+++..|++|+.|+.|+.||..+++++..
T Consensus 86 ~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 86 ADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp EEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 35566666 578899999999999999998654332 2344445556777888999999999999999999999988
Q ss_pred eccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCc--ceeeeeeeecC-CEEEEEeeCCeEEEE
Q 003327 596 LPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSAN-RHVICCLVDGHVVAL 671 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~-~~l~~~~~~g~i~~~ 671 (829)
+..+........+..++ ..++.++.||.|..||+.+ ++....+..... ...+..+.+.+ ..++.|+.++.|.+|
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC--PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS--SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCcCCceEEEEecCCCCCceeeeccccccccccccc--cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 87665555555565544 4567788999999999987 766555433222 22344555544 466778899999999
Q ss_pred c-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccC
Q 003327 672 D-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 672 d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
| .+++.+..+.... .+....+ ..+....|..++.||.|+.||..++++.....+...+....+...
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~----------- 310 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL----------- 310 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS-----------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC-----------
Confidence 9 8888887766433 2322211 111123577889999999999999987543223333333222211
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003327 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
...+++.++.||.|.+|+..+.
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEEcCCCeEEEEECCCC
Confidence 1345678889999999988743
No 102
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.68 E-value=7.2e-14 Score=148.45 Aligned_cols=283 Identities=13% Similarity=0.042 Sum_probs=190.6
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003327 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+...+.+..+++++..+++|+.|+.|..||..+++....+..+........+.+++..+.+|+.|+.+..|+...+.
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 33444444566777888899999999999999999999888777665555566777788899999999999999875431
Q ss_pred ------EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee--cCCEEEEEe
Q 003327 592 ------CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS--ANRHVICCL 663 (829)
Q Consensus 592 ------~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~--~~~~l~~~~ 663 (829)
....+..+........+.+++..++.++.+|.+..||+++ ++.+..+...........+.+ ++..++.++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 1112222333444555666677899999999999999988 777766654444334444433 457899999
Q ss_pred eCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccc
Q 003327 664 VDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQ 741 (829)
Q Consensus 664 ~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 741 (829)
.++.+..|| .+++.+..+.... .+....+.+ .+..++.++.|+.|..||..+++.+..+...........
T Consensus 218 ~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~------ 289 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS------ 289 (354)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE------
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE------
Confidence 999999999 8888876665432 232222111 245788899999999999998877655443221110000
Q ss_pred cccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEE
Q 003327 742 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~ 819 (829)
.....++.++++++.||.|++||..++. ....+.-+...+.+..+ .+..|..|+.||.|+.|
T Consensus 290 ---~~~s~~g~~l~~g~~d~~i~vwd~~~~~-------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 290 ---VDFSLSGRLLFAGYNDYTINVWDVLKGS-------------RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ---EEECTTSSEEEEEETTSCEEEEETTTCS-------------EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ---EEEeCCCCEEEEEECCCcEEEEECCCCc-------------eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 0112347899999999999999987551 12222212222222222 35578889999999988
Q ss_pred e
Q 003327 820 A 820 (829)
Q Consensus 820 d 820 (829)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.68 E-value=1.1e-13 Score=146.20 Aligned_cols=280 Identities=11% Similarity=0.057 Sum_probs=194.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE-----EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSV-----LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~-----~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.+..|+.|+.|+.|..||..+++. ...+..+.....+..+++++..+++++.|+.|+.|+...+...........
T Consensus 50 ~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~ 129 (340)
T 4aow_A 50 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129 (340)
T ss_dssp CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC
Confidence 356888999999999999876542 333444445556778888999999999999999999988888777666555
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee-ccCCcccccceee--cCCCEEEEEecCCeEEEEEccCCCceE
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-PCGGSIFGSPAID--EVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~-~~~~~~~~~~~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
......+...+..+++++.|+.+..||.......... ...........+. .....++.++.++.+..||..+ ++.
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~ 207 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKL 207 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--TEE
T ss_pred ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--Cce
Confidence 4455555666788999999999999998766543322 2222222222222 2234566778899999999988 777
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
+..+........+..+.+++..++.++.++.+..|| .+++.+..+.....+.... ...++.+++++.++.|..||.
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC---FSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE---ECSSSSEEEEEETTEEEEEET
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee---cCCCCceeeccCCCEEEEEEC
Confidence 776665555556677778888999999999999999 8888887776655443322 234667888889999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++...+.+.............. .+..-...+++.++++|+.||.|++||..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 285 EGKIIVDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTTEEEEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCeEEEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99888876653221110000000 0000112234789999999999999999876
No 104
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.68 E-value=1e-13 Score=144.95 Aligned_cols=284 Identities=13% Similarity=0.075 Sum_probs=188.5
Q ss_pred EEEcCCceeeceEEeeCC-cEEEEEEeCCEEEEEEcCC-----CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEE
Q 003327 511 EIKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLT-----GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYA 584 (829)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~-~~v~vg~~dg~l~~~d~~t-----G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~ 584 (829)
++..+.....+..+.+++ ..+++|+.|+.|+.||..+ +..+..+..+........+.+++..+++++.|+.|+.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 344444444456666543 6899999999999999754 3345556656555555667777889999999999999
Q ss_pred EEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee------cCCE
Q 003327 585 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS------ANRH 658 (829)
Q Consensus 585 ~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~------~~~~ 658 (829)
||..+|+.+..+..+.....+..+.+++..++.++.|+.+..||.+. ..+..............+.+ ++..
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 99999999888776666566666777778899999999999999874 44444433333233333333 3447
Q ss_pred EEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccc
Q 003327 659 VICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI 736 (829)
Q Consensus 659 l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 736 (829)
++.++.++.|..|| .+++....+... ..+....+.+ .+..+..++.||.|..||..+++.+..+.....+....+.
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 246 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence 88899999999999 777766554432 2232222111 2346888899999999999999998887766554433322
Q ss_pred ccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec--cC------CcccccceE--ECCE
Q 003327 737 DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE--LQ------GDIFSSPVM--IGGR 806 (829)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~--~~~~ 806 (829)
. ++..+++++. +++.+|+.+.+. ...... .. ...+.+... ++..
T Consensus 247 p------------~~~~la~~~~-~~i~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 247 P------------NRYWLAAATA-TGIKVFSLDPQY-------------LVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp S------------SSSEEEEEET-TEEEEEEETTEE-------------EEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred C------------CCCEEEEEcC-CCcEEEEeCcCe-------------eeeccCccccccccCcCcceeEEEECCCCCE
Confidence 2 2556666654 558899876431 111111 00 001111111 3568
Q ss_pred EEEeeeCCeEEEEeccccc
Q 003327 807 VFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 807 l~vg~~~g~l~~~d~~tg~ 825 (829)
|+.|+.||.|+.||..|++
T Consensus 301 l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp EEEEETTSCEEEEEEEEC-
T ss_pred EEEeecCceEEEEEEeecC
Confidence 8899999999999998764
No 105
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.67 E-value=2e-14 Score=153.50 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=184.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeC----CcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLAD----FSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~----~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
.+..+++++.++.|..||..+++.+..+.. +.....+..++++ +..+++|+.|+.|+.||..+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 355677777788999999998887655442 1233446677777 5689999999999999999999998887
Q ss_pred cCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEee---ccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 556 TCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKL---PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~---~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+........+.+ ++..+++++.||.|+.||..+++.+..+ ..+........+.+++..+++++.+|.|..||..+
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 6555555556666 6788999999999999999999988877 34445555666777778999999999999999886
Q ss_pred CCceEEEeecc----------------------------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE-----
Q 003327 632 LPFHTLWLHEL----------------------------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI----- 677 (829)
Q Consensus 632 ~~g~~~w~~~~----------------------------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~----- 677 (829)
++....... ......+..+. ++.+++++.++.|.+|| .++..
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 193 --KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp --HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred --CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 543322211 11112233333 77899999999999999 66543
Q ss_pred ---------EEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE----EEecC---Ccccccccccccc
Q 003327 678 ---------IWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW----EYSVG---DPITASAYIDEHL 740 (829)
Q Consensus 678 ---------~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w----~~~~~---~~~~~~~~~~~~~ 740 (829)
+..+.... .+....+.+...+..+++++.+|.|+.||..+++... .+..+ ..+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 343 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF----- 343 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE-----
T ss_pred ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe-----
Confidence 22222211 1111111111114578888999999999999886432 33322 22222221
Q ss_pred ccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 741 QLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 741 ~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..++..+++++.||.|++||..
T Consensus 344 -------s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 344 -------SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -------CTTSSEEEEEETTSEEEEEEC-
T ss_pred -------CCCCCeEEEEeCCCEEEEEEec
Confidence 2237899999999999999875
No 106
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.67 E-value=2.2e-14 Score=156.66 Aligned_cols=232 Identities=11% Similarity=-0.020 Sum_probs=174.5
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
...++..+++|+.++.|..||..+++....+..+.....+..+++++..+++++.|+.|+.||..+++.+..+..+....
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 184 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence 34466789999999999999999998876655555555677888888899999999999999999999888887666555
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC------------------------cccccceeecCCCEEEE
Q 003327 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG------------------------SIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~------------------------~~~~~~~~~~~~~~l~v 617 (829)
....+.+++..+++++.|+.++.||..+++.+..+.... .....+.+++++..+++
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 666777778899999999999999999999988876421 12233445566678999
Q ss_pred EecCCeEEEEEccCCCceEEEeeccC-CcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCE-EEEeec--CCceeecC
Q 003327 618 ASTSGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANR-HVICCLVDGHVVALD-SSGSI-IWRCRT--GGPIFAGP 691 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~-~w~~~~--~~~~~~~~ 691 (829)
++.+|.+..||+.+ ++........ .....+..+.+++. .+++++.+|.|.+|| .+++. +..+.. ...+...
T Consensus 265 ~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 265 GHVSGVITVHNVFS--KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV- 341 (420)
T ss_dssp EETTSCEEEEETTT--CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred EcCCCeEEEEECCC--CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence 99999999999987 7666655432 33345667777777 899999999999999 77643 444432 2223222
Q ss_pred cccccCCCeEEEEeeCCeEEEEeCCCC
Q 003327 692 CTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 692 ~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
. ...+..++.++.||.|..|+..++
T Consensus 342 ~--~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 342 Y--FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp E--EETTEEEEEETTTEEEEEEEECCT
T ss_pred E--eCCCCEEEEecCCccEEEEeccCC
Confidence 1 122446778888999999998764
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.66 E-value=5.8e-14 Score=153.96 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=186.8
Q ss_pred CeEEEE-ecCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003327 486 DIYLFV-GSHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 486 ~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
++.+++ ++.++.|+.||..+|+....... +.....+..+.+++..+++++.|+.|+.||..+++.++.+..+..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 444544 55677899999999998754322 222334556666766677777889999999999999998876555
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe--------cCCeEEEEEcc
Q 003327 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS--------TSGRLTAISVK 630 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t--------~~g~l~~~~~~ 630 (829)
......+.+++..+++++ .++.|+.||..+++.++.+..+.. .....+++++..+++++ .+|.|+.||+.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 555667777777786554 789999999999999888776544 34456666677898887 47899999998
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEee-
Q 003327 631 ALPFHTLWLHELEVPAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSR- 706 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~- 706 (829)
+ ++.+....... ......+.++++.+++. +.++.+.+|| .+++.++.......+.... ...+ ..+|+++.
T Consensus 292 ~--~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~---~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 292 K--EKLIDTIGPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIA---LSPDGKYLYVSCRG 365 (433)
T ss_dssp T--TEEEEEEEEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE---ECTTSSEEEEEECC
T ss_pred C--CcEEeeccCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEE---EcCCCCEEEEEecC
Confidence 7 77766653322 22345666677777665 6789999999 8888887776554443222 2223 46787765
Q ss_pred --------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003327 707 --------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 707 --------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
||.|+.||..+++.+..+.....+....+ ..++..+++++. ++.|.+|+.+
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDV------------SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEE------------CTTSCEEEEEETTTTEEEEEEET
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEE------------cCCCCEEEEEECCCCeEEEEEec
Confidence 46999999999999887765443322211 123677777764 9999999875
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.66 E-value=4.3e-14 Score=153.43 Aligned_cols=274 Identities=14% Similarity=0.050 Sum_probs=190.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE-------------cCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK-------------LEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~-------------~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
++..+++|+.+|.|..||..+++....+. .+.....+..+.+ ++..+++++.|+.|+.||..+++.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 57789999999999999999887654433 1333344566766 556888999999999999999999
Q ss_pred EEEEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEE
Q 003327 551 YWTFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAI 627 (829)
Q Consensus 551 ~w~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~ 627 (829)
...+.....+....... .+...+++++.++.++.||..+++.+..+..+........+.+++. .+++++.+|.+..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214 (408)
T ss_dssp EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEE
Confidence 98887665544333222 1344889999999999999999988887776655555666666556 57889999999999
Q ss_pred EccCCCce-EEEee---------------ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce---
Q 003327 628 SVKALPFH-TLWLH---------------ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI--- 687 (829)
Q Consensus 628 ~~~~~~g~-~~w~~---------------~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~--- 687 (829)
|..+ +. ..... ........+..+.+++..+++++.++.+.+|| .+++...........
T Consensus 215 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 292 (408)
T 4a11_B 215 DVRR--ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292 (408)
T ss_dssp ETTC--SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS
T ss_pred ECCC--CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc
Confidence 9876 32 22221 11122234556777788999999999999999 777654332211100
Q ss_pred eecC-cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003327 688 FAGP-CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 688 ~~~~-~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.... .........+.+++.++.|+.||..+++.+..+..+.......... .++..+++++.||.|.+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ-----------SNFQELYSGSRDCNILAW 361 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE-----------TTTTEEEEEETTSCEEEE
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc-----------CCCCEEEEECCCCeEEEE
Confidence 0000 0112234567788889999999999999988876443322222221 237889999999999999
Q ss_pred EeecC
Q 003327 767 RVNLD 771 (829)
Q Consensus 767 d~~~~ 771 (829)
|..++
T Consensus 362 ~~~~~ 366 (408)
T 4a11_B 362 VPSLY 366 (408)
T ss_dssp EECC-
T ss_pred eCCCC
Confidence 99865
No 109
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.66 E-value=3.1e-14 Score=153.02 Aligned_cols=301 Identities=14% Similarity=0.057 Sum_probs=192.3
Q ss_pred ECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCe
Q 003327 502 DAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 502 d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
++.+......+..+...+.+..+++++..+++|+.|+.|..||..+++....+..+........+.+++..+.+|+.|+.
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 33344444445555555557778888889999999999999999999998888776655555667778889999999999
Q ss_pred EEEEEcCCCeE-------EEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeecc-----CCccee
Q 003327 582 LYALDFRNYRC-------VYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHEL-----EVPAFA 648 (829)
Q Consensus 582 l~~~d~~tg~~-------~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~-----~~~~~~ 648 (829)
+..||..++.. ...+..+.....+..+.+ .+..++.++.|+.+..||+.+ |+.+..+.. ......
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeE
Confidence 99999865321 111111222223333333 245689999999999999988 776655422 112223
Q ss_pred eeeeee-cCCEEEEEeeCCeEEEEc-C-CCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEE
Q 003327 649 SLCITS-ANRHVICCLVDGHVVALD-S-SGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 649 s~~~~~-~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~ 724 (829)
+..+.. ++..++.|+.|+.|..|| . .++.+..+... ..+.+..+.+ .+..++.++.||.|..||..+|+.+..+
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT--TSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec--CCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 333333 567888999999999999 5 44554444322 2222221111 2357888899999999999999887665
Q ss_pred ecCCcccc--ccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee----ccCCcccc
Q 003327 725 SVGDPITA--SAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL----ELQGDIFS 798 (829)
Q Consensus 725 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 798 (829)
........ .+.+ ......+++.++++|+.+|.|++||...+. ..... ......+.
T Consensus 288 ~~~~~~~~~~~~~v------~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-------------~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 288 NREPDRNDNELPIV------TSVAFSISGRLLFAGYSNGDCYVWDTLLAE-------------MVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CCCCSSSCCSSCSC------SEEEECSSSSEEEEECTTSCEEEEETTTCC-------------EEEEECCSCSSCCCCCC
T ss_pred cccccccccccCce------EEEEECCCCCEEEEEECCCCEEEEECCCCc-------------eEEEEecccCCCCCceE
Confidence 53321100 0000 001123348899999999999999986542 11111 11112222
Q ss_pred cceE--ECCEEEEeeeCCeEEEEeccccc
Q 003327 799 SPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 799 ~~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+..+ .+..|+.|+.||.|..|+...++
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 2222 45688889999999999987654
No 110
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.3e-15 Score=161.97 Aligned_cols=271 Identities=10% Similarity=0.031 Sum_probs=186.6
Q ss_pred eEEEEe----------cCCCcEEEEECCCCc---EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC----Cc
Q 003327 487 IYLFVG----------SHSHKFICADAKRSS---VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT----GD 549 (829)
Q Consensus 487 ~~l~ig----------s~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t----G~ 549 (829)
..+++| +.++.|..||..+++ .+..+.. .....+..+++++..+++++.|+.|+.||..+ .+
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 104 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN 104 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc
Confidence 367777 788899999998875 3333332 23345677888888999999999999999887 34
Q ss_pred EEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCe------EEEee---ccCCcccccceeecC-CCEEEEE
Q 003327 550 IYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYR------CVYKL---PCGGSIFGSPAIDEV-HDVLYVA 618 (829)
Q Consensus 550 ~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~------~~w~~---~~~~~~~~~~~~~~~-~~~l~v~ 618 (829)
.+..+..+........+.++ +..+++++.|+.|+.||..+++ ..... ..+........+.++ +..++++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 66655544444444556655 7789999999999999999886 33332 222334445566665 5678888
Q ss_pred ecCCeEEEEEccCCCceEEEeeccC------CcceeeeeeeecC-CEEEEEeeCC---eEEEEc-CCC-CEEEEee--cC
Q 003327 619 STSGRLTAISVKALPFHTLWLHELE------VPAFASLCITSAN-RHVICCLVDG---HVVALD-SSG-SIIWRCR--TG 684 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~------~~~~~s~~~~~~~-~~l~~~~~~g---~i~~~d-~~g-~~~w~~~--~~ 684 (829)
+.+|.|..||+.+ ++.+...... .....+..+.+++ ..+++++.++ .|..|| .++ +.+..+. ..
T Consensus 185 ~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~ 262 (416)
T 2pm9_A 185 GSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ 262 (416)
T ss_dssp SSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS
T ss_pred cCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc
Confidence 9999999999988 7777776654 3334556666665 5788888887 999999 665 4444443 22
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCC-cEEEEEccCCcE
Q 003327 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID-RLVCICTSSGSI 763 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~G~l 763 (829)
..+....+. ...+..++.++.||.|+.||..+++.+..+..+.......... .++ ..+++++.||.|
T Consensus 263 ~~v~~~~~s-~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 263 KGILSLDWC-HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA-----------PEAPDLFACASFDNKI 330 (416)
T ss_dssp SCEEEEEEC-SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC-----------TTCTTEEEECCSSSEE
T ss_pred CceeEEEeC-CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC-----------CCCCCEEEEEecCCcE
Confidence 233222211 1134578888999999999999999887776543322222111 124 689999999999
Q ss_pred EEEEeecCc
Q 003327 764 HILRVNLDV 772 (829)
Q Consensus 764 ~~~d~~~~~ 772 (829)
.+||..+..
T Consensus 331 ~iw~~~~~~ 339 (416)
T 2pm9_A 331 EVQTLQNLT 339 (416)
T ss_dssp EEEESCCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 111
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.66 E-value=1.3e-13 Score=145.76 Aligned_cols=280 Identities=10% Similarity=0.075 Sum_probs=184.1
Q ss_pred CCeEEEEecCCCcEEEEECCCC-------cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003327 485 SDIYLFVGSHSHKFICADAKRS-------SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-------~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
++..|+.|+.|+.|..||..++ +..-.+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 4567899999999999998754 333344445555567778888889999999999999999999998888766
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec---cCCcccccceeecC----------CCEEEEEecCCeE
Q 003327 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP---CGGSIFGSPAIDEV----------HDVLYVASTSGRL 624 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~----------~~~l~v~t~~g~l 624 (829)
........+.+++..+++++.|+.++.||.... ...... .+........+.++ ...++.++.+|.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 655556677777889999999999999998743 333222 11122222222222 2578889999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CCEEEEeecCCceeecCcccccCCCeEE
Q 003327 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
..||.. +.....+........+..+.+++..++.++.++.|.+|| .+ +.....+..+..+.... ...++.++
T Consensus 197 ~iwd~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~---~sp~~~~l 270 (343)
T 2xzm_R 197 KVWNTN---FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA---FNPKLQWV 270 (343)
T ss_dssp EEEETT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEE---ECSSSCEE
T ss_pred EEEcCC---CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEE---ECCCCCEE
Confidence 999954 555555554444456677888889999999999999999 44 33333333333333222 23345666
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCcccccc--ccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASA--YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++.++.+..||..+++............... .......+...+..+++..+++|+.||.|.+|+..++
T Consensus 271 a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 271 AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 66778889999998876543111110000000 0000000001112345788999999999999998754
No 112
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.66 E-value=1.2e-13 Score=158.40 Aligned_cols=316 Identities=11% Similarity=0.064 Sum_probs=216.6
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeC----CEEEEEEcCCCcEEEEEe
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYK----GKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~d~~tG~~~w~~~ 555 (829)
++.++.+|..|+.|+.|..||..+++ ....+..+.....+..+++++..+++++.+ +.++.|| +|+....+.
T Consensus 67 ~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~ 144 (611)
T 1nr0_A 67 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT 144 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC
T ss_pred ECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceec
Confidence 44567899999999999999987654 344555555555678899998888887754 3688887 455544444
Q ss_pred cCCeeeeeeeeecCCC-EEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003327 556 TCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
.+........+.+++. .+.+++.|+.+..||..+++++..+..+.....+..+.+++..++.++.|+.+..||..+ |
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~--g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD--G 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC--C
Confidence 4444445556666554 588999999999999999988887766666666677777788899999999999999887 7
Q ss_pred eEEEeec-------cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee
Q 003327 635 HTLWLHE-------LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 635 ~~~w~~~-------~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~ 706 (829)
+.+..+. .+.....+..+.+++..++.++.|+.|..|| .+++.+..+..+...........-.+..+..++.
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 6665542 2233345667778888999999999999999 8888776665432211100000113457888899
Q ss_pred CCeEEEEeCCCCcEEEEEecCC-ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccce
Q 003327 707 NGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQ 785 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 785 (829)
+|.+..||..+++..-.+..+. .+....+ .+++..+++++.||.|.+||..++......
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~------------spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-------- 362 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSS------------SADGKTLFSADAEGHINSWDISTGISNRVF-------- 362 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEE------------CTTSSEEEEEETTSCEEEEETTTCCEEECS--------
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEE------------eCCCCEEEEEeCCCcEEEEECCCCceeeec--------
Confidence 9999999999887654443222 2222221 223889999999999999998865211100
Q ss_pred eeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccc
Q 003327 786 EFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 786 ~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.......+.+... .++.++.++.|+.+..|+..++.
T Consensus 363 ----~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 363 ----PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ----SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred ----ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 0001111111111 35788889999999999987654
No 113
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.66 E-value=1.7e-14 Score=155.12 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=189.3
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-------EEEEec
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI-------YWTFQT 556 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-------~w~~~~ 556 (829)
.++..|+.|+.|+.|..||..+++....+..+.....+..+++++..+++|+.|+.+..||..++.. ...+..
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC
Confidence 3567899999999999999999999888887766666788899999999999999999999765421 111112
Q ss_pred CCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeecc-----CCcccccceee-cCCCEEEEEecCCeEEEEEc
Q 003327 557 CGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPC-----GGSIFGSPAID-EVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 557 ~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~-~~~~~l~v~t~~g~l~~~~~ 629 (829)
+........+.+ .+..+++|+.|+.+..||..+|+.+..+.. +.....+..+. .++..++.++.||.+..||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 222222223333 345699999999999999999998876532 11222222332 24578889999999999998
Q ss_pred cCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCcee--e---cCccccc-CCCeEE
Q 003327 630 KALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIF--A---GPCTSFA-LPSQVL 702 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~--~---~~~~~~~-~~~~i~ 702 (829)
... +..+..+........+..+.+++..++.++.|+.+..|| .+|+.+..+....... . ...+... .+..++
T Consensus 236 ~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 236 RIT-SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TTT-CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred CCC-CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 741 344444444444446677778889999999999999999 8888775554321100 0 0111122 345788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEec----C-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 703 ICSRNGSIYSFEQESGNLLWEYSV----G-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.|+.+|.|+.||..+++....+.. + ..+.... ..+++..+++|+.||.|.+|+...+
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~------------~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG------------LSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE------------ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE------------ECCCCCEEEEeeCCCCEEEEecCCC
Confidence 889999999999999988766521 1 1122111 1234789999999999999998643
No 114
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.66 E-value=1.4e-13 Score=164.10 Aligned_cols=243 Identities=10% Similarity=0.053 Sum_probs=186.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|.+|+.+|.|..||..+|+....+..+.....+..+++++..+++++.|+.|+.||..+|+.+..+..+.....
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE
Confidence 34577899999999999999999999988887766667888999999999999999999999999999988876666566
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++..+++++.||.+..||..++ .....+..+........+.+ ++..+++++.+|.|..||..+ +......
T Consensus 102 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~--~~~~~~~ 179 (814)
T 3mkq_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC--SSCSEEE
T ss_pred EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcceeEE
Confidence 6677777888999999999999999887 55555554444455556665 456888999999999999887 5555554
Q ss_pred ccCC-cceeeeeeee--cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 641 ELEV-PAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~-~~~~s~~~~~--~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
.... .......+.+ ++..+++++.+|.|..|| .+++.+..+.... .+....+ ...+..+++++.||.|+.||.
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEET
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence 4332 2334455555 778999999999999999 8888877765432 2322211 112346888889999999999
Q ss_pred CCCcEEEEEecCCc
Q 003327 716 ESGNLLWEYSVGDP 729 (829)
Q Consensus 716 ~tG~~~w~~~~~~~ 729 (829)
.+++..+.+..+..
T Consensus 258 ~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 258 STYKVEKTLNVGLE 271 (814)
T ss_dssp TTCSEEEEECCSSS
T ss_pred CCCcEEEEeecCCC
Confidence 99999888765543
No 115
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.65 E-value=3.2e-13 Score=154.12 Aligned_cols=307 Identities=9% Similarity=0.055 Sum_probs=211.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..|+.++.++.+..||. +++.+..+..+.....+..+.+++..+++++.|+.++.|| .+++.+..+..+.....
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~-~~~~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe-CCCcEEEEEecCCCCeE
Confidence 345667888999999999996 5777666665555555677888888999999999999999 56777766655444444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++++.|+.+..||..+... ..+..+........+.+++..+++++.+|.+..||.. ++.+.....
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---~~~~~~~~~ 383 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTG 383 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---CCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---CCEEEEecC
Confidence 456677778899999999999999765544 4444444444456667777899999999999999965 566666655
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003327 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
......+..+.+++..++.++.++.|..||.+++.+....... .+....+. ..+..+..++.|+.|..||. +++.+
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~d~~v~~w~~-~~~~~ 460 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--PDDQTIASASDDKTVKLWNR-NGQLL 460 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET-TSCEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC--CCCCEEEEEcCCCEEEEEEC-CCCEE
Confidence 5544566777788889999999999999997777776654332 23222111 12456778889999999995 56666
Q ss_pred EEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003327 722 WEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 722 w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (829)
..+..... +....+ .+++.++++++.|+.|.+||.. + +....+......+.+.
T Consensus 461 ~~~~~~~~~v~~~~~------------spd~~~las~~~d~~i~iw~~~-~-------------~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAF------------SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVRGV 514 (577)
T ss_dssp EEEECCSSCEEEEEE------------CTTSCEEEEEETTSEEEEEETT-S-------------CEEEEEECCSSCEEEE
T ss_pred EEEcCCCCCEEEEEE------------cCCCCEEEEEeCCCEEEEEcCC-C-------------CEEEEEeCCCCCEEEE
Confidence 55543332 222111 2237889999999999999954 2 2222222222222222
Q ss_pred eE--ECCEEEEeeeCCeEEEEeccccc
Q 003327 801 VM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 801 ~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.+ .+..|..++.||.|+.||. +++
T Consensus 515 ~~s~dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 515 AFSPDGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred EEcCCCCEEEEEECcCEEEEEeC-CCC
Confidence 22 3557888999999999996 444
No 116
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.65 E-value=3e-13 Score=146.04 Aligned_cols=279 Identities=11% Similarity=0.061 Sum_probs=184.6
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe------------------eeeeeeeecCCCEEEEe
Q 003327 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------------------VKCQPVVDAPRQLIWCG 576 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------------------~~~~~~~~~~~~~i~~g 576 (829)
+.....+..+++++..+++|+ ++.+..|+..+|+.+..+..+.. ......+.+++..+++|
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 333445677888988888877 67899999999998876543211 13345567778899999
Q ss_pred ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-c
Q 003327 577 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-A 655 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~ 655 (829)
+.|+.|+.||..+++.+..+..+.....+..+.+++..++.++.++.+..||+.+ ++.......... .....+.+ +
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~~~~-v~~~~~~~~~ 218 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSLTLSIEDG-VTTVAVSPGD 218 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSC-EEEEEECSTT
T ss_pred cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeEEEEEcCCC-cEEEEEECCC
Confidence 9999999999999998887776665566667777778999999999999999988 777666554333 34455555 6
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEEeecC--------CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE----
Q 003327 656 NRHVICCLVDGHVVALD-SSGSIIWRCRTG--------GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW---- 722 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--------~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w---- 722 (829)
+..++.++.++.|..|| .+++.+...... ..+.+..+ ...+..++.++.||.|..||..++....
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF--TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 77889999999999999 888877655321 12222211 1124568888999999999987654321
Q ss_pred --------EEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC
Q 003327 723 --------EYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ 793 (829)
Q Consensus 723 --------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (829)
.+..+.. +.... ...++.++++++.||.|++||..++. ....+..+
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~------------~~~~~~~l~sgs~D~~v~iwd~~~~~-------------~~~~l~~h 351 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVA------------TTQNDEYILSGSKDRGVLFWDKKSGN-------------PLLMLQGH 351 (393)
T ss_dssp ----CEEEEEECCSSCEEEEE------------ECGGGCEEEEEETTSEEEEEETTTCC-------------EEEEEECC
T ss_pred CCCCcceEEEecccCcEEEEE------------ECCCCCEEEEEeCCCeEEEEECCCCe-------------EEEEECCC
Confidence 1111111 11111 12237789999999999999987652 12222211
Q ss_pred CcccccceE--------ECCEEEEeeeCCeEEEEecccc
Q 003327 794 GDIFSSPVM--------IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 794 ~~~~~~~~~--------~~~~l~vg~~~g~l~~~d~~tg 824 (829)
...+.+..+ .+..+..|+.||.|..|+..+.
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 111111111 2346778889999999998643
No 117
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.65 E-value=8.9e-14 Score=146.82 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=191.2
Q ss_pred CCCcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcE-----EEEEecCCeeeeeeeeecCCCEEEEec
Q 003327 504 KRSSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDI-----YWTFQTCGEVKCQPVVDAPRQLIWCGS 577 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~~~~~i~~gs 577 (829)
++.+++-+++.+...+.+..++++ +..|+.|+.|+.|..||..+++. ...+..+........+.+++..+++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 333444455566666667778766 46889999999999999877543 333444444455566777788999999
Q ss_pred cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE-eeccCCcceeeeeeee--
Q 003327 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW-LHELEVPAFASLCITS-- 654 (829)
Q Consensus 578 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w-~~~~~~~~~~s~~~~~-- 654 (829)
.|+.++.|+...+.....................+..++.++.++.+..||... ..... .............+..
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC--CceEEEEeccccCcccceEEccCC
Confidence 999999999999888777665554444455555667889999999999999875 32222 1222222222333332
Q ss_pred cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc
Q 003327 655 ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 655 ~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
....++.++.++.+..+| .+++.+..+.... .+.+..+. ..+..++.++.||.|..||..+++.+..+.....+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 261 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence 234567778899999999 8888776654322 33222111 1245688889999999999999999888776655433
Q ss_pred ccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe
Q 003327 733 SAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 810 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg 810 (829)
..+.. ++.+++++.++.|.+||.+++..-...... ............+.+..+ .+..|+.|
T Consensus 262 ~~~~~-------------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 262 LCFSP-------------NRYWLCAATGPSIKIWDLEGKIIVDELKQE----VISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEECS-------------SSSEEEEEETTEEEEEETTTTEEEEEECCC-----------CCCCCEEEEEECTTSSEEEEE
T ss_pred eecCC-------------CCceeeccCCCEEEEEECCCCeEEEecccc----ceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 22221 456777778999999998754211100000 000000011111222222 34688899
Q ss_pred eeCCeEEEEeccccc
Q 003327 811 CRDDYIYCIALETQH 825 (829)
Q Consensus 811 ~~~g~l~~~d~~tg~ 825 (829)
+.||.|+.||+++|+
T Consensus 325 s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 325 YTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTSCEEEEEEEC--
T ss_pred eCCCEEEEEeCCCcC
Confidence 999999999999986
No 118
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.65 E-value=2.4e-13 Score=155.88 Aligned_cols=312 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~ 562 (829)
++..|..++ ++.++.||..+++..-.+..+.....+..+++++.++.+|+.|+.|..||..+++ .+..+..+.....
T Consensus 29 dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~ 107 (611)
T 1nr0_A 29 AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107 (611)
T ss_dssp TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred CCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE
Confidence 456777776 4589999999888877777666666678899999999999999999999987654 3445554444445
Q ss_pred eeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEE
Q 003327 563 QPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
...+.+++..|.+++.+ +.++.|| +|+....+..+.....+..+.+++. .++.++.|+.+..||..+ ++.+
T Consensus 108 ~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~ 183 (611)
T 1nr0_A 108 DISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK 183 (611)
T ss_dssp EEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE
T ss_pred EEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe
Confidence 56677777778776654 3677777 4554444444444455556666554 588899999999999877 7776
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec--------CCceeecCcccccCCCeEEEEeeCC
Q 003327 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--------GGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--------~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
..+..+.....+..+.+++..++.++.|+.|..|| .+|+.+..+.. ...+.+..+.+ .+..+..++.|+
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~ 261 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADK 261 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTS
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCC
Confidence 66655555566778888889999999999999999 88887765531 12233222111 234688889999
Q ss_pred eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeee
Q 003327 709 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA 788 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 788 (829)
.|..||..+++.+.++..+......... ....+..++.++.+|.+.+||...+. ...
T Consensus 262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~s~s~d~~i~~~~~~~~~-------------~~~ 318 (611)
T 1nr0_A 262 TIKIWNVATLKVEKTIPVGTRIEDQQLG----------IIWTKQALVSISANGFINFVNPELGS-------------IDQ 318 (611)
T ss_dssp EEEEEETTTTEEEEEEECCSSGGGCEEE----------EEECSSCEEEEETTCCEEEEETTTTE-------------EEE
T ss_pred eEEEEeCCCCceeeeecCCCCccceeEE----------EEEcCCEEEEEeCCCcEEEEeCCCCC-------------cce
Confidence 9999999999988776644322111000 01126788899999999999976541 111
Q ss_pred eeccCCcccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003327 789 KLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 789 ~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
...-+...+.+..+ .+..|+.++.||.|..||..+++.
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 11111122222222 456899999999999999988754
No 119
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.65 E-value=6.3e-14 Score=151.65 Aligned_cols=276 Identities=14% Similarity=0.041 Sum_probs=184.2
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCc------EEEEEecCCeeeeeeeeecC----C---CEEEEeccCCeEEEEE
Q 003327 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGD------IYWTFQTCGEVKCQPVVDAP----R---QLIWCGSHDHNLYALD 586 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~------~~w~~~~~~~~~~~~~~~~~----~---~~i~~gs~~g~l~~~d 586 (829)
.+..+.+ +.+++++.|+.|+.||..+++ .+..+..+........+.++ + ..+++++.++.|+.||
T Consensus 20 ~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 20 FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 3445544 689999999999999999988 56666655544444555555 6 6888999999999999
Q ss_pred cCCCeE-----EEeeccC-----Ccccccceee----cCCCE-EEEEecCCeEEEEEccCCC----ceEEE-----ee--
Q 003327 587 FRNYRC-----VYKLPCG-----GSIFGSPAID----EVHDV-LYVASTSGRLTAISVKALP----FHTLW-----LH-- 640 (829)
Q Consensus 587 ~~tg~~-----~w~~~~~-----~~~~~~~~~~----~~~~~-l~v~t~~g~l~~~~~~~~~----g~~~w-----~~-- 640 (829)
..+++. ...+... ........+. +++.. +++++.+|.|+.||..+.. ++.+. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T 1sq9_A 98 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 177 (397)
T ss_dssp EEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred ccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee
Confidence 988875 5555544 2444555666 66788 8999999999999987510 11111 22
Q ss_pred -----ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-------CCceeecCcccccCCCeEEEEeeC
Q 003327 641 -----ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-------GGPIFAGPCTSFALPSQVLICSRN 707 (829)
Q Consensus 641 -----~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-------~~~~~~~~~~~~~~~~~i~~~t~~ 707 (829)
........+..+.+++ .+++++.++.|..|| .+++.+..+.. ...+....+.+ .+..+++++.+
T Consensus 178 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~--~~~~l~~~~~d 254 (397)
T 1sq9_A 178 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAIAHDS 254 (397)
T ss_dssp EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS--STTEEEEEEEE
T ss_pred eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC--CCCEEEEEecC
Confidence 1122223455666667 888899999999999 88888888775 33443322111 24578888888
Q ss_pred ---CeEEEEeCCCCcEEEEEec-------------C-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003327 708 ---GSIYSFEQESGNLLWEYSV-------------G-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 708 ---g~l~~~d~~tG~~~w~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
|.|+.||..+++.+..+.. . ..+.... ...++.++++++.||.|++||..+
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS------------FNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE------------ECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE------------ECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998887764 1 2222111 123478999999999999999876
Q ss_pred Cccccccccccccceeeeeec------cC---------------CcccccceEE-C-----------CEEEEeeeCCeEE
Q 003327 771 DVTGKENQSKDHMVQEFAKLE------LQ---------------GDIFSSPVMI-G-----------GRVFVGCRDDYIY 817 (829)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~~~-~-----------~~l~vg~~~g~l~ 817 (829)
+. ....+. .. ...+...... + ..|+.++.||.|.
T Consensus 323 ~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 323 KE-------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TE-------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred Cc-------------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 52 222222 11 2222233332 3 3788899999999
Q ss_pred EEeccccc
Q 003327 818 CIALETQH 825 (829)
Q Consensus 818 ~~d~~tg~ 825 (829)
.||.++|+
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99999875
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.64 E-value=3.6e-13 Score=150.89 Aligned_cols=320 Identities=12% Similarity=0.052 Sum_probs=210.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc--CCCcEEEEEecCCeeeeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY--LTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~--~tG~~~w~~~~~~~~~~~~~ 565 (829)
.+..++.++.|..||..+++++.++..+... ....+++++.++|+++.++.|..||. .+++++.++..+... ....
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~-~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p-~~va 228 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVE 228 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTTE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEE
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCccc-ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc-ceEE
Confidence 3444556789999999999999888865553 35678899999999999999999999 899998888765544 4456
Q ss_pred eec----CCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCc-----------ccccceeecCCCEEEEE-ecCCeEEEEE
Q 003327 566 VDA----PRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGS-----------IFGSPAIDEVHDVLYVA-STSGRLTAIS 628 (829)
Q Consensus 566 ~~~----~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~-----------~~~~~~~~~~~~~l~v~-t~~g~l~~~~ 628 (829)
+++ +++.+|+++. ++.+..||..+++++..+...+. ......++.++..+++. ..++.|..||
T Consensus 229 ~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 676 7889999875 78999999999999888765321 12234455545665554 4578899999
Q ss_pred ccCCCceEE--EeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCceee--cCcccccCCCeEE
Q 003327 629 VKALPFHTL--WLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPIFA--GPCTSFALPSQVL 702 (829)
Q Consensus 629 ~~~~~g~~~--w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~~~--~~~~~~~~~~~i~ 702 (829)
..+ ++.+ ..... ........+.+++.++++++ .++.|.++| .+|+++..+..+..... ...+....++.+|
T Consensus 309 ~~~--~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 309 YKD--IDNLTVTSIGA-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW 385 (543)
T ss_dssp CTT--SSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEE
T ss_pred ecC--CCcceeEEecc-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEE
Confidence 876 4322 23332 22234556777888888776 478999999 89998877765321111 1011111236788
Q ss_pred EEee--CCeEEEEeCCC-------CcEEEEEecCCccccccccccccccccccccCCCcEEEEEc-------cCCcEEEE
Q 003327 703 ICSR--NGSIYSFEQES-------GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-------SSGSIHIL 766 (829)
Q Consensus 703 ~~t~--~g~l~~~d~~t-------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~G~l~~~ 766 (829)
+.+. ++.|..||.++ ++.+-++..+..-...... .+++..+|+++ .++.|.+|
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~-----------~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT-----------HPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC-----------CTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc-----------CCCCCcEEEecCCCCCcccCceEEEE
Confidence 8764 68999999988 6777666654322111111 23488999987 26789999
Q ss_pred EeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeee-----CCeEEEEeccccccc
Q 003327 767 RVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 767 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~-----~g~l~~~d~~tg~~~ 827 (829)
|.+++........ . ..+.-....+....++.+ ++..+|++.. ++.|..||.+|+++.
T Consensus 455 d~~~~~~~~~~~~---v-~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 455 DLKNLDAKYQVLP---I-AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp ETTCTTSCCEEEC---H-HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ECCCCCCCeEEee---c-hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 9987632211000 0 000000011222223333 4779998854 689999999999864
No 121
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.64 E-value=1.8e-13 Score=159.65 Aligned_cols=279 Identities=11% Similarity=0.075 Sum_probs=196.7
Q ss_pred CCeEEEEecCCCcEEEEECCCC-----cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003327 485 SDIYLFVGSHSHKFICADAKRS-----SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-----~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
....|..|+.|+.|..||..++ .....+..+.....+..+++++..+++|+.|+.|..||..+|+....+..+..
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~ 473 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK 473 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC
Confidence 3467889999999999998764 33344555665566788888999999999999999999999999888876665
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCC--CEEEEEecCCeEEEEEccCCC
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVH--DVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~--~~l~v~t~~g~l~~~~~~~~~ 633 (829)
...+..+.+++..+++++.|+.|+.||.... ....... +........+.+++ ..++.++.++.|..||+.+
T Consensus 474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-- 550 (694)
T 3dm0_A 474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-- 550 (694)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--
Confidence 5556667777888999999999999997654 3333321 12223334444432 4788899999999999987
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003327 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
++....+..+.....+..+.+++..++.++.++.|.+|| .+++.+........+.... ...++.+++++.+++|..
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~sp~~~~l~~~~~~~i~i 627 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC---FSPNRYWLCAATEHGIKI 627 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE---ECSSSSEEEEEETTEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE---EcCCCcEEEEEcCCCEEE
Confidence 776666655555556777888889999999999999999 8998887766554443322 334567777777888999
Q ss_pred EeCCCCcEEEEEecCCcccc------cccc-ccc-cccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 713 FEQESGNLLWEYSVGDPITA------SAYI-DEH-LQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~------~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
||..+++.+..+........ .+.. ... ..........++.++++|+.||.|++||..
T Consensus 628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999988766543221100 0000 000 000011123458899999999999999864
No 122
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.64 E-value=4.5e-14 Score=150.16 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=176.5
Q ss_pred eeCCCeEEEEecC------CCcEEEEECCCCcEEEE----EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003327 482 LKDSDIYLFVGSH------SHKFICADAKRSSVLWE----IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 482 ~~d~~~~l~igs~------~g~l~~~d~~tg~~~w~----~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
++.++..|..|+. |+.++.|+..++..... ...+.....+..+++++ .+++++.|+.|..||..+++..
T Consensus 50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC--------
T ss_pred ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeecccccee
Confidence 3445677777776 67788998877764332 11122224466777764 6778888999999999988754
Q ss_pred EE----EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCC-CEEEEEecCCeEEE
Q 003327 552 WT----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTA 626 (829)
Q Consensus 552 w~----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~ 626 (829)
.. ...+........+.+++..|++|+.|+.|+.||..+++++..+..+........+..++ ..++.++.+|.|..
T Consensus 129 ~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 32 11233334445667778889999999999999999999999887765555555555444 46778888999999
Q ss_pred EEccCCCceEEEeeccC--Ccceeeeeeeec-CCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeE
Q 003327 627 ISVKALPFHTLWLHELE--VPAFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQV 701 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i 701 (829)
||+.+ ++........ .....+..+.++ +..+.+|+.++.|..|| .+++.+..+.... .+....+ ..+....|
T Consensus 209 wd~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~l 285 (357)
T 4g56_B 209 WDTRK--PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY-SYHSSPFL 285 (357)
T ss_dssp CCTTS--SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE-CSSSSCCE
T ss_pred EECCC--CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE-cCCCCCEE
Confidence 99887 6554433322 222344555555 45677888999999999 8888776665432 2322211 11122357
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003327 702 LICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..++.||.|+.||.++++++..+.....+....+.. .++.+++.++.||.|++|+..+
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP-----------~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSP-----------LDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECS-----------SSTTEEEEEETTSCEEEEECC-
T ss_pred EEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeC-----------CCCCEEEEEcCCCeEEEEECCC
Confidence 778899999999999999887655444444332221 1267889999999999999864
No 123
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.63 E-value=1.8e-13 Score=163.18 Aligned_cols=247 Identities=10% Similarity=0.017 Sum_probs=184.6
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003327 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+.....+..+++++..+++++.+|.|..||..+|+.+..+..+........+.+++..|++++.+|.|+.||..+|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34444445577888999999999999999999999999998888766666667788888899999999999999999999
Q ss_pred EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEE
Q 003327 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVV 669 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~ 669 (829)
.+..+..+......+.+.+++..+++++.+|.+..||..+ + ..............+..+.+ ++..+++++.+|.|.
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG--TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC--CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9988877666666777777778999999999999999986 4 33333433334445566666 566888899999999
Q ss_pred EEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003327 670 ALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+|| .+++..+...... .+......+...+..+++++.+|.|..||..+++....+..+.........
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~---------- 236 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF---------- 236 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE----------
Confidence 999 7777666655432 222211111113457888999999999999999988777644332222211
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003327 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+++..+++++.+|.|++||..++
T Consensus 237 -~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 237 -HPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp -CSSSSEEEEEETTSCEEEEETTTC
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCC
Confidence 123778999999999999998765
No 124
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.63 E-value=7.7e-14 Score=149.38 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=169.9
Q ss_pred CCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--CCe
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGE 559 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~ 559 (829)
.++..+++|+.++.|+.||..+++ ....+..+.....+..+.+++..+++++.|+.|+.||..+++....... +..
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 97 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC
Confidence 356788899899999999999987 6666766665556778888889999999999999999999986655432 333
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE---ee-ccCCcccccceeecCCCEEEEEecCCeEEEEEcc-----
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY---KL-PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK----- 630 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w---~~-~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~----- 630 (829)
......+.+++..+++++.++.++.||..+++..+ .. ..+........+.+++..+++++.+|.+..||..
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 177 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccc
Confidence 34445566677899999999999999998876322 22 2223344556666667889999999999999954
Q ss_pred -----------CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccC
Q 003327 631 -----------ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFAL 697 (829)
Q Consensus 631 -----------~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~ 697 (829)
...++.+..+........+..+.+++..+++++.++.|.+|| .+++.+..+.... ++.... ...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~---~~~ 254 (372)
T 1k8k_C 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT---FIT 254 (372)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE---EEE
T ss_pred ccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE---Eec
Confidence 112566666554444456667777888999999999999999 8898887776543 232221 223
Q ss_pred CCeEEEEeeCCeEEEEeCCC
Q 003327 698 PSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~t 717 (829)
++.+++++.+|.|+.|+..+
T Consensus 255 ~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 255 ESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEETTSSCEEEEEET
T ss_pred CCCEEEEEeCCeEEEEEccC
Confidence 56666666899999999887
No 125
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.61 E-value=1.2e-13 Score=145.56 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=163.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEE----cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIK----LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~----~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.+++|+.||.|..||..+++...... .+...+.+..+++++..|++|+.|+.|..||..+|+.+..+..+....
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 4678899999999999999997654332 344455677888999999999999999999999999998887665544
Q ss_pred eeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEE
Q 003327 562 CQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+..++ ..+++++.|+.|+.||..+++....+... +....+..+.++ ...+..++.+|.|..||..+ ++.+
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--~~~~ 250 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--TSCV 250 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CC
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--CcEE
Confidence 445555444 56788999999999999999887766433 222334444443 34667788999999999987 8877
Q ss_pred EeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 638 WLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..+........+..+.+++. .++.++.|+.|.+|| .++++.........+.+..+.+ +....+..++.||.|..|+.
T Consensus 251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp-~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 251 LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSP-LNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECS-SSTTEEEEEETTSCEEEEEC
T ss_pred EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeC-CCCeEEEEEcCCCeEEEEEC
Confidence 77766555556677777664 577889999999999 7776643222223333322111 11223556788999999998
Q ss_pred CCCcE
Q 003327 716 ESGNL 720 (829)
Q Consensus 716 ~tG~~ 720 (829)
.+..+
T Consensus 330 ~~~~~ 334 (344)
T 4gqb_B 330 PTEPL 334 (344)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 76543
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.61 E-value=3.3e-13 Score=145.68 Aligned_cols=264 Identities=12% Similarity=0.137 Sum_probs=183.9
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEE-EeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003327 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIW-CGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~-~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
.+++++.|+.|+.||..+|+.++.+..+..+ ....+.+++..++ +++.++.|+.||..+|+.++.+..+. ....+.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCc-ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 3455667899999999999999988776654 4456666677775 56688999999999999999887665 3345567
Q ss_pred ecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEEc-CCCCEEEEeecCC
Q 003327 609 DEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
++++..++++. .++.|+.||+.+ ++.+........ .....+.+++..++ .++.++.|+++| .+++.+..+..+.
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS--NTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCEEEEEECCCCEEEEEECCC--CeEEEEEeCCCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence 77678887665 468999999998 887776665443 35666777777775 555689999999 8898888777655
Q ss_pred ceeecCcccccC-CCeEEE-EeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc---cC
Q 003327 686 PIFAGPCTSFAL-PSQVLI-CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT---SS 760 (829)
Q Consensus 686 ~~~~~~~~~~~~-~~~i~~-~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 760 (829)
.+.... ... +..+|+ ++.++.|+.||..+++..........+....+ ..++..+++++ .+
T Consensus 159 ~~~~~~---~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 159 SPKGIA---VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV------------NPEGTKAYVTNVDKYF 223 (391)
T ss_dssp SEEEEE---ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE------------CTTSSEEEEEEECSSC
T ss_pred CcceEE---ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE------------CCCCCEEEEEecCcCC
Confidence 442221 222 345654 45678999999999998877765443322211 12377888887 68
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe-eeCCeEEEEeccccccc
Q 003327 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG-CRDDYIYCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg-~~~g~l~~~d~~tg~~~ 827 (829)
+.|++||..++ +........... ....+ .+..||+. +.++.++.||..++++.
T Consensus 224 ~~v~~~d~~~~-------------~~~~~~~~~~~~-~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 224 NTVSMIDTGTN-------------KITARIPVGPDP-AGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp CEEEEEETTTT-------------EEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcEEEEECCCC-------------eEEEEEecCCCc-cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 99999998755 223333332222 22222 24578665 56899999999988753
No 127
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.61 E-value=3.5e-13 Score=145.02 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=184.8
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEc--CCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC---ee
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKL--EGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---EV 560 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~---~~ 560 (829)
..++.|+.|+.|..||..+++....+.. +.....+..+++ ++..+++++.|+.|..||..+ +....+.... ..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 165 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYW 165 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCC
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCC
Confidence 6899999999999999999887766653 444445677777 567899999999999999875 4444443322 33
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCC--ceEE
Q 003327 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALP--FHTL 637 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~--g~~~ 637 (829)
.....+.+++..+++++.++.|+.||. +++.+..+..+........+.+++. .++.++.++.|..||+.+.. +..+
T Consensus 166 v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 166 YCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred eEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 444566777889999999999999998 6778888776666666667777666 88999999999999988522 3344
Q ss_pred EeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-------eec---C-----cccccCCCe
Q 003327 638 WLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-------FAG---P-----CTSFALPSQ 700 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-------~~~---~-----~~~~~~~~~ 700 (829)
.... ......+..+.+ ++..+++++.++.|.+|| .+++....+...... ... | ++....++.
T Consensus 245 ~~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 245 AEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp EEEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred EEec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 4343 233345667777 788999999999999999 777654443311100 000 0 011122333
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCC--ccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 701 VLICSRNGSIYSFEQESGNLLWEYSVGD--PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+ .++.||.|+.||..+++.+..+.... ........ ..++..+++++ ||.|.+||.+
T Consensus 324 ~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~-----------s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 324 L-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF-----------SPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp T-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE-----------CTTSSEEEEEE-TTEEEEEECC
T ss_pred c-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE-----------ecCccEEEEec-CCcEEEEecC
Confidence 3 55679999999999999987776422 22221111 22367788886 8999999876
No 128
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.61 E-value=4e-13 Score=146.51 Aligned_cols=267 Identities=10% Similarity=0.008 Sum_probs=187.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.|.+|. |+.|+.||..||+....+.++ ...+.+..+++++..+++|+.|+.|..||.++++.+..+..+......
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 45666665 788999999999988777654 334567889999999999999999999999999999888766544433
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE----E
Q 003327 564 PVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL----W 638 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~----w 638 (829)
... ++..+.+|+.++.++.||..+. ..+..+..+...........++..++.++.+|.+..|+..+ ++.. .
T Consensus 195 ~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~--~~~~~~~~~ 270 (420)
T 4gga_A 195 LSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--GEGGWVPLQ 270 (420)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--CSSCSCCSE
T ss_pred Eee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc--ccccceeee
Confidence 333 4578899999999999998764 34444444444445555666678899999999999999876 4321 1
Q ss_pred eeccCCcceeeeeeeecCC-EEEEE--eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe--eCCeEEE
Q 003327 639 LHELEVPAFASLCITSANR-HVICC--LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS--RNGSIYS 712 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~-~l~~~--~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t--~~g~l~~ 712 (829)
...............+.+. .++++ +.|+.|..|| .+|+....+.....+.+.... ..++.+++++ .||.|+.
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~--~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE--TTTTEEEEEECTTTCCEEE
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec--CCCCeEEEEEecCCCEEEE
Confidence 1222222223444444443 44443 4689999999 899988887766655443321 1244666654 6899999
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003327 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
||..+++.+.++..+........+ .+++.+++.++.||.|.+||...
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l~~-----------spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSLTM-----------SPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE-----------CTTSSCEEEEETTTEEEEECCSC
T ss_pred EECCCCcEEEEEcCCCCCEEEEEE-----------cCCCCEEEEEecCCeEEEEECCC
Confidence 999999999887654332222111 22378899999999999998764
No 129
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.60 E-value=1.3e-13 Score=146.62 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=176.5
Q ss_pred CCceeeceEEeeCCcEEEEEEe------CCEEEEEEcCCCcEEEE-----EecCCeeeeeeeeecCCCEEEEeccCCeEE
Q 003327 515 EGRIECSAAVLADFSQVVVGCY------KGKIYFLDYLTGDIYWT-----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLY 583 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~------dg~l~~~d~~tG~~~w~-----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~ 583 (829)
+...+.++.+++||..|+.++. |+.++.|+..+|..... ......+ ....+.+ ++.+++++.+|.|+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~s~-d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV-TDVAWVS-EKGILVASDSGAVE 118 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE-EEEEEET-TTEEEEEETTSCEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE-EEEEEcC-CCCEEEEECCCEEE
Confidence 3444567889999999999886 67899999888765322 1222233 3344554 46777888999999
Q ss_pred EEEcCCCeEEEeec----cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CE
Q 003327 584 ALDFRNYRCVYKLP----CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RH 658 (829)
Q Consensus 584 ~~d~~tg~~~w~~~----~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~ 658 (829)
.||..+++...... .+...+....+.+++..++.++.+|.|..||..+ ++.+..+........+..+..++ ..
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEccCCCce
Confidence 99999887654322 2233445566777778999999999999999998 88888776655555556665555 46
Q ss_pred EEEEeeCCeEEEEc-CCCCEEEEeecCC---ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccc
Q 003327 659 VICCLVDGHVVALD-SSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITAS 733 (829)
Q Consensus 659 l~~~~~~g~i~~~d-~~g~~~w~~~~~~---~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~ 733 (829)
++.++.++.|.+|| .+++......... .+.+.. .....+..+.+|+.++.|+.||..+++.+..+..... +...
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~-~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT-WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEE-ECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchh-hhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 77788899999999 8877654433221 122111 1112234677888999999999999998877664433 2222
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE---ECCEEEEe
Q 003327 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVG 810 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~vg 810 (829)
.+... .+.+++.++.||.|++||.+++ +.+......+. +.+... .+..|..+
T Consensus 276 ~~sp~-----------~~~~lasgs~D~~i~iwd~~~~-------------~~~~~~~H~~~-V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 276 AYSYH-----------SSPFLASISEDCTVAVLDADFS-------------EVFRDLSHRDF-VTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp EECSS-----------SSCCEEEEETTSCEEEECTTSC-------------EEEEECCCSSC-EEEEEECSSSTTEEEEE
T ss_pred EEcCC-----------CCCEEEEEeCCCEEEEEECCCC-------------cEeEECCCCCC-EEEEEEeCCCCCEEEEE
Confidence 21111 1357888999999999998765 22322222222 222222 24577788
Q ss_pred eeCCeEEEEeccc
Q 003327 811 CRDDYIYCIALET 823 (829)
Q Consensus 811 ~~~g~l~~~d~~t 823 (829)
+.||.|+.||+.+
T Consensus 331 s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 331 GWDHKVLHHHLPS 343 (357)
T ss_dssp ETTSCEEEEECC-
T ss_pred cCCCeEEEEECCC
Confidence 9999999999865
No 130
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.60 E-value=1.2e-12 Score=138.30 Aligned_cols=280 Identities=10% Similarity=0.072 Sum_probs=172.6
Q ss_pred CCcEEEEEEeCCEEEEEEcCCC-------cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTG-------DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
++..+++|+.|+.|..||..++ .....+..+........+.+++..+++++.|+.++.||..+++.+..+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 6778999999999999998754 334444444444455566667788999999999999999999998888766
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeec----------CCEEEEEeeCC
Q 003327 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSA----------NRHVICCLVDG 666 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~----------~~~l~~~~~~g 666 (829)
.....+..+.+++..++.++.++.+..||... ....... ..........+.+. ...++.++.++
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS---CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC---CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 66666677777788999999999999999874 2222221 11111223333333 26788899999
Q ss_pred eEEEEcCCCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCC-CCcEEEEEecCCcccccccccccccccc
Q 003327 667 HVVALDSSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLLWEYSVGDPITASAYIDEHLQLKL 744 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 744 (829)
.|.+||.+++....+... ..+....+.+ .+..+..++.||.|..||.. .+.....+.....+....+.
T Consensus 195 ~i~iwd~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~s-------- 264 (343)
T 2xzm_R 195 RLKVWNTNFQIRYTFKAHESNVNHLSISP--NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN-------- 264 (343)
T ss_dssp EEEEEETTTEEEEEEECCSSCEEEEEECT--TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEEC--------
T ss_pred EEEEEcCCCceeEEEcCccccceEEEECC--CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEEC--------
Confidence 999999555555544432 2232221111 23468888999999999984 44444444333333222211
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecCccccccccc-cccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003327 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSK-DHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
+.+..+. ++.++.|.+||..++......... ..... .....-....+.+... .+..|+.|+.||.|..|+.
T Consensus 265 ----p~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 265 ----PKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK-AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp ----SSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG-BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred ----CCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh-hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 1244554 456778999998755321100000 00000 0000000111112222 3568999999999999999
Q ss_pred cccc
Q 003327 822 ETQH 825 (829)
Q Consensus 822 ~tg~ 825 (829)
++|+
T Consensus 339 ~~g~ 342 (343)
T 2xzm_R 339 ETSA 342 (343)
T ss_dssp EEEE
T ss_pred EccC
Confidence 8874
No 131
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.60 E-value=7.2e-13 Score=141.80 Aligned_cols=240 Identities=9% Similarity=-0.072 Sum_probs=167.8
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE
Q 003327 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 592 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~ 592 (829)
+.....+..+++++..+++++.|+.|+.||..+++ .+..+..+........+.+++..+++++.|+.++.||..+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 33334567788888899999999999999999987 6667765555555566777788999999999999999999986
Q ss_pred EEeecc--CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE---Eee-ccCCcceeeeeeeecCCEEEEEeeCC
Q 003327 593 VYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL---WLH-ELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 593 ~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~---w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
...... .........+.+++..+++++.+|.+..||.++ ++.. -.. ........+..+.+++..+++++.++
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC--CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 555432 333445566666678999999999999999887 4321 111 11233345666777888999999999
Q ss_pred eEEEEc-C------------------CCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003327 667 HVVALD-S------------------SGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 667 ~i~~~d-~------------------~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.+..|| . +++.+..+.... .+....+ ...+..+++++.||.|..||..+++.+..+..
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF--SANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE--CSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 999999 4 355555554222 2222211 11234788899999999999999999887765
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003327 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+........... ++.+++++ .+|.|++|+..+
T Consensus 243 ~~~~v~~~~~~~-----------~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ETLPLLAVTFIT-----------ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSCCEEEEEEEE-----------TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEec-----------CCCEEEEE-eCCeEEEEEccC
Confidence 442222222211 25555555 899999999987
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.60 E-value=4.8e-13 Score=140.94 Aligned_cols=261 Identities=10% Similarity=0.029 Sum_probs=176.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCC-----
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCG----- 558 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~----- 558 (829)
..+++++.++.|+.||..+++.++.+..+.. ....+.++++++.+|+.+. ++.|+.||..+|+.++.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4677888899999999999999988876652 1346778888888877654 6799999999999998776543
Q ss_pred eeeeeeeeecCCCEEEEec------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003327 559 EVKCQPVVDAPRQLIWCGS------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
.......+.++++.+|+++ .++.|+.||..+++.++.+..+.. ...+.+++++..+|++ ++.++.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-cceeEECCCCCEEEEe--CCeEEE
Confidence 0122345666677888885 468999999999999888776433 3445577767778887 578999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC------------------------eEEEEc-CCCCEEEEe
Q 003327 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG------------------------HVVALD-SSGSIIWRC 681 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g------------------------~i~~~d-~~g~~~w~~ 681 (829)
||+.+ ++........... ....+.+++..+|+....+ .|+.+| .+++.. ..
T Consensus 159 ~d~~~--~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 159 MDPEA--GTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EETTT--TEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EECCC--CcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 99987 8777665543211 1113344444444433221 467888 777765 32
Q ss_pred ecC---CceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE
Q 003327 682 RTG---GPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 682 ~~~---~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
... ..+.. +....+ ..+|++ ++.|+.||.++++.+..+..+.......+ ..++..+|++
T Consensus 235 ~~~~~~~~~~~---~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~~~ 297 (337)
T 1pby_B 235 EVRIMDVFYFS---TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNV------------STDGSTVWLG 297 (337)
T ss_dssp EEEECSSCEEE---EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEE------------CTTSCEEEEE
T ss_pred ecCCCCCceee---EEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEE------------CCCCCEEEEE
Confidence 211 11111 112223 457766 68999999999999887775543322211 1236789999
Q ss_pred ccCCcEEEEEeecC
Q 003327 758 TSSGSIHILRVNLD 771 (829)
Q Consensus 758 ~~~G~l~~~d~~~~ 771 (829)
+.++.|.+||..++
T Consensus 298 ~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 298 GALGDLAAYDAETL 311 (337)
T ss_dssp SBSSEEEEEETTTC
T ss_pred cCCCcEEEEECcCC
Confidence 89999999998765
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.59 E-value=1.9e-12 Score=137.39 Aligned_cols=246 Identities=11% Similarity=0.147 Sum_probs=173.7
Q ss_pred EEEEEcCCceeeceEEeeCCcEEEEEEe-------CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CC
Q 003327 509 LWEIKLEGRIECSAAVLADFSQVVVGCY-------KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DH 580 (829)
Q Consensus 509 ~w~~~~~~~~~~~~~~~~~~~~v~vg~~-------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g 580 (829)
.+........ ....++++++.+|+++. ++.|+.||..+++.++.+..+... ....+.++++.+|+++. ++
T Consensus 34 ~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 34 MLRKAVGKGA-YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP-FGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEEEEEESSE-EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC-CSEEEETTTTEEEEEETTTT
T ss_pred hhhhhhccCc-cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc-ceEEECCCCCEEEEEecCCC
Confidence 3444444333 35678888889999874 468999999999999988775543 33456667777777644 68
Q ss_pred eEEEEEcCCCeEEEeeccCCcc---------cccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceee
Q 003327 581 NLYALDFRNYRCVYKLPCGGSI---------FGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~---------~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
.|+.||.++|+.++.+..+... .....++++++.+|++.. ++.|+.||.++ ++..+...........
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTG 189 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccce
Confidence 9999999999999988764321 234567777788998873 67899999987 8888877633333355
Q ss_pred eeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecC-ccccc-CCCeEEEEeeC-CeEEEEeCCCCcEEEEE
Q 003327 650 LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGP-CTSFA-LPSQVLICSRN-GSIYSFEQESGNLLWEY 724 (829)
Q Consensus 650 ~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~-~~~~~-~~~~i~~~t~~-g~l~~~d~~tG~~~w~~ 724 (829)
..+.++++.+|+++.++.++++| .+++..+....+.. ....+ .+... .++.+|+++.+ +.|+.||..+++.++..
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 67777889999999999999999 89999888765321 00000 01122 24568887654 89999999999998887
Q ss_pred ecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003327 725 SVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
..+.... ..+. .+++.+|++. .++.|.+||..++
T Consensus 270 ~~~~~~~--~~~s-----------~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 270 AAPESLA--VLFN-----------PARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ECSSCCC--EEEE-----------TTTTEEEEEETTTTEEEEEETTTT
T ss_pred EcCCCce--EEEC-----------CCCCEEEEEECCCCeEEEEECCCC
Confidence 7654321 1111 2266677776 5889999998765
No 134
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.58 E-value=6.9e-13 Score=141.48 Aligned_cols=279 Identities=9% Similarity=0.048 Sum_probs=182.8
Q ss_pred eeceEEee----CCcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecC----CCEEEEeccCCeEEEE
Q 003327 519 ECSAAVLA----DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAP----RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 519 ~~~~~~~~----~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~----~~~i~~gs~~g~l~~~ 585 (829)
..+..+.+ ....+++++.++.|..||..+++.+..+.. +........+.++ +..+++|+.||.|+.|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 34555654 345688888899999999998887765542 1122333445444 4578899999999999
Q ss_pred EcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee---ccCCcceeeeeeeecCCEEEE
Q 003327 586 DFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVPAFASLCITSANRHVIC 661 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~---~~~~~~~~s~~~~~~~~~l~~ 661 (829)
|..+++.+..+..+........+.+ ++..+++++.+|.|..||+.+ ++.+..+ ........+..+.+++..+++
T Consensus 101 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp CTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--TEEEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred EchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--CeEEEEecccccccCceeEEEECCCCCEEEE
Confidence 9999999988876665556666666 678899999999999999987 7777665 333444466677778889999
Q ss_pred EeeCCeEEEEc-CCCCEEEEeec-----------------------------CCceeecCcccccCCCeEEEEeeCCeEE
Q 003327 662 CLVDGHVVALD-SSGSIIWRCRT-----------------------------GGPIFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 662 ~~~~g~i~~~d-~~g~~~w~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
++.+|.|.+|| .+++....+.. ...+.. +... ++.++.++.+|.|.
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~-~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC---VRWL-GDLILSKSCENAIV 254 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE---EEEE-TTEEEEECSSSEEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE---EEEc-CCEEEEEecCCEEE
Confidence 99999999999 76654322110 011111 1122 56788899999999
Q ss_pred EEeCCCCcE--------------EEEEecCCccccccccccccccccccccCC--CcEEEEEccCCcEEEEEeecCcccc
Q 003327 712 SFEQESGNL--------------LWEYSVGDPITASAYIDEHLQLKLESCLSI--DRLVCICTSSGSIHILRVNLDVTGK 775 (829)
Q Consensus 712 ~~d~~tG~~--------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~G~l~~~d~~~~~~~~ 775 (829)
.||..+++. +..+.......... ....+ +.++++++.+|.|++||..++....
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM-----------RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC-----------CCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEE-----------EEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence 999887754 32332222111111 11223 7889999999999999998652110
Q ss_pred ccccccccceeeeeeccC--CcccccceE--ECCEEEEeeeCCeEEEEeccc
Q 003327 776 ENQSKDHMVQEFAKLELQ--GDIFSSPVM--IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~t 823 (829)
......... ...+..... .+..|+.++.||.|+.||+.+
T Consensus 324 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 324 ---------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ---------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ---------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 011112211 122222222 356888899999999999864
No 135
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=99.58 E-value=5.6e-16 Score=162.36 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=116.8
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcCCC
Q 003327 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKGLC 357 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~ 357 (829)
..+.+++|+.|+++|+++|+++.|+.+++||++|||||+|++|+++| .+++..+|++||+++|+.+|.+.....
T Consensus 6 ~~p~~~~e~~l~~~~~~~l~~~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~~~~~ 85 (329)
T 3tej_A 6 RAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEEDST 85 (329)
T ss_dssp CCCCTTHHHHHHHHHHHHHTC-CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSCTTSS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhhcccc
Confidence 45677899999999999999999999999999999999999998765 478899999999999999998654322
Q ss_pred ccccccccccc-cCcccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCC------------------cc
Q 003327 358 NLDVSADANWK-LNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLP------------------WN 418 (829)
Q Consensus 358 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~------------------~~ 418 (829)
... ....... ....+++++++|+..++...|..++++|..+.++|+++.+++.....+ .+
T Consensus 86 ~~~-~~~~~~~l~~g~~~~l~~lhg~~~~~~~~~~l~~~L~~~~~v~~~d~~g~~~~~~~~~~~~~~a~~~~~~i~~~~~ 164 (329)
T 3tej_A 86 RRM-GFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQP 164 (329)
T ss_dssp TTT-TSSSEEEEECCSSCEEEEECCTTSCCGGGGGGGGTSCTTCEEEEECCCTTTSHHHHCSSHHHHHHHHHHHHHHHCS
T ss_pred ccc-ccceeeeccCCCCCcEEEEeCCcccchHHHHHHHhcCCCCeEEEeeCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 111 0111111 134557899999999999999999999998899999888775221100 01
Q ss_pred CCCCCC-eeeecccccee
Q 003327 419 LSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 419 ~~~~~~-~~s~~~~~~~~ 435 (829)
..||.| |||+||.++++
T Consensus 165 ~~~~~l~G~S~Gg~ia~~ 182 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQG 182 (329)
T ss_dssp SSCEEEEEETHHHHHHHH
T ss_pred CCCEEEEEEccCHHHHHH
Confidence 228888 99999998877
No 136
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.58 E-value=2.2e-12 Score=134.66 Aligned_cols=265 Identities=10% Similarity=0.040 Sum_probs=178.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.|.+|. |+.|+.||..||+.+..+..+ .....+..+.+++..+++|+.|+.|..||.++|+.+..+..+......
T Consensus 36 ~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 36 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence 34565654 788999999999988777654 334567788889999999999999999999999999888766544333
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe---
Q 003327 564 PVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL--- 639 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~--- 639 (829)
.. ..+..+.+++.++.+..++..++. .+.....+...........++..++.++.+|.+..||..+ ++....
T Consensus 115 ~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~ 190 (318)
T 4ggc_A 115 LS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--GEGGWVPLQ 190 (318)
T ss_dssp EE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--BTTBSCCSE
T ss_pred ee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC--Cccccccee
Confidence 22 235788899999999999887654 3333333444444455556678899999999999999887 432211
Q ss_pred -eccCCcceeeeeeeecC-CEEEE--EeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe--eCCeEEE
Q 003327 640 -HELEVPAFASLCITSAN-RHVIC--CLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS--RNGSIYS 712 (829)
Q Consensus 640 -~~~~~~~~~s~~~~~~~-~~l~~--~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t--~~g~l~~ 712 (829)
..............+.+ ..+.+ ++.++.+..+| ..+...........+....+. ..++.+++++ .|+.|+.
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHYKELISGHGFAQNQLVI 268 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEE--TTTTEEEEEECTTTCCEEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeec--ccccceEEEEEcCCCEEEE
Confidence 11111112233333333 33333 34567899999 777766555544444333221 1244566554 6899999
Q ss_pred EeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 713 FEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
||..+++.+.++..+.. +....+. +++.+++.++.||.|.+||..
T Consensus 269 wd~~~~~~~~~l~gH~~~V~~l~~s------------pdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 269 WKYPTMAKVAELKGHTSRVLSLTMS------------PDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEC------------TTSSCEEEEETTTEEEEECCS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEc------------CCCCEEEEEecCCeEEEEECC
Confidence 99999999988775433 3222222 237889999999999999875
No 137
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.58 E-value=3.1e-12 Score=139.47 Aligned_cols=266 Identities=15% Similarity=0.110 Sum_probs=179.3
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC--CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+.|.+|. |+.|+.||..+|++...+..+ .....+..+.+++..+++|+.||.|..||..+++.+..+..+.......
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~ 195 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 195 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE
Confidence 4666665 999999999999988776643 3445566777788899999999999999999999998887665544444
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE----Ee
Q 003327 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW----RC 681 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w----~~ 681 (829)
..+ +..+..++.++.+..+|.... ...+................+++..++.++.++.+.+++ .+++..+ ..
T Consensus 196 s~~--~~~l~sgs~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~ 272 (420)
T 4gga_A 196 SWN--SYILSSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 272 (420)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred eeC--CCEEEEEeCCCceeEeeeccc-ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence 443 488999999999999997752 233333443334444556666788999999999999999 6665321 11
Q ss_pred e-cCCceeecCcccccCCCeEEEE--eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003327 682 R-TGGPIFAGPCTSFALPSQVLIC--SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 682 ~-~~~~~~~~~~~~~~~~~~i~~~--t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
. ....+......+ .....+.++ +.|+.|..||..+|+....+.....+....+... ++.+++++
T Consensus 273 ~~~~~~V~~~~~~p-~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~------------~~~lv~~s 339 (420)
T 4gga_A 273 TQHQGAVKAVAWCP-WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH------------YKELISGH 339 (420)
T ss_dssp CCCSSCEEEEEECT-TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETT------------TTEEEEEE
T ss_pred cccCCceeeeeeCC-CcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCC------------CCeEEEEE
Confidence 1 122222221111 123344443 4689999999999999988877666554433322 55666554
Q ss_pred --cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003327 759 --SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 759 --~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+|.|++||..++ +....+.-+...+.+..+ ++..|+.|+.|+.|..||..+.
T Consensus 340 g~~d~~I~iwd~~~~-------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 340 GFAQNQLVIWKYPTM-------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CTTTCCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ecCCCEEEEEECCCC-------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7899999998765 223333222222222222 3567888999999999998653
No 138
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.57 E-value=2e-13 Score=145.22 Aligned_cols=266 Identities=11% Similarity=0.117 Sum_probs=174.4
Q ss_pred eEEEEecC---CCcEEEEECCCCcEEEEEEc-CCceeeceEEeeC---CcEEEEEEeCCEEEEEEcCCCc-EEEEEecCC
Q 003327 487 IYLFVGSH---SHKFICADAKRSSVLWEIKL-EGRIECSAAVLAD---FSQVVVGCYKGKIYFLDYLTGD-IYWTFQTCG 558 (829)
Q Consensus 487 ~~l~igs~---~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~---~~~v~vg~~dg~l~~~d~~tG~-~~w~~~~~~ 558 (829)
..+.+|+. ++.|..||..+++....... +.....+..+.++ +..+++++.|+.|..||..+++ .+..+..+.
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 111 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK 111 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc
Confidence 45566766 89999999999987544332 2223345667666 5789999999999999999988 666665544
Q ss_pred eeeeee------eeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCc----ccccce----eecCCCEEEEEecCCe
Q 003327 559 EVKCQP------VVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGS----IFGSPA----IDEVHDVLYVASTSGR 623 (829)
Q Consensus 559 ~~~~~~------~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~----~~~~~~----~~~~~~~l~v~t~~g~ 623 (829)
...... .+.+++..+++++.|+.++.||..+++ .+..+..... ...+.. +..++..+++++.+|.
T Consensus 112 ~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 112 EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191 (357)
T ss_dssp SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSE
T ss_pred cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCe
Confidence 333332 234567789999999999999999886 5555433211 111222 4456788999999999
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeee---cCCEEEEEeeCCeEEEEc-CCCCEEEEee-----c-CCceeecCcc
Q 003327 624 LTAISVKALPFHTLWLHELEVPAFASLCITS---ANRHVICCLVDGHVVALD-SSGSIIWRCR-----T-GGPIFAGPCT 693 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~---~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-----~-~~~~~~~~~~ 693 (829)
|..||..+ ++..+....... ..+..+.+ +++.+++++.+|.|..|| .+++....+. . ...+....
T Consensus 192 i~i~d~~~--~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~-- 266 (357)
T 3i2n_A 192 IKLFDLRN--MALRWETNIKNG-VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR-- 266 (357)
T ss_dssp EEEEETTT--TEEEEEEECSSC-EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE--
T ss_pred EEEEECcc--CceeeecCCCCc-eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE--
Confidence 99999998 777665544333 35666666 788999999999999999 6654433322 1 22232221
Q ss_pred cccCCC--eEEEEeeCCeEEEEeCCCCcE-------------------EEEEecCCc-cccccccccccccccccccCCC
Q 003327 694 SFALPS--QVLICSRNGSIYSFEQESGNL-------------------LWEYSVGDP-ITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 694 ~~~~~~--~i~~~t~~g~l~~~d~~tG~~-------------------~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
...++ .++.++.||.|..||..++.. +..+..... +.... ...++
T Consensus 267 -~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~------------~s~~~ 333 (357)
T 3i2n_A 267 -HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD------------WSPDK 333 (357)
T ss_dssp -EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE------------ECSSS
T ss_pred -ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE------------EcCCC
Confidence 22233 477888999999999876532 222322221 21111 12236
Q ss_pred cEEE-EEccCCcEEEEEeec
Q 003327 752 RLVC-ICTSSGSIHILRVNL 770 (829)
Q Consensus 752 ~~l~-~~~~~G~l~~~d~~~ 770 (829)
..++ .++.||.|++||..+
T Consensus 334 ~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 334 RGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TTEEEEEETTSEEEEEEECC
T ss_pred CeEEEEecCCCcEEEEECCC
Confidence 6676 689999999999874
No 139
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.57 E-value=2.1e-12 Score=138.98 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=181.0
Q ss_pred eeceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEec--CCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEE
Q 003327 519 ECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 519 ~~~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
..+..+.+++ ..+++|+.|+.|..||..+++....+.. +........+.+ ++..+++++.|+.+..||..+.. +.
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~ 154 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQ 154 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eE
Confidence 3456667776 7899999999999999999988876653 334444455665 45788899999999999998644 33
Q ss_pred eeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEE
Q 003327 595 KLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVA 670 (829)
Q Consensus 595 ~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~ 670 (829)
.+.... .......+.+++..+++++.+|.|..||+. ++.+..+........+..+.+++. .++.++.++.|.+
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence 333221 334556677778899999999999999984 677777765555556777777777 8899999999999
Q ss_pred Ec-CC----CCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc---cc---ccccc
Q 003327 671 LD-SS----GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA---SA---YIDEH 739 (829)
Q Consensus 671 ~d-~~----g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~---~~---~~~~~ 739 (829)
|| .+ +..+........+.+..+.+ ..+..+++++.||.|..||..+++....+........ .+ .....
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEMPHEKPVNAAYFNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp EEGGGCCSTTCEEEEEECSSCEEEEEECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred EeCCCCCcccceEEEecCCCceEEEEEcC-CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 99 65 56665554444443332211 1245788889999999999999877655442211100 00 00000
Q ss_pred cccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceE--ECCEEEEeeeCCe
Q 003327 740 LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~vg~~~g~ 815 (829)
..+.......++.+ +++.||.|++||..++ +....+... ...+..... .+..|..++ ||.
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-------------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-------------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTC-------------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCC-------------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 00000001111222 6678999999998765 222222221 122222122 244566665 999
Q ss_pred EEEEeccc
Q 003327 816 IYCIALET 823 (829)
Q Consensus 816 l~~~d~~t 823 (829)
|..||.++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999864
No 140
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.57 E-value=4e-13 Score=145.74 Aligned_cols=290 Identities=10% Similarity=0.040 Sum_probs=183.7
Q ss_pred EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEe-------------cCCeeeeeeeeec-CCCEEEEec
Q 003327 513 KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-------------TCGEVKCQPVVDA-PRQLIWCGS 577 (829)
Q Consensus 513 ~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-------------~~~~~~~~~~~~~-~~~~i~~gs 577 (829)
..+.....+..+++ ++..+++++.||.|..||..+++....+. .+........+.+ +...+++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 33444445667777 78899999999999999999887654433 1223334444555 566888999
Q ss_pred cCCeEEEEEcCCCeEEEeeccCCccccccee--ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec
Q 003327 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA 655 (829)
Q Consensus 578 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~--~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~ 655 (829)
.++.++.||..+++....+............ ..++..+++++.+|.+..||+.+ ++.+..+...........+.++
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--GSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--SCCCEEECCCCSCEEEEEECSS
T ss_pred CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--cceeeeecCCCCcEEEEEECCC
Confidence 9999999999999998887755433222211 12345889999999999999987 7766666655544566677777
Q ss_pred CC-EEEEEeeCCeEEEEc-CCCC-EEEEeec----------------CCceeecCccccc-CCCeEEEEeeCCeEEEEeC
Q 003327 656 NR-HVICCLVDGHVVALD-SSGS-IIWRCRT----------------GGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 656 ~~-~l~~~~~~g~i~~~d-~~g~-~~w~~~~----------------~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~ 715 (829)
+. .+++++.+|.|.+|| .++. .+..... ...+... ... .+..+++++.+|.|..||.
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL---CFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE---EECTTSSEEEEEETTSCEEEEET
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE---EEcCCCCEEEEecCCCeEEEEEC
Confidence 66 478899999999999 6554 3332211 1112111 112 2346888899999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc
Q 003327 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (829)
.+++................. . ..........+++++.+|.|.+||..++ +....+.....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~ 335 (408)
T 4a11_B 275 SNGENTLVNYGKVCNNSKKGL----K--FTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------EQITMLKGHYK 335 (408)
T ss_dssp TTCCBCCCCCCCCCCCCSSCC----C--CEECCSSSSCEEEEEETTEEEEEETTTC-------------CEEEEECCCSS
T ss_pred CCCccceeccccccccccccc----e--eEEecCCCceEEEEecCCEEEEEECcCC-------------cceeeeccCCC
Confidence 998765432211100000000 0 0000122556777778999999998765 22333332222
Q ss_pred ccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003327 796 IFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 796 ~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
.+....+ .+..|+.++.||.|+.||..+++.
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 2333333 246788899999999999998764
No 141
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.56 E-value=6.6e-15 Score=125.53 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHH----HHHHHHHHhcCCC
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL----SSIKSWVSSKLPL 242 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~l~~~l~~~l~~ 242 (829)
.|.|||||++|+||+|.|||++|.+||+|.++++++.++...+..+.++++............ +++++.++..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~-- 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-- 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence 389999999999999999999999999999999999888888888999998887655443333 44455554443
Q ss_pred CCcCCeEEEe--CcccCCCCCCcchhh-hcc
Q 003327 243 AMIPNRFVFM--DSLPMTSSGKVDYAS-LSA 270 (829)
Q Consensus 243 ~~~p~~~~~~--~~lP~t~~GKi~r~~-l~~ 270 (829)
.+|..+.++ .+||+| +||++|-. +++
T Consensus 79 -gv~~~v~~v~~~~lPrt-sGKi~Rv~D~R~ 107 (109)
T 3lax_A 79 -LVTPRVKLVPKGALPKS-EGKAVRVKDLRK 107 (109)
T ss_dssp -SSCCEEEEECTTCSCCC----CCCEEECSC
T ss_pred -CCccceEEEcCCeecCC-CCCcchhhhhcc
Confidence 244455555 479998 79998842 444
No 142
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.56 E-value=1e-12 Score=139.61 Aligned_cols=296 Identities=12% Similarity=0.131 Sum_probs=182.3
Q ss_pred CCceeeceEEeeCCcEEE-EEEe---CCEEEEEEcCCCcEEEEE--ecCCeeeeeeeeecC---CCEEEEeccCCeEEEE
Q 003327 515 EGRIECSAAVLADFSQVV-VGCY---KGKIYFLDYLTGDIYWTF--QTCGEVKCQPVVDAP---RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~-vg~~---dg~l~~~d~~tG~~~w~~--~~~~~~~~~~~~~~~---~~~i~~gs~~g~l~~~ 585 (829)
+.....+..+++++..++ +|+. |+.|+.||..+++..... .....+ ....+.++ +..+++++.++.++.|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI-KCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE-EEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE-EEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 444445677777775554 5555 899999999999875443 333333 33445554 5889999999999999
Q ss_pred EcCCCe-EEEeeccCCcccccc------eeecCCCEEEEEecCCeEEEEEccCCCce-EEEeeccCCc----ceeeee--
Q 003327 586 DFRNYR-CVYKLPCGGSIFGSP------AIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVP----AFASLC-- 651 (829)
Q Consensus 586 d~~tg~-~~w~~~~~~~~~~~~------~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~----~~~s~~-- 651 (829)
|..+++ .+..+..+....... .+..++..++.++.+|.+..||..+ ++ .+..+..... ...+..
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ--KDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS--CSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC--CCCcceeccccCCCCCCceEEEEEE
Confidence 999887 666665544333333 3455567899999999999999987 44 3433332211 222222
Q ss_pred --eeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEe--
Q 003327 652 --ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYS-- 725 (829)
Q Consensus 652 --~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-- 725 (829)
+.+++..+++++.++.|..|| .+++..+.......+....+.+.. .+..+++++.+|.|+.||..+++....+.
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence 446788899999999999999 888887766555555443322211 35678899999999999988876554432
Q ss_pred ---c-CCccccccccccccccccccccCCCc-EEEEEccCCcEEEEEeecCccccccccccc------cceeeeeeccCC
Q 003327 726 ---V-GDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRVNLDVTGKENQSKDH------MVQEFAKLELQG 794 (829)
Q Consensus 726 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 794 (829)
. ...+....+. +.+. ++++++.||.|.+||...+........... ..+.+.......
T Consensus 254 ~~~~~~~~v~~~~~~------------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHL------------PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEECCSSCEEEEEEE------------TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred ccCCCcCCEEEEEEC------------CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 2 2222221111 1244 789999999999999986532211000000 001222222222
Q ss_pred cccccceE--ECCEEE-EeeeCCeEEEEeccccc
Q 003327 795 DIFSSPVM--IGGRVF-VGCRDDYIYCIALETQH 825 (829)
Q Consensus 795 ~~~~~~~~--~~~~l~-vg~~~g~l~~~d~~tg~ 825 (829)
..+.+... .+..|+ .++.||.|+.||..+.+
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 22233222 244566 58889999999998765
No 143
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.5e-12 Score=133.13 Aligned_cols=269 Identities=10% Similarity=0.084 Sum_probs=172.1
Q ss_pred EEEEecCCCcEEEEECCCCc--EEEEEE-c-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-------CcEEEEEec
Q 003327 488 YLFVGSHSHKFICADAKRSS--VLWEIK-L-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------GDIYWTFQT 556 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~--~~w~~~-~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------G~~~w~~~~ 556 (829)
.|..|+.|+.|..||..++. ....+. . +.....+..+++++..+++++.|+.|..||..+ ++.+..+..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 78889999999999998764 333331 1 334455677888889999999999999999753 334444544
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-C---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-Y---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
+........+.+++..|++++.|+.++.||..+ + +++..+..+........+.+++..++.++.|+.+..||..+.
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 444445556777788999999999999999843 2 455555555555556666777788999999999999998762
Q ss_pred CceEEEeeccCCcceeeeeeeec--CCEEEEEeeCCeEEEEc-CCC----CEEEEe----e--cCCceeecCcccccCCC
Q 003327 633 PFHTLWLHELEVPAFASLCITSA--NRHVICCLVDGHVVALD-SSG----SIIWRC----R--TGGPIFAGPCTSFALPS 699 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g----~~~w~~----~--~~~~~~~~~~~~~~~~~ 699 (829)
..+.+..+..+.....+..+.++ +..++.++.|+.|.+|| .++ ...|.. . ....+.... ...++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~---~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA---WGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE---ECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE---EcCCC
Confidence 22444444444434445556555 45788899999999998 433 222322 1 111222221 22456
Q ss_pred eEEEEeeCCeEEEEeCCCCcE--EEEEecCC---ccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 700 QVLICSRNGSIYSFEQESGNL--LWEYSVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~tG~~--~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
.+..++.||.|..||..+++. .-...... .+....+.. ...+..++.++.||.|.+||.+
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~----------~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE----------LNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---------------CCEEEEETTSEEEEEEC-
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec----------CCCceEEEEecCCCcEEEEEec
Confidence 788999999999999887752 21211111 111111111 0125678999999999999875
No 144
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.55 E-value=7.2e-12 Score=132.49 Aligned_cols=273 Identities=11% Similarity=0.087 Sum_probs=180.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecC
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~ 557 (829)
+.++..|..|+.|+.|..||..+++...... .+.....+..+++++..+++|+.|+.+..||..++.. +..+..+
T Consensus 25 sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h 104 (345)
T 3fm0_A 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104 (345)
T ss_dssp CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC
T ss_pred CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC
Confidence 3356788899999999999998886543322 2334455778888999999999999999999887753 4445545
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003327 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
........+.+++..+++++.|+.++.||..+++ .+..+..+........+.+++..++.++.++.+..|+..+ +
T Consensus 105 ~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~--~ 182 (345)
T 3fm0_A 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE--D 182 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET--T
T ss_pred CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC--C
Confidence 4445556677778899999999999999998763 3334444444455566677678899999999999999886 4
Q ss_pred eE--EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CE----------EEE----ee--cCCceeecCccc
Q 003327 635 HT--LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SI----------IWR----CR--TGGPIFAGPCTS 694 (829)
Q Consensus 635 ~~--~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~----------~w~----~~--~~~~~~~~~~~~ 694 (829)
+. ...+........+..+.+++..++.++.|+.|.+|+ ..+ .. .|. .. ....+.....
T Consensus 183 ~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 260 (345)
T 3fm0_A 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-- 260 (345)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE--
T ss_pred CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE--
Confidence 42 233443444456677888889999999999999998 322 10 111 10 0111221111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEe------cCCccccccccccccccccccccCCC-cEEEEEccCCcE
Q 003327 695 FALPSQVLICSRNGSIYSFEQESGNL----LWEYS------VGDPITASAYIDEHLQLKLESCLSID-RLVCICTSSGSI 763 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~G~l 763 (829)
...++.+..++.|+.|..|+..++.. ..... ....+....+ .+.+ +.++.++.||.|
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------------~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW------------NPKEPGLLASCSDDGEV 328 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE------------CSSSTTEEEEEETTSCE
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE------------eCCCceEEEEcCCCCcE
Confidence 11245688889999999998765431 11111 1111221111 1223 589999999999
Q ss_pred EEEEeecC
Q 003327 764 HILRVNLD 771 (829)
Q Consensus 764 ~~~d~~~~ 771 (829)
.+|+..++
T Consensus 329 ~~W~~~~~ 336 (345)
T 3fm0_A 329 AFWKYQRP 336 (345)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99998754
No 145
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-13 Score=149.50 Aligned_cols=235 Identities=9% Similarity=0.000 Sum_probs=165.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCC----CcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCc------EE
Q 003327 483 KDSDIYLFVGSHSHKFICADAKR----SSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGD------IY 551 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~t----g~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~------~~ 551 (829)
..++..|++|+.+|.|..||..+ .+....+..+.....+..+.++ +..+++++.|+.|+.||..+++ ..
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 34567888999999999999987 3455555555544556677776 7789999999999999999887 33
Q ss_pred EEE---ecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCC-CEEEEEec
Q 003327 552 WTF---QTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVH-DVLYVAST 620 (829)
Q Consensus 552 w~~---~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~-~~l~v~t~ 620 (829)
... ..+........+.++ +..+++++.++.|+.||..+++.+..+... ........+.+++ ..+++++.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 322 122222334455555 678889999999999999999998887764 3444555666654 47888888
Q ss_pred CC---eEEEEEccCCCc-eEEEeec-cCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCc
Q 003327 621 SG---RLTAISVKALPF-HTLWLHE-LEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPC 692 (829)
Q Consensus 621 ~g---~l~~~~~~~~~g-~~~w~~~-~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~ 692 (829)
++ .|..||..+ + ..+..+. .......+..+.+ ++..++.++.++.|.+|| .+++.+..+..... +....
T Consensus 236 d~~~~~i~~~d~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~- 312 (416)
T 2pm9_A 236 SDNDPSILIWDLRN--ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK- 312 (416)
T ss_dssp CSSSCCCCEEETTS--TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE-
T ss_pred CCCCceEEEEeCCC--CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE-
Confidence 88 999999987 4 3444443 3333445666666 678899999999999999 88988877664332 22211
Q ss_pred ccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003327 693 TSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 693 ~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
...+....++.++.||.|..||..+++.
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 1111124788888999999999987764
No 146
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-12 Score=143.01 Aligned_cols=268 Identities=17% Similarity=0.190 Sum_probs=173.2
Q ss_pred EECCCCcEEEEE-EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCC---Cc---EEEEEecCCeeeeeeeeecCCCE
Q 003327 501 ADAKRSSVLWEI-KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLT---GD---IYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 501 ~d~~tg~~~w~~-~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~t---G~---~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
|+ .+|+.+..+ ..+.....+..+++ ++..+++|+.|+.|..||..+ +. ....+.....+ ....+.+++..
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~ 125 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV-TQITMIPNFDA 125 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE-EEEEECTTSSE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE-EEEEEeCCCCE
Confidence 44 346666666 44444456778888 888999999999999999877 43 23344433344 44456667788
Q ss_pred EEEeccCCeEEEEEcC---CCeEEEeeccC------------Ccccccc--eeecCCCEEEEEecCCeEEEEEccCCCce
Q 003327 573 IWCGSHDHNLYALDFR---NYRCVYKLPCG------------GSIFGSP--AIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~---tg~~~w~~~~~------------~~~~~~~--~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
+++++.|+.|..||.. +|+........ ....... ...+++..+++++.+|.|..||+.+ ++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~ 203 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--LE 203 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--CC
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Ce
Confidence 9999999999999984 55544322211 0011111 1224457888999999999999988 88
Q ss_pred EEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcc-cccCCC-eEEEEeeCC
Q 003327 636 TLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCT-SFALPS-QVLICSRNG 708 (829)
Q Consensus 636 ~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~-~~~~~~-~i~~~t~~g 708 (829)
.++.+.. ......+..+.+++..+++++.+|.|.+|| .+++.+..+... .++...... ....++ .++.++.||
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 8877765 334456667777888999999999999999 888887665432 233222111 112233 577788899
Q ss_pred eEEEEeCCCCcEEEEEecCCcccc-ccccccc-----cccc-------ccc-ccCCCcEEEEEccCCcEEEEEeecCc
Q 003327 709 SIYSFEQESGNLLWEYSVGDPITA-SAYIDEH-----LQLK-------LES-CLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~-----~~~~-------~~~-~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.|..||..+++.+..+........ ..+.... ..+. ..+ ....+..+++++.||.|++||..++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 999999999998877664322111 1110000 0000 000 01135789999999999999988764
No 147
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=99.54 E-value=2.1e-12 Score=152.07 Aligned_cols=314 Identities=7% Similarity=0.005 Sum_probs=174.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec----
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---- 556 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---- 556 (829)
..|.++.||+||.+| +++||..++++.-... ....+ .... .+++.+|+++.+ +|+++|..+++.......
T Consensus 69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i--~~i~-~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l 143 (758)
T 3ott_A 69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDV--RTMA-LQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGL 143 (758)
T ss_dssp EEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCE--EEEE-EETTEEEEEETT-EEEEEETTTCCEEEECHHHHCC
T ss_pred EEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceE--EEEE-ecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCc
Confidence 356789999999876 8999998876532100 01112 1222 345789999865 899999888776432111
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
... ....++.+.++.||+|+. ++|+.+|..+++........ .....+.+.+.+++.||+++. ++|+.+|+.+
T Consensus 144 ~~~-~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 144 PNN-TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCS-CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CCC-eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 111 122244456789999986 47999999888754321111 111223444444568999996 5699999876
Q ss_pred CCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--ceeecC---cccccCCCeEEEEe
Q 003327 632 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGP---CTSFALPSQVLICS 705 (829)
Q Consensus 632 ~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~~~~~~---~~~~~~~~~i~~~t 705 (829)
++........... ........++.+|+|+ +++++.++ .+++......... ..++.. ++..+.++.||+||
T Consensus 221 --~~~~~~~~l~~~~-i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 221 --GQIKQTEAFHNNS-IKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp --TEEEEEEEEEEEE-EEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred --CeEEeccCCCCCe-EEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 5432211111111 1112233578999999 56899999 6655432221111 111111 23356788999999
Q ss_pred eCCeEEEEeCCCCcEEEEEec--C----CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003327 706 RNGSIYSFEQESGNLLWEYSV--G----DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
..| +..+. .+..+...... . .......+ ...++.+|+|+.+ +++.++..++......+.
T Consensus 297 ~~G-l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~------------~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~ 361 (758)
T 3ott_A 297 DYG-ISLSR-YNSALQFIPISQITGTGDGNQFYSLF------------RDSKGFYWFGGAN-GLIRFTDPAGERHDAIWY 361 (758)
T ss_dssp SSS-EEEEC-CCC-CEEEEHHHHSCSCCCCBEEEEE------------ECTTCCEEEEETT-EEEEESCTTSSCCCCEEE
T ss_pred CCc-ccccc-cCCceeEEecccCCCCCCCceEEEEE------------EcCCCCEEEeeCC-cceeecccccccceeEEe
Confidence 876 66554 33333322110 0 01111111 2237899999864 688887654321111000
Q ss_pred ccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccc
Q 003327 780 KDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.... ....+....+.+... .++.||+|+ +++|++||.++++++
T Consensus 362 ~~~~----~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 362 RMGD----KTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp CTTC----SSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE
T ss_pred ccCC----cCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE
Confidence 0000 000122222333333 268999999 578999999888764
No 148
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.6e-13 Score=144.41 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=163.6
Q ss_pred CCeEEEEecCCCcEEEEECCC---Cc---EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC---CCcEEEEEe
Q 003327 485 SDIYLFVGSHSHKFICADAKR---SS---VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL---TGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---g~---~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~---tG~~~w~~~ 555 (829)
++..++.|+.||.|..||..+ +. ....+. +.....+..+.+++..+++++.|+.|..||.. +|+......
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 567899999999999999876 43 233333 33334567788888899999999999999984 666554332
Q ss_pred cC-------------Ceeeee-eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccceeecCCCEEEEEe
Q 003327 556 TC-------------GEVKCQ-PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVAS 619 (829)
Q Consensus 556 ~~-------------~~~~~~-~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t 619 (829)
.+ ..+.+. ....+++..+++++.|+.|+.||..+++.++.+.. +........+.+++..+++++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 11 111111 11234567889999999999999999999998876 344555666777778899999
Q ss_pred cCCeEEEEEccCCCceEEEeeccC-Ccceeeee----eeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-ee----
Q 003327 620 TSGRLTAISVKALPFHTLWLHELE-VPAFASLC----ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IF---- 688 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~----~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~---- 688 (829)
.+|.|..||+.+ ++.+..+... .....+.. +..++..++.++.++.|.+|| .+++.+..+..... +.
T Consensus 234 ~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 234 TRGIIDIWDIRF--NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp TTSCEEEEETTT--TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred CCCeEEEEEcCC--ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 999999999998 7776655422 22223332 223445788888899999999 88887766553211 00
Q ss_pred -----------------e--cCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003327 689 -----------------A--GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 689 -----------------~--~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
. ..++....+..++.++.||.|+.||..+++....+.
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred cccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence 0 001122223468888899999999999998765544
No 149
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.52 E-value=8.3e-12 Score=145.62 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=179.3
Q ss_pred eceEEeeC-CcEEEEEEeCCEEEEEEcCCC-----cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003327 520 CSAAVLAD-FSQVVVGCYKGKIYFLDYLTG-----DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 520 ~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
.+..+..+ ...+++|+.|+.|..||..++ .....+..+........+.+++..+++|+.|+.|+.||..+++.+
T Consensus 386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST 465 (694)
T ss_dssp EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce
Confidence 34444433 357889999999999998764 233445555554555667777889999999999999999999998
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc----CCcceeeeeeeecC--CEEEEEeeCCe
Q 003327 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL----EVPAFASLCITSAN--RHVICCLVDGH 667 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~----~~~~~~s~~~~~~~--~~l~~~~~~g~ 667 (829)
..+..+.....+..+..++..++.++.|+.|..||... ........ +.....+..+.+++ ..++.++.++.
T Consensus 466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 542 (694)
T 3dm0_A 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe
Confidence 88876666666677777778899999999999999764 33333221 11223344454443 57889999999
Q ss_pred EEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003327 668 VVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 668 i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
|.+|| .+++....+.... .+.+..+.+ .+..+..++.||.|..||..+++.+..+.....+....+.
T Consensus 543 v~vwd~~~~~~~~~~~~h~~~v~~v~~sp--dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s--------- 611 (694)
T 3dm0_A 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS--------- 611 (694)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEEC---------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEc---------
Confidence 99999 8888776654332 232222111 2456788899999999999999988766554433322211
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCccccccccccccc-eee---eeeccCCcc--cccceE--ECCEEEEeeeCCeEE
Q 003327 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMV-QEF---AKLELQGDI--FSSPVM--IGGRVFVGCRDDYIY 817 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~--~~~~~~--~~~~l~vg~~~g~l~ 817 (829)
. ++.+++++.+++|.+||..++..-.......... ... ......... ..+... .+..|+.|+.||.|+
T Consensus 612 ---p-~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 612 ---P-NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp ---S-SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---C-CCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 1 3344444556779999988653211110000000 000 000000000 111112 356889999999999
Q ss_pred EEecc
Q 003327 818 CIALE 822 (829)
Q Consensus 818 ~~d~~ 822 (829)
.||..
T Consensus 688 iW~i~ 692 (694)
T 3dm0_A 688 VWGIG 692 (694)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 99975
No 150
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.3e-11 Score=126.43 Aligned_cols=292 Identities=11% Similarity=0.035 Sum_probs=172.8
Q ss_pred cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEe-c-CCeeeeeeeeecCCCEEEEeccCCeE
Q 003327 507 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQ-T-CGEVKCQPVVDAPRQLIWCGSHDHNL 582 (829)
Q Consensus 507 ~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~-~-~~~~~~~~~~~~~~~~i~~gs~~g~l 582 (829)
+.+..+..+.....+..++++ .+++|+.|+.|..||..++. .+..+. . +........+.+++..+.+++.|+.+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 334444444443444555544 88999999999999988764 333332 2 33334455667778889999999999
Q ss_pred EEEEcCC-------CeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC--CceEEEeeccCCcceeeeeee
Q 003327 583 YALDFRN-------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL--PFHTLWLHELEVPAFASLCIT 653 (829)
Q Consensus 583 ~~~d~~t-------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~--~g~~~w~~~~~~~~~~s~~~~ 653 (829)
+.||..+ ++++..+..+........+.+++..++.++.|+.+..||.... ..+.+..+........+..+.
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999853 3444445444445556667777788999999999999998531 123344444444444566777
Q ss_pred ecCCEEEEEeeCCeEEEEc-CCC--CEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC----cEEEEEe
Q 003327 654 SANRHVICCLVDGHVVALD-SSG--SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG----NLLWEYS 725 (829)
Q Consensus 654 ~~~~~l~~~~~~g~i~~~d-~~g--~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG----~~~w~~~ 725 (829)
+++..++.++.++.|..|| .++ +.+..+... ..+....+.+......+..++.|+.|..||..++ ...|...
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 7888999999999999999 655 333333322 2333322111111235788899999999997654 2223221
Q ss_pred ------cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCc-cc
Q 003327 726 ------VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGD-IF 797 (829)
Q Consensus 726 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 797 (829)
....+....+. .++.+++++.||.|.+||..++.. +..... ..... .+
T Consensus 243 ~~~~~~h~~~v~~v~~s-------------~~~~l~s~~~dg~v~iw~~~~~~~-----------~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWG-------------FNGLIASVGADGVLAVYEEVDGEW-----------KVFAKRALCHGVYEI 298 (330)
T ss_dssp EECCSCCSSCEEEEEEC-------------TTSCEEEEETTSCEEEEEEETTEE-----------EEEEEESCTTTTSCE
T ss_pred eecccccccceEEEEEc-------------CCCEEEEEeCCCEEEEEEcCCCce-----------EEEeccccccccceE
Confidence 11112111111 256889999999999999875410 011111 11111 11
Q ss_pred c----cceEECCEEEEeeeCCeEEEEecccc
Q 003327 798 S----SPVMIGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 798 ~----~~~~~~~~l~vg~~~g~l~~~d~~tg 824 (829)
. +|...+..|..|+.||.|+.||.++.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 1 12112346788999999999998753
No 151
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=99.51 E-value=2.8e-12 Score=150.95 Aligned_cols=301 Identities=15% Similarity=0.115 Sum_probs=168.5
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC---ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-
Q 003327 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ- 555 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~- 555 (829)
-+.+|.++.||+||.+| |..||..+ + ..+.... ......++.+..+.||+|+. .+|++||..+++......
T Consensus 26 ~I~qD~~G~lWigT~~G-L~ryDG~~--~-~~~~~~~~~~~~~i~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 26 CFLQDSEGLIWIGSNKG-LFSYDGYS--T-QQHFTYGENNNTRIYCGVIIDNTYLYMGTD-NGILVYNYRADRYEQPETD 100 (758)
T ss_dssp EEEECTTSCEEEEESSC-EEEECSSC--E-EECSCTTSTTSSCEEEEEEETTTEEEEEET-TEEEEEETTTTEECCCSCC
T ss_pred EEEECCCCCEEEEECCC-ccccCCCc--e-EEEEccCCCCCceEEEEEEcCCCcEEEEeC-CCeEEEeCCCCEEECcccC
Confidence 34678999999999887 88898432 1 1221111 11113344566689999995 569999988875432100
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
....+.. +.. .++.||+++.+ +|+++|..+++....... ....+.+.+ .+.++.+|+++.+ +|+.++..+
T Consensus 101 ~~~~i~~--i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWigt~~-Gl~~~~~~~ 174 (758)
T 3ott_A 101 FPTDVRT--MAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSII-RTKDNQIYVGTYN-GLCRYIPSN 174 (758)
T ss_dssp CCSCEEE--EEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEE-ECTTCCEEEEETT-EEEEEETTT
T ss_pred CCceEEE--EEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEE-EcCCCCEEEEeCC-CHhhCccCC
Confidence 0111221 222 46899999876 799999988765432111 111122223 3346889999975 599999876
Q ss_pred CCceEEEeeccCC------cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003327 632 LPFHTLWLHELEV------PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 632 ~~g~~~w~~~~~~------~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
++... +.... ....+......++.+|+|+. ++++.+| .+++........... ...+..+.++.+|+|
T Consensus 175 --~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~--i~~i~~d~~g~lWig 248 (758)
T 3ott_A 175 --GKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNS--IKSLALDGNGDLLAG 248 (758)
T ss_dssp --TEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEE--EEEEEECTTCCEEEE
T ss_pred --CceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCe--EEEEEEcCCCCEEEE
Confidence 44322 11111 11122222223567999995 6899999 665443211111111 112335668899999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCC-------ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccc
Q 003327 705 SRNGSIYSFEQESGNLLWEYSVGD-------PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKEN 777 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~ 777 (829)
+. ++|+.++..++++........ ....+.+. ..++.+|+|+..| +..+... ...
T Consensus 249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~------------D~~g~lWiGT~~G-l~~~~~~-~~~---- 309 (758)
T 3ott_A 249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA------------DQEHNIWLGTDYG-ISLSRYN-SAL---- 309 (758)
T ss_dssp ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE------------CTTCCEEEEESSS-EEEECCC-C-C----
T ss_pred eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE------------cCCCCEEEEeCCc-ccccccC-Cce----
Confidence 95 579999998887643221111 11111111 2378899999876 6554321 100
Q ss_pred ccccccceeeeee----ccCCcccccceE-ECCEEEEeeeCCeEEEEecccc
Q 003327 778 QSKDHMVQEFAKL----ELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 778 ~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~~tg 824 (829)
+.+... .+.+..+.+... .++.||+|+. ++|++++..++
T Consensus 310 -------~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~ 353 (758)
T 3ott_A 310 -------QFIPISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAG 353 (758)
T ss_dssp -------EEEEHHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTS
T ss_pred -------eEEecccCCCCCCCceEEEEEEcCCCCEEEeeC-Ccceeeccccc
Confidence 111000 112223333333 3689999995 57999987654
No 152
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.50 E-value=5.4e-11 Score=123.95 Aligned_cols=271 Identities=14% Similarity=0.095 Sum_probs=175.2
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC--CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003327 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
..+.+ +.|.+| .|+.|+.||..+|+.+..+..+ .....+..+.+++..+++|+.|+.+..||.++++.+..+..+.
T Consensus 32 ~WS~~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~ 109 (318)
T 4ggc_A 32 DWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 109 (318)
T ss_dssp EECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc
Confidence 34444 466666 4999999999999998877543 3334555677778899999999999999999999998887655
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003327 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
........ ++..+..++.++.+..++..+. ...+..................+..++.++.++.+.+|| .+++...
T Consensus 110 ~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 110 ARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred ceEEEeec--CCCEEEEEecCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence 44333333 3478889999998888887752 222333333333334555666788899999999999999 7665332
Q ss_pred E----ee-cCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc
Q 003327 680 R----CR-TGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 680 ~----~~-~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
. .. ..+.+....... .....+++ ++.++.|..||..++...........+....+... ++
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~------------~~ 253 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCP-WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH------------YK 253 (318)
T ss_dssp CCSEEECCCCSCEEEEEECT-TSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT------------TT
T ss_pred cceeeecccCCceEEEEecC-CCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc------------cc
Confidence 1 11 112222221111 12233433 34678899999998888776665555443332222 45
Q ss_pred EEEEE--ccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003327 753 LVCIC--TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 753 ~l~~~--~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.++++ +.+|.|++||..++ +....+.-+...+.+..+ .+..|+.|+.||.|..||+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~-------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTM-------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCCC-------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 55554 47899999998865 233333322222333333 3557888999999999998643
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.50 E-value=3.1e-11 Score=126.79 Aligned_cols=277 Identities=13% Similarity=0.086 Sum_probs=177.5
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcE-EEEEecCCeee
Q 003327 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDI-YWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~-~w~~~~~~~~~ 561 (829)
..+.+|+ .+.++.|..||..+|+.......+.... ...++++++.+|+.+. ++.|+.||..+++. ......+....
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 3455555 4467899999999999988877665544 7778888888888877 78999999999997 66665554444
Q ss_pred eeeeeecCCCEEEEeccCC---eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCe-EEEEEccCCCceE
Q 003327 562 CQPVVDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGR-LTAISVKALPFHT 636 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~-l~~~~~~~~~g~~ 636 (829)
....+.+++..++++..++ .|+.||..+++.+..+..+... ..+.+++++..+|++.. ++. +..|+++. .|..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-~g~~ 164 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA-VGIAISPNGNGLILIDRSSANTVRRFKIDA-DGVL 164 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE-EEEEECTTSSCEEEEEETTTTEEEEEEECT-TCCE
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc-cceEECCCCCEEEEEecCCCceEEEEEECC-CCcE
Confidence 4356777778888655553 8999999999988877654433 45667776677887754 467 88888774 2332
Q ss_pred EEe---eccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCE---EEEeecCCceeecCcccccCCC-eEEEEee-
Q 003327 637 LWL---HELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSI---IWRCRTGGPIFAGPCTSFALPS-QVLICSR- 706 (829)
Q Consensus 637 ~w~---~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~---~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~- 706 (829)
... ............+.++++.+|+... ++.|.+|| .+++. +.....+..... +....++ .+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGT---IVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCC---EEECTTSSEEEEECSS
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCce---EEECCCCCEEEEEEcC
Confidence 211 1111122245567777877887764 67899999 88887 666554432211 1222344 4777754
Q ss_pred CCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeecC
Q 003327 707 NGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~ 771 (829)
++.|+.||.++|++......... ....+.... .......++..+|+++. ++.|.+||....
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA----NQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC----CCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccc----cceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 56799999999988432221111 100000000 00012234677777655 568999998743
No 154
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.50 E-value=4.9e-12 Score=133.49 Aligned_cols=257 Identities=12% Similarity=0.105 Sum_probs=174.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCc----EEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEc-CCCcEEEEEec--
Q 003327 485 SDIYLFVGSHSHKFICADAKRSS----VLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDY-LTGDIYWTFQT-- 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~-~tG~~~w~~~~-- 556 (829)
++..+++++.++.|..||..+++ ..... .+.....+..+.+++. .+++|+.|+.|+.||. .+++.. .+..
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~ 99 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNE 99 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccccC
Confidence 46678999999999999998887 44433 3344445777888888 8999999999999999 888763 3443
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC---------CeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEE
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAI 627 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~ 627 (829)
+........+.+ ++.+++++.|+.|+.||..+ ++++..+..... .....+.+ +.+++++.++.|..|
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK-IFTMDTNS--SRLIVGMNNSQVQWF 175 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC-EEEEEECS--SEEEEEESTTEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc-eEEEEecC--CcEEEEeCCCeEEEE
Confidence 433344455666 78999999999999999887 666665553332 33344444 449999999999999
Q ss_pred EccC-CCceEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCC------CEEEEeecCC----------cee
Q 003327 628 SVKA-LPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSG------SIIWRCRTGG----------PIF 688 (829)
Q Consensus 628 ~~~~-~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g------~~~w~~~~~~----------~~~ 688 (829)
|..+ .................+..+.+ ++..+++++.+|.+.+|+ ..+ +....+.... .+.
T Consensus 176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 9875 22111111112222335566777 788999999999999988 544 5555554332 222
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCc
Q 003327 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
...+. ..+..+++++.+|.|+.||..+++.+..+... ........ .++..+++++.||.
T Consensus 256 ~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-------------~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 256 SIEFS--PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-------------CSDNILCLATSDDT 315 (342)
T ss_dssp EEEEC--TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-------------ECSSEEEEEEECTH
T ss_pred EEEEc--CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-------------CCCCeEEEEecCCc
Confidence 22111 12456888999999999999999988776543 22211111 22778888888885
No 155
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.49 E-value=2.7e-12 Score=136.85 Aligned_cols=286 Identities=7% Similarity=0.010 Sum_probs=176.5
Q ss_pred EEcCCceeeceEEeeC---CcEEEEEEeCCEEEEEEcCC-CcEE-EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEE
Q 003327 512 IKLEGRIECSAAVLAD---FSQVVVGCYKGKIYFLDYLT-GDIY-WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~---~~~v~vg~~dg~l~~~d~~t-G~~~-w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d 586 (829)
+..+.....+..++++ +..+++|+.|+.|+.||..+ ++.+ ..+..+........+.+++..+++++.||.|+.||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 3344445567778877 47899999999999999987 6554 44554554455566777778999999999999999
Q ss_pred cCCCeEEEeeccCCccccccee--ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003327 587 FRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~--~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
..+++.+........ .....+ ..++..+++++.+|.+..||+.+ ++.+..+...... ..+......+++++.
T Consensus 115 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 115 LSSNQAIQIAQHDAP-VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNPMMVLQLPERC---YCADVIYPMAVVATA 188 (368)
T ss_dssp TTTTEEEEEEECSSC-EEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSCSEEEECSSCE---EEEEEETTEEEEEEG
T ss_pred cCCCCceeeccccCc-eEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcEEEEEecCCCc---eEEEecCCeeEEEeC
Confidence 999998775544333 334444 55456788899999999999987 7776666654432 233334668889999
Q ss_pred CCeEEEEc-CCCCEEEEeecC---CceeecCccccc--CCCeEEEEeeCCeEEEEeCCCC---cEEEEEecCCcccccc-
Q 003327 665 DGHVVALD-SSGSIIWRCRTG---GPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESG---NLLWEYSVGDPITASA- 734 (829)
Q Consensus 665 ~g~i~~~d-~~g~~~w~~~~~---~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~- 734 (829)
++.+..|+ .++...+..... .......+.... ....+++++.+|.|..||..++ +....+..........
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 99999999 655544433211 111111100110 1123889999999999999887 3444444332210000
Q ss_pred ccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeee
Q 003327 735 YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR 812 (829)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~~ 812 (829)
.......+.......++.++++++.||.|++||..++ +....+......+..... .+..|..++.
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-------------TKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-------------cEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 0000000000111234779999999999999998865 223333222222222222 3457777777
Q ss_pred CCeE
Q 003327 813 DDYI 816 (829)
Q Consensus 813 ~g~l 816 (829)
++..
T Consensus 336 d~~~ 339 (368)
T 3mmy_A 336 YDWS 339 (368)
T ss_dssp CCST
T ss_pred cccc
Confidence 6643
No 156
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.4e-11 Score=133.75 Aligned_cols=289 Identities=11% Similarity=0.031 Sum_probs=179.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCe--------------------------------------
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGE-------------------------------------- 559 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~-------------------------------------- 559 (829)
+..++.++..++ ++.++.|+.||..+|+ .+..+..+..
T Consensus 9 ~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 9 NLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp EEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 445777777544 4468899999999998 5433332110
Q ss_pred ----------------eeeeeeeecCCCEE-EEeccCCeEEEEEcC--CCeEEEeecc--CCcccccceeecCCCEEEEE
Q 003327 560 ----------------VKCQPVVDAPRQLI-WCGSHDHNLYALDFR--NYRCVYKLPC--GGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 560 ----------------~~~~~~~~~~~~~i-~~gs~~g~l~~~d~~--tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~ 618 (829)
......+.+++..+ ++++.|+.+..||.. +|+.+..+.. .........+.+++..|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 13344566667775 778899999999998 8877766542 23334456677777899999
Q ss_pred ecCCeEEEEEccCCCceEEE----eeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeec--CCcee
Q 003327 619 STSGRLTAISVKALPFHTLW----LHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRT--GGPIF 688 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w----~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~~~~ 688 (829)
+.+|.++.|++.+ ++... .+........+..+.++ +..++.++.++.|.+|| .+++.+..+.. ...+.
T Consensus 168 ~~~g~v~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 168 DKFGDVYSIDINS--IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp ETTSEEEEEETTS--CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred eCCCcEEEEecCC--cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 9999999999876 44321 22223333456677777 67889999999999999 88887755332 22333
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccc--------------ccccccccccccCCCcEE
Q 003327 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI--------------DEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l 754 (829)
... .. .+..++.++.|+.|..||..+|+.+..+.....+...... .....+.......++.++
T Consensus 246 ~~~-~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 246 SIC-CG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEE-EC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEE-EC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 322 22 4567889999999999999999988776643211100000 000000011123347788
Q ss_pred EEEc-cCCcEEEEEe--ecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCC----------eEEEEec
Q 003327 755 CICT-SSGSIHILRV--NLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDD----------YIYCIAL 821 (829)
Q Consensus 755 ~~~~-~~G~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~~g----------~l~~~d~ 821 (829)
++++ .++.|++|+. ..+.. .+........+. +....+..+.+++...+. .+|.++.
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~----------l~~~~~~~~~~~-v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGD----------LALKQIITFPYN-VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTC----------EEEEEEEECSSC-EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEECCCCeEEEEEeccCCCCc----------eeeccEeccCCc-eEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 8888 8999999998 32200 122223333322 333344556666664332 6777777
Q ss_pred ccccc
Q 003327 822 ETQHL 826 (829)
Q Consensus 822 ~tg~~ 826 (829)
+++++
T Consensus 392 ~~~~~ 396 (450)
T 2vdu_B 392 NENSF 396 (450)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 77765
No 157
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.49 E-value=9e-12 Score=137.00 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=158.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc-----------EEEEEEcCC------------ceeeceEEeeCC--cEEEEEEe
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSS-----------VLWEIKLEG------------RIECSAAVLADF--SQVVVGCY 536 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~-----------~~w~~~~~~------------~~~~~~~~~~~~--~~v~vg~~ 536 (829)
++.++..|.+|+.+|.|..||..+++ +...+..+. ....+..+.+++ ..+++++.
T Consensus 36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~ 115 (447)
T 3dw8_B 36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115 (447)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence 34467789999999999999998877 344555553 334566777776 68999999
Q ss_pred CCEEEEEEcCCCcEEE---------------------------------------EE-ecCCeeeeeeeeecCCCEEEEe
Q 003327 537 KGKIYFLDYLTGDIYW---------------------------------------TF-QTCGEVKCQPVVDAPRQLIWCG 576 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w---------------------------------------~~-~~~~~~~~~~~~~~~~~~i~~g 576 (829)
|+.|..||..+++... .+ ..+........+.+++..+++|
T Consensus 116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 195 (447)
T 3dw8_B 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA 195 (447)
T ss_dssp SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence 9999999987755431 11 1122223344556667778887
Q ss_pred ccCCeEEEEEcCCCeEEEe--------eccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceE----EEeeccC
Q 003327 577 SHDHNLYALDFRNYRCVYK--------LPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHT----LWLHELE 643 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~--------~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~----~w~~~~~ 643 (829)
.|+.|+.||..++..... +..+........+.+++ ..+++++.+|.|..||..+ ++. ...+...
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~ 272 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA--SALCDRHSKLFEEP 272 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT--CSSSCTTCEEECCC
T ss_pred -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC--CccccceeeEeccC
Confidence 799999999985443333 22233445556667666 7899999999999999987 553 3334333
Q ss_pred Cc------------ceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CCEEEEeecCCceeec-------------Cccccc
Q 003327 644 VP------------AFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGPIFAG-------------PCTSFA 696 (829)
Q Consensus 644 ~~------------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~~~~~~-------------~~~~~~ 696 (829)
.. ...+..+.+++..++.++. +.|.+|| .+ ++.+..+.....+... ..+...
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s 351 (447)
T 3dw8_B 273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence 22 4456677777888888887 9999999 65 7766555443221110 001122
Q ss_pred -CCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003327 697 -LPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 697 -~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
.+..|+.++.||.|+.||..+++.+.
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCccee
Confidence 24568888999999999999998763
No 158
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.48 E-value=1.2e-11 Score=131.77 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=172.2
Q ss_pred CeEEEEecCCCcEEEEECCC-CcEE-EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKR-SSVL-WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t-g~~~-w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..|++|+.+|.|..||..+ ++.. ..+..+.....+..+.+++..+++++.|+.|..||..+++.+........+.+.
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 133 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTI 133 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEE
Confidence 47899999999999999987 5554 445555555567788888889999999999999999999988766555554443
Q ss_pred eee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003327 564 PVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 564 ~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.+ .+++..+++++.|+.++.||..+++.+..+........ .... ...+++++.++.+..|+... ....+...
T Consensus 134 -~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 207 (368)
T 3mmy_A 134 -HWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC-ADVI--YPMAVVATAERGLIVYQLEN--QPSEFRRI 207 (368)
T ss_dssp -EEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE-EEEE--TTEEEEEEGGGCEEEEECSS--SCEEEEEC
T ss_pred -EEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE-EEec--CCeeEEEeCCCcEEEEEecc--ccchhhhc
Confidence 34 45566788999999999999999988887766553322 2222 47888899999999999886 33333221
Q ss_pred cC--CcceeeeeeeecCC----EEEEEeeCCeEEEEc-CCC---CEEEEeecCC-------------ceeecCccccc-C
Q 003327 642 LE--VPAFASLCITSANR----HVICCLVDGHVVALD-SSG---SIIWRCRTGG-------------PIFAGPCTSFA-L 697 (829)
Q Consensus 642 ~~--~~~~~s~~~~~~~~----~l~~~~~~g~i~~~d-~~g---~~~w~~~~~~-------------~~~~~~~~~~~-~ 697 (829)
.. ........+..... .+++++.++.+..|+ ..+ .....+.... .+.... .. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~sp~ 284 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIA---FHPV 284 (368)
T ss_dssp CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEE---ECTT
T ss_pred cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEE---EecC
Confidence 11 11112222322222 388899999999999 655 2333333221 122211 22 2
Q ss_pred CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 698 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+..+++++.||.|+.||..+++.+..+............ ..++.++++++.++
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF-----------NHNGNIFAYASSYD 337 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE-----------CTTSSCEEEEECCC
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE-----------CCCCCeEEEEeccc
Confidence 347888999999999999999988776543322211111 12377788888776
No 159
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.48 E-value=4e-12 Score=137.74 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=157.1
Q ss_pred EEEecCCCcEEEEECCCC-cE---EEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCC-------cEEEEEec
Q 003327 489 LFVGSHSHKFICADAKRS-SV---LWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTG-------DIYWTFQT 556 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg-~~---~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG-------~~~w~~~~ 556 (829)
++.++.+|.|..||..+. +. ...+..+.....+..+.+ ++..+++|+.|+.|..||..++ +.+..+..
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 444678899999998543 21 112233444455677777 7789999999999999999988 45556665
Q ss_pred CCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEee--ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003327 557 CGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKL--PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 557 ~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+........+.+++ ..+++++.|+.|+.||..+++.+..+ ..+........+.+++..+++++.+|.|..||+.+
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-- 207 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-- 207 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--
Confidence 55545555666654 68899999999999999999999888 44555556667777778899999999999999988
Q ss_pred ceEEEee-ccCCcc-eeeeeeeecCCEEEEE---eeCCeEEEEc-CCCCE-EEEe--ecCCceeecCcccccC-CCeEEE
Q 003327 634 FHTLWLH-ELEVPA-FASLCITSANRHVICC---LVDGHVVALD-SSGSI-IWRC--RTGGPIFAGPCTSFAL-PSQVLI 703 (829)
Q Consensus 634 g~~~w~~-~~~~~~-~~s~~~~~~~~~l~~~---~~~g~i~~~d-~~g~~-~w~~--~~~~~~~~~~~~~~~~-~~~i~~ 703 (829)
++.+... ...... .....+.+++..++++ +.++.|.+|| .+++. +... .....+.... ... +..+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~ 284 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF---FDPDTNIVYL 284 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE---EETTTTEEEE
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE---EcCCCCEEEE
Confidence 8877766 333222 3455566666666676 5789999999 66543 2222 2222222211 222 345654
Q ss_pred -EeeCCeEEEEeCCCCc
Q 003327 704 -CSRNGSIYSFEQESGN 719 (829)
Q Consensus 704 -~t~~g~l~~~d~~tG~ 719 (829)
++.||.|+.||..+++
T Consensus 285 ~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 285 CGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EETTCSCEEEEEECSST
T ss_pred EEcCCCeEEEEEecCCC
Confidence 4569999999999988
No 160
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.48 E-value=1.1e-13 Score=117.44 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----chHHHHHHHHHHHHhcCC
Q 003327 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----SSEIFLSSIKSWVSSKLP 241 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~l~~~l~~~l~ 241 (829)
||.||+||++|++|+|.+||++|.+||+|.++++++.+++..++.+++++++ ++.. ..+.+.+.|++++++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998887777766677888889888 4432 223455667777765543
Q ss_pred CCCcCCeEEEeC--cccCCCCCCcchh
Q 003327 242 LAMIPNRFVFMD--SLPMTSSGKVDYA 266 (829)
Q Consensus 242 ~~~~p~~~~~~~--~lP~t~~GKi~r~ 266 (829)
+|..+.+++ +||+| +||++|.
T Consensus 80 ---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 ---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ---SCCEEEEECTTCSCCC----CCCE
T ss_pred ---CceEEEEECCCCccCC-CCceEEE
Confidence 334777777 89999 9999874
No 161
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.48 E-value=2e-11 Score=129.11 Aligned_cols=289 Identities=8% Similarity=-0.008 Sum_probs=178.0
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE---ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EE
Q 003327 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF---QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~ 593 (829)
.....+++++..|++|+.|+.|..||..+++..... ..+........+.+++..|++|+.|+.+..||..+++ .+
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 345678888889999999999999999888654332 2233344455677778899999999999999988774 34
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+..+........+.+++..++.++.++.+..||+.+... ..+..............+.+++..++.++.++.+..||
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 45554555556667777788999999999999999876211 22333333333445666777888999999999999999
Q ss_pred -CCCCEE--EEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc-----------EEEE----Ee--cCCccc
Q 003327 673 -SSGSII--WRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-----------LLWE----YS--VGDPIT 731 (829)
Q Consensus 673 -~~g~~~--w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~-----------~~w~----~~--~~~~~~ 731 (829)
.+++.. ..+... ..+.+..+.+ .+..+..++.||.|..|+...+. ..|. +. ....+.
T Consensus 179 ~~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (345)
T 3fm0_A 179 EEEDDWVCCATLEGHESTVWSLAFDP--SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY 256 (345)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEE
T ss_pred ecCCCEEEEEEecCCCCceEEEEECC--CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEE
Confidence 666533 222221 2232222111 24468888999999999853221 1111 10 001111
Q ss_pred cccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeee-eccCCcccccceE--EC-CEE
Q 003327 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK-LELQGDIFSSPVM--IG-GRV 807 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~l 807 (829)
. ......++.+++++.|+.|.+|+...+..... ........ ...+...+..... .+ +.|
T Consensus 257 ~------------v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 257 D------------IAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-----PTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp E------------EEECTTTCCEEEEETTSCEEEEEECTTSCTTS-----CCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred E------------EEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-----eeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 1 11123477899999999999999875421100 00000000 0111122222222 23 367
Q ss_pred EEeeeCCeEEEEecccccc
Q 003327 808 FVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 808 ~vg~~~g~l~~~d~~tg~~ 826 (829)
..++.||.|..|+..+++.
T Consensus 320 aS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 320 ASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEETTSCEEEEEECC---
T ss_pred EEcCCCCcEEEEEecCCCC
Confidence 7889999999999988764
No 162
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=1.3e-11 Score=129.32 Aligned_cols=228 Identities=13% Similarity=0.152 Sum_probs=160.7
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCC----
Q 003327 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCG---- 558 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~---- 558 (829)
.++.+|+++. ++.|..+|+.|++++.++...... ...++++++ .+|+++ +++.|+.||++++++.+++..+.
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p-~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP-RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE-EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC-cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 3577888775 578999999999998887643332 244555664 899998 78999999999999998887655
Q ss_pred --eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-----------Ce
Q 003327 559 --EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----------GR 623 (829)
Q Consensus 559 --~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----------g~ 623 (829)
.... ..+ +++.+|++.. ++.|..+|+++++.++++..+... ....+++ ++.+|+++.. +.
T Consensus 130 ~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p-~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~ 204 (328)
T 3dsm_A 130 SGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP-TSLVMDK-YNKMWTITDGGYEGSPYGYEAPS 204 (328)
T ss_dssp TCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB-CCCEECT-TSEEEEEBCCBCTTCSSCBCCCE
T ss_pred CCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc-cceEEcC-CCCEEEEECCCccCCccccCCce
Confidence 3322 233 4588999874 789999999999999888765433 3344554 5678888764 57
Q ss_pred EEEEEccCCCceEEEeeccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE--eec-CCceeecCccccc-C
Q 003327 624 LTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR--CRT-GGPIFAGPCTSFA-L 697 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~--~~~-~~~~~~~~~~~~~-~ 697 (829)
|+++|.++ ++......... ......++.++++.+|+... .++.+| .++++.-. ... ...... +..+ .
T Consensus 205 v~~id~~t--~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g---i~vdp~ 277 (328)
T 3dsm_A 205 LYRIDAET--FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG---LTVNPN 277 (328)
T ss_dssp EEEEETTT--TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE---EEECTT
T ss_pred EEEEECCC--CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE---EEEcCC
Confidence 99999887 77766655421 12345667777899998754 899999 77775311 111 111111 2233 3
Q ss_pred CCeEEEEe-----eCCeEEEEeCCCCcEEEEEecC
Q 003327 698 PSQVLICS-----RNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 698 ~~~i~~~t-----~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
++.+|++. .++.|++||++ |+++|++..+
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence 67899986 46889999988 9999988754
No 163
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.4e-12 Score=134.13 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=164.2
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEc
Q 003327 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDF 587 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~ 587 (829)
+..+.....+..+++++..+++++.|+.|+.||.. +++.+..+..+........+..+ +..+++++.||.|+.||.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 34444445577788888899999999999999987 55666666555444444455433 688999999999999999
Q ss_pred CCCe--EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee---------
Q 003327 588 RNYR--CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS--------- 654 (829)
Q Consensus 588 ~tg~--~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~--------- 654 (829)
.+++ .+..+..+........+.++ +..+++++.+|.+..||+.+.................+..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 9997 55555545555556666665 6789999999999999998732222223333333344555555
Q ss_pred ----cCCEEEEEeeCCeEEEEc-CCCCEEEEe----ec-CCceeecCcccccC--CCeEEEEeeCCeEEEEeCCCCcEEE
Q 003327 655 ----ANRHVICCLVDGHVVALD-SSGSIIWRC----RT-GGPIFAGPCTSFAL--PSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 655 ----~~~~l~~~~~~g~i~~~d-~~g~~~w~~----~~-~~~~~~~~~~~~~~--~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
++..+++++.++.|..|| .++...+.. .. ...+....+ ..+. +..++.++.||.|..||..++...+
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 245 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-SPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 245 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE-CCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE-CCCCCCCCeEEEEeCCCEEEEEeCCCCCccc
Confidence 578899999999999999 666544332 21 122222211 1111 3467788889999999998875433
Q ss_pred EEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 723 EYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 723 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.... ...+.... ...++..+++++.+|.|++|+...+
T Consensus 246 ~~~~~~~~~~~~~v~~~~------------~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 246 KKTLLKEEKFPDVLWRAS------------WSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSSSCCSSCEEEEE------------ECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eeeeeccccCCCcEEEEE------------EcCCCCEEEEecCCCcEEEEeCCCC
Confidence 2221 11111111 1234778999999999999998843
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.45 E-value=3e-11 Score=127.08 Aligned_cols=264 Identities=9% Similarity=0.047 Sum_probs=170.4
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--eeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCC-----
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGG----- 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~----- 600 (829)
..+++++.++.|+.||..+++.++.+..+.. ......++++++.+|+. +.++.|+.||..+++.++.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 3677888899999999999999988876552 12344566666677665 456889999999999988776543
Q ss_pred cccccceeecCCCEEEEEe------------cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeE
Q 003327 601 SIFGSPAIDEVHDVLYVAS------------TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t------------~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i 668 (829)
.....+.++++++.+|++. .++.|+.||..+ ++.++....... .....+.++++.++++ ++.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQ-ITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSS-CCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEEEeCCCC-cceeEECCCCCEEEEe--CCeE
Confidence 1234556777677899886 468999999987 888777665432 2445677777878887 6889
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC--------------C----------eEEEEeCCCCcEEEE
Q 003327 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN--------------G----------SIYSFEQESGNLLWE 723 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~--------------g----------~l~~~d~~tG~~~w~ 723 (829)
+.+| .+++............ +......+..+|+.... + .|+.+|..+++.. .
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~ 233 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M 233 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E
T ss_pred EEEECCCCcEeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E
Confidence 9999 8888876665433110 10000011223332211 1 5789999999875 3
Q ss_pred EecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce
Q 003327 724 YSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV 801 (829)
Q Consensus 724 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (829)
...... ...... ...++..+|++ ++.|++||..++ +........... ....
T Consensus 234 ~~~~~~~~~~~~~~-----------~s~dg~~l~~~--~~~v~~~d~~~~-------------~~~~~~~~~~~~-~~~~ 286 (337)
T 1pby_B 234 REVRIMDVFYFSTA-----------VNPAKTRAFGA--YNVLESFDLEKN-------------ASIKRVPLPHSY-YSVN 286 (337)
T ss_dssp EEEEECSSCEEEEE-----------ECTTSSEEEEE--ESEEEEEETTTT-------------EEEEEEECSSCC-CEEE
T ss_pred eecCCCCCceeeEE-----------ECCCCCEEEEe--CCeEEEEECCCC-------------cCcceecCCCce-eeEE
Confidence 322110 000011 12236778887 689999998755 223333322221 2222
Q ss_pred E--ECCEEEEeeeCCeEEEEeccccccc
Q 003327 802 M--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 802 ~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+ .+..||+++.++.|++||..+++..
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 2 3457999999999999999988754
No 165
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.45 E-value=5.1e-12 Score=138.42 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=171.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE--cCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--e
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK--LEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--E 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~ 559 (829)
....|.+|+.||.|..||..+++..-... .+...+.+..+++ ++..|++++.|+.|..||.+++........+. .
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 210 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI 210 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence 45678899999999999998876443333 3444445667774 56799999999999999988766544333222 1
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEEE
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+..+.+++..|++|+.+|.|+.||.. ++.++.+..+...+.+..+.+++. .++.++.++.|..||+.+.......
T Consensus 211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp CCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence 22344566678899999999999999976 455566655555555556665444 5677888999999998862221111
Q ss_pred -eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----eeecCcccccCCCeEEEE-------
Q 003327 639 -LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----IFAGPCTSFALPSQVLIC------- 704 (829)
Q Consensus 639 -~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----~~~~~~~~~~~~~~i~~~------- 704 (829)
....+.....+..+.+++..++.++.++.|.+|| .+++.......... .....+........+.++
T Consensus 290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 1111222335566777888999999999999999 77766544321110 000000000111223333
Q ss_pred -----eeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 705 -----SRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 705 -----t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..++.|..||..+|+.+..+..+.. +.+...+ .+++.+++.|+ ++.|++||.+++
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f-----------spdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF-----------NPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE-----------CTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE-----------CCCCCEEEEEc-CCcEEEEECCcC
Confidence 2345799999999998876543221 2111111 12256666654 789999998765
No 166
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.45 E-value=1.3e-11 Score=135.19 Aligned_cols=284 Identities=12% Similarity=0.061 Sum_probs=166.2
Q ss_pred eceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEe--cCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003327 520 CSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ--TCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
.+..+.+ ++..|++|+.||.|+.||..+++..-... .+........+.+ ++..|++++.|+.|..||.+++.....
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 3455554 44578899999999999998876543332 2333334445554 567899999999999999988765544
Q ss_pred eccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc
Q 003327 596 LPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD 672 (829)
Q Consensus 596 ~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d 672 (829)
..... ....+..+..++..+++++.+|.|..||.+ ++.+..+........+..+.+++. .++.++.++.|.+||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~---~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS---SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC---cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 33322 223455567777899999999999999987 455555555444445666665554 566788899999999
Q ss_pred -CCCCEEEEe----ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc-ccccccccccccc
Q 003327 673 -SSGSIIWRC----RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS-AYIDEHLQLKLES 746 (829)
Q Consensus 673 -~~g~~~w~~----~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~~~~~~~~ 746 (829)
.+++..-.+ .....+.+..+.+ .+..|+.++.||.|..||..+++....+......... ..... ..
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 351 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK------AA 351 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB------CE
T ss_pred cccccccceEEEeeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE------EE
Confidence 655432211 1122333322111 2457888999999999999998876554322111000 00000 00
Q ss_pred ccCCCcEEEEE------------ccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccce-EE-CCEEEEee
Q 003327 747 CLSIDRLVCIC------------TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPV-MI-GGRVFVGC 811 (829)
Q Consensus 747 ~~~~~~~l~~~------------~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~l~vg~ 811 (829)
....+..+.++ ..++.|.+||..++ +..... ......+.+.. +. ++.+++++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-------------~~~~~l~~~~~~~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG-------------KMMCQLYDPESSGISSLNEFNPMGDTLASA 418 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-------------CEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-------------cEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence 01112233333 23456888988765 222221 11111122221 11 45555556
Q ss_pred eCCeEEEEeccccccc
Q 003327 812 RDDYIYCIALETQHLE 827 (829)
Q Consensus 812 ~~g~l~~~d~~tg~~~ 827 (829)
.++.|+.||+++|+.+
T Consensus 419 ~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 419 MGYHILIWSQQEARTR 434 (435)
T ss_dssp CSSEEEECCCC-----
T ss_pred cCCcEEEEECCcCeee
Confidence 6899999999999865
No 167
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.5e-11 Score=133.58 Aligned_cols=206 Identities=10% Similarity=0.018 Sum_probs=141.0
Q ss_pred eeceEEeeCCcEE-EEEEeCCEEEEEEcC--CCcEEEEEe--cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003327 519 ECSAAVLADFSQV-VVGCYKGKIYFLDYL--TGDIYWTFQ--TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v-~vg~~dg~l~~~d~~--tG~~~w~~~--~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
..+..+++++..+ ++++.|+.|..||.. +|+.+..+. ..........+.+++..|++++.++.++.|+..+++..
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence 3456778888886 778889999999998 888876654 22233345566777889999999999999999887643
Q ss_pred E----eeccCCcccccceeecC---CCEEEEEecCCeEEEEEccCCCceEEEeec-cCCcceeeeeeeecCCEEEEEeeC
Q 003327 594 Y----KLPCGGSIFGSPAIDEV---HDVLYVASTSGRLTAISVKALPFHTLWLHE-LEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 594 w----~~~~~~~~~~~~~~~~~---~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~-~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
. .+..+........+.++ +..++.++.++.|+.||+.+ ++.+..+. .......+..+. ++..++.++.+
T Consensus 185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ--CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--TTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--CceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 2 33333344455666765 56888899999999999987 66555422 233334566777 88899999999
Q ss_pred CeEEEEc-CCCCEEEEeecCCce-----------------------eecCcccc-cCCCeEEEEe-eCCeEEEEeC--CC
Q 003327 666 GHVVALD-SSGSIIWRCRTGGPI-----------------------FAGPCTSF-ALPSQVLICS-RNGSIYSFEQ--ES 717 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~~~~~~~-----------------------~~~~~~~~-~~~~~i~~~t-~~g~l~~~d~--~t 717 (829)
+.|.+|| .+|+.+..+.....+ .....+.. ..+..+++++ .++.|+.|+. .+
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~ 341 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ 341 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC
Confidence 9999999 899887666532100 00000111 1245677787 7899999998 55
Q ss_pred C---cEEEEEecC
Q 003327 718 G---NLLWEYSVG 727 (829)
Q Consensus 718 G---~~~w~~~~~ 727 (829)
+ +.+-.+..+
T Consensus 342 ~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 342 KGDLALKQIITFP 354 (450)
T ss_dssp TTCEEEEEEEECS
T ss_pred CCceeeccEeccC
Confidence 5 334344444
No 168
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.2e-12 Score=140.34 Aligned_cols=229 Identities=8% Similarity=-0.050 Sum_probs=148.7
Q ss_pred CCeEEEEecCCCcEEEEECCCC--cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCe
Q 003327 485 SDIYLFVGSHSHKFICADAKRS--SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~ 559 (829)
++..|++|+.++.|..||..++ +....+..+.....+..+++++..+++++.|+.|+.||..+++ ....+..+..
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 4667888889999999999988 4444454455555677888888899999999999999999887 4444433444
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE---EEeecc-CCcccccceeecCCCEEEEEecCCeEEEEEccCC---
Q 003327 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL--- 632 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~--- 632 (829)
......+.+++..+++++.|+.++.||..+++. ...+.. +........+.+++..+++++.+|.+..||+.+.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence 444556666778899999999999999998863 333433 3444555667776788999999999999998531
Q ss_pred -------------CceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCC-ceeecCcc
Q 003327 633 -------------PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI----IWRCRTGG-PIFAGPCT 693 (829)
Q Consensus 633 -------------~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~-~~~~~~~~ 693 (829)
.++.+..+ .......+..+.+++..++.++.++.|.+|| .+++. +..+.... .+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-- 258 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL-- 258 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE--
T ss_pred CCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE--
Confidence 14444444 2333345667777888999999999999999 77765 33333222 222221
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCC
Q 003327 694 SFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
...++.+++.+.++.+..|+...
T Consensus 259 -~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 259 -WANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp -EEETTEEEEEESSSSEEEECCCC
T ss_pred -EcCCCCEEEEEcCCcEEEEEeCC
Confidence 22355555555566677887653
No 169
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.44 E-value=3.4e-11 Score=127.01 Aligned_cols=276 Identities=8% Similarity=0.005 Sum_probs=170.3
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEc-CCCe
Q 003327 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDF-RNYR 591 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~-~tg~ 591 (829)
...+..+++++..+++++.|+.|+.||..+++ .......... .....+.+++. .+++++.+|.|+.||. .+++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP-LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC-EEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCc-eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 34567778888899999999999999998888 5544433333 34445666677 8999999999999999 8887
Q ss_pred EEEeecc--CCcccccceeecCCCEEEEEecCCeEEEEEccCCC-------ceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003327 592 CVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP-------FHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 592 ~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~-------g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
.. .+.. +........+.+ ++.+++++.+|.+..||+.+.. ++.+..+... ....+..+. .+.++++
T Consensus 92 ~~-~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~ 166 (342)
T 1yfq_A 92 FQ-ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK-NKIFTMDTN--SSRLIVG 166 (342)
T ss_dssp EE-ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC-CCEEEEEEC--SSEEEEE
T ss_pred eE-eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC-CceEEEEec--CCcEEEE
Confidence 63 3333 334444556666 7899999999999999976300 2223333322 122333333 4459999
Q ss_pred eeCCeEEEEc-CC-CCEEEE---eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC------cEEEEEecCCccc
Q 003327 663 LVDGHVVALD-SS-GSIIWR---CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG------NLLWEYSVGDPIT 731 (829)
Q Consensus 663 ~~~g~i~~~d-~~-g~~~w~---~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG------~~~w~~~~~~~~~ 731 (829)
+.++.|..|| .+ +..... ......+....+.+ ..+..+++++.+|.+..|+.+.+ +....+.......
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP-KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS-GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEEECC-CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 9999999999 66 543221 11222232221111 02457888999999999998776 6666665443200
Q ss_pred cccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEe
Q 003327 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVG 810 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~vg 810 (829)
... .....+.......++.++++++.+|.|++||..++ +....+... ...+.+....+..|+.+
T Consensus 246 ~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~l~s~ 310 (342)
T 1yfq_A 246 KDT--NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------KKIKNFAKFNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp TCC--SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred ccc--ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-------------hHhhhhhcccCCCceEecCCCCeEEEE
Confidence 000 00000000111234778999999999999998865 223333322 22222222456688888
Q ss_pred eeCCe
Q 003327 811 CRDDY 815 (829)
Q Consensus 811 ~~~g~ 815 (829)
+.||.
T Consensus 311 s~Dg~ 315 (342)
T 1yfq_A 311 TSDDT 315 (342)
T ss_dssp EECTH
T ss_pred ecCCc
Confidence 98987
No 170
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.43 E-value=5.2e-11 Score=130.89 Aligned_cols=248 Identities=10% Similarity=0.041 Sum_probs=156.7
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc-----------EEEEEecCC------------eeeeeeeeecCC--CE
Q 003327 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD-----------IYWTFQTCG------------EVKCQPVVDAPR--QL 572 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-----------~~w~~~~~~------------~~~~~~~~~~~~--~~ 572 (829)
.+.+..+++++..+++|+.||.|..||..+++ +...+..+. .......+.+++ ..
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 34567788888999999999999999998887 355555453 223444555554 68
Q ss_pred EEEeccCCeEEEEEcCCCeEEEe---------------------------------------e-ccCCcccccceeecCC
Q 003327 573 IWCGSHDHNLYALDFRNYRCVYK---------------------------------------L-PCGGSIFGSPAIDEVH 612 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~---------------------------------------~-~~~~~~~~~~~~~~~~ 612 (829)
+++++.|+.|+.||..+++.... + ..+.....+..+.+++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 99999999999999887654311 1 1223334455566666
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEe--------eccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCE----E
Q 003327 613 DVLYVASTSGRLTAISVKALPFHTLWL--------HELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSI----I 678 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~--------~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~----~ 678 (829)
..++.+ .+|.|..||+.+ +..... .........+..+.+++ ..+++++.+|.|.+|| .+++. +
T Consensus 190 ~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEI--TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp SEEEEE-CSSEEEEEETTE--EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CEEEEe-CCCeEEEEECCC--CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 777777 799999999884 333332 22223334566677776 7999999999999999 77765 4
Q ss_pred EEeecCC-------------ceeecCcccccCCC-eEEEEeeCCeEEEEeCCC-CcEEEEEecCCccccccc---ccccc
Q 003327 679 WRCRTGG-------------PIFAGPCTSFALPS-QVLICSRNGSIYSFEQES-GNLLWEYSVGDPITASAY---IDEHL 740 (829)
Q Consensus 679 w~~~~~~-------------~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~---~~~~~ 740 (829)
..+.... .+.... ...++ .+..++. |.|..||..+ ++.+..+..+..+..... ....+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVK---FSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEE---ECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eEeccCCCccccccccccCceEEEEE---ECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 4443322 222221 22234 5666666 9999999987 777666654433221000 00000
Q ss_pred -ccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003327 741 -QLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 741 -~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.........++.++++++.||.|++||..++.
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 00001122347889999999999999998763
No 171
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.4e-10 Score=138.14 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=143.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.++..|.+|+.||.|+.||..+++....+. +...+.+..+++ +.++++++.|+.|..||..+++.+..+...+.+
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V- 101 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKI- 101 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCE-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCE-
Confidence 34467789999999999999998887665433 223344666777 668999999999999999999998887655444
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEE-Eee----------ccCCcccccceeecC-CCEEEEEecCCeEEEEEc
Q 003327 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV-YKL----------PCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISV 629 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~-w~~----------~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~ 629 (829)
....+.+++..+++|+.||.|+.||..++++. ++. ..+.....+..+.++ .+.+++++.+|.+ .||+
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 44556778889999999999999999998864 111 112223444555553 3578889999999 9999
Q ss_pred cCCCceEEEeeccC------------------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE
Q 003327 630 KALPFHTLWLHELE------------------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680 (829)
Q Consensus 630 ~~~~g~~~w~~~~~------------------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~ 680 (829)
++ ++.+..+... .....+..+.+++..++.++.|+.|..|| .+|+.+..
T Consensus 181 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 181 VE--NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp TT--TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CC--CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 87 7766555432 12345667778888999999999999999 88887643
No 172
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.42 E-value=2e-12 Score=138.65 Aligned_cols=234 Identities=12% Similarity=0.005 Sum_probs=146.5
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCC--cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EE
Q 003327 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTG--DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~ 593 (829)
..+..+++++..+++++.|+.|+.||..++ +.+..+..+........+.+++..|++++.|+.++.||..+++ ..
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 456788888889999999999999999888 5555555454445556677777889999999999999999887 44
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE---EEeecc-CCcceeeeeeeecCCEEEEEeeCCeEE
Q 003327 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHEL-EVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~---~w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
..+..+........+.+++..+++++.++.+..||.++ ++. ...... ......+..+.+++..+++++.++.+.
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ--ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC--cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 44444444455566666678899999999999999887 542 222332 333345667777888999999999999
Q ss_pred EEc-CCC------------------CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEec
Q 003327 670 ALD-SSG------------------SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSV 726 (829)
Q Consensus 670 ~~d-~~g------------------~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~~ 726 (829)
.|| .++ +.+..+.....+....+.+ .+..++.++.||.|..||..+++. +..+..
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP--SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT--TSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 999 532 2222221112222221111 234688889999999999999876 434433
Q ss_pred CCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 727 GDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 727 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+.. +....+. .++.++++++.+ .+.+|+..
T Consensus 250 ~~~~v~~~~~s------------~~~~~l~~~~~~-~~~~~~~~ 280 (377)
T 3dwl_C 250 SQLPLRSLLWA------------NESAIVAAGYNY-SPILLQGN 280 (377)
T ss_dssp SSSCEEEEEEE------------ETTEEEEEESSS-SEEEECCC
T ss_pred CCCceEEEEEc------------CCCCEEEEEcCC-cEEEEEeC
Confidence 322 2222111 125666666554 56677665
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.42 E-value=6.8e-11 Score=123.74 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=166.6
Q ss_pred EEeCCEEEEEEcCCCcEEEEEec---C---CeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 534 GCYKGKIYFLDYLTGDIYWTFQT---C---GEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~---~---~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
|+.+++|..||.+||++...+.. . +.......+. ++.+|++.. ++.|..+|+++++.+.++...... ...
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p-~~i 89 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP-RYI 89 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE-EEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC-cEE
Confidence 33468999999999988653311 0 1111222333 477887755 578999999999998887533222 233
Q ss_pred eeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCc-----ceeeeeeeecCCEEEEEee--CCeEEEEc-CCCCE
Q 003327 607 AIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVP-----AFASLCITSANRHVICCLV--DGHVVALD-SSGSI 677 (829)
Q Consensus 607 ~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~-----~~~s~~~~~~~~~l~~~~~--~g~i~~~d-~~g~~ 677 (829)
++++ ++.+|++. .++.|..+|+++ ++..+....... ......+ +++.+|++.. ++.|.++| .++++
T Consensus 90 ~~~~-~g~lyv~~~~~~~v~~iD~~t--~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 90 HFLS-DEKAYVTQIWDYRIFIINPKT--YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV 164 (328)
T ss_dssp EEEE-TTEEEEEEBSCSEEEEEETTT--TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred EEeC-CCeEEEEECCCCeEEEEECCC--CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence 4534 35899998 788999999988 888777665430 1122333 6889999974 78999999 88998
Q ss_pred EEEeecCCceeecCcccccCCCeEEEEeeC-----------CeEEEEeCCCCcEEEEEecCCc-cccccccccccccccc
Q 003327 678 IWRCRTGGPIFAGPCTSFALPSQVLICSRN-----------GSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLE 745 (829)
Q Consensus 678 ~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-----------g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~ 745 (829)
+++...+.... .+..+.++.+|+++.. +.|+++|.+++++...+..+.. ......++
T Consensus 165 ~~~i~~g~~p~---~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~-------- 233 (328)
T 3dsm_A 165 VDELTIGIQPT---SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN-------- 233 (328)
T ss_dssp EEEEECSSCBC---CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC--------
T ss_pred EEEEEcCCCcc---ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe--------
Confidence 88877643221 2234557889998764 6899999999998877665321 11111111
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-----eCCeEEE
Q 003327 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-----RDDYIYC 818 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~-----~~g~l~~ 818 (829)
.+++.+|+... .|+++|..++..... ......+.......+ .++.||+++ .++.|++
T Consensus 234 ---~d~~~lyv~~~--~v~~~d~~t~~~~~~-----------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 234 ---GTRDTLYWINN--DIWRMPVEADRVPVR-----------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp ---TTSCEEEEESS--SEEEEETTCSSCCSS-----------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred ---cCCCEEEEEcc--EEEEEECCCCceeee-----------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 23788888765 899999876532100 000111122223334 368999997 4689999
Q ss_pred Eeccccccc
Q 003327 819 IALETQHLE 827 (829)
Q Consensus 819 ~d~~tg~~~ 827 (829)
||.+ |++.
T Consensus 298 ~d~~-g~~~ 305 (328)
T 3dsm_A 298 YSPQ-GKLI 305 (328)
T ss_dssp ECTT-CCEE
T ss_pred ECCC-CCEE
Confidence 9998 7754
No 174
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.41 E-value=9e-12 Score=134.92 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=148.6
Q ss_pred EEEeCCEEEEEEcCCC-cE---EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCC-------eEEEeeccCC
Q 003327 533 VGCYKGKIYFLDYLTG-DI---YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNY-------RCVYKLPCGG 600 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG-~~---~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg-------~~~w~~~~~~ 600 (829)
.++.+|.|+.||..+. +. ...+..+........+.+ ++..+++|+.||.|..||..++ +.+..+..+.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 3567899999997543 32 122233334445556666 6789999999999999999988 4455555455
Q ss_pred cccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEee--ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003327 601 SIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLH--ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 601 ~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~--~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.......+.+++ ..++.++.+|.|..||+.+ ++.+..+ ........+..+.+++..+++++.++.|.+|| .+++
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 555556666655 5888999999999999998 8877776 44444456677777888999999999999999 8888
Q ss_pred EEEEe-ecCCc--eeecCcccccCCCe-EEEE---eeCCeEEEEeCCCCcE-EEEEe--cCCcccccccccccccccccc
Q 003327 677 IIWRC-RTGGP--IFAGPCTSFALPSQ-VLIC---SRNGSIYSFEQESGNL-LWEYS--VGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 677 ~~w~~-~~~~~--~~~~~~~~~~~~~~-i~~~---t~~g~l~~~d~~tG~~-~w~~~--~~~~~~~~~~~~~~~~~~~~~ 746 (829)
.+..+ ..... +.. +....++. ++++ +.++.|..||..+++. ..... ....+....+.
T Consensus 210 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---------- 276 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVH---AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD---------- 276 (402)
T ss_dssp EEEEEECSSCSSSCCE---EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE----------
T ss_pred eeeeeccCCCCCcceE---EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc----------
Confidence 87776 22211 111 11223455 4455 4789999999988764 22222 22222221111
Q ss_pred ccCCCcEEE-EEccCCcEEEEEeecC
Q 003327 747 CLSIDRLVC-ICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~-~~~~~G~l~~~d~~~~ 771 (829)
.++..++ +++.||.|.+||..++
T Consensus 277 --~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 277 --PDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp --TTTTEEEEEETTCSCEEEEEECSS
T ss_pred --CCCCEEEEEEcCCCeEEEEEecCC
Confidence 2256665 4667999999999865
No 175
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.9e-11 Score=127.74 Aligned_cols=264 Identities=8% Similarity=0.012 Sum_probs=165.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE---------cCCCcEEEEEe
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD---------YLTGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d---------~~tG~~~w~~~ 555 (829)
++..++.|+.||.|+.||..+|+.+..+.... ..+..+.++ ++.++.|+.+..|+ ..+++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~--v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPN--PRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEEC--CCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecCC--ceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 45678899999999999999999887765221 112222222 66666666666664 44666555444
Q ss_pred cC-Ceeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 556 TC-GEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~-~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.. ........+.+ ++..+++++.|+.++.||..+++........ ........+.+++..+++|+.+|.|..||..+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 32 12233344555 6678888999999999999999986655332 22355566777778888899999999999987
Q ss_pred CCceEE-Eeecc-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec---CCceeecCcccccCC-CeEEEE
Q 003327 632 LPFHTL-WLHEL-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT---GGPIFAGPCTSFALP-SQVLIC 704 (829)
Q Consensus 632 ~~g~~~-w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~---~~~~~~~~~~~~~~~-~~i~~~ 704 (829)
++.. ..+.. +.....+..+.+++..++.++ ++.|..|| .+++....+.. ........++....+ ..+.++
T Consensus 202 --~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 202 --PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp --TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred --CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 6654 44444 344456677777888888888 56999999 77765433321 000011011222333 456666
Q ss_pred ee-CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 705 SR-NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 705 t~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+. ++.+..|+..++...|... ++....+... ......+++++.+|.+.++-.
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTKD---EESALCLQSD---------TADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEEE---EEEECCC-------------CCCCEEEEEEETTEEEEEEE
T ss_pred cCCCCcEEEEEEcccccceEec---CceeEecCcc---------ccccceeEEEecCCceEEEEe
Confidence 66 8999999988877778751 1111111110 012557788888888877643
No 176
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.40 E-value=6.5e-11 Score=124.86 Aligned_cols=199 Identities=10% Similarity=-0.009 Sum_probs=131.9
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcC
Q 003327 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~ 588 (829)
+.....+..+++++..+++++.|+.|+.||..++. ....+..+........+.+ ++..+++++.|+.|+.||..
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 33344567778888899999999999999998874 3344444444444445554 36789999999999999998
Q ss_pred CC---------eEEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeecc-------------CC
Q 003327 589 NY---------RCVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHEL-------------EV 644 (829)
Q Consensus 589 tg---------~~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~-------------~~ 644 (829)
++ +.+..+..+........+.++ +..+++++.+|.|..||+.+ ++.+..... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE--PSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS--TTCTTCCEEEEEEESCSCCCSSCS
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC--hHHhccccccccccccccccCCcc
Confidence 87 556666555555556666666 67899999999999999886 443222111 11
Q ss_pred cceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEE--EEeecC-CceeecCcccccCC-----CeEEEEeeCCeEEE
Q 003327 645 PAFASLCITSA---NRHVICCLVDGHVVALD-SSGSII--WRCRTG-GPIFAGPCTSFALP-----SQVLICSRNGSIYS 712 (829)
Q Consensus 645 ~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~--w~~~~~-~~~~~~~~~~~~~~-----~~i~~~t~~g~l~~ 712 (829)
.......+.++ +..+++++.++.+..++ .+++.. ..+... ..+.... ...+ ..++.++.||.|..
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS---WAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE---ECCCSSCSSEEEEEEETTSCEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE---ECCCCCCcceEEEEEcCCCeEEE
Confidence 11223334443 77888888888886666 666652 232221 2232222 2223 36888899999999
Q ss_pred EeCCCC
Q 003327 713 FEQESG 718 (829)
Q Consensus 713 ~d~~tG 718 (829)
||..++
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 998775
No 177
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.40 E-value=2.7e-10 Score=119.51 Aligned_cols=275 Identities=10% Similarity=0.050 Sum_probs=169.8
Q ss_pred eEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeE-EEeecc
Q 003327 522 AAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRC-VYKLPC 598 (829)
Q Consensus 522 ~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~-~w~~~~ 598 (829)
+++..+.+.+|+.+ .++.|+.||..+|+.+.....+.... ...+.+++..+|+++. ++.|+.||..+++. ......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 34445556666654 57899999999999988877655444 6667777777887765 78999999999987 655555
Q ss_pred CCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-Ce-EEEEc-
Q 003327 599 GGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GH-VVALD- 672 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~-i~~~d- 672 (829)
+......+.+++++..+|+...++ .|..||.++ ++.+........ .....+.++++.+|++..+ +. +..|+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 544444367777778888555443 899999987 777766554332 2566777777778877654 67 88887
Q ss_pred -CCCCEEEE----eecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCCCCcE---EEEEecCCcccccccccccccc
Q 003327 673 -SSGSIIWR----CRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQESGNL---LWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 673 -~~g~~~w~----~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
.+|.+... ...+..... +....++ .+|+++ .++.|+.||..+++. +..+..+.......+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~------- 228 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFN---ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV------- 228 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEE---EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEE-------
T ss_pred CCCCcEeecCCccccCCCCccc---eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEE-------
Confidence 44544221 111111111 1223344 477776 478899999999998 666654432222111
Q ss_pred ccccccCCCcEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeec----cCCc-ccc--cceE--ECCEEEEeee
Q 003327 743 KLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGD-IFS--SPVM--IGGRVFVGCR 812 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~--~~~~--~~~~l~vg~~ 812 (829)
.+++.++|+++. ++.|++||..++... ....+. .... ... ...+ ++..||+++.
T Consensus 229 -----spdg~~l~v~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 229 -----SRDGSTVYVLTESTVDVFNFNQLSGTLS-----------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp -----CTTSSEEEEECSSEEEEEEEETTTTEEE-----------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred -----CCCCCEEEEEEcCCCEEEEEECCCCcee-----------eecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence 223677777764 667999998765211 011111 1111 111 1122 3567888776
Q ss_pred -CCeEEEEecccccc
Q 003327 813 -DDYIYCIALETQHL 826 (829)
Q Consensus 813 -~g~l~~~d~~tg~~ 826 (829)
++.|..||..+..+
T Consensus 293 ~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 293 ISRELKVFTISGKVV 307 (331)
T ss_dssp TTTEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCcc
Confidence 45899999876553
No 178
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=2.5e-10 Score=119.11 Aligned_cols=269 Identities=10% Similarity=0.069 Sum_probs=177.6
Q ss_pred CCeEEEEecC-----CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003327 485 SDIYLFVGSH-----SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~-----~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+..++|+... ++.|+.+|..|++.+.+++.+... ...++++++.+|+.+. ++.|..||..|++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 5778999876 578999999999999998877665 3788999999999863 5679999999999
Q ss_pred EEEEEecCC-------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003327 550 IYWTFQTCG-------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 550 ~~w~~~~~~-------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
++.++..+. .-.....+++++..+|++.. ++.|..+|.++++.+.++...+.. .........++..+.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~---~~~P~g~~~~~~~~~ 197 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY---HIFPTAPDTFFMHCR 197 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE---EEEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc---eeecCCCceeEEECC
Confidence 998877643 11223456778889999864 578999999999999888765431 112222355667777
Q ss_pred CCeEEEEEccCCCceEEEeec----c-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--E--EEe-ec----CC
Q 003327 621 SGRLTAISVKALPFHTLWLHE----L-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--I--WRC-RT----GG 685 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~----~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~--w~~-~~----~~ 685 (829)
+|.+..++..+ .|+..-... . ..+.+..+.+...++.+++.+.+|.++++| .++.. . |.. .. .+
T Consensus 198 DG~~~~v~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 198 DGSLAKVAFGT-EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp TSCEEEEECCS-SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEECCC-CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 88888887754 133321111 1 122333344444466776677789999999 55432 2 221 00 00
Q ss_pred c-eee-cCcccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003327 686 P-IFA-GPCTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 686 ~-~~~-~~~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
- .-. .+.-.....+.+|+..+ .+.|+.+|.+|++.+-++..+.......+..+ +.
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D------------~~~ 344 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD------------EKP 344 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSS------------SSC
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCC------------CCe
Confidence 0 000 01111224678999864 24799999999999988777654433332222 43
Q ss_pred EEEEEcc-CCcEEEEEeecC
Q 003327 753 LVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~~-~G~l~~~d~~~~ 771 (829)
++|+.+. ++.|.++|..++
T Consensus 345 ~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEcCCCCeEEEEECCCC
Confidence 6777654 788999999876
No 179
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.40 E-value=9.1e-11 Score=124.42 Aligned_cols=294 Identities=10% Similarity=0.038 Sum_probs=168.1
Q ss_pred CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE-EEeccCCeE
Q 003327 504 KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI-WCGSHDHNL 582 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i-~~gs~~g~l 582 (829)
.+.+.+.....+.....+..+++++..+.+|+.+ ++..||..+++.......++ +... .+....+.+ ++++.++.|
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRH-LSKV-RMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSC-CCEE-EECTTSSEEEEECSSTTEE
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCC-eEEE-EEcCCCCEEEEEECCccEE
Confidence 3455544444444445678888998888888755 58899999988877655443 2222 222334444 667888999
Q ss_pred EEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEE
Q 003327 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVIC 661 (829)
Q Consensus 583 ~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~ 661 (829)
..||..+|+++..+.....+ ....+.. +.++++. ++.++.||..+ + +.+..+.. ......+.. ..+.+
T Consensus 84 ~iWd~~~~~~~~~~~~~~~v-~~v~~~~--~~~~~~~-~~~i~i~d~~~--~~~~~~~~~~---~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIKVDAPV-KDLFLSR--EFIVVSY-GDVISVFKFGN--PWKRITDDIR---FGGVCEFSN--GLLVY 152 (355)
T ss_dssp EEEETTTTEEEEEEECSSCE-EEEEECS--SEEEEEE-TTEEEEEESST--TCCBSSCCEE---EEEEEEEET--TEEEE
T ss_pred EEEECCCCcEEEEEECCCce-EEEEEcC--CEEEEEE-cCEEEEEECCC--CceeeEEecc---CCceEEEEc--cEEEE
Confidence 99999999998887755433 2333433 5666654 67899999887 5 44443332 111222222 55655
Q ss_pred --EeeCCeEEEEc-CCCCE----------------EEEeecC-CceeecCcccccCCCeEEEEeeCCe-EEEEeCCCCcE
Q 003327 662 --CLVDGHVVALD-SSGSI----------------IWRCRTG-GPIFAGPCTSFALPSQVLICSRNGS-IYSFEQESGNL 720 (829)
Q Consensus 662 --~~~~g~i~~~d-~~g~~----------------~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~-l~~~d~~tG~~ 720 (829)
|+.+|.|..|| .+++. +..+... ..+....+.+ .+..+..++.||. |..||..+|+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~--~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR--KSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT--TSSEEEEEETTCSEEEEEETTTCCE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC--CCCEEEEEeCCCCEEEEEECCCCcE
Confidence 46789999999 66541 2222221 2222222111 2346788899998 99999999999
Q ss_pred EEEEe---cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccc-------ccceeeeee
Q 003327 721 LWEYS---VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKD-------HMVQEFAKL 790 (829)
Q Consensus 721 ~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~ 790 (829)
+..+. ....+....+. +++.++++++.||.|.+||...+.......... ........+
T Consensus 231 ~~~~~~g~h~~~v~~~~~s------------~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWS------------TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEECTTCCSCEEEEEEC------------TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEcCCCCCcEEEEEEC------------CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 88877 33333332222 237889999999999999987653221100000 000000111
Q ss_pred ccCCcc---cccceE--ECCEEEEeeeCCeEEEEeccccc
Q 003327 791 ELQGDI---FSSPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 791 ~~~~~~---~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.++... ...... .+..|.+++.||.++.|+...++
T Consensus 299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 111110 011111 34588999999999999876644
No 180
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=111.96 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=61.2
Q ss_pred cccccHHHHHHHHHHhcccC-cceeccCCCccccCCChHHHHHHHHHc----C---CcchhhhcCCCHHHHHHHHHhh
Q 003327 284 ETKASDLLQVIRKAFGHALM-VEEVLHHDNFFTMGGNSIAAAHVAHNL----G---IDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l----~---~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+.+++|+.|+++|+++|+ .+.|++++|||++|||||+|++|+.+| + +++..+|++||+..||.+|...
T Consensus 20 t~~~~~~E~~La~iW~~vL~~~~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~ 97 (110)
T 2cq8_A 20 TEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRK 97 (110)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCSCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhCCCCCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 34556799999999999999 899999999999999999999998654 3 5566999999999999999754
No 181
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.39 E-value=4.2e-10 Score=125.99 Aligned_cols=273 Identities=12% Similarity=0.090 Sum_probs=181.3
Q ss_pred eeCCCeEEEEecCCCcEEEEEC--CCCcEEEEEEcCCceeeceEEee----CCcEEEEEEe-CCEEEEEEcCCCcEEEEE
Q 003327 482 LKDSDIYLFVGSHSHKFICADA--KRSSVLWEIKLEGRIECSAAVLA----DFSQVVVGCY-KGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~--~tg~~~w~~~~~~~~~~~~~~~~----~~~~v~vg~~-dg~l~~~d~~tG~~~w~~ 554 (829)
++.++.+||+++.++.|..||. .+++++.++..+... ....+++ +++.+|++++ ++.|..||..+++++.++
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p-~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc-ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 4557789999999999999999 899988877765443 4677888 8999999985 799999999999999887
Q ss_pred ecCCe-----------eeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEE--eeccCCcccccceeecCCCEEEEEec
Q 003327 555 QTCGE-----------VKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVY--KLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 555 ~~~~~-----------~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w--~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
...+. -.....++.++..+++ ...++.|..||..+++.+. .+.. +.......+++++.++|++..
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-APFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEG
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc-CcCccCceECCCCCEEEEEec
Confidence 65321 1223334444455444 5667899999998865433 3332 223334567776777887764
Q ss_pred -CCeEEEEEccCCCceEEEeeccCCcce--eeee-eeecCCEEEEEee--CCeEEEEc-CC-------CCEEEEeecCCc
Q 003327 621 -SGRLTAISVKALPFHTLWLHELEVPAF--ASLC-ITSANRHVICCLV--DGHVVALD-SS-------GSIIWRCRTGGP 686 (829)
Q Consensus 621 -~g~l~~~~~~~~~g~~~w~~~~~~~~~--~s~~-~~~~~~~l~~~~~--~g~i~~~d-~~-------g~~~w~~~~~~~ 686 (829)
++.|.+||.++ |+.+.......... .... ..++++.+|+.+. ++.|.+|| .+ ++.+-++...+.
T Consensus 344 ~~~~v~v~D~~t--g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 344 NSNKVAVIDSKD--RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp GGTEEEEEETTT--TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCCeEEEEECCC--CeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 78899999988 88877766432111 1112 2345577887653 68999999 66 677666665431
Q ss_pred -eeecCcccccCCCeEEEEe-------eCCeEEEEeCCCCcEEEE-EecC--------CccccccccccccccccccccC
Q 003327 687 -IFAGPCTSFALPSQVLICS-------RNGSIYSFEQESGNLLWE-YSVG--------DPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~~~t-------~~g~l~~~d~~tG~~~w~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
.....+ .-....||+++ .++.|..||.++++...+ +... ......+. ...
T Consensus 422 ~~~~v~~--~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~ 488 (543)
T 1nir_A 422 GSLFIKT--HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-----------YNK 488 (543)
T ss_dssp CCCCEEC--CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE-----------ECS
T ss_pred CceEEEc--CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc-----------CCC
Confidence 111111 11345799987 267899999999987633 2211 11111111 123
Q ss_pred CCcEEEEEc-----cCCcEEEEEeecC
Q 003327 750 IDRLVCICT-----SSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~-----~~G~l~~~d~~~~ 771 (829)
++..+|++. .++.|.+||.+++
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 488899874 3689999999876
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=1.7e-09 Score=120.63 Aligned_cols=323 Identities=11% Similarity=0.086 Sum_probs=199.8
Q ss_pred CeEEEEe-cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeee
Q 003327 486 DIYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKC 562 (829)
Q Consensus 486 ~~~l~ig-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~ 562 (829)
++.+|+. ..++.|..+|..|++++.++..+.... ...+++++.++|+++.++.|+.||.. +++++.++..+....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~- 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR- 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-
Confidence 3444444 457899999999999999888776544 57788999999999999999999985 899988887765543
Q ss_pred eeeee----cCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcc-----------cccceeecCCCEEEEE-ecCCeEE
Q 003327 563 QPVVD----APRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSI-----------FGSPAIDEVHDVLYVA-STSGRLT 625 (829)
Q Consensus 563 ~~~~~----~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~-----------~~~~~~~~~~~~l~v~-t~~g~l~ 625 (829)
...++ ++++.+|++.+ .+.+..+|..+.+++..+...+.. .+.+..+.++..+++. ...|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 33455 36788888765 488999999999999887654311 1122223323333333 3457788
Q ss_pred EEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeec-CCcee--ecCcccccCCCe
Q 003327 626 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRT-GGPIF--AGPCTSFALPSQ 700 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~-~~~~~--~~~~~~~~~~~~ 700 (829)
.+|..+.....+...... .......+.+++.+++++. .++.|.++| .+++++..... +.... ..........+.
T Consensus 324 ~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp EEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred EEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 888665211122222221 2223456677788888876 468899999 89998888776 32111 011111112467
Q ss_pred EEEEee--CCeEEEEeCCCC-------cEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-------CCcEE
Q 003327 701 VLICSR--NGSIYSFEQESG-------NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-------SGSIH 764 (829)
Q Consensus 701 i~~~t~--~g~l~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~G~l~ 764 (829)
+|+.++ ++.|..+|..++ +.+.+......- +.++. ..+++.++|+.+. ...|.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~---------~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIK---------THPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEE---------CCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEE---------eCCCCCeEEEecCCCCCcccCceEE
Confidence 888764 578999998873 344444443211 11110 1233778999874 35899
Q ss_pred EEEeecCcc-ccccccccccceeeeee---cc--CCcccccceE--ECCEEEEeee-----CCeEEEEeccccccc
Q 003327 765 ILRVNLDVT-GKENQSKDHMVQEFAKL---EL--QGDIFSSPVM--IGGRVFVGCR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 765 ~~d~~~~~~-~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~--~~~~l~vg~~-----~g~l~~~d~~tg~~~ 827 (829)
+||.++... +.. ...+.+... .+ .+.....+.+ ++..+|+..+ ++.|..+|.+|++++
T Consensus 472 v~d~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 472 VFDIKAMTGDGSD-----PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp EEEGGGCCCSSSC-----CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEECCcccccccC-----CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 999875410 000 000111000 01 1222222333 4679999865 689999999998864
No 183
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=8.7e-11 Score=125.71 Aligned_cols=234 Identities=6% Similarity=-0.029 Sum_probs=157.6
Q ss_pred CCCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCc--EEEEEecC
Q 003327 484 DSDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGD--IYWTFQTC 557 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~ 557 (829)
.++..|++|+.+|.|..||.. +++....+..+.....+..+..+ +..+++++.|+.|+.||..+++ .+..+..+
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 100 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 100 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence 356789999999999999987 55555556555555556667655 7899999999999999999997 55555544
Q ss_pred CeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeec-------------CCCEEEEEec
Q 003327 558 GEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDE-------------VHDVLYVAST 620 (829)
Q Consensus 558 ~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~-------------~~~~l~v~t~ 620 (829)
........+.++ +..+++++.++.++.||..+++. ......+......+.+.+ ++..+++++.
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 444455556655 67899999999999999988732 223333333334444444 4688999999
Q ss_pred CCeEEEEEccCCCc--eEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEee------cCCcee
Q 003327 621 SGRLTAISVKALPF--HTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCR------TGGPIF 688 (829)
Q Consensus 621 ~g~l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~------~~~~~~ 688 (829)
+|.|+.||..+... ..............+..+.++ +..+++++.+|.|.+|| .++...+... ....+.
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 260 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 260 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEE
Confidence 99999999886211 122233333344456677777 67888899999999999 7664222211 112222
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003327 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
...+ ...+..+++++.||.|+.|+..++.
T Consensus 261 ~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 261 RASW--SLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEE--CSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEE--cCCCCEEEEecCCCcEEEEeCCCCC
Confidence 2211 1123468888899999999987543
No 184
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.37 E-value=1.7e-10 Score=121.61 Aligned_cols=190 Identities=7% Similarity=-0.100 Sum_probs=130.4
Q ss_pred CCCeEEEEecCCCcEEEEECCCCc----EEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCC---------
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSS----VLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTG--------- 548 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG--------- 548 (829)
.++..|++|+.||.|..||..++. ....+..+.....+..+.+ ++..+++++.|+.|..||..++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 356789999999999999998774 3333444555455667766 5789999999999999999887
Q ss_pred cEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeecc-------------CCcccccceeecC--
Q 003327 549 DIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLPC-------------GGSIFGSPAIDEV-- 611 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-------------~~~~~~~~~~~~~-- 611 (829)
+.+..+..+........+.++ +..+++++.|+.|+.||..+++.+..+.. .........+.++
T Consensus 101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 180 (351)
T 3f3f_A 101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF 180 (351)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS
T ss_pred ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC
Confidence 445555544444455556665 77899999999999999988765432221 1111222223332
Q ss_pred -CCEEEEEecCCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecC----CEEEEEeeCCeEEEEc-CCC
Q 003327 612 -HDVLYVASTSGRLTAISVKALPFHT--LWLHELEVPAFASLCITSAN----RHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 612 -~~~l~v~t~~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~----~~l~~~~~~g~i~~~d-~~g 675 (829)
+..+++++.++.+..++... ++. +...........+..+.+++ ..++.++.+|.|..|| .++
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 181 SPEKLAVSALEQAIIYQRGKD--GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SCCEEEEEETTEEEEEEECTT--SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCcEEEEecCCCcEEEEccCC--CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 57888999998887777665 443 33333333444566666666 6788899999999999 654
No 185
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.36 E-value=3.2e-10 Score=119.83 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=158.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCe----
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE---- 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~---- 559 (829)
+..+++++.++.|+.||..+++.++.+..+.. ......++++++.+|+.+ .++.|+.||..+|+.++.+..+..
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 34455566789999999999999988876651 123567788888887765 478999999999999988765431
Q ss_pred --eeeeeeeecCCCEEEEeccC------------CeEEEEEcCCCeEE---EeeccCCcccccceeecCCCEEEEEecCC
Q 003327 560 --VKCQPVVDAPRQLIWCGSHD------------HNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 560 --~~~~~~~~~~~~~i~~gs~~------------g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
......+++++..+|+++.+ +.|+.||..+++.. ........ .....+++++. +|+++ +
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-l~~~~--~ 166 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ-VYLMRAADDGS-LYVAG--P 166 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS-CCCEEECTTSC-EEEES--S
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc-ccceeECCCCc-EEEcc--C
Confidence 12334566677889988754 89999999885432 22222222 23344666555 88754 3
Q ss_pred eEEEEEccCCCceEEEeeccCCcc---e---------------------eeeeeeecCCEE-EEEeeCCeEEEEc-CCCC
Q 003327 623 RLTAISVKALPFHTLWLHELEVPA---F---------------------ASLCITSANRHV-ICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~---~---------------------~s~~~~~~~~~l-~~~~~~g~i~~~d-~~g~ 676 (829)
.++.||+.+ ++........... . ....+..++... ........+..++ .+++
T Consensus 167 ~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
T 1jmx_B 167 DIYKMDVKT--GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 244 (349)
T ss_dssp SEEEECTTT--CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred cEEEEeCCC--CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence 499999887 7777665433200 0 000010000000 0000111233356 5555
Q ss_pred EE-EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE
Q 003327 677 II-WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 677 ~~-w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
+. |.....+.......+....+..+|++ ++.|+.||..+++.+..+..+.......+ ..+++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~ 310 (349)
T 1jmx_B 245 THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAF------------DKKGDKLY 310 (349)
T ss_dssp EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEE------------CSSSSCEE
T ss_pred EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEE------------CCCCCEEE
Confidence 43 22221111111111111024467776 78999999999998877765543322111 12367888
Q ss_pred EEccCCcEEEEEeecC
Q 003327 756 ICTSSGSIHILRVNLD 771 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~ 771 (829)
+++.++.|.+||.+++
T Consensus 311 ~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EESBSSEEEEEETTTT
T ss_pred EecCCCeEEEEecccc
Confidence 8888999999998765
No 186
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.5e-10 Score=133.11 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=194.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---------
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--------- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--------- 556 (829)
+..|+.++.|+.|..||..+++.+..+..+.. ..+..+++++..+++|+.||.|+.||..+++.. .+..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~-V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFF 146 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECSSC-EEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTC
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCCCC-EEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccc
Confidence 45799999999999999999998877764443 456778889999999999999999999988764 2211
Q ss_pred ---CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCE
Q 003327 557 ---CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDV 614 (829)
Q Consensus 557 ---~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~ 614 (829)
+.....+..+.+. .+.+++|+.++.+ .||.++++++..+..+ .....+..+.+++..
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 1122233445543 3678899999999 9999999988776543 123445567777788
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeecc-----C-------------Ccceeeeeeee----cC-CEEEEEeeC-----C
Q 003327 615 LYVASTSGRLTAISVKALPFHTLWLHEL-----E-------------VPAFASLCITS----AN-RHVICCLVD-----G 666 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~-----~-------------~~~~~s~~~~~----~~-~~l~~~~~~-----g 666 (829)
+..++.||.|..||.++ |+.+..... . .....+..... ++ ..++.|+.+ .
T Consensus 226 lasgs~Dg~i~lWd~~~--g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANS--GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp EEEEETTCCEEEEETTT--CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred EEEEECCCeEEEEECCC--CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 99999999999999987 776543111 1 11122333332 12 234444443 2
Q ss_pred eEEEEc-C-C-----------------C--CEEEEeecCCceeecCccc-------c-cCCCeEEEEeeCCeEEEEeCCC
Q 003327 667 HVVALD-S-S-----------------G--SIIWRCRTGGPIFAGPCTS-------F-ALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 667 ~i~~~d-~-~-----------------g--~~~w~~~~~~~~~~~~~~~-------~-~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.+..++ . + + ...+.......+....+.. . .....+++++.+|.|+.||..+
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 565555 1 1 1 1112111122221111000 0 1123678888899999999888
Q ss_pred CcEEEEE-------e-cCCccccccccc---------------cccccccc-------cccCCCcEEEEEccCCcEEEEE
Q 003327 718 GNLLWEY-------S-VGDPITASAYID---------------EHLQLKLE-------SCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 718 G~~~w~~-------~-~~~~~~~~~~~~---------------~~~~~~~~-------~~~~~~~~l~~~~~~G~l~~~d 767 (829)
|...... . ....+....+.. ....+... ....++..++.|+.||.|.+||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 8543220 0 001111000000 00000110 1123577999999999999999
Q ss_pred eecCccccccccccccceeeee-ec-----cCCcccccceE--ECCEEEEeeeCCeEEEEeccccc
Q 003327 768 VNLDVTGKENQSKDHMVQEFAK-LE-----LQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
..++..... ..+.. .. .+...+.+..+ ++..|.+|+.||.|..||..+++
T Consensus 464 ~~~g~~~~~--------~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 464 ASHGDIQDN--------ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SSCCTTTTT--------BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCCccccCC--------ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 987632100 00100 00 11112222223 36789999999999999998874
No 187
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=99.34 E-value=8.7e-13 Score=108.17 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 285 TKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+.+++++.|+++|+++|+.+.++.+++||++|||||+|++|+.+| .+++..+|++||+..|+.+|.+..
T Consensus 12 ~~~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~ 87 (93)
T 4i4d_A 12 TRRRALERDIAAIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATL 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999999999998765 488999999999999999998764
No 188
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.34 E-value=2.6e-10 Score=117.56 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=147.9
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCC--CcEEEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCe--
Q 003327 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLT--GDIYWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR-- 591 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~-- 591 (829)
...+..++.++..+++|+.|+.|..||..+ ++.+.++..+........+.. .+..|++++.|+.++.||..+++
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 344667888889999999999999999864 355556655544444444432 25789999999999999998874
Q ss_pred EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-------------C
Q 003327 592 CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-------------N 656 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-------------~ 656 (829)
.+..+..+.....+..+.++ +..+++++.+|.+..||..+.................+..+.++ +
T Consensus 91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 23333333333444455443 56899999999999999876211111112222222233333332 4
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEE----EeecC-CceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEec---
Q 003327 657 RHVICCLVDGHVVALD-SSGSIIW----RCRTG-GPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSV--- 726 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w----~~~~~-~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~--- 726 (829)
..++.++.++.|..|| .+++..+ .+... ..+....+.+.. .+..+..++.|+.|..||..++...|....
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~ 250 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE 250 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec
Confidence 5788999999999999 7666322 22221 123222211111 124577888999999999877543332211
Q ss_pred ---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 727 ---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 727 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
...+... +..+++..+++++.||.|.+|+..
T Consensus 251 ~~~~~~v~~~------------~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 251 EKFPDVLWRA------------SWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCSSCEEEE------------EECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccCCCcEEEE------------EECCCCCEEEEEcCCCcEEEEEEC
Confidence 1111111 112347889999999999999876
No 189
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=99.33 E-value=1.2e-12 Score=106.51 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=63.0
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+.+++++.|+++|+++|+.+.++++++||++|||||.|++|+.+| .+++..+|++||+.+||.++.+.
T Consensus 9 ~~p~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~ 84 (91)
T 1dny_A 9 VAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR 84 (91)
T ss_dssp CCCSSHHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999998765 47889999999999999998764
No 190
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.8e-10 Score=121.66 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=142.7
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC---------CCeEEEee
Q 003327 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR---------NYRCVYKL 596 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~---------tg~~~w~~ 596 (829)
.++..+++|+.||.|+.||..+|+.+..+... .+. ...+.+ . +++++.|+.+..|+.. +++.+..+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~-~v~-~~~~~~--~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTP-NPR-TGGEHP--A-IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEE-CCC-TTCCCC--S-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecC-Cce-eeeeCC--c-eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 45568999999999999999999988876521 111 111222 1 6777777777777654 45444444
Q ss_pred ccC-Ccccccceeec--CCCEEEEEecCCeEEEEEccCCCceEEEeeccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 597 PCG-GSIFGSPAIDE--VHDVLYVASTSGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 597 ~~~-~~~~~~~~~~~--~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
... ........+.+ ++..++.++.+|.+..||+.+ ++........ .....+..+.+++..+++|+.+|.|.+||
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 322 12233444555 567888899999999999987 7665444222 22345667777888899999999999999
Q ss_pred -CCCCEE-EEeec--CCceeecCcccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEec---C-Ccccc-cccccccccc
Q 003327 673 -SSGSII-WRCRT--GGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSV---G-DPITA-SAYIDEHLQL 742 (829)
Q Consensus 673 -~~g~~~-w~~~~--~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~---~-~~~~~-~~~~~~~~~~ 742 (829)
.+++.+ ..+.. ..++.... ...++ .+..++ ++.|..||..+++....+.. + ..+.. ..
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~---fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------- 266 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVK---FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY-------- 266 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEE---ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE--------
T ss_pred CCCCCCCccEEeccCCCCEEEEE---EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE--------
Confidence 888766 55544 33333322 22244 455556 66999999998876432221 0 00000 01
Q ss_pred ccccccCCCcEEEEEcc-CCcEEEEEeecC
Q 003327 743 KLESCLSIDRLVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~ 771 (829)
...+++.++++++. ++.+.+|+...+
T Consensus 267 ---~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 267 ---DIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ---EECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ---EECCCCCEEEEecCCCCcEEEEEEccc
Confidence 11234778888777 899999998654
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=6.4e-10 Score=116.07 Aligned_cols=283 Identities=12% Similarity=0.048 Sum_probs=176.0
Q ss_pred eEEeeCCcEEEEEEe-----CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEEE
Q 003327 522 AAVLADFSQVVVGCY-----KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYALD 586 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~-----dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~d 586 (829)
....+++..+|+... ++.|+.+|..+++++.++..+... . ..+++++..+|+++ .++.|..||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445578889999976 578999999999999999877655 3 67788888999976 246799999
Q ss_pred cCCCeEEEeeccCC-------cccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003327 587 FRNYRCVYKLPCGG-------SIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 587 ~~tg~~~w~~~~~~-------~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
..+++.+..+..+. ..-....+++++.++|++.. ++.|.++|..+ ++.+-++...... ........
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t--~~vv~tI~v~g~~---~~~P~g~~ 190 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCY---HIFPTAPD 190 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEE---EEEEEETT
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC--CcEEEEEECCCcc---eeecCCCc
Confidence 99999988876542 12234567777899999874 57899999988 8887777554321 11112344
Q ss_pred EEEEEeeCCeEEEEc-C-CCCEEEEeecC-----CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE--EEecCC
Q 003327 658 HVICCLVDGHVVALD-S-SGSIIWRCRTG-----GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW--EYSVGD 728 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~-~g~~~w~~~~~-----~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w--~~~~~~ 728 (829)
.++..+.+|.+..++ . +|+..-..... .+++..+. ....++.+++.+.+|.++.+|..++.... ....-.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA-YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE-EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce-eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 566677788888888 4 36653211100 11111110 01246777778889999999987765321 111000
Q ss_pred c-cccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCccc
Q 003327 729 P-ITASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF 797 (829)
Q Consensus 729 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (829)
. .....+....... ......++.+|+... ...|+++|..++ ++.....+.....
T Consensus 270 ~~~~~~g~~p~g~q~--~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-------------kv~~~i~vg~~~~ 334 (386)
T 3sjl_D 270 EAERADGWRPGGWQQ--VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-------------ERLAKFEMGHEID 334 (386)
T ss_dssp HHHHHTTEEECSSSC--EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEEEEEEEC
T ss_pred cccccccccCCCcce--eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-------------eEEEEEECCCCcc
Confidence 0 0000000000000 001123788888753 246999998866 4444444443332
Q ss_pred ccceEECC--EEEEeee-CCeEEEEeccccccc
Q 003327 798 SSPVMIGG--RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 798 ~~~~~~~~--~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
+-.+..++ .||+.+. ++.|..+|..++++.
T Consensus 335 ~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 335 SINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 22222333 5777665 789999999999864
No 192
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.31 E-value=8.2e-10 Score=117.03 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=170.2
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEE-EEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQV-VVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v-~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
++.++..+.+|+.++ +..||..+++.......++ + ....+..+.+.+ ++++.|+.|..||..+|+.+..+.....+
T Consensus 27 fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v 103 (355)
T 3vu4_A 27 FNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH-L-SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV 103 (355)
T ss_dssp ECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC-C-CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred ECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC-e-EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence 344566777787765 7899999888776655443 2 233344444555 56777889999999999999888766655
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEE--EecCCeEEEEEccCCCce--
Q 003327 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYV--ASTSGRLTAISVKALPFH-- 635 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v--~t~~g~l~~~~~~~~~g~-- 635 (829)
... .+. ...++++ .++.++.||..++ +.+..+.. ......+.. ..+.+ ++.+|.|..||..+ ++
T Consensus 104 ~~v-~~~--~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~--~~~~ 172 (355)
T 3vu4_A 104 KDL-FLS--REFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS--SGSA 172 (355)
T ss_dssp EEE-EEC--SSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------
T ss_pred EEE-EEc--CCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC--CCcc
Confidence 433 233 2445554 4778999999987 55544433 112223333 55555 47789999999886 43
Q ss_pred -------------E-EEeeccCCcceeeeeeeecCCEEEEEeeCCe-EEEEc-CCCCEEEEee---cCCceeecCccccc
Q 003327 636 -------------T-LWLHELEVPAFASLCITSANRHVICCLVDGH-VVALD-SSGSIIWRCR---TGGPIFAGPCTSFA 696 (829)
Q Consensus 636 -------------~-~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~-i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~ 696 (829)
+ +..+..+.....+..+.+++..++.++.++. +..|| .+|+.+..+. ....+....+.+
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-- 250 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-- 250 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT--
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC--
Confidence 1 3333444444567778888899999999998 99999 8999988776 233343332211
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc----ccccccccccccc--------ccccccCCCcEEEEEccCCcEE
Q 003327 697 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP----ITASAYIDEHLQL--------KLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 697 ~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
.+..+..++.|+.|..||..++........... ............+ ..-+...++..+++++.||.++
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 244678888999999999877643211111100 0000000000000 0011234477899999999999
Q ss_pred EEEeecC
Q 003327 765 ILRVNLD 771 (829)
Q Consensus 765 ~~d~~~~ 771 (829)
.|+...+
T Consensus 331 ~~~~~~~ 337 (355)
T 3vu4_A 331 TFKVVFD 337 (355)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9988754
No 193
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.6e-11 Score=139.50 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=158.6
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCe-
Q 003327 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYR- 591 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~- 591 (829)
....+..+++++..+++|+.||.|..||.. +++.+..+..+........+..+ +..+++|+.||.|+.||..+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 334456677788889999999999999987 45566666555444445555544 6789999999999999999987
Q ss_pred -EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-------------c
Q 003327 592 -CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-------------A 655 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-------------~ 655 (829)
.......+........+.++ +..+++++.+|.+..||..+.................+..+.+ +
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 55555545555556666665 6889999999999999988721122222222233334444544 4
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEE----eec-CCceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEec--
Q 003327 656 NRHVICCLVDGHVVALD-SSGSIIWR----CRT-GGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSV-- 726 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~----~~~-~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-- 726 (829)
+..+++++.+|.|..|| .++...+. +.. ...+....+.+... +..++.++.||.|..||..+++..+....
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 249 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec
Confidence 67899999999999999 66643322 221 22232222111100 34677888999999999988753322111
Q ss_pred ----CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 727 ----GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 727 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
...+.... ..+++..+++++.||.|++||...+
T Consensus 250 ~~~~~~~v~~l~------------~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 250 EEKFPDVLWRAS------------WSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSCCSSCCCCEE------------ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCCCCceEEEE------------EcCCCCEEEEEcCCCEEEEEecCCC
Confidence 11111111 1234788999999999999998753
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.29 E-value=3.1e-09 Score=109.41 Aligned_cols=268 Identities=11% Similarity=0.054 Sum_probs=147.5
Q ss_pred ceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEE-ecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEE-Eee
Q 003327 521 SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTF-QTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCV-YKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~-w~~ 596 (829)
+..+..+ +.+|+++. ++.|+.||.. |+..... ...........++ .++.+|+++. ++.|+.+|.+ |+.. +..
T Consensus 19 ~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 94 (299)
T 2z2n_A 19 GITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEYTL 94 (299)
T ss_dssp EEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred ceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEEeC
Confidence 3444444 56888876 6889999987 7665322 1122222333343 4567888765 6789999976 5432 222
Q ss_pred ccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcC
Q 003327 597 PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLV-DGHVVALDS 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~ 673 (829)
.........++++. ++.+|+++. ++.++.+|. + |+.... ............+. .++.+|+++. ++.|+.+|.
T Consensus 95 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~--g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 95 PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-D--GKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T--CCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-C--CCEEEecCCCCCCCCceEEEc-CCCCEEEEeCCCCEEEEEcC
Confidence 21222223344554 567888764 678999998 4 544322 11111112233333 3567888765 578999997
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCcc--ccccccccccccccccccCC
Q 003327 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPI--TASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 750 (829)
+|+.... ...........+..+.++.+|+++. ++.|+.+|. +|++.. +...... ......+ .
T Consensus 170 ~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~------------~ 234 (299)
T 2z2n_A 170 SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAG------------A 234 (299)
T ss_dssp TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEEC------------S
T ss_pred CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEEC------------C
Confidence 6665432 1111111111123445678999875 678999998 787643 2222111 1111111 1
Q ss_pred CcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003327 751 DRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 751 ~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++.+|+++ .++.|+++|.+ +. +..+..+ ........+.++.||+++..+.|+++++++++++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~~-g~--------------~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTSN-NI--------------IEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp TTCEEEEETTTTEEEEEETT-TE--------------EEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEEEEC-----
T ss_pred CCCEEEeccCCceEEEECCC-Cc--------------eEEEeCCCCCCccceEEecCCCEEEEecCCcEEEEEcCcccCC
Confidence 56688887 56789999873 21 1112111 1112222226789999988889999999988764
No 195
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=2.3e-09 Score=114.05 Aligned_cols=268 Identities=10% Similarity=0.054 Sum_probs=178.5
Q ss_pred CCeEEEEecCC-----CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003327 485 SDIYLFVGSHS-----HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+..++|+.... +.|..+|+.|++++++++.+... ...++++++.+|++.. ++.|..+|..+++
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 45678887653 68999999999999999887664 6788999999999873 5689999999999
Q ss_pred EEEEEecC-------CeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003327 550 IYWTFQTC-------GEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 550 ~~w~~~~~-------~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
++.++..+ +.......++++++.+|++.. ++.|..+|.++++.+.++..++... ........++..+.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~---~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYH---IFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCcee---eccCCCcEEEEEcC
Confidence 99887764 111233456778889999864 5789999999999998887654311 11111234455567
Q ss_pred CCeEEEEEccCCCceEEEee----ccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecCCce---
Q 003327 621 SGRLTAISVKALPFHTLWLH----ELE-VPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTGGPI--- 687 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~----~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~~~~--- 687 (829)
+|.+..++..+ ++..+.. ... .+.+....+..+++.+|+.+..+.++++| .++... |.......+
T Consensus 238 dG~~~~V~~~~--~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 238 DGSLARVDFAD--GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp TSSEEEEECCT--TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred CCCEEEEECCC--CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 88888888754 6655432 111 22223344566778888888889999999 554422 322110000
Q ss_pred -eec---CcccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003327 688 -FAG---PCTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 688 -~~~---~~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
... +......++.+|+... ++.|..+|.++++.+-++..+.......+. .++.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~s------------pDg~~ 383 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVS------------QDAEP 383 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEEC------------CSSSC
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEc------------cCCCE
Confidence 000 0111112468898764 347999999999998777665432222211 1256
Q ss_pred EEEEEc-cCCcEEEEEeecC
Q 003327 753 LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~~~ 771 (829)
++|+.. .++.|.++|..++
T Consensus 384 ~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEcCCCCeEEEEECCCC
Confidence 788887 4899999999866
No 196
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.28 E-value=6.6e-10 Score=121.28 Aligned_cols=239 Identities=8% Similarity=0.059 Sum_probs=150.9
Q ss_pred eceEEeeC-CcEEEEEEeCCEEEEEEcCC----------CcEEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEc
Q 003327 520 CSAAVLAD-FSQVVVGCYKGKIYFLDYLT----------GDIYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDF 587 (829)
Q Consensus 520 ~~~~~~~~-~~~v~vg~~dg~l~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~ 587 (829)
....+.++ +..+++++.+|.|+.||..+ ++.+..+..+........+.+.+. .+++|+.+|.|+.||.
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 35566665 45788888899999999876 566666665554444555655545 8999999999999999
Q ss_pred CCCeE-------EEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecCC-
Q 003327 588 RNYRC-------VYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSANR- 657 (829)
Q Consensus 588 ~tg~~-------~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~- 657 (829)
.++.. ...+..+........+.+ ++..+++++.+|.|..||+.+.. .+.+...........+..+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence 87422 122222333334445554 45677788899999999998721 134444444444445666666665
Q ss_pred EEEEEeeCCeEEEEc-CC-CCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC--------------cE
Q 003327 658 HVICCLVDGHVVALD-SS-GSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG--------------NL 720 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~-g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG--------------~~ 720 (829)
.+++++.+|.|.+|| .+ +..+..+... ..+....+. ......+..++.+|.|..||..+. ++
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s-p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC-SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC-CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 577889999999999 65 4555555432 233322211 111235777888999999998762 33
Q ss_pred EEEEecCCc-cccccccccccccccccccCCCc-EEEEEccCCcEEEEEeecC
Q 003327 721 LWEYSVGDP-ITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 721 ~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~~~~ 771 (829)
+..+..+.. +....+ ...+. .+++++.+|.|.+|+...+
T Consensus 371 ~~~~~~h~~~v~~~~~------------~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 371 LFIHGGHTAKISDFSW------------NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECCCCSSCEEEEEE------------CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEcCCCCCCceEEEE------------CCCCCCEEEEEECCCCEEEeEcccc
Confidence 333322221 221111 12244 7888999999999998754
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=8.8e-09 Score=109.17 Aligned_cols=265 Identities=10% Similarity=0.021 Sum_probs=170.7
Q ss_pred CCeEEEEecC-C-C---cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003327 485 SDIYLFVGSH-S-H---KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~-~-g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+...+|+... . + .|+.||..+++++-+++.+... ...+++|++.+|+... ++.|..||..+++
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 4467887764 2 2 7899999999988776655433 6788999999999863 5679999999999
Q ss_pred EEEEEecC-------CeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEe-eccCCcccccceeecCCC-EEEEE
Q 003327 550 IYWTFQTC-------GEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHD-VLYVA 618 (829)
Q Consensus 550 ~~w~~~~~-------~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~-~l~v~ 618 (829)
++.+...+ +.......++++++.+|++.. ++.|..+| ++++.+.. +..++.. .+...+. .++..
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~----~~~~~~~~~~~~~ 183 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY----HIHPGAPSTFYLL 183 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE----EEEeCCCceEEEE
Confidence 98877664 111234567778899999864 47799999 99999877 6654431 2222233 34445
Q ss_pred ecCCeEEEEEccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--E--EEeecCC--
Q 003327 619 STSGRLTAISVKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--I--WRCRTGG-- 685 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~--w~~~~~~-- 685 (829)
+.+|.+..++. + |+..+.... ..+.+..+....+++.+|+.+..+.++++| .++.. + |......
T Consensus 184 ~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 184 CAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred cCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence 56888999998 6 776654321 122223344455566766666788999999 54432 1 2211100
Q ss_pred ceeecC-----cccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003327 686 PIFAGP-----CTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 686 ~~~~~~-----~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
.....| ......++.+|+... ++.|..+|.++++.+-++..+.......+. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s------------~D 328 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVA------------QD 328 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEEC------------CC
Confidence 000000 001123467898754 357999999999998777765533222222 12
Q ss_pred Cc-EEEEEc-cCCcEEEEEeecC
Q 003327 751 DR-LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 751 ~~-~l~~~~-~~G~l~~~d~~~~ 771 (829)
+. .+|++. .++.|.++|..++
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCC
Confidence 55 678777 4889999999865
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.26 E-value=5.8e-09 Score=107.30 Aligned_cols=268 Identities=11% Similarity=0.105 Sum_probs=152.1
Q ss_pred ceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEE
Q 003327 478 PLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 478 p~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~ 553 (829)
|.-+..+.++.+|+++. ++.|+.||.. ++... +... ........+..+ +.+|+++. ++.|+.+|.. |+.. .
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~-~ 91 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK-GIIK-E 91 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC-CcEE-E
Confidence 33344467788999987 5789999988 77653 2322 222223444444 56888876 6789999975 6543 2
Q ss_pred Eec--CCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEe-eccCCcccccceeecCCCEEEEEec-CCeEEEEE
Q 003327 554 FQT--CGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAIS 628 (829)
Q Consensus 554 ~~~--~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~ 628 (829)
+.. .........++ .++.+|+++ .++.|+.+|+ +|+.... ..........++++. ++.+|+++. ++.|+.+|
T Consensus 92 ~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred EeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEc
Confidence 322 12222333344 456788875 4678999998 6665432 221222233444554 467888765 57899999
Q ss_pred ccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-
Q 003327 629 VKALPFHTLWL-HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS- 705 (829)
Q Consensus 629 ~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t- 705 (829)
. + |+.... ............+.. ++.+|+++. ++.|..+|.+|+... +...........+..+.++.+|+++
T Consensus 169 ~-~--g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 169 E-S--GDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITE-FKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp T-T--CCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEECSTTCEEEEET
T ss_pred C-C--CcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEE-EECCCCCCCceeEEECCCCCEEEecc
Confidence 8 4 655432 111111122333433 456888874 578999996665432 2222110011122345578899997
Q ss_pred eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 706 RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++.|+.+|+ +|++. .+....... .+. .+ .. .++.+|+++..++|..++.+++
T Consensus 244 ~~~~i~~~d~-~g~~~-~~~~~~~~~-~~~---~i------~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 244 GANKIGRLTS-NNIIE-EYPIQIKSA-EPH---GI------CF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp TTTEEEEEET-TTEEE-EEECSSSSC-CEE---EE------EE-CSSCEEEEETTTEEEEEEEC--
T ss_pred CCceEEEECC-CCceE-EEeCCCCCC-ccc---eE------Ee-cCCCEEEEecCCcEEEEEcCcc
Confidence 4688999998 56643 332221110 000 00 01 2778999977788999988743
No 199
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.25 E-value=1.9e-09 Score=111.03 Aligned_cols=229 Identities=5% Similarity=-0.018 Sum_probs=145.3
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC--cEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCc--EEEEEec
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRS--SVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGD--IYWTFQT 556 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~ 556 (829)
+.++..|..|+.|+.|..||..++ +.+-.+..+.....+..++. ++..+++++.|+.|..||..+|+ .+..+..
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 97 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV 97 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec
Confidence 345778999999999999998643 55555665655555666654 36789999999999999998885 3333433
Q ss_pred CCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeecC-------------CCEEEEEe
Q 003327 557 CGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDEV-------------HDVLYVAS 619 (829)
Q Consensus 557 ~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~-------------~~~l~v~t 619 (829)
+........+.++ +..+++++.|+.++.||..++.. ...+..+.....+..+.++ +..++.++
T Consensus 98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 3333344445443 56899999999999999887631 1122222222222222221 35788899
Q ss_pred cCCeEEEEEccCCCce----EEEeeccCCcceeeeeeeecC---CEEEEEeeCCeEEEEc-CCCCEEEEee------cCC
Q 003327 620 TSGRLTAISVKALPFH----TLWLHELEVPAFASLCITSAN---RHVICCLVDGHVVALD-SSGSIIWRCR------TGG 685 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~----~~w~~~~~~~~~~s~~~~~~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~------~~~ 685 (829)
.|+.|..||..+ ++ ....+..+.....+..+.+++ ..+..++.|+.|..|| .++...|... ...
T Consensus 178 ~D~~v~lwd~~~--~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 178 ADNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (297)
T ss_dssp TTSCEEEEEEET--TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CCCcEEEEEEcC--CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence 999999999886 43 223333333334556666653 5788888999999999 6543222211 112
Q ss_pred ceeecCccccc-CCCeEEEEeeCCeEEEEeCC
Q 003327 686 PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 686 ~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.... .. .+..|..++.||.|..|+..
T Consensus 256 ~v~~~~---~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRAS---WSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEE---ECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEE---ECCCCCEEEEEcCCCcEEEEEEC
Confidence 222221 12 23457778889999999865
No 200
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.1e-10 Score=134.65 Aligned_cols=231 Identities=6% Similarity=-0.008 Sum_probs=155.6
Q ss_pred CCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCc--EEEEEecCC
Q 003327 485 SDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~ 558 (829)
++..+++|+.+|.|..||.. +++....+..+.....+..++.+ +..+++|+.||.|+.||..+++ ....+..+.
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 46678899999999999987 44555556555555556777766 7899999999999999999987 444454444
Q ss_pred eeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeec-------------CCCEEEEEecC
Q 003327 559 EVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDE-------------VHDVLYVASTS 621 (829)
Q Consensus 559 ~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~-------------~~~~l~v~t~~ 621 (829)
.......+.++ +..+++|+.||.++.||..++.. ......+........+.+ ++..+++++.+
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d 179 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence 44455566665 78899999999999999987732 222222222333333333 35789999999
Q ss_pred CeEEEEEccCCCc--eEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeec------CCceee
Q 003327 622 GRLTAISVKALPF--HTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRT------GGPIFA 689 (829)
Q Consensus 622 g~l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~------~~~~~~ 689 (829)
|.|..||..+... ........+.....+..+.++ +..++.++.+|.|.+|| .+++..+.... ...+..
T Consensus 180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 9999999886211 333333333444456677777 67888899999999999 66642222111 111111
Q ss_pred cCccccc-CCCeEEEEeeCCeEEEEeCCCC
Q 003327 690 GPCTSFA-LPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 690 ~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+... .+..+++++.||.|+.|+..++
T Consensus 260 ---l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 260 ---ASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ---EEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ---EEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 1122 2446888889999999998754
No 201
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.22 E-value=9.6e-12 Score=132.60 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCCCccEEEEecCCCCHhHHHHHH-HhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccc------cCC
Q 003327 16 VPSSLKLLVLSGEVLPLSMWDIIS-KLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLP------ISN 88 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p------~~~ 88 (829)
.+++||.+++|||++++++.+++. +.+|+++++|.||+||+++.+.. +. ..++|+| +++
T Consensus 229 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~--~~------------~~~~G~~~~~~~~~~~ 294 (369)
T 3hgu_A 229 MKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRS--LL------------ITSESQQVIYDSFSPF 294 (369)
T ss_dssp HHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE--CC------------BCTTCSSCEEECCTTT
T ss_pred ccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceec--cc------------cccCCCcccccCCCCC
Confidence 457899999999999999999999 89989999999999998865431 11 1157888 999
Q ss_pred cEEEEecC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC--C-
Q 003327 89 CDIVLVES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS--G- 161 (829)
Q Consensus 89 ~~~~i~d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~--G- 161 (829)
++++|+|+ ++ ++|+.|||+|.+.. .+.| -..|+|||++++.+. |
T Consensus 295 ~~v~ivD~~~g~~vp~G~~GEl~vt~l~------------~~~~-----------------l~ry~tgD~~~~~~~~~g~ 345 (369)
T 3hgu_A 295 ITYDVVDSITAQTVEYGERGNVIVTHLS------------PWAF-----------------YPRVAERDTAIRLPGVSGF 345 (369)
T ss_dssp EEEEEECTTTCSBCCTTCEEEEEEEEEE------------TTEE-----------------EEEEEEEEEEEEECCSTTC
T ss_pred eEEEEECCCCCcCCCCCCceEEEEEEcC------------cccc-----------------cccccCCceEEEecCCCCC
Confidence 99999987 44 35677999998742 1111 123999999987543 2
Q ss_pred ------cEEEEeecCCcEEECCe
Q 003327 162 ------DLVFLGRKDRTIKINGQ 178 (829)
Q Consensus 162 ------~l~~~GR~dd~ik~~G~ 178 (829)
.+..++|.|+++|+.|.
T Consensus 346 ~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 346 AGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp SSCEEEEEEECC-----------
T ss_pred cCcccccceeccccCCCceeeec
Confidence 36778899999999885
No 202
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.22 E-value=2e-09 Score=113.54 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=160.3
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-eeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCC
Q 003327 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
.+..++..+++++.++.|+.||..+|+.++.+..+.. ......+.++++.+|+. ..++.|+.||..+++.++.+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 3444544556667789999999999999988876541 12344566666677765 457899999999999988776532
Q ss_pred ------cccccceeecCCCEEEEEecC------------CeEEEEEccCCCceEEE---eeccCCcceeeeeeeecCCEE
Q 003327 601 ------SIFGSPAIDEVHDVLYVASTS------------GRLTAISVKALPFHTLW---LHELEVPAFASLCITSANRHV 659 (829)
Q Consensus 601 ------~~~~~~~~~~~~~~l~v~t~~------------g~l~~~~~~~~~g~~~w---~~~~~~~~~~s~~~~~~~~~l 659 (829)
.....+.+++++..+|++..+ +.|+.||+.+ ++... ...... ......+.+++. +
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~-~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPR-QVYLMRAADDGS-L 161 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCS-SCCCEEECTTSC-E
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--ccccceeeeccCCC-cccceeECCCCc-E
Confidence 123455677777889988854 8899999886 43221 122111 123344666666 7
Q ss_pred EEEeeCCeEEEEc-CCCCEEEEeecCCc---eeecCc----ccccCCCeEEE------Ee-----------eCCeEEEEe
Q 003327 660 ICCLVDGHVVALD-SSGSIIWRCRTGGP---IFAGPC----TSFALPSQVLI------CS-----------RNGSIYSFE 714 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~w~~~~~~~---~~~~~~----~~~~~~~~i~~------~t-----------~~g~l~~~d 714 (829)
|+++ +.++++| .+|+....+..... ....+- .........+. -+ ....+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 7753 4599999 88988877654320 000000 00000000000 00 112344577
Q ss_pred CCCCcEE-EEEecCCccccccccccccccccccccC-CCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003327 715 QESGNLL-WEYSVGDPITASAYIDEHLQLKLESCLS-IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 715 ~~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
..++++. |............ .... ++..+|++ ++.|++||..++ +.......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-----------~~sp~dg~~l~~~--~~~v~~~d~~~~-------------~~~~~~~~ 293 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTG-----------LRSPKDPNQIYGV--LNRLAKYDLKQR-------------KLIKAANL 293 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEE-----------EECSSCTTEEEEE--ESEEEEEETTTT-------------EEEEEEEC
T ss_pred ccCCcEEecccccCCCcceee-----------EecCCCCCEEEEE--cCeEEEEECccC-------------eEEEEEcC
Confidence 7777764 2222111111111 1123 37788888 789999998765 22333332
Q ss_pred CCcccccceE--ECCEEEEeeeCCeEEEEeccccccc
Q 003327 793 QGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 793 ~~~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.... ....+ .+..||+++.++.|+.||.++++..
T Consensus 294 ~~~~-~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 294 DHTY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SSCC-CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCCc-cceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 2221 12222 3568999888999999999988753
No 203
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.21 E-value=1.3e-09 Score=113.48 Aligned_cols=238 Identities=9% Similarity=0.055 Sum_probs=145.4
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCe-
Q 003327 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR- 591 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~- 591 (829)
..+.+..++.++..|++|+.|+.|..||..+++. +..+..+........+.. ++..|++++.|+.+..||..+++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 3345677788888999999999999999988753 445554444334444432 35789999999999999999874
Q ss_pred -EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEe----eccCCcceeeeeeeec---------
Q 003327 592 -CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWL----HELEVPAFASLCITSA--------- 655 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~----~~~~~~~~~s~~~~~~--------- 655 (829)
....+..+.....+..+.++ +..++.++.+|.+..||..+ +. .|. ............+.++
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~--~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG--EG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS--SS-CEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC--CC-CcceeeeeccccCCcceEEEccccCCcccccc
Confidence 44444444444445555554 45788899999999999875 31 121 1111111112222221
Q ss_pred --------CCEEEEEeeCCeEEEEc-CCCC---EEEEeecC-CceeecCccccc--CCCeEEEEeeCCeEEEEeCCCCcE
Q 003327 656 --------NRHVICCLVDGHVVALD-SSGS---IIWRCRTG-GPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 656 --------~~~l~~~~~~g~i~~~d-~~g~---~~w~~~~~-~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+..++.++.|+.|.+|| .++. .+..+... ..+....+.+.. .+..+..++.||.|..|+..++..
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc
Confidence 34678888899999999 5442 22222221 123222211111 124688899999999999876311
Q ss_pred -EE---EE-ecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 721 -LW---EY-SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 721 -~w---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
.| .+ .....+....+ .+++..+++++.||.|.+|+..
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~------------sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 251 NTWSPKLLHKFNDVVWHVSW------------SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCBCCEEEECSSCEEEEEE------------CTTTCCEEEEESSSCEEEEEEC
T ss_pred cchhhhhhhcCCCcEEEEEE------------cCCCCEEEEEcCCCeEEEEEEC
Confidence 01 11 12222222221 2337889999999999999876
No 204
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.20 E-value=6.4e-09 Score=106.41 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=142.6
Q ss_pred ceEEeeCCCeEEEEe-cCCCcEEEEECCCCcEEEEEEcCC------ceeeceEEeeCCcEEEEEEe--CCEEEEEEcCCC
Q 003327 478 PLVVLKDSDIYLFVG-SHSHKFICADAKRSSVLWEIKLEG------RIECSAAVLADFSQVVVGCY--KGKIYFLDYLTG 548 (829)
Q Consensus 478 p~v~~~d~~~~l~ig-s~~g~l~~~d~~tg~~~w~~~~~~------~~~~~~~~~~~~~~v~vg~~--dg~l~~~d~~tG 548 (829)
|.-+.-+.++.+|++ +.++.|..||.. |+..+.+.... ......++...++.+|+++. ++.|+.|| .+|
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 433333456678887 467889999986 77777664321 11223444345678998885 78999999 788
Q ss_pred cEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEe-cCCe
Q 003327 549 DIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVAS-TSGR 623 (829)
Q Consensus 549 ~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t-~~g~ 623 (829)
+.+..+.... .......++. ++.+|++. .++.|+.||. +|+.++.+.... .....++++. ++.+|++. .++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCE
Confidence 8887775432 1222334444 45577764 5678999995 567776664321 2223445555 46788875 4778
Q ss_pred EEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CC-eEEEEcCCCCEEEEeecCCceeecCcccccCCC
Q 003327 624 LTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DG-HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS 699 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g-~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~ 699 (829)
|+.|+.+ |+.+..+.... ......++.. ++.+|+++. ++ .|.+||.+|+.++.+...........+....++
T Consensus 187 i~~~~~~---g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 187 VKVFNYE---GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp EEEEETT---CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred EEEEcCC---CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCC
Confidence 9999975 56666554322 1223344444 457777765 43 899999778887776543221111112344577
Q ss_pred eEEEEeeCCeEEEEeCCC
Q 003327 700 QVLICSRNGSIYSFEQES 717 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~t 717 (829)
.+|+++.++.|..|+...
T Consensus 263 ~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 263 SVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEETTTEEEEEECSC
T ss_pred cEEEECCCCeEEEEEccc
Confidence 888888788888887643
No 205
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.20 E-value=4e-10 Score=125.14 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=128.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEE-----------EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc-EEEE
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVL-----------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD-IYWT 553 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~-----------w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-~~w~ 553 (829)
.+.|..++.||.|..||+.+++.. ..+..+.....+..+.++ +.|++|+.||.|..||..+++ ....
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence 468888999999999999877421 123333344445566554 589999999999999998874 3344
Q ss_pred EecCCe-eeeee-eeecCC-CEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccceeecCCCEEEEEecCCeEEEEE
Q 003327 554 FQTCGE-VKCQP-VVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 554 ~~~~~~-~~~~~-~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
+..+.. +.+.. .+.+++ ..+.+++.|+.+..||..++++...+.. ......+..+.+++..+..++.++.+..||
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 444443 33321 334444 6788999999999999988764332221 111233456676667888888899999999
Q ss_pred ccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 629 VKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+ +..+..+........+..+++++..++.|+.|+.|.++|
T Consensus 384 ~~~--~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 384 SRA--AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp TTC--TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred Ccc--cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 887 665454444444556777888888999999999999999
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.19 E-value=2.4e-08 Score=102.76 Aligned_cols=263 Identities=13% Similarity=0.069 Sum_probs=151.4
Q ss_pred cceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEE
Q 003327 477 SPLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYW 552 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w 552 (829)
.|.-+..+.++.+|+++. ++.|..+|.. ++... +..+. .......+..+ +.+|+++. ++.|+.+|.. |+..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CCeE-
Confidence 344444466788999885 6789999988 77653 33332 12223344433 56888876 5789999977 7764
Q ss_pred EEecC--CeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEe-eccCCcccccceeecCCCEEEEEec-CCeEEEE
Q 003327 553 TFQTC--GEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAI 627 (829)
Q Consensus 553 ~~~~~--~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~ 627 (829)
.+... ........++ .++.+|+++. ++.|+.+|.+ |+.... ............++. ++.+|+++. ++.|+.+
T Consensus 96 ~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 23322 2222233333 4567888765 6789999987 766532 221222223344554 355888875 5789999
Q ss_pred EccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEE-eecCCceeecCcccccCCCeEEE
Q 003327 628 SVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWR-CRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 628 ~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
+. + |+... +.... .......+. .++.+|+++. .+.|..++.+|+.... ...... ....+..+.++.+|+
T Consensus 173 ~~-~--g~~~~-~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 173 TN-T--GKLEE-YPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA--RPHAITAGKNSEIWF 245 (300)
T ss_dssp CT-T--CCEEE-EECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--CEEEEEECSTTCEEE
T ss_pred CC-C--CcEEE-eeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC--CceEEEECCCCCEEE
Confidence 98 3 54432 22211 112233333 3567888875 4579999966665432 221111 111233455778999
Q ss_pred Eee-CCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 704 CSR-NGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~-~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++. ++.|+.+|. +|++. .+..... .......+ .++.+|+++.+ +|+.+|++
T Consensus 246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~------------~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFG------------KDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEEC------------TTSCEEEECSS-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeC------------CCCCEEEEccC-ceEEeCCC
Confidence 985 478999998 57654 2322211 11111112 25779998875 89888764
No 207
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.19 E-value=1.6e-09 Score=118.26 Aligned_cols=231 Identities=11% Similarity=0.046 Sum_probs=154.2
Q ss_pred CeEEEEecCCCcEEEEECCC----------CcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcE----
Q 003327 486 DIYLFVGSHSHKFICADAKR----------SSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDI---- 550 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t----------g~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~---- 550 (829)
...+++++.+|.|+.||..+ ++....+..+.....+..+.+++. .+++|+.||.|+.||..++..
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 45788889999999999876 566666666655555677777766 899999999999999887422
Q ss_pred ---EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCC---eEEEeeccCCcccccceeecCCC-EEEEEecCC
Q 003327 551 ---YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSG 622 (829)
Q Consensus 551 ---~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g 622 (829)
...+..+........+.+ .+..+++++.++.|+.||..++ +.+..+..+........+.+++. .+++++.+|
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 122333333333444554 5677888999999999999887 46666655555555566666555 577889999
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CC-C-------------CEEEEeecCC-
Q 003327 623 RLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SS-G-------------SIIWRCRTGG- 685 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~-g-------------~~~w~~~~~~- 685 (829)
.|..||+.+. +..+..+........+..+.+++. .++.++.++.|.+|| .+ + +++.......
T Consensus 301 ~v~vwd~~~~-~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 301 TVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp EEEEEETTCT-TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred eEEEEeCCCC-CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 9999998862 233444443444445666776664 577888899999999 54 2 4444433222
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003327 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.+..... .......+..++.+|.|..|+..++
T Consensus 380 ~v~~~~~-~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 380 KISDFSW-NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEEE-CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CceEEEE-CCCCCCEEEEEECCCCEEEeEcccc
Confidence 2222211 1111226777888999999987654
No 208
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.19 E-value=1.8e-08 Score=106.61 Aligned_cols=265 Identities=9% Similarity=0.022 Sum_probs=168.8
Q ss_pred CeEEEEec------CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003327 486 DIYLFVGS------HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 486 ~~~l~igs------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
..++|+.. .++.++.||..+++++-++..+... ...++++++.+|+++. ++.|..||..+++
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 45677654 3568999999999988776665433 6788899999999873 5679999999999
Q ss_pred EEEEEecCC------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEe-eccCCcccccceeecC-CCEEEEEe
Q 003327 550 IYWTFQTCG------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEV-HDVLYVAS 619 (829)
Q Consensus 550 ~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~-~~~l~v~t 619 (829)
++.++.... .......++++++.+|++.. ++.|..||.++++.+.. +..++... ..+.++ ...++..+
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~--v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS--VIPQPNRPRSFMTIC 170 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE--EEECTTSSSEEEEEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce--eEEcCCCCeeEEEEC
Confidence 988776532 22233456778889999864 57899999999998877 66543211 112221 23556667
Q ss_pred cCCeEEEEEccCCCceEEEeec------cC-CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecC---
Q 003327 620 TSGRLTAISVKALPFHTLWLHE------LE-VPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTG--- 684 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~------~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~--- 684 (829)
.+|.+..++.+. .|+..+... .. .+. ......++..+++.+.++.++++| ..+... |.....
T Consensus 171 ~dg~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 171 GDGGLLTINLGE-DGKVASQSRSKQMFSVKDDPI--FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp TTSSEEEEEECT-TSSEEEEEECCCCSCTTTSCB--CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCcEEEEEECC-CCcEeeeccccceEcCCCCce--EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 788888777653 255442221 11 111 112234566777778889999999 544321 221110
Q ss_pred --CceeecC-ccccc-CCCeEEEEee-----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccC
Q 003327 685 --GPIFAGP-CTSFA-LPSQVLICSR-----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 685 --~~~~~~~-~~~~~-~~~~i~~~t~-----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
+..-..+ .+... .++.+|+... .+.|+.||.++++.+-++..+. .....+. .
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~s------------p 314 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTID------------Q 314 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEE------------T
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEEC------------C
Confidence 0000000 01112 2478898765 3479999999999988887765 3222222 2
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003327 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++|++.. +.|.+||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 3778898886 89999998864
No 209
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.18 E-value=4.8e-08 Score=103.71 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=158.9
Q ss_pred CCCeEEEEecCC-------CcEEEEECCCCcE--------EEEEEcCCceeeceEEeeCCcEEEEEEe-----------C
Q 003327 484 DSDIYLFVGSHS-------HKFICADAKRSSV--------LWEIKLEGRIECSAAVLADFSQVVVGCY-----------K 537 (829)
Q Consensus 484 d~~~~l~igs~~-------g~l~~~d~~tg~~--------~w~~~~~~~~~~~~~~~~~~~~v~vg~~-----------d 537 (829)
+++..|..|+.+ +.|..|+...+.. .....+...-....++..+++.+++|+. |
T Consensus 24 ~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d 103 (365)
T 4h5i_A 24 NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGN 103 (365)
T ss_dssp ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCC
T ss_pred CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCC
Confidence 345566665432 2478887665431 1222222211112345556667777754 4
Q ss_pred CEEEEEEcCCCc--EEEEE--ec-----CCeeeeeeeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003327 538 GKIYFLDYLTGD--IYWTF--QT-----CGEVKCQPVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 538 g~l~~~d~~tG~--~~w~~--~~-----~~~~~~~~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+.+..|+..++. ..... .. .........+.+++..+.++ +.|+.|+.||.++++++..+...+. ..+.
T Consensus 104 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-V~~v 182 (365)
T 4h5i_A 104 KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-VKDL 182 (365)
T ss_dssp CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-CCEE
T ss_pred CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-eEEE
Confidence 556666654432 22111 11 01112234566677776654 4689999999999999988875544 4456
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeec--cCCcceeeeeeeecCCEEEEEeeCC----eEEEEc-CCCCEE-
Q 003327 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE--LEVPAFASLCITSANRHVICCLVDG----HVVALD-SSGSII- 678 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~--~~~~~~~s~~~~~~~~~l~~~~~~g----~i~~~d-~~g~~~- 678 (829)
.+.+++..+..++. +.+..|+..+ +..+.... .....+.+..+.+++..++.++.++ .+..++ ..+...
T Consensus 183 ~fspdg~~l~s~s~-~~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~ 259 (365)
T 4h5i_A 183 HFSTDGKVVAYITG-SSLEVISTVT--GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV 259 (365)
T ss_dssp EECTTSSEEEEECS-SCEEEEETTT--CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred EEccCCceEEeccc-eeEEEEEecc--CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence 67776777777764 4577888776 55443322 2233445667788888888888776 355666 444321
Q ss_pred ---EEeec-CCceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEe-c-CCccccccccccccccccccccCCC
Q 003327 679 ---WRCRT-GGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYS-V-GDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 679 ---w~~~~-~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
..... ...+.+.. ... +..|.+|+.|+.|..||..+++.+..+. . ...+....+. +++
T Consensus 260 ~~~~~~~~~~~~V~~~~---~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS------------pdg 324 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMD---VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS------------PDS 324 (365)
T ss_dssp EEEEEEESSCSCEEEEE---ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC------------TTS
T ss_pred eeeeeecCCCCCeEeEE---ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC------------CCC
Confidence 11111 12232221 222 3467788999999999999999887753 2 2333333322 238
Q ss_pred cEEEEEccCCcEEEEEeecC
Q 003327 752 RLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+++.++.|++|.+||...+
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 89999999999999998643
No 210
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.18 E-value=5.2e-09 Score=108.85 Aligned_cols=230 Identities=8% Similarity=0.018 Sum_probs=143.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCC
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~ 558 (829)
++..|..|+.|+.|..||..+++. +..+..+.....+..+.. ++..+++++.|+.|..||..+|+ ....+..+.
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 103 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence 467899999999999999988753 345555555455666654 36789999999999999999884 344444343
Q ss_pred eeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEE---EeeccCCcccccceeecC-----------------CCEEE
Q 003327 559 EVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEV-----------------HDVLY 616 (829)
Q Consensus 559 ~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~-----------------~~~l~ 616 (829)
.......+.++ +..+.+|+.|+.++.||..++... .....+........+.++ +..++
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence 33334445544 567889999999999998875321 111111111222222221 24678
Q ss_pred EEecCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecC----CEEEEEeeCCeEEEEc-CCCC-EEE---Ee-ecCC
Q 003327 617 VASTSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSAN----RHVICCLVDGHVVALD-SSGS-IIW---RC-RTGG 685 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~----~~l~~~~~~g~i~~~d-~~g~-~~w---~~-~~~~ 685 (829)
.++.|+.|..||..+.. .+.+..+..+.....+..+.+++ ..++.++.|+.|.+|+ .++. ..| .. ....
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 263 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND 263 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS
T ss_pred EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC
Confidence 88889999999987410 12333333333334455555554 6789999999999998 5421 001 11 1122
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003327 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+....+.+ .+..|..++.||.|..|+..
T Consensus 264 ~v~~v~~sp--~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 264 VVWHVSWSI--TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECT--TTCCEEEEESSSCEEEEEEC
T ss_pred cEEEEEEcC--CCCEEEEEcCCCeEEEEEEC
Confidence 333322111 23467788899999999965
No 211
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.16 E-value=1e-08 Score=111.05 Aligned_cols=255 Identities=13% Similarity=0.034 Sum_probs=151.4
Q ss_pred cEEEEEC--CCCcEEEE--EEcCCceeeceEEe--------------eCCcEEEEEEeC------CEEEEEEcCCCcEEE
Q 003327 497 KFICADA--KRSSVLWE--IKLEGRIECSAAVL--------------ADFSQVVVGCYK------GKIYFLDYLTGDIYW 552 (829)
Q Consensus 497 ~l~~~d~--~tg~~~w~--~~~~~~~~~~~~~~--------------~~~~~v~vg~~d------g~l~~~d~~tG~~~w 552 (829)
.++.||. .+|+.+.. +..+.......+.. ..+..++..+.+ +.|+.||..++...
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~- 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF- 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE-
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE-
Confidence 7999999 99997744 33332111011110 013455544443 68999998755543
Q ss_pred EEecCCeeeeeeeeecCCCEEEEeccCC---eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCC--eEEE
Q 003327 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSG--RLTA 626 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~~g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g--~l~~ 626 (829)
.+..+......+.+.+++..|++++.++ .|+.||..+|+...... .......+.+++++..|+ .++.++ .|+.
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 3333344456677888888888887764 89999999998764332 333455677887777776 445444 4999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-C--eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEE
Q 003327 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-G--HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g--~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
||+.+ ++.. ...........+.+.+++..+++++.+ + .|+.+| .+++.. ...........+.... .+..|+
T Consensus 252 ~d~~~--~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~sp-dG~~l~ 326 (415)
T 2hqs_A 252 MDLAS--GQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSS-DGKFMV 326 (415)
T ss_dssp EETTT--CCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECT-TSSEEE
T ss_pred EECCC--CCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECC-CCCEEE
Confidence 99887 6543 333333334567778888888888764 3 688889 666543 2222221111121111 234566
Q ss_pred EEeeC---CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC---cEEEEEeecC
Q 003327 703 ICSRN---GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG---SIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~l~~~d~~~~ 771 (829)
+++.+ ..|+.||..+|+... +.....+ ..+. ..+++..+++++.++ .|++||.+++
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~-~~~~-----------~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-LSSTFLD-ETPS-----------LAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-CCCSSSC-EEEE-----------ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EEECcCCceEEEEEECCCCCEEE-ecCCCCc-CCeE-----------EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 66653 579999999988742 2211111 1111 123367777777666 6999987643
No 212
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=99.16 E-value=3.1e-12 Score=142.41 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccCCCCCC----cchhhhccccccccc---cccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHH
Q 003327 255 LPMTSSGK----VDYASLSASTSFTIS---AQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA 327 (829)
Q Consensus 255 lP~t~~GK----i~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~ 327 (829)
-|+|++|| +||+++..+...... ........|.+++|+.|+++|+++|+++.|+.+||||++|||||+|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~e~~l~~~w~~~l~~~~i~~~~~ff~lGg~Sl~a~~l~ 83 (508)
T 4f6l_B 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRDPSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVV 83 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcCCCCCCcccHHHHhcCChhhhcccCCccCCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCChHHcCchHHHHHHHH
Confidence 46666554 555555443222111 11223446778899999999999999999999999999999999999998
Q ss_pred HHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 328 HNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 328 ~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+| .+++..+|++||++.||.+|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~t~~~la~~~~~~~ 115 (508)
T 4f6l_B 84 SHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQ 115 (508)
T ss_dssp --------------------------------
T ss_pred HHHHHcCCCccHHHHhcCCcHHHHHHHHHhhc
Confidence 776 378899999999999999998754
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=8.3e-09 Score=109.81 Aligned_cols=277 Identities=12% Similarity=0.049 Sum_probs=171.3
Q ss_pred eCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCC
Q 003327 526 ADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNY 590 (829)
Q Consensus 526 ~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg 590 (829)
.++..+|+.+.. +.|..+|..|++++.++..+... ...++++++.+|++.. ++.|..+|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 355677877653 58999999999999999887655 5677888899999863 568999999999
Q ss_pred eEEEeeccC-------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CEEE
Q 003327 591 RCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RHVI 660 (829)
Q Consensus 591 ~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~ 660 (829)
+.+..+..+ +..-....++++++++|++.. ++.|.++|..+ ++.+.++..... ..+.+.+ ..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g~----~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPDC----YHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSE----EEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC--CeEEEEEEcCCc----eeeccCCCcEEE
Confidence 998887664 122234567888899999874 57899999988 888777765432 1222222 3444
Q ss_pred EEeeCCeEEEEc-CCCCEEEEee----cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE----EEEecCCcc
Q 003327 661 CCLVDGHVVALD-SSGSIIWRCR----TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL----WEYSVGDPI 730 (829)
Q Consensus 661 ~~~~~g~i~~~d-~~g~~~w~~~----~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~----w~~~~~~~~ 730 (829)
..+.+|.+..++ .+++..+... ... +++.... ....++.+|+.+..|.++.+|..++... |.......+
T Consensus 234 ~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~-~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 234 MNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA-FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE-ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee-ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 456678888888 7777765421 111 1111100 0112467888888899999998766532 221100100
Q ss_pred ccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003327 731 TASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (829)
.. ........ ......+++.+|+... ++.|.++|..+. +.......+.......
T Consensus 313 ~~-g~~p~g~~--~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-------------kvv~~I~vg~~P~gia 376 (426)
T 3c75_H 313 AD-DWRPGGWQ--QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-------------ERINKIELGHEIDSIN 376 (426)
T ss_dssp GG-TEEECSSS--CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEEEEEEECEEE
T ss_pred cc-ccccCCce--eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-------------eEEEEEECCCCcCeEE
Confidence 00 00000000 0011123677888753 346999998765 4444444332211111
Q ss_pred eE-ECC-EEEEeee-CCeEEEEeccccccc
Q 003327 801 VM-IGG-RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 801 ~~-~~~-~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
+. ++. .+|+... ++.|..+|..++++.
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 11 345 6888774 899999999999864
No 214
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.14 E-value=5.4e-08 Score=102.13 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=157.7
Q ss_pred CeEEEEe-cCCCcEEEEECC-CCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeC-CEEEEEEcC--CCcEE--EEEec
Q 003327 486 DIYLFVG-SHSHKFICADAK-RSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYL--TGDIY--WTFQT 556 (829)
Q Consensus 486 ~~~l~ig-s~~g~l~~~d~~-tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-g~l~~~d~~--tG~~~--w~~~~ 556 (829)
+..+|++ +.++.|+.||.. +|+ .+........ .....+++++..+++++.+ +.|..|+.. +|+.. ..+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ-VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC-CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCC-CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 4567777 568899999984 453 3333333332 3356788888889999876 899998876 67643 33443
Q ss_pred CCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC---CeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN---YRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
+. ......+.+++..+|+++. ++.++.||..+ ++.+....... ....+.+++++..+|++. .++.++.||+.+
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 33 2334456667777877765 77899999843 34444443332 344566777677898887 788999999875
Q ss_pred CCceEE--E--eeccC-CcceeeeeeeecCCEEEEEe-eCCeEEEEc-C--CCCEEE--Eee-cCCce--eecC-ccccc
Q 003327 632 LPFHTL--W--LHELE-VPAFASLCITSANRHVICCL-VDGHVVALD-S--SGSIIW--RCR-TGGPI--FAGP-CTSFA 696 (829)
Q Consensus 632 ~~g~~~--w--~~~~~-~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~--~g~~~w--~~~-~~~~~--~~~~-~~~~~ 696 (829)
.++.. . ..... ........+.+++..+++.+ .++.+..++ . +|+... ... ..... ...+ .+...
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 161 -DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp -TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred -CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 13322 1 11111 11223456677778787776 678899998 3 354321 111 11100 0000 11222
Q ss_pred CCC-eEEEEe-eCCeEEEEeCC--CCcEE--EEEecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEee
Q 003327 697 LPS-QVLICS-RNGSIYSFEQE--SGNLL--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVN 769 (829)
Q Consensus 697 ~~~-~i~~~t-~~g~l~~~d~~--tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~ 769 (829)
.++ .+|++. .++.|..||.. +++.. ........... ... ..++..+++++ .++.|.+|+.+
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~-----------s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG-FNV-----------DHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC-EEE-----------CTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccce-EEE-----------CCCCCEEEEecCCCCeEEEEEEc
Confidence 333 677665 57889999987 44432 23333222111 111 12367788887 57889998665
No 215
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.14 E-value=2e-08 Score=103.35 Aligned_cols=229 Identities=6% Similarity=-0.058 Sum_probs=139.5
Q ss_pred eceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeec
Q 003327 520 CSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~ 597 (829)
.++++.++++ .+|+++.++.|+.||..++ ...+...........++. ++.+|+++. ++.|+.||+++|+......
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 3677877877 6778888899999998887 333433333333444444 455777665 4789999998998765432
Q ss_pred c-CCc---ccccceeecCCCEEEEE-----e-------------cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec
Q 003327 598 C-GGS---IFGSPAIDEVHDVLYVA-----S-------------TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA 655 (829)
Q Consensus 598 ~-~~~---~~~~~~~~~~~~~l~v~-----t-------------~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~ 655 (829)
. .+. ......+++ ++.+|++ + ..+.|+.++.+ |+..... .........++.++
T Consensus 108 ~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~-~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSAPI-RDRVKPNGLAFLPS 182 (296)
T ss_dssp EETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEEEE-CCCSSEEEEEECTT
T ss_pred ccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEEee-cCCCCCccEEECCC
Confidence 2 111 123445555 5678884 3 13578888765 3332211 11122244566667
Q ss_pred CCEEEEEeeCCeEEEEc-C-CCCE-E--EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003327 656 NRHVICCLVDGHVVALD-S-SGSI-I--WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~-~g~~-~--w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
++.++..+.++.|++++ . +|++ . ..+... ......+..+.+|.+|+++ +++|++||++ |+.+..+..+..+
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~~ 258 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE--PGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQTT 258 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS--SSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSCC
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC--CCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCCc
Confidence 77775556678999999 4 6765 1 122111 0011123456688999999 8899999986 8877776655442
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003327 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
....+.. .+++.+|+++.+ +|+.++.+++.
T Consensus 259 ~~~~f~~-----------~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 259 SNLCFGG-----------PEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp CEEEEES-----------TTSCEEEEEETT-EEEEEECSCCB
T ss_pred eeEEEEC-----------CCCCEEEEEcCC-eEEEEEccccc
Confidence 2211111 126789999865 69999887653
No 216
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.5e-09 Score=117.52 Aligned_cols=226 Identities=13% Similarity=0.034 Sum_probs=139.9
Q ss_pred EEEEecCCCcEEEEECCCCcEEEE----EEcCCceeeceEEeeC------CcEEEEEEeCCEEEEEEcCCCcEE------
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWE----IKLEGRIECSAAVLAD------FSQVVVGCYKGKIYFLDYLTGDIY------ 551 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~----~~~~~~~~~~~~~~~~------~~~v~vg~~dg~l~~~d~~tG~~~------ 551 (829)
.+..++.|+.|..||..+++..+. +..+........+.++ ++.|.+++.|+.|..||..+++..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 455577889999999988875332 2222222334556554 468899999999999999877421
Q ss_pred -----EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccc--eeecCC-CEEEEEecCC
Q 003327 552 -----WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSP--AIDEVH-DVLYVASTSG 622 (829)
Q Consensus 552 -----w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~--~~~~~~-~~l~v~t~~g 622 (829)
..+..+.....+..+.+ ++.|++|+.||.|..||..+++ +...+..+...+.+. ...+++ ..++.++.|+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred ecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 12332333333344443 4689999999999999998773 333344343333333 234444 5788899999
Q ss_pred eEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-CCceeecCcccccCC
Q 003327 623 RLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALP 698 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-~~~~~~~~~~~~~~~ 698 (829)
.+..||+.+ ++..-...... ....+..+.+++..+..++.++.+..+| .++..+..+.. ...+.+..+.+ .+
T Consensus 334 tvklWD~~~--~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp--~g 409 (524)
T 2j04_B 334 YFYIFNPKD--IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR--LH 409 (524)
T ss_dssp EEEEECGGG--HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS--SC
T ss_pred eEEEEECCC--CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC--CC
Confidence 999999886 54322221111 1123556777777888888899999999 88876554432 22343332212 23
Q ss_pred CeEEEEeeCCeEEEEeCCCC
Q 003327 699 SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~tG 718 (829)
..+..|+.||.|..||...+
T Consensus 410 ~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 410 PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CBCEEEETTTEEECCBSCSS
T ss_pred CeEEEEECCCEEEEEechHh
Confidence 46788999999999997654
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.11 E-value=1e-07 Score=101.01 Aligned_cols=276 Identities=11% Similarity=0.027 Sum_probs=163.2
Q ss_pred eCCcEEEEEEe--CC---EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEEEcCCC
Q 003327 526 ADFSQVVVGCY--KG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYALDFRNY 590 (829)
Q Consensus 526 ~~~~~v~vg~~--dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~d~~tg 590 (829)
.++..+|+... .. .|+.||..+++++-++..+... ...++++++.+|+.. .++.+..||..++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 45567777653 22 7899999999998777665432 566777889999985 2567999999999
Q ss_pred eEEEeeccC-------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEE-
Q 003327 591 RCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHV- 659 (829)
Q Consensus 591 ~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l- 659 (829)
+.+..+..+ +..-..+.++++++.+|++.. ++.|..+| ++ ++.+.. ...... ..+.+.++..
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~~~~~----~~~~~~~~~~~ 180 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLSSPTC----YHIHPGAPSTF 180 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcCCCce----EEEEeCCCceE
Confidence 888777654 112235567888899999874 47799999 87 777766 544322 2233344333
Q ss_pred EEEeeCCeEEEEcCCCCEEEEeec------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE--EEEecCCcc-
Q 003327 660 ICCLVDGHVVALDSSGSIIWRCRT------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL--WEYSVGDPI- 730 (829)
Q Consensus 660 ~~~~~~g~i~~~d~~g~~~w~~~~------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~--w~~~~~~~~- 730 (829)
+..+.+|.+..+|.+|+..+.... ..+++..+.... .++.+|+.+..+.++.+|..++... -.+......
T Consensus 181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 334457778777765666544321 111111111111 2456666667889999998766422 122111100
Q ss_pred ccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003327 731 TASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (829)
....+....... .....+++.+|+... ++.|+++|..++ +........+.. ...
T Consensus 260 ~~~~~~p~g~~~--~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-------------~vv~~i~~g~~p-~~i 323 (373)
T 2mad_H 260 KADTWRPGGWQQ--VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-------------QTSSQISLGHDV-DAI 323 (373)
T ss_pred cccceecCceEe--EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-------------EEEEEEECCCCc-CeE
Confidence 000000000000 001224678888754 357999998865 444444444322 222
Q ss_pred eE--ECC-EEEEee-eCCeEEEEeccccccc
Q 003327 801 VM--IGG-RVFVGC-RDDYIYCIALETQHLE 827 (829)
Q Consensus 801 ~~--~~~-~l~vg~-~~g~l~~~d~~tg~~~ 827 (829)
.+ ++. .+|++. .++.|..+|..++++.
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 22 344 577766 4899999999998864
No 218
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.11 E-value=1.4e-08 Score=104.33 Aligned_cols=223 Identities=10% Similarity=0.015 Sum_probs=135.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEec-CCee---ee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQT-CGEV---KC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~-~~~~---~~ 562 (829)
.+|+++.++.|+.||+.++ . -.+..+........+..++ .+|+++. ++.|+.||.++|+....... .+.. ..
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 118 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-L-SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN 118 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-E-EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred EEEEeCCCCEEEEEECCCC-e-EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence 6888888899999999887 3 2344443333345565654 5777765 47899999989987654322 1111 11
Q ss_pred eeeeecCCCEEEE-----ec-------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003327 563 QPVVDAPRQLIWC-----GS-------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 563 ~~~~~~~~~~i~~-----gs-------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
...++ .++.+|+ |+ ..+.|+.+|.. |+...... .......+++++++..++..+.++.|
T Consensus 119 ~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 119 DVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-DRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-CCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-CCCCCccEEECCCCCEEEEeCCCCeE
Confidence 23344 4567888 43 14589999977 66543222 22223445667666777666667899
Q ss_pred EEEEccCCCceE---EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003327 625 TAISVKALPFHT---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 625 ~~~~~~~~~g~~---~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
+.|+.+. +|+. ...+..........++. .++.+|+++ +++|.+||.+|+.+..+.....+.+. +.....++.|
T Consensus 196 ~~~~~~~-~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~~~-~f~~~d~~~L 271 (296)
T 3e5z_A 196 HRYCLNA-RGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA-GDGVHVLTPDGDELGRVLTPQTTSNL-CFGGPEGRTL 271 (296)
T ss_dssp EEEEECS-SSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE-TTEEEEECTTSCEEEEEECSSCCCEE-EEESTTSCEE
T ss_pred EEEEECC-CCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc-CCeEEEECCCCCEEEEEECCCCceeE-EEECCCCCEE
Confidence 9999862 2543 11111111111233343 456799998 89999999668887776654431111 1111234579
Q ss_pred EEEeeCCeEEEEeCCCCcEE
Q 003327 702 LICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~ 721 (829)
|+++.+ ++++++.+++++.
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEETT-EEEEEECSCCBCC
T ss_pred EEEcCC-eEEEEEccccccc
Confidence 998865 6999999988764
No 219
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.10 E-value=3.4e-08 Score=116.09 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred eCCCeEEEEecC-CC-----cEEEEECCCCcEEEEEEcCCc------------------------eeeceEEeeCCcEEE
Q 003327 483 KDSDIYLFVGSH-SH-----KFICADAKRSSVLWEIKLEGR------------------------IECSAAVLADFSQVV 532 (829)
Q Consensus 483 ~d~~~~l~igs~-~g-----~l~~~d~~tg~~~w~~~~~~~------------------------~~~~~~~~~~~~~v~ 532 (829)
+.++..|+.++. ++ .|+.||..+|+....+..+.. ...++.+++|++.|+
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~ 124 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL 124 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE
Confidence 335667777776 77 899999999987655543221 135678999999888
Q ss_pred EEEeCCEEEEEEcCCC---cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-c------
Q 003327 533 VGCYKGKIYFLDYLTG---DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-I------ 602 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~------ 602 (829)
+++. +.|+.||..+| +... +..+......+.+++++..|++++ ++.|+.||..+|+.......+.. +
T Consensus 125 ~~~~-~~i~~~d~~~~~~~~~~~-l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~ 201 (741)
T 2ecf_A 125 FPLG-GELYLYDLKQEGKAAVRQ-LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAE 201 (741)
T ss_dssp EEET-TEEEEEESSSCSTTSCCB-CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred EEeC-CcEEEEECCCCCcceEEE-cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccc
Confidence 8874 89999999888 5432 222333345667888888888776 46899999999887654433221 1
Q ss_pred ---------cccceeecCCCEEEEEecCC---------------------------------eEEEEEccCCCceEEEee
Q 003327 603 ---------FGSPAIDEVHDVLYVASTSG---------------------------------RLTAISVKALPFHTLWLH 640 (829)
Q Consensus 603 ---------~~~~~~~~~~~~l~v~t~~g---------------------------------~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++++..|++++.++ .|+.||+++. ++.....
T Consensus 202 ~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~ 280 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWID 280 (741)
T ss_dssp HHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEEC
T ss_pred eeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEec
Confidence 24567777778788776554 6777776530 2222211
Q ss_pred c--cCCcceeeeeeeecCCEEEEEee-----CCeEEEEc-CCCCEEEEeecCCc----eeecCcccccCCC-eEEEEeeC
Q 003327 641 E--LEVPAFASLCITSANRHVICCLV-----DGHVVALD-SSGSIIWRCRTGGP----IFAGPCTSFALPS-QVLICSRN 707 (829)
Q Consensus 641 ~--~~~~~~~s~~~~~~~~~l~~~~~-----~g~i~~~d-~~g~~~w~~~~~~~----~~~~~~~~~~~~~-~i~~~t~~ 707 (829)
. ..........+ +++..+++... +..|+.+| .+|+.......... ....+. ...++ .++.++.+
T Consensus 281 ~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~--~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 281 LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR--FLDDGSILWSSERT 357 (741)
T ss_dssp CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE--ECTTSCEEEEECTT
T ss_pred CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE--ECCCCeEEEEecCC
Confidence 1 11223356677 88888887764 45689999 88876544332211 011111 22234 45555666
Q ss_pred C--eEEEEeCCC
Q 003327 708 G--SIYSFEQES 717 (829)
Q Consensus 708 g--~l~~~d~~t 717 (829)
| .|+.+|..+
T Consensus 358 g~~~l~~~~~~~ 369 (741)
T 2ecf_A 358 GFQHLYRIDSKG 369 (741)
T ss_dssp SSCEEEEECSSS
T ss_pred CccEEEEEcCCC
Confidence 6 567777543
No 220
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.10 E-value=2.4e-08 Score=102.06 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=139.2
Q ss_pred ceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEecCC------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCe
Q 003327 521 SAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCG------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYR 591 (829)
Q Consensus 521 ~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~ 591 (829)
..++..++ .+|++ ..++.|+.||.. |+.++.+...+ .......+.+.++.+|++.. ++.|+.|| .+|+
T Consensus 34 ~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 34 GVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred eEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 34455554 46666 457899999965 88877764321 11223344346788998874 78999999 6788
Q ss_pred EEEeeccCC-cccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEe-eCC
Q 003327 592 CVYKLPCGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCL-VDG 666 (829)
Q Consensus 592 ~~w~~~~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~-~~g 666 (829)
.+..+.... .......++. ++.+|++. .++.|+.|+.+ |+.++.+.... ......++.. ++.+|++. .++
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~ 185 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAH 185 (286)
T ss_dssp EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGT
T ss_pred EEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC---CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCC
Confidence 877664432 2223345555 35677775 46789999965 56666553221 1123344443 46688775 478
Q ss_pred eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-C-eEEEEeCCCCcEEEEEecCCccc--ccccccccccc
Q 003327 667 HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-G-SIYSFEQESGNLLWEYSVGDPIT--ASAYIDEHLQL 742 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-g-~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~ 742 (829)
.|.++|.+|+.++.+...+.......+..+.++.+|+++.. + .|..||. +|+.++.+....... ....++.
T Consensus 186 ~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~---- 260 (286)
T 1q7f_A 186 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD---- 260 (286)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET----
T ss_pred EEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC----
Confidence 99999977777776654321111112334557889998754 3 8999995 577777665433211 1111111
Q ss_pred ccccccCCCcEEEEEccCCcEEEEEee
Q 003327 743 KLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.+|+++.++.|.+|+..
T Consensus 261 --------~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 261 --------DGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp --------TTEEEEEETTTEEEEEECS
T ss_pred --------CCcEEEECCCCeEEEEEcc
Confidence 5567877788889998764
No 221
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.09 E-value=6.8e-08 Score=102.20 Aligned_cols=268 Identities=11% Similarity=0.057 Sum_probs=165.0
Q ss_pred CCcEEEEEEe------CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCC
Q 003327 527 DFSQVVVGCY------KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNY 590 (829)
Q Consensus 527 ~~~~v~vg~~------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg 590 (829)
++..+|+... |+.++.||..+|+++-++..+... ...++++++.+|+++. ++.|..||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 4567787653 679999999999998777665433 5677788889999863 457999999999
Q ss_pred eEEEeeccC------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecC-CEEE
Q 003327 591 RCVYKLPCG------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSAN-RHVI 660 (829)
Q Consensus 591 ~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~-~~l~ 660 (829)
+.+..+... +.......+++++..+|++.. ++.|.+||.++ ++.+.. ...... ......+.+ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~~~~i~~~~~--~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYVEDVTAAAGC--WSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEEEEEGGGTTE--EEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEEEEEecCCCc--ceeEEcCCCCeeEE
Confidence 988877653 222345567777889999875 46899999988 777665 544322 112223332 3555
Q ss_pred EEeeCCeEEEEc--CCCCEEEEeec------CC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE--EEecCCc
Q 003327 661 CCLVDGHVVALD--SSGSIIWRCRT------GG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW--EYSVGDP 729 (829)
Q Consensus 661 ~~~~~g~i~~~d--~~g~~~w~~~~------~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w--~~~~~~~ 729 (829)
..+.+|.+..++ .+|+..+.... +. +++... ...+..+++.+.++.++.+|...++..- .+.....
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP---ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC---EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe---cccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 566778888777 35776643221 11 111110 1123467777888999999987654321 1111110
Q ss_pred ----cccccccccccccccccccCCCcEEEEEcc-----------CCcEEEEEeecCccccccccccccceeeeeeccCC
Q 003327 730 ----ITASAYIDEHLQLKLESCLSIDRLVCICTS-----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG 794 (829)
Q Consensus 730 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (829)
....+..... .....+++.+|+... .+.|++||..++ +.........
T Consensus 245 ~~~~~~~~p~g~~~-----~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------------~~v~~i~~~~ 306 (361)
T 2oiz_A 245 EDKAKNWVPGGYNL-----VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------------QRVARIPGRD 306 (361)
T ss_dssp HHHHTTCEECCSSC-----EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-------------EEEEEEECTT
T ss_pred cccccccccCCeeE-----EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-------------cEEEEEecCC
Confidence 0000000000 001223678888754 347999998765 4455555444
Q ss_pred cccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003327 795 DIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 795 ~~~~~~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.....+ ++..||+++. +.|..||..++
T Consensus 307 --p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 --ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp --CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred --eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 222233 3568888886 99999999999
No 222
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.08 E-value=3e-08 Score=107.28 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=139.9
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC---EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
+.|+.||..+++.. .+..+.....++.+++++..++.++.++ .|+.||..+|+..... ........+.+.+++..
T Consensus 159 ~~i~i~d~~g~~~~-~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCE-EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcccCEEEcCCCCE
Confidence 68999998755543 3333334456788999999999888775 8999999999886433 33334556778877776
Q ss_pred EE-EeccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcc
Q 003327 573 IW-CGSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~-~gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|+ +++.++ .|+.||..+++.. .+..+......+.+++++..|++++.+ + .|+.+|..+ ++.. ........
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~~~-~l~~~~~~ 312 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQ-RITWEGSQ 312 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCE-ECCCSSSE
T ss_pred EEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CCEE-EEecCCCc
Confidence 66 555554 4999999998874 333334445567777777888877753 4 688899886 5432 22222233
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEeeCC---eEEEEeCCCC
Q 003327 647 FASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSRNG---SIYSFEQESG 718 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g---~l~~~d~~tG 718 (829)
...+.+++++..+++++.+ ..|+.+| .+|+.. .......+.. +. ...+ ..|++++.++ .|+.||..++
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~-~~--~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDET-PS--LAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEE-EE--ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCC-eE--EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 3566778888888888764 4799999 777763 2322221111 11 2223 4566666665 7999998744
Q ss_pred c
Q 003327 719 N 719 (829)
Q Consensus 719 ~ 719 (829)
.
T Consensus 389 ~ 389 (415)
T 2hqs_A 389 F 389 (415)
T ss_dssp C
T ss_pred c
Confidence 4
No 223
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.08 E-value=2.3e-08 Score=106.14 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=137.6
Q ss_pred eeCCCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--C
Q 003327 482 LKDSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--C 557 (829)
Q Consensus 482 ~~d~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~ 557 (829)
++.++..+.+++ .|+.|..||+.+++.+..+..+.. ..+..+++++..+.+++ ++.+..|+..+|+.+..... +
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-VKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-CCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCT
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-eEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCC
Confidence 344555665544 678999999999999988775554 35778889988888877 55688888888887654322 3
Q ss_pred CeeeeeeeeecCCCEEEEeccCC----eEEEEEcCCCeEEE----eeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003327 558 GEVKCQPVVDAPRQLIWCGSHDH----NLYALDFRNYRCVY----KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g----~l~~~d~~tg~~~w----~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
........+.+++..+++++.++ .++.||...+...- .+..+.....+..+++++..|.+++.|+.|..||.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 44445556677777888887776 57788877765422 22223334456677787889999999999999999
Q ss_pred cCCCceEEEee-ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 630 KALPFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 630 ~~~~g~~~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.+ ++.+..+ ..+.....+.++++++..++.++.|++|.+|+
T Consensus 299 ~~--~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 299 KD--LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TT--TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CC--CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 88 8888765 34455557788899999999999999999998
No 224
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.07 E-value=6.6e-08 Score=99.36 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=144.2
Q ss_pred eEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEE-Eee
Q 003327 522 AAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCV-YKL 596 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~-w~~ 596 (829)
..+..+ +.+|+++. ++.|+.+|.. |+... +.... .......++ .++.+|+++. ++.|+.+|.. |+.. +..
T Consensus 25 i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~ 99 (300)
T 2qc5_A 25 ITSSED-GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEYPL 99 (300)
T ss_dssp EEECTT-SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred eeECCC-CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEecC
Confidence 344444 56888874 6899999977 77653 33221 122223333 4567888765 5789999988 6654 222
Q ss_pred ccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEE-EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcC
Q 003327 597 PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTL-WLHELEVPAFASLCITSANRHVICCLV-DGHVVALDS 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~-w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~ 673 (829)
...........++. ++.+|+++. ++.|+.++.+ |+.. +.............+.. ++.+|+++. ++.|+.++.
T Consensus 100 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 100 PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD---GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN 174 (300)
T ss_dssp SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT
T ss_pred CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC---CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC
Confidence 21222223344454 567888776 6789999876 4443 22211112223333433 455888775 578999996
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCC
Q 003327 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
+|+... +...........+..+.++.+|+++. ++.|+.+|. +|++...... ..........+ .+
T Consensus 175 ~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d------------~~ 240 (300)
T 2qc5_A 175 TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG------------KN 240 (300)
T ss_dssp TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC------------ST
T ss_pred CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC------------CC
Confidence 666542 22211111111123445778999976 457999998 6776543211 11111111112 15
Q ss_pred cEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceEE-CCEEEEeeeCCeEEEEecc
Q 003327 752 RLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVMI-GGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 752 ~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~l~vg~~~g~l~~~d~~ 822 (829)
+.+|+++. ++.|+++|.. +. +..+.++ .....+..+. ++.||+++.+ .|+.+|++
T Consensus 241 g~l~v~~~~~~~i~~~~~~-g~--------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITND-NT--------------IQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SC--------------EEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred CCEEEeccCCCeEEEECCC-Cc--------------EEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 56888875 4789999873 21 1112222 1122233333 6889999985 89999875
No 225
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.07 E-value=1.8e-08 Score=102.31 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=122.4
Q ss_pred CeEEEEec---CCCcEEEEEC-CCCcEEEEEEcCCceeeceEEee---CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003327 486 DIYLFVGS---HSHKFICADA-KRSSVLWEIKLEGRIECSAAVLA---DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 486 ~~~l~igs---~~g~l~~~d~-~tg~~~w~~~~~~~~~~~~~~~~---~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
++.+...+ +++.|..|+. .+|+.+-....+..-.....++. ++..++.++.|+.|..||++||+.+.++..+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 45555553 5889999998 55887776666554333445555 66789999999999999999999999886433
Q ss_pred e---eeeeeeeecCCCEE------------EEeccCCeEEEEEcCCCeEEEeecc---CCcccccceeecCCCEEEEEec
Q 003327 559 E---VKCQPVVDAPRQLI------------WCGSHDHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 559 ~---~~~~~~~~~~~~~i------------~~gs~~g~l~~~d~~tg~~~w~~~~---~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
. ......+.+++..+ ..|+.|+.+..||+.+|+.+..+.. .+........+.++..+..++.
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT 303 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEET
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcC
Confidence 2 12222344444433 3467788999999999988754421 1111000001111245677788
Q ss_pred CCeEEEEEccCCCceEEEeeccCCc-ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 621 SGRLTAISVKALPFHTLWLHELEVP-AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~~~~-~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|+.|..||+.+ |+.+-.+..+.. ......+++++..++.|+.|+.|.+||
T Consensus 304 DgTIkIWDl~t--Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 304 SGTIAIWDLLL--GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp TSCEEEEETTT--CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCcEEEEECCC--CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 99999999998 888877754433 233467888899999999999999886
No 226
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.05 E-value=1.8e-07 Score=98.17 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=153.7
Q ss_pred cEEEEE-EeCCEEEEEEcC-CCc--EEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcC--CCeEE--EeeccC
Q 003327 529 SQVVVG-CYKGKIYFLDYL-TGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFR--NYRCV--YKLPCG 599 (829)
Q Consensus 529 ~~v~vg-~~dg~l~~~d~~-tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~--tg~~~--w~~~~~ 599 (829)
..+|++ ..++.|+.||.. +|+ .+..+..... .....+.+++..+++++.+ +.+..|+.. +|+.. ..+...
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ-VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC-CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCC-CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 356666 558999999974 553 3333433333 2334566677778888776 899998876 66643 333333
Q ss_pred CcccccceeecCCCEEEEEec-CCeEEEEEccCC-CceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CC-
Q 003327 600 GSIFGSPAIDEVHDVLYVAST-SGRLTAISVKAL-PFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SS- 674 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~-~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~- 674 (829)
+ ....+.+++++..+|++.. ++.+..|+..+. .++......... ......+.+++..+++++ .++.+..|| .+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 3 3345567777778888775 778999998420 133333333222 234556777788898887 789999999 65
Q ss_pred CCEEE------EeecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCC--CCcEEEEEe---cCCccccccccccccc
Q 003327 675 GSIIW------RCRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQE--SGNLLWEYS---VGDPITASAYIDEHLQ 741 (829)
Q Consensus 675 g~~~w------~~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~--tG~~~w~~~---~~~~~~~~~~~~~~~~ 741 (829)
|+... ....+..+.. +....++ .+|+++ .++.+..|+.. +|++..... .+.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~---~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 233 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRH---MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA----- 233 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEE---EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE-----
T ss_pred CceeeecccccccCCCCCcce---EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc-----
Confidence 76532 1112212211 1122234 577665 67889999984 465532211 11110000000
Q ss_pred cccccccCCCcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-eCCeEE
Q 003327 742 LKLESCLSIDRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIY 817 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~vg~-~~g~l~ 817 (829)
.......++..+|+.. .++.|.+||....... .+........+. .....+ .+..||+++ .++.+.
T Consensus 234 -~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~---------~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 234 -ADIHITPDGRHLYACDRTASLITVFSVSEDGSV---------LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---------EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEE
T ss_pred -cceEECCCCCEEEEEecCCCEEEEEEEcCCCCc---------eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEE
Confidence 0001122366777554 6889999998731000 122222222222 222222 345788888 468888
Q ss_pred EE--ecccccc
Q 003327 818 CI--ALETQHL 826 (829)
Q Consensus 818 ~~--d~~tg~~ 826 (829)
.| |.++|++
T Consensus 303 v~~~d~~~g~~ 313 (343)
T 1ri6_A 303 VYEIVGEQGLL 313 (343)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEcCCCcee
Confidence 88 6557754
No 227
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.03 E-value=7.6e-08 Score=97.71 Aligned_cols=182 Identities=8% Similarity=-0.028 Sum_probs=113.7
Q ss_pred CCEEEEec---cCCeEEEEEc-CCCeEEEeeccCCccccccee---ecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 570 RQLIWCGS---HDHNLYALDF-RNYRCVYKLPCGGSIFGSPAI---DEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 570 ~~~i~~gs---~~g~l~~~d~-~tg~~~w~~~~~~~~~~~~~~---~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
++.++..+ +++.|..|+. .+|+.+-.............+ ++++..+..++.|+.|..||+++ |+.+..+..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--CcEEEEEcC
Confidence 45555553 5899999998 558877665554433333333 33567888889999999999998 988877753
Q ss_pred CCc---ceeeeeeeecCCEE------------EEEeeCCeEEEEc-CCCCEEEEee----cCC--ceeecCcccccCCCe
Q 003327 643 EVP---AFASLCITSANRHV------------ICCLVDGHVVALD-SSGSIIWRCR----TGG--PIFAGPCTSFALPSQ 700 (829)
Q Consensus 643 ~~~---~~~s~~~~~~~~~l------------~~~~~~g~i~~~d-~~g~~~w~~~----~~~--~~~~~~~~~~~~~~~ 700 (829)
+.. .....++.+++..+ ..|+.++.+..+| .+|+.+..+. .+. ..++. ...+..
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg----~~sg~~ 297 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG----DVKDHC 297 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE----EEETTE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc----ccCCCE
Confidence 221 11222455555444 3355678888899 8887654332 111 11110 001234
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 701 VLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+..++.|+.|..||..+|+.+-++..+.. +.....+ .+++.+++.|+.|++|++||.
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf-----------SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW-----------SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE-----------CSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE-----------CCCCCEEEEEECCCcEEEecC
Confidence 66677899999999999999888764332 2221111 123789999999999999985
No 228
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.01 E-value=2.7e-07 Score=97.18 Aligned_cols=269 Identities=11% Similarity=0.064 Sum_probs=147.0
Q ss_pred eEEEEecCCC------cEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEE--EEE
Q 003327 487 IYLFVGSHSH------KFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIY--WTF 554 (829)
Q Consensus 487 ~~l~igs~~g------~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~--w~~ 554 (829)
.++|+|+..+ .++.+|..+|+.... ...........++++++. +|+.+. ++.|+.||..+|+.. ...
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 4688886532 266777888886542 111122223567777876 887776 478999999887743 222
Q ss_pred ecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcC-CCeE--EEeeccCCc---------ccccceeecCCCEEEEEec-
Q 003327 555 QTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFR-NYRC--VYKLPCGGS---------IFGSPAIDEVHDVLYVAST- 620 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~-tg~~--~w~~~~~~~---------~~~~~~~~~~~~~l~v~t~- 620 (829)
...........+++++..+|+++ .++.+..||.. +|+. +......+. ....+.+++++. +|+...
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 22222233455677778888887 56889999984 4443 333322211 122355666566 666654
Q ss_pred CCeEEEEEccCCCceEEEe--eccC-CcceeeeeeeecCCEEEEEe-eCCeEEEEc-C--CCCEEE--EeecCCce----
Q 003327 621 SGRLTAISVKALPFHTLWL--HELE-VPAFASLCITSANRHVICCL-VDGHVVALD-S--SGSIIW--RCRTGGPI---- 687 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~--~~~~-~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~--~g~~~w--~~~~~~~~---- 687 (829)
++.+..|+++. +|+.... .... ........+.++++.+|+.+ .++.+.+++ . +|+... .......-
T Consensus 161 ~~~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 161 SDKVYVYNVSD-AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTEEEEEEECT-TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCEEEEEEECC-CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 67799999882 2543321 1111 11223456777788788764 467788877 3 465421 11111100
Q ss_pred eecCcccccCCC-eEEEEee-CCeEEEEeCC-CCcEE--EEEecCCccccccccccccccccccccCCCcEEEEEccC-C
Q 003327 688 FAGPCTSFALPS-QVLICSR-NGSIYSFEQE-SGNLL--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS-G 761 (829)
Q Consensus 688 ~~~~~~~~~~~~-~i~~~t~-~g~l~~~d~~-tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-G 761 (829)
.....+....++ .+|+... ++.|..|+.. +|++. ..............+ ..++.++|+++.+ +
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-----------DPTEAFVVVVNQNTD 308 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-----------CTTSSEEEEEETTTT
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-----------CCCCCEEEEEEcCCC
Confidence 000011223344 5777654 7889999976 34332 233321111111111 2236778887754 7
Q ss_pred cEEEEEee
Q 003327 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.+.+|+.+
T Consensus 309 ~v~v~~~d 316 (347)
T 3hfq_A 309 NATLYARD 316 (347)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 78888554
No 229
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.01 E-value=6.8e-08 Score=112.80 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=114.3
Q ss_pred EEEecCCCcEEEEECCCCcE--EEEEEcCC----------------ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003327 489 LFVGSHSHKFICADAKRSSV--LWEIKLEG----------------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~--~w~~~~~~----------------~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
++.++.++ | .||..||+. .-.+.... ....+..++++ +.+++. .++.|+.||..+|+.
T Consensus 38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~ 113 (706)
T 2z3z_A 38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV 113 (706)
T ss_dssp EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE
T ss_pred EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCce
Confidence 33344555 8 999999986 33222210 12345677778 666665 479999999999987
Q ss_pred EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----CeEEEeeccCCc-c-------------cccceeecC
Q 003327 551 YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YRCVYKLPCGGS-I-------------FGSPAIDEV 611 (829)
Q Consensus 551 ~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~~~w~~~~~~~-~-------------~~~~~~~~~ 611 (829)
........ ....+.+++++..|++. .++.|+.||..+ |+.......+.. + ...+.++++
T Consensus 114 ~~l~~~~~-~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD 191 (706)
T 2z3z_A 114 TYLFDTNE-ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK 191 (706)
T ss_dssp EEEECCTT-CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred EEccCCcc-cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence 65443322 23456677777777774 678999999998 877654433322 1 256677887
Q ss_pred CCEEEEEe---------------------------------cCCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecC
Q 003327 612 HDVLYVAS---------------------------------TSGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSAN 656 (829)
Q Consensus 612 ~~~l~v~t---------------------------------~~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~ 656 (829)
+..|++++ .+..|+.||+++ |+....... .........+++++
T Consensus 192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEECCCCSCTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEeeccCCCCceeEeeEEEECCC
Confidence 88888776 335789999887 765544322 12223566777888
Q ss_pred CEEEEEeeCC-----eEEEEc-CCCC
Q 003327 657 RHVICCLVDG-----HVVALD-SSGS 676 (829)
Q Consensus 657 ~~l~~~~~~g-----~i~~~d-~~g~ 676 (829)
..+++++.+. .|+.+| .+|+
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 8888877665 899999 7873
No 230
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.98 E-value=1.3e-07 Score=99.11 Aligned_cols=232 Identities=8% Similarity=0.067 Sum_probs=132.9
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEE
Q 003327 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVY 594 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w 594 (829)
..+.+..++..+++++.++.|++||.++|+................+++ ++.+|+++.. +.|+.||.++++...
T Consensus 48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 3566666655444566788999999998887643322222233334443 4567777654 489999998887542
Q ss_pred eec--cCCcccccceeecCCCEEEEEecC-------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-e
Q 003327 595 KLP--CGGSIFGSPAIDEVHDVLYVASTS-------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-V 664 (829)
Q Consensus 595 ~~~--~~~~~~~~~~~~~~~~~l~v~t~~-------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~ 664 (829)
... ........+.+++ ++.+|+++.. +.|+.++.++ ++...... .........+.++++.+|++. .
T Consensus 127 ~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQ-NISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp EECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEE-EESSEEEEEECTTSSEEEEEEGG
T ss_pred EEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC--CEEEEeec-CCCcccceEECCCCCEEEEEeCC
Confidence 222 1122233445555 4678888763 5788888765 43322111 111123445566667788775 4
Q ss_pred CCeEEEEc-C-CCCEEEEee------cCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCc------
Q 003327 665 DGHVVALD-S-SGSIIWRCR------TGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDP------ 729 (829)
Q Consensus 665 ~g~i~~~d-~-~g~~~w~~~------~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~------ 729 (829)
++.|++++ . +|..+..+. ..+. .....+..+.++.+|+++. ++.|++||+ +|+.+..+..+..
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~ 280 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 280 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccccc
Confidence 68899999 4 455433221 1110 0111133556788999975 478999998 5777666654432
Q ss_pred cccccccccccccccccccCCCcEEEEEccCC------cEEEEEee
Q 003327 730 ITASAYIDEHLQLKLESCLSIDRLVCICTSSG------SIHILRVN 769 (829)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G------~l~~~d~~ 769 (829)
........ .+++.+|+++.+| .|+.++..
T Consensus 281 ~~~~~~~~-----------~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 281 RSTHPQFI-----------PGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp BCCEEEEC-----------TTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CcceEEEC-----------CCCCEEEEEeCccCCCCCceEEEEecc
Confidence 11111111 2256888887764 57777654
No 231
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.98 E-value=4.6e-07 Score=96.98 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=127.1
Q ss_pred EECCCCcEEEEEEcCCceeec-----eEEeeCCcEEEEEEe-CC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003327 501 ADAKRSSVLWEIKLEGRIECS-----AAVLADFSQVVVGCY-KG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~~~~~~-----~~~~~~~~~v~vg~~-dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
+|..+|.....+..+...... +.+++|+..|++.+. ++ .|+.+|+.+|+.......+......+.+.+++..
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 466666655444333222222 678899988888876 55 4999999999887654433333335667888888
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEE----------------------ecCCeEEEEE
Q 003327 573 IWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVA----------------------STSGRLTAIS 628 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~----------------------t~~g~l~~~~ 628 (829)
|++.+.++.++.||..+|+............. ....+.++..++.. ..++.|+.+|
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 99988888999999999987655544332221 11223333444321 1235789999
Q ss_pred ccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeC------CeEEEEcCCCCEEEEeecCC--ceeecCcccccCCC
Q 003327 629 VKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVD------GHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPS 699 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~------g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~ 699 (829)
+.+ |+....... ......+.+++ +++.+++.... ..|+.+|.++.......... .....+....+ +.
T Consensus 175 ~~~--g~~~~l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd-g~ 250 (388)
T 3pe7_A 175 LKT--GESTVILQE-NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPD-GS 250 (388)
T ss_dssp TTT--CCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTT-SS
T ss_pred CCC--CceEEeecC-CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCC-CC
Confidence 887 654433322 22235667777 77777666542 37888883333333332222 11222222222 22
Q ss_pred eE-EEEeeCC----eEEEEeCCCCcEEE
Q 003327 700 QV-LICSRNG----SIYSFEQESGNLLW 722 (829)
Q Consensus 700 ~i-~~~t~~g----~l~~~d~~tG~~~w 722 (829)
.| |+...++ .|+.||..+|+...
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEE
Confidence 35 4444433 39999999998644
No 232
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.96 E-value=2.2e-07 Score=97.93 Aligned_cols=276 Identities=13% Similarity=0.095 Sum_probs=145.2
Q ss_pred EEEEEEeCC----E--EEEEEcCCCcEEEEE-ecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEE--eec
Q 003327 530 QVVVGCYKG----K--IYFLDYLTGDIYWTF-QTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVY--KLP 597 (829)
Q Consensus 530 ~v~vg~~dg----~--l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w--~~~ 597 (829)
.+|+|++.+ . ++.+|.++|+..... ...........+++++. +|+.+. ++.|+.||..+|+... ...
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 578887642 3 667777788875421 11112223344555444 887765 4789999998887432 222
Q ss_pred cCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCce--EEEeeccCC---------cceeeeeeeecCCEEEEEee-
Q 003327 598 CGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFH--TLWLHELEV---------PAFASLCITSANRHVICCLV- 664 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~--~~w~~~~~~---------~~~~s~~~~~~~~~l~~~~~- 664 (829)
........+.+++++..+|++. .++.+..|++.. +|. .+....... .......+.+++. +|+...
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 2233334556777778899888 578899999853 133 333332211 1123456666766 666554
Q ss_pred CCeEEEEc-C-CCCEEEEe--ec--CCceeecCcccccCCC-eEEEEe-eCCeEEEEeCC--CCcEEEE--Eec-CCccc
Q 003327 665 DGHVVALD-S-SGSIIWRC--RT--GGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQE--SGNLLWE--YSV-GDPIT 731 (829)
Q Consensus 665 ~g~i~~~d-~-~g~~~w~~--~~--~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~--tG~~~w~--~~~-~~~~~ 731 (829)
++.+.+|+ . +|++.... .. +..... +....++ .+|+.+ .++.+..|+.. +|++... ... +....
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~---~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH---LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEE---EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCce---EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 66799999 5 67654221 11 111111 1223344 477754 46777777655 5665322 111 11000
Q ss_pred cccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEE
Q 003327 732 ASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVF 808 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 808 (829)
... .........++.++|+.. .++.|.+|+.+.... ..........+.......+ ++..||
T Consensus 238 ~~~------~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~----------~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 238 AHN------GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH----------LTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp SCC------EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC----------EEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred CCC------cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc----------EEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 000 000011123466777655 478899999863210 1222222222222222222 345788
Q ss_pred EeeeC-CeEEEE--eccccccc
Q 003327 809 VGCRD-DYIYCI--ALETQHLE 827 (829)
Q Consensus 809 vg~~~-g~l~~~--d~~tg~~~ 827 (829)
+++.+ +.+..| |.++|+++
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEE
Confidence 88765 777777 77788764
No 233
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.95 E-value=1e-07 Score=102.32 Aligned_cols=146 Identities=6% Similarity=-0.045 Sum_probs=93.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEE-----cCCceeeceEEee--------CCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIK-----LEGRIECSAAVLA--------DFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~--------~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
...+..++.|+.|..||..+++...... .+...+.+..+++ ++..|..++.|++|..||..++..+.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 4568888999999999999887654332 2333444556654 66788999999999999998877665
Q ss_pred EEecCCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEeeccCC-------------------------cccccc
Q 003327 553 TFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCGG-------------------------SIFGSP 606 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-------------------------~~~~~~ 606 (829)
....+.....+..+.+++ ..+.+++.|+.++.||..+++......... ......
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 544333333345566554 468889999999999999987654332110 001111
Q ss_pred ee-ecCCCEEEEEecCCeEEEEEccC
Q 003327 607 AI-DEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 607 ~~-~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+ ..++..++.++.++.+..||+.+
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC--
T ss_pred eeecCCCCEEEEEeCCCCEEEEECcc
Confidence 12 23456777788888888888765
No 234
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.93 E-value=1.6e-06 Score=91.72 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=147.5
Q ss_pred CeEEEEecCC----CcEE--EEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC----CEEEEE--EcCCCcEEE-
Q 003327 486 DIYLFVGSHS----HKFI--CADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK----GKIYFL--DYLTGDIYW- 552 (829)
Q Consensus 486 ~~~l~igs~~----g~l~--~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~--d~~tG~~~w- 552 (829)
..++|+|+.. +.|+ .+|..+|+.......+........+++++..||+++.+ +.+..| +..+|+...
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 4578898753 3444 45678888765443322222356788898899999875 677655 444576543
Q ss_pred -EEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEee----ccCC-cc---------cccceeecCCCEEE
Q 003327 553 -TFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKL----PCGG-SI---------FGSPAIDEVHDVLY 616 (829)
Q Consensus 553 -~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~----~~~~-~~---------~~~~~~~~~~~~l~ 616 (829)
.....+.......+ +++.+|+++ .++.+..|+..+...+... ...+ .. ...+.+++++..+|
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 23322222222223 557777776 4678999998653322111 1111 00 12356777677788
Q ss_pred EEec-CCeEEEEEccCCCc----e-EE-----Eeecc-CCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEE--
Q 003327 617 VAST-SGRLTAISVKALPF----H-TL-----WLHEL-EVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWR-- 680 (829)
Q Consensus 617 v~t~-~g~l~~~~~~~~~g----~-~~-----w~~~~-~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~-- 680 (829)
++.. ++.+..|+++...+ + .. ..... .........+.+++..+|+.+ .++.|.+|+ .+|++...
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 7765 67888898775433 2 11 11111 112224566777888888887 578899999 77755322
Q ss_pred eecCCceeecC-cccccCCC-eEEEEeeC--CeEEEEeC--CCCcEEE--EEecCCccccccccccccccccccccCCCc
Q 003327 681 CRTGGPIFAGP-CTSFALPS-QVLICSRN--GSIYSFEQ--ESGNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 681 ~~~~~~~~~~~-~~~~~~~~-~i~~~t~~--g~l~~~d~--~tG~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
......-...+ .+....++ .+|++..+ +.|..|+. .+|++.. ....+..... .. ...++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~-~~-----------~spdg~ 318 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRN-FI-----------ITPNGK 318 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCE-EE-----------ECTTSC
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCce-EE-----------ECCCCC
Confidence 22111000000 11222344 57777655 67888776 4677432 3332111111 11 122367
Q ss_pred EEEEEc-cCCcEEEEEee
Q 003327 753 LVCICT-SSGSIHILRVN 769 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~ 769 (829)
++++++ .++.|.+|+.+
T Consensus 319 ~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 788877 56778886554
No 235
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.93 E-value=1e-06 Score=93.41 Aligned_cols=272 Identities=9% Similarity=0.016 Sum_probs=154.6
Q ss_pred eEEEEecCC--CcEEE--EECCCCcEEEE--EEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcC-CCcEEEEEe--c
Q 003327 487 IYLFVGSHS--HKFIC--ADAKRSSVLWE--IKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQ--T 556 (829)
Q Consensus 487 ~~l~igs~~--g~l~~--~d~~tg~~~w~--~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~-tG~~~w~~~--~ 556 (829)
..+|+|+.. +.|+. +|..+|++.-. ..... .......++++++.+|+++.+ .+..||.. +|++..... .
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 468999874 45665 45678876422 21121 122356678888899999887 89999987 888754332 2
Q ss_pred CCeeeeeeeeecCCCE--EEEec-------------cCCeEEEEEcC-CCeEEEeecc----CCcccccceeecCCCEEE
Q 003327 557 CGEVKCQPVVDAPRQL--IWCGS-------------HDHNLYALDFR-NYRCVYKLPC----GGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~--i~~gs-------------~~g~l~~~d~~-tg~~~w~~~~----~~~~~~~~~~~~~~~~l~ 616 (829)
.+. .....+++++.. +++++ .++.+..|+.. +|++.-.... .......+.+++++..+|
T Consensus 82 ~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 82 GGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 222 222344555553 44543 57888899886 5765433321 223334566777777888
Q ss_pred EEec-CCeEEEEEcc-CCCceEE--EeeccC--CcceeeeeeeecCCEEEEEee-CCeEEEEc---CCCCEEE---Eeec
Q 003327 617 VAST-SGRLTAISVK-ALPFHTL--WLHELE--VPAFASLCITSANRHVICCLV-DGHVVALD---SSGSIIW---RCRT 683 (829)
Q Consensus 617 v~t~-~g~l~~~~~~-~~~g~~~--w~~~~~--~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d---~~g~~~w---~~~~ 683 (829)
++.. ++.|+.|+.+ + |+.. ...... ........+.+++..+|+++. ++.+.+++ .+|++.. ....
T Consensus 161 ~~~~~~~~v~~~~~~~~--g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 161 SADLTANKLWTHRKLAS--GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEETTTTEEEEEEECTT--SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEcCCCCEEEEEEECCC--CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 8764 5789999988 5 6543 222211 222345567778889988875 56777775 3677532 1221
Q ss_pred -CCce---e-------ecCccc-ccCCC-eEEEEeeCC------eEEEEeCC-CCcEEEE---EecC-Cccccccccccc
Q 003327 684 -GGPI---F-------AGPCTS-FALPS-QVLICSRNG------SIYSFEQE-SGNLLWE---YSVG-DPITASAYIDEH 739 (829)
Q Consensus 684 -~~~~---~-------~~~~~~-~~~~~-~i~~~t~~g------~l~~~d~~-tG~~~w~---~~~~-~~~~~~~~~~~~ 739 (829)
.... . ....+. ...++ .+|+++.+. .|..|+.. +|++... .... .......+...
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~- 317 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC- 317 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC-
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC-
Confidence 1100 0 001112 22344 678776533 78899875 6876532 2111 11111111110
Q ss_pred cccccccccCCCcEEEEEccC-CcEEEEEeecC
Q 003327 740 LQLKLESCLSIDRLVCICTSS-GSIHILRVNLD 771 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~~-G~l~~~d~~~~ 771 (829)
. . +++++++++.+ +.|.+|+.+.+
T Consensus 318 ------~-~-dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 ------P-W-SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------T-T-CTTEEEEECSSSCEEEEEEEETT
T ss_pred ------C-c-CCCEEEEEEcCCCeEEEEEEchh
Confidence 0 0 37888888764 88999988743
No 236
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.93 E-value=2.8e-07 Score=107.58 Aligned_cols=266 Identities=10% Similarity=0.037 Sum_probs=156.3
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-----CcEEEEEecCCe-e
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-----GDIYWTFQTCGE-V 560 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-----G~~~w~~~~~~~-~ 560 (829)
+.+.+++ ++.++.||..+|+........ .....+.++++++.|++. .++.|+.||..+ |+.+.....+.. +
T Consensus 93 ~~~~~~~-~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 93 GLVVLFT-QGGLVGFDMLARKVTYLFDTN-EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TEEEEEE-TTEEEEEETTTTEEEEEECCT-TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CeEEEEE-CCEEEEEECCCCceEEccCCc-ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 5555543 488999999998875443332 234577899998888774 689999999988 877643222211 1
Q ss_pred -------------eeeeeeecCCCEEEEec---------------------------------cCCeEEEEEcCCCeEEE
Q 003327 561 -------------KCQPVVDAPRQLIWCGS---------------------------------HDHNLYALDFRNYRCVY 594 (829)
Q Consensus 561 -------------~~~~~~~~~~~~i~~gs---------------------------------~~g~l~~~d~~tg~~~w 594 (829)
...+.+++++..|++++ .+..|+.||.++|+..+
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 24566777788888776 33579999999998776
Q ss_pred eecc--CCcccccceeecCCCEEEEEecCC-----eEEEEEccCCCc-eEEEeeccCCc----ceeeeeeee--cCCEEE
Q 003327 595 KLPC--GGSIFGSPAIDEVHDVLYVASTSG-----RLTAISVKALPF-HTLWLHELEVP----AFASLCITS--ANRHVI 660 (829)
Q Consensus 595 ~~~~--~~~~~~~~~~~~~~~~l~v~t~~g-----~l~~~~~~~~~g-~~~w~~~~~~~----~~~s~~~~~--~~~~l~ 660 (829)
.... .......+.+++++..|++++.++ .|+.||+.+ | ........... ....+.+++ ++..++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET--GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT--CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC--CceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 5432 223345566777778888877664 899999887 6 32221111111 113345666 666777
Q ss_pred EEeeCCeEEEE--cCCCCEEEEeecCC-ceeecCcccccCCCeEEEEee-CC----eEEEEeCCCCcEEEEEecCCcccc
Q 003327 661 CCLVDGHVVAL--DSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSR-NG----SIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 661 ~~~~~g~i~~~--d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~-~g----~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
++..++.+.++ +.+|+.+..+..+. .+........ .++.|++.+. ++ .|+.+|..+++.. .+.....+..
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 405 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTK-DLTPESGMHR 405 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESCCSSSEEE
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCce-eccCCCceEE
Confidence 77666654444 44566554443322 1221111111 2345665544 43 7999998887632 2121222211
Q ss_pred ccccccccccccccccCCCcEEEEEccC----CcEEEEEeecC
Q 003327 733 SAYIDEHLQLKLESCLSIDRLVCICTSS----GSIHILRVNLD 771 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G~l~~~d~~~~ 771 (829)
+. ...++..+++...+ +.|++||..++
T Consensus 406 -~~-----------~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 406 -TQ-----------LSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -EE-----------ECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred -EE-----------ECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 11 12235555554333 45999998765
No 237
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.92 E-value=6.1e-07 Score=91.55 Aligned_cols=223 Identities=9% Similarity=-0.081 Sum_probs=133.3
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecC-CeeeeeeeeecCC
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTC-GEVKCQPVVDAPR 570 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~-~~~~~~~~~~~~~ 570 (829)
+.++.|+.||..+++.......... ..++.+++++..+++++ ++.|+.||..+ ++........ ......+.+.+++
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3567899999999988755544333 45778888988888876 88999999999 8776544333 1334456677777
Q ss_pred CEEEEecc----CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeeccCCc
Q 003327 571 QLIWCGSH----DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 571 ~~i~~gs~----~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
..+++++. ...|+.++..+++... +..... ...+.+.+++..++ .+..++.+..|+.+..+++.. .......
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 173 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTHGEG 173 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE-CCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCSSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE-eecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-EcccCCC
Confidence 78888763 3578888887776432 222222 33456666667666 566677655555432224433 2222223
Q ss_pred ceeeeeeeecCCEEEEEee-CCeEEEEc--CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-----------CeEE
Q 003327 646 AFASLCITSANRHVICCLV-DGHVVALD--SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-----------GSIY 711 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~-~g~i~~~d--~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-----------g~l~ 711 (829)
....+.+.+++..+++++. ++.+.+++ .++.....+.........+.... .+..+++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 3355667777777777653 55555444 24444333332222111111111 23456666554 4699
Q ss_pred EEeCCCCcEE
Q 003327 712 SFEQESGNLL 721 (829)
Q Consensus 712 ~~d~~tG~~~ 721 (829)
.||.++++..
T Consensus 253 ~~d~~~~~~~ 262 (297)
T 2ojh_A 253 LMDMDGGNVE 262 (297)
T ss_dssp EEETTSCSCE
T ss_pred EEecCCCCce
Confidence 9999988764
No 238
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.90 E-value=3.2e-07 Score=107.72 Aligned_cols=232 Identities=11% Similarity=0.048 Sum_probs=144.3
Q ss_pred eeceEEeeCCcEEEEEEe-CC-----EEEEEEcCCCcEEEEEecCC------------------------eeeeeeeeec
Q 003327 519 ECSAAVLADFSQVVVGCY-KG-----KIYFLDYLTGDIYWTFQTCG------------------------EVKCQPVVDA 568 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~-dg-----~l~~~d~~tG~~~w~~~~~~------------------------~~~~~~~~~~ 568 (829)
..++.+++||..|++++. ++ .|+.||..+|+......... .....+.+++
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 346788889999998887 77 89999999998766554321 1134567777
Q ss_pred CCCEEEEeccCCeEEEEEcCCC---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003327 569 PRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
++..|++++. +.|+.||..+| +.. .+.........+.+++++..|++++ ++.|+.||+.+ |+..........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~--g~~~~~~~~~~~ 193 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS--GRQMQLTADGST 193 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT--TEEEECCCCCCS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC--CCEEEeccCCcc
Confidence 8888888775 89999999988 443 2322333445677888778787776 56899999987 665433222211
Q ss_pred -c---------------eeeeeeeecCCEEEEEeeCC---------------------------------eEEEEc-CC-
Q 003327 646 -A---------------FASLCITSANRHVICCLVDG---------------------------------HVVALD-SS- 674 (829)
Q Consensus 646 -~---------------~~s~~~~~~~~~l~~~~~~g---------------------------------~i~~~d-~~- 674 (829)
. ..++.+++++..+++++.++ .|+.+| .+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 24566778888888887654 778888 66
Q ss_pred CCEEEEeec--CCceeecCcccccCCCeEEEEee-----CCeEEEEeCCCCcEEEEEecCCcc----ccccccccccccc
Q 003327 675 GSIIWRCRT--GGPIFAGPCTSFALPSQVLICSR-----NGSIYSFEQESGNLLWEYSVGDPI----TASAYIDEHLQLK 743 (829)
Q Consensus 675 g~~~w~~~~--~~~~~~~~~~~~~~~~~i~~~t~-----~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~~~~~~~ 743 (829)
++....... .......... -.+..|++.+. +..|+.||..+|+........... ...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-------- 343 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR-------- 343 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE--------
T ss_pred CceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE--------
Confidence 765433211 1111111111 12345665543 457999999999876544332211 01111
Q ss_pred cccccCCCcEEEEEccCCcEEEEEe
Q 003327 744 LESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
...++..++++..+|.+.+|..
T Consensus 344 ---~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 344 ---FLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp ---ECTTSCEEEEECTTSSCEEEEE
T ss_pred ---ECCCCeEEEEecCCCccEEEEE
Confidence 1223567788888885444443
No 239
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.88 E-value=1.1e-06 Score=107.05 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCCeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.|...+. +.|+.||..+|+.. .+..+.....++.+++||..|+..+.+ ..|+.||..+|+.. .+..+....
T Consensus 26 ~iaf~~~-~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~-~lt~~~~~~ 102 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGKS 102 (1045)
T ss_dssp EEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEEE
T ss_pred EEEEEEC-CcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeE-EcccCCCcc
Confidence 4444443 57999999888754 444455556788999999988877643 37999999888753 344344333
Q ss_pred -------eeeeeecCCCEEEEeccC------CeEEEEEcCCCeEE
Q 003327 562 -------CQPVVDAPRQLIWCGSHD------HNLYALDFRNYRCV 593 (829)
Q Consensus 562 -------~~~~~~~~~~~i~~gs~~------g~l~~~d~~tg~~~ 593 (829)
..+.+++++..+++++.+ ..|+.+|..+|+..
T Consensus 103 ~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 147 (1045)
T ss_dssp ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred cccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE
Confidence 566777766666666533 46999998877654
No 240
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.87 E-value=9.6e-07 Score=94.47 Aligned_cols=232 Identities=10% Similarity=0.016 Sum_probs=134.8
Q ss_pred CCeEEEEecC-CC--cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003327 485 SDIYLFVGSH-SH--KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~-~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++..|+..+. ++ .|+.+|+.+|+.......+......+.+++++..|++...++.|+.||..+|+....+..+....
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 125 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV 125 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence 3444555554 55 49999999998765444333332356789999999999888899999999998876555544332
Q ss_pred ee--eeeecCCCEEEE----------------------eccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEE
Q 003327 562 CQ--PVVDAPRQLIWC----------------------GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLY 616 (829)
Q Consensus 562 ~~--~~~~~~~~~i~~----------------------gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~ 616 (829)
.. ....+++..++. ...+..|+.+|..+|+........ .....+.+++ ++..|+
T Consensus 126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~ 204 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVA 204 (388)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEE
T ss_pred cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEE
Confidence 21 122334444432 123467999999999766544332 2335566766 666665
Q ss_pred EEecC------CeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CC----eEEEEc-CCCCEEEEee
Q 003327 617 VASTS------GRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DG----HVVALD-SSGSIIWRCR 682 (829)
Q Consensus 617 v~t~~------g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g----~i~~~d-~~g~~~w~~~ 682 (829)
+.... ..|+.+|.++ +.. ....... .....+.+++++..+++.+. ++ .|+.+| .+|+......
T Consensus 205 ~~~~~~~~~~~~~l~~~d~~~--~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 205 FCHEGPHDLVDARMWLINEDG--TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp EEECSCTTTSSCSEEEEETTS--CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred EEEecCCCCCcceEEEEeCCC--Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence 55542 3788898775 332 2222222 12345677778876755443 22 399999 8887533222
Q ss_pred cCCc--eeecC---cccccCCCeEEEE---------eeCCeEEEEeCCCCcEE
Q 003327 683 TGGP--IFAGP---CTSFALPSQVLIC---------SRNGSIYSFEQESGNLL 721 (829)
Q Consensus 683 ~~~~--~~~~~---~~~~~~~~~i~~~---------t~~g~l~~~d~~tG~~~ 721 (829)
.... ....+ ....+ +..|++. ..+..|+.||..+|+..
T Consensus 282 ~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGD-GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp ECCEEEEEECTTSSEEEEE-ECCC------------CCCCEEEEEETTTTEEE
T ss_pred CCCceeeeecCCCCeEccC-CCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 2220 00101 11111 1223332 34568999999988764
No 241
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.87 E-value=5.1e-06 Score=92.62 Aligned_cols=289 Identities=13% Similarity=0.092 Sum_probs=172.3
Q ss_pred cccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEe----eCCcEEEEEEe
Q 003327 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVL----ADFSQVVVGCY 536 (829)
Q Consensus 463 ~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~----~~~~~v~vg~~ 536 (829)
+++.++.++.... -+.++.++.++|+++.++.|..||+. +++...+...+... ....++ ++++++|++++
T Consensus 188 ~v~~~i~~g~~p~---~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P-~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 188 EIKTVLDTGYAVH---ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-RSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp CEEEEEECSSCEE---EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-EEEEECCSTTCTTTEEEEEEE
T ss_pred eEEEEEeCCCCcc---ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC-ceeEEccccCCCCCEEEEEEc
Confidence 3444555544322 23345567899999999999999995 88988887766543 356677 48889999877
Q ss_pred C-CEEEEEEcCCCcEEEEEecCCe----------eeeeeee-ecCCCEEEE-eccCCeEEEEEcCCCeEE--EeeccCCc
Q 003327 537 K-GKIYFLDYLTGDIYWTFQTCGE----------VKCQPVV-DAPRQLIWC-GSHDHNLYALDFRNYRCV--YKLPCGGS 601 (829)
Q Consensus 537 d-g~l~~~d~~tG~~~w~~~~~~~----------~~~~~~~-~~~~~~i~~-gs~~g~l~~~d~~tg~~~--w~~~~~~~ 601 (829)
. +.+..+|..|.+++.++.+.+. .....++ ...+..+++ -...|.|..+|..+.+.+ ..+..+ .
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~-~ 342 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-R 342 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-S
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc-c
Confidence 4 8899999999999988776431 1111222 222233333 344577888887664322 122111 1
Q ss_pred ccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeecc-CC-cce-eeee-eeecCCEEEEEee--CCeEEEEc-C
Q 003327 602 IFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL-EV-PAF-ASLC-ITSANRHVICCLV--DGHVVALD-S 673 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~-~~-~~~-~s~~-~~~~~~~l~~~~~--~g~i~~~d-~ 673 (829)
..-...++.++.++|++. .++.|.++|.++ ++....... .. +.. .... ..++++.+|+.+. ++.|.++| .
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCC--CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 112234566677888876 467899999988 888887766 32 211 1112 3445678887653 57899999 5
Q ss_pred C-------CCEEEEeecCCceeecCccc-ccCCCeEEEEee-------CCeEEEEeCCCC-----cEEEEE-ec------
Q 003327 674 S-------GSIIWRCRTGGPIFAGPCTS-FALPSQVLICSR-------NGSIYSFEQESG-----NLLWEY-SV------ 726 (829)
Q Consensus 674 ~-------g~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~t~-------~g~l~~~d~~tG-----~~~w~~-~~------ 726 (829)
+ -+.+.+....+.- ..++. .-....+|+.+. .+.|..||..+. ...++. ..
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCccccCEEEEEEecCCCC--CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 5 3444444443210 11111 112457999873 358999998776 222211 11
Q ss_pred C--CccccccccccccccccccccCCCcEEEEEcc-----CCcEEEEEeecC
Q 003327 727 G--DPITASAYIDEHLQLKLESCLSIDRLVCICTS-----SGSIHILRVNLD 771 (829)
Q Consensus 727 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~G~l~~~d~~~~ 771 (829)
+ ..-...+. ...++..+|++.. ++.|.++|.++.
T Consensus 499 ~~~~~~~~~~~-----------~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 499 TEGQPRVVQGE-----------FNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CSSCCEEEEEE-----------ECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcceEeee-----------ECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 0 00000011 1234788998843 688999998865
No 242
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.85 E-value=9.6e-08 Score=111.85 Aligned_cols=185 Identities=9% Similarity=-0.056 Sum_probs=120.0
Q ss_pred ecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeCCcEEEEEEeC---------CEEEEEEcCCCcEEEEEecCCe
Q 003327 492 GSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLADFSQVVVGCYK---------GKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 492 gs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~v~vg~~d---------g~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.+.+|.|+.||+.+|+....+..+.. ...++.+++|+..|++++.+ +.++.||..+|+.. .+.....
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~ 111 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEV 111 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTC
T ss_pred EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCcc
Confidence 36788999999999988765554332 13467899999988888653 78999999999862 2322211
Q ss_pred ---eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc------------------cccceeecCCCEEEEE
Q 003327 560 ---VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI------------------FGSPAIDEVHDVLYVA 618 (829)
Q Consensus 560 ---~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~------------------~~~~~~~~~~~~l~v~ 618 (829)
....+.+++++..|.+++. +.|+.||..+|+.......+... ...+.+++++..|+++
T Consensus 112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 1345677777777777765 78999999998776544332211 1356677777788776
Q ss_pred ecCC----------------------------------eEEEEEccCCCceEEEeeccC------CcceeeeeeeecCCE
Q 003327 619 STSG----------------------------------RLTAISVKALPFHTLWLHELE------VPAFASLCITSANRH 658 (829)
Q Consensus 619 t~~g----------------------------------~l~~~~~~~~~g~~~w~~~~~------~~~~~s~~~~~~~~~ 658 (829)
+.++ .|+.||+.+ ++........ ......+.+++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 6432 688888876 5432222221 122345667777666
Q ss_pred EEEEeeC----CeEEEEc-CCCCEEEE
Q 003327 659 VICCLVD----GHVVALD-SSGSIIWR 680 (829)
Q Consensus 659 l~~~~~~----g~i~~~d-~~g~~~w~ 680 (829)
+++.+.. ..|+.+| .+|+....
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 6555432 4688889 78876543
No 243
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=98.85 E-value=4.3e-09 Score=85.50 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 285 TKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+.+++++.++++|+++|+. +.++++++||++|+|||.+++|...| .++...+|++||+..|+.++.+.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~ 86 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL 86 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 34567899999999999998 77999999999999999999998765 47888999999999999998764
No 244
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.85 E-value=3.3e-07 Score=94.89 Aligned_cols=228 Identities=10% Similarity=0.083 Sum_probs=131.9
Q ss_pred ceEEeeCCcEEEEE--------EeCCEEEEEEcCCCcEEEEEe-----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEc
Q 003327 521 SAAVLADFSQVVVG--------CYKGKIYFLDYLTGDIYWTFQ-----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF 587 (829)
Q Consensus 521 ~~~~~~~~~~v~vg--------~~dg~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~ 587 (829)
.+++..+ +.+|++ +.++.|+.||..+|+...... .... .....++.+++.+|+++..+.|+.||.
T Consensus 22 ~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-~~~i~~~~~~g~l~v~~~~~~l~~~d~ 99 (314)
T 1pjx_A 22 GPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGI-PAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp EEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECC-EEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCC-CceEEEecCCCcEEEEECCCCEEEEeC
Confidence 4555544 456666 678899999988888753221 1111 222334433388999887778999998
Q ss_pred CCCeEEEe-eccC-C---cccccceeecCCCEEEEEecC----------------CeEEEEEccCCCceEEEeeccCCcc
Q 003327 588 RNYRCVYK-LPCG-G---SIFGSPAIDEVHDVLYVASTS----------------GRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 588 ~tg~~~w~-~~~~-~---~~~~~~~~~~~~~~l~v~t~~----------------g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
+ |+.... .... . .......++. ++.+|+++.. +.|+.++.+ |+........ ..
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~-~~ 173 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQVDTAF-QF 173 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEEEEEE-SS
T ss_pred C-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC---CCEEEeccCC-CC
Confidence 8 877644 3221 1 1123344554 5678888753 568888765 4433221111 11
Q ss_pred eeeeeee----ecCCEEEEEe-eCCeEEEEc-C-CCCEE----E-EeecC--CceeecCcccccCCCeEEEEee-CCeEE
Q 003327 647 FASLCIT----SANRHVICCL-VDGHVVALD-S-SGSII----W-RCRTG--GPIFAGPCTSFALPSQVLICSR-NGSIY 711 (829)
Q Consensus 647 ~~s~~~~----~~~~~l~~~~-~~g~i~~~d-~-~g~~~----w-~~~~~--~~~~~~~~~~~~~~~~i~~~t~-~g~l~ 711 (829)
.....+. .+++.+|++. .++.|++++ . +|+.. + .+... .... .+..+.++.+|+++. ++.|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE---EEEEBTTCCEEEEEETTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC---ceEECCCCCEEEEEcCCCEEE
Confidence 1233444 4555788775 468899998 4 56532 1 11111 1111 123456789999974 67899
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeec
Q 003327 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNL 770 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~ 770 (829)
+||+++|+....+..+.........+ .+++.+|+++. ++.|+.++...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~-----------~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFK-----------PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEEC-----------TTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEEC-----------CCCCEEEEEeCCCCeEEEEeCCC
Confidence 99998888766665442221111122 12555887764 57899998763
No 245
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.84 E-value=8.9e-08 Score=103.91 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=148.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~ 562 (829)
++..+..++.|+.|. |.++++.+ +.+......+.++++| .++ .|+..+++ .+.+.. +.....
T Consensus 26 DG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~---~~~~~~~~~~~~~~~~-~~~~V~ 89 (588)
T 2j04_A 26 DGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FEN---KLDFELAQQNGLLNSQ-PVCYPR 89 (588)
T ss_dssp TSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCC---TTTTSCCCSSCSSTTS-CSCCEE
T ss_pred CCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------Ccc---eEEEEeCCCceEeecC-CCCcEE
Confidence 566777778888777 77777644 3333333456666665 233 33444433 221111 234445
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-----ccccceeecCCCEEEEEecCCeEEEEEccCCCce--
Q 003327 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-----IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-- 635 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-- 635 (829)
...+++++..|.+++.+|.++.||.++ ++-.+. +.. ...+.++++++..|++++.+|.|..||+++ +.
T Consensus 90 ~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~--~~l~ 164 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK--NSEN 164 (588)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC--CTTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC--Cccc
Confidence 566788888899999999999999543 333344 332 245677888899999999999999999987 53
Q ss_pred -----EEEeecc----CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--EEE-eecC--CceeecCcccccCCCe
Q 003327 636 -----TLWLHEL----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--IWR-CRTG--GPIFAGPCTSFALPSQ 700 (829)
Q Consensus 636 -----~~w~~~~----~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~w~-~~~~--~~~~~~~~~~~~~~~~ 700 (829)
.+..... +.....+.+.++++ +.+++.|+.++.|| .+++. +++ .... ..+.+.. .. ++.
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva---Fs-g~~ 238 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK---IV-DYK 238 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE---EE-TTE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE---EE-CCE
Confidence 2333321 22334566676655 78888899999999 65553 122 2111 1222222 22 345
Q ss_pred EEEEeeCCeEEEEeCCCCcE-EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 701 VLICSRNGSIYSFEQESGNL-LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+..++ ++.|..||..+++. ...+.....+...++.+ ..++..+.++..+|. .+|..
T Consensus 239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~----------s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNH----------EKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETT----------CSSCEEEEECSSCEE-EEEES
T ss_pred EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeee----------CCCCCEEEEEcCCCC-EEEee
Confidence 55555 79999999998888 44444333343333211 112557778888888 55554
No 246
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.83 E-value=2e-06 Score=89.90 Aligned_cols=224 Identities=15% Similarity=0.139 Sum_probs=129.1
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEec--
Q 003327 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQT-- 556 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~-- 556 (829)
.++.||+ ++.++.|+.||..+++................+..++ .+|+++.. +.|+.||.++++.......
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 4555775 6778899999999888764332222223345565554 57777654 4899999888876533221
Q ss_pred CCeeeeeeeeecCCCEEEEecc-------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEE
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSH-------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAIS 628 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~ 628 (829)
.........++ .++.+|+++. .+.|+.+|.++++....... ......+.+++++..+|++. .++.|+.|+
T Consensus 133 ~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 133 TAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp SCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred cCCcccceEEC-CCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 11222233444 3567888765 36799999887765432211 11223455666566788775 467899999
Q ss_pred ccCCCceEEEee------ccCC-cceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCc------eeecCccc
Q 003327 629 VKALPFHTLWLH------ELEV-PAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGP------IFAGPCTS 694 (829)
Q Consensus 629 ~~~~~g~~~w~~------~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~------~~~~~~~~ 694 (829)
.++. |.....+ .... .......+. .++.+|+++. ++.|.++|.+|+.+..+..... .... +.
T Consensus 211 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~--~~ 286 (333)
T 2dg1_A 211 LEDD-GVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTH--PQ 286 (333)
T ss_dssp ECTT-SSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCE--EE
T ss_pred ecCC-CcCcccccceEEEecCCCCCCCceEEC-CCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcce--EE
Confidence 8631 3222111 1111 111223333 3567888875 4789999966777666654432 1111 11
Q ss_pred ccCC-CeEEEEeeCC------eEEEEeC
Q 003327 695 FALP-SQVLICSRNG------SIYSFEQ 715 (829)
Q Consensus 695 ~~~~-~~i~~~t~~g------~l~~~d~ 715 (829)
...+ +.||+++.++ .|++++.
T Consensus 287 ~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 287 FIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp ECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 2223 5899988774 4666654
No 247
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=3.5e-07 Score=98.20 Aligned_cols=218 Identities=10% Similarity=0.055 Sum_probs=119.0
Q ss_pred EEEECCCCcEEEEEEcCCce-----eeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC
Q 003327 499 ICADAKRSSVLWEIKLEGRI-----ECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 499 ~~~d~~tg~~~w~~~~~~~~-----~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 570 (829)
..+|..+|+....+...... ...+.++++++.|+..... ..|+.+|..+|+..............+.+.+++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577777765544332211 3456788888887666443 479999998887654322222222235667778
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc-------------------ceeecCCCEEEEE-----ecCCeEEE
Q 003327 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS-------------------PAIDEVHDVLYVA-----STSGRLTA 626 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~-------------------~~~~~~~~~l~v~-----t~~g~l~~ 626 (829)
..|++.+.++.|+.+|..+|+.............. +.+.+++..+++. ..+..|+.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 88888888889999999998765544322211000 1122222322222 23457888
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeC------CeEEEEc-CCCCEEEEeecC--CceeecCccccc
Q 003327 627 ISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVD------GHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFA 696 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~------g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~ 696 (829)
+|+.+ |+....... ......+.+.+ +++.+++.+.+ ..|+.+| .+++.. ..... ......+. ..
T Consensus 173 ~d~~~--g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~--~s 246 (396)
T 3c5m_A 173 VDIET--GELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF--WI 246 (396)
T ss_dssp EETTT--CCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE--EC
T ss_pred EECCC--CcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE--EC
Confidence 99887 654433322 22234455666 45556665533 3588888 444422 22111 11111111 12
Q ss_pred CCC-eEEEEeeC-----CeEEEEeCCCCcEEE
Q 003327 697 LPS-QVLICSRN-----GSIYSFEQESGNLLW 722 (829)
Q Consensus 697 ~~~-~i~~~t~~-----g~l~~~d~~tG~~~w 722 (829)
.++ .|++.+.+ +.|+.||..+|+...
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 233 45555443 349999999987654
No 248
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.83 E-value=4.2e-07 Score=94.04 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=128.9
Q ss_pred CCeEEEEe--------cCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003327 485 SDIYLFVG--------SHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 485 ~~~~l~ig--------s~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
.++.+|++ +.++.|+.||..+|+... +.. .........+..+++.+|+++..++|+.||.+ |+..
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFE 104 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEE
Confidence 56678877 567889999998888653 222 11112234454453689999877789999987 8875
Q ss_pred EE-EecCC----eeeeeeeeecCCCEEEEeccC----------------CeEEEEEcCCCeEEEeeccCCcccccceee-
Q 003327 552 WT-FQTCG----EVKCQPVVDAPRQLIWCGSHD----------------HNLYALDFRNYRCVYKLPCGGSIFGSPAID- 609 (829)
Q Consensus 552 w~-~~~~~----~~~~~~~~~~~~~~i~~gs~~----------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~- 609 (829)
.. ..... .......++ .++.+|+++.. +.|+.+|.. |+......... .....+++
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-~~~~i~~~~ 181 (314)
T 1pjx_A 105 EIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ-FPNGIAVRH 181 (314)
T ss_dssp ECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES-SEEEEEEEE
T ss_pred EEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC-CcceEEEec
Confidence 43 22111 111223333 45678887643 579999976 76544322111 11233445
Q ss_pred ---cCCCEEEEEe-cCCeEEEEEcc-CCCceE----EE-eeccCC-cceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCC
Q 003327 610 ---EVHDVLYVAS-TSGRLTAISVK-ALPFHT----LW-LHELEV-PAFASLCITSANRHVICCL-VDGHVVALD-SSGS 676 (829)
Q Consensus 610 ---~~~~~l~v~t-~~g~l~~~~~~-~~~g~~----~w-~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~ 676 (829)
.+++.+|++. .++.|+.|+.+ + |+. .+ ...... ......++. .++.+|+++ .+++|.++| .+|+
T Consensus 182 ~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 182 MNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp CTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBS
T ss_pred ccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 5445788875 46789999976 3 432 11 111111 111223333 456888886 467899999 6687
Q ss_pred EEEEeecCC-ceeecCcccccCCCe-EEEEee-CCeEEEEeCCC
Q 003327 677 IIWRCRTGG-PIFAGPCTSFALPSQ-VLICSR-NGSIYSFEQES 717 (829)
Q Consensus 677 ~~w~~~~~~-~~~~~~~~~~~~~~~-i~~~t~-~g~l~~~d~~t 717 (829)
.+..+.... .+.. +....++. ||+++. ++.|+.++...
T Consensus 259 ~~~~~~~~~~~~~~---i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 259 PKMRIRCPFEKPSN---LHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSEEEECSSSCEEE---EEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EeEEEeCCCCCcee---EEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 665554432 1211 12234554 898875 46899998764
No 249
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.82 E-value=3.2e-07 Score=92.62 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=126.1
Q ss_pred cceEEeeCCCeEEEE-e-cCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003327 477 SPLVVLKDSDIYLFV-G-SHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 477 sp~v~~~d~~~~l~i-g-s~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
.|.-+.-+.++.+|+ + +.++.|+.||..++... ...... ......++..++ .+|+++.++.|+.||..++.. +.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC-CEEEEcCCCEEEEEeCCCceE-ee
Confidence 343333445677998 7 56788999998765532 222221 112244555554 588887788999999765543 33
Q ss_pred EecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEcc
Q 003327 554 FQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVK 630 (829)
Q Consensus 554 ~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~ 630 (829)
+...+ .......++. ++.+|++. .++.|+.+|..+................++++. ++.+|++.. ++.|+.++.+
T Consensus 102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecC
Confidence 33222 1222333443 45677764 467899998766544432222212233455555 355888765 5789999987
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecC-cccccCCCeEEEEe-eC
Q 003327 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICS-RN 707 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t-~~ 707 (829)
+ +................++.. ++.+|+++. ++.|..++.++.........+ +..+ .+..+.++.+|++. .+
T Consensus 180 ~--~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 180 S--NNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--LNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp T--CCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCS--CSCEEEEEECTTCCEEEEEGGG
T ss_pred C--CceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCC--CCCceeEEECCCCCEEEEECCC
Confidence 5 333222111111223334433 458888875 568999994444433332211 1111 12234466788775 46
Q ss_pred CeEEEEeCCCCc
Q 003327 708 GSIYSFEQESGN 719 (829)
Q Consensus 708 g~l~~~d~~tG~ 719 (829)
+.|..++....+
T Consensus 255 ~~v~~~~~~~~~ 266 (270)
T 1rwi_B 255 DRVVKLTSLEHH 266 (270)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEcCCCcc
Confidence 788888876544
No 250
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.80 E-value=6.3e-07 Score=109.34 Aligned_cols=221 Identities=10% Similarity=0.052 Sum_probs=139.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-----------ceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-----------RIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-----------~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
++..|..+ .++.|+.||..++++. .+..+. ....++.++ +++..+++++ ++.|+.++..+++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 34445444 4678999998655443 332211 123467788 8888787776 8899999998887654
Q ss_pred EEecCCe-eeeeeeeecCCCEEEEeccCCeEE-EEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003327 553 TFQTCGE-VKCQPVVDAPRQLIWCGSHDHNLY-ALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 553 ~~~~~~~-~~~~~~~~~~~~~i~~gs~~g~l~-~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
...+.. ....+.+. ++..+++++.++.++ .+|..+++..... .+......+.+++++..|++++.++.++.||++
T Consensus 332 -~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 332 -VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp -CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 222222 33445566 556677777788899 9999887765433 333344567778878899999999999999998
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC----------eEEEEc-CCCCEEEEeecCC-ceeecCcccccCC
Q 003327 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG----------HVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALP 698 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g----------~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~ 698 (829)
+ |+................+++++..+++++.++ .|+.+| .+|+ ........ .... +... ..+
T Consensus 409 t--g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~-~~~s-pdG 483 (1045)
T 1k32_A 409 T--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA-PAFD-ADS 483 (1045)
T ss_dssp T--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE-EEEC-TTS
T ss_pred C--CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC-ceEc-CCC
Confidence 7 766554433333345667788888887776543 899999 7666 33332222 1211 1111 123
Q ss_pred CeEEEEeeCCeEEEEeCC
Q 003327 699 SQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~ 716 (829)
..+++++.++....|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 457777776655555543
No 251
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.80 E-value=1.7e-06 Score=90.24 Aligned_cols=213 Identities=13% Similarity=0.093 Sum_probs=124.2
Q ss_pred cEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCc--EEEEEecC-------Ce--eeee
Q 003327 497 KFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGD--IYWTFQTC-------GE--VKCQ 563 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~--~~w~~~~~-------~~--~~~~ 563 (829)
.|+.+|..+|++...+.... ......++..++. +|+.. .++.|+.||. +|+ .+..+... +. ....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcE
Confidence 69999999999875543221 1123455666655 66654 4689999996 454 45544321 11 1233
Q ss_pred eeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCc----------ccccceeecCCCEEEEEec-CCeEEEEEcc
Q 003327 564 PVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGS----------IFGSPAIDEVHDVLYVAST-SGRLTAISVK 630 (829)
Q Consensus 564 ~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~----------~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~ 630 (829)
.+++++++.+|+.. .++.|+.|| .+|+.++.+...+. ....++++++++.+|++.. ++.|..|+++
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 44554367777776 378999999 67888877643221 1234566765588888764 6689999988
Q ss_pred CCCceEEEeeccCC--cceeeeeeeecCCEEEEEe--------eCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCC
Q 003327 631 ALPFHTLWLHELEV--PAFASLCITSANRHVICCL--------VDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALP 698 (829)
Q Consensus 631 ~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~--------~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~ 698 (829)
+ |+.+..+.... .......+.+ +.++... .+..+..++ .+|+++..+......+..| .+..+.+
T Consensus 227 ~--G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 227 T--KEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp T--CCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred C--CcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 6 77776664321 1112222322 3443332 234688899 8888877654222212222 1234446
Q ss_pred CeEEEEe-eCCeEEEEeCC
Q 003327 699 SQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 699 ~~i~~~t-~~g~l~~~d~~ 716 (829)
+.+|++. .++.|..|+..
T Consensus 303 G~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCC
Confidence 6777764 35567777643
No 252
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.79 E-value=5.3e-06 Score=87.72 Aligned_cols=275 Identities=12% Similarity=0.071 Sum_probs=144.0
Q ss_pred cEEEEEEeC----CEEEE--EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEE--cCCCeEEEe-
Q 003327 529 SQVVVGCYK----GKIYF--LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALD--FRNYRCVYK- 595 (829)
Q Consensus 529 ~~v~vg~~d----g~l~~--~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d--~~tg~~~w~- 595 (829)
..+|+|++. +.|+. +|.++|+................+++++..||+++.+ +.+..|+ ..+|+....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 368889874 35554 5667888765443322222334667777889998875 6776655 444765432
Q ss_pred -eccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEE-----eeccCC--------cceeeeeeeecCCEEE
Q 003327 596 -LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLW-----LHELEV--------PAFASLCITSANRHVI 660 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w-----~~~~~~--------~~~~s~~~~~~~~~l~ 660 (829)
....+.......+ +++.+|++.. ++.+..|++.+. |.... ...... +......+.++++.++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 2222222222233 4578888774 678999998741 32110 011000 1113456777788788
Q ss_pred EEee-CCeEEEEc-C--CC----C-E-------EEEeecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCCCCcEEE
Q 003327 661 CCLV-DGHVVALD-S--SG----S-I-------IWRCRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 661 ~~~~-~g~i~~~d-~--~g----~-~-------~w~~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~tG~~~w 722 (829)
++.. ++.+.+|+ . ++ + + ......+..... +....++ .+|+.+ .++.|..|+..+|++..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRH---LIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEE---EEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeE---EEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 7764 57788876 3 33 2 2 112222221111 1223344 588877 57899999988887643
Q ss_pred EEec--CCccccccccccccccccccccCCCcEEEEEccC--CcEEEEEeecCccccccccccccceeeeeeccCCcccc
Q 003327 723 EYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSS--GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS 798 (829)
Q Consensus 723 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (829)
.... ...-...+. ......++.++|++..+ +.|.+|+.+.. .+. ......... +....
T Consensus 248 ~~~~~~~~~~~~~~~--------~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~--------~~~~~~~~~-g~~~~ 309 (361)
T 3scy_A 248 IQTVAADTVNAQGSG--------DIHLSPDGKYLYASNRLKADGVAIFKVDET-NGT--------LTKVGYQLT-GIHPR 309 (361)
T ss_dssp EEEEESCSSCCCCEE--------EEEECTTSSEEEEEECSSSCEEEEEEECTT-TCC--------EEEEEEEEC-SSCCC
T ss_pred eEEEecCCCCCCCcc--------cEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCc--------EEEeeEecC-CCCCc
Confidence 3221 111000000 00112347778887765 78999988521 000 012222222 22112
Q ss_pred cceE--ECCEEEEee-eCCeEEE--Eeccccccc
Q 003327 799 SPVM--IGGRVFVGC-RDDYIYC--IALETQHLE 827 (829)
Q Consensus 799 ~~~~--~~~~l~vg~-~~g~l~~--~d~~tg~~~ 827 (829)
...+ ++..||+++ .++.+.. +|.++|+++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 310 NFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 2222 345788887 4566666 677788764
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=8.1e-07 Score=87.58 Aligned_cols=179 Identities=10% Similarity=0.020 Sum_probs=127.6
Q ss_pred CeEEEEecC---CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC-Cee
Q 003327 486 DIYLFVGSH---SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC-GEV 560 (829)
Q Consensus 486 ~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~-~~~ 560 (829)
++.||+++. ++.|..+|+.||+++.+..++.... ...+..+++.+|+.++ ++.+..+|.+|++++.++..+ ..-
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g 109 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG 109 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe
Confidence 369999874 4789999999999998888765432 2234445679999886 578999999999999988766 321
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--cc---ccceeecCCCEEEEEec-CCeEEEEEccCCCc
Q 003327 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPF 634 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g 634 (829)
. .+..+++.+|++..++.|+.+|+++.+.+-++..+.. .. ....+. ++.+|+..+ ++.|.++|+++ |
T Consensus 110 --~-glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t--g 182 (266)
T 2iwa_A 110 --W-GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD--G 182 (266)
T ss_dssp --C-EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT--C
T ss_pred --E-EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC--C
Confidence 1 1333567888887788999999999998887765421 11 112233 378999885 57899999998 8
Q ss_pred eEEEeeccCC-------------cceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003327 635 HTLWLHELEV-------------PAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 635 ~~~w~~~~~~-------------~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
+.+-.+.... ......++.++++++|+... .+.++.++
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 8776665431 12245567777888888764 46777776
No 254
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=98.77 E-value=5.4e-09 Score=86.24 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=59.9
Q ss_pred cccHHHHHHHHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 286 KASDLLQVIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
....+++.++++|+++|+. +.++++++||++|+|||.|++|...| .++...+|++||+..|+.++.+.
T Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~ 93 (95)
T 2ju1_A 17 RTAELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAE 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHH
Confidence 3456888999999999993 67999999999999999999999876 47888999999999999998764
No 255
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.77 E-value=1.2e-06 Score=90.13 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=126.0
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-CEEEEEEcCCCcEEEEEec-CCee---e
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQT-CGEV---K 561 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~-~~~~---~ 561 (829)
..+|++..++.|+.||. +|+.. .+...........+..++ .+|+++.. +.|+.+|.. |+....... .+.. .
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~~~-~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGTVD-VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSCEE-EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred EEEEEECCCCEEEEEeC-CCCEE-EEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 36788888899999998 56543 233333333345565554 57887654 689999975 776443221 1111 1
Q ss_pred eeeeeecCCCEEEE-----ecc-------------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--
Q 003327 562 CQPVVDAPRQLIWC-----GSH-------------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-- 621 (829)
Q Consensus 562 ~~~~~~~~~~~i~~-----gs~-------------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-- 621 (829)
...+++ .++.+|+ |+. .+.|+.+|+++|+..... .......+++++++..+|++...
T Consensus 134 ~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~ 210 (305)
T 3dr2_A 134 NDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQ 210 (305)
T ss_dssp CCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC-
T ss_pred CCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCc
Confidence 122333 4677888 442 357999999888754332 11122345677767789988765
Q ss_pred ----CeEEEEEccCCCceEEEee----ccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcc
Q 003327 622 ----GRLTAISVKALPFHTLWLH----ELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT 693 (829)
Q Consensus 622 ----g~l~~~~~~~~~g~~~w~~----~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~ 693 (829)
+.|++++.+. +. +... ...........+. .++.+|+++ .++|++|+.+|+.+.++.....+.+. .
T Consensus 211 ~~~~~~i~~~~~~~--~~-l~~~~~~~~~~~~~pdgi~~d-~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~~~~~~--~ 283 (305)
T 3dr2_A 211 GHGSVEITAFAWRD--GA-LHDRRHFASVPDGLPDGFCVD-RGGWLWSSS-GTGVCVFDSDGQLLGHIPTPGTASNC--T 283 (305)
T ss_dssp --CCCEEEEEEEET--TE-EEEEEEEECCSSSCCCSEEEC-TTSCEEECC-SSEEEEECTTSCEEEEEECSSCCCEE--E
T ss_pred CCCCCEEEEEEecC--CC-ccCCeEEEECCCCCCCeEEEC-CCCCEEEec-CCcEEEECCCCCEEEEEECCCceeEE--E
Confidence 6899999875 32 1110 1111111123333 456699998 45799999778887777655422111 1
Q ss_pred cccCCCeEEEEeeCCeEEEEeC
Q 003327 694 SFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
....++.||+++.+ +|++++.
T Consensus 284 f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 284 FDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp ECTTSCEEEEEETT-EEEEEEC
T ss_pred EeCCCCEEEEEcCC-eEEEEEC
Confidence 11234579988864 6888874
No 256
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.75 E-value=9.7e-07 Score=100.30 Aligned_cols=225 Identities=9% Similarity=0.009 Sum_probs=134.8
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CC--EEEEEEc-CCCcEEEEEecC
Q 003327 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KG--KIYFLDY-LTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg--~l~~~d~-~tG~~~w~~~~~ 557 (829)
++..|..++. +|.+..|+..+|+.......+.....++.++++ ..+|++.. +. .|+.++. .+|... .....
T Consensus 32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~ 109 (582)
T 3o4h_A 32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV 109 (582)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS
T ss_pred CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC
Confidence 4455555554 888888988777654322222233446667766 66776654 22 6778886 134333 22222
Q ss_pred CeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC----CeEEEEEccCC
Q 003327 558 GEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS----GRLTAISVKAL 632 (829)
Q Consensus 558 ~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~----g~l~~~~~~~~ 632 (829)
.... ...+..+ ++.+++...++.+..||.++|+......... .++.+++++..|+.++.+ +.|+.+|+++
T Consensus 110 ~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~- 184 (582)
T 3o4h_A 110 KPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS- 184 (582)
T ss_dssp CSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-
T ss_pred CCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-
Confidence 2222 2234433 4556666666677799999998765544333 566777778888876665 6799999887
Q ss_pred CceEEEeeccCCcceeeeeeeecCCEEEEEeeCC--eEEEEc-CCCCEEEEeecCCceeecCc------ccccCCCe-EE
Q 003327 633 PFHTLWLHELEVPAFASLCITSANRHVICCLVDG--HVVALD-SSGSIIWRCRTGGPIFAGPC------TSFALPSQ-VL 702 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g--~i~~~d-~~g~~~w~~~~~~~~~~~~~------~~~~~~~~-i~ 702 (829)
|+.. ..........++.+++++..++.+..++ .|+.+| .+|+.. ...........+. .....++. ++
T Consensus 185 -g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 185 -GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp -CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred -CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 6544 2222333346788888999999766677 899999 788776 4332211111111 00122444 45
Q ss_pred EEeeCCeEEEEeCCCCcEE
Q 003327 703 ICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~ 721 (829)
.++.+|.+..|+. |+.+
T Consensus 262 ~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 262 VARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEETTEEEEEET--TEEE
T ss_pred EEEcCCcEEEEEE--CCee
Confidence 5677899999997 7654
No 257
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.75 E-value=1.6e-06 Score=89.37 Aligned_cols=223 Identities=10% Similarity=0.080 Sum_probs=128.6
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcCCCeEEEeecc
Q 003327 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~tg~~~w~~~~ 598 (829)
.+++..+++ .+|++..++.|+.|+. +|+.. .+...........++. ++.+|+++.. +.|+.+|.. |+.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEec
Confidence 466666766 5666767889999997 66643 2322333333344444 4568887654 689999976 765433221
Q ss_pred -CCc---ccccceeecCCCEEEEE-----ec-------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC
Q 003327 599 -GGS---IFGSPAIDEVHDVLYVA-----ST-------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN 656 (829)
Q Consensus 599 -~~~---~~~~~~~~~~~~~l~v~-----t~-------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 656 (829)
.+. ....++++. ++.+|+. +. .+.|+.+|+++ |+........ .....++.+++
T Consensus 125 ~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~--~p~gl~~spdg 199 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLD--HPNGLAFSPDE 199 (305)
T ss_dssp ETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCEEEEEES--SEEEEEECTTS
T ss_pred cCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEEEEecCC--CCcceEEcCCC
Confidence 111 123445555 5678883 32 35799999876 5432211221 12345667778
Q ss_pred CEEEEEeeC------CeEEEEc-CCCCEEEEee--cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003327 657 RHVICCLVD------GHVVALD-SSGSIIWRCR--TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 657 ~~l~~~~~~------g~i~~~d-~~g~~~w~~~--~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
..+|++... +.|++++ ..+. +.... ..........+..+.+|.+|+++.+ +|++|++ +|+.+..+..+
T Consensus 200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~ 276 (305)
T 3dr2_A 200 QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTP 276 (305)
T ss_dssp SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECS
T ss_pred CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECC
Confidence 888888765 6899998 4433 21111 0000001112345667889999854 5999998 58877776655
Q ss_pred CccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.......+. .+++.+|+++.+ .|+.++.
T Consensus 277 ~~~~~~~f~------------~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 277 GTASNCTFD------------QAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp SCCCEEEEC------------TTSCEEEEEETT-EEEEEEC
T ss_pred CceeEEEEe------------CCCCEEEEEcCC-eEEEEEC
Confidence 432221111 226789998865 5887753
No 258
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=9.9e-07 Score=92.24 Aligned_cols=260 Identities=9% Similarity=-0.125 Sum_probs=158.8
Q ss_pred CeEEEEecCC-C----cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcE
Q 003327 486 DIYLFVGSHS-H----KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDI 550 (829)
Q Consensus 486 ~~~l~igs~~-g----~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~ 550 (829)
..++|+.... + .|..+|..|++++-++..+... ...++++++.+|+++. ++.|..||+.|+++
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3457776542 2 7889999999999988887664 5788899999999973 57899999999999
Q ss_pred EEEEecCC-------eeeeeeeeecCCCEEEEecc--CCeEEE--EEcCCCeEEEeeccCCcccccceeecCCCEEEE-E
Q 003327 551 YWTFQTCG-------EVKCQPVVDAPRQLIWCGSH--DHNLYA--LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV-A 618 (829)
Q Consensus 551 ~w~~~~~~-------~~~~~~~~~~~~~~i~~gs~--~g~l~~--~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v-~ 618 (829)
+.++..++ .-.....++++++.+|++.. +..+.. +|..+ +..+..++... +..+++..|+ .
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~----~~p~g~~~~~~~ 181 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFH----IHPGAAATHYLG 181 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCC----CEEEETTEEECC
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceE----EccCCCeEEEEE
Confidence 99887651 11233456778889999864 356777 88877 34444433211 1222333444 4
Q ss_pred ecCCeEEEEEccC---CCceEEEeec----cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC--EE--EEeecC--
Q 003327 619 STSGRLTAISVKA---LPFHTLWLHE----LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS--II--WRCRTG-- 684 (829)
Q Consensus 619 t~~g~l~~~~~~~---~~g~~~w~~~----~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~--~~--w~~~~~-- 684 (829)
+.+|.+..++.++ ..++..|... .+.... . ..+++.+|+.+. +.++.+| .++. .+ |.+...
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 5678888888763 0144443211 111111 2 456677777777 9999999 5432 21 322110
Q ss_pred ---C-ceeecCccc-ccCCCeEEEEee-C--------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003327 685 ---G-PIFAGPCTS-FALPSQVLICSR-N--------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 685 ---~-~~~~~~~~~-~~~~~~i~~~t~-~--------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
+ .......+. ...++.+|++.. + +.+..+|.++++.+-++..+.......+. .+
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s------------~D 324 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA------------QD 324 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEEC------------CS
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEEC------------CC
Confidence 0 000000011 123468998765 3 36779999999987665544322221111 12
Q ss_pred CcEEEEEcc--CCcEEEEEeecC
Q 003327 751 DRLVCICTS--SGSIHILRVNLD 771 (829)
Q Consensus 751 ~~~l~~~~~--~G~l~~~d~~~~ 771 (829)
+..+|+.+. ++.|.++|..++
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSC
T ss_pred CCEEEEEccCCCCeEEEEECCCC
Confidence 555555554 899999999865
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=9.5e-07 Score=85.81 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=119.8
Q ss_pred CeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003327 486 DIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.||+++.+ ..|..+|++||+++-+..++.... ...+..+++.||+.++ ++.++.||++|++++-++..+..-.
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC-EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc-eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce
Confidence 4689998853 379999999999999888876542 2234445679999986 6789999999999999988765321
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--Cccccc---ceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003327 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGS---PAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~---~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
.+..+++.+|+...++.|+.+|++|.+.+-++... +..... .... ++.||+..+ ++.|.++|+++ |+
T Consensus 131 ---glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t--G~ 203 (262)
T 3nol_A 131 ---GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET--GK 203 (262)
T ss_dssp ---CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT--CB
T ss_pred ---EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC--Cc
Confidence 12234678888877788999999999988877653 222211 2233 478999885 67899999998 88
Q ss_pred EEEeeccCC------------cceeeeeeeecCCEEEEEe
Q 003327 636 TLWLHELEV------------PAFASLCITSANRHVICCL 663 (829)
Q Consensus 636 ~~w~~~~~~------------~~~~s~~~~~~~~~l~~~~ 663 (829)
.+-.++... .....+++.++.+++|+.+
T Consensus 204 V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 204 VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 776665531 1223445555566666654
No 260
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=98.74 E-value=1.3e-08 Score=82.78 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=60.8
Q ss_pred ccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcc--hhhhcCCCHHHHHHHHHhh
Q 003327 285 TKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDM--RLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~--~~~~~~pt~~~la~~l~~~ 353 (829)
.+.+++++.++++|+++|+. +.+.++++||++|+|||.+++|..+| .++. ..+|++||+..|+.++.+.
T Consensus 7 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~~ 85 (89)
T 2kr5_A 7 GVSNEKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGS 85 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHHh
Confidence 44568899999999999998 67999999999999999999998865 3677 8899999999999998763
No 261
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.73 E-value=5.4e-06 Score=84.92 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=114.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC---eee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---EVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~---~~~ 561 (829)
.+..+|+...++.|+.||+.+++.. .+..+..+ ....+..++. +|++. +++|+.||.++|+......... ...
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~-~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 99 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPV-SSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNR 99 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCE-EEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCce-EEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCC
Confidence 3445666667889999999988763 23444433 3556666655 78876 6789999999998765433221 111
Q ss_pred eeeeeecCCCEEEEecc------------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEE
Q 003327 562 CQPVVDAPRQLIWCGSH------------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAIS 628 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~------------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~ 628 (829)
..-+..+.++.+|+++. .+.||.+|.. |+...... .......+++++++..+|+.. .++.|++++
T Consensus 100 ~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~ 177 (297)
T 3g4e_A 100 FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFD 177 (297)
T ss_dssp EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEe
Confidence 12222334567898863 3578999865 44332211 111223456666667787654 467899998
Q ss_pred ccCCCceEE-----EeeccCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecC
Q 003327 629 VKALPFHTL-----WLHELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 629 ~~~~~g~~~-----w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+..+|... .............++. .++.+|+++.. +.|.++| .+|+++-.+..+
T Consensus 178 ~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 178 YDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred ccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 742236432 1111111111233333 45689998764 5699999 679988776654
No 262
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=98.73 E-value=1.4e-08 Score=84.65 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..+.+++.++++|+++|++ +.+..+++||++|+|||.+++|...| .++...+|++||+..|+.++.+..
T Consensus 18 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~ 94 (99)
T 2liu_A 18 NLSEIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQIL 94 (99)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 4567899999999999998 77999999999999999999998765 478889999999999999987653
No 263
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.72 E-value=7.2e-06 Score=85.21 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC----ee
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG----EV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~----~~ 560 (829)
.+..+|+...++.|+.||..+++.. .+..+..+ .+..+..+ +.+|+++ +.+|+.||..+|+......... ..
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-~~i~~~~d-g~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKISD-SKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNR 135 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEET-TEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-eEEEEeCC-CeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCC
Confidence 3556777777889999999988754 23334332 34555666 5678877 5569999999998754333211 11
Q ss_pred eeeeeeecCCCEEEEecc-------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCC
Q 003327 561 KCQPVVDAPRQLIWCGSH-------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKAL 632 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~ 632 (829)
.....++ .++.+|+++. .+.|+.+| +|+...... .......++++.++..+|++. .++.|++++.+..
T Consensus 136 ~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~ 211 (326)
T 2ghs_A 136 SNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 211 (326)
T ss_dssp EEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred CCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc
Confidence 2223344 4566888764 36799999 576543221 111223456666667787765 4678999998611
Q ss_pred Cc-e----EEE-eeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecC
Q 003327 633 PF-H----TLW-LHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 633 ~g-~----~~w-~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~ 684 (829)
+| + ..+ .............+ ..++.+|+++. +++|+++|.+|+.+..+..+
T Consensus 212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~-d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 212 TGLPTGKAEVFIDSTGIKGGMDGSVC-DAEGHIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp TCCBSSCCEEEEECTTSSSEEEEEEE-CTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred cCCcccCceEEEECCCCCCCCCeeEE-CCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 25 3 122 11111111122233 34668999875 47899999667776555543
No 264
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.72 E-value=2.8e-06 Score=87.07 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=116.6
Q ss_pred ceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003327 521 SAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.+..+++. +|+...++.|++||..+++.. .+.....+ ....++.+ +.+|+++ ++.|+.+|.++|+........
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~-~~i~~~~d-G~l~v~~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPV-SSVALRQS-GGYVATI-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCE-EEEEEBTT-SSEEEEE-TTEEEEEETTTTEEEEEEECC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCce-EEEEECCC-CCEEEEE-CCeEEEEECCCCcEEEEEecC
Confidence 4566664444 445556789999999888763 23334333 33344444 4488876 568999999999865443321
Q ss_pred ----CcccccceeecCCCEEEEEec------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe
Q 003327 600 ----GSIFGSPAIDEVHDVLYVAST------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL 663 (829)
Q Consensus 600 ----~~~~~~~~~~~~~~~l~v~t~------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~ 663 (829)
........+++ ++.+|+++. .+.|+.++.+ |+...... ........++.++++.+|+..
T Consensus 93 ~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~~~~-~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD---HHVKKYFD-QVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp TTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT---SCEEEEEE-EESBEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC---CCEEEEee-ccccccceEEcCCCCEEEEec
Confidence 11223345555 466888873 3468888765 33221111 111123456666777777664
Q ss_pred -eCCeEEEEc---CCCCEEEE--e-ecCCceeecCcccccCCCeEEEEeeC-CeEEEEeCCCCcEEEEEecCC
Q 003327 664 -VDGHVVALD---SSGSIIWR--C-RTGGPIFAGPCTSFALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 664 -~~g~i~~~d---~~g~~~w~--~-~~~~~~~~~~~~~~~~~~~i~~~t~~-g~l~~~d~~tG~~~w~~~~~~ 728 (829)
.++.|++++ .+|.+... + ...........+..+.+|.+|+++.+ +.|++||+++|+++-.+..+.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 467888886 46654211 1 11100000111235567899999864 569999999999987777653
No 265
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.70 E-value=4.7e-06 Score=94.59 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=133.0
Q ss_pred eceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CC--eEEEEEc--CCCe
Q 003327 520 CSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DH--NLYALDF--RNYR 591 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g--~l~~~d~--~tg~ 591 (829)
.+..++.||+.|+.++. ++.+..|+..+|+.......+......+.++++ ..+|+++. +. .|+.++. ..+.
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 45677889888887766 899889988677664332222234455666655 56666553 22 5777776 4333
Q ss_pred EEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC----C
Q 003327 592 CVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD----G 666 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~----g 666 (829)
. ......... ...+..+++ .+++...++.+..||+++ |+......... .++.+++++..+++++.+ .
T Consensus 104 ~--~l~~~~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~--g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 104 Q--RLEAVKPMR-ILSGVDTGEAVVFTGATEDRVALYALDG--GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp E--ECTTSCSBE-EEEEEECSSCEEEEEECSSCEEEEEEET--TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred c--cccCCCCce-eeeeCCCCCeEEEEecCCCCceEEEccC--CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence 3 222211111 224444444 566666666677999987 66443332222 567788899999877765 6
Q ss_pred eEEEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEEeeCC--eEEEEeCCCCcEEEEEecCCcccccccccccccc
Q 003327 667 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLICSRNG--SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
.|+.+| .+|+.. +..........+.. ..|| .|+.+..+| .|+.||.++|+.. ...........+... ..
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~---~~ 248 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASI--SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT---AI 248 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEE--CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS---EE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceE--CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc---cc
Confidence 799999 777765 23222222222222 2244 566555667 8999999999887 332222111111100 00
Q ss_pred ccccccCCCcEEEEEccCCcEEEEEe
Q 003327 743 KLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.......++..++.++.+|.+.+|+.
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 00001233666777888999999987
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.70 E-value=4.9e-06 Score=86.39 Aligned_cols=228 Identities=11% Similarity=-0.000 Sum_probs=129.4
Q ss_pred CCe-EEEEecCCCcEEEEECCCCcEE-EEEEcC--------C----------ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003327 485 SDI-YLFVGSHSHKFICADAKRSSVL-WEIKLE--------G----------RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 485 ~~~-~l~igs~~g~l~~~d~~tg~~~-w~~~~~--------~----------~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
.++ .+|+++.++.|+.||..+++.. |..... + .......+..+++.||++...++|+.+|
T Consensus 28 ~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d 107 (322)
T 2fp8_A 28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVG 107 (322)
T ss_dssp TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEe
Confidence 344 4999999999999998876643 322110 0 0112234443357899998788899999
Q ss_pred cCCCcEEEEEe-cCCee--eeeeeeecC-CCEEEEeccC------------------CeEEEEEcCCCeEEEeeccCCcc
Q 003327 545 YLTGDIYWTFQ-TCGEV--KCQPVVDAP-RQLIWCGSHD------------------HNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 545 ~~tG~~~w~~~-~~~~~--~~~~~~~~~-~~~i~~gs~~------------------g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
..+|+...... ..+.. ...-+..+. ++.+|++... +.|+.+|+.+++....... ...
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~ 186 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHV 186 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESC
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-Ccc
Confidence 87775432211 11111 111123334 6789987543 6799999988875432211 111
Q ss_pred cccceeecCCCEEEEEe-cCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecCCEEEEEeeC-----------CeEE
Q 003327 603 FGSPAIDEVHDVLYVAS-TSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSANRHVICCLVD-----------GHVV 669 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-----------g~i~ 669 (829)
...++++++++.+|++. ..+.|++++.++.. +.......... .....+. .++.+|++... +.|+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d-~~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRN-ADGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEEC-TTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEEC-CCCCEEEEecCcccccccCCCccEEE
Confidence 22345666567898884 45789999987411 12111111211 2233333 35679998754 5789
Q ss_pred EEcCCCCEEEEeecCCce-eecCcccccCCCeEEEEe-eCCeEEEEeCC
Q 003327 670 ALDSSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 670 ~~d~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
++|.+|+.+-.+...... +..+......++.||+++ .++.|.+++..
T Consensus 264 ~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 264 KFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999778877665543211 122211122367888886 35678888764
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=2.7e-06 Score=81.97 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=110.0
Q ss_pred CeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003327 486 DIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
+++||.++.. ..|..+|+.||+++-+..++..... ..+...++.||+.++ ++.++.+|.+|++++-++..++.-.
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw 108 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW 108 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce
Confidence 4789998864 3799999999999998888766432 233445678999875 6789999999999999988765322
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccc-eeecCCCEEEEEec-CCeEEEEEccCCCceEE
Q 003327 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSP-AIDEVHDVLYVAST-SGRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~-~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~ 637 (829)
.+..+++.+|++..++.|+.+|++|.+.+-++.... .....+ -+.-.++.||+..+ +..|.++|+++ |+.+
T Consensus 109 ---glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~t--G~V~ 183 (243)
T 3mbr_X 109 ---ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS--GKVV 183 (243)
T ss_dssp ---EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTT--CBEE
T ss_pred ---EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCC--CCEE
Confidence 122356789998888899999999999887776532 111111 11112588999885 66899999998 8877
Q ss_pred Eeecc
Q 003327 638 WLHEL 642 (829)
Q Consensus 638 w~~~~ 642 (829)
-.+..
T Consensus 184 ~~idl 188 (243)
T 3mbr_X 184 AWIDL 188 (243)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66654
No 268
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.69 E-value=2.1e-06 Score=89.51 Aligned_cols=218 Identities=13% Similarity=0.126 Sum_probs=123.3
Q ss_pred CCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCe-EEEeeccC-------C--cccc
Q 003327 537 KGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYR-CVYKLPCG-------G--SIFG 604 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~-~~w~~~~~-------~--~~~~ 604 (829)
++.|+.+|..+|+++..+.... ......+++.++. +|+. +.++.|+.||..... .+..+... . ....
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence 5679999998999876554222 1223334554444 6655 556889999975431 44443211 1 1122
Q ss_pred cceeecCCCEEEEEe--cCCeEEEEEccCCCceEEEeeccCCc----------ceeeeeeeecCCEEEEEee-CCeEEEE
Q 003327 605 SPAIDEVHDVLYVAS--TSGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLV-DGHVVAL 671 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t--~~g~l~~~~~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~l~~~~~-~g~i~~~ 671 (829)
.++++++++.+|++. .++.|+.|+.+ |+.++.+..... .....++.++++.+|++.. ++.|.+|
T Consensus 147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEECTTTCCEEEEECSSCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 345665467788876 37889999954 777766532211 1234555556588888764 6789999
Q ss_pred c-CCCCEEEEeecC---Cceee---cCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccc---ccccccc
Q 003327 672 D-SSGSIIWRCRTG---GPIFA---GPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITAS---AYIDEHL 740 (829)
Q Consensus 672 d-~~g~~~w~~~~~---~~~~~---~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~---~~~~~~~ 740 (829)
+ .+|+.+..+... ..++. .|-+....++.+|++. .++.++.||..+|+++..+......... ..++.
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-- 301 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-- 301 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT--
T ss_pred ECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC--
Confidence 9 669988776432 12221 1111111123333332 2457999999999988766422111111 11111
Q ss_pred ccccccccCCCcEEEEE-ccCCcEEEEEeec
Q 003327 741 QLKLESCLSIDRLVCIC-TSSGSIHILRVNL 770 (829)
Q Consensus 741 ~~~~~~~~~~~~~l~~~-~~~G~l~~~d~~~ 770 (829)
++.+|++ ..++.|++|+.+.
T Consensus 302 ----------dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 ----------DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ----------TSEEEEEESSSCCEEEEEEEE
T ss_pred ----------CCCEEEEECCCCEEEEEeCCc
Confidence 3455655 4577899988763
No 269
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.68 E-value=8.3e-06 Score=87.50 Aligned_cols=196 Identities=10% Similarity=0.004 Sum_probs=120.7
Q ss_pred cceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC--EEEEEEcCCCcEEEE
Q 003327 477 SPLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG--KIYFLDYLTGDIYWT 553 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg--~l~~~d~~tG~~~w~ 553 (829)
.|.-+.-+.++.||+... ++.|+.||+.++++.......... . +++..+++.+|++..++ .|+.+|..++.....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 344333345667888764 578999999988776433333222 2 67788888999998765 899999877765333
Q ss_pred E-e--c-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee---ccCCccc---ccceeecCCCEEEEEec-CC
Q 003327 554 F-Q--T-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL---PCGGSIF---GSPAIDEVHDVLYVAST-SG 622 (829)
Q Consensus 554 ~-~--~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~---~~~~~~~---~~~~~~~~~~~l~v~t~-~g 622 (829)
. . . ........++++.++.||+...++.|+.||..++...... ..+.... ..++++++++.+|++.. ++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 3 0 1 1122233455555789999877889999999888654331 1111111 25667776788888754 57
Q ss_pred eEEEEEccCCCceEEEeeccC-C-------------cceeeeeeeecCCEEEEEe--eCCeEEEEc-CCCCEE
Q 003327 623 RLTAISVKALPFHTLWLHELE-V-------------PAFASLCITSANRHVICCL--VDGHVVALD-SSGSII 678 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~-~-------------~~~~s~~~~~~~~~l~~~~--~~g~i~~~d-~~g~~~ 678 (829)
.|+.++.+. +........ . ......++..+ +.+|++. .+..|..++ .+|.+.
T Consensus 290 ~I~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 290 SVYKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEE
Confidence 899998763 322211111 0 01123444444 4477775 467899999 888754
No 270
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=2.8e-06 Score=91.05 Aligned_cols=218 Identities=6% Similarity=-0.063 Sum_probs=122.8
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee------------
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ------------ 563 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~------------ 563 (829)
..|+.+|..+|+..............+.++++++.|+..+.++.|+.+|..+|+....+..+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 36899999988764322222222223667889999988888889999999999876554433221100
Q ss_pred -------eeeecCCCEEEEe-----ccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecC------CeE
Q 003327 564 -------PVVDAPRQLIWCG-----SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTS------GRL 624 (829)
Q Consensus 564 -------~~~~~~~~~i~~g-----s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~------g~l 624 (829)
+.+.+++..+++. ..+..|+.+|..+|+....... ......+.+.+ +++.+++.+.+ ..|
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 1112222222222 2445799999999887655432 22234455555 34556555433 358
Q ss_pred EEEEccCCCceEEEeeccC-CcceeeeeeeecCCEEEEEeeC-----CeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003327 625 TAISVKALPFHTLWLHELE-VPAFASLCITSANRHVICCLVD-----GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~~~~~~-----g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
+.++.++ ++........ ......+.+++++..+++.+.+ +.|+.+| .+|+......... .. +. ...
T Consensus 219 ~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~--~s~ 291 (396)
T 3c5m_A 219 WLVNEDG--SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CS-HL--MSN 291 (396)
T ss_dssp EEEETTS--CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EE-EE--EEC
T ss_pred EEEECCC--CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CC-CC--ccC
Confidence 8888875 4322211111 1123445677777777666543 3499999 7776543222222 11 21 122
Q ss_pred -CCeEEEE-e----------------eCCeEEEEeCCCCcEE
Q 003327 698 -PSQVLIC-S----------------RNGSIYSFEQESGNLL 721 (829)
Q Consensus 698 -~~~i~~~-t----------------~~g~l~~~d~~tG~~~ 721 (829)
++.+++. + .++.|+.||..+|+..
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 3444433 2 2467999999888764
No 271
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.67 E-value=1.6e-08 Score=113.08 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=64.4
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..|.+++|+.|+++|+++|+++.|+.+||||++|||||+||+|+.++ ++++..+|++||+++||..+....
T Consensus 5 ~~p~~~~e~~l~~iw~~vL~~~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~~ 81 (520)
T 2jgp_A 5 VAPRSVWEARLAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETA 81 (520)
T ss_dssp CCCCSHHHHHHHHHHHHHHTCSCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhc
Confidence 45778999999999999999999999999999999999999998754 478999999999999999998654
No 272
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.65 E-value=6.8e-07 Score=95.88 Aligned_cols=184 Identities=10% Similarity=0.003 Sum_probs=110.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecC------
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTC------ 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~------ 557 (829)
++..|..|+.|+.|..||..++........+.....+..+.+++. .+++++.|+.|..||..+++........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 356788899999999999988876655544444445777877654 6889999999999999998765432210
Q ss_pred --------------------CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC------------------
Q 003327 558 --------------------GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------ 599 (829)
Q Consensus 558 --------------------~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------ 599 (829)
..+........++..|+.++.|+.+..||..+++....+...
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 011111112246678999999999999999887654332211
Q ss_pred -CcccccceeecCCCE-EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEE
Q 003327 600 -GSIFGSPAIDEVHDV-LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 671 (829)
Q Consensus 600 -~~~~~~~~~~~~~~~-l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~ 671 (829)
............++. +..++.+|.|+.||..+ ++.............+.++.+++..+.+++.+ ++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG~~LA~as~~-Gv~lv 385 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG-SVLLT 385 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTSSEEEEEESS-EEEEE
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEE
Confidence 011111112222343 34466789999999887 65544433333344677888888888888754 45444
No 273
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=7.8e-06 Score=80.54 Aligned_cols=216 Identities=7% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CcEEEEEecCCee-eeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCEEEEEec-C
Q 003327 548 GDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDVLYVAST-S 621 (829)
Q Consensus 548 G~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~l~v~t~-~ 621 (829)
.+++.++..+... .....++++ +.+|+++. ++.|..+|.++|+.+..+..+...+. ...++ ++.+|+.++ +
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3455556555432 223344433 78999864 47899999999999998876554333 23333 479999886 5
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecC-cccccC
Q 003327 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGP-CTSFAL 697 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~-~~~~~~ 697 (829)
+.+.++|.++ ++.+.++..+.+ ....+..+++.+|++..++.|..+| .+.+..-+...+.. ....+ .+...
T Consensus 86 ~~v~viD~~t--~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRT--LSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTT--TEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCC--CcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 7899999987 888887765511 1234566788999988888999999 88888777665421 11111 11112
Q ss_pred CCeEEEEee-CCeEEEEeCCCCcEEEEEecCCcccc--ccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003327 698 PSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPITA--SAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 698 ~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
++.+|+... ++.|..+|+++|+++-.++....... .........+..-.....++.+|++. ..+.|+.++....
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 678998874 68999999999999877765321000 00000000001111122355666654 5778999988743
No 274
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=5.2e-06 Score=80.61 Aligned_cols=170 Identities=9% Similarity=0.044 Sum_probs=116.5
Q ss_pred EEEEEecCCeee-eeeeeecCCCEEEEeccC-C--eEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCe
Q 003327 550 IYWTFQTCGEVK-CQPVVDAPRQLIWCGSHD-H--NLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 550 ~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~~-g--~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~ 623 (829)
++.++....... ....+. ++.+|.++.+ | .|..+|+++|+.+.+.......+.- .... ++.||+.++ ++.
T Consensus 33 vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCE
Confidence 444554443332 223344 4688887643 3 7999999999999988776654432 3333 489999986 678
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccCCCe
Q 003327 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQ 700 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~ 700 (829)
+++||+++ ++.+-++.... ....++.+++.+|+...++.|..+| .+.+++-+.... +..+..+.-....++.
T Consensus 109 v~v~D~~t--~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ 183 (262)
T 3nol_A 109 GFVWNIRN--LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGE 183 (262)
T ss_dssp EEEEETTT--CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTE
T ss_pred EEEEECcc--CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCE
Confidence 99999998 88887776643 2234556788999988778899999 888888776653 1111111001112679
Q ss_pred EEEEee-CCeEEEEeCCCCcEEEEEecCC
Q 003327 701 VLICSR-NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 701 i~~~t~-~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
||+... ++.|..+|++||+++-.++...
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence 999874 7789999999999987777653
No 275
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=1.9e-06 Score=83.62 Aligned_cols=148 Identities=10% Similarity=0.003 Sum_probs=108.3
Q ss_pred CeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeee
Q 003327 486 DIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.||+++. +|.|..+|++||+++.+. ++.... ...+..+++.||+.++ ++.++.||++|++++-++....+-. .
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F-geGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-G 140 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF-AEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-G 140 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC-EEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-C
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc-eeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-E
Confidence 578998875 568999999999999888 766532 2234456678999875 6789999999999999988754422 1
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--ccc---ccceeecCCCEEEEEec-CCeEEEEEccCCCceEE
Q 003327 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTL 637 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~ 637 (829)
+..+++.+|++..++.|+.+|++|.+.+-++.... ... .-..+. ++.||+..+ +..|.++|+++ |+.+
T Consensus 141 --Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T--G~V~ 214 (268)
T 3nok_A 141 --LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT--GTVV 214 (268)
T ss_dssp --EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT--CBEE
T ss_pred --EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC--CcEE
Confidence 12245789998878899999999999888776532 111 111223 478999885 66899999988 8877
Q ss_pred Eeecc
Q 003327 638 WLHEL 642 (829)
Q Consensus 638 w~~~~ 642 (829)
-.++.
T Consensus 215 ~~Idl 219 (268)
T 3nok_A 215 GVIDA 219 (268)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66654
No 276
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.62 E-value=8.9e-06 Score=86.14 Aligned_cols=234 Identities=11% Similarity=0.118 Sum_probs=138.9
Q ss_pred eeCCCeEEEEecCCCcEEEEECC-CCcEEEEEE--cCCceeeceEEeeCCcE--EEEEE-------------eCCEEEEE
Q 003327 482 LKDSDIYLFVGSHSHKFICADAK-RSSVLWEIK--LEGRIECSAAVLADFSQ--VVVGC-------------YKGKIYFL 543 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~-tg~~~w~~~--~~~~~~~~~~~~~~~~~--v~vg~-------------~dg~l~~~ 543 (829)
++.++..||+++.+ .+..||.. +|++..... ..+. .....++++++. ++++. .++.+..|
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 34456678888877 79999987 888754322 2222 234567778774 44442 47888888
Q ss_pred EcC-CCcEEEEEec----CCeeeeeeeeecCCCEEEEecc-CCeEEEEEcC-CCeEEE--eecc--CCcccccceeecCC
Q 003327 544 DYL-TGDIYWTFQT----CGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR-NYRCVY--KLPC--GGSIFGSPAIDEVH 612 (829)
Q Consensus 544 d~~-tG~~~w~~~~----~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~-tg~~~w--~~~~--~~~~~~~~~~~~~~ 612 (829)
+.. +|++.-.... .........+++++..+|+++. ++.|+.||.. +|+... .... ++.......+++++
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 876 5776543331 2233445567777778887653 5789999998 787643 2221 12223445677777
Q ss_pred CEEEEEec-CCeEEEEEccCCCceEEE---eec-cCC-----c-------ceeeee-eeecCCEEEEEeeCC------eE
Q 003327 613 DVLYVAST-SGRLTAISVKALPFHTLW---LHE-LEV-----P-------AFASLC-ITSANRHVICCLVDG------HV 668 (829)
Q Consensus 613 ~~l~v~t~-~g~l~~~~~~~~~g~~~w---~~~-~~~-----~-------~~~s~~-~~~~~~~l~~~~~~g------~i 668 (829)
..+|++.. ++.+.+|+.+..+|+... ... ... . ...... ++++++.+|+++.+. .|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 88998875 678888876543365432 121 111 1 234566 777888898877533 78
Q ss_pred EEEc-C-CCCEEEE---eecC-CceeecCccccc--CCCeEEEEeeC-CeEEEEeCCCC
Q 003327 669 VALD-S-SGSIIWR---CRTG-GPIFAGPCTSFA--LPSQVLICSRN-GSIYSFEQESG 718 (829)
Q Consensus 669 ~~~d-~-~g~~~w~---~~~~-~~~~~~~~~~~~--~~~~i~~~t~~-g~l~~~d~~tG 718 (829)
.+|+ . +|++... .... ....... +... .++.+++++.+ +.|..|+.+..
T Consensus 285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECTTSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEECCCCCEEEeeeeeecCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8888 4 6775431 2111 1111100 0110 25578888754 78888876655
No 277
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.61 E-value=2e-06 Score=86.71 Aligned_cols=189 Identities=15% Similarity=0.121 Sum_probs=100.5
Q ss_pred ceEEeeCCcEEEE-E-EeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003327 521 SAAVLADFSQVVV-G-CYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 521 ~~~~~~~~~~v~v-g-~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
..++..++ .+|+ + +.++.|+.||..++... .+.... .......++. ++.+|+++.++.|+.||..++.. +.+.
T Consensus 28 ~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~i~~~d~~~~~~-~~~~ 103 (270)
T 1rwi_B 28 GVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQ-TVLP 103 (270)
T ss_dssp EEEECTTC-CEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCC-EECC
T ss_pred ceEECCCC-CEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECC-CCCEEEEcCCCEEEEEeCCCceE-eeee
Confidence 34455554 5787 6 45788999997665443 222221 1122233443 45688887688999999776543 3332
Q ss_pred cCC-cccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-C
Q 003327 598 CGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-S 673 (829)
Q Consensus 598 ~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~ 673 (829)
..+ .....+.++. ++.+|++. .++.|+.++..+ ..................+.. ++.+|++.. ++.|+.+| .
T Consensus 104 ~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 104 FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC--CSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTT
T ss_pred cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC--ceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecC
Confidence 222 2223344554 45688875 467899997544 332221111111112334443 445888764 57899999 4
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCc
Q 003327 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGN 719 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~ 719 (829)
++... ...... ......+..+.++.+|+++. ++.|+.|+..+..
T Consensus 180 ~~~~~-~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 180 SNNQV-VLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp TCCEE-ECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCceE-eecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 44432 222111 11111133455679999875 5689999986544
No 278
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.61 E-value=6.9e-06 Score=83.59 Aligned_cols=216 Identities=10% Similarity=0.013 Sum_probs=121.2
Q ss_pred EeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccC-CcccccceeecCC
Q 003327 535 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCG-GSIFGSPAIDEVH 612 (829)
Q Consensus 535 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~-~~~~~~~~~~~~~ 612 (829)
..++.|+.||..+++.......... ...+.+.+++..+++++ ++.|+.||..+ ++........ ......+.+.+++
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3477899999999988765554433 44556777777777775 78999999999 8766544333 2345567777777
Q ss_pred CEEEEEec----CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEE--c-CCCCEEEEeecC
Q 003327 613 DVLYVAST----SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVAL--D-SSGSIIWRCRTG 684 (829)
Q Consensus 613 ~~l~v~t~----~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~--d-~~g~~~w~~~~~ 684 (829)
..++++.. ...|+.++..+ +... ....... ...+.+.+++..++ .+..++.+.++ + .+++........
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~--~~~~-~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTG--GTPR-LMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTC--CCCE-ECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CEEEEEEeCCCCcceEEEEECCC--CceE-EeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 88888773 35677777765 4322 2222222 34456777777776 56667755444 4 444443222222
Q ss_pred CceeecCcccccCC-CeEEEEee-CCe--EEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003327 685 GPIFAGPCTSFALP-SQVLICSR-NGS--IYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 685 ~~~~~~~~~~~~~~-~~i~~~t~-~g~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
..+... . ...+ ..+++++. ++. |+.++..+++.. .+.........+. ...++..+++++.+
T Consensus 173 ~~~~~~-~--~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~-----------~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 173 GRNDGP-D--YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPH-----------PSPSGDKVVFVSYD 237 (297)
T ss_dssp SCEEEE-E--ECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEE-----------ECTTSSEEEEEEEE
T ss_pred Cccccc-e--ECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeE-----------ECCCCCEEEEEEcC
Confidence 222211 1 1223 34665543 544 444554444432 2221111111111 12336677776654
Q ss_pred -----------CcEEEEEeecC
Q 003327 761 -----------GSIHILRVNLD 771 (829)
Q Consensus 761 -----------G~l~~~d~~~~ 771 (829)
+.|++||..++
T Consensus 238 ~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 238 ADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCcccccCceEEEEEecCCC
Confidence 45999998754
No 279
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=1.4e-05 Score=76.98 Aligned_cols=169 Identities=9% Similarity=-0.000 Sum_probs=116.9
Q ss_pred EEEEEecCCeee-eeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCe
Q 003327 550 IYWTFQTCGEVK-CQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 550 ~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~ 623 (829)
++-++....... ....+++ +.+|.++.. ..|..+|+++|+.+-+.......+.- .... +++||+.++ ++.
T Consensus 11 v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 444554433322 2333443 789988654 37999999999999988776655432 3333 489999885 578
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecCcccccCCCe
Q 003327 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSFALPSQ 700 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~~~~~~~~~~ 700 (829)
+++||.++ ++.+-++..... ...++.+++.+|++..++.|+.+| .+.+++-+.+.... .+....-..-.++.
T Consensus 87 v~v~D~~t--l~~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~ 161 (243)
T 3mbr_X 87 GFVYDLAT--LTPRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGE 161 (243)
T ss_dssp EEEEETTT--TEEEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred EEEEECCc--CcEEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCE
Confidence 99999988 888887766542 234556788999998889999999 88888876665321 11111001123788
Q ss_pred EEEEe-eCCeEEEEeCCCCcEEEEEecC
Q 003327 701 VLICS-RNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 701 i~~~t-~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
||+.. .+..|..+|+++|+++-.++..
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 99887 4778999999999998777654
No 280
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=98.60 E-value=5.1e-09 Score=135.04 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhcCCCccc
Q 003327 290 LLQVIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKKGLCNLD 360 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~~~~~~~ 360 (829)
.++.+.+.|+++|+++ .|+++++||++|||||+|++|.+.|+ +++..|+. +|+..|+..+..........
T Consensus 2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~~~~~~~~~ 2202 (2512)
T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSKTSTDADPA 2202 (2512)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhhcccccccc
Confidence 4567899999999974 58999999999999999999998763 77788887 89999988775432111000
Q ss_pred cc---------------cc---------cccc---cCcccccccccccCccccchhhhhhcccccCCccccCCcccccCC
Q 003327 361 VS---------------AD---------ANWK---LNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKD 413 (829)
Q Consensus 361 ~~---------------~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~ 413 (829)
.. .. .... ......++||+|+..|....|..+++.|. .++|++|.++....
T Consensus 2203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~Lfc~~~agG~~~~y~~l~~~l~--~~v~~lq~pg~~~~ 2280 (2512)
T 2vz8_A 2203 TPTSHEDSPVRQQATLNLSTLLVNPEGPTLTRLNSVQSAERPLFLVHPIEGSITVFHGLAAKLS--IPTYGLQCTGAAPL 2280 (2512)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccCceeeecccccCCCCCeEEeCCccccHHHHHHHHHhhC--CcEEEEecCCCCCC
Confidence 00 00 0000 11123579999999999999999999996 89999987542000
Q ss_pred --------------CCCccCCCCCC-eeeecccccee--ecccccc
Q 003327 414 --------------GLPWNLSSVPM-SCSFSRCNKVM--HEEKIRG 442 (829)
Q Consensus 414 --------------~~~~~~~~~~~-~~s~~~~~~~~--~~~~~~~ 442 (829)
..-.+..||.| |||+|+.+|++ .+++.++
T Consensus 2281 ~~i~~la~~~~~~i~~~~p~gpy~L~G~S~Gg~lA~evA~~L~~~G 2326 (2512)
T 2vz8_A 2281 DSIQSLASYYIECIRQVQPEGPYRIAGYSYGACVAFEMCSQLQAQQ 2326 (2512)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEEECHhHHHHHHHHHHHHHcC
Confidence 00112338999 99999999988 4444443
No 281
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.60 E-value=2.3e-05 Score=84.03 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=120.5
Q ss_pred ceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC--eEEEEEcCCCeEEEee-
Q 003327 521 SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH--NLYALDFRNYRCVYKL- 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~- 596 (829)
..++..+ +.||+... ++.|+.||.++|++....... .... +.++.+++.+|++..++ .|+.+|..++......
T Consensus 135 ~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 135 GIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp EEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred EEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 3455555 45777654 578999998888776444332 2223 66777778899888765 7999998876543222
Q ss_pred --cc-CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee---ccCCcce---eeeeeeecCCEEEEEee-CC
Q 003327 597 --PC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVPAF---ASLCITSANRHVICCLV-DG 666 (829)
Q Consensus 597 --~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~---~~~~~~~---~s~~~~~~~~~l~~~~~-~g 666 (829)
.. .........++++++.||+...++.|+.||.++ +...... ....... ...++.++++.+|++.. ++
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 11 122234456666678999987788899999886 4332220 1111111 15566666788888764 57
Q ss_pred eEEEEcCCCCEEEEeecC---C--------ceeecC-cccccCCCeEEEEe--eCCeEEEEeCCCCcEEE
Q 003327 667 HVVALDSSGSIIWRCRTG---G--------PIFAGP-CTSFALPSQVLICS--RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~---~--------~~~~~~-~~~~~~~~~i~~~t--~~g~l~~~d~~tG~~~w 722 (829)
.|+.++.+|+........ + ..+..| .+..+.++.+|++. .++.|+.|+..+|++.-
T Consensus 290 ~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 290 SVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 899999666543222211 0 001122 13345567799885 46789999987887643
No 282
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.59 E-value=1.3e-05 Score=83.30 Aligned_cols=195 Identities=8% Similarity=0.038 Sum_probs=113.5
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003327 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.+..+++ .+|++..++.|+.||..+|+.. .+.....+ ....+.+ ++.+|+++. ..|+.+|.++|+........
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-~~i~~~~-dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKIS-DSKQLIASD-DGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEE-TTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-eEEEEeC-CCeEEEEEC-CCEEEEECCCCcEEEEeeCC
Confidence 345555444 4455556789999998888754 23333333 2333443 467888874 46999999998865433221
Q ss_pred C----cccccceeecCCCEEEEEec-------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCe
Q 003327 600 G----SIFGSPAIDEVHDVLYVAST-------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGH 667 (829)
Q Consensus 600 ~----~~~~~~~~~~~~~~l~v~t~-------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~ 667 (829)
. .......+++ ++.+|+++. .+.|+.++ + |+...... ........++.++++.+|+.. .++.
T Consensus 129 ~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~--g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--K--GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--T--TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--C--CcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCCE
Confidence 1 1223445555 456888874 35788888 3 55432211 111123455666777787765 3578
Q ss_pred EEEEc-C--CC-CE----EEE-eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCC
Q 003327 668 VVALD-S--SG-SI----IWR-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 668 i~~~d-~--~g-~~----~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
|++++ . +| ++ .+. +...... ...+..+.++.+|+++. ++.|++||+ +|+.+..+..+.
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~--p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGG--MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSE--EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCC--CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 99998 5 66 32 121 1111111 11233556789999985 478999998 677766665543
No 283
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.59 E-value=2.2e-06 Score=89.69 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=149.5
Q ss_pred ceEEeeCCCeEEEEec----------CCCcEEEEECCCCcEEEEEEcCC-------ceeeceEEeeCCcEEEEEEe--CC
Q 003327 478 PLVVLKDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEG-------RIECSAAVLADFSQVVVGCY--KG 538 (829)
Q Consensus 478 p~v~~~d~~~~l~igs----------~~g~l~~~d~~tg~~~w~~~~~~-------~~~~~~~~~~~~~~v~vg~~--dg 538 (829)
|-+.++.++..+|++. .++.|..||+.|+++..+..+++ ..-....+++|++.+|++.. ++
T Consensus 68 P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 3455566788999986 35789999999999999887651 11125678899999999986 35
Q ss_pred EEEE--EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----CeEEEeec----cCCcccccce
Q 003327 539 KIYF--LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YRCVYKLP----CGGSIFGSPA 607 (829)
Q Consensus 539 ~l~~--~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~~~w~~~----~~~~~~~~~~ 607 (829)
.+.. +|+.+ +.++..++... +..+.+...+..+.++.+..+|.++ |+..+... .+....
T Consensus 148 ~v~V~~iD~~t---v~~i~v~~~~~---~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---- 217 (368)
T 1mda_H 148 AAGLSVPGASD---DQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---- 217 (368)
T ss_dssp EEEEEETTTEE---EEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE----
T ss_pred eEEEEEEchhh---ceEEECCCceE---EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc----
Confidence 6777 89877 44454433211 1222223344456778888899887 66655321 111111
Q ss_pred eecCCCEEEEEecCCeEEEEEccCCCceEE--EeeccC-----C--cc-eeeeeeeecCCEEEEEee-C--------CeE
Q 003327 608 IDEVHDVLYVASTSGRLTAISVKALPFHTL--WLHELE-----V--PA-FASLCITSANRHVICCLV-D--------GHV 668 (829)
Q Consensus 608 ~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~--w~~~~~-----~--~~-~~s~~~~~~~~~l~~~~~-~--------g~i 668 (829)
...+++.+|+.+. +.++.+|..+..-+.+ |..... . +. .....+.++++++|++.. . +++
T Consensus 218 ~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 218 QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 2444577777777 8899999864211222 322110 0 00 011356778899999765 3 467
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEEee--CCeEEEEeCCCCcEEEEEecCCc
Q 003327 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLICSR--NGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~--~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
.++| .+++.+-++..+...... ....++ .+|+.+. ++.|..+|..+++++-++..+..
T Consensus 297 ~ViD~~t~~vv~~i~vg~~p~gi---~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGHDSDAI---IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEEESSSCCEEECCEEEEEECEE---EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEEECCCCeEEEEEECCCCcceE---EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 7999 899888777665432221 122344 4777765 79999999999999877665443
No 284
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.58 E-value=8.7e-06 Score=84.47 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE-EEEecC--------C----------eeeeeeeeecCCCEEEEeccCCe
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQTC--------G----------EVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~-w~~~~~--------~----------~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
.+++..++..+|++..++.|+.||..+++.. |..... + .......++..++.||+++..+.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~ 102 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH 102 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence 3455556556999988999999998776553 322110 0 01122334434688999977778
Q ss_pred EEEEEcCCCeEEEeec-cCCc---ccccceeecCCCEEEEEecC------------------CeEEEEEccCCCceEEEe
Q 003327 582 LYALDFRNYRCVYKLP-CGGS---IFGSPAIDEVHDVLYVASTS------------------GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~-~~~~---~~~~~~~~~~~~~l~v~t~~------------------g~l~~~~~~~~~g~~~w~ 639 (829)
++.+|..+|+...... ..+. ......++..++.+|++... |.|+.+|.++ ++....
T Consensus 103 i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST--KETTLL 180 (322)
T ss_dssp EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT--TEEEEE
T ss_pred EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC--CEEEEe
Confidence 9999988765322211 1111 11223444325689987643 6799999876 543221
Q ss_pred e-ccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CC---CCEEEEeecCCceeecCcccccCCCeEEEEeeC------
Q 003327 640 H-ELEVPAFASLCITSANRHVICCL-VDGHVVALD-SS---GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN------ 707 (829)
Q Consensus 640 ~-~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~---g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~------ 707 (829)
. ....+ ...++.++++.+|++. .++.|++++ .. +.........+ . .-+..+.+|.+|+++..
T Consensus 181 ~~~~~~p--~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P---~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 181 LKELHVP--GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P---GNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEESCC--CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E---EEEEECTTSCEEEEEEEETTSST
T ss_pred ccCCccC--cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C---CCeEECCCCCEEEEecCcccccc
Confidence 1 11111 2345556667788885 457899998 43 22211111212 1 11335567889999754
Q ss_pred -----CeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003327 708 -----GSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 708 -----g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
+.|+++|+ +|+++-.+..+... ...+. .+...++.+|+++. ++.|.+++..
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~----------~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFE----------QIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCC----------EEEEETTEEEEECSSCSEEEEEEC-
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccce----------EEEEeCCEEEEeecCCCceEEEecc
Confidence 67999997 48877666554321 01010 00112678888864 5678888765
No 285
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.56 E-value=2.9e-06 Score=99.16 Aligned_cols=197 Identities=6% Similarity=-0.069 Sum_probs=122.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe---eeeeeeeecCCCEEEEeccC---------CeEEEEEcC
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE---VKCQPVVDAPRQLIWCGSHD---------HNLYALDFR 588 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~i~~gs~~---------g~l~~~d~~ 588 (829)
++.+++++..++. +.|+.|+.||..+|+....+..+.. ....+.+++++..|++++.+ +.++.||..
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 5567778776655 6788999999999988766654432 13456777788888877653 778999999
Q ss_pred CCeEEEeeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-c-----------------e
Q 003327 589 NYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-A-----------------F 647 (829)
Q Consensus 589 tg~~~w~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-~-----------------~ 647 (829)
+|+.. .+.... .....+.+++++..|++++. +.|+.+|..+ |+.......... . .
T Consensus 100 ~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 100 HGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--CceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 98762 232221 12456777877777777765 7899999887 554332222111 1 1
Q ss_pred eeeeeeecCCEEEEEeeCC----------------------------------eEEEEc-CCCCEEEEeecC------Cc
Q 003327 648 ASLCITSANRHVICCLVDG----------------------------------HVVALD-SSGSIIWRCRTG------GP 686 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g----------------------------------~i~~~d-~~g~~~w~~~~~------~~ 686 (829)
.++.+++++..+++++.++ .|+.+| .+++....+... ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 3567788888888876543 677788 666543333321 11
Q ss_pred eeecCcccccCCCeEE-EEee----CCeEEEEeCCCCcEEEEE
Q 003327 687 IFAGPCTSFALPSQVL-ICSR----NGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 687 ~~~~~~~~~~~~~~i~-~~t~----~g~l~~~d~~tG~~~w~~ 724 (829)
.... +....++.++ +.+. +..|+.||..+|+.....
T Consensus 256 ~~~~--~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 256 YITM--VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEE--EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred eeEE--EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 1111 1122355544 3332 247999999999876543
No 286
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.56 E-value=4.9e-05 Score=88.40 Aligned_cols=259 Identities=8% Similarity=-0.021 Sum_probs=144.1
Q ss_pred cEEEEECCCCcEEEEEEc------CCceeeceEEeeCCcEEEEEEeCC-----EEEEEEcCCCcEEEEEecCCeeeeeee
Q 003327 497 KFICADAKRSSVLWEIKL------EGRIECSAAVLADFSQVVVGCYKG-----KIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~------~~~~~~~~~~~~~~~~v~vg~~dg-----~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
.|+..+..+|+..-.++. +......+.+++|+..|+.+..++ .|+.+|+.+|+.+-..... .-...+.
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 567776655553211211 112345678899998887766543 7999999999876432111 1124466
Q ss_pred eecCCCEEEEeccCCe----------------EEEEEcCCCe----EEEeeccCCcccccceeecCCCEEEEEec-----
Q 003327 566 VDAPRQLIWCGSHDHN----------------LYALDFRNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVAST----- 620 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~----------------l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~----- 620 (829)
+.+++..|++++.++. |+.++..+++ +++...........+.+++++..|++.+.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 7777788888776655 9999998875 33332212222345667777788877664
Q ss_pred CCeEEEEEccC------CCceEEEeeccCCcceeeeeeeecCCEEEEEeeC----CeEEEEc-CCCCE-EEEeecCC-c-
Q 003327 621 SGRLTAISVKA------LPFHTLWLHELEVPAFASLCITSANRHVICCLVD----GHVVALD-SSGSI-IWRCRTGG-P- 686 (829)
Q Consensus 621 ~g~l~~~~~~~------~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~----g~i~~~d-~~g~~-~w~~~~~~-~- 686 (829)
+..++.+|+++ ...... .+...... ....+..+++.+++.+.. +.|+.+| .++.. .|+.-... .
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWV-KLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCE-EEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred ccEEEEEECcccccccCCccceE-EeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 56799999874 111111 11111111 122356678888887653 3599999 66542 23322111 1
Q ss_pred -eeecCcccccCCCeEE-EEeeCC--eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc----
Q 003327 687 -IFAGPCTSFALPSQVL-ICSRNG--SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT---- 758 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~-~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 758 (829)
...... ...++.++ ....++ .|+.++..+|+.+..+..+......... ..++..+++..
T Consensus 336 ~~~~~~~--~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~-----------s~d~~~l~~~~ss~~ 402 (710)
T 2xdw_A 336 DVLEWVA--CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG-----------QKKDTEIFYQFTSFL 402 (710)
T ss_dssp CEEEEEE--EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC-----------CTTCSEEEEEEECSS
T ss_pred CeEEEEE--EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec-----------CCCCCEEEEEEeCCC
Confidence 222111 11244544 445565 5888898788866555544221111111 11244555442
Q ss_pred cCCcEEEEEeecC
Q 003327 759 SSGSIHILRVNLD 771 (829)
Q Consensus 759 ~~G~l~~~d~~~~ 771 (829)
..+.|+.||..++
T Consensus 403 ~P~~i~~~d~~tg 415 (710)
T 2xdw_A 403 SPGIIYHCDLTKE 415 (710)
T ss_dssp CCCEEEEEETTSS
T ss_pred CCCEEEEEECCCC
Confidence 3468999998765
No 287
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.52 E-value=4.3e-06 Score=90.80 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=114.4
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-----eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE------
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI------ 550 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~------ 550 (829)
.+.++..|.+++.+|.+..||.++ .+-.+. +.. ...+.++++++..+++|+.||.|..||..++++
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 445788899999999999999543 222234 443 245788999999999999999999999999863
Q ss_pred -EEEEecCC----eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE---Eeec-cCCcccccceeecCCCEEEEEecC
Q 003327 551 -YWTFQTCG----EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLP-CGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 551 -~w~~~~~~----~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~---w~~~-~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
+.++..+. .......+.+++ +.+++.|+.++.||..+++.. .++. .+.....+..+. ++.+.+++ +
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence 44543222 234444666544 788888999999999887732 2221 233344455555 37777776 6
Q ss_pred CeEEEEEccCCCceE-EEeeccCCcceeeeee--eecCCEEEEEeeCCe
Q 003327 622 GRLTAISVKALPFHT-LWLHELEVPAFASLCI--TSANRHVICCLVDGH 667 (829)
Q Consensus 622 g~l~~~~~~~~~g~~-~w~~~~~~~~~~s~~~--~~~~~~l~~~~~~g~ 667 (829)
+.|..||..+ ++. ..... +...+.+..+ .+++..+.++..+|.
T Consensus 245 ~tIkLWd~~~--~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 245 GYVHKIDLKN--YSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp SEEEEEETTT--TEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred CeEEEEECCC--CeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 8999999987 665 33333 3333344555 444444555444444
No 288
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=6.5e-06 Score=79.88 Aligned_cols=169 Identities=10% Similarity=0.006 Sum_probs=114.6
Q ss_pred cEEEEEecCCeee-eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCeE
Q 003327 549 DIYWTFQTCGEVK-CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGRL 624 (829)
Q Consensus 549 ~~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~l 624 (829)
+++-++....... ....++ ++.+|.++. +|.|..+|+++|+.+.+. .....+.- .... ++.||+.++ ++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 4445554443322 222333 478888654 467999999999998887 66544432 2333 478999885 5778
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecCcccccCCCeE
Q 003327 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSFALPSQV 701 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~~~~~~~~~~i 701 (829)
++||+++ ++.+-++..... ...++.+++.+|+...++.|+.+| .+.+++-+...... .+....-..-.+|.|
T Consensus 119 ~V~D~~T--l~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~l 193 (268)
T 3nok_A 119 FTWSGMP--PQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVI 193 (268)
T ss_dssp EEEETTT--TEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEECCc--CcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEE
Confidence 9999998 888887766432 234456788999998889999999 88888876665321 111100011126799
Q ss_pred EEEee-CCeEEEEeCCCCcEEEEEecC
Q 003327 702 LICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 702 ~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
|+... ++.|..+|+++|+++-.++..
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 99874 678999999999998777654
No 289
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=0.00014 Score=72.97 Aligned_cols=232 Identities=9% Similarity=-0.043 Sum_probs=129.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEE-----EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLW-----EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w-----~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.|+++.. +.|+.+|...+.... ....+......+.+..+++.||+... ++.|+.+|..++.........-...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4555553 468888876543210 01111111224556656678888765 5789999976655433222221222
Q ss_pred eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---CeEEEEEccCCCceEE
Q 003327 562 CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~ 637 (829)
...+++..++.+|+... .+.|..++............+.......+++.+++.+|++... +.|+.++++....+.+
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence 33455655678887654 5689999876432221121121222345677667899988753 6788888774211222
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEE-eecCCceeecCcccccCCCeEEEEee-CCeEEEEe
Q 003327 638 WLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWR-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d 714 (829)
... ........++..+++.+|++.. .+.|.++|.+|..... ......... +..+ ++.+|++.. ++.|+.+|
T Consensus 162 ~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~g---i~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 162 AQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFA---VTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp ECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEE---EEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceE---EEEe-CCEEEEEECCCCeEEEEe
Confidence 111 1112244556666788888765 4689999943432222 221111111 1223 678888764 57899999
Q ss_pred CCCCcEEEEEec
Q 003327 715 QESGNLLWEYSV 726 (829)
Q Consensus 715 ~~tG~~~w~~~~ 726 (829)
.++|+.+-....
T Consensus 236 ~~~g~~~~~i~~ 247 (267)
T 1npe_A 236 LAISKEMDTFHP 247 (267)
T ss_dssp TTTTEEEEEECC
T ss_pred CCCCCceEEEcc
Confidence 999998766553
No 290
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=98.47 E-value=5.1e-09 Score=108.88 Aligned_cols=125 Identities=7% Similarity=-0.042 Sum_probs=88.3
Q ss_pred ccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHcCCcchhhhcCCCHHHHHHHHHhhcCCCccccc
Q 003327 283 DETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVS 362 (829)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~ 362 (829)
...|.+++|+.|+++|+++|+++. +||||+| ++++++|+-. |++||+.+||..+
T Consensus 22 ~~~P~~~~E~~la~iw~~vL~~~~---~d~Ff~l-------~~l~~~~~~~----f~~pt~~~la~~~------------ 75 (319)
T 2hfk_A 22 SGADTGAGAGMFRALFRQAVEDDR---YGEFLDV-------LAEASAFRPQ----FASPEACSERLDP------------ 75 (319)
T ss_dssp --------CCHHHHHHHHHHHTTC---HHHHHHH-------HHHHHTTSCE----ECSGGGCCSCCCC------------
T ss_pred CCCCCCchHHHHHHHHHHHHcCCc---hHHHHHH-------HHHHHHHHHh----cCCcchhhccccc------------
Confidence 346778899999999999999876 9999999 8888887532 8999998776211
Q ss_pred cccccccCcccc-----ccccccc--CccccchhhhhhcccccCCccccCCcccccCCC----CCcc-------------
Q 003327 363 ADANWKLNLEED-----KEHQFHS--GYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG----LPWN------------- 418 (829)
Q Consensus 363 ~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~----~~~~------------- 418 (829)
........++ +++|+|+ ..+....|..+++.|..+.++|+++.+++..+. .+.+
T Consensus 76 --~~l~~~g~~~~~~~~~l~~~hg~g~~~~~~~~~~l~~~L~~~~~v~~~d~~G~g~~~~~~~~~~~~~~~~~a~~~~~~ 153 (319)
T 2hfk_A 76 --VLLAGGPTDRAEGRAVLVGCTGTAANGGPHEFLRLSTSFQEERDFLAVPLPGYGTGTGTGTALLPADLDTALDAQARA 153 (319)
T ss_dssp --EEEECCCCC-CCSCCEEEEECCCCTTCSTTTTHHHHHTTTTTCCEEEECCTTCCBC---CBCCEESSHHHHHHHHHHH
T ss_pred --EEccCCCCCCccccccEEEeCCCCCCCcHHHHHHHHHhcCCCCceEEecCCCCCCCcccccCCCCCCHHHHHHHHHHH
Confidence 0111112234 7999998 678889999999999989999999888865431 1111
Q ss_pred ------CCCCCC-eeeecccccee
Q 003327 419 ------LSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 419 ------~~~~~~-~~s~~~~~~~~ 435 (829)
..||.| |||+||.++++
T Consensus 154 i~~~~~~~p~~l~G~S~GG~vA~~ 177 (319)
T 2hfk_A 154 ILRAAGDAPVVLLGHAGGALLAHE 177 (319)
T ss_dssp HHHHHTTSCEEEEEETHHHHHHHH
T ss_pred HHHhcCCCCEEEEEECHHHHHHHH
Confidence 227888 99999998877
No 291
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.46 E-value=1.7e-07 Score=90.24 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=62.5
Q ss_pred ccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc--
Q 003327 255 LPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL-- 330 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l-- 330 (829)
-|-|.+||.++..-.. .....+++++.|+++|+++|++ ++|.++++||++|+|||.+++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~------------~~~~~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~el~~~l~~ 71 (212)
T 2l22_A 4 SHHHHHHSSGLVPRGS------------HMVADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINK 71 (212)
T ss_dssp ------------------------------CCTTHHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHHHHHHHHHH
T ss_pred ccccccccCCCCccCC------------CCCCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHHHHHHHHHH
Confidence 4667888888744322 1123467899999999999998 67999999999999999999998865
Q ss_pred ----CCcchhhhcCCCHHHHHHHHHhhcC
Q 003327 331 ----GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 331 ----~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
.++...+|++||+..|+.++.....
T Consensus 72 ~~g~~l~~~~~~~~~Ti~~la~~l~~~~~ 100 (212)
T 2l22_A 72 HYQLKIPADGIYTYPVFKAFTQWVGTQLQ 100 (212)
T ss_dssp HTTCCCCTTHHHHCCBHHHHHHHHHTTSC
T ss_pred HHCCCCCHHHHHcCCCHHHHHHHHHHhcc
Confidence 4788899999999999999987654
No 292
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=98.45 E-value=1.9e-07 Score=73.54 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 289 DLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++++.++++|+++++. +.+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 3 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 76 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGH 76 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 4678899999999987 5789999998 9999999999998765 47778899999999999999765
No 293
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.44 E-value=5.4e-05 Score=88.44 Aligned_cols=105 Identities=7% Similarity=-0.055 Sum_probs=72.8
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCc--e---eeceEEeeCCcEEEEEEeC---------CEEEEEEcCCCcEE
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--I---ECSAAVLADFSQVVVGCYK---------GKIYFLDYLTGDIY 551 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~---~~~~~~~~~~~~v~vg~~d---------g~l~~~d~~tG~~~ 551 (829)
+..++.+ ++.|+.||..||+..-.+..+.. . .....+++|++.|++++.+ +.++.||.++|+..
T Consensus 28 g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 28 HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 3445554 78999999999987644443321 1 0125678999998888764 66789999999865
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003327 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
. ..........+.+++++..|.+++ ++.||.+|..+|+...
T Consensus 106 ~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 106 T-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp C-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred E-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 3 222233456678888887777764 6789999999887554
No 294
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.43 E-value=3.5e-06 Score=98.45 Aligned_cols=132 Identities=9% Similarity=-0.079 Sum_probs=88.7
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeCCcEEEEEEe---------CCEEEEEEcCCCcEEEEEe
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLADFSQVVVGCY---------KGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~v~vg~~---------dg~l~~~d~~tG~~~w~~~ 555 (829)
.++..+.++.|+.||..+|+..-.+..+.. ...++.+++|++.|++++. ++.|+.||..+|+.+....
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 444455688999999999987654433221 1346789999998888765 6899999999997732112
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--c----------------cccceeecCCCEEEE
Q 003327 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--I----------------FGSPAIDEVHDVLYV 617 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~----------------~~~~~~~~~~~~l~v 617 (829)
.... ...+.+++++..|.++. ++.|+.||..+|+.......+.. + ...+.+++++..|++
T Consensus 108 l~~~-~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 108 LPRP-IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CCSS-BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cCcc-cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 2222 34567777777777765 67999999998876543222211 0 136778887888887
Q ss_pred EecC
Q 003327 618 ASTS 621 (829)
Q Consensus 618 ~t~~ 621 (829)
++.+
T Consensus 186 ~~~d 189 (719)
T 1z68_A 186 AEFN 189 (719)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7643
No 295
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=98.43 E-value=1.7e-07 Score=74.50 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 288 SDLLQVIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++++.+.++|++.++++ .+.++++|+++|+|||.+++|...| .++...++.++|+..|+.++.+..
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 78 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLL 78 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHH
Confidence 567889999999999985 7999999999999999999998765 477888999999999999987653
No 296
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.42 E-value=6.9e-05 Score=86.41 Aligned_cols=226 Identities=9% Similarity=0.007 Sum_probs=128.5
Q ss_pred EEEecCCCcEEEEECC--C-CcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeC----------CEEEEEEcCC---
Q 003327 489 LFVGSHSHKFICADAK--R-SSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYK----------GKIYFLDYLT--- 547 (829)
Q Consensus 489 l~igs~~g~l~~~d~~--t-g~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~d----------g~l~~~d~~t--- 547 (829)
+|....+..|+.+|.. + ++.. .+.. +......+.+++|++.|++.+.+ ..|+.||..+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 4443346779999976 3 5543 2222 23344577899999999888776 5899999988
Q ss_pred ---CcEEEEEe-cCCeeeeeeeeecCCCEEEEeccC--------CeEEEEEcC-CC---eEEEeeccCCcccccceeecC
Q 003327 548 ---GDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSHD--------HNLYALDFR-NY---RCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 548 ---G~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~~--------g~l~~~d~~-tg---~~~w~~~~~~~~~~~~~~~~~ 611 (829)
|+... .. .+......+.+++++..|++.+.+ ..|+.+|.. +| +..............+.++++
T Consensus 174 ~~~~~~~~-l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 174 ADRSAVRE-LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp TCGGGSEE-SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ccCCceeE-EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 66643 22 233445567788888888776644 379999998 67 443333222334456677766
Q ss_pred CCEEEEEecCC--eEEEEEccCCCceEEEeeccCCcc--------eeeeeeeecCCEEEEEeeCCe--EEEEc-CCCCEE
Q 003327 612 HDVLYVASTSG--RLTAISVKALPFHTLWLHELEVPA--------FASLCITSANRHVICCLVDGH--VVALD-SSGSII 678 (829)
Q Consensus 612 ~~~l~v~t~~g--~l~~~~~~~~~g~~~w~~~~~~~~--------~~s~~~~~~~~~l~~~~~~g~--i~~~d-~~g~~~ 678 (829)
+..++++..++ .|+.+|.++ |+........... ..+..+.+++..++.++. +. |+.+| .+|+ +
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~ 328 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L 328 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E
T ss_pred CeEEEEECCCCCeEEEEEECCC--CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E
Confidence 66555555566 788888765 5543222211111 122334445566666655 54 45556 4444 4
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEE
Q 003327 679 WRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNLL 721 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~ 721 (829)
.++......... +...+.+..+++.+.. ..|+.+|..+|+..
T Consensus 329 ~~l~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 329 VDAAGPWTEWAA-TLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EECCSSCCEEEE-EEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEecCCCCeEEE-EEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 444332222111 1022223344444333 36899998888764
No 297
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=98.38 E-value=4.5e-07 Score=71.91 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++++.++++|+++++. +.+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 4 ~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 79 (81)
T 2lol_A 4 TDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKER 79 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 356888999999999987 4699999996 9999999999998765 47788899999999999998764
No 298
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.38 E-value=4.9e-05 Score=88.41 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=124.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE----------------EEEEEcCCCcE--EEEEecC-
Q 003327 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK----------------IYFLDYLTGDI--YWTFQTC- 557 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~----------------l~~~d~~tG~~--~w~~~~~- 557 (829)
.|+.+|+.+|+.+-....... ..++.+++|++.|+.++.++. |+.++..+++. ...+...
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCcccccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 799999999987643211111 246788889999998887765 99999988862 2222222
Q ss_pred -CeeeeeeeeecCCCEEEEecc-----CCeEEEEEcCC------CeE-EEeeccCCcccccceeecCCCEEEEEecC---
Q 003327 558 -GEVKCQPVVDAPRQLIWCGSH-----DHNLYALDFRN------YRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTS--- 621 (829)
Q Consensus 558 -~~~~~~~~~~~~~~~i~~gs~-----~g~l~~~d~~t------g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--- 621 (829)
......+.++++++.|++.+. +..|+.+|..+ |+. ...+..+.... ...++.+++.+|+.+..
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCC
Confidence 223345667777888877654 56799999887 531 12222221111 12345556888877653
Q ss_pred -CeEEEEEccCCCceE-EEeecc-CCc--ceeeeeeeecCCEE-EEEeeCC--eEEEEc-CCCCEEEEeecCCceeecCc
Q 003327 622 -GRLTAISVKALPFHT-LWLHEL-EVP--AFASLCITSANRHV-ICCLVDG--HVVALD-SSGSIIWRCRTGGPIFAGPC 692 (829)
Q Consensus 622 -g~l~~~~~~~~~g~~-~w~~~~-~~~--~~~s~~~~~~~~~l-~~~~~~g--~i~~~d-~~g~~~w~~~~~~~~~~~~~ 692 (829)
+.|+.+++++ +.. .|+.-. ... ......+. +++.+ +....++ .|+.++ .+|+.+..+...........
T Consensus 310 ~~~l~~~d~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~ 386 (710)
T 2xdw_A 310 NYRLINIDFTD--PEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS 386 (710)
T ss_dssp TCEEEEEETTS--CCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE
T ss_pred CCEEEEEeCCC--CCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEe
Confidence 3599999876 431 232211 111 22333443 34444 4444555 467788 68886666554321111111
Q ss_pred ccccCCCeEEEEee----CCeEEEEeCCCCc
Q 003327 693 TSFALPSQVLICSR----NGSIYSFEQESGN 719 (829)
Q Consensus 693 ~~~~~~~~i~~~t~----~g~l~~~d~~tG~ 719 (829)
.. ..+..+++... -+.|+.+|..+|+
T Consensus 387 ~s-~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 387 GQ-KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC-TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cC-CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 11 12345665533 3689999999887
No 299
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=98.38 E-value=3.2e-07 Score=72.01 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.++++|+++++. +.+.++++| +++|+|||.+++|...+ .++...++.++|+..|+.++.+..
T Consensus 2 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~~ 75 (77)
T 2ehs_A 2 LEERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKV 75 (77)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 567889999999987 468999999 99999999999998765 477888999999999999997653
No 300
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=98.37 E-value=5.4e-07 Score=71.69 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 287 ASDLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++++.+.++|++.++.+ .+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 5 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2cnr_A 5 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 80 (82)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHH
Confidence 3568889999999999874 799999997 9999999999998865 47788899999999999998764
No 301
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.36 E-value=0.00028 Score=73.74 Aligned_cols=204 Identities=8% Similarity=0.010 Sum_probs=118.2
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---C--EEEEEEcCCCcEEEEEecCCeeeeeeeeecC
Q 003327 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---G--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP 569 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 569 (829)
++.|+.+|+.+|+... + .....+.++++++.|+..+.+ + .|+.+|..+|+.......+. ...+.+.++
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCC
Confidence 4579999998887542 2 223467889998887776653 2 49999998888765544433 556677777
Q ss_pred CCEEEEeccC---------------------------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-
Q 003327 570 RQLIWCGSHD---------------------------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS- 621 (829)
Q Consensus 570 ~~~i~~gs~~---------------------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~- 621 (829)
+..|++.+.+ ..|+.+|..+|+.+..+.. . ....+.+++++ .++++..+
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~ 191 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHRE 191 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccc
Confidence 7777776532 5699999999987333333 2 44455666655 55655432
Q ss_pred --------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--------CeEEEEcCCCCEEEEeecC-
Q 003327 622 --------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--------GHVVALDSSGSIIWRCRTG- 684 (829)
Q Consensus 622 --------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--------g~i~~~d~~g~~~w~~~~~- 684 (829)
..|+.+| + |+....... ..... +++++..+++.+.+ ..|+.+| +|+........
T Consensus 192 ~~~~~~~~~~l~~~d--~--~~~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~ 262 (347)
T 2gop_A 192 IIPQYFKFWDIYIWE--D--GKEEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVD 262 (347)
T ss_dssp SSCCSSCCEEEEEEE--T--TEEEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCC
T ss_pred ccccccccccEEEeC--C--CceEEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCC
Confidence 2577777 4 554322221 11122 26677777666533 4688888 55543222111
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003327 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
..+...+. .. ++.++.++.++.+..| ..+|+..
T Consensus 263 ~~~~~~~~--~s-dg~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 263 RGVGQAKI--KD-GKVYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp SEEEEEEE--ET-TEEEEEEEETTEEEEE-EESSSEE
T ss_pred cccCCccE--Ec-CcEEEEEecCCcEEEE-EcCCceE
Confidence 12221122 22 4455566667755444 3356653
No 302
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.35 E-value=7.4e-05 Score=86.61 Aligned_cols=155 Identities=7% Similarity=0.038 Sum_probs=91.7
Q ss_pred eeeeeeecCCCEEEEe-----ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe------------
Q 003327 561 KCQPVVDAPRQLIWCG-----SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR------------ 623 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~g-----s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~------------ 623 (829)
...+.+++++..|.+. +.+..|+.+|.++|+.+-...........+..++++..++.++.+..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 4556677777766643 23357999999999864111112222256778887788888777554
Q ss_pred -EEEEEccCCCc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCC----eEEEEc-CCCCEEEEeecCCceeecCcccc
Q 003327 624 -LTAISVKALPF--HTLWLHELEVPAFASLCITSANRHVICCLVDG----HVVALD-SSGSIIWRCRTGGPIFAGPCTSF 695 (829)
Q Consensus 624 -l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~ 695 (829)
|+.+++.+... ..+...........++.+++++..+++.+.++ .|+.++ .+++...-......... +..
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~-- 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE-VHA-- 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE-EEE--
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE-EEe--
Confidence 99999887221 13333222222345677788888888877655 688888 56654322211111111 111
Q ss_pred cCCCeEEEEee----CCeEEEEeCCCCc
Q 003327 696 ALPSQVLICSR----NGSIYSFEQESGN 719 (829)
Q Consensus 696 ~~~~~i~~~t~----~g~l~~~d~~tG~ 719 (829)
..++ +|+.+. ++.|+.+|.++++
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 1234 777664 5789999988775
No 303
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.35 E-value=0.00017 Score=83.15 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=95.1
Q ss_pred eCCcE-EEEEEe-CCEEEEEEcC--C-CcEEEEEec-----CCeeeeeeeeecCCCEEEEeccC----------CeEEEE
Q 003327 526 ADFSQ-VVVGCY-KGKIYFLDYL--T-GDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHD----------HNLYAL 585 (829)
Q Consensus 526 ~~~~~-v~vg~~-dg~l~~~d~~--t-G~~~w~~~~-----~~~~~~~~~~~~~~~~i~~gs~~----------g~l~~~ 585 (829)
+|++. |+..+. +..|+.++.. + |+... ... +......+.+++++..|++.+.+ ..|+.|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~-l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP-LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE-CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe-ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 67777 665543 5679999976 3 55432 222 23445667788888888887765 479999
Q ss_pred EcCC------CeEEEeeccCCcccccceeecCCCEEEEEecC--------CeEEEEEcc-CCCc---eEEEeeccCCcce
Q 003327 586 DFRN------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--------GRLTAISVK-ALPF---HTLWLHELEVPAF 647 (829)
Q Consensus 586 d~~t------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--------g~l~~~~~~-~~~g---~~~w~~~~~~~~~ 647 (829)
|..+ |+.......+......+.+++++..|++.+.+ ..|+.+|++ + | +............
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED--GRFADTRTLLGGPEEAI 244 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEEEEEEEEEETTBCE
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC--CcccccEEeCCCCCceE
Confidence 9988 66543220333455667888888888777644 379999988 5 5 3222222212334
Q ss_pred eeeeeeecCCEEEEEeeCC--eEEEEc-CCCCEE
Q 003327 648 ASLCITSANRHVICCLVDG--HVVALD-SSGSII 678 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g--~i~~~d-~~g~~~ 678 (829)
..+.+++++..++.+..++ .|+.+| .+|+..
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 5666777777555555555 788888 677653
No 304
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.31 E-value=6.3e-06 Score=96.22 Aligned_cols=140 Identities=10% Similarity=0.003 Sum_probs=92.0
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe---eeeeeeeecCCCEEEEecc---------CCeEEEEEcC
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE---VKCQPVVDAPRQLIWCGSH---------DHNLYALDFR 588 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~i~~gs~---------~g~l~~~d~~ 588 (829)
++.+++++ .++..+.|+.|+.||..+|+.......+.. ....+.+++++..|++++. ++.|+.||.+
T Consensus 20 ~~~~s~dg-~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQ-EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSS-EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCC-eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 45666776 444455689999999999988755443221 1345677778888887765 6889999999
Q ss_pred CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc--c----------------eeee
Q 003327 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--A----------------FASL 650 (829)
Q Consensus 589 tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~--~----------------~~s~ 650 (829)
+|+.+...... .....+.+++++..|+++. ++.|+.++..+ |+.......... . ..++
T Consensus 99 ~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 99874222222 2345677888777777765 67899999876 554321111111 0 1356
Q ss_pred eeeecCCEEEEEeeC
Q 003327 651 CITSANRHVICCLVD 665 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~ 665 (829)
.+++++..+++++.+
T Consensus 175 ~wSPDG~~la~~~~d 189 (719)
T 1z68_A 175 WWSPNGKFLAYAEFN 189 (719)
T ss_dssp EECTTSSEEEEEEEE
T ss_pred EECCCCCEEEEEEEC
Confidence 778888888887754
No 305
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.31 E-value=0.0001 Score=85.43 Aligned_cols=185 Identities=10% Similarity=-0.047 Sum_probs=106.6
Q ss_pred CCeEEEEecCC-----CcEEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEe-C----CEEEEEEcCCC
Q 003327 485 SDIYLFVGSHS-----HKFICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCY-K----GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~-d----g~l~~~d~~tG 548 (829)
+++++|....+ +.|+..+..+|+..--++.. .....++.+++|++.|..... + ..|+.+|+.+|
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 34455544432 34677776656532222211 113457788999888765433 2 47999999999
Q ss_pred cEE-EEEecCCeee-eeeeeecCCCEEEEeccCCe-------------EEEEEcCCCe----EEEeeccCCcccccceee
Q 003327 549 DIY-WTFQTCGEVK-CQPVVDAPRQLIWCGSHDHN-------------LYALDFRNYR----CVYKLPCGGSIFGSPAID 609 (829)
Q Consensus 549 ~~~-w~~~~~~~~~-~~~~~~~~~~~i~~gs~~g~-------------l~~~d~~tg~----~~w~~~~~~~~~~~~~~~ 609 (829)
+.+ -. ... ... ..+.+.+++..|++++.+.. |+.++..+++ ++.....+......+.++
T Consensus 158 ~~~~~~-~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 158 EWSKVD-VIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp CBCSSC-CBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCcCCc-ccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 874 11 111 121 45677777778888777655 9999998875 444332222344566777
Q ss_pred cCCCEEEEEecCC----eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee----CCeEEEEc-CCCC
Q 003327 610 EVHDVLYVASTSG----RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV----DGHVVALD-SSGS 676 (829)
Q Consensus 610 ~~~~~l~v~t~~g----~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~----~g~i~~~d-~~g~ 676 (829)
+++..|++.+.++ .|+.++..+ ++........... ..+. ..+++ +++.+. ++.|+.+| .+++
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGE--KDFRLLVKGVGAK-YEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTC--SSCEEEEECSSCC-EEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCC--CceEEeecCCCce-EEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 7777777766555 677776544 4322211111111 2222 24555 766654 57899999 6654
No 306
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.30 E-value=8e-07 Score=85.48 Aligned_cols=69 Identities=14% Similarity=0.352 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+...+++.++++|+++|++ +.++.+++||++|+|||.+++|...| .++...+|++||+..|+.+|.+..
T Consensus 127 ~~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~ 203 (212)
T 2l22_A 127 QRESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRV 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 3467888999999999998 67999999999999999999998765 478889999999999999998754
No 307
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=98.29 E-value=7e-07 Score=70.64 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
+++++.+.++|+++++. +.+.++++| +++|+|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 78 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAK 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999987 468999999 99999999999998765 47788899999999999998764
No 308
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.28 E-value=7.4e-05 Score=87.29 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=74.3
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--e-e--eeeeeecCCCEEEEeccC---------CeEEEEE
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--V-K--CQPVVDAPRQLIWCGSHD---------HNLYALD 586 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~-~--~~~~~~~~~~~i~~gs~~---------g~l~~~d 586 (829)
++.+++++..++.+ |+.|+.||..+|+..-.+..+.. . . ....+++++..|++++.+ +.++.||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 56777777666664 89999999999987655443321 1 1 114567778888887654 5678999
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.++|++.. +.........+.+++++..|..+. ++.|+.++..+
T Consensus 99 ~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 99 LNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp TTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred CCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 99998653 322233456778888788776664 67899999876
No 309
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=71.48 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003327 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..+++++.+.++|++++++ +.|.++++|| ++|+|||.+++|...| .++...++.++|+..|+.++.+...
T Consensus 12 ~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 90 (99)
T 2dnw_A 12 TLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKD 90 (99)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHHhc
Confidence 3567889999999999987 5799999997 9999999999998765 3677789999999999999987653
No 310
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=98.23 E-value=1.5e-06 Score=68.96 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHHHhcccCcc--eeccCCCccc-cCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 291 LQVIRKAFGHALMVE--EVLHHDNFFT-MGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 291 ~~~l~~~~~~~l~~~--~i~~~~~Ff~-lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+.|.++|+++|+++ .|.++.+|++ +|.|||.+++|+.+| .++...+++.+|+..|+.++.++.
T Consensus 4 le~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I~~kl 76 (87)
T 2kjs_A 4 LDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKL 76 (87)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHHHHHH
Confidence 568899999999985 4788889998 699999999998765 478889999999999999998764
No 311
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.21 E-value=0.0011 Score=68.07 Aligned_cols=230 Identities=12% Similarity=0.020 Sum_probs=122.4
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCC----CcEEEEEecCCeeeee
Q 003327 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLT----GDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~t----G~~~w~~~~~~~~~~~ 563 (829)
|++++. +.|..+|+.+++..-........ ..+.+...++.||+... ++.|+.++..+ ..........-.....
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p-~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRNV-VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCSSE-EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCCce-EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 444444 45999999877654333222222 24556555667777654 57899999765 1222212211111223
Q ss_pred eeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEee
Q 003327 564 PVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~ 640 (829)
.+++..++.||+. ...+.|..+|....................++++.++.+|++... +.|+.++.+ |+.....
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---G~~~~~~ 158 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIYSL 158 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCCEEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---CCCeEEE
Confidence 3455446677765 456789999976543332222222222345677667888887753 689999887 3322111
Q ss_pred -ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCC
Q 003327 641 -ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 641 -~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
..........++..+++.+|+... .+.|..+|.+|.....+.........|. +..+ ++.+|+.. .++.|..+|+.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 111111234556656788888764 4689999844532222211100011111 1122 46777664 46789999988
Q ss_pred CCcEEEEE
Q 003327 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 238 ~g~~~~~i 245 (316)
T 1ijq_A 238 TGSDVNLL 245 (316)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEE
Confidence 88765433
No 312
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.18 E-value=0.0006 Score=71.16 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=79.8
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---C--eEEEEEcCCCeEEEeeccCCcccccceeecC
Q 003327 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---H--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~ 611 (829)
++.|+.+|..+|+... + .....+.+++++..|++.+.+ + .|+.+|..+|+......... ...+.++++
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCC
Confidence 5679999998887643 2 223456777777777776543 2 49999999988765544433 556677776
Q ss_pred CCEEEEEecC---------------------------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003327 612 HDVLYVASTS---------------------------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 612 ~~~l~v~t~~---------------------------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
+..|++.+.+ ..|+.+|+.+ |+.+...... ....+.+.+++ .++++..
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~~--~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEKP--RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--TEEEEEEEEE--TTCEEEEETTE-EEEEEEC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeecCC--CcccccCCCCe-EEEEEec
Confidence 7777776532 4688999887 6652222221 33455566665 5555543
Q ss_pred C---------CeEEEEcCCCCE
Q 003327 665 D---------GHVVALDSSGSI 677 (829)
Q Consensus 665 ~---------g~i~~~d~~g~~ 677 (829)
+ ..|+.+| +|+.
T Consensus 190 ~~~~~~~~~~~~l~~~d-~~~~ 210 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE-DGKE 210 (347)
T ss_dssp CCSSCCSSCCEEEEEEE-TTEE
T ss_pred ccccccccccccEEEeC-CCce
Confidence 2 2466666 5543
No 313
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.18 E-value=0.0009 Score=78.03 Aligned_cols=153 Identities=8% Similarity=-0.052 Sum_probs=92.8
Q ss_pred eeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCe-----------
Q 003327 518 IECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN----------- 581 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~----------- 581 (829)
....+.+++|++.|..+..+ ..|+.+|+.+|+.+-.. ........+.+.++ ..|++++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 34567888998887776543 35999999999886431 11111135667777 77777765543
Q ss_pred ---EEEEEcCCCe----EEEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccCCCceEE-E-eeccCCcce
Q 003327 582 ---LYALDFRNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKALPFHTL-W-LHELEVPAF 647 (829)
Q Consensus 582 ---l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~~~g~~~-w-~~~~~~~~~ 647 (829)
|+.++..++. +++...........+.+++++..|++.+.+ ..|+.+|+++ +... + .+.......
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~--~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN--GKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET--TEECCCEEEECSSSSC
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC--CCCcccEEecCCCCce
Confidence 8899987764 333322221234556677777777776644 3799999887 4211 1 121111111
Q ss_pred eeeeeeecCCEEEEEeeC----CeEEEEc-CCC
Q 003327 648 ASLCITSANRHVICCLVD----GHVVALD-SSG 675 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~----g~i~~~d-~~g 675 (829)
..+ +..+++.+++.+.. +.|+.+| .++
T Consensus 320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 222 34678888888753 4599998 554
No 314
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.17 E-value=0.00032 Score=75.85 Aligned_cols=114 Identities=11% Similarity=-0.028 Sum_probs=80.7
Q ss_pred eCCCeEEE----EecCCCcEEEEECCCC--------cEEEEEEc---CCceeeceEEeeC-CcEEEEEEeCCEEEEEEcC
Q 003327 483 KDSDIYLF----VGSHSHKFICADAKRS--------SVLWEIKL---EGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYL 546 (829)
Q Consensus 483 ~d~~~~l~----igs~~g~l~~~d~~tg--------~~~w~~~~---~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~ 546 (829)
+.++..|+ .|+.++.|..||..++ +.+..... +.....+..+.++ +..+++++.|+.|+.||.+
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 34566777 5778999999998765 33233332 2333456677776 6788889999999999999
Q ss_pred CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003327 547 TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 547 tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
+++.......+........+.+++..|++|+.||.|+.||.+ ++....+.
T Consensus 181 ~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 181 ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 987665444333344555677778899999999999999988 65554443
No 315
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=98.14 E-value=2.1e-06 Score=67.84 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++++.+++++++.+++ +.+.++.+|+ ++|.|||.+++|...| .++...++.++|+..|+.++.++.
T Consensus 3 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (81)
T 3gzm_A 3 LKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHh
Confidence 457888999999999987 5699999997 9999999999998765 467788999999999999998754
No 316
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=98.11 E-value=1.3e-06 Score=69.50 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCcc---eec--cCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMVE---EVL--HHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~---~i~--~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.++++|++.++.+ .+. ++.+|+++|+|||.+++|...| .++...++.++|+..++.++.++.
T Consensus 5 ~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 80 (83)
T 1or5_A 5 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 80 (83)
T ss_dssp CHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHHh
Confidence 4677889999999874 577 8899999999999999998875 367778999999999999987643
No 317
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.10 E-value=0.0022 Score=64.03 Aligned_cols=194 Identities=10% Similarity=-0.083 Sum_probs=110.5
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeee
Q 003327 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++.||+... ++.|+.+|..++................++..+++.+|+... .+.|+.+|..................
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~ 125 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR 125 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc
Confidence 4677887764 578999998765543222222112224456556678888765 46899999653322222222212223
Q ss_pred eeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEE
Q 003327 563 QPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w 638 (829)
...+++.++.+|+.... +.|+.++.......-...........++++.+++.||++.. .+.|+.++++. +....
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~ 203 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--PGRRK 203 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--EEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC--CceEE
Confidence 34566567888887653 67888886532211111111122334566766788988765 46899999874 33222
Q ss_pred eeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec
Q 003327 639 LHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~ 683 (829)
..... ..... +..+++.+|++.. ++.|..+| .+|+.+-....
T Consensus 204 ~~~~~-~~P~g--i~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 204 VLEGL-QYPFA--VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEECC-CSEEE--EEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EecCC-CCceE--EEEeCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 22211 11122 3345788888875 47899999 78887766544
No 318
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=98.09 E-value=1.8e-06 Score=68.31 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHh
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLE 352 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~ 352 (829)
.+++++.++++|++.++. +.+.++++| +++|+|||.+++|...| .++...++.++|+..++.++.+
T Consensus 5 ~~~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (81)
T 1f80_D 5 SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN 79 (81)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHh
Confidence 356888999999999987 468999999 99999999999998765 4677789999999999988754
No 319
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.08 E-value=0.0026 Score=66.77 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=118.0
Q ss_pred CCeEEEEec-CCCcEEEEECCCC----cEEEEEE-------cCCceeeceEEeeCCcEEEEEEeC-------CEEEEEEc
Q 003327 485 SDIYLFVGS-HSHKFICADAKRS----SVLWEIK-------LEGRIECSAAVLADFSQVVVGCYK-------GKIYFLDY 545 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg----~~~w~~~-------~~~~~~~~~~~~~~~~~v~vg~~d-------g~l~~~d~ 545 (829)
++.++|+.. .+++|+.+|..+. ++.-... .+..---...+.+++ +++.+.. ++|..+|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 577888866 4688999998755 3332221 011000122345665 6664432 58999999
Q ss_pred CCCcEEEEEecCCe---eeeeeeeecCCCEEEEec-------------------cCCeEEEEEcCCCeEEEeeccCCc--
Q 003327 546 LTGDIYWTFQTCGE---VKCQPVVDAPRQLIWCGS-------------------HDHNLYALDFRNYRCVYKLPCGGS-- 601 (829)
Q Consensus 546 ~tG~~~w~~~~~~~---~~~~~~~~~~~~~i~~gs-------------------~~g~l~~~d~~tg~~~w~~~~~~~-- 601 (829)
+|++++-+...+.. .....-+.++.+.+++.. ..+.|+.||..+++.+.++..+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999877654321 111123355667777764 367899999999998888877521
Q ss_pred ccc--cceeecCCCEEEEEe------cCCeEEEEEccCCCceEE--EeeccC------------------Ccceeeeeee
Q 003327 602 IFG--SPAIDEVHDVLYVAS------TSGRLTAISVKALPFHTL--WLHELE------------------VPAFASLCIT 653 (829)
Q Consensus 602 ~~~--~~~~~~~~~~l~v~t------~~g~l~~~~~~~~~g~~~--w~~~~~------------------~~~~~s~~~~ 653 (829)
.-. ..++++++..+|++. .++.|..|..+. |+.. ..+... ......+.++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 111 123466778899887 456787766654 4311 111111 1122455677
Q ss_pred ecCCEEEEEee-CCeEEEEc-C---CCCEEEEeecC
Q 003327 654 SANRHVICCLV-DGHVVALD-S---SGSIIWRCRTG 684 (829)
Q Consensus 654 ~~~~~l~~~~~-~g~i~~~d-~---~g~~~w~~~~~ 684 (829)
.+++.+|+++. .+.|.+|| . +.+++-+..++
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 88999999986 46788888 4 23555555554
No 320
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=98.07 E-value=4e-06 Score=66.47 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..++++.+++++++.+++ ..+.++++|| ++|.|||.+++|...| .++...++.++|+..++.++.++
T Consensus 5 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2qnw_A 5 DRPLLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKA 80 (82)
T ss_dssp SHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHh
Confidence 456888999999999987 5789999995 9999999999998765 46778899999999999998765
No 321
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=98.06 E-value=2.9e-06 Score=69.08 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHhcccCcc------eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 291 LQVIRKAFGHALMVE------EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 291 ~~~l~~~~~~~l~~~------~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+.++++|.++++.. .+.++++|+++|+|||.+++|..+| .++...++.++|+..|+.++....
T Consensus 6 ~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 81 (95)
T 1nq4_A 6 LSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp HHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHH
Confidence 355677777777753 6889999999999999999998765 467788999999999999997654
No 322
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.06 E-value=0.0014 Score=76.31 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=88.7
Q ss_pred eeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe------------
Q 003327 561 KCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR------------ 623 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~------------ 623 (829)
...+.+++++..|.+++.+ ..|+.+|.++|+.+-.. ........+..+++ +.|++++.++.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 4456677777776665433 35999999999875431 11122356777777 88887775443
Q ss_pred --EEEEEccCCCc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCC-----eEEEEc-CCC--C-EEEEeecCCceeec
Q 003327 624 --LTAISVKALPF--HTLWLHELEVPAFASLCITSANRHVICCLVDG-----HVVALD-SSG--S-IIWRCRTGGPIFAG 690 (829)
Q Consensus 624 --l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-----~i~~~d-~~g--~-~~w~~~~~~~~~~~ 690 (829)
|+.+++.+... ..++..........++.+++++..+++.+.++ .|+.+| .++ + .. .+.........
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~ 321 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-ALIPDLKAQWD 321 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-EEECSSSSCEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-EecCCCCceEE
Confidence 88888766211 13332221111245667777888888777543 789998 666 3 22 22211111111
Q ss_pred CcccccCCCeEEEEeeC----CeEEEEeCCCC
Q 003327 691 PCTSFALPSQVLICSRN----GSIYSFEQESG 718 (829)
Q Consensus 691 ~~~~~~~~~~i~~~t~~----g~l~~~d~~tG 718 (829)
++ ...++.+++.+.. +.|+.+|..++
T Consensus 322 ~~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 322 FV--DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EE--EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EE--eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 11 1235678887753 45999998775
No 323
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.02 E-value=0.00087 Score=77.38 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=123.4
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-------------EEEEEEcCCCcE--EEEEecCC--
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-------------KIYFLDYLTGDI--YWTFQTCG-- 558 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-------------~l~~~d~~tG~~--~w~~~~~~-- 558 (829)
..|+.+|+.||+.+-. .....-..++.++ |++.|+..+.+. .||.++..++.. .-.+....
T Consensus 155 ~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 155 REIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred EEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 4699999999996532 1221112467888 888888888763 499999877642 22222222
Q ss_pred -eeeeeeeeecCCCEEEEecc----CCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecC----CeEEEEE
Q 003327 559 -EVKCQPVVDAPRQLIWCGSH----DHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTS----GRLTAIS 628 (829)
Q Consensus 559 -~~~~~~~~~~~~~~i~~gs~----~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~----g~l~~~~ 628 (829)
.....+.+++++..|++... ...++.+|..+++. ...+.........+ +..+++.+|+.+.. +.|+.++
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d 311 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD 311 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 22345566777777766432 24799999877632 12222222222222 33446778777643 5799999
Q ss_pred ccCCCceE-EEee-ccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEeecCCc--eeecCcccccCCCeE
Q 003327 629 VKALPFHT-LWLH-ELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCRTGGP--IFAGPCTSFALPSQV 701 (829)
Q Consensus 629 ~~~~~g~~-~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~~~~~--~~~~~~~~~~~~~~i 701 (829)
+++ +.. .|+. ........ .+..+++.+++...++ .|+.++.+|........+.. +.... . ...++.+
T Consensus 312 ~~~--~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~-~-~~d~~~l 385 (693)
T 3iuj_A 312 AAN--PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFN-G-KHDDPAL 385 (693)
T ss_dssp TTS--CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECC-C-CTTCSCE
T ss_pred CCC--CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeee-c-CCCCCEE
Confidence 886 432 2322 11111112 5566677777665544 57888844555444443321 21111 1 1124566
Q ss_pred EEEeeC----CeEEEEeCCCCcEE
Q 003327 702 LICSRN----GSIYSFEQESGNLL 721 (829)
Q Consensus 702 ~~~t~~----g~l~~~d~~tG~~~ 721 (829)
++...+ +.++.+|..+|+..
T Consensus 386 ~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 386 YFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEecCCCCCCEEEEEECCCCeEE
Confidence 666554 78999999888754
No 324
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=98.02 E-value=8.2e-06 Score=69.28 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..++++.++++|++++++ ..+.++++|| ++|+|||.+++|...| .++...++.++|+..|+.++.....
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 82 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEE 82 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHHc
Confidence 356888999999999987 4689999996 9999999999998765 3677789999999999999987664
No 325
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=97.98 E-value=3.9e-07 Score=71.87 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhcccCcc--eeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 288 SDLLQVIRKAFGHALMVE--EVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~--~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
+++++.++++|+++++.+ .+.++++| +++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 3 ~~i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 77 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKA 77 (79)
T ss_dssp THHHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 367889999999999874 79999999 99999999998876543 46778899999999999998764
No 326
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.98 E-value=0.0027 Score=64.91 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=104.6
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCC-e
Q 003327 485 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCG-E 559 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~-~ 559 (829)
.++.||+.. .++.|+.+|..+ +.......+.. ....++..++ .+|++... ..|+.+|..+|++........ .
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~-p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 117 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGK-VSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 117 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSE-EEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCC-ceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc
Confidence 456688876 678999999875 44433444433 2344555565 47887643 259999988998765444322 1
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCe-EEEeecc-------CCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003327 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYR-CVYKLPC-------GGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~-~~w~~~~-------~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
....+.. ..++.+|+.. .++.||.+|..+++ .+|.... ........-++.+++.+|++.. .+.|++|+.
T Consensus 118 ~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 118 FLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp CEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEB
T ss_pred ccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEe
Confidence 1122222 2356677765 47899999988764 2332110 0111111112444678888764 568999998
Q ss_pred cCCCceE----EEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCE
Q 003327 630 KALPFHT----LWLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSI 677 (829)
Q Consensus 630 ~~~~g~~----~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~ 677 (829)
+.. |+. .+. ....+ ...++.. ++.+|++.. ++.|.+++.+|+.
T Consensus 197 ~~~-g~~~~~~~~~-~~~~P--~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~ 244 (306)
T 2p4o_A 197 DST-DKPGEPEIFV-EQTNI--DDFAFDV-EGNLYGATHIYNSVVRIAPDRST 244 (306)
T ss_dssp CTT-SCBCCCEEEE-ESCCC--SSEEEBT-TCCEEEECBTTCCEEEECTTCCE
T ss_pred CCC-CCCCccEEEe-ccCCC--CCeEECC-CCCEEEEeCCCCeEEEECCCCCE
Confidence 741 321 111 11111 2234443 457888865 5789999966876
No 327
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.96 E-value=0.0022 Score=65.53 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=104.9
Q ss_pred ceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEee
Q 003327 521 SAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~ 596 (829)
.+++..++ .+|+.. .++.|+.+|..+ +........... ....+.. ++.+|++... ..++.+|..+|+.....
T Consensus 36 gia~~~~g-~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p-~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 36 NLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHATVEGKV-SGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEECSSEE-EEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEEECCCC-CEEEEeCCCCeEEEECCCC-ceEEEEeCCCCc-eeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 45565554 477765 578999999654 444334444332 2333443 4557887643 25899998898875443
Q ss_pred ccCCc-ccccceeecCCCEEEEEe-cCCeEEEEEccCCCce-EEEeecc-------CCcceeeeeeeecCCEEEEEee-C
Q 003327 597 PCGGS-IFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFH-TLWLHEL-------EVPAFASLCITSANRHVICCLV-D 665 (829)
Q Consensus 597 ~~~~~-~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~-~~w~~~~-------~~~~~~s~~~~~~~~~l~~~~~-~ 665 (829)
..... ....++.. .++.+|+.. .+|.|+.+|..+ ++ .+|.... .........+..+++.+|+... .
T Consensus 112 ~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~--~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 112 TLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 188 (306)
T ss_dssp ECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred eCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCC--CcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence 33221 11222222 346778776 478999999875 42 2332110 0111111223566778888764 5
Q ss_pred CeEEEEc-CC-CCEEE-E-eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003327 666 GHVVALD-SS-GSIIW-R-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 666 g~i~~~d-~~-g~~~w-~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
+.|++++ .. |++.. + +... ....-+..+.+|.+|++.. ++.|..+|+. |++.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred CEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 6788888 42 43210 0 0000 0111233455788999875 5789999975 7763
No 328
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.95 E-value=0.00031 Score=73.39 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=113.9
Q ss_pred CCCeEEEEecC---CC--cEEEEECCCCcEEEEEEc-----CC--ceeeceEEeeCCcEEEEEEe------CCEEEEEEc
Q 003327 484 DSDIYLFVGSH---SH--KFICADAKRSSVLWEIKL-----EG--RIECSAAVLADFSQVVVGCY------KGKIYFLDY 545 (829)
Q Consensus 484 d~~~~l~igs~---~g--~l~~~d~~tg~~~w~~~~-----~~--~~~~~~~~~~~~~~v~vg~~------dg~l~~~d~ 545 (829)
+.++++|++.. ++ .|..++ +|++. .+.. .. .......+..+ +.+|+... ++.|+.||+
T Consensus 25 ~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 25 TPDGRLFLSLHQFYQPEMQVAELT--QDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp CTTSCEEEEECGGGCCSCSEEEEE--TTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCceEEEEEC--CCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEEC
Confidence 35677887742 23 688888 67654 1210 00 11123445444 57887654 378999999
Q ss_pred CCCcEEEEEecCCe------eeeeeeeecCCCEEEEec----cCCeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCE
Q 003327 546 LTGDIYWTFQTCGE------VKCQPVVDAPRQLIWCGS----HDHNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDV 614 (829)
Q Consensus 546 ~tG~~~w~~~~~~~------~~~~~~~~~~~~~i~~gs----~~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~ 614 (829)
++|+++.++..+.. .....+++.+++.+|+.. .++.|+.||..+|+.......+..... ...+..++..
T Consensus 101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~ 180 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180 (343)
T ss_dssp TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence 99998776665321 112334554567888875 467899999998875433321111100 0011111122
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC-eEEEEc-C---CCCEE----E-EeecC
Q 003327 615 LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-S---SGSII----W-RCRTG 684 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-~i~~~d-~---~g~~~----w-~~~~~ 684 (829)
++....+|.+. .|.. ....+++++++..+|++...+ .++.++ . ++... + .+...
T Consensus 181 ~~~~~~~g~~~-----------~~~~-----~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 181 VQIGQPDGTVI-----------RPHL-----GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp CBEECTTSCEE-----------CCCC-----CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred EEeccCCCcee-----------ceec-----ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 33333333221 1211 113456666777888876654 777776 2 22110 0 00000
Q ss_pred CceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003327 685 GPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
+..-...-+..+.++.+|++.. ++.|.+||+++|++.
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 0000111233455788998864 578999998678753
No 329
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=97.93 E-value=7.9e-06 Score=67.71 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHhcccC----cceeccCCCccccCCChHHHHHHHHHc------CCcchhhh--cCCCHHHHHHHHHh
Q 003327 285 TKASDLLQVIRKAFGHALM----VEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIY--NFPTPSKLEIALLE 352 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~----~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~--~~pt~~~la~~l~~ 352 (829)
.+.+++++.|+++|.++++ ..++.++++|+++|.|||.+++|...| .++...++ .++|+..++.++..
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~v~~ 97 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKL 97 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHHHHH
Confidence 3456788899999999875 467899999999999999999998765 36777777 78999999999876
Q ss_pred hc
Q 003327 353 KK 354 (829)
Q Consensus 353 ~~ 354 (829)
..
T Consensus 98 ~~ 99 (105)
T 2jq4_A 98 IL 99 (105)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 330
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=97.93 E-value=0.00014 Score=78.65 Aligned_cols=146 Identities=13% Similarity=0.037 Sum_probs=96.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC----------cEEEE------EEcCCceeeceEEeeCCcEEE----EEEeCCEEEE
Q 003327 483 KDSDIYLFVGSHSHKFICADAKRS----------SVLWE------IKLEGRIECSAAVLADFSQVV----VGCYKGKIYF 542 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg----------~~~w~------~~~~~~~~~~~~~~~~~~~v~----vg~~dg~l~~ 542 (829)
....+.+++++.++ +..++..+- ..... ..... ...+..++.++..++ .|+.|+.|..
T Consensus 45 s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~lav~~~sgs~d~~v~i 122 (434)
T 2oit_A 45 SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF-PIHHLALSCDNLTLSACMMSSEYGSIIAF 122 (434)
T ss_dssp ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS-CEEEEEECTTSCEEEEEEEETTTEEEEEE
T ss_pred ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC-cccEEEEcCCCCEEEEEEeccCCCceEEE
Confidence 44577888888777 776653210 01111 11112 234667888888888 4666899999
Q ss_pred EEcCCC--------cEEEEEec---CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003327 543 LDYLTG--------DIYWTFQT---CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 543 ~d~~tG--------~~~w~~~~---~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
||..++ +.+..... +........+.+. +..+.+++.||.|+.||..++........+........+++
T Consensus 123 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp 202 (434)
T 2oit_A 123 FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP 202 (434)
T ss_dssp EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT
T ss_pred EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC
Confidence 998765 22222222 2333344456554 57788899999999999999876655443344455666777
Q ss_pred CCCEEEEEecCCeEEEEEcc
Q 003327 611 VHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~ 630 (829)
++..+++++.+|.|..||.+
T Consensus 203 dg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 203 KGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TSSCEEEEETTSCEEEECTT
T ss_pred CCCEEEEEcCCCcEEEEccC
Confidence 78899999999999999987
No 331
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=97.93 E-value=7.5e-06 Score=66.85 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+++++.+++++++.+++ +++.++.+|+ ++|.|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 19 t~~~i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 19 HMSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 95 (97)
T ss_dssp CCCCHHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 4467889999999999987 4799999997 9999999999998765 36777899999999999999765
No 332
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens}
Probab=97.92 E-value=8.2e-07 Score=91.92 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhh
Q 003327 317 GGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHA 390 (829)
Q Consensus 317 GgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (829)
|||||+|+||+++| ++++..+|++||+..|+.. ......+.+++|+|+..|....|.
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~~l-----------------~~~~~~~~~l~~~hg~~g~~~~~~ 63 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLMRL-----------------NSVQSSERPLFLVHPIEGSTTVFH 63 (316)
T ss_dssp -------------------------CCCCCTTSCSEEES-----------------CCCCCSSCCEEEECCTTCCSGGGH
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeEEc-----------------ccCCCCCCeEEEECCCCCCHHHHH
Confidence 89999999998876 3788999999998754311 001223457999999999999999
Q ss_pred hhhcccccCCccccCCcccccCCC-------------CC-ccCCCCCC-eeeecccccee
Q 003327 391 VVSKRLKVNSTKYFKPELHHHKDG-------------LP-WNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 391 ~l~~~l~~~~~~y~~~~~~~~~~~-------------~~-~~~~~~~~-~~s~~~~~~~~ 435 (829)
.+.+.|. .++|+++.+...... .. .+..||.+ |||+|+.++++
T Consensus 64 ~~~~~l~--~~v~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~l~G~S~Gg~va~~ 121 (316)
T 2px6_A 64 SLASRLS--IPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVAFE 121 (316)
T ss_dssp HHHHHCS--SCEEEECCCTTSCTTCHHHHHHHHHHHHTTTCSSCCCEEEEETHHHHHHHH
T ss_pred HHHHhcC--CCEEEEECCCCCCcCCHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHH
Confidence 9999986 777776654200000 00 01237888 99999998877
No 333
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0019 Score=69.50 Aligned_cols=190 Identities=10% Similarity=-0.039 Sum_probs=107.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEE-EEecCCe
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYW-TFQTCGE 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w-~~~~~~~ 559 (829)
++.||++...+.|+.+|+.+|++..... ........++..+++ ||+.... ..++.++...+.... .......
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~ 229 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARG 229 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSS
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCC
Confidence 5899998876889999998888653322 222223556777766 8888753 246667654332210 1111111
Q ss_pred eeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEee-ccCC-cccccceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003327 560 VKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKL-PCGG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~-~~~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
....++++.++.||++.. ++.|+.+|+.+|.....+ .... .....++++.+++.||++.. .+.|+.++.+..++.
T Consensus 230 -P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 230 -AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp -BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred -CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 122344544788998764 567999999988773332 2221 11123667776777888765 567889887632232
Q ss_pred EE----EeeccCCc----------ce---eeeeee--------ecCCEEEEEee-CCeEEEEcCCCCEE
Q 003327 636 TL----WLHELEVP----------AF---ASLCIT--------SANRHVICCLV-DGHVVALDSSGSII 678 (829)
Q Consensus 636 ~~----w~~~~~~~----------~~---~s~~~~--------~~~~~l~~~~~-~g~i~~~d~~g~~~ 678 (829)
.. +.-..... .+ ...++. ..++.+|++.. +..|..++.+|.+.
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT 377 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEE
Confidence 11 10000000 01 122331 45677888764 46788888777544
No 334
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=97.89 E-value=1.3e-05 Score=63.77 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++.+.+++++++.++. ..+.++++| .++|.|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 7 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 7 NDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 356788899999999987 578999999 89999999999998765 46777899999999999998765
No 335
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=97.89 E-value=1.6e-05 Score=63.63 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCcc------eeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMVE------EVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~------~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+.+.+++++++.++.+ .+.++.+|+++|.|||.+++|...|+ ++...++.++|+..|+.++.++.
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 4677889999999874 46788999999999999999998763 67778999999999999998653
No 336
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.88 E-value=2.4e-05 Score=85.49 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=39.4
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003327 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
|++||+++++. ...+.|+||.+++++++|++|.+.+||.++.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 99999999873 46899999999999999999999999999873
No 337
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.88 E-value=0.0073 Score=62.84 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=122.8
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++++.. +.|..+++...+..-....... .....+...++.||+.. ..+.|+.++..++........+-......
T Consensus 44 ~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~-~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 44 EPVLLFANR-IDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp CCEEEEECB-SCEEEECTTSCCEEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CceeEeecc-cceEEEeCCCCeeEEeecCCCc-eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence 345555544 4588898876554332222222 22345554556777664 46789999976655433222221122334
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEee-
Q 003327 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLH- 640 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~- 640 (829)
+++..++.||+.. ..+.|+.++...................+++++.++.+|+.... +.|+.++.+. ......
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---~~~~~~~ 198 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---SGRRIIA 198 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CSCEESC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---CCcEEEE
Confidence 5554567776654 45678888876433222221111222345677667888887653 6799998773 222111
Q ss_pred ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCCC
Q 003327 641 ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~t 717 (829)
..........++..+++.+|+... .+.|..+|.+|.....+-... ...|. +.. .++.+|+.. ..+.|..+|+.+
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence 111111234556656888888754 467888884443222211111 11111 112 356777664 467899998877
Q ss_pred CcEEEEE
Q 003327 718 GNLLWEY 724 (829)
Q Consensus 718 G~~~w~~ 724 (829)
|+..-.+
T Consensus 276 G~~~~~i 282 (349)
T 3v64_C 276 GKNQEII 282 (349)
T ss_dssp CCSCEEE
T ss_pred CCccEEe
Confidence 8765443
No 338
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0061 Score=61.26 Aligned_cols=147 Identities=8% Similarity=0.091 Sum_probs=94.1
Q ss_pred CCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCC-------c-eeeceEEe--eCCcEEEEEEe--------------CC
Q 003327 484 DSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEG-------R-IECSAAVL--ADFSQVVVGCY--------------KG 538 (829)
Q Consensus 484 d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~-------~-~~~~~~~~--~~~~~v~vg~~--------------dg 538 (829)
..++++|+++ ..+.|..+|+.++... ....++ . ..+...+. +..+.|++... +.
T Consensus 22 ~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~ 100 (334)
T 2p9w_A 22 RTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGAS 100 (334)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCC
T ss_pred CCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCC
Confidence 3568999999 5899999999866543 233322 1 11233341 22367776443 57
Q ss_pred EEEEEEcC---CCcEEEEEecCC-----------e-eeeeeeeecCCCEEEE-eccC-CeEEEEEcCCCe-EEEeeccCC
Q 003327 539 KIYFLDYL---TGDIYWTFQTCG-----------E-VKCQPVVDAPRQLIWC-GSHD-HNLYALDFRNYR-CVYKLPCGG 600 (829)
Q Consensus 539 ~l~~~d~~---tG~~~w~~~~~~-----------~-~~~~~~~~~~~~~i~~-gs~~-g~l~~~d~~tg~-~~w~~~~~~ 600 (829)
.|.++|+. ||+.+|...... . ....-+..+..|.+|+ ++.. +.|+.+++.... ..|......
T Consensus 101 ~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~ 180 (334)
T 2p9w_A 101 SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN 180 (334)
T ss_dssp EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCC
T ss_pred EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCC
Confidence 79999999 999999887531 1 1122333445677777 7777 889999976432 335433211
Q ss_pred ----cccccceeecCCCEEEEEecCCeEEEEEccC
Q 003327 601 ----SIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.-.+-+++.+++..|++....|.|+++|+.+
T Consensus 181 ~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 181 GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1134557777778888887789999999874
No 339
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.87 E-value=0.0046 Score=65.42 Aligned_cols=233 Identities=12% Similarity=-0.020 Sum_probs=123.4
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++++.. +.|..+|+.+++.......... .....+...++.||+.. ..+.|+.++..++...-....+.......
T Consensus 87 ~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~-~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 164 (386)
T 3v65_B 87 EPVLLFANR-IDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 164 (386)
T ss_dssp CCEEEEECB-SCEEEECTTSCCCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE
T ss_pred cceeEeecC-ccceeeccCCCcEEEEecCCCc-cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE
Confidence 445665554 4589999877665433322222 22445554556777664 46789999976655432222221112233
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEeec
Q 003327 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~~ 641 (829)
+++..++.||+.. ..+.|..++...................+++++.++.||+.... +.|+.++.+...-..+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-- 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-- 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--
Confidence 4554556676654 35678888765433222222111222345667667888887653 579999877411112211
Q ss_pred cCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCCCC
Q 003327 642 LEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
.........++..+++.+|+... .+.|..+|.+|.....+-... ...|. +.. .++.+|+.. .++.|..+|+.+|
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 11111234566656788887754 567888884443222221111 11111 112 345666654 5678999998788
Q ss_pred cEEEEEe
Q 003327 719 NLLWEYS 725 (829)
Q Consensus 719 ~~~w~~~ 725 (829)
+..-.+.
T Consensus 320 ~~~~~i~ 326 (386)
T 3v65_B 320 KNQEIIR 326 (386)
T ss_dssp CSCEEEE
T ss_pred cceEEEc
Confidence 7655443
No 340
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.84 E-value=5e-05 Score=82.98 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=40.2
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhCC
Q 003327 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~ 192 (829)
|++||++++.. ...+.|+||.++++.+.|+++...+||+++.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 99999999875 368999999999999999999999999999853
No 341
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.79 E-value=0.0079 Score=63.87 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=121.5
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCc----EEEEEecCCeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGD----IYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~----~~w~~~~~~~~~~ 562 (829)
.|++... +.|..+|+.+............ .....+...++.||+... .+.|+.+++.... ..-.....-....
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~-~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEecc-ceeEEEccCCcceeEeccccCc-ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3444443 5688899877665544332222 224455555567777653 5788888865421 1111111111122
Q ss_pred eeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe
Q 003327 563 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+.. ..+.|..++++.....-...........+++++.++.||+... .+.|+.++.+...-..+..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 334554456666653 4577888887654433222222222234567766788988764 3679999887311112211
Q ss_pred eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEE-eeCCeEEEEeCC
Q 003327 640 HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLIC-SRNGSIYSFEQE 716 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~-t~~g~l~~~d~~ 716 (829)
... ......++...++.+|++.. ...|..+|.+|.....+......+..|. +.. .++.||.. ...+.|+.+|+.
T Consensus 243 ~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESS
T ss_pred CCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcC
Confidence 111 12234556656788888754 5678888854543333321111111111 112 24455554 456789999988
Q ss_pred CCcEEEEEe
Q 003327 717 SGNLLWEYS 725 (829)
Q Consensus 717 tG~~~w~~~ 725 (829)
+|+.+-.+.
T Consensus 320 ~G~~~~~i~ 328 (400)
T 3p5b_L 320 TGSDVNLLA 328 (400)
T ss_dssp SCCCCEEEE
T ss_pred CCCceEEEe
Confidence 887665443
No 342
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.79 E-value=0.025 Score=59.45 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=126.9
Q ss_pred cEEEEECCC-----CcEEEEEEcCCc--------e-eeceE----Ee--eCCcEEEEEEe-CCEEEEEEcCCC----cEE
Q 003327 497 KFICADAKR-----SSVLWEIKLEGR--------I-ECSAA----VL--ADFSQVVVGCY-KGKIYFLDYLTG----DIY 551 (829)
Q Consensus 497 ~l~~~d~~t-----g~~~w~~~~~~~--------~-~~~~~----~~--~~~~~v~vg~~-dg~l~~~d~~tG----~~~ 551 (829)
.|..+|++. |+++.+..++.. . .|+.+ .+ .+..++|+.+. ++.||.+|.++- ++.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 577788776 888887776541 1 11211 23 55678888765 578999998755 444
Q ss_pred EEEe-------cCCeeeeeeeeecCCCEEEEec-cC------CeEEEEEcCCCeEEEeeccCCcc--cc-cceeecCCCE
Q 003327 552 WTFQ-------TCGEVKCQPVVDAPRQLIWCGS-HD------HNLYALDFRNYRCVYKLPCGGSI--FG-SPAIDEVHDV 614 (829)
Q Consensus 552 w~~~-------~~~~~~~~~~~~~~~~~i~~gs-~~------g~l~~~d~~tg~~~w~~~~~~~~--~~-~~~~~~~~~~ 614 (829)
...+ ++..-.....+.+ ++ ||+.. .+ +.|..+|.+|++++-+...+... +. ...+..+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence 4442 1111111112233 34 55532 22 68999999999998777644221 11 1234555666
Q ss_pred EEEEe-------------------cCCeEEEEEccCCCceEEEeeccCCcc----eeeeeeeecCCEEEEEee------C
Q 003327 615 LYVAS-------------------TSGRLTAISVKALPFHTLWLHELEVPA----FASLCITSANRHVICCLV------D 665 (829)
Q Consensus 615 l~v~t-------------------~~g~l~~~~~~~~~g~~~w~~~~~~~~----~~s~~~~~~~~~l~~~~~------~ 665 (829)
+++.. ....|..||.++ ++.+.++..+... .....+.+++..+|+++. +
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls 279 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS 279 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC
Confidence 66653 257899999987 7777777765221 111233667888998875 4
Q ss_pred CeEEEEc-CCCCEEEEe--ecCCc-----e----------eecC-cccc-cCCCeEEEEee-CCeEEEEeCC---CCcEE
Q 003327 666 GHVVALD-SSGSIIWRC--RTGGP-----I----------FAGP-CTSF-ALPSQVLICSR-NGSIYSFEQE---SGNLL 721 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~--~~~~~-----~----------~~~~-~~~~-~~~~~i~~~t~-~g~l~~~d~~---tG~~~ 721 (829)
+.|.++. .+|+..... ..... + -..+ .+.. ..+..||+++. .+.|..||.. +.+++
T Consensus 280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT 359 (462)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 5777776 445321111 01110 0 0111 1111 23457888875 5789999865 23455
Q ss_pred EEEecC
Q 003327 722 WEYSVG 727 (829)
Q Consensus 722 w~~~~~ 727 (829)
-+..++
T Consensus 360 ~~I~tG 365 (462)
T 2ece_A 360 GKVKLG 365 (462)
T ss_dssp EEEECB
T ss_pred EEEEeC
Confidence 455544
No 343
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.78 E-value=0.0033 Score=68.50 Aligned_cols=231 Identities=12% Similarity=0.101 Sum_probs=139.2
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcC--CceeeceEEe-eCCcEEEEEE------------------eCCEEEE
Q 003327 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLE--GRIECSAAVL-ADFSQVVVGC------------------YKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~-~~~~~v~vg~------------------~dg~l~~ 542 (829)
++.++|+... +++|..+|+.+.++.....++ .......... ++++++|+++ +++.+-+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4678999775 467999999999988755554 3333333334 7888999984 4567999
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC--------------------------------------eEEE
Q 003327 543 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH--------------------------------------NLYA 584 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g--------------------------------------~l~~ 584 (829)
+|.++.++.|+...++.. ....++.+++.+|+.+.+. .+..
T Consensus 180 ID~~t~~v~~qI~Vgg~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCCCc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 999999999999876532 2333455667777765432 3666
Q ss_pred EEcCC--CeE-EEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCce------------EEEeeccCCccee
Q 003327 585 LDFRN--YRC-VYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH------------TLWLHELEVPAFA 648 (829)
Q Consensus 585 ~d~~t--g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~------------~~w~~~~~~~~~~ 648 (829)
+|.++ ++. +..+..+... -...+++++..+|++.. +..+..+|.++ .+ .......+... .
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~P-hGv~~sPDGk~v~V~~~~s~~VsVid~~~--~~~~~~~~l~~~~~v~~~v~vG~gP-~ 334 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNP-HGCNMAPDKKHLCVAGKLSPTVTVLDVTR--FDAVFYENADPRSAVVAEPELGLGP-L 334 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSC-CCEEECTTSSEEEEECTTSSBEEEEEGGG--HHHHHHSCCCGGGGEEECCBCCSCE-E
T ss_pred EeCcccCCceeEEEEecCCCc-eEEEEcCCCCEEEEeCCCCCeEEEEECcc--cccccccccCcccceEEEcCCCCCc-c
Confidence 77666 443 3333332211 22345666788888764 56899999885 32 22333332221 2
Q ss_pred eeeeeecCCEEEEEe-eCCeEEEEc-CC----------CCEEEEeecCCc---eeecCcccccCC-CeEEEEeeC--CeE
Q 003327 649 SLCITSANRHVICCL-VDGHVVALD-SS----------GSIIWRCRTGGP---IFAGPCTSFALP-SQVLICSRN--GSI 710 (829)
Q Consensus 649 s~~~~~~~~~l~~~~-~~g~i~~~d-~~----------g~~~w~~~~~~~---~~~~~~~~~~~~-~~i~~~t~~--g~l 710 (829)
...+..++ ++|+.. .++.+..|| .+ .+.+-+...+.. ...+.......| ..+|+.+.- ..+
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 34455555 777765 478898999 55 445555555422 222222222334 456666431 123
Q ss_pred -----------EEEeCCCCcEE
Q 003327 711 -----------YSFEQESGNLL 721 (829)
Q Consensus 711 -----------~~~d~~tG~~~ 721 (829)
..+|.+++++.
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCE
T ss_pred ccCCCCCCCcceEEEcCCCcEE
Confidence 67888777643
No 344
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.77 E-value=0.0001 Score=80.21 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=57.6
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC------C--CCeeEEEEEEeecCCceEEEEEEE
Q 003327 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG------H--PDVVDTAVVSHKHQGELVILVAFI 216 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~------~--~~v~~~~v~~~~~~~~~~~~~~~v 216 (829)
|++||++++.. ...+.|+||.++++++.|+++.+.+||.++.+ . -.|.+-.+......... .-+.+.
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~w 485 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFW 485 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEE
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEE
Confidence 99999999864 25799999999999999999999999998874 1 24566555443222222 334444
Q ss_pred EecCCCCchHHHHHHHHHHHHhcC
Q 003327 217 VLKEKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~l 240 (829)
++... ..+...+++...|.+.|
T Consensus 486 E~~~~--~~~~~l~~~~~~Ld~~L 507 (581)
T 4epl_A 486 EISGE--TNEDVLQDCCNCLDRAF 507 (581)
T ss_dssp EESSC--CCHHHHHHHHHHHHHHC
T ss_pred eecCC--CCHHHHHHHHHHHHHHh
Confidence 65432 22233444444444444
No 345
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.74 E-value=0.0043 Score=62.32 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=96.8
Q ss_pred ceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCC-------e-eeeeeeee--cCCCEEEEecc-----------
Q 003327 521 SAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCG-------E-VKCQPVVD--APRQLIWCGSH----------- 578 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~-------~-~~~~~~~~--~~~~~i~~gs~----------- 578 (829)
++.+....+.+|+++ +.++|+.+|+.+|...-. ...+ . ..+...+. +..+.||+...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 456656567899998 689999999876654322 2322 1 12333442 33477877433
Q ss_pred ---CCeEEEEEcC---CCeEEEeeccCC-------------cccccceeecCCCEEEE-EecC-CeEEEEEccCCCceEE
Q 003327 579 ---DHNLYALDFR---NYRCVYKLPCGG-------------SIFGSPAIDEVHDVLYV-ASTS-GRLTAISVKALPFHTL 637 (829)
Q Consensus 579 ---~g~l~~~d~~---tg~~~w~~~~~~-------------~~~~~~~~~~~~~~l~v-~t~~-g~l~~~~~~~~~g~~~ 637 (829)
+..|.++|+. +|+.+|...+.. .....++++. ++.+|| ++.. +.|+.++++.. -...
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 4679999999 999999887531 1234455665 566777 7778 88999998842 1233
Q ss_pred EeeccCC----cceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 638 WLHELEV----PAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 638 w~~~~~~----~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|...... ..+..+++.+++..+++....+.|+++|
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 5433211 1134566777788888887788999999
No 346
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=97.74 E-value=2.4e-05 Score=62.00 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 293 VIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 293 ~l~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++..+++|++ +.|.++..|+++|.|||+|++|.++| .++...++. +|+..|+..+....
T Consensus 10 ~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~~v~~~~ 79 (91)
T 2cg5_B 10 DLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSKAD 79 (91)
T ss_dssp THHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHCC-
T ss_pred HHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHHHHhccc
Confidence 455566677775 46899999999999999999998876 367778877 69999999887654
No 347
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.72 E-value=0.0028 Score=69.12 Aligned_cols=186 Identities=8% Similarity=0.039 Sum_probs=115.5
Q ss_pred CCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC--Ceeeeeeeee-cCCCEEEEec------------------cCCeEEE
Q 003327 527 DFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVD-APRQLIWCGS------------------HDHNLYA 584 (829)
Q Consensus 527 ~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~-~~~~~i~~gs------------------~~g~l~~ 584 (829)
||.++|+... ++.|.++|+.+.++....+.+ .......... ++++++|+++ +++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 5668888765 457999999999988755543 3333333333 6788999983 3457999
Q ss_pred EEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC--------------------------------------eEEE
Q 003327 585 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG--------------------------------------RLTA 626 (829)
Q Consensus 585 ~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g--------------------------------------~l~~ 626 (829)
+|.++.+..|++..++. .....++.+++.+|+.+.+. .+.+
T Consensus 180 ID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999999988663 23344555678888877542 2444
Q ss_pred EEccCCCceE-EEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCC------------EEEEeecCCceeecC
Q 003327 627 ISVKALPFHT-LWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGS------------IIWRCRTGGPIFAGP 691 (829)
Q Consensus 627 ~~~~~~~g~~-~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~------------~~w~~~~~~~~~~~~ 691 (829)
+|..+..++. +.....+. ......++++++++++... +..+.++| .+.+ +..+...+......
T Consensus 259 ID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~- 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT- 336 (595)
T ss_dssp EECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE-
T ss_pred EeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE-
Confidence 5544311222 12222211 1134566778888888764 56789998 5432 33344443322222
Q ss_pred cccccCCCeEEEEe-eCCeEEEEeCCC
Q 003327 692 CTSFALPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 692 ~~~~~~~~~i~~~t-~~g~l~~~d~~t 717 (829)
.++.+|.+|+.. .++.|..||.++
T Consensus 337 --aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 337 --AFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --EECTTSEEEEEETTTTEEEEEEHHH
T ss_pred --EECCCCeEEEEEecCCcEEEEEhhH
Confidence 244466888775 478899999876
No 348
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.68 E-value=0.022 Score=58.28 Aligned_cols=224 Identities=9% Similarity=0.043 Sum_probs=114.1
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCC----CeEEEeeccCCccccc
Q 003327 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRN----YRCVYKLPCGGSIFGS 605 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~t----g~~~w~~~~~~~~~~~ 605 (829)
|++.. ...|..+|+.+++......... ....+.++..++.||+.. .++.|+.+++.+ ................
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~-~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLR-NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCS-SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCC-ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44444 3558999988776544333222 223455665567777764 457899999875 1211112111112234
Q ss_pred ceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEee
Q 003327 606 PAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCR 682 (829)
Q Consensus 606 ~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~ 682 (829)
++++..++.||+.. ..+.|..++++. .................++.+.++.+|+.... +.|+.++.+|+..-.+.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 45654467887764 467899998774 22211121111122445566568888887653 67888885565432221
Q ss_pred cCCceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccCCCcEEEEEc
Q 003327 683 TGGPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 683 ~~~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
.. . +..| .+..+ .++.||+.. ..+.|+.+|.+ |.....+ ...... ..|. .+. ...+..+|+..
T Consensus 160 ~~-~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~-~~P~---gia------v~~~~ly~~d~ 226 (316)
T 1ijq_A 160 TE-N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRL-AHPF---SLA------VFEDKVFWTDI 226 (316)
T ss_dssp CS-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTT-SSEE---EEE------EETTEEEEEET
T ss_pred EC-C-CCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCcc-CCcE---EEE------EECCEEEEEEC
Confidence 11 1 1111 12233 356788775 45689999976 4322222 111111 0010 000 01144455555
Q ss_pred cCCcEEEEEeecC
Q 003327 759 SSGSIHILRVNLD 771 (829)
Q Consensus 759 ~~G~l~~~d~~~~ 771 (829)
.++.|..++..++
T Consensus 227 ~~~~V~~~~~~~g 239 (316)
T 1ijq_A 227 INEAIFSANRLTG 239 (316)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCeEEEEeCCCC
Confidence 6778999987655
No 349
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.66 E-value=4.7e-05 Score=60.28 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccCcc----eeccCCCcc-ccCC-ChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMVE----EVLHHDNFF-TMGG-NSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~----~i~~~~~Ff-~lGg-dSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~~~ 354 (829)
+.+.+++++++.++.+ .+.++++|+ ++|+ |||.+++|...| .++...++. ++|+..++.++.++.
T Consensus 3 i~~~l~~il~~~l~~~~~~~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~~l~~~i~~~~ 81 (83)
T 2amw_A 3 HLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKL 81 (83)
T ss_dssp THHHHHHHHHHHTTCGGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHHHHHHHHHHHh
Confidence 4567888999988865 688999999 7999 999999998765 366677766 999999999998653
No 350
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.0065 Score=65.23 Aligned_cols=144 Identities=7% Similarity=-0.010 Sum_probs=87.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-----EEEEEEcCCCcEEE--EEecC
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-----KIYFLDYLTGDIYW--TFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-----~l~~~d~~tG~~~w--~~~~~ 557 (829)
.++.||+....+.|+.+|+.++++.-... ........++..+++.||+..+.+ .++.++. +|.... .+...
T Consensus 148 ~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~ 225 (430)
T 3tc9_A 148 NHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG 225 (430)
T ss_dssp EEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC
T ss_pred CCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC
Confidence 46889998876889999998776543222 222233566777777899987632 4666774 443321 11111
Q ss_pred CeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003327 558 GEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
.. ....++++.++.||+.. .++.|+.+|+.++.......... .....++++++++.+|+.. .++.|+.++.+.
T Consensus 226 ~~-p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QN-CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SS-CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 11 12234555467788765 45789999998876532222222 2223466777677788775 467888888764
No 351
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.63 E-value=0.012 Score=57.54 Aligned_cols=197 Identities=10% Similarity=0.045 Sum_probs=112.3
Q ss_pred eceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEE--
Q 003327 520 CSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVY-- 594 (829)
Q Consensus 520 ~~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w-- 594 (829)
+..++.++++.+|+ ...++.|+.+|+. |+++.++...+.. .....+. .++.+++.+ .++.++.++......+|
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~~~ 107 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVKIL 107 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeeeee
Confidence 34556666678886 5557789999976 9998887664321 1122233 445666654 45678888765443233
Q ss_pred -eeccC------CcccccceeecCCCEEEEEecCC--eEEEEEc--cCCCceEEEe----eccCCcceeeeeeeecCCEE
Q 003327 595 -KLPCG------GSIFGSPAIDEVHDVLYVASTSG--RLTAISV--KALPFHTLWL----HELEVPAFASLCITSANRHV 659 (829)
Q Consensus 595 -~~~~~------~~~~~~~~~~~~~~~l~v~t~~g--~l~~~~~--~~~~g~~~w~----~~~~~~~~~s~~~~~~~~~l 659 (829)
..... ..-+-..++++.++++|++.... .|+.++- .+..-..... ........++..+.+..+.+
T Consensus 108 ~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l 187 (255)
T 3qqz_A 108 KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL 187 (255)
T ss_dssp EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence 22111 11223456777778999987643 4666651 1100111111 01111223566777778888
Q ss_pred EEEeeC-CeEEEEcCCCCEEEEeecCCce------eecC-cccccCCCeEEEEeeCCeEEEEeCCCC
Q 003327 660 ICCLVD-GHVVALDSSGSIIWRCRTGGPI------FAGP-CTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 660 ~~~~~~-g~i~~~d~~g~~~w~~~~~~~~------~~~~-~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
|+-+.. ..|..+|.+|+++-........ +..| -+..+.+|++|+.+.-+.+|.|.+..+
T Consensus 188 liLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~~~ 254 (255)
T 3qqz_A 188 LVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSS 254 (255)
T ss_dssp EEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC---
T ss_pred EEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEecCC
Confidence 887764 5677788778877665544211 1111 234566788999998888888876543
No 352
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=97.62 E-value=7.2e-05 Score=61.10 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..++...+++++++.+++ ..+.++.+|.++|.|||.+++|...| .++...+...+|+..|+.++....
T Consensus 15 ~~~i~~~l~~ila~~l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~ 90 (100)
T 1vku_A 15 RKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHh
Confidence 456788899999998886 56889999999999999999998765 467778999999999999998754
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=97.61 E-value=0.0036 Score=66.63 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=100.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEee-CCcEEEEEEeCC----EEEEEEcCCCcEEEEEe
Q 003327 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLA-DFSQVVVGCYKG----KIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~-~~~~v~vg~~dg----~l~~~d~~tG~~~w~~~ 555 (829)
|..+.||+|+..| ++.++...+...|+.. .......+.++.+ +.+.+|+++..+ .|+..+ ++-..|+..
T Consensus 20 d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G~tW~~~ 96 (394)
T 3b7f_A 20 SGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGGGNWTEA 96 (394)
T ss_dssp CSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STTSCCEEC
T ss_pred CCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCCCCceEC
Confidence 4578999999887 7777765433457642 2333333444443 357899999877 788764 343456532
Q ss_pred cC-----Ce----------eeeeeeeec-C-CCEEEEeccCCeEEEEEcCCCeEEEeeccC-------------------
Q 003327 556 TC-----GE----------VKCQPVVDA-P-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------- 599 (829)
Q Consensus 556 ~~-----~~----------~~~~~~~~~-~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------- 599 (829)
.. .. ......+++ + .+.+|+++..+.|+..+ ..| ..|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG-~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHG-ASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STT-SBCEECHHHHTCTTHHHHHCCC----C
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCC-CCeEECcCccCCccccccccccccCCC
Confidence 21 00 111222332 2 68899998888888765 223 33543210
Q ss_pred -Ccccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--------------cceeeeeeeec-CCEEEEE
Q 003327 600 -GSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--------------PAFASLCITSA-NRHVICC 662 (829)
Q Consensus 600 -~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--------------~~~~s~~~~~~-~~~l~~~ 662 (829)
...+..+.+++ +.+.+|+++..+.|+..+ + +...|+..... .......+.+. .+.+|++
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~--D--gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMSSGGVFEST--D--AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEETBEEEEES--S--TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCceeEEEECCCCCCEEEEEECCCCEEEEC--C--CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 01122344443 347899998777776643 2 33456543211 01223333332 4789998
Q ss_pred eeCCeEEEEcCCCCEEEEe
Q 003327 663 LVDGHVVALDSSGSIIWRC 681 (829)
Q Consensus 663 ~~~g~i~~~d~~g~~~w~~ 681 (829)
+. ++|+..+..|+ .|+.
T Consensus 251 ~~-~gl~~s~D~G~-tW~~ 267 (394)
T 3b7f_A 251 NH-CGIYRMDRREG-VWKR 267 (394)
T ss_dssp ET-TEEEEEETTTT-EEEC
T ss_pred cC-CeEEEeCCCCC-cceE
Confidence 74 56766654343 4654
No 354
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.60 E-value=0.0043 Score=71.57 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=122.4
Q ss_pred ceEEeeCCcEEEEEEe-C----CEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccCC-------------e
Q 003327 521 SAAVLADFSQVVVGCY-K----GKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHDH-------------N 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-d----g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~g-------------~ 581 (829)
...+++|+..+..+.. . ..|+.+|+++|+.+-. ... .+ ...+.+. ++..|++.+.+. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK-DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE-EEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC-CceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 4567777776654432 2 3699999999997543 111 22 2456677 677777776653 3
Q ss_pred EEEEEcCCCe----EEEeecc-CCcccccceeecCCCEEEEEec----CCeEEEEEccCCCceEEEeeccCCcceeeeee
Q 003327 582 LYALDFRNYR----CVYKLPC-GGSIFGSPAIDEVHDVLYVAST----SGRLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 582 l~~~d~~tg~----~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~----~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
|+.++..++. +++.... ......++..++++..|++... .+.++.+|+++..+... .+.........+ +
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~~~~~~~-~ 287 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDLDADVSL-V 287 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSSSSCEEE-E
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCCCceEEE-E
Confidence 8888887653 3443322 1222345666777777766543 24789999876222221 222222211222 4
Q ss_pred eecCCEEEEEee----CCeEEEEc-CCCCE-EEEeecC--CceeecCcccccCCCeEEEEee-CC--eEEEEeCCCCcEE
Q 003327 653 TSANRHVICCLV----DGHVVALD-SSGSI-IWRCRTG--GPIFAGPCTSFALPSQVLICSR-NG--SIYSFEQESGNLL 721 (829)
Q Consensus 653 ~~~~~~l~~~~~----~g~i~~~d-~~g~~-~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~-~g--~l~~~d~~tG~~~ 721 (829)
..+++.+++.+. ++.|+.++ .++.. .|+.-.. .... .+... ++.|++... +| .|+.++.+++ ..
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~-~~ 362 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSG-SGYLFAEYMVDATARVEQFDYEGK-RV 362 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEE-TTEEEEEEEETTEEEEEEECTTSC-EE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEE-CCEEEEEEEECCeeEEEEEECCCC-ee
Confidence 556777777664 35788898 65543 2432111 1111 11122 345555544 44 6888887744 33
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccC----CcEEEEEeecC
Q 003327 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS----GSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G~l~~~d~~~~ 771 (829)
.....+.......+ +...++..+++...+ +.|+.+|..++
T Consensus 363 ~~l~~p~~~~~~~~----------~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 363 REVALPGLGSVSGF----------NGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECCSSSSEEEEC----------CCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEeecCCCceEEee----------ecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 33333321111000 011225556655444 78999987655
No 355
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.60 E-value=0.021 Score=65.81 Aligned_cols=232 Identities=12% Similarity=0.031 Sum_probs=119.7
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCc----EEEEEecCCeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGD----IYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~----~~w~~~~~~~~~~ 562 (829)
.|++... ..|..+++..++.......... .....+....+.||+... .+.|+.+++.... ..-.+...-....
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~-~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEECSCSS-EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeecCCCc-eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4454443 4588888776554433222222 223445444567776654 4678888865321 1111111111122
Q ss_pred eeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEe
Q 003327 563 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+.. ..+.|+.+++......-...........++++...+.||++... +.|..++++. ...-.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG---~~~~~ 551 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYS 551 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CCEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC---CceEE
Confidence 344554456677654 45788888876443222222122223445677767889987643 5788888874 32211
Q ss_pred -eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCC
Q 003327 640 -HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 640 -~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
..........+++...+++||+... ...|..++.+|.....+......+..|.-....++.||+.. ..+.|+.+|..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence 1111111234555556788888754 45788888555544333221111111211112355777764 56789999988
Q ss_pred CCcEEEEE
Q 003327 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 632 tG~~~~~l 639 (791)
T 3m0c_C 632 TGSDVNLL 639 (791)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEe
Confidence 88765443
No 356
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.59 E-value=0.018 Score=60.77 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=115.2
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
..+++.. ...|+.+++.+++.......... .....++..++.||+.. ..+.|+.+++..+...-....+......++
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~-~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEecCCCc-cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 3455554 45699999876665443332222 23445555567777654 457899999876654332222222223456
Q ss_pred eecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecC
Q 003327 608 IDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+... .+.|.+++++...-..+..... ......++.+.++.+|+.... +.|+.++.+|.....+...
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC--CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 6655677877654 5678888776411112211111 112345566567888887643 5788888555433222111
Q ss_pred CceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 685 GPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+ +..| -+..+ .++.||+.. ..+.|+.+|.+...................++ .+..+|+...++
T Consensus 244 ~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~------------~~~ly~td~~~~ 309 (386)
T 3v65_B 244 H--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF------------EDSLYWTDWHTK 309 (386)
T ss_dssp S--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE------------TTEEEEEETTTT
T ss_pred C--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE------------CCEEEEeeCCCC
Confidence 1 1111 12222 356777764 45678888865322211111110000001111 144555555677
Q ss_pred cEEEEEeecC
Q 003327 762 SIHILRVNLD 771 (829)
Q Consensus 762 ~l~~~d~~~~ 771 (829)
.|..++..++
T Consensus 310 ~V~~~~~~~G 319 (386)
T 3v65_B 310 SINSANKFTG 319 (386)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 8988885544
No 357
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=97.52 E-value=8.9e-05 Score=60.68 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003327 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++.+.+++++++.+++ +++.++.+| .++|.|||.+++|...| .++...+...+|+..|+.++.++
T Consensus 25 mei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 25 MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSL 99 (101)
T ss_dssp TTHHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHc
Confidence 35778899999999987 468999999 89999999999998765 36777899999999999998754
No 358
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=96.67 E-value=1.3e-05 Score=66.05 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.+++++++.+++ ++|.++++|.++|.|||.+++|...|+ ++...++.++|+..|+.++.+..
T Consensus 27 i~~~l~~ila~~l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~ 99 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHR 99 (103)
Confidence 778889999999887 578999999999999999999988763 67778999999999999987654
No 359
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=97.48 E-value=0.0022 Score=68.82 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=93.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcC----------Cc-e---------eeceEEe---eCC--cEEEEEEe---
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLE----------GR-I---------ECSAAVL---ADF--SQVVVGCY--- 536 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~----------~~-~---------~~~~~~~---~~~--~~v~vg~~--- 536 (829)
....||+|+.||.|++||.. |+++|.|-.. .. . ..++.+. .++ ..+.+++.
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 45789999999999999987 9999976211 00 0 0112221 122 24555553
Q ss_pred CCEEEEEEcCC---CcEEEEEecCC-----eeeeeeeeec---CCCEEEEecc------CCeEEEEEcCCCeEEEeeccC
Q 003327 537 KGKIYFLDYLT---GDIYWTFQTCG-----EVKCQPVVDA---PRQLIWCGSH------DHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 537 dg~l~~~d~~t---G~~~w~~~~~~-----~~~~~~~~~~---~~~~i~~gs~------~g~l~~~d~~tg~~~w~~~~~ 599 (829)
...+|++|..+ .+++|++...+ ...+.|.+.. .+-.+++|+. ...||++|+++|+++|++...
T Consensus 163 G~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~ 242 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVT 242 (570)
T ss_dssp CSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEEC
T ss_pred CcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecC
Confidence 24799999765 78999997322 2344454432 2234555542 347999999999999998764
Q ss_pred Cc-----cccccee-ecC----CCEEEEEecCCeEEEEEccC
Q 003327 600 GS-----IFGSPAI-DEV----HDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 600 ~~-----~~~~~~~-~~~----~~~l~v~t~~g~l~~~~~~~ 631 (829)
+. ..+.+.+ +.+ -+.+|++...|.|+++|+..
T Consensus 243 ~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~ 284 (570)
T 3hx6_A 243 GRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIA 284 (570)
T ss_dssp CSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSC
T ss_pred CCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCC
Confidence 31 2233433 222 25799999999999999876
No 360
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.48 E-value=0.046 Score=56.67 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=97.1
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
..++++. ...|+.+++.+............ .....++..++.||+.. ..+.|+.+++..+........+......++
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~-~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 122 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred ceeEeec-ccceEEEeCCCCeeEEeecCCCc-eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence 3455554 45588888765544332222222 23344555567777664 457899999876543322222212223455
Q ss_pred eecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecC
Q 003327 608 IDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+... .+.|.+++++...-..+....... ....++.+.++.+|+.... +.|+.++.+|.....+-..
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~--P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEK--PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCC--cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 6655678877654 567888887742111221111111 2345566567888877643 6788888555433222111
Q ss_pred CceeecCccccc-CCCeEEEEe-eCCeEEEEeCCC
Q 003327 685 GPIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 685 ~~~~~~~~~~~~-~~~~i~~~t-~~g~l~~~d~~t 717 (829)
.+.....+..+ .++.||+.. ..+.|+.+|.+.
T Consensus 201 -~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 201 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 11111112233 367788774 456788888653
No 361
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.42 E-value=0.074 Score=53.94 Aligned_cols=207 Identities=12% Similarity=0.108 Sum_probs=100.4
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC----CEEEEEEcCCCcEEEEEec--CCeee-eeeee
Q 003327 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK----GKIYFLDYLTGDIYWTFQT--CGEVK-CQPVV 566 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~d~~tG~~~w~~~~--~~~~~-~~~~~ 566 (829)
..+++||+.+++ |+.-. +..-....++..++..+++|..+ ..+++||+.+++ |+... +.... ...+.
T Consensus 24 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~ 99 (306)
T 3ii7_A 24 QSCRYFNPKDYS--WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS--WYSKLGPPTPRDSLAACA 99 (306)
T ss_dssp TSEEEEETTTTE--EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE--EEEEECCSSCCBSCEEEE
T ss_pred ceEEEecCCCCC--EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe--EEECCCCCccccceeEEE
Confidence 469999998876 76422 11111122233344444455543 579999988774 54322 11111 11222
Q ss_pred ecCCCEEE-EeccC------CeEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEEec----------CCeEEE
Q 003327 567 DAPRQLIW-CGSHD------HNLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVAST----------SGRLTA 626 (829)
Q Consensus 567 ~~~~~~i~-~gs~~------g~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~t~----------~g~l~~ 626 (829)
. ++.|| +|+.+ ..+++||+.+++ |+.... .... .+.+.. ++.||+... ...++.
T Consensus 100 ~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ 173 (306)
T 3ii7_A 100 A--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEV 173 (306)
T ss_dssp E--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEE
T ss_pred E--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEE
Confidence 2 24455 45443 458999998875 654321 1111 122233 367776432 345889
Q ss_pred EEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEE-ee-----CCeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003327 627 ISVKALPFHTLWLHELEV--PAFASLCITSANRHVICC-LV-----DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~-~~-----~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
||+.+ . .|..-... +........ .++.+|+. .. ...+.+|| .++ .|+.-...+.-.........
T Consensus 174 yd~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 174 YDPAT--E--TWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp EETTT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE
T ss_pred eCCCC--C--eEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE
Confidence 99887 3 46543222 221122222 24555543 32 24578888 554 36543221110000011112
Q ss_pred CCeEEE-EeeC-----CeEEEEeCCCCc
Q 003327 698 PSQVLI-CSRN-----GSIYSFEQESGN 719 (829)
Q Consensus 698 ~~~i~~-~t~~-----g~l~~~d~~tG~ 719 (829)
++.||+ |..+ ..+++||+++.+
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 455654 4322 468888887764
No 362
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.42 E-value=0.061 Score=54.87 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=117.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcE-EEEEecCCeeeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDI-YWTFQTCGEVKCQP 564 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~-~w~~~~~~~~~~~~ 564 (829)
.|+++. .+.|..+|+.+..........+ .......+...++.||... ..+.|+.++..++.. .+....+-......
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344444 3568889987653111111111 1111333444445666554 456788888766532 12222111112233
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEee-
Q 003327 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLH- 640 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~- 640 (829)
+++..++.||+.. ..+.|..++...................++++..++.+|++.. .+.|+.++.+ |+.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---G~~~~~~~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD---GSSRFIII 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT---SCSCEEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC---CCCeEEEE
Confidence 4554456676653 4567888886643222222112122234556666688888774 4789999877 3322111
Q ss_pred ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEE-eeCCeEEEEeCCC
Q 003327 641 ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~-t~~g~l~~~d~~t 717 (829)
...-......++..+++.+|+... .+.|..+|.+|...-.+-... ...|. +..+ ++.+|.. ...+.|..+++.+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 111111234566666788888754 567888884443221111100 11111 1123 3455554 4567899999988
Q ss_pred CcEEEEEe
Q 003327 718 GNLLWEYS 725 (829)
Q Consensus 718 G~~~w~~~ 725 (829)
|+..-.+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 87654443
No 363
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=97.41 E-value=0.00015 Score=72.97 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc-----CCcchhhhcCCCHHHHHHHHH
Q 003327 292 QVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALL 351 (829)
Q Consensus 292 ~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l-----~~~~~~~~~~pt~~~la~~l~ 351 (829)
+++++.|++.| . +.+..+++|+++|+||+.+|+|+.++ ++++..+|++||+..++.+|.
T Consensus 218 dwlr~~va~~L-~~~~~i~~~~nL~~lGlDSi~~m~l~~~~~~~g~~~~~~~l~~~ptl~~~~~~l~ 283 (287)
T 2fq1_A 218 AALREVILPLL-DESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLS 283 (287)
T ss_dssp HHHHHHHGGGC-CCSSCCCTTSCSGGGTCCTTHHHHHHHHHTTTCTTCCHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHhhcCCCCCHHHhCccHHHHHHHHHHHHHcCCCCCHHHHHhCccHHHHHHHHH
Confidence 56777888888 5 46899999999999999999999876 478889999999999999987
No 364
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=97.41 E-value=0.00024 Score=55.55 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHhcccCcc--eeccCCCccccC-CChHHHHHHHHHcC------Ccchhhh--cCCCHHHHHHHHHhh
Q 003327 288 SDLLQVIRKAFGHALMVE--EVLHHDNFFTMG-GNSIAAAHVAHNLG------IDMRLIY--NFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~--~i~~~~~Ff~lG-gdSl~a~~l~~~l~------~~~~~~~--~~pt~~~la~~l~~~ 353 (829)
.++.+.+++++++.++.+ .+.++++|+++| .|||.+++|...|+ ++...+. .++|+..++.++.++
T Consensus 3 ~~i~~~i~~il~~~~~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~ 79 (80)
T 1dv5_A 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHc
Confidence 356778888888888764 568899999999 99999999998763 5666666 899999999998764
No 365
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=97.37 E-value=0.007 Score=64.98 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=92.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCC----------eee----------eeeeeec---C--CCEEEEecc---C
Q 003327 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG----------EVK----------CQPVVDA---P--RQLIWCGSH---D 579 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~----------~~~----------~~~~~~~---~--~~~i~~gs~---~ 579 (829)
...||+|+.||.|++||.. |+++|.|-... ... ..|.+.+ + -..+++++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3589999999999999977 99999763210 000 1122211 1 123444432 2
Q ss_pred CeEEEEEcCC---CeEEEeeccC-----Ccccccceeec--CCC-EEEEEec------CCeEEEEEccCCCceEEEeecc
Q 003327 580 HNLYALDFRN---YRCVYKLPCG-----GSIFGSPAIDE--VHD-VLYVAST------SGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 580 g~l~~~d~~t---g~~~w~~~~~-----~~~~~~~~~~~--~~~-~l~v~t~------~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+|++|+.+ .+++|++... +..++.|.+.. ++. .+++++. ...||++|+++ |+.+|++..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~t--G~li~~i~~ 241 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMET--GAITRKLEV 241 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTT--CCEEEEEEE
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCC--CceEEEEec
Confidence 4699999765 7899998742 34566676543 223 3444442 34799999998 999998865
Q ss_pred CC-----cceeeeeeeec-----CCEEEEEeeCCeEEEEc-CCC
Q 003327 643 EV-----PAFASLCITSA-----NRHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 643 ~~-----~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d-~~g 675 (829)
.. ...+++.+... -+.+|+|...|.|+.+| .+.
T Consensus 242 ~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 242 TGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp CCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 42 22344444422 25899999999999999 543
No 366
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.36 E-value=0.05 Score=55.50 Aligned_cols=176 Identities=11% Similarity=0.139 Sum_probs=87.3
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEE-cCC--ceeeceEEeeCCcEEEEEEe----C-------CEEEEEEcCCCcEEEEE
Q 003327 489 LFVGSHSHKFICADAKRSSVLWEIK-LEG--RIECSAAVLADFSQVVVGCY----K-------GKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~-~~~--~~~~~~~~~~~~~~v~vg~~----d-------g~l~~~d~~tG~~~w~~ 554 (829)
+++|. ..+.+||+.+++ |... .+. .-....++..++..+++|.. + ..+++||+.+++ |+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEE
T ss_pred EEEcC--CceEEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEE
Confidence 44455 459999999887 7642 211 11112233334455556653 1 238899988764 653
Q ss_pred ec--CCeee-eeeeeecCCCEEEE-eccC--------CeEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEEe
Q 003327 555 QT--CGEVK-CQPVVDAPRQLIWC-GSHD--------HNLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVAS 619 (829)
Q Consensus 555 ~~--~~~~~-~~~~~~~~~~~i~~-gs~~--------g~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~t 619 (829)
-. +.... .+.+.. ++.||+ |+.+ ..+++||+.+++ |+.... .... .+.+.. ++.||+..
T Consensus 82 ~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~G 155 (315)
T 4asc_A 82 MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLSH--MDLVYVIG 155 (315)
T ss_dssp CCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEEE--CCEEEEEe
Confidence 21 11111 112222 345554 4421 358999998875 764322 1111 122233 36666643
Q ss_pred -c------CCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCC-----eEEEEc-CCCCEEEEee
Q 003327 620 -T------SGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDG-----HVVALD-SSGSIIWRCR 682 (829)
Q Consensus 620 -~------~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g-----~i~~~d-~~g~~~w~~~ 682 (829)
. ...++.||+.+ . .|+.-... +.....+...++..+++|..++ .+.+|| .+. .|+.-
T Consensus 156 G~~~~~~~~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKK--F--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp CBCTTSCBCCCEEEEETTT--T--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEE
T ss_pred CCCCCCcccceEEEEeCCC--C--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC--eEEEC
Confidence 2 14589999886 3 46653322 2222222233444444454432 477888 554 46643
No 367
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.34 E-value=0.045 Score=55.41 Aligned_cols=209 Identities=13% Similarity=0.119 Sum_probs=99.9
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCc-EEEEEecC--Cee-eeee
Q 003327 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGD-IYWTFQTC--GEV-KCQP 564 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~-~~w~~~~~--~~~-~~~~ 564 (829)
..+++||+.+++ |..-. +.......++..++..+++|..+ ..+++||..+++ ..|+.... ... ....
T Consensus 31 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQE--WSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCe--EEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368999998775 76422 21111122333444444455543 469999988876 34654321 111 1112
Q ss_pred eeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeec--cCCccc-ccceeecCCCEEEEEe-c-----CCeEEEEEc
Q 003327 565 VVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLP--CGGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTAISV 629 (829)
Q Consensus 565 ~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~~~~ 629 (829)
+.. ++.||+ |+.+ ..+++||+.+++ |+.. ...... .+.+.. ++.||+.+ . ...++.||+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeC
Confidence 222 245554 4432 368999998875 5432 121111 122233 36666643 2 245889998
Q ss_pred cCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee-----CCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCe
Q 003327 630 KALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV-----DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 700 (829)
Q Consensus 630 ~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~-----~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (829)
.+ . .|+.-.. .+........ .++.+|+ |.. ...+++|| .+. .|+.-...+.-.........++.
T Consensus 183 ~~--~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 183 HT--G--HWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTPRCYVGATVLRGR 255 (301)
T ss_dssp TT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTE
T ss_pred CC--C--cEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCcccceeEEEECCE
Confidence 86 3 4654322 2221122222 2445554 433 24588888 554 35543211110000011122456
Q ss_pred EEEEe-eC-----CeEEEEeCCCCc
Q 003327 701 VLICS-RN-----GSIYSFEQESGN 719 (829)
Q Consensus 701 i~~~t-~~-----g~l~~~d~~tG~ 719 (829)
||+.. .+ ..+++||+++.+
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEcCcCCCcccccEEEEcCCCCe
Confidence 66543 22 357788877654
No 368
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.33 E-value=0.022 Score=59.13 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=52.2
Q ss_pred cceEEeeCCCeEEEEecC------CCcEEEEECCCCcEEEEEEcCCc------eeeceEEeeCCcEEEEEEe----CCEE
Q 003327 477 SPLVVLKDSDIYLFVGSH------SHKFICADAKRSSVLWEIKLEGR------IECSAAVLADFSQVVVGCY----KGKI 540 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~------~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~~~~~~v~vg~~----dg~l 540 (829)
+|.-+.-|.+++||+... ++.|+.||+.+|+++..+.++.. .....++..+++.+|+... ++.|
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i 147 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL 147 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence 444333456688998764 36899999999997766665421 1234456555678888764 6799
Q ss_pred EEEEcCCCcEEE
Q 003327 541 YFLDYLTGDIYW 552 (829)
Q Consensus 541 ~~~d~~tG~~~w 552 (829)
+.||..+|+...
T Consensus 148 ~v~d~~~g~~~r 159 (343)
T 2qe8_A 148 IRVDLQTGLAAR 159 (343)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 999998887643
No 369
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=97.33 E-value=0.00021 Score=57.23 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHhccc---Cc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 288 SDLLQVIRKAFGHAL---MV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l---~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+.+++++++.+ ++ +++.++.+| -++|.|||.+++|...| .++...+..++|+..|+.++.++.
T Consensus 7 ~~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 85 (88)
T 2l4b_A 7 EEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASKS 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHhh
Confidence 467788888888888 54 568899999 59999999999998765 366778899999999999998754
No 370
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=97.29 E-value=0.00016 Score=59.53 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc----C--Ccchh------h-----hcCCCHHHHHH
Q 003327 289 DLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL----G--IDMRL------I-----YNFPTPSKLEI 348 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l----~--~~~~~------~-----~~~pt~~~la~ 348 (829)
++.+.+++++++.+++ .++.++.+|+ ++|.|||.+++|+..| + ++... + +.+||+..|+.
T Consensus 3 ~i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 4567788888888876 5688888885 9999999999998765 3 44444 4 55566999999
Q ss_pred HHHhhc
Q 003327 349 ALLEKK 354 (829)
Q Consensus 349 ~l~~~~ 354 (829)
++.+..
T Consensus 83 ~i~~~~ 88 (101)
T 2kw2_A 83 RIDELV 88 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 371
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.21 E-value=0.13 Score=54.36 Aligned_cols=227 Identities=9% Similarity=0.027 Sum_probs=112.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCe----EEEeeccCCcccc
Q 003327 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYR----CVYKLPCGGSIFG 604 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~----~~w~~~~~~~~~~ 604 (829)
.+++.. ...|..+|+.+............ .....++..++.||+.. ..+.|+.+++.... ..-..........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~-~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCc-ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344443 57788888776665544332222 23344555567777664 35678888876421 1111111111122
Q ss_pred cceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEe
Q 003327 605 SPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRC 681 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~ 681 (829)
.++++..++.||+.. ..+.|..++++. ....-............++.+.++.+|+... .+.|+.++.+|.....+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 345555457777664 356788888774 2221111111111234556666788888764 36788888555433222
Q ss_pred ecCCceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003327 682 RTGGPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 682 ~~~~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
-.. .+ ..| .+..+ .++.||+.. ..+.|..+|.+ |.....+.........|... . ...+..+|+..
T Consensus 241 ~~~-~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl---~------v~~~~lywtd~ 308 (400)
T 3p5b_L 241 VTE-NI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSL---A------VFEDKVFWTDI 308 (400)
T ss_dssp ECS-SC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTSSEEEE---E------EETTEEEEEES
T ss_pred EEC-CC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCCCCEEE---E------EeCCEEEEecC
Confidence 111 11 111 12223 356788774 45789999965 44333322111100111000 0 01155566666
Q ss_pred cCCcEEEEEeecCc
Q 003327 759 SSGSIHILRVNLDV 772 (829)
Q Consensus 759 ~~G~l~~~d~~~~~ 772 (829)
..+.|+.+|..+|.
T Consensus 309 ~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 309 INEAIFSANRLTGS 322 (400)
T ss_dssp SSCSEEEEESSSCC
T ss_pred CCCeEEEEEcCCCC
Confidence 67789999876653
No 372
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.069 Score=57.43 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=107.9
Q ss_pred CCeEEEEecCC-CcEEEEECCCCcEEEEEEcCC-ce--eeceEE-------eeCCcEEEEEEeCC-------EEEEEEcC
Q 003327 485 SDIYLFVGSHS-HKFICADAKRSSVLWEIKLEG-RI--ECSAAV-------LADFSQVVVGCYKG-------KIYFLDYL 546 (829)
Q Consensus 485 ~~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~-~~--~~~~~~-------~~~~~~v~vg~~dg-------~l~~~d~~ 546 (829)
.++.||+.... +.|..+|++++++.-...... .. ....++ ..+++.+|+..+.+ .++.++..
T Consensus 150 ~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 150 NKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 36789988764 679999999887764333322 11 234556 77777899988764 38888754
Q ss_pred C-CcEEE-----EEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcC-------CCeE-----------EEe-eccC-
Q 003327 547 T-GDIYW-----TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR-------NYRC-----------VYK-LPCG- 599 (829)
Q Consensus 547 t-G~~~w-----~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~-------tg~~-----------~w~-~~~~- 599 (829)
. |+..+ .+...... ...++++.++.||+... ++.|+.+|++ +|.. .-. +...
T Consensus 230 ~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~ 308 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308 (496)
T ss_dssp TTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred CCCceeecccceeeccCCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence 4 44321 11111111 12345555677887654 5679999988 6653 001 1222
Q ss_pred CcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceE----EEeeccCC----------cceeee---eeee-------
Q 003327 600 GSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHT----LWLHELEV----------PAFASL---CITS------- 654 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~----~w~~~~~~----------~~~~s~---~~~~------- 654 (829)
......++++++++.+|++. ..+.|+.++.+...+.. .+--.... ..+..+ ....
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 12223567777777788875 45788887765432321 11111000 011112 2222
Q ss_pred cCCEEEEEee-CCeEEEEcCCCCEE
Q 003327 655 ANRHVICCLV-DGHVVALDSSGSII 678 (829)
Q Consensus 655 ~~~~l~~~~~-~g~i~~~d~~g~~~ 678 (829)
.++.+|++.. +..|..++.+|.+.
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~~G~v~ 413 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTPEGIVS 413 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECTTCBEE
T ss_pred CCCeEEEEECCCCEEEEEeCCCCEE
Confidence 3567888754 56788888777554
No 373
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.19 E-value=0.041 Score=56.63 Aligned_cols=181 Identities=8% Similarity=0.048 Sum_probs=94.3
Q ss_pred eCCEEEEEEcCC--CcEE-EEEecC--C----eeeeeeeee--cCCCEEEEeccCC-----eEEEEEcCCCeEEEeeccC
Q 003327 536 YKGKIYFLDYLT--GDIY-WTFQTC--G----EVKCQPVVD--APRQLIWCGSHDH-----NLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 536 ~dg~l~~~d~~t--G~~~-w~~~~~--~----~~~~~~~~~--~~~~~i~~gs~~g-----~l~~~d~~tg~~~w~~~~~ 599 (829)
.+|.|+.+|.++ ++.. ...... + ......+.. ++..+||+..+.. .++.+|..++...+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 478899999763 4432 222210 0 112222222 2233577765432 3777887777665554443
Q ss_pred Cccc---ccceeecCCCEEEEEec------------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE
Q 003327 600 GSIF---GSPAIDEVHDVLYVAST------------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 600 ~~~~---~~~~~~~~~~~l~v~t~------------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
+... ....++. ++.+|+++. .|.|+.++... -+.+- ..-......+++++++.
T Consensus 161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~~~~---~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVA---EGFDFANGINISPDGKY 234 (355)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CEEEE---EEESSEEEEEECTTSSE
T ss_pred cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EEEee---cCCcccCcceECCCCCE
Confidence 3322 2334444 578888753 25677776532 12111 11111245677778888
Q ss_pred EEEEe-eCCeEEEEc--CCCCEEEE--eecCCceeecCcccccC-CCeEEEEee-C-CeEEEEeCC--CCcEEEEEe
Q 003327 659 VICCL-VDGHVVALD--SSGSIIWR--CRTGGPIFAGPCTSFAL-PSQVLICSR-N-GSIYSFEQE--SGNLLWEYS 725 (829)
Q Consensus 659 l~~~~-~~g~i~~~d--~~g~~~w~--~~~~~~~~~~~~~~~~~-~~~i~~~t~-~-g~l~~~d~~--tG~~~w~~~ 725 (829)
+|++. ..+.|++|+ .+|++.-. +..++.. .-+..+. +|.+|+++. + +.|.+++++ .+..+++..
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P---DGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV---DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE---EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC---ceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 98875 467899988 35654321 1111111 1123556 489999764 4 356666765 355666555
No 374
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.18 E-value=0.091 Score=53.53 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=109.9
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeE-EEeeccCCcccccce
Q 003327 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRC-VYKLPCGGSIFGSPA 607 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~ 607 (829)
++++. ...|..+|+.+..........+ .......++..++.||... ..+.|+.+++.++.. .+....+-.....++
T Consensus 7 ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 7 LLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 44443 4568888876653111111111 1112223444446666553 456788888766531 121111111222345
Q ss_pred eecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEeecC
Q 003327 608 IDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+.. ..+.|..++++...-+.+ ...........++.+.++.+|+... .+.|+.++.+|......-..
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 664567777764 356788888774111122 1111111234556656788888764 47888888555433222111
Q ss_pred CceeecCccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCCcEEEEEccCC
Q 003327 685 GPIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.+.....+..+ .++.||+.. ..+.|+++|.+ |...-.+-. .........++ .+..+|+-...+
T Consensus 164 -~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~P~glav~------------~~~lywtd~~~~ 229 (318)
T 3sov_A 164 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLF------------EDILYWTDWSTH 229 (318)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSCCSCEEEEEEE------------TTEEEEEETTTT
T ss_pred -CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCceEEEecCCCCCceEEEEe------------CCEEEEEecCCC
Confidence 11111112233 356788774 46788998875 332222111 00000001111 255666666678
Q ss_pred cEEEEEeecCc
Q 003327 762 SIHILRVNLDV 772 (829)
Q Consensus 762 ~l~~~d~~~~~ 772 (829)
.|+.++..++.
T Consensus 230 ~V~~~~~~~G~ 240 (318)
T 3sov_A 230 SILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 89999886653
No 375
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=97.17 E-value=0.035 Score=58.84 Aligned_cols=187 Identities=14% Similarity=0.208 Sum_probs=97.3
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEe---cCCeeeeeeeeec-CCCEEEEeccCC----eEEEEEcCCCeEEEeecc
Q 003327 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---TCGEVKCQPVVDA-PRQLIWCGSHDH----NLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~-~~~~i~~gs~~g----~l~~~d~~tg~~~w~~~~ 598 (829)
..+.||+|+..| ++.++..++...|+.. ..+......++++ +.+.+|+++..| .|+..+ ..| ..|+...
T Consensus 21 ~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G-~tW~~~~ 97 (394)
T 3b7f_A 21 GPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGG-GNWTEAT 97 (394)
T ss_dssp SCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STT-SCCEECS
T ss_pred CCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCC-CCceECC
Confidence 356899999654 8888765544467532 2233333334443 368899998776 677653 223 3454321
Q ss_pred CC-----c----------ccccceeec-C-CCEEEEEecCCeEEEEEccCCCceEEEeeccC------------------
Q 003327 599 GG-----S----------IFGSPAIDE-V-HDVLYVASTSGRLTAISVKALPFHTLWLHELE------------------ 643 (829)
Q Consensus 599 ~~-----~----------~~~~~~~~~-~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~------------------ 643 (829)
.. . .+...+++. + .+.+|+++..+.|+..+ + +...|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--D--gG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--D--HGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--S--TTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--C--CCCCeEECcCccCCccccccccccccCC
Confidence 10 0 111233442 2 58899998888787653 2 3334653211
Q ss_pred --Ccceeeeeeee-cCCEEEEEeeCCeEEEEcCCCCEEEEeecCCce---e---------ecCccccc--CCCeEEEEee
Q 003327 644 --VPAFASLCITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGGPI---F---------AGPCTSFA--LPSQVLICSR 706 (829)
Q Consensus 644 --~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~---~---------~~~~~~~~--~~~~i~~~t~ 706 (829)
...+..+.+.+ +.+.+|+++..++|+..+..|+ .|+....... + ....+... ..+.||+++.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~-tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGT-DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH 252 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTS-SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred CCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCC-CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence 01112333332 3578999988788877764443 4654321100 0 00111222 2378999875
Q ss_pred CCeEEEEeCCCCcEEEEE
Q 003327 707 NGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~ 724 (829)
. +|+..+ ..| ..|+.
T Consensus 253 ~-gl~~s~-D~G-~tW~~ 267 (394)
T 3b7f_A 253 C-GIYRMD-RRE-GVWKR 267 (394)
T ss_dssp T-EEEEEE-TTT-TEEEC
T ss_pred C-eEEEeC-CCC-CcceE
Confidence 4 577765 333 35653
No 376
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.16 E-value=0.029 Score=60.08 Aligned_cols=195 Identities=7% Similarity=0.031 Sum_probs=105.0
Q ss_pred eEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC-----eEEEEEcCCCeEEE
Q 003327 522 AAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH-----NLYALDFRNYRCVY 594 (829)
Q Consensus 522 ~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g-----~l~~~d~~tg~~~w 594 (829)
.++.. +++.||+....+.|+++|+++|++..... .........++.+++ ||+....+ .++.++...+....
T Consensus 144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~ 221 (433)
T 4hw6_A 144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTER 221 (433)
T ss_dssp EEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCE
T ss_pred EEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecc
Confidence 34444 25789998766889999988887754332 222233344555455 88776532 35666544331100
Q ss_pred eeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEee-ccC-CcceeeeeeeecCCEEEEEee-CCeEEE
Q 003327 595 KLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH-ELE-VPAFASLCITSANRHVICCLV-DGHVVA 670 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~-~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~ 670 (829)
............+++..++.||++.. ++.|+.+++++ |...... ... .+.....++.++++.+|+... +..|..
T Consensus 222 ~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~--g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 222 LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT--GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT--CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC--CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence 00001111233456655688998764 56799999886 6542222 111 111123566667777888764 467888
Q ss_pred Ec-C--CCCEE----EEeecCC----------ceeecCc-ccc---------cCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003327 671 LD-S--SGSII----WRCRTGG----------PIFAGPC-TSF---------ALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 671 ~d-~--~g~~~----w~~~~~~----------~~~~~~~-~~~---------~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
++ . ++.+. +.-..+. ..+..|. +.. +.++.||++.. ++.|..+++ +|.+.
T Consensus 300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 76 2 34321 1111010 0112222 223 56778998854 567899985 67554
No 377
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.16 E-value=0.032 Score=58.21 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=90.2
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc-----------EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003327 482 LKDSDIYLFVGSHSHKFICADAKRSS-----------VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~-----------~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
.....+.+++|+.++ +.++++++.+ ..+...++. + ....+ ++..++++ .++.|..||..+-..
T Consensus 45 is~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V-~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 45 ISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-V-IFVCF--HGDQVLVS-TRNALYSLDLEELSE 118 (388)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-E-EEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred EcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-e-eEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence 445678889988886 6668865443 235566666 3 45556 67899999 789999999876655
Q ss_pred EEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003327 551 YWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 551 ~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
.+...... .+.. .... ...+.+.+.||.|+.||.++++..-. .....+.++++++ ++++..+|.+..|++
T Consensus 119 ~~~~~~~~~~v~~-i~~~--~p~~av~~~dG~L~v~dl~~~~~~~~----~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 119 FRTVTSFEKPVFQ-LKNV--NNTLVILNSVNDLSALDLRTKSTKQL----AQNVTSFDVTNSQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp EEEEEECSSCEEE-EEEC--SSEEEEEETTSEEEEEETTTCCEEEE----EESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred cCccceeecceee-EEec--CCCEEEEECCCCEEEEEccCCccccc----cCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence 44433222 2221 1111 22477788999999999998876531 1234456666633 788999999999998
Q ss_pred cC
Q 003327 630 KA 631 (829)
Q Consensus 630 ~~ 631 (829)
+.
T Consensus 190 ~~ 191 (388)
T 1xip_A 190 RN 191 (388)
T ss_dssp ET
T ss_pred CC
Confidence 86
No 378
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.11 Score=52.54 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=101.7
Q ss_pred EEEecc--CCeEEEEEcCCCeEEEeeccC--Cc-ccccceeecCCCEEEEEe-c----CCeEEEEEccCCCceEEEeecc
Q 003327 573 IWCGSH--DHNLYALDFRNYRCVYKLPCG--GS-IFGSPAIDEVHDVLYVAS-T----SGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 573 i~~gs~--~g~l~~~d~~tg~~~w~~~~~--~~-~~~~~~~~~~~~~l~v~t-~----~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+++|+. ...+++||+.+++ |..-.. .. ...+.+.. ++.||+.. . ...++.||+.+ . .|..-.
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~--~--~W~~~~ 86 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVK--D--SWYSKL 86 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTT--T--EEEEEE
T ss_pred EEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCC--C--eEEECC
Confidence 334543 3569999999875 653221 11 11122233 36666543 2 25688999887 3 455432
Q ss_pred C--CcceeeeeeeecCCEEEE-EeeC------CeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEee-----
Q 003327 643 E--VPAFASLCITSANRHVIC-CLVD------GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICSR----- 706 (829)
Q Consensus 643 ~--~~~~~s~~~~~~~~~l~~-~~~~------g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t~----- 706 (829)
. .+........ .++.+|+ |..+ ..+.+|| .+. .|+.....+. ..... ....++.||+...
T Consensus 87 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 87 GPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHG-MVEANGLIYVCGGSLGNN 162 (306)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCE-EEEETTEEEEECCEESCT
T ss_pred CCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeE-EEEECCEEEEECCCCCCC
Confidence 2 2221122222 2455554 4332 3578888 544 3654322111 11111 1123567776431
Q ss_pred -----CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE-EEccC-----CcEEEEEeecCcccc
Q 003327 707 -----NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC-ICTSS-----GSIHILRVNLDVTGK 775 (829)
Q Consensus 707 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-----G~l~~~d~~~~~~~~ 775 (829)
...+++||+.+. .|+...+-+... .. .+....++.+| +|..+ ..+++||..++
T Consensus 163 ~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r---~~-------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~---- 226 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATE--TWTELCPMIEAR---KN-------HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN---- 226 (306)
T ss_dssp TTCEECCCEEEEETTTT--EEEEECCCSSCC---BS-------CEEEEETTEEEEECCEETTEEBCCEEEEETTTT----
T ss_pred CcccccceEEEeCCCCC--eEEECCCccchh---hc-------ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC----
Confidence 345889998876 465432211100 00 00011133333 33322 35778877643
Q ss_pred ccccccccceeeeee-ccCCcc-cccceEECCEEEEee------eCCeEEEEecccccc
Q 003327 776 ENQSKDHMVQEFAKL-ELQGDI-FSSPVMIGGRVFVGC------RDDYIYCIALETQHL 826 (829)
Q Consensus 776 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~vg~------~~g~l~~~d~~tg~~ 826 (829)
.|... .++... ..+.++.++.||+.. ..+.+++||+++.+.
T Consensus 227 ----------~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 227 ----------EWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp ----------EEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred ----------cEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 22222 122221 223445678777743 235789999988764
No 379
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.12 E-value=0.0027 Score=72.85 Aligned_cols=232 Identities=13% Similarity=0.044 Sum_probs=116.8
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCC----CcEEEEEecCCeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLT----GDIYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~t----G~~~w~~~~~~~~~~ 562 (829)
.|++.. .+.|+.+++.+++........... ..+.+...++.||+... .+.|+.+++.+ ...............
T Consensus 379 ~ll~~~-~~~I~~id~~~~~~~~~~~~~~~p-~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 379 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNV-VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp CBCCCC-TTC-CEECTTSCCEECCSCCCTTC-CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred eEEecC-ccceEEEeCCCCcceeeeccCcce-EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 344433 346888888776654322211221 24455555667777643 46788888654 111111111101111
Q ss_pred eeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEe
Q 003327 563 QPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+. ...+.|+.+++..................++++..++.||++... +.|+.++++....+.+..
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 22344345667765 345789999977554433332222222345566556788876642 678888766311111111
Q ss_pred eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCC
Q 003327 640 HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
.... ....+++.+++++||+... .+.|..++.+|.....+......+..|. +..+ .+.||+.. ..+.|..+++.
T Consensus 537 ~~l~--~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd-~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 537 ENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SSCS--SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE-TTEEEEECSTTTCEEEEETT
T ss_pred CCCC--CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE-CCEEEEEeCCCCeEEEEEcc
Confidence 1111 1134556556777777653 5678889844433222211111112221 1223 34566554 56789999998
Q ss_pred CCcEEEEE
Q 003327 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 614 ~G~~~~~i 621 (699)
T 1n7d_A 614 TGSDVNLL 621 (699)
T ss_dssp TEEEEECC
T ss_pred CCCceEEe
Confidence 99876544
No 380
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.06 E-value=0.1 Score=53.14 Aligned_cols=172 Identities=9% Similarity=0.029 Sum_probs=84.0
Q ss_pred CEEEEEEcCCCcEEEEEecC-C--eeeeeeeeecCCCEEEEecc----C-------CeEEEEEcCCCeEEEeeccC--Cc
Q 003327 538 GKIYFLDYLTGDIYWTFQTC-G--EVKCQPVVDAPRQLIWCGSH----D-------HNLYALDFRNYRCVYKLPCG--GS 601 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~-~--~~~~~~~~~~~~~~i~~gs~----~-------g~l~~~d~~tg~~~w~~~~~--~~ 601 (829)
..+++||+.+++ |..... . ......++..++..+++|+. + ..+++||+.+++ |+.-.. ..
T Consensus 13 ~~~~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~ 88 (315)
T 4asc_A 13 EGAVAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMPPLPSP 88 (315)
T ss_dssp TEEEEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECCCBSSC
T ss_pred CceEEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECCCCCcc
Confidence 679999998876 764221 1 11122222333444555652 1 128899998875 643221 11
Q ss_pred c-cccceeecCCCEEEEEec---------CCeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee----
Q 003327 602 I-FGSPAIDEVHDVLYVAST---------SGRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV---- 664 (829)
Q Consensus 602 ~-~~~~~~~~~~~~l~v~t~---------~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~---- 664 (829)
. ..+.+.. ++.||+... ...++.||+.+ . .|+.-.. .+........ .++.+|+ |..
T Consensus 89 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 89 RCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS--F--KWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp EESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT--T--EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC--C--cEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 1 1122233 366666432 13588999886 3 4765332 2222222222 3445554 433
Q ss_pred --CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEE-EeeCC-----eEEEEeCCCCcEEEEEe
Q 003327 665 --DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLI-CSRNG-----SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 665 --~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~-~t~~g-----~l~~~d~~tG~~~w~~~ 725 (829)
...+.+|| .+. .|+.-...+. ...... ...++.||+ |..++ .+++||+.+. .|+..
T Consensus 162 ~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 162 KCLNKMCVYDPKKF--EWKELAPMQTARSLFGA-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp CBCCCEEEEETTTT--EEEECCCCSSCCBSCEE-EEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEE
T ss_pred cccceEEEEeCCCC--eEEECCCCCCchhceEE-EEECCEEEEEeccCCCCccceEEEEECCCC--eEEEC
Confidence 13578888 544 4654322111 111111 122556664 44332 5889998876 56544
No 381
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.04 E-value=0.23 Score=55.87 Aligned_cols=226 Identities=10% Similarity=-0.032 Sum_probs=121.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
..|+++ ..+.|..+|+.+.+........+ .......+...++.||+... ++.|+.+++..+........+-......
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 344444 44569999998765433333322 11224455555677777654 5789999875544332232221112234
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeec
Q 003327 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~ 641 (829)
+++..++.||+.. ..+.|..+++......-........-..+++++..+.||+..+ .+.|+.++++...-..+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--P 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--C
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--C
Confidence 4554556676654 3567888887543211111111112234567766789998764 467888887742112222 1
Q ss_pred cCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeec-CCceeecCcccccCCCeEEEEee-CCeEEEEeCCCC
Q 003327 642 LEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG 718 (829)
........++...++++|++.. .+.|..+|.+|...-.+.. ....+.. .. .++.+|+... .+.|+.+|+.+|
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~gl---av-~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGL---TQ-YQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEE---EE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEE---EE-ECCEEEEecCCCCEEEEEECCCC
Confidence 1122244556666788887754 5678888833322111111 1111211 12 2467887764 688999998888
Q ss_pred cE
Q 003327 719 NL 720 (829)
Q Consensus 719 ~~ 720 (829)
+.
T Consensus 239 ~~ 240 (628)
T 4a0p_A 239 QN 240 (628)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 382
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.02 E-value=0.19 Score=50.77 Aligned_cols=209 Identities=14% Similarity=0.167 Sum_probs=99.3
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Cee-eeeee
Q 003327 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEV-KCQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~-~~~~~ 565 (829)
..+.+||+.+.+ |..-. +.......++..++..+++|..+ ..+++||..+.+ |+.... ... ....+
T Consensus 30 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEER--WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred CcEEEEcCcCCc--EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCccccceEEE
Confidence 358999998775 76432 21111122233343344445433 358999987764 654321 111 11122
Q ss_pred eecCCCEEE-EeccC-----CeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEec--------CCeEEEEE
Q 003327 566 VDAPRQLIW-CGSHD-----HNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAST--------SGRLTAIS 628 (829)
Q Consensus 566 ~~~~~~~i~-~gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t~--------~g~l~~~~ 628 (829)
+. + +.|| +|+.+ ..+++||+.+.+ |+... ..... ...+.. ++.||+... ...++.||
T Consensus 106 ~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 106 VL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp EE-T-TEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEE
T ss_pred EE-C-CEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEe
Confidence 22 2 4444 45443 258899988765 54322 11111 122223 366766431 23588999
Q ss_pred ccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-EeeC-----CeEEEEc-CCCCEEEEeecCCce-eecCcccccCC
Q 003327 629 VKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLVD-----GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALP 698 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~~-----g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~ 698 (829)
+.+ . .|..-.. .+........ .++.+|+ |..+ ..+.+|| .++ .|+.-...+. ..... ....+
T Consensus 180 ~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~-~~~~~ 251 (302)
T 2xn4_A 180 ATT--N--EWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAG-VCAVN 251 (302)
T ss_dssp TTT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCE-EEEET
T ss_pred CCC--C--cEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCe-EEEEC
Confidence 886 3 4654322 2221222222 2445554 4332 3588888 554 3654322111 01111 11225
Q ss_pred CeEEEEe-eC-----CeEEEEeCCCCcEEEEE
Q 003327 699 SQVLICS-RN-----GSIYSFEQESGNLLWEY 724 (829)
Q Consensus 699 ~~i~~~t-~~-----g~l~~~d~~tG~~~w~~ 724 (829)
+.||+.. .+ ..+++||+++.+ |+.
T Consensus 252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 252 GLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred CEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 5666543 22 348888887764 653
No 383
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.02 E-value=0.19 Score=51.27 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=79.7
Q ss_pred cEEEEECCCCcEEEEE-EcC---CceeeceEEeeCCcEEEEEEe----CC-------EEEEEEcCCCcEEEEEec--CCe
Q 003327 497 KFICADAKRSSVLWEI-KLE---GRIECSAAVLADFSQVVVGCY----KG-------KIYFLDYLTGDIYWTFQT--CGE 559 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~-~~~---~~~~~~~~~~~~~~~v~vg~~----dg-------~l~~~d~~tG~~~w~~~~--~~~ 559 (829)
.+.+||+.+++ |.. ... .+.. ..++..++..+++|.. ++ .+++||..++ .|+... +..
T Consensus 25 ~~~~yd~~~~~--W~~~~~~~~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENE--CYLTALAEQIPRNH-SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLPPLPSA 99 (318)
T ss_dssp EEEEEETTTTE--EEEEEECTTSCSSE-EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECSCBSSC
T ss_pred ceEEECCCCCc--eecccCCccCCccc-eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECCCCCcc
Confidence 38999998886 654 222 1211 2233334444455552 11 2888998765 465321 111
Q ss_pred ee-eeeeeecCCCEEE-EeccC-------CeEEEEEcCCCeEEEeecc--CCcccc-cceeecCCCEEEEEec-------
Q 003327 560 VK-CQPVVDAPRQLIW-CGSHD-------HNLYALDFRNYRCVYKLPC--GGSIFG-SPAIDEVHDVLYVAST------- 620 (829)
Q Consensus 560 ~~-~~~~~~~~~~~i~-~gs~~-------g~l~~~d~~tg~~~w~~~~--~~~~~~-~~~~~~~~~~l~v~t~------- 620 (829)
.. ...+.. + +.|| +|+.+ ..+++||+.+.+ |+... ...... +.+.. ++.||+...
T Consensus 100 r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 100 RCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKC 173 (318)
T ss_dssp BCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCB
T ss_pred ccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCc
Confidence 11 112222 2 4444 45432 248899988764 65422 111111 22222 366766431
Q ss_pred CCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeC-----CeEEEEc-CCCCEEEEe
Q 003327 621 SGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVD-----GHVVALD-SSGSIIWRC 681 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~-----g~i~~~d-~~g~~~w~~ 681 (829)
...++.||+.+ . .|..-... +.........++..+++|..+ ..+.+|| .+.+ |+.
T Consensus 174 ~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 236 (318)
T 2woz_A 174 TNRVFIYNPKK--G--DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEV 236 (318)
T ss_dssp CCCEEEEETTT--T--EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEE
T ss_pred cceEEEEcCCC--C--EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe--EEE
Confidence 23589999887 3 46543222 211112222233334444322 3467888 5543 654
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=96.99 E-value=0.22 Score=53.20 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=140.8
Q ss_pred cccccccccccccc-----ccceEEeeC--CCeEEEEecCCCc----------------------------EEEEECCCC
Q 003327 462 IQELWKVHMESCVD-----ASPLVVLKD--SDIYLFVGSHSHK----------------------------FICADAKRS 506 (829)
Q Consensus 462 ~~~~W~~~~~~~~~-----~sp~v~~~d--~~~~l~igs~~g~----------------------------l~~~d~~tg 506 (829)
.+.+|+.+++..+. .++.|.--| ...-|++.+.+|. |.+||-.||
T Consensus 160 G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG 239 (591)
T 2zux_A 160 GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG 239 (591)
T ss_dssp SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTC
T ss_pred CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCC
Confidence 56779988876543 234444222 2346777776654 899999999
Q ss_pred cEEEEEEcC-Cceee--------------ceEEee-CCc--EEEEEE---eCCEEEEEEcCCCcE--EEEEecCCee---
Q 003327 507 SVLWEIKLE-GRIEC--------------SAAVLA-DFS--QVVVGC---YKGKIYFLDYLTGDI--YWTFQTCGEV--- 560 (829)
Q Consensus 507 ~~~w~~~~~-~~~~~--------------~~~~~~-~~~--~v~vg~---~dg~l~~~d~~tG~~--~w~~~~~~~~--- 560 (829)
+.+++++.. .+-.. .+.+.. ++. .++++- ....|.+||..++++ +|++.....-
T Consensus 240 ~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~ 319 (591)
T 2zux_A 240 KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEA 319 (591)
T ss_dssp CEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGG
T ss_pred CEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCccc
Confidence 999987753 11100 122221 222 233332 123589999888874 8998764310
Q ss_pred -----eeeeeeec----CCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-cccccceeecC--CCEEEEEecC----CeE
Q 003327 561 -----KCQPVVDA----PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEV--HDVLYVASTS----GRL 624 (829)
Q Consensus 561 -----~~~~~~~~----~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~--~~~l~v~t~~----g~l 624 (829)
...+.+.+ ...-|+.|+. ++| .+|+.+|....+. .....--++++ +-.+|....+ ...
T Consensus 320 ~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~ 393 (591)
T 2zux_A 320 FAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGL 393 (591)
T ss_dssp GSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSE
T ss_pred ccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCcc
Confidence 11222221 1223555542 556 7899999886532 11111112222 2246665543 135
Q ss_pred EEEEccCCCceEEEeeccCCcce--eeeeeeec--CCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCC--
Q 003327 625 TAISVKALPFHTLWLHELEVPAF--ASLCITSA--NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP-- 698 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~--~s~~~~~~--~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~-- 698 (829)
...|..+ |+.+|........- ....+.++ +-.+|. ++ ..++.+|+.++.......-+. +.-+.+
T Consensus 394 ~~~dA~t--G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~G~~i~~~~p~~~N~~---i~WdGDl~ 463 (591)
T 2zux_A 394 SFRDAAT--GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAKGVKIGSGVPSSTNFG---IWWDGDLL 463 (591)
T ss_dssp EEEETTT--CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTTSCBCSSCCCSCCSEE---ECCSSSSS
T ss_pred EEEECCC--CcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCCCCEecCCCCCCccee---EEECCCCc
Confidence 5578777 99999885432110 11111111 234554 23 345667777765311100010 111111
Q ss_pred CeEEEEeeCCeEEEEeCCCCc--EEEEEec---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003327 699 SQVLICSRNGSIYSFEQESGN--LLWEYSV---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~tG~--~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..++- .+.|..|+..+++ .++++.. .+.....|+...++. ..- .+..|+-...+..|++|...
T Consensus 464 relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~--GDw---REEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 464 REQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLL--GDW---REEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp CEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCS--SSS---SCEEEEEETTSSEEEEECCC
T ss_pred HhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEecc--ccC---eeEEEEEeCCCCeEEEEeCC
Confidence 12322 3478889987776 4455431 112223333322111 000 14455555566679988553
No 385
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.98 E-value=0.22 Score=51.20 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=97.6
Q ss_pred CCeEEEEec-------------CCCcEEEEECCC--CcEE-EEEEcC--C--ce-eeceEEee--CC-cEEEEEEeCC--
Q 003327 485 SDIYLFVGS-------------HSHKFICADAKR--SSVL-WEIKLE--G--RI-ECSAAVLA--DF-SQVVVGCYKG-- 538 (829)
Q Consensus 485 ~~~~l~igs-------------~~g~l~~~d~~t--g~~~-w~~~~~--~--~~-~~~~~~~~--~~-~~v~vg~~dg-- 538 (829)
.++.+|+++ .+|.|+.+|+++ ++.. +..... + .. --...+.. ++ .++|+.....
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~ 138 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS 138 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC
Confidence 467888887 588999999873 4432 222210 1 01 00112222 22 3577764331
Q ss_pred ---EEEEEEcCCCcEEEEEecCCee--eeeeeeecCCCEEEEecc------------------CCeEEEEEcCCCeEEEe
Q 003327 539 ---KIYFLDYLTGDIYWTFQTCGEV--KCQPVVDAPRQLIWCGSH------------------DHNLYALDFRNYRCVYK 595 (829)
Q Consensus 539 ---~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~~i~~gs~------------------~g~l~~~d~~tg~~~w~ 595 (829)
.|+.+|..++...+.....+.. ...-+..+.++.+|+++. .|.||.+|+.+-+.+
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~-- 216 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV-- 216 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--
T ss_pred CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--
Confidence 3777887666555443332211 111222234577877643 367888887422211
Q ss_pred eccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEE--eeccCCcceeeeeeeecCCEEEEEee-C-CeEEE
Q 003327 596 LPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLW--LHELEVPAFASLCITSANRHVICCLV-D-GHVVA 670 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w--~~~~~~~~~~s~~~~~~~~~l~~~~~-~-g~i~~ 670 (829)
..+-...+.+++++++..+|++. ..+.|++|+.+. .|+..- .+... ...-...+..+++.+|++.. + +.+.+
T Consensus 217 -~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-~g~l~~~~~~~~~-g~PDGi~vD~e~G~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 217 -AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA-NWTLTPLRVLSFD-TLVDNISVDPVTGDLWVGCHPNGMRIFF 293 (355)
T ss_dssp -EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-TSCEEEEEEEECS-SEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred -ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC-CCcEecCEEEeCC-CCCceEEEeCCCCcEEEEecCCceEEEE
Confidence 11112334566777778898875 467899999863 243211 11111 11122233322478999653 3 34555
Q ss_pred EcC---CCCEEEEee
Q 003327 671 LDS---SGSIIWRCR 682 (829)
Q Consensus 671 ~d~---~g~~~w~~~ 682 (829)
++. .+..++++.
T Consensus 294 ~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 294 YDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCTTSCCCEEEEEEE
T ss_pred ECCCCCCCCEEEEEE
Confidence 562 356666655
No 386
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.18 Score=53.97 Aligned_cols=146 Identities=9% Similarity=0.025 Sum_probs=83.3
Q ss_pred eEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEE--
Q 003327 522 AAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCV-- 593 (829)
Q Consensus 522 ~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~-- 593 (829)
.++.+ +++.||+....+.|+.+|++++++.-... .........++.+++.||+.... ..++.++... ...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~ 219 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVI 219 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSE
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeee
Confidence 45553 35789998876889999988776543332 22323445566666768887652 2456666433 221
Q ss_pred EeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCC-cceeeeeeeecCCEEEEEe-eCCeEEE
Q 003327 594 YKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICCL-VDGHVVA 670 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~ 670 (829)
..+.. .......+++++++.||++. .++.|+.+++++ +.......... ......++.++++.+|+.. .++.|+.
T Consensus 220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT--QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT--TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 11111 11122344565467788876 457899999886 44311122211 1123456666777777775 4567888
Q ss_pred Ec
Q 003327 671 LD 672 (829)
Q Consensus 671 ~d 672 (829)
++
T Consensus 297 ~~ 298 (430)
T 3tc9_A 297 SD 298 (430)
T ss_dssp EE
T ss_pred Ee
Confidence 77
No 387
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.92 E-value=0.27 Score=50.00 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=79.9
Q ss_pred CEEEEEEcCCCcEEEEEe-cC--CeeeeeeeeecCCCEEEEecc----CC-------eEEEEEcCCCeEEEeecc--CCc
Q 003327 538 GKIYFLDYLTGDIYWTFQ-TC--GEVKCQPVVDAPRQLIWCGSH----DH-------NLYALDFRNYRCVYKLPC--GGS 601 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~-~~--~~~~~~~~~~~~~~~i~~gs~----~g-------~l~~~d~~tg~~~w~~~~--~~~ 601 (829)
..+.+||+.+++ |... .. .......++..++..+++|+. ++ .++.||+.+++ |+.-. ...
T Consensus 24 ~~~~~yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~ 99 (318)
T 2woz_A 24 TAAVAYDPMENE--CYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGLPPLPSA 99 (318)
T ss_dssp SEEEEEETTTTE--EEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEECSCBSSC
T ss_pred cceEEECCCCCc--eecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEECCCCCcc
Confidence 358999988876 5431 11 111112222323444555652 11 28889988764 54322 111
Q ss_pred c-cccceeecCCCEEEE-EecC-------CeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee-----
Q 003327 602 I-FGSPAIDEVHDVLYV-ASTS-------GRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV----- 664 (829)
Q Consensus 602 ~-~~~~~~~~~~~~l~v-~t~~-------g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~----- 664 (829)
. ..+.+.. ++.||+ |..+ ..+++||+.+ . .|+.-.. .+........ .++.+|+ |..
T Consensus 100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVA--A--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTT--T--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCC--C--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1 1122223 356655 3322 2478888876 3 4654322 2222222222 3455554 332
Q ss_pred -CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe-eC-----CeEEEEeCCCCcEEEEEe
Q 003327 665 -DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-RN-----GSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 665 -~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~~-----g~l~~~d~~tG~~~w~~~ 725 (829)
...+.+|| .+. .|+.-...+. ...... ...++.||+.. .+ ..+++||+++.+ |+..
T Consensus 173 ~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 237 (318)
T 2woz_A 173 CTNRVFIYNPKKG--DWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVM 237 (318)
T ss_dssp BCCCEEEEETTTT--EEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEEC
T ss_pred ccceEEEEcCCCC--EEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCe--EEEC
Confidence 23488888 554 3654322111 111111 12245666542 21 357889987764 6543
No 388
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=96.91 E-value=0.0012 Score=54.85 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHhcccCcceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003327 287 ASDLLQVIRKAFGHALMVEEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..++.+.|++++.+.++ |.++++| -++|.|||.+++|+..| .++...+....|+..|+.++.+...
T Consensus 28 ~~ei~~~v~~il~e~l~---I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l~ 100 (113)
T 2cgq_A 28 EEAINATIQRILRTDRG---ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWFP 100 (113)
T ss_dssp HHHHHHHHHHHHTCCSC---CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHHh
Confidence 35688899999999988 8899999 58999999999998765 4677789999999999999987653
No 389
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.88 E-value=0.14 Score=51.90 Aligned_cols=206 Identities=9% Similarity=0.037 Sum_probs=97.5
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEe----C-----CEEEEEEcCCCcEEEEEecC--Cee-e
Q 003327 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCY----K-----GKIYFLDYLTGDIYWTFQTC--GEV-K 561 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~----d-----g~l~~~d~~tG~~~w~~~~~--~~~-~ 561 (829)
..+++||+.+++ |+.-. +..-....++..++..+++|.. + ..+++||+.+.+ |+.... ... .
T Consensus 39 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~ 114 (308)
T 1zgk_A 39 SYLEAYNPSNGT--WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPMSVPRNR 114 (308)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCCCSSCCBT
T ss_pred ceEEEEcCCCCe--EeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe--EeECCCCCcCccc
Confidence 368999998776 76421 1111112223334334444543 2 358999987764 654221 111 1
Q ss_pred eeeeeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEe-c-----CCeEEE
Q 003327 562 CQPVVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTA 626 (829)
Q Consensus 562 ~~~~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~ 626 (829)
...+.. ++.||+ |+.+ ..+++||+.+++ |+... ..... .+.+.. ++.||+.. . ...++.
T Consensus 115 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 115 IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEE
Confidence 112222 245554 4322 458999998864 55422 11111 122233 36666643 2 245889
Q ss_pred EEccCCCceEEEeeccCC--cceeeeeeeecCCEEEE-EeeC-----CeEEEEc-CCCCEEEEeecCCce-eecCccccc
Q 003327 627 ISVKALPFHTLWLHELEV--PAFASLCITSANRHVIC-CLVD-----GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFA 696 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~-~~~~-----g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~ 696 (829)
||+.+ . .|..-... +......... ++.+|+ |..+ ..+++|| .+. .|+.-...+. ...... ..
T Consensus 189 yd~~~--~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~-~~ 260 (308)
T 1zgk_A 189 YYPER--N--EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGI-TV 260 (308)
T ss_dssp EETTT--T--EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEE-EE
T ss_pred EeCCC--C--eEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEE-EE
Confidence 99886 3 46543221 2111222222 455554 4332 4588888 544 4654322111 011111 11
Q ss_pred CCCeEEEEe-e-----CCeEEEEeCCCCc
Q 003327 697 LPSQVLICS-R-----NGSIYSFEQESGN 719 (829)
Q Consensus 697 ~~~~i~~~t-~-----~g~l~~~d~~tG~ 719 (829)
.++.||+.. . ...+++||+++.+
T Consensus 261 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 261 HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 245666543 2 2457888877653
No 390
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.84 E-value=0.2 Score=51.29 Aligned_cols=257 Identities=9% Similarity=0.033 Sum_probs=118.9
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC-----CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC----
Q 003327 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC-----GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---- 599 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~---- 599 (829)
+.+|+....+.|+.- .+|-..|+.... ........+.+ +.+|+.+..+.|+. . .+|-.-|+....
T Consensus 47 ~~~~~~G~~g~i~~s--~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~-S-~DgG~tW~~~~~~~~~ 120 (327)
T 2xbg_A 47 HHGWLVGVNATLMET--RDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH-T-TDGGQSWSQIPLDPKL 120 (327)
T ss_dssp SCEEEEETTTEEEEE--SSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE-E-SSTTSSCEECCCCTTC
T ss_pred CcEEEEcCCCeEEEe--CCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE-E-CCCCCCceECccccCC
Confidence 455555556766543 344445764321 11222333433 66777766676665 3 333335654321
Q ss_pred -CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEcCCCC
Q 003327 600 -GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 600 -~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~ 676 (829)
+.. ..+...+ ++.+|+.+.+|.++.- .+ +-.-|+..... ..+......+ ++.+++....|.++.-+..|-
T Consensus 121 ~~~~-~~i~~~~-~~~~~~~~~~g~v~~S-~D---gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG 193 (327)
T 2xbg_A 121 PGSP-RLIKALG-NGSAEMITNVGAIYRT-KD---SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ 193 (327)
T ss_dssp SSCE-EEEEEEE-TTEEEEEETTCCEEEE-SS---TTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTC
T ss_pred CCCe-EEEEEEC-CCCEEEEeCCccEEEE-cC---CCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCC
Confidence 112 1222222 4678877777766542 22 33446543221 1223333333 445555556677766543323
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE
Q 003327 677 IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
..|+............+....++.+|+.+.+|.++..+ .++-..|+............+ ..+ . ...++.+|+
T Consensus 194 ~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~---~~v---~-~~~~~~~~~ 265 (327)
T 2xbg_A 194 TAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD-PDNSENWGELLSPLRRNSVGF---LDL---A-YRTPNEVWL 265 (327)
T ss_dssp SSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEECCCBCTTSSCCSCE---EEE---E-ESSSSCEEE
T ss_pred CceeECCCCCCCccceeEECCCCCEEEEeCCceEEEec-CCCCCeeEeccCCcccCCcce---EEE---E-ecCCCEEEE
Confidence 34543211110000011123467899988888776654 233345653211100000000 000 0 011455676
Q ss_pred EccCCcEEEEEeecCccccccccccccceeeeeec----cCCcccccceE-ECCEEEEeeeCCeEEEEec
Q 003327 757 CTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGDIFSSPVM-IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~l~vg~~~g~l~~~d~ 821 (829)
.+.+|.|+.- .+.| +.|.... ++.. +..... .++.+|+.+.+|.++.++.
T Consensus 266 ~g~~g~i~~S-~DgG-------------~tW~~~~~~~~~~~~-~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 266 AGGAGALLCS-QDGG-------------QTWQQDVDVKKVPSN-FYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EESTTCEEEE-SSTT-------------SSCEECGGGTTSSSC-CCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EeCCCeEEEe-CCCC-------------cccEEcCccCCCCCC-eEEEEEECCCceEEEcCCceEEEEcC
Confidence 6667777532 2222 2222222 1122 222222 5778999999999999875
No 391
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.83 E-value=0.26 Score=47.94 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=103.0
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEE---EecC
Q 003327 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWT---FQTC 557 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~---~~~~ 557 (829)
++++||+ ...++.|+.+|+. |+++.+..+.+ ..+ ..++..+ +.+|+.+ .++.++.++..+...+|. ...+
T Consensus 37 ~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E-GIa~~~~-g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~ 113 (255)
T 3qqz_A 37 QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE-TIEYIGD-NQFVISDERDYAIYVISLTPNSEVKILKKIKIP 113 (255)
T ss_dssp TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE-EEEECST-TEEEEEETTTTEEEEEEECTTCCEEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH-HeEEeCC-CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc
Confidence 4677886 4567899999997 99988887653 232 3344444 4555554 456888887654333332 2211
Q ss_pred C------eeeeeeeeecCCCEEEEeccCC--eEEEEEc--CCC--eEEEe--e--ccCCcccccceeecCCCEEEEEecC
Q 003327 558 G------EVKCQPVVDAPRQLIWCGSHDH--NLYALDF--RNY--RCVYK--L--PCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 558 ~------~~~~~~~~~~~~~~i~~gs~~g--~l~~~d~--~tg--~~~w~--~--~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
- .-.-..++++.++.+|++.... .||.++- .+. +.... + ...-.-.+...+++..+.+|+-+..
T Consensus 114 ~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~ 193 (255)
T 3qqz_A 114 LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE 193 (255)
T ss_dssp CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT
T ss_pred cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC
Confidence 0 0113445666677888876542 5777772 111 11111 0 0111234566778777888887764
Q ss_pred -CeEEEEEccCCCceEEEeeccCCc---------ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 622 -GRLTAISVKALPFHTLWLHELEVP---------AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 622 -g~l~~~~~~~~~g~~~w~~~~~~~---------~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..|..+|.+ |+.+-.+.+... -...+++.. ++++|+.+..+-+|.|.
T Consensus 194 s~~L~~~d~~---g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 194 SRALQEVTLV---GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp TTEEEEECTT---CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEETTTEEEEEE
T ss_pred CCeEEEEcCC---CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcCCceEEEEE
Confidence 557778766 666665555421 123344444 44677777666666665
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=96.80 E-value=0.17 Score=53.97 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=103.0
Q ss_pred CEEEEEEcCCCcEEEEEecCCeee-----eeeeeec----CCCEEEEeccCCe---------------------------
Q 003327 538 GKIYFLDYLTGDIYWTFQTCGEVK-----CQPVVDA----PRQLIWCGSHDHN--------------------------- 581 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~-----~~~~~~~----~~~~i~~gs~~g~--------------------------- 581 (829)
..|.+|++ +|+.+|++..+..+. ..+.+.+ ...-|++.+.+|.
T Consensus 151 ~~l~aY~l-dG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKL-DGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 45888986 599999987654322 2233322 1234666655443
Q ss_pred -EEEEEcCCCeEEEeeccCC---cc---------------cccceeecCCCEEEEEe---cCCeEEEEEccCCCceEEEe
Q 003327 582 -LYALDFRNYRCVYKLPCGG---SI---------------FGSPAIDEVHDVLYVAS---TSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 582 -l~~~d~~tg~~~w~~~~~~---~~---------------~~~~~~~~~~~~l~v~t---~~g~l~~~~~~~~~g~~~w~ 639 (829)
|.++|-.||+.+++..... .. .....++.+.-.++++. ....+.+||.++..-+.+|.
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 8999999999999876521 11 01111233222344433 12358899988733357898
Q ss_pred eccCCcc--------eeeeeeee---c-CCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccccCCCeEEEEe
Q 003327 640 HELEVPA--------FASLCITS---A-NRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 640 ~~~~~~~--------~~s~~~~~---~-~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t 705 (829)
+....+. ..++.+.. + ...|++|+ .++|.+|+.+|....+. .+....+.+...+-.+|.+.
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~ 384 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVH 384 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEEC
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEe
Confidence 8765321 01222211 1 22444443 26788999999986532 12222222222233577765
Q ss_pred eC----CeEEEEeCCCCcEEEEEec
Q 003327 706 RN----GSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 706 ~~----g~l~~~d~~tG~~~w~~~~ 726 (829)
.+ .+....|..||+++|....
T Consensus 385 E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 385 EDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCTTSSCSEEEEETTTCCEEEEECC
T ss_pred cCCCCCCccEEEECCCCcEEEEcCC
Confidence 54 1466789999999998864
No 393
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.79 E-value=0.54 Score=47.65 Aligned_cols=194 Identities=9% Similarity=0.046 Sum_probs=109.9
Q ss_pred EEEEec-CCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCc---EEEEEEeC---CEEEEE--EcCCCcEEEEEe-
Q 003327 488 YLFVGS-HSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFS---QVVVGCYK---GKIYFL--DYLTGDIYWTFQ- 555 (829)
Q Consensus 488 ~l~igs-~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~---~v~vg~~d---g~l~~~--d~~tG~~~w~~~- 555 (829)
.+++++ ..+.|+.||+ +|+.+-.+..+. .+...+.+.-.++ .+++...+ +.|..| |..++++. ...
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~-~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ-SMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE-ECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee-eccc
Confidence 345555 4567999999 799987765421 1111222322232 34555543 566655 66677632 221
Q ss_pred ------cC-Ceeeeeeee-ecCCC--EEEEeccCCeEEEEEc-------CCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003327 556 ------TC-GEVKCQPVV-DAPRQ--LIWCGSHDHNLYALDF-------RNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 556 ------~~-~~~~~~~~~-~~~~~--~i~~gs~~g~l~~~d~-------~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
.. ..+....++ ++..+ ++|+...+|.+..|+. .+++.+.++..++.. -.+++++..+.||++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~-EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT-EGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE-EEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc-ceEEEcCCCCeEEEe
Confidence 11 222222232 23234 5777888888877665 234667777776543 356677778999999
Q ss_pred ecCCeEEEEEccCCC---ceEEEeeccCC--cceeeeeee--ecC-CEEEEEee-CCeEEEEc-C-CCCEEEEeecC
Q 003327 619 STSGRLTAISVKALP---FHTLWLHELEV--PAFASLCIT--SAN-RHVICCLV-DGHVVALD-S-SGSIIWRCRTG 684 (829)
Q Consensus 619 t~~g~l~~~~~~~~~---g~~~w~~~~~~--~~~~s~~~~--~~~-~~l~~~~~-~g~i~~~d-~-~g~~~w~~~~~ 684 (829)
-.+..|+.|+.+... ++.+....... .......+. .++ +++++.+. ++.+.+|| . +.+.+-.+.++
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence 999889999966322 45555443221 112333443 223 36777663 56788888 4 55666555543
No 394
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.74 E-value=0.47 Score=53.23 Aligned_cols=224 Identities=8% Similarity=-0.036 Sum_probs=112.1
Q ss_pred CCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcE-EEEEecCCeeeeeeeeecCC
Q 003327 494 HSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDI-YWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~ 570 (829)
..+.|..+|+......-.... .........+...++.||+... .+.|++++...... ......+-......+++..+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 345688888764421111111 1111224455555677877754 56888888654421 12222221222334555546
Q ss_pred CEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcce
Q 003327 571 QLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 571 ~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
+.||+.. ..+.|..++.......-........-..+++++.++.+|++.. .+.|...+.+...-..+-..... ..
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~--~P 173 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY--WP 173 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS--SE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC--CC
Confidence 7777764 4577888886643322111111122335567777789998875 36788888763111122111111 12
Q ss_pred eeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003327 648 ASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
...++...++++|++.. .+.|..+|.+|.....+..+ ....|.-....++.+|+.. .++.|..+|+.+|+..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC--CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 34556556788887753 56788888556544333211 1122221112244777764 4678999999888653
No 395
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=96.69 E-value=0.0021 Score=52.88 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcccCcc----eeccCCCcc-ccCC-ChHHHHHHHHHc------CCcchhh--hcCCCHHHHHHHHHhhc
Q 003327 289 DLLQVIRKAFGHALMVE----EVLHHDNFF-TMGG-NSIAAAHVAHNL------GIDMRLI--YNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~----~i~~~~~Ff-~lGg-dSl~a~~l~~~l------~~~~~~~--~~~pt~~~la~~l~~~~ 354 (829)
++.+.+++++.+.++++ ++.++.+|+ ++|. |||.+++|...| .++...+ -...|+..|+.++.++.
T Consensus 24 ~i~~~i~~il~e~l~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~~ 103 (105)
T 2lki_A 24 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKL 103 (105)
T ss_dssp CTHHHHHHHHHHHTTCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHHh
Confidence 35667888888888754 688899999 5999 999999998765 3666664 36899999999998754
No 396
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.67 E-value=0.41 Score=55.17 Aligned_cols=225 Identities=9% Similarity=0.035 Sum_probs=109.2
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCe----EEEeeccCCcccc
Q 003327 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYR----CVYKLPCGGSIFG 604 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~----~~w~~~~~~~~~~ 604 (829)
.+++.. ...|+.+++..++.......... .....++...+.||+... .+.|+.+++.... ..-.+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~-~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSS-EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCc-eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 344443 34577888766554433322222 233445544667776543 4678888876421 1111111112223
Q ss_pred cceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEe
Q 003327 605 SPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRC 681 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~ 681 (829)
.++++..++.||++.. .+.|.+++++...-+.+-...... ...+++.+..+.||+.... +.|..++.+|...-.+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~--P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK--PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC--cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 4556655677877654 577888888741111221111111 2455666667888887643 5688887556543222
Q ss_pred ecCCceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE-EE
Q 003327 682 RTGGPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC-IC 757 (829)
Q Consensus 682 ~~~~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 757 (829)
-... +..| .+..+ .++.||+.. ..+.|..++.. |..+..+.........|+.. ...++.|| +-
T Consensus 553 v~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~gl----------av~~~~lYwtD 619 (791)
T 3m0c_C 553 VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSL----------AVFEDKVFWTD 619 (791)
T ss_dssp ECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEE----------EEETTEEEEEE
T ss_pred EeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEE----------EEeCCEEEEEE
Confidence 1111 1111 12222 356787774 45678888864 44433332111111111100 01134444 44
Q ss_pred ccCCcEEEEEeecC
Q 003327 758 TSSGSIHILRVNLD 771 (829)
Q Consensus 758 ~~~G~l~~~d~~~~ 771 (829)
...+.|+.+|..+|
T Consensus 620 ~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 620 IINEAIFSANRLTG 633 (791)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCEEEEEeCCCC
Confidence 55677888886655
No 397
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.62 E-value=0.6 Score=46.90 Aligned_cols=247 Identities=12% Similarity=0.129 Sum_probs=125.2
Q ss_pred EEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC--------------CeEEEEE
Q 003327 523 AVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD--------------HNLYALD 586 (829)
Q Consensus 523 ~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~--------------g~l~~~d 586 (829)
.++.+++.||.... ++.||.++. +|.....+... .+ ..+...++.||..... ..||.++
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~-dg~~~~~l~~~-~~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNI-DGSNIHKLSND-TA---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEET-TSCSCEEEEEE-EE---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcC-CCCCCEEccCC-ce---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34456677877653 578999984 55444333321 11 1223345667665432 4688888
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEe----cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003327 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS----TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t----~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
...++.. .+..... . .+..+++.||... .+..|+..+++. ....+...... ..+...++.||..
T Consensus 95 ~dg~~~~-~l~~~~~--~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG---s~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 95 RNGHGST-VLDPDPC--I--YASLIGNYIYYLHYDTQTATSLYRIRIDG---EEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TTSCCCE-EEECSCE--E--EEEEETTEEEEEEESSSSCEEEEEEETTS---CCCEEEESSCC----CCSEEETTEEEEE
T ss_pred CCCCcce-EeecCCc--c--EEEEeCCEEEEEeecCCCCceEEEEECCC---CCeEEEeCCCc----eEeeEECCEEEEE
Confidence 7765422 2211111 1 2223457888765 355788888874 32222222111 2345567788877
Q ss_pred ee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeC--CeEEEEeCCCCcEEEEEecCCccccccccccc
Q 003327 663 LV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN--GSIYSFEQESGNLLWEYSVGDPITASAYIDEH 739 (829)
Q Consensus 663 ~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 739 (829)
+. ...|++++.+|....... .++.. .|..+ .++.||....+ ..|+..+.+.+.. ..+ ..... +.++
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~-~~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L-t~~~~---~~~~-- 231 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFY-DCNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVL-TEANI---EHYN-- 231 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEE-CSCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EEC-SCSCE---EEEE--
T ss_pred eCCCceEEEEECCCCCEEEEe-CCCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEE-eCCCc---ceEE--
Confidence 65 578899884444333332 22222 22221 35677766543 3688888765442 111 11111 1111
Q ss_pred cccccccccCCCcEEEEEcc--CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeee-CCeE
Q 003327 740 LQLKLESCLSIDRLVCICTS--SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCR-DDYI 816 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~--~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~~-~g~l 816 (829)
+.++.||..+. .+.|+..+.+... .+.+.. +. ..+..+.++.||.... .+.|
T Consensus 232 ---------~~g~~Iy~~~~~~~~~i~~~~~DG~~-----------r~~l~~----~~-~~~i~i~~d~Iy~td~~~~~i 286 (302)
T 3s25_A 232 ---------VYGSLIFYQRGGDNPALCVVKNDGTG-----------FKELAK----GE-FCNINVTSQYVYFTDFVSNKE 286 (302)
T ss_dssp ---------EETTEEEEEECSSSCEEEEEETTSCC-----------CEEEEE----SC-EEEEEECSSEEEEEETTTCCE
T ss_pred ---------ECCCEEEEEECCCCcEEEEEECCCCc-----------cEEeeC----Cc-cceEEEeCCEEEEEECCCCeE
Confidence 12666666532 3457776665321 011111 11 1244557888888763 4678
Q ss_pred EEEecc
Q 003327 817 YCIALE 822 (829)
Q Consensus 817 ~~~d~~ 822 (829)
++.+..
T Consensus 287 ~~~~~d 292 (302)
T 3s25_A 287 YCTSTQ 292 (302)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 888753
No 398
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=96.60 E-value=0.0043 Score=49.48 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc----CCcch---hhhcCCCHHHHHHHHHhhc
Q 003327 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL----GIDMR---LIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l----~~~~~---~~~~~pt~~~la~~l~~~~ 354 (829)
...++++.++++..+.+++ +.|.++.+|+ +||.|||.+++|+..+ ++.+. .-|...|+..++.+|.+..
T Consensus 11 ~~~~I~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vdyI~~~~ 89 (102)
T 2l9f_A 11 AATGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAEALEARE 89 (102)
T ss_dssp SSCCHHHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHHHHHHhh
Confidence 3567899999999999987 5699999987 8999999999887654 44432 2244599999999998865
No 399
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.60 E-value=0.42 Score=48.29 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCeEEEeeccC--Cc-ccccceeecCCCEEEEEe-c---------CCeEEEEEccCCCceEEEeeccCCc-
Q 003327 580 HNLYALDFRNYRCVYKLPCG--GS-IFGSPAIDEVHDVLYVAS-T---------SGRLTAISVKALPFHTLWLHELEVP- 645 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~--~~-~~~~~~~~~~~~~l~v~t-~---------~g~l~~~~~~~~~g~~~w~~~~~~~- 645 (829)
..+++||+.+++ |..-.. .. ...+.+.. ++.||+.. . ...++.||+.+ . .|+.-...+
T Consensus 39 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~--~W~~~~~~p~ 110 (308)
T 1zgk_A 39 SYLEAYNPSNGT--WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--N--QWSPCAPMSV 110 (308)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT--T--EEEECCCCSS
T ss_pred ceEEEEcCCCCe--EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC--C--eEeECCCCCc
Confidence 468999998875 654321 11 11122233 36666543 2 13588899886 3 465432221
Q ss_pred -ceeeeeeeecCCEEEEE-ee-----CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe-e-----CCeE
Q 003327 646 -AFASLCITSANRHVICC-LV-----DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-R-----NGSI 710 (829)
Q Consensus 646 -~~~s~~~~~~~~~l~~~-~~-----~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~-----~g~l 710 (829)
........ .++.+|+. .. ...+.+|| .+. .|+.-...+. ...... ...++.||+.. . ...+
T Consensus 111 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~ 186 (308)
T 1zgk_A 111 PRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVGV-AVLNRLLYAVGGFDGTNRLNSA 186 (308)
T ss_dssp CCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCE
T ss_pred CccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceEE-EEECCEEEEEeCCCCCCcCceE
Confidence 11111222 24555553 22 23577888 544 3554322111 011111 11256666543 2 2458
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC-----CcEEEEEeecCccccccccccccce
Q 003327 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS-----GSIHILRVNLDVTGKENQSKDHMVQ 785 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----G~l~~~d~~~~~~~~~~~~~~~~~~ 785 (829)
++||+.+. .|+....-+... ... ......+..+++|..+ ..+++||..++
T Consensus 187 ~~yd~~~~--~W~~~~~~p~~r---~~~------~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-------------- 241 (308)
T 1zgk_A 187 ECYYPERN--EWRMITAMNTIR---SGA------GVCVLHNCIYAAGGYDGQDQLNSVERYDVETE-------------- 241 (308)
T ss_dssp EEEETTTT--EEEECCCCSSCC---BSC------EEEEETTEEEEECCBCSSSBCCCEEEEETTTT--------------
T ss_pred EEEeCCCC--eEeeCCCCCCcc---ccc------eEEEECCEEEEEeCCCCCCccceEEEEeCCCC--------------
Confidence 89998766 465432111100 000 0001123333444332 45788887643
Q ss_pred eeeee-ccCCc-ccccceEECCEEEEee-e-----CCeEEEEecccccc
Q 003327 786 EFAKL-ELQGD-IFSSPVMIGGRVFVGC-R-----DDYIYCIALETQHL 826 (829)
Q Consensus 786 ~~~~~-~~~~~-~~~~~~~~~~~l~vg~-~-----~g~l~~~d~~tg~~ 826 (829)
.|... .++.. ...+.++.++.||+-. . ...+++||+++.+.
T Consensus 242 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 22221 12222 2234445678887743 2 35689999988764
No 400
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=96.54 E-value=0.21 Score=53.64 Aligned_cols=183 Identities=16% Similarity=0.255 Sum_probs=100.7
Q ss_pred EEEEEEcCCCcEEEEEecCCeee-----eeeeeec----CCCEEEEeccCC----------------------------e
Q 003327 539 KIYFLDYLTGDIYWTFQTCGEVK-----CQPVVDA----PRQLIWCGSHDH----------------------------N 581 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~-----~~~~~~~----~~~~i~~gs~~g----------------------------~ 581 (829)
.|.+|++ +|+.+|++..+..+. ..+.+.+ ...-|++.+.+| .
T Consensus 156 ~l~aY~l-dG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKL-DGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 6888886 599999987643322 2233322 122356654443 3
Q ss_pred EEEEEcCCCeEEEeeccCC---cc---------------cccceeecCCCEEEEEe---cCCeEEEEEccCCCceEEEee
Q 003327 582 LYALDFRNYRCVYKLPCGG---SI---------------FGSPAIDEVHDVLYVAS---TSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~~~~---~~---------------~~~~~~~~~~~~l~v~t---~~g~l~~~~~~~~~g~~~w~~ 640 (829)
|.++|-.||+.+++..... .. .....++.+.-.++++. ....|.+||.++..-+..|.+
T Consensus 235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ 314 (620)
T 2zuy_A 235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVF 314 (620)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEe
Confidence 7999999999998876521 00 00111222222333332 124588999887333678988
Q ss_pred ccCCcc---e-----eeeeee---ec-CCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccccCCCeEEEEee
Q 003327 641 ELEVPA---F-----ASLCIT---SA-NRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 641 ~~~~~~---~-----~s~~~~---~~-~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~ 706 (829)
....+. + .++.+. .+ ...|++|+ .++|.+|+.+|....+. .+....+.+...+-.+|.+.+
T Consensus 315 ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E 389 (620)
T 2zuy_A 315 DSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHE 389 (620)
T ss_dssp ETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEECTTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECC
T ss_pred cCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEECCCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEec
Confidence 764321 0 112221 11 22455443 36788999999987532 222222222222234555544
Q ss_pred C----CeEEEEeCCCCcEEEEEecC
Q 003327 707 N----GSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 707 ~----g~l~~~d~~tG~~~w~~~~~ 727 (829)
+ .+....|.+||+++|.....
T Consensus 390 ~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 390 DATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCCCCCceEEEECCCCcEEEEecCc
Confidence 3 26788999999999998643
No 401
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=96.51 E-value=0.0042 Score=51.31 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHhcccC-cceeccCCCcc------ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHh
Q 003327 286 KASDLLQVIRKAFGHALM-VEEVLHHDNFF------TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLE 352 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff------~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~ 352 (829)
...++...+++++++.++ ...+.++.+|+ ++|.|||.+++|+..| .++...+...+|+..|+.++..
T Consensus 16 ~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 95 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVS 95 (107)
T ss_dssp CHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHHHH
Confidence 356788899999998886 34688899996 8899999999998765 3677778999999999999987
Q ss_pred hc
Q 003327 353 KK 354 (829)
Q Consensus 353 ~~ 354 (829)
..
T Consensus 96 ~~ 97 (107)
T 3ce7_A 96 ER 97 (107)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 402
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=96.51 E-value=0.56 Score=50.85 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=65.3
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCee---eeeeeeecCCCEEEEe--------------ccCCeEEEEEcCCCeE
Q 003327 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---KCQPVVDAPRQLIWCG--------------SHDHNLYALDFRNYRC 592 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~~i~~g--------------s~~g~l~~~d~~tg~~ 592 (829)
.+..+. ...++.+| ..|+++|.+..+... .-.....++++.|+.. ..+..++.+| .+|++
T Consensus 219 ~l~~g~-G~~i~elD-~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeV 295 (571)
T 3elq_A 219 TFTAVQ-GQHWYEFD-MMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRV 295 (571)
T ss_dssp CEEEEE-BTEEEEEC-TTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCE
T ss_pred CEEEec-CcEEEEEC-CCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCE
Confidence 344443 35699999 689999998765421 1111223344444432 1245789999 99999
Q ss_pred EEeeccC------C-cc--------------------------------------------cccceeecCCCEEEEEecC
Q 003327 593 VYKLPCG------G-SI--------------------------------------------FGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 593 ~w~~~~~------~-~~--------------------------------------------~~~~~~~~~~~~l~v~t~~ 621 (829)
+|..... . .. +.+...+..++.+++.+..
T Consensus 296 v~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~ 375 (571)
T 3elq_A 296 VDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRH 375 (571)
T ss_dssp EEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCc
Confidence 9975431 0 00 1122233435677777776
Q ss_pred CeEEEEEccCCCceEEEeeccC
Q 003327 622 GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
-.|+.+|. + |+.+|.....
T Consensus 376 ~~I~~Id~-t--G~V~W~LGg~ 394 (571)
T 3elq_A 376 QGVVKIGR-D--KQVKWILAPS 394 (571)
T ss_dssp TEEEEEET-T--SCEEEEESCS
T ss_pred cEEEEEcC-C--CcEEEEECCC
Confidence 68888885 5 9999997543
No 403
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=0.27 Score=52.87 Aligned_cols=195 Identities=8% Similarity=0.047 Sum_probs=106.0
Q ss_pred eEEee-CCcEEEEEEeC-CEEEEEEcCCCcEEEEEecCC-e--eeeeeee-------ecCCCEEEEeccCC-------eE
Q 003327 522 AAVLA-DFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCG-E--VKCQPVV-------DAPRQLIWCGSHDH-------NL 582 (829)
Q Consensus 522 ~~~~~-~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~~~-~--~~~~~~~-------~~~~~~i~~gs~~g-------~l 582 (829)
.++.+ +++.||+.... +.|.++|++++.+.-...... . -.....+ +.+++.+|+....+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 34553 35678888764 578999988887764443322 1 1233445 55666788887654 37
Q ss_pred EEEEcCC-CeEEE-----eeccCCcccccceeecCCCEEEEEec-CCeEEEEEcc-------CCCceEEEe---------
Q 003327 583 YALDFRN-YRCVY-----KLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVK-------ALPFHTLWL--------- 639 (829)
Q Consensus 583 ~~~d~~t-g~~~w-----~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~-------~~~g~~~w~--------- 639 (829)
+.++... |+..+ .+...... ..++++++++.||+... ++.|+.+|++ + +.. |+
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t--g~~-~tp~~~~~~g~ 299 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN--GGS-WDPIVKNNPNT 299 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT--TCC-CCCBGGGCTTT
T ss_pred EEEecCCCCceeecccceeeccCCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccC--cee-ecccccccccc
Confidence 8887544 33321 11111111 23456666788888764 5679999987 4 332 11
Q ss_pred ----eccC-CcceeeeeeeecCCEEEEEee-CCeEEEEc---CCCCE----EEEee--cC----C----ceeecCc-c-c
Q 003327 640 ----HELE-VPAFASLCITSANRHVICCLV-DGHVVALD---SSGSI----IWRCR--TG----G----PIFAGPC-T-S 694 (829)
Q Consensus 640 ----~~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d---~~g~~----~w~~~--~~----~----~~~~~~~-~-~ 694 (829)
+... ......+++.++++.+|++.. +..|..++ .++.+ .+.-. .. + ..+..|. . .
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1111 111235667777777788754 56788866 23321 11111 00 0 1122332 1 1
Q ss_pred cc-------CCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003327 695 FA-------LPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 695 ~~-------~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
.+ .++.||++. .++.|..++ .+|.+.
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~ 413 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS 413 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE
T ss_pred EccccccccCCCeEEEEECCCCEEEEEe-CCCCEE
Confidence 22 356888884 467899998 567654
No 404
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.44 E-value=0.94 Score=45.90 Aligned_cols=190 Identities=11% Similarity=0.139 Sum_probs=104.4
Q ss_pred eCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCC---EEEEecc---CCeEEEE--EcCCCeEEEeec------cC
Q 003327 536 YKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQ---LIWCGSH---DHNLYAL--DFRNYRCVYKLP------CG 599 (829)
Q Consensus 536 ~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~---~i~~gs~---~g~l~~~--d~~tg~~~w~~~------~~ 599 (829)
..++|+.||+ +|+++..+..+. .+-..+-+.-.+. .+++... ++.|..| |+.++++.-... ..
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA 126 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred CCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence 3578999997 999988765422 1222222221122 2344333 3566666 667765322111 11
Q ss_pred -Cccccccee--ecCCC--EEEEEecCCeEEEEEccC-----CCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEE
Q 003327 600 -GSIFGSPAI--DEVHD--VLYVASTSGRLTAISVKA-----LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 600 -~~~~~~~~~--~~~~~--~l~v~t~~g~l~~~~~~~-----~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
..... .|+ +...+ ++|+...+|.+..|++.. .+++.+.++...... ..+......+.+|++-.+-+|.
T Consensus 127 ~~~pyG-lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~-EgcvvDd~~g~Lyv~eEd~GIw 204 (355)
T 3amr_A 127 INEVYG-FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT-EGMAADDEYGRLYIAEEDEAIW 204 (355)
T ss_dssp CSSCCC-EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE-EEEEEETTTTEEEEEETTTEEE
T ss_pred CCCeeE-EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc-ceEEEcCCCCeEEEecccceEE
Confidence 11222 233 33234 588888888888877632 124566666665432 3445555679999999998999
Q ss_pred EEc-C-----CCCEEEEeecCC---ceeecCcc-cccCCCeEEEEe-eCCeEEEEeCC-CCcEEEEEecCC
Q 003327 670 ALD-S-----SGSIIWRCRTGG---PIFAGPCT-SFALPSQVLICS-RNGSIYSFEQE-SGNLLWEYSVGD 728 (829)
Q Consensus 670 ~~d-~-----~g~~~w~~~~~~---~~~~~~~~-~~~~~~~i~~~t-~~g~l~~~d~~-tG~~~w~~~~~~ 728 (829)
.|+ . +++++.....+. .+...... ..+..+.+++.+ .++.+..||.+ +.+.+-.+.+..
T Consensus 205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 998 3 244555443221 11111111 112234677777 35689999986 667776666544
No 405
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.38 E-value=0.44 Score=47.86 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=64.1
Q ss_pred CcEEEEECCCCc-EEEEEEcC--CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEe--cCCeee-eee
Q 003327 496 HKFICADAKRSS-VLWEIKLE--GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQ--TCGEVK-CQP 564 (829)
Q Consensus 496 g~l~~~d~~tg~-~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~--~~~~~~-~~~ 564 (829)
..++.||+.+++ ..|+.-.. .......++..++..+++|..+ ..+++||+.+++ |+.. .+.... ...
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~ 155 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGL 155 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceE
Confidence 369999998876 33654321 1111122223343333444432 468999987764 5432 121111 122
Q ss_pred eeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeecc--CCcc-cccceeecCCCEEEEEe-c-----CCeEEEEEc
Q 003327 565 VVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPC--GGSI-FGSPAIDEVHDVLYVAS-T-----SGRLTAISV 629 (829)
Q Consensus 565 ~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~-~~~~~~~~~~~~l~v~t-~-----~g~l~~~~~ 629 (829)
++. ++.||+ |+.+ ..+++||+.++ .|+... .... ..+.+.. ++.||+.. . ...++.||+
T Consensus 156 ~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 156 VVA--SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEE--CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 222 244554 5433 46899999887 455432 1111 1122233 35666543 2 245899998
Q ss_pred cC
Q 003327 630 KA 631 (829)
Q Consensus 630 ~~ 631 (829)
++
T Consensus 230 ~~ 231 (301)
T 2vpj_A 230 RT 231 (301)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 406
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.38 E-value=0.53 Score=48.71 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=35.8
Q ss_pred CeEEEE--ecCCCcEEEEECCCCcEEEEEEc--C--CceeeceEEeeCCcEEEEEEe-C---------CEEEEEEcCCCc
Q 003327 486 DIYLFV--GSHSHKFICADAKRSSVLWEIKL--E--GRIECSAAVLADFSQVVVGCY-K---------GKIYFLDYLTGD 549 (829)
Q Consensus 486 ~~~l~i--gs~~g~l~~~d~~tg~~~w~~~~--~--~~~~~~~~~~~~~~~v~vg~~-d---------g~l~~~d~~tG~ 549 (829)
++.||+ |.....+++||..+....|+.-. + .+.. ..+...++...++|.. + ..+++||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 455555 33345799999976555687432 2 1211 2223334333334544 1 358999987754
Q ss_pred EEEEE
Q 003327 550 IYWTF 554 (829)
Q Consensus 550 ~~w~~ 554 (829)
|+.
T Consensus 98 --W~~ 100 (357)
T 2uvk_A 98 --WVK 100 (357)
T ss_dssp --EEE
T ss_pred --EEE
Confidence 754
No 407
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=96.37 E-value=0.003 Score=49.65 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcccCc--ceeccCCCccc-cCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003327 290 LLQVIRKAFGHALMV--EEVLHHDNFFT-MGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~--~~i~~~~~Ff~-lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+.+++.+++++.++. ..+.++.+|.+ +|.|||..+.|...| .++...+....|+..+..++.+..
T Consensus 3 i~ekv~~il~e~l~~d~~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i~~ed~~~~~Tv~dlv~~I~~~~ 76 (87)
T 2kci_A 3 TLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKL 76 (87)
T ss_dssp SHHHHHHHHHHHTTCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHH
Confidence 356788888888887 45888999997 999999999998765 477788999999999999988654
No 408
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.33 E-value=1.2 Score=49.86 Aligned_cols=178 Identities=12% Similarity=0.040 Sum_probs=95.8
Q ss_pred eCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC
Q 003327 536 YKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD 613 (829)
Q Consensus 536 ~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~ 613 (829)
....|..+|+++.+........+ .......++..++.||... .++.|+.+++..+........+.......+++..++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 46789999987765433333222 1123344555667777664 457888888765433222222212223455665567
Q ss_pred EEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEeecCCceeec
Q 003327 614 VLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTGGPIFAG 690 (829)
Q Consensus 614 ~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~~~~~~~~~~ 690 (829)
.||++.. .+.|.+++++...-+.+-......| ...++.+..+.+|+... .+.|..++.+|...-..-.. +..
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P--~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---~~~ 167 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP--RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN---VGR 167 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---CSS
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCc--ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC---CCC
Confidence 7877654 5678888877421122221122222 45556666788888764 46788887445432221111 111
Q ss_pred C-ccccc-CCCeEEEEe-eCCeEEEEeCCCC
Q 003327 691 P-CTSFA-LPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 691 ~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
| .+..+ .++.||++. ..+.|.++|...+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 1 12222 246777764 4578888887543
No 409
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.33 E-value=1.9 Score=48.24 Aligned_cols=190 Identities=7% Similarity=-0.093 Sum_probs=97.3
Q ss_pred eCCCeEEEEecC-CCcEEEEECCCCcE-EEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEe-cCC
Q 003327 483 KDSDIYLFVGSH-SHKFICADAKRSSV-LWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQ-TCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~-~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~-~~~ 558 (829)
+..++.||+... ++.|+.++...... ......+-......++...++.+|+... .+.|..+++. |+...... ..-
T Consensus 48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l 126 (619)
T 3s94_A 48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQEL 126 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSC
T ss_pred EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCC
Confidence 335677887764 57888888764421 1112222111224455554677777754 5678888854 44332222 111
Q ss_pred eeeeeeeeecCCCEEEEeccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003327 559 EVKCQPVVDAPRQLIWCGSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
.-....++++.++.||+..+. +.|+..+.......-........-...+++.++++||++.. .+.|..++.+ |.
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d---G~ 203 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---GT 203 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS---CC
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC---CC
Confidence 112234566667888887643 57887775432211111111112234566766788887754 4678888876 33
Q ss_pred EEEeecc-CCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEE
Q 003327 636 TLWLHEL-EVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSII 678 (829)
Q Consensus 636 ~~w~~~~-~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~ 678 (829)
....... ...... .+...++.+|+... ++.|..+| .+|+..
T Consensus 204 ~~~~~~~~~~~~P~--gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 204 NRQAVVKGSLPHPF--ALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEC---------CC--CEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred ccEEEEeCCCCCce--EEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 3322211 111111 23334557777754 57799999 677543
No 410
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=96.31 E-value=1 Score=48.75 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce---eeceEEeeCCcEEEEEE--------------eCCEEEEEEcCC
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---ECSAAVLADFSQVVVGC--------------YKGKIYFLDYLT 547 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~---~~~~~~~~~~~~v~vg~--------------~dg~l~~~d~~t 547 (829)
.++.+..+.. ..++.+|. .|+++|++..+... .-.....++|..++... .+..++-+| .|
T Consensus 216 ~nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~t 292 (571)
T 3elq_A 216 PRGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KS 292 (571)
T ss_dssp TTSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TT
T ss_pred CCCCEEEecC-cEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CC
Confidence 3455555543 34899996 69999998876532 11233455665555332 245789999 99
Q ss_pred CcEEEEEe
Q 003327 548 GDIYWTFQ 555 (829)
Q Consensus 548 G~~~w~~~ 555 (829)
|+++|...
T Consensus 293 GeVv~eW~ 300 (571)
T 3elq_A 293 GRVVDVWD 300 (571)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 99998743
No 411
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=96.26 E-value=0.00028 Score=56.94 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcccCc----------ceeccCCCccccCCChHHHHHHHHHc----C--Cc---chhhhcCCCHHHHHHHH
Q 003327 290 LLQVIRKAFGHALMV----------EEVLHHDNFFTMGGNSIAAAHVAHNL----G--ID---MRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~----------~~i~~~~~Ff~lGgdSl~a~~l~~~l----~--~~---~~~~~~~pt~~~la~~l 350 (829)
+...+.+++++.++. +.+.++++|.++|.|||.+++|...| + ++ ...+..++|+..|+.++
T Consensus 5 i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~~i 84 (92)
T 1fh1_A 5 LTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAV 84 (92)
T ss_dssp CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC-----------------CTTTSTHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHHHH
Confidence 345566666666653 26889999999999999999988765 3 45 45678999999999998
Q ss_pred Hhhc
Q 003327 351 LEKK 354 (829)
Q Consensus 351 ~~~~ 354 (829)
.+..
T Consensus 85 ~~~~ 88 (92)
T 1fh1_A 85 RGLL 88 (92)
T ss_dssp HC--
T ss_pred HHHh
Confidence 7654
No 412
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.24 E-value=0.62 Score=46.79 Aligned_cols=126 Identities=10% Similarity=0.119 Sum_probs=63.6
Q ss_pred CcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Ceee-eeee
Q 003327 496 HKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEVK-CQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~~-~~~~ 565 (829)
..+++||+.+.+ |+.-.. ..-....+...++...++|..+ ..+++||+.+.+ |+.... .... ...+
T Consensus 77 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~ 152 (302)
T 2xn4_A 77 RTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVG 152 (302)
T ss_dssp CCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred cceEEECCCCCc--eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEE
Confidence 358999998775 764322 1111122223344444456544 358899987664 654321 1111 1122
Q ss_pred eecCCCEEEE-ecc-------CCeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEe-c-----CCeEEEEE
Q 003327 566 VDAPRQLIWC-GSH-------DHNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTAIS 628 (829)
Q Consensus 566 ~~~~~~~i~~-gs~-------~g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~~~ 628 (829)
+. ++.||+ |+. ...+++||+.+++ |+... ..... .+.+.. ++.||+.. . ...++.||
T Consensus 153 ~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 153 VV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp EE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred EE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEe
Confidence 22 345555 432 2458999998864 55422 11111 122233 36666543 2 23689999
Q ss_pred ccC
Q 003327 629 VKA 631 (829)
Q Consensus 629 ~~~ 631 (829)
+++
T Consensus 227 ~~~ 229 (302)
T 2xn4_A 227 PTT 229 (302)
T ss_dssp TTT
T ss_pred CCC
Confidence 886
No 413
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.23 E-value=0.83 Score=46.57 Aligned_cols=250 Identities=10% Similarity=0.075 Sum_probs=120.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC---
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC--- 557 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--- 557 (829)
.+.+|+..+.|.|+.- . +|-..|+.... ......+.+. + +.+|+.+..+.|+.- .+|-.-|+....
T Consensus 46 ~~~~~~~G~~g~i~~s-~-DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~~~~~g~~g~i~~S--~DgG~tW~~~~~~~~ 119 (327)
T 2xbg_A 46 RHHGWLVGVNATLMET-R-DGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NEGWIVGEPPIMLHT--TDGGQSWSQIPLDPK 119 (327)
T ss_dssp SSCEEEEETTTEEEEE-S-STTSSCEECCCCCSCCCCEEEEEEEE-T-TEEEEEEETTEEEEE--SSTTSSCEECCCCTT
T ss_pred CCcEEEEcCCCeEEEe-C-CCCCCCeECCCCCCCCCccEEEEEec-C-CeEEEEECCCeEEEE--CCCCCCceECccccC
Confidence 3445555566656443 2 33335764321 1122233443 3 567777777877663 344446765321
Q ss_pred --CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003327 558 --GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 558 --~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+.+.. .... ..+.+|+.+.++.|+.-+ ..| .-|+..... .........+ ++.+|+.+..|.++.-+-.
T Consensus 120 ~~~~~~~-i~~~-~~~~~~~~~~~g~v~~S~-DgG-~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~--- 191 (327)
T 2xbg_A 120 LPGSPRL-IKAL-GNGSAEMITNVGAIYRTK-DSG-KNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEP--- 191 (327)
T ss_dssp CSSCEEE-EEEE-ETTEEEEEETTCCEEEES-STT-SSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECT---
T ss_pred CCCCeEE-EEEE-CCCCEEEEeCCccEEEEc-CCC-CCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCC---
Confidence 22222 2222 235677766666665432 223 335543221 1122233333 3556666666767664311
Q ss_pred ceEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC------ceeecCcccccCCCeEEEEe
Q 003327 634 FHTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG------PIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 634 g~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~------~~~~~~~~~~~~~~~i~~~t 705 (829)
|...|+.... ...+....+. .++.+|+.+.+|.++..+.++-..|+..... .+.. +....++.+|+.+
T Consensus 192 gG~tW~~~~~~~~~~~~~~~~~-~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~---v~~~~~~~~~~~g 267 (327)
T 2xbg_A 192 GQTAWEPHNRTTSRRLHNMGFT-PDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD---LAYRTPNEVWLAG 267 (327)
T ss_dssp TCSSCEEEECCSSSCEEEEEEC-TTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE---EEESSSSCEEEEE
T ss_pred CCCceeECCCCCCCccceeEEC-CCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEE---EEecCCCEEEEEe
Confidence 2334543211 1122333333 3567788877777665534444556642211 1111 1123356788888
Q ss_pred eCCeEEEEeCCCCcEEEEEec-C----CccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 706 RNGSIYSFEQESGNLLWEYSV-G----DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.+|.++. ..+.| ..|+... . ..++...+. .++.+|+...+|.|+.++.
T Consensus 268 ~~g~i~~-S~DgG-~tW~~~~~~~~~~~~~~~v~~~-------------~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 268 GAGALLC-SQDGG-QTWQQDVDVKKVPSNFYKILFF-------------SPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp STTCEEE-ESSTT-SSCEECGGGTTSSSCCCEEEEE-------------ETTEEEEECSTTEEEEECC
T ss_pred CCCeEEE-eCCCC-cccEEcCccCCCCCCeEEEEEE-------------CCCceEEEcCCceEEEEcC
Confidence 7887743 33444 4676432 1 111111111 2567888888998887653
No 414
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.22 E-value=1.4 Score=45.51 Aligned_cols=139 Identities=12% Similarity=0.175 Sum_probs=75.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-EEEEe--c-CCeeeeeeeeecC---CCEEEEeccC--------CeEEEE
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDI-YWTFQ--T-CGEVKCQPVVDAP---RQLIWCGSHD--------HNLYAL 585 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-~w~~~--~-~~~~~~~~~~~~~---~~~i~~gs~~--------g~l~~~ 585 (829)
.+++.++ +.+|+...++.|+.+| .+|+. +-.+. . ...-....++.++ ++.||+.... ..|+.+
T Consensus 33 ~ia~~pd-G~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~ 110 (354)
T 3a9g_A 33 SIAPLGG-GRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRG 110 (354)
T ss_dssp EEEEEET-TEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEE
T ss_pred EEEEcCC-CeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEE
Confidence 4556666 4689988889999998 56761 11111 0 1111223345544 6788886542 578888
Q ss_pred EcCCC-------eEEEe-eccC-CcccccceeecCCCEEEEEecC--------------CeEEEEEccCCC-------ce
Q 003327 586 DFRNY-------RCVYK-LPCG-GSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVKALP-------FH 635 (829)
Q Consensus 586 d~~tg-------~~~w~-~~~~-~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~~~~-------g~ 635 (829)
+...+ +.+.. +... ......+.+.+ ++.||++..+ |.|+.++++... ..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 111 RLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 87654 12222 2211 11234455655 5678887532 578888876310 11
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEee
Q 003327 636 TLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
.+|......+ ...++.++.+.+|++..
T Consensus 190 ~i~a~G~rnp--~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 190 PIWSYGHRNP--QGIDWHRASGVMVATEH 216 (354)
T ss_dssp CEEEECCSCC--CEEEECTTTCCEEEEEC
T ss_pred cEEEEccCCc--ceEEEeCCCCCEEEEec
Confidence 4555444332 23445554677888764
No 415
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.13 E-value=0.33 Score=55.27 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=66.5
Q ss_pred EEEEECCCCcEEEEE--EcCCceeeceEEee-CCcEEEEEEeCC-----------EEEEEEcCCCcEEE--EEecCCeee
Q 003327 498 FICADAKRSSVLWEI--KLEGRIECSAAVLA-DFSQVVVGCYKG-----------KIYFLDYLTGDIYW--TFQTCGEVK 561 (829)
Q Consensus 498 l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~-~~~~v~vg~~dg-----------~l~~~d~~tG~~~w--~~~~~~~~~ 561 (829)
+.++|+.+++ |.. +++. .....++.. ++..+++|+.+. .+++||+.+++-.- .........
T Consensus 168 ~~~~dp~~~~--W~~~~~~P~-~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 168 YTAPQPGLGR--WGPTIDLPI-VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCTTSCE--EEEEEECSS-CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred cccCCCCCCe--eeeeccCCC-CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 5567777665 753 2332 122344444 544455555432 58899988876321 111111111
Q ss_pred e-eeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccC--Cc-ccccceeecCCCEEEE-Ee-cC-----CeEEEEEc
Q 003327 562 C-QPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCG--GS-IFGSPAIDEVHDVLYV-AS-TS-----GRLTAISV 629 (829)
Q Consensus 562 ~-~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~--~~-~~~~~~~~~~~~~l~v-~t-~~-----g~l~~~~~ 629 (829)
+ ..++..++..+.+|+. +..+++||+.++ .|..... .. ...+.+... ++.||+ |. .+ ..+.+||+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 2 1233334455555653 457999999987 4654321 11 112223332 244554 44 22 45889998
Q ss_pred cCCCceEEEee
Q 003327 630 KALPFHTLWLH 640 (829)
Q Consensus 630 ~~~~g~~~w~~ 640 (829)
.+ . .|..
T Consensus 322 ~t--~--~W~~ 328 (656)
T 1k3i_A 322 SS--K--TWTS 328 (656)
T ss_dssp TT--T--EEEE
T ss_pred CC--C--ccee
Confidence 86 3 3665
No 416
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.11 E-value=0.027 Score=64.53 Aligned_cols=220 Identities=9% Similarity=0.030 Sum_probs=103.7
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC----CeEEEeeccCCcccccceeecC
Q 003327 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t----g~~~w~~~~~~~~~~~~~~~~~ 611 (829)
.+.|+.+++.+++.......... .....++...+.||+... .+.|+.+++.+ ......+.........++++..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~-p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTT-CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcc-eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35678888776655432222111 223345555677887643 46789998764 1111111111111123445534
Q ss_pred CCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecCCcee
Q 003327 612 HDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTGGPIF 688 (829)
Q Consensus 612 ~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~~~~~ 688 (829)
++.||++. ..+.|.+++++. ................+++.+.++.+|+.... +.|+.++.+|...-.+... . +
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~-l 539 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-N-I 539 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS-S-C
T ss_pred CCcEEEEeccCCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC-C-C
Confidence 57777764 356788888774 22222221111111334455556777776542 6788877444332111111 1 1
Q ss_pred ecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEE
Q 003327 689 AGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 765 (829)
Q Consensus 689 ~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~ 765 (829)
..| .+..+ .++.||+.. ..+.|+.++... ..+..+.........|.. +. ...+.++|+....+.|.+
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~g---la------vd~~~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFS---LA------VFEDKVFWTDIINEAIFS 609 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCC---CE------EETTEEEEECSTTTCEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceE---eE------EECCEEEEEeCCCCeEEE
Confidence 112 12222 246777764 456788888753 322222111000000100 00 011445555555678999
Q ss_pred EEeecC
Q 003327 766 LRVNLD 771 (829)
Q Consensus 766 ~d~~~~ 771 (829)
++..++
T Consensus 610 ~d~~~G 615 (699)
T 1n7d_A 610 ANRLTG 615 (699)
T ss_dssp EETTTE
T ss_pred EEccCC
Confidence 987654
No 417
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=95.98 E-value=0.083 Score=55.12 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=88.6
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCc-----------EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC
Q 003327 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGD-----------IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-----------~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~ 588 (829)
....+++..+.+++|+.+ ++++|+.++.+ ..+....+. +. ...+ ++..++++ .++.|..||..
T Consensus 41 nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE--CCCEEEEE-cCCcEEEEEch
Confidence 355677778888888866 46668765443 224555555 43 3344 56888888 78899999987
Q ss_pred CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeE
Q 003327 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 589 tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i 668 (829)
+-................... ...+.+.+.+|.|+.||+++ +...- . .....+.+.++++ +.+|..+|.+
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~--~p~~av~~~dG~L~v~dl~~--~~~~~---~-~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNV--NNTLVILNSVNDLSALDLRT--KSTKQ---L-AQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp STTCEEEEEECSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEE---E-EESEEEEEECSSE--EEEEETTSCE
T ss_pred hhhccCccceeecceeeEEec--CCCEEEEECCCCEEEEEccC--Ccccc---c-cCCceEEEEcCCc--eEEEEcCCcE
Confidence 654433332222111221112 23488889999999999987 54332 1 1233555666554 7889999999
Q ss_pred EEEc-CCCC
Q 003327 669 VALD-SSGS 676 (829)
Q Consensus 669 ~~~d-~~g~ 676 (829)
..|+ ..+.
T Consensus 185 ~~~~~~~~~ 193 (388)
T 1xip_A 185 QSFAWRNGE 193 (388)
T ss_dssp EEEEEETTE
T ss_pred EEEcCCCcc
Confidence 9999 5544
No 418
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.94 E-value=0.79 Score=47.35 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred CEEEE-ec-cCCeEEEEEcCCCeEEEeeccCCc----ccccceeecCCCEEEEEe-c----------CCeEEEEEccCCC
Q 003327 571 QLIWC-GS-HDHNLYALDFRNYRCVYKLPCGGS----IFGSPAIDEVHDVLYVAS-T----------SGRLTAISVKALP 633 (829)
Q Consensus 571 ~~i~~-gs-~~g~l~~~d~~tg~~~w~~~~~~~----~~~~~~~~~~~~~l~v~t-~----------~g~l~~~~~~~~~ 633 (829)
+.||+ |+ ....+++||+.+....|+.-..-. ...+.+.. ++.||+.. . ...+++||+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~-- 95 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT-- 95 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT--
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC--
Confidence 44554 33 234699999876555676433211 11122233 36666632 2 13588999886
Q ss_pred ceEEEee
Q 003327 634 FHTLWLH 640 (829)
Q Consensus 634 g~~~w~~ 640 (829)
. .|+.
T Consensus 96 ~--~W~~ 100 (357)
T 2uvk_A 96 N--SWVK 100 (357)
T ss_dssp T--EEEE
T ss_pred C--cEEE
Confidence 3 4654
No 419
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.88 E-value=1.8 Score=44.61 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=39.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC---CcEEEEEEeC--------CEEEEEEcCCC
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD---FSQVVVGCYK--------GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~---~~~v~vg~~d--------g~l~~~d~~tG 548 (829)
.++.||++...|.|+.+| .+|+... ...+ ..-....++.++ ++.||+.... +.|++++...+
T Consensus 38 pdG~l~V~e~~g~I~~~d-~~G~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 38 GGGRYLVTERPGRLVLIS-PSGKKLV-ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp ETTEEEEEETTTEEEEEC-SSCEEEE-EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred CCCeEEEEeCCCEEEEEe-CCCceEe-eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC
Confidence 467899999999999998 4576111 1111 111224556555 5789987653 67999987654
No 420
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.80 E-value=0.75 Score=52.24 Aligned_cols=94 Identities=10% Similarity=-0.077 Sum_probs=51.7
Q ss_pred cEEEEECCCCcEEEEE--Ec--C-CceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC--Ce-eeeeeeee
Q 003327 497 KFICADAKRSSVLWEI--KL--E-GRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC--GE-VKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~--~~--~-~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~--~~-~~~~~~~~ 567 (829)
.+.+||+.+++ |+. .. . .....+.++..++..+++|.. +..+++||+.++ .|+.... .. ...+.++.
T Consensus 220 ~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~ 295 (656)
T 1k3i_A 220 LTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATM 295 (656)
T ss_dssp EEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEEC
T ss_pred EEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEe
Confidence 58899998886 431 11 1 111112344455555566653 457999998876 5764321 11 11222333
Q ss_pred cCCCEEEEec-cC-----CeEEEEEcCCCeEEEee
Q 003327 568 APRQLIWCGS-HD-----HNLYALDFRNYRCVYKL 596 (829)
Q Consensus 568 ~~~~~i~~gs-~~-----g~l~~~d~~tg~~~w~~ 596 (829)
.++..+++|+ .+ ..+.+||+.+++ |..
T Consensus 296 ~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~ 328 (656)
T 1k3i_A 296 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTS 328 (656)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEE
T ss_pred cCCeEEEEeCcccCCcccccceEeCCCCCc--cee
Confidence 2345555565 33 468999998875 654
No 421
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.70 E-value=5.4 Score=48.11 Aligned_cols=123 Identities=10% Similarity=0.128 Sum_probs=73.3
Q ss_pred cccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEE--EEEEcCCceeeceEEee------CCcEEEEEEe
Q 003327 465 LWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVLA------DFSQVVVGCY 536 (829)
Q Consensus 465 ~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~------~~~~v~vg~~ 536 (829)
.|..+.++.|..+.+ .+..|.+++ ++.+..+...++++. -+..++..+ ++..+.+ ....+.+|++
T Consensus 507 ~w~~p~~~~I~~As~-----n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~ev-scl~i~~~~~~~~~s~~~aVg~~ 579 (1158)
T 3ei3_A 507 EWKEPQAKNISVASC-----NSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEV-ACLDITPLGDSNGLSPLCAIGLW 579 (1158)
T ss_dssp EECCTTCCCCCEEEE-----CSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCE-EEEECCCCSSSTTCCSEEEEEET
T ss_pred EEECCCCCEEEEEEe-----CCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCce-EEEEeecCCCCcccccEEEEEEC
Confidence 488777666654332 345666665 566777776666432 223344433 2222221 1358999998
Q ss_pred -CCEEEEEEcCCCcEEEEEecCCe--eeeeeeee-cCCCEEEEeccCCeEE--EEEcCCCeEEE
Q 003327 537 -KGKIYFLDYLTGDIYWTFQTCGE--VKCQPVVD-APRQLIWCGSHDHNLY--ALDFRNYRCVY 594 (829)
Q Consensus 537 -dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~-~~~~~i~~gs~~g~l~--~~d~~tg~~~w 594 (829)
|+.+..+++.+-+.++....+.. ..+..+.. ...-++++|..||.+. .+|..+|++.-
T Consensus 580 ~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 580 TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 99999999998888887766542 22221221 1233577888898874 45666777654
No 422
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.55 E-value=2.6 Score=43.38 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=42.5
Q ss_pred ceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC---CcEEEEEEeC------CEEEEE
Q 003327 478 PLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD---FSQVVVGCYK------GKIYFL 543 (829)
Q Consensus 478 p~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~---~~~v~vg~~d------g~l~~~ 543 (829)
|.-+.-+.++.+|++...|.|+.++ +|+..-....+ .......++.++ ++.||+.... +.|+.+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 4333334567799999889999998 56532111111 111234556665 5689987653 679999
Q ss_pred EcCCC
Q 003327 544 DYLTG 548 (829)
Q Consensus 544 d~~tG 548 (829)
+..++
T Consensus 111 ~~~~~ 115 (352)
T 2ism_A 111 RHLGE 115 (352)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 97654
No 423
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.39 E-value=1.7 Score=50.19 Aligned_cols=151 Identities=9% Similarity=0.084 Sum_probs=81.9
Q ss_pred eceEEe-eCCcEEEEEEeC-C----EEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEc
Q 003327 520 CSAAVL-ADFSQVVVGCYK-G----KIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDF 587 (829)
Q Consensus 520 ~~~~~~-~~~~~v~vg~~d-g----~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~ 587 (829)
..+.++ +|++.|+..... | .|+.+|+.+| +.+-. .. ......+.+.+++..|++.+.+ ..|+.++.
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 456788 888876655442 2 4999999999 63210 00 1123456666666666666544 35888888
Q ss_pred CCCe----EEEeeccCCcccccceeecCCCEEEEEec---CCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecCCE
Q 003327 588 RNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPFHT--LWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 588 ~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
.+++ .++... .......+.+++++..|++.+. ...|+.+|+++..++. .-..........++.. ..++.
T Consensus 255 gt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~~g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-HGTSH 332 (751)
T ss_dssp TSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-ETTTE
T ss_pred CCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-eeCCE
Confidence 7763 333321 1223445667777777776653 3468888887621222 1111111111111111 23677
Q ss_pred EEEEeeC-----CeEEEEc-CC
Q 003327 659 VICCLVD-----GHVVALD-SS 674 (829)
Q Consensus 659 l~~~~~~-----g~i~~~d-~~ 674 (829)
+++.+.. ..|+.++ .+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTS
T ss_pred EEEEeCCCCCCCcEEEEEcCCC
Confidence 7776543 2678887 44
No 424
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.29 E-value=2.7 Score=42.02 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=113.3
Q ss_pred CCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC--------------CEEEEEEcCCC
Q 003327 485 SDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK--------------GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d--------------g~l~~~d~~tG 548 (829)
+++.||... .++.|+.++.. |....++... . ...+..+++.||..... ..||.++...+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred eCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 467777764 35679999975 4433333221 1 23455667777776543 47899997665
Q ss_pred cEEEEEecCCeeeeeeeeecCCCEEEEec----cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCe
Q 003327 549 DIYWTFQTCGEVKCQPVVDAPRQLIWCGS----HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~ 623 (829)
+. ......... .+...++.||... .+..||..+..... ..++..+.. +.++.+++.||.... ...
T Consensus 99 ~~-~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 99 GS-TVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp CC-EEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred cc-eEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence 43 223222111 2222456777664 34578999876433 223322211 122444678887765 568
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003327 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
|++.+++. +.. .... ..+.. . .+.++++.++..... ..|+..+.+|.....+... .+ +.+.. .++.|
T Consensus 169 Iy~~~l~g--~~~-~~l~-~~~~~-~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-~~---~~~~~-~g~~I 237 (302)
T 3s25_A 169 LYRYDTAS--QSE-ALFY-DCNCY-K-PVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA-NI---EHYNV-YGSLI 237 (302)
T ss_dssp EEEEETTT--TEE-EEEE-CSCEE-E-EEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-CE---EEEEE-ETTEE
T ss_pred EEEEECCC--CCE-EEEe-CCCcc-c-eeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-Cc---ceEEE-CCCEE
Confidence 99999875 332 2221 12221 2 244678888877654 3688888444433333221 11 11111 25567
Q ss_pred EEEee--CCeEEEEeCCCCcEEEE
Q 003327 702 LICSR--NGSIYSFEQESGNLLWE 723 (829)
Q Consensus 702 ~~~t~--~g~l~~~d~~tG~~~w~ 723 (829)
|..+. .+.|+..+.+ |.....
T Consensus 238 y~~~~~~~~~i~~~~~D-G~~r~~ 260 (302)
T 3s25_A 238 FYQRGGDNPALCVVKND-GTGFKE 260 (302)
T ss_dssp EEEECSSSCEEEEEETT-SCCCEE
T ss_pred EEEECCCCcEEEEEECC-CCccEE
Confidence 76532 4678888864 543333
No 425
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.13 E-value=1.5 Score=50.54 Aligned_cols=132 Identities=9% Similarity=-0.011 Sum_probs=74.3
Q ss_pred cEEEEECCCC-cEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcE--EEEEe-cCCeeeeeeeee
Q 003327 497 KFICADAKRS-SVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDI--YWTFQ-TCGEVKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~--~w~~~-~~~~~~~~~~~~ 567 (829)
.|+.+|+.+| +.+-. .+. ....++.+++|++.|+....+ ..||.+++.++.. .-.+. ........+.++
T Consensus 202 ~l~v~dl~~g~~~l~~-~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 202 TIEFKRISDPSQTIAD-KVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp EEEEEETTCTTCCCCC-CEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEeCCc-ccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 4999999998 63210 011 123467788888777777665 3699999887741 12222 122334556677
Q ss_pred cCCCEEEEecc---CCeEEEEEcCCCe--E--EEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccC
Q 003327 568 APRQLIWCGSH---DHNLYALDFRNYR--C--VYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKA 631 (829)
Q Consensus 568 ~~~~~i~~gs~---~g~l~~~d~~tg~--~--~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~ 631 (829)
+++..|++.+. ...|+.+|..+++ . .-..........++.. ..++.+|+.+.. ..|+.++.++
T Consensus 280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-HGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-ETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-eeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 77777776543 3468889988762 2 1111111111111211 125777776543 3688888764
No 426
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.07 E-value=3 Score=42.86 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=59.8
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-----CeeeeeeeeecC---CCEEEEeccC------CeEEEEE
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-----GEVKCQPVVDAP---RQLIWCGSHD------HNLYALD 586 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~---~~~i~~gs~~------g~l~~~d 586 (829)
.+++.+++ .+|+...++.|+.++ +|+..-..... ..-....++.++ ++.||+.... +.|+.++
T Consensus 35 ~ia~~pdG-~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 35 ALAFLPDG-GMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEECTTS-CEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEcCCC-eEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 44555664 588888889999998 55432111111 111223345544 5788887542 5788998
Q ss_pred cCCCe-----EEEe-ecc--C-CcccccceeecCCCEEEEEecC--------------CeEEEEEcc
Q 003327 587 FRNYR-----CVYK-LPC--G-GSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVK 630 (829)
Q Consensus 587 ~~tg~-----~~w~-~~~--~-~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~ 630 (829)
...++ .+.. +.. . ......+.+++ ++.||++..+ |.|+.++++
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d 177 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPE 177 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence 77542 2222 221 1 12224556665 4689987632 678888765
No 427
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.16 E-value=4.1 Score=41.80 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=71.4
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-c-----CC-eeeeeeeeecC---CCEEEEecc--------CCeE
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-T-----CG-EVKCQPVVDAP---RQLIWCGSH--------DHNL 582 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~-----~~-~~~~~~~~~~~---~~~i~~gs~--------~g~l 582 (829)
..++.+++..+|+....|.|+.++. +|+..-.+. . .+ .-....++.++ ++.||+... ...|
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 4455555433888888888988884 454321111 0 00 00122334433 577887632 2357
Q ss_pred EEEEcCCC--e-----EEEee-cc---CCcccccceeecCCCEEEEEecC--------------CeEEEEEccCCC----
Q 003327 583 YALDFRNY--R-----CVYKL-PC---GGSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVKALP---- 633 (829)
Q Consensus 583 ~~~d~~tg--~-----~~w~~-~~---~~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~~~~---- 633 (829)
..++...+ + .++.. .. .......+.+.+ ++.||++..+ |.|+.++++...
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 77765433 1 12211 11 112223455655 5689998643 578999876310
Q ss_pred --------ceEEEeeccCCcceeeeeeeecCCEEEEEeeC
Q 003327 634 --------FHTLWLHELEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 634 --------g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
...+|......+ ...++.+..+.+|++...
T Consensus 180 pf~~~~~~~~~i~a~G~rnp--~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGIRNP--QGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TTTTSTTSCTTEEEECCSEE--EEEEEETTTTEEEEEEEC
T ss_pred CCcCCCCCCccEEEEcCcCc--cceEEECCCCCEEEEecC
Confidence 123444333222 234455446788887654
No 428
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.69 E-value=16 Score=44.07 Aligned_cols=140 Identities=20% Similarity=0.126 Sum_probs=80.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE--EEEecCCeeeeeeeeec-----C
Q 003327 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY--WTFQTCGEVKCQPVVDA-----P 569 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~-----~ 569 (829)
.|..++...++.+..+..+.......+... +..|++.+ ++.++.+...+|++. -+.+...++.+..+... .
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n-~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN-SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC-SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC-CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 377777765555533343332111222223 35677775 778888776666532 22334445443322211 1
Q ss_pred CCEEEEecc-CCeEEEEEcCCCeEEEeeccCCc-ccccceee--cCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003327 570 RQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGS-IFGSPAID--EVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 570 ~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+.+|.+ |+.+..++..+-+.++....+.. ...+.++. +..-++++|..+|.+..+..+..+|+..-
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 367888997 89999999998888887766432 11222222 11236788999998877766544465543
No 429
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.73 E-value=8.7 Score=38.30 Aligned_cols=253 Identities=12% Similarity=0.156 Sum_probs=127.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 575 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 575 (829)
..|..+|+.++...-+.+.... +++..+....+..-. ...|..+|.++.+.+..+.....+....-+++ ..|-.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad---sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~--~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--SEEEE
T ss_pred CEEEEEECCCCCCccccccccc---eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC--CeEEE
Confidence 3688899888765444444433 456666655555554 77899999999988888887776655443433 44444
Q ss_pred eccCCeEEEEEcCC-CeEEEeeccCCccccc----ceeecCCCEEE-EEe--cC----CeEEEEEccCCCceEEEeeccC
Q 003327 576 GSHDHNLYALDFRN-YRCVYKLPCGGSIFGS----PAIDEVHDVLY-VAS--TS----GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 576 gs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~----~~~~~~~~~l~-v~t--~~----g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
-+ +..+|-|+... -.+...++.+....+. -..+.+...+. +|- .+ |.+-.|..+. + ...-.+.+
T Consensus 123 VT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~-~sQ~ieGh 198 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--K-VSQPIEGH 198 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--T-EEEEECCS
T ss_pred Ec-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc--c-ccceeeee
Confidence 33 34799998764 2454444443332211 12233233222 221 12 2333444332 1 11111111
Q ss_pred Ccceeeeeeee--cCCEEEE-Eee---CCeEEEEc--C--CCCEEEEeecCCceeecC-------c--ccccCCCeEEEE
Q 003327 644 VPAFASLCITS--ANRHVIC-CLV---DGHVVALD--S--SGSIIWRCRTGGPIFAGP-------C--TSFALPSQVLIC 704 (829)
Q Consensus 644 ~~~~~s~~~~~--~~~~l~~-~~~---~g~i~~~d--~--~g~~~w~~~~~~~~~~~~-------~--~~~~~~~~i~~~ 704 (829)
...|.+..+.. ....+++ +.. .+.+.+++ . .|...++.+. ..++..| + -.....|.||+-
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~-vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEE-EEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccccc-ceeeCCccccCCceEEEEecccCCEEEEE
Confidence 11121111110 0112222 221 14566665 2 2332221110 0011111 0 113356889999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 705 SRNGSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|.-|.|+.||.+||..+..-...... ..+..... .+|.+.+. ..|.|.....+..
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~-----------~~Gi~~Vn-r~GqVl~v~v~~~ 333 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA-----------TAGIIGVN-RKGQVLSVCVEEE 333 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGG-----------GTEEEEEE-TTCEEEEEEECTT
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCC-----------CCcEEEEc-CCCEEEEEEECcc
Confidence 99999999999999999876654432 22211111 14554444 7788877766643
No 430
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.43 E-value=5.4 Score=45.39 Aligned_cols=28 Identities=4% Similarity=-0.060 Sum_probs=22.4
Q ss_pred HHHcCCcchhhhcCCCHHHHHHHHHhhc
Q 003327 327 AHNLGIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 327 ~~~l~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+..+.++..++.+|++...+..+.+..
T Consensus 273 ~~~~g~~l~~~~~~~~~~~~~~~~~~~G 300 (695)
T 2zwa_A 273 FKRNDSPLQSVLKYNTIESQVQRFNKLG 300 (695)
T ss_dssp HHHTTCCCCGGGTCCSHHHHHHHHHHTT
T ss_pred HHHcCCCCCccccCCCHHHHHHHHHHCC
Confidence 4456788999999999999988887653
No 431
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=92.33 E-value=14 Score=39.80 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=93.3
Q ss_pred cccccccccccccc-----ccceEEeeCC--CeEEEEecCCCc----------------------------EEEEECCCC
Q 003327 462 IQELWKVHMESCVD-----ASPLVVLKDS--DIYLFVGSHSHK----------------------------FICADAKRS 506 (829)
Q Consensus 462 ~~~~W~~~~~~~~~-----~sp~v~~~d~--~~~l~igs~~g~----------------------------l~~~d~~tg 506 (829)
.+.+|+.+++..+. .++.|.--|. ..-|++.+.+|. |.++|-.||
T Consensus 164 G~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG 243 (620)
T 2zuy_A 164 GTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETG 243 (620)
T ss_dssp SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTC
T ss_pred CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCc
Confidence 56779888765443 2444442222 336777666543 689999999
Q ss_pred cEEEEEEcC-Ccee--------------eceEEe-eCCc--EEEEEE-e--CCEEEEEEcCCCc--EEEEEecCCe----
Q 003327 507 SVLWEIKLE-GRIE--------------CSAAVL-ADFS--QVVVGC-Y--KGKIYFLDYLTGD--IYWTFQTCGE---- 559 (829)
Q Consensus 507 ~~~w~~~~~-~~~~--------------~~~~~~-~~~~--~v~vg~-~--dg~l~~~d~~tG~--~~w~~~~~~~---- 559 (829)
+.+++.+.. .+-. ..+.+. -++. .++++- + ...|.+||..+++ .+|.+.....
T Consensus 244 ~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~ 323 (620)
T 2zuy_A 244 EALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEA 323 (620)
T ss_dssp CEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGG
T ss_pred ceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccc
Confidence 999987752 1100 011111 1222 233321 1 2468899988885 5899876421
Q ss_pred ----eeeeeeeec----CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecC-CC-EEEEEecC----CeE
Q 003327 560 ----VKCQPVVDA----PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEV-HD-VLYVASTS----GRL 624 (829)
Q Consensus 560 ----~~~~~~~~~----~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~-~~-~l~v~t~~----g~l 624 (829)
-...+.+.+ ...-|++|+ .++| .+|+.+|....+ +.....--++++ .+ .+|....+ ...
T Consensus 324 ~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~ 397 (620)
T 2zuy_A 324 YAGQGNHSLSVADVDGDGKDEIIYGA-----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGL 397 (620)
T ss_dssp GTTCCCSSCEEECCSSSSSCEEEETT-----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSE
T ss_pred cccccCcCceEEecCCCCceeEEEee-----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCce
Confidence 011222221 123355554 3566 789999987652 111111111221 12 45554432 246
Q ss_pred EEEEccCCCceEEEeeccC
Q 003327 625 TAISVKALPFHTLWLHELE 643 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~ 643 (829)
..+|..+ |+.+|.....
T Consensus 398 ~~~DA~t--G~vlw~~~~~ 414 (620)
T 2zuy_A 398 SLRDAGT--GEILWGVHAG 414 (620)
T ss_dssp EEEETTT--CCEEEEECCS
T ss_pred EEEECCC--CcEEEEecCc
Confidence 6788887 9999998653
No 432
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.87 E-value=0.77 Score=42.89 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=39.8
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCC-CeEEEeec---c---CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003327 565 VVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLP---C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~---~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
.+.+ ++.||.. .+|.||..++.+ +...|.-. . +-..+....++. ++.||+. .+|.||.++.-+ ++..-
T Consensus 47 af~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav-~dG~iyr~~pP~-~~~~~ 121 (236)
T 1tl2_A 47 FLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV-SKDKLYKASPPQ-SDTDN 121 (236)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE-ETTEEEEESCCC-STTCC
T ss_pred EECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe-CCCEEEEeCCCc-CCCCc
Confidence 3443 5667766 667777777644 22222111 0 111234455554 6778888 569999998643 25556
Q ss_pred Eeec
Q 003327 638 WLHE 641 (829)
Q Consensus 638 w~~~ 641 (829)
|...
T Consensus 122 Wl~~ 125 (236)
T 1tl2_A 122 WIAR 125 (236)
T ss_dssp HHHH
T ss_pred eecc
Confidence 6543
No 433
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.70 E-value=18 Score=37.73 Aligned_cols=210 Identities=11% Similarity=0.152 Sum_probs=107.2
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeeeee----eecC
Q 003327 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPV----VDAP 569 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~----~~~~ 569 (829)
...|..||+.+.+.+-.+.....+..-.-+++. .+-.-+ +..||.|+... -.+..-|+-+.....+.+ .+.+
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC
Confidence 467999999988877777766654332233322 343333 56799999753 234444544332211111 1222
Q ss_pred CCE-EEEe--ccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCC--CEEEEEec----CCeEEEEEccCC-Cce
Q 003327 570 RQL-IWCG--SHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH--DVLYVAST----SGRLTAISVKAL-PFH 635 (829)
Q Consensus 570 ~~~-i~~g--s~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~--~~l~v~t~----~g~l~~~~~~~~-~g~ 635 (829)
.+. +++| ..+ |.+..|+.+.+. -..++.+...+.+..++++. ..|++-.. .+.+.++++... .|.
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~ 240 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC
T ss_pred CCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC
Confidence 222 2222 112 334444433321 11122222222222222211 12333222 267888887542 122
Q ss_pred EEE---eecc--C----CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe
Q 003327 636 TLW---LHEL--E----VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 636 ~~w---~~~~--~----~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t 705 (829)
... ..+. . .....+..++...+.+|+-|..|.++.|| .+|..++...... +.+++++
T Consensus 241 ~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~-------------~~iF~t~ 307 (494)
T 1bpo_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-------------ETIFVTA 307 (494)
T ss_dssp CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-------------SCEEEEE
T ss_pred CCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC-------------CceEEec
Confidence 111 1111 1 11224556677889999999999999999 9999988765332 2344443
Q ss_pred e---CCeEEEEeCCCCcEEE
Q 003327 706 R---NGSIYSFEQESGNLLW 722 (829)
Q Consensus 706 ~---~g~l~~~d~~tG~~~w 722 (829)
. .+++.+++ +.|+++.
T Consensus 308 ~~~~~~Gi~~Vn-r~GqVl~ 326 (494)
T 1bpo_A 308 PHEATAGIIGVN-RKGQVLS 326 (494)
T ss_dssp EETTTTEEEEEE-TTCEEEE
T ss_pred ccCCCCcEEEEc-cCceEEE
Confidence 2 46677777 5576654
No 434
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.50 E-value=2.3 Score=39.77 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=42.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCee------eeeeeeecCCCEEEEeccCCeEEEEEcC-CCeE
Q 003327 521 SAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEV------KCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRC 592 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~------~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~ 592 (829)
...+.++ +.||+. .+|.||..+..+ +...|.- ....+ ....++.+.++.||+. .||.||.+++. ++.-
T Consensus 45 ~laf~P~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~ 120 (236)
T 1tl2_A 45 FLFLSPG-GELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD 120 (236)
T ss_dssp EEEECTT-SCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC
T ss_pred eEEECCC-ccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC
Confidence 4456664 568877 788999999755 3334421 11111 1133455567888988 56999999863 3444
Q ss_pred EE
Q 003327 593 VY 594 (829)
Q Consensus 593 ~w 594 (829)
-|
T Consensus 121 ~W 122 (236)
T 1tl2_A 121 NW 122 (236)
T ss_dssp CH
T ss_pred ce
Confidence 44
No 435
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.35 E-value=16 Score=41.46 Aligned_cols=130 Identities=11% Similarity=0.110 Sum_probs=67.0
Q ss_pred CcEEEEECCCCcEEEEEEc-C-------C-ceeeceEEee-CCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-
Q 003327 496 HKFICADAKRSSVLWEIKL-E-------G-RIECSAAVLA-DFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG- 558 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~-~-------~-~~~~~~~~~~-~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~- 558 (829)
..+++||+.+++ |+.-. . . +...+.+... ++..+++|+.+ +.+++||..+. .|+.-..-
T Consensus 412 ~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~~~p 487 (695)
T 2zwa_A 412 NEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIKSLS 487 (695)
T ss_dssp CCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECCCCS
T ss_pred CcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECCCCC
Confidence 458999998876 76432 1 1 1111223332 44444455432 35889998765 57643211
Q ss_pred -eee-eeeeeecCCCEEEEeccCC--eEEEEEcCCCeEEEeeccC-C----cc-ccc-ceeecCCCEEEEEe-c------
Q 003327 559 -EVK-CQPVVDAPRQLIWCGSHDH--NLYALDFRNYRCVYKLPCG-G----SI-FGS-PAIDEVHDVLYVAS-T------ 620 (829)
Q Consensus 559 -~~~-~~~~~~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~~~~-~----~~-~~~-~~~~~~~~~l~v~t-~------ 620 (829)
... .+.++..++..+++|+.++ .+++||+.+++ |+.... + .. ..+ .++..+.+.||+.+ .
T Consensus 488 ~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~ 565 (695)
T 2zwa_A 488 HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT 565 (695)
T ss_dssp BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC
T ss_pred CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe
Confidence 111 1122212344455565443 69999998865 765332 1 11 112 33344336666643 2
Q ss_pred -CCeEEEEEccC
Q 003327 621 -SGRLTAISVKA 631 (829)
Q Consensus 621 -~g~l~~~~~~~ 631 (829)
...+++||+.+
T Consensus 566 ~~~~v~~yd~~~ 577 (695)
T 2zwa_A 566 VSDKAIIFKYDA 577 (695)
T ss_dssp BCCEEEEEEECT
T ss_pred eeCcEEEEEccC
Confidence 14589999887
No 436
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.03 E-value=18 Score=36.85 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=39.4
Q ss_pred cceEEeeCCCeE-EEEecCCCcEEEEECCCCcEEEEEE-cC------CceeeceEEeeC---CcEEEEEEe--------C
Q 003327 477 SPLVVLKDSDIY-LFVGSHSHKFICADAKRSSVLWEIK-LE------GRIECSAAVLAD---FSQVVVGCY--------K 537 (829)
Q Consensus 477 sp~v~~~d~~~~-l~igs~~g~l~~~d~~tg~~~w~~~-~~------~~~~~~~~~~~~---~~~v~vg~~--------d 537 (829)
.|.-+.-+.++. ||++...|.|+.++. +|+..-.+. .+ ..-....++.++ ++.||+... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 344443445677 999999999999986 454321010 11 111123455553 568888753 2
Q ss_pred CEEEEEEcCC
Q 003327 538 GKIYFLDYLT 547 (829)
Q Consensus 538 g~l~~~d~~t 547 (829)
..|++++...
T Consensus 98 ~~v~r~~~~~ 107 (353)
T 2g8s_A 98 TAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEECT
T ss_pred eEEEEEEECC
Confidence 3688887643
No 437
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.46 E-value=22 Score=35.71 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=90.6
Q ss_pred CeEEEEecCCCcEEEEECCC---------CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC---------C
Q 003327 486 DIYLFVGSHSHKFICADAKR---------SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL---------T 547 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~---------t 547 (829)
...+++-|++|.|....+.+ |..--.++-++.+. ..........+++-+..|.+|.+... .
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~-~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVA-HFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEE-EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEE-EEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 44567778889888776432 11100111122222 23333444566666777888877632 1
Q ss_pred CcEEEE---EecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCC-------CeEEEeeccCCcccccceeecCCCEE
Q 003327 548 GDIYWT---FQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRN-------YRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 548 G~~~w~---~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~t-------g~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
|..+-. +..+..+.....+.+ +...+++.|.+|.+....... |...-++.-+..+.. ......++.|
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~-~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVG-AVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEE-EEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEE-EEEecCCCEE
Confidence 222111 111233333333332 356788888999888877543 222112221222222 2233345778
Q ss_pred EEEecCCeEEEEEcc--CC-------CceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 616 YVASTSGRLTAISVK--AL-------PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~--~~-------~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
++.|..|.++.+... .- .|...-....... ..+......+..+++.+..|.+....
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~-Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR-LLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC-EEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE-EEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 889999999998876 21 1211111111111 22223333455777888777666543
No 438
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.42 E-value=22 Score=35.53 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=110.3
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeeeee
Q 003327 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~ 565 (829)
..|.+-+ ...|..||+.+.+.+-.+.....+..-.-++ + ..+-.-+ +..+|.|+... -.+..-++-+.....+.+
T Consensus 79 ~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis-~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QI 154 (365)
T 2xzh_A 79 KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-L-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQI 154 (365)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS-S-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEE
T ss_pred cEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC-C-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceE
Confidence 3333333 4679999999988777777766543322232 2 2343333 56799998753 345544544332211111
Q ss_pred ----eecCCCE-EEEec--cC----CeEEEEEcCCCeEEEeeccCCcccccceeecC--CCEEEEEec----CCeEEEEE
Q 003327 566 ----VDAPRQL-IWCGS--HD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV--HDVLYVAST----SGRLTAIS 628 (829)
Q Consensus 566 ----~~~~~~~-i~~gs--~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~----~g~l~~~~ 628 (829)
.+.+.+. +++|- .+ |.+..|..+.+. -..++.+...+....++++ ...|++-.. .+.|.+++
T Consensus 155 InY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiE 233 (365)
T 2xzh_A 155 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 233 (365)
T ss_dssp EEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 1222222 22231 12 344444444322 1112222222222222211 123433221 25788888
Q ss_pred ccCC-CceEEEe---ec--cC----CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003327 629 VKAL-PFHTLWL---HE--LE----VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 629 ~~~~-~g~~~w~---~~--~~----~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
+... .|..... .+ .+ .....+..++...+.+|+-|..|.++.|| .+|..++......
T Consensus 234 i~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~------------ 301 (365)
T 2xzh_A 234 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG------------ 301 (365)
T ss_dssp CSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS------------
T ss_pred cCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCC------------
Confidence 7543 1322111 11 11 11224556677789999999999999999 9999988765432
Q ss_pred CCeEEEEe---eCCeEEEEeCCCCcEEE
Q 003327 698 PSQVLICS---RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 698 ~~~i~~~t---~~g~l~~~d~~tG~~~w 722 (829)
+.+++++ ..+++.+++ +.|+++.
T Consensus 302 -d~iF~ta~~~~~~Gi~~Vn-r~GqVl~ 327 (365)
T 2xzh_A 302 -ETIFVTAPHEATAGIIGVN-RKGQVLS 327 (365)
T ss_dssp -SCEEEEEEEGGGTEEEEEE-TTCEEEE
T ss_pred -CceEEecccCCCCcEEEEc-CCCEEEE
Confidence 2344443 236677777 5577654
No 439
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=86.59 E-value=33 Score=35.72 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=126.2
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 575 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 575 (829)
..|..+|+.++...-+.+.... +++..+..+.+..-. ...|..||.++...+..+.....+....-+++ ..|-.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEEEE
T ss_pred CeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--CeEEE
Confidence 3688899988765444444433 456666655555544 77899999999988888887776655544443 44444
Q ss_pred eccCCeEEEEEcCC-CeEEEeeccCCccccc----ceeecCCCEEE-EE--ecC----CeEEEEEccCCCceEEEeeccC
Q 003327 576 GSHDHNLYALDFRN-YRCVYKLPCGGSIFGS----PAIDEVHDVLY-VA--STS----GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 576 gs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~----~~~~~~~~~l~-v~--t~~----g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
-+ +..+|-|+... -.+...++.+....+. -..+.+...+. +| ..+ |.+-.|..+. +...-.+.+
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGh 197 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGH 197 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCS
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cccchheee
Confidence 43 34799999763 2455445444332211 12233233322 21 112 2233333332 111111111
Q ss_pred Ccceeeeeeeec--CCEEEEEee----CCeEEEEc--C--CCCEEEEeecCCceeecC-------c--ccccCCCeEEEE
Q 003327 644 VPAFASLCITSA--NRHVICCLV----DGHVVALD--S--SGSIIWRCRTGGPIFAGP-------C--TSFALPSQVLIC 704 (829)
Q Consensus 644 ~~~~~s~~~~~~--~~~l~~~~~----~g~i~~~d--~--~g~~~w~~~~~~~~~~~~-------~--~~~~~~~~i~~~ 704 (829)
...|.+..+... ...+++-.. .+.+.+++ . +|...+..+. ..++..| + -.....|.+|+-
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~-vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEE-EECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcccee-eeeeCCcccccCceeEEEecccCCEEEEE
Confidence 111221111100 012222211 14555555 1 1222111100 0011111 0 112346889999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003327 705 SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|.-|.|+.||..||..++.-.............. ..+|.+.+. ..|.|.....+..
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~----------~~~Gi~~Vn-r~GqVl~v~v~e~ 332 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE----------ATAGIIGVN-RKGQVLSVCVEEE 332 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET----------TTTEEEEEE-TTCEEEEEEECTT
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccC----------CCCcEEEEc-cCceEEEEEEccc
Confidence 9999999999999999987665443221111111 124554444 7888877776644
No 440
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=85.31 E-value=9 Score=40.83 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred cceEEeeCCCeEEEEecCCC-cEEEEECCCCcEEEEEEcCCce--------eeceEEeeC---CcEEEEEEe--------
Q 003327 477 SPLVVLKDSDIYLFVGSHSH-KFICADAKRSSVLWEIKLEGRI--------ECSAAVLAD---FSQVVVGCY-------- 536 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~~~~--------~~~~~~~~~---~~~v~vg~~-------- 536 (829)
.|.-+.-+.+++||++...+ +|+.++..+|+..-...+.... ....++.++ ++.||+...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 44444344678899998876 6999987777654222222211 113456554 678888764
Q ss_pred -----CCEEEEEEcCC
Q 003327 537 -----KGKIYFLDYLT 547 (829)
Q Consensus 537 -----dg~l~~~d~~t 547 (829)
...|++++...
T Consensus 108 ~~~~~~~~v~r~~~~~ 123 (454)
T 1cru_A 108 KELPNQTIIRRYTYNK 123 (454)
T ss_dssp CCSCEEEEEEEEEEET
T ss_pred cccccccEEEEEEECC
Confidence 24688887543
No 441
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=84.63 E-value=7.1 Score=32.14 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee
Q 003327 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 567 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 567 (829)
..+.-..||.+..++...++..|......... +....-..+|.++.+| .+++.+|...+....
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~---------~~~l~l~~dGNLVl~d-~~~~~iW~S~t~~~~------- 88 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQ---------HCFMRLGHSGELDITD-DRLNTVFVSNTVGQE------- 88 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTTSCS---------SCEEEECTTSCEEEEC-TTSCEEEECSCCCSS-------
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCcccCCc---------CEEEEEeCCCcEEEEC-CCCCEEEECCCcCCC-------
Confidence 33344677888888865588999854432110 1111222367777777 467889975542211
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003327 568 APRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.....+-..||.+..++ ..+|..
T Consensus 89 --~~~~~~L~~dGnlvly~----~~~W~s 111 (113)
T 3mez_B 89 --GDYVLILQINGQAVVYG----PAVWST 111 (113)
T ss_dssp --SCCEEEECTTSCEEEEC----SEEEES
T ss_pred --CCEEEEEcCCceEEEec----CCEecC
Confidence 11223334567777776 477753
No 442
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.71 E-value=46 Score=34.11 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred CEEEEEEcCCC--cEEEEEecCCee------eeeeeee-c------CCCEEEEecc-CCeEEEEEcCCCeEE
Q 003327 538 GKIYFLDYLTG--DIYWTFQTCGEV------KCQPVVD-A------PRQLIWCGSH-DHNLYALDFRNYRCV 593 (829)
Q Consensus 538 g~l~~~d~~tG--~~~w~~~~~~~~------~~~~~~~-~------~~~~i~~gs~-~g~l~~~d~~tg~~~ 593 (829)
-.|.+||++|+ +++.++..+..+ .....++ . +++.+|+... .+.|..+|.++|+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw 194 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW 194 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE
Confidence 36889999999 999998875432 2333444 1 2578888753 578999999998653
No 443
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.29 E-value=58 Score=39.62 Aligned_cols=87 Identities=8% Similarity=0.053 Sum_probs=51.2
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE
Q 003327 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 575 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 575 (829)
..|..+|+.++...-+.+.... +++..+..+.+..-. ...|..||.++...+..+.....+....-+++ ..|-.
T Consensus 48 ~~vvIidl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~--~~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVAL 121 (1630)
T ss_pred ceEEEEECCCCCCcccccccch---hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC--CeeEE
Confidence 3688899888664433322221 445555544444443 67799999888877777666665544433332 33333
Q ss_pred eccCCeEEEEEcCC
Q 003327 576 GSHDHNLYALDFRN 589 (829)
Q Consensus 576 gs~~g~l~~~d~~t 589 (829)
-+ +..||-|+...
T Consensus 122 VT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEG 134 (1630)
T ss_pred Ec-CCeEEEeccCC
Confidence 33 34699998753
No 444
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.86 E-value=23 Score=37.67 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=17.7
Q ss_pred ceEEeeCCcEEEEEEeCC-EEEEEEcCCCcE
Q 003327 521 SAAVLADFSQVVVGCYKG-KIYFLDYLTGDI 550 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg-~l~~~d~~tG~~ 550 (829)
.+++.+++ .+|++...+ .|++++..+|+.
T Consensus 31 ~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 31 ALLWGPDN-QIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred EEEEcCCC-cEEEEEcCCCEEEEEECCCCcE
Confidence 34444453 577776665 588887666654
No 445
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A
Probab=80.37 E-value=0.37 Score=46.50 Aligned_cols=63 Identities=6% Similarity=-0.110 Sum_probs=48.2
Q ss_pred cccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCcc------------------CCCCCC-eeeeccccc
Q 003327 373 EDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN------------------LSSVPM-SCSFSRCNK 433 (829)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~------------------~~~~~~-~~s~~~~~~ 433 (829)
+.+++|+|+..++...|..+...|..+..+|.+.-++|+.+..+.. ..|+.| |+|+||.++
T Consensus 13 ~~~lv~lhg~g~~~~~~~~~~~~L~~~~~vi~~Dl~GhG~S~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvGhSmGG~iA 92 (242)
T 2k2q_B 13 KTQLICFPFAGGYSASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMIT 92 (242)
T ss_dssp CCEEESSCCCCHHHHHHHHHHHHHCCSCCCEEEECCSSCCSCCCTTTHHHHHHHHTTTTCCCCCCSSCEEECCSSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCCcCCHHHHHHHHHHHHHhhcCCCEEEEeCCHhHHHH
Confidence 3569999999999999999999998877887777777644322111 137888 999999988
Q ss_pred ee
Q 003327 434 VM 435 (829)
Q Consensus 434 ~~ 435 (829)
+.
T Consensus 93 ~~ 94 (242)
T 2k2q_B 93 FR 94 (242)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 446
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.25 E-value=60 Score=33.24 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=41.1
Q ss_pred cEEEEECCCC--cEEEEEEcCCc------eeeceEEe-e------CCcEEEEEEe-CCEEEEEEcCCCcEEEEEe
Q 003327 497 KFICADAKRS--SVLWEIKLEGR------IECSAAVL-A------DFSQVVVGCY-KGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 497 ~l~~~d~~tg--~~~w~~~~~~~------~~~~~~~~-~------~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~ 555 (829)
+|.+||++|+ +++.++.++.. ......+. . +++.+|+... ...|+.+|..+|+. |++.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEc
Confidence 6889999999 99988887643 22334444 1 1468888864 57899999988876 4443
No 447
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.62 E-value=61 Score=32.44 Aligned_cols=101 Identities=9% Similarity=0.035 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCEEEEEEcCC-------CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC--C---------
Q 003327 528 FSQVVVGCYKGKIYFLDYLT-------GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR--N--------- 589 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~t-------G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~--t--------- 589 (829)
+..+++.+.+|.+......+ |...-.+.-++.+..... ......|++.+..|.++.+... .
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~-~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVL-CSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEE-ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEE-ecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 56788888888888776433 222112222334443333 3345678888888999988866 2
Q ss_pred CeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003327 590 YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 590 g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
|...-.+..+..+.+...+. ++..+++.|..|.+-...+.
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp CEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGG
T ss_pred CeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHH
Confidence 11110111111222222222 34578888888876666543
No 448
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=72.45 E-value=50 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.3
Q ss_pred eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003327 648 ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
.+..++...+.+|+-|..|.++.+| .+|..++....
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 4455667789999999999999999 99998876543
No 449
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.12 E-value=81 Score=31.28 Aligned_cols=185 Identities=8% Similarity=0.014 Sum_probs=93.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE---------EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE-EE-
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVL---------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WT- 553 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~---------w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~-w~- 553 (829)
++..+++.|.+|.+......+-+.. -.+.-++.+. ........+.+++.+..|.+|.+....=... |+
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~-~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIV-IALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE-EEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEE-EEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 3556777899999988876432110 0111222222 3334444557777788888888875321111 11
Q ss_pred ----------EecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCE
Q 003327 554 ----------FQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 554 ----------~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
+..++.+.....+.+ .+..+++.+.+|.++..... .|...-++..+..+...... ++++.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~-~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV-FKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEE-CTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEe-CCCCE
Confidence 111223333322221 35667888888988888763 23332222222233333333 33567
Q ss_pred EEEEecCCeEEEEEccCC-------CceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003327 615 LYVASTSGRLTAISVKAL-------PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~-------~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+++.|.+|.+..+..+.- .|...-+...+ ....+......+..+++.+.+|....++
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-DLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-CCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-CEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 888999999988886530 12121111111 1112222333445666777777666655
No 450
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=71.31 E-value=90 Score=31.48 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=55.5
Q ss_pred ceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC------CeeeeeeeeecC---CCEEEEe---ccCCeEEEEEc
Q 003327 521 SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC------GEVKCQPVVDAP---RQLIWCG---SHDHNLYALDF 587 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~------~~~~~~~~~~~~---~~~i~~g---s~~g~l~~~d~ 587 (829)
..++.+++ .+|+... .|.|+.++..+|+..-..... ..-....++.++ ++.||+. ..++.|..+..
T Consensus 36 ~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~ 114 (347)
T 3das_A 36 GLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLY 114 (347)
T ss_dssp EEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEB
T ss_pred EEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEe
Confidence 34555554 5777776 788888887666643211111 111122334332 4677764 13456777765
Q ss_pred CCC----------eEEEe-ecc-CCcccccceeecCCCEEEEEec--------------CCeEEEEEcc
Q 003327 588 RNY----------RCVYK-LPC-GGSIFGSPAIDEVHDVLYVAST--------------SGRLTAISVK 630 (829)
Q Consensus 588 ~tg----------~~~w~-~~~-~~~~~~~~~~~~~~~~l~v~t~--------------~g~l~~~~~~ 630 (829)
..+ +.++. ... .......+.+.. ++.||++.. .|.|+.++++
T Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 441 23332 111 112334455555 467888753 3667777665
No 451
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A
Probab=69.86 E-value=1.3 Score=43.95 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=44.0
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCC--------------CCCccCCCCCC-eeeecccccee
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKD--------------GLPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~--------------~~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
.+++++|+|+..++...|..+++.|. .++|.++....... ..-.+..||.| |||+||.++++
T Consensus 23 ~~~~l~~~hg~~~~~~~~~~~~~~L~--~~v~~~d~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~l~GhS~Gg~va~~ 99 (283)
T 3tjm_A 23 SERPLFLVHPIEGSTTVFHSLASRLS--IPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVAFE 99 (283)
T ss_dssp SSCCEEEECCTTCCSGGGHHHHHHCS--SCEEEECCCTTSCCSCHHHHHHHHHHHHTTTCCSSCCEEEEETHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC--ceEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCCCCEEEEEECHhHHHHHH
Confidence 45679999999999999999999997 67776654321000 00001237888 99999998877
No 452
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=68.04 E-value=1.1e+02 Score=30.97 Aligned_cols=71 Identities=18% Similarity=-0.019 Sum_probs=41.2
Q ss_pred cceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcC------CceeeceEEeeC---CcEEEEEE---eCCEEEEE
Q 003327 477 SPLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLE------GRIECSAAVLAD---FSQVVVGC---YKGKIYFL 543 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~---~~~v~vg~---~dg~l~~~ 543 (829)
.|.-+.-..++.||+... .|+|+.++..+|+..-...++ ..-....++.++ ++.||+.- .++.|.++
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 343333335678999887 899999998777653222221 111123455442 45788752 35678888
Q ss_pred EcCC
Q 003327 544 DYLT 547 (829)
Q Consensus 544 d~~t 547 (829)
....
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 7654
No 453
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.17 E-value=72 Score=30.98 Aligned_cols=143 Identities=9% Similarity=0.031 Sum_probs=72.3
Q ss_pred CCeEEEEecCCCcEEEEECCC------CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---------Cc
Q 003327 485 SDIYLFVGSHSHKFICADAKR------SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT---------GD 549 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t------g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t---------G~ 549 (829)
.+..+++.|.+|.+......+ |...-.++-++.+. .+......+.+++.+..|.++.++... |.
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~-~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVV-SIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEE-EEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEE-EEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 356788889999999888654 22111122223332 333344445788888889888887432 21
Q ss_pred EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-------CeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003327 550 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 550 ~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
....+..++.+.....+ .++..+++.+..|......... |+-+-.+..++.......+ .+++.+++.|.+|
T Consensus 158 ~~i~L~~~d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~-~~~~~i~~~t~~G 235 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI-KEEVELLITTKNG 235 (276)
T ss_dssp ECCCCCTTCCEEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE-SSEEEEEEEETTS
T ss_pred EEEccCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe-CCCCEEEEEcCCC
Confidence 11112222333333223 3345677777777777766532 1111111111222221122 2234566667777
Q ss_pred eEEE--EEcc
Q 003327 623 RLTA--ISVK 630 (829)
Q Consensus 623 ~l~~--~~~~ 630 (829)
.+.. ++.+
T Consensus 236 ~~ir~~~~~~ 245 (276)
T 3no0_A 236 KAFYDKINQK 245 (276)
T ss_dssp CEEEEEEEGG
T ss_pred eEEEeeeCHH
Confidence 7766 6654
No 454
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}
Probab=65.25 E-value=0.99 Score=45.81 Aligned_cols=65 Identities=5% Similarity=-0.192 Sum_probs=49.0
Q ss_pred ccccccccccc--CccccchhhhhhcccccCCccccCCcccccCCCCCcc------------------CCCCCC-eeeec
Q 003327 371 LEEDKEHQFHS--GYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN------------------LSSVPM-SCSFS 429 (829)
Q Consensus 371 ~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~------------------~~~~~~-~~s~~ 429 (829)
..++++.++|+ ..+....|..+++.|..+..+|.+.-+++..+..+.. ..|+.| |||+|
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L~~~~~v~~~d~~G~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvGhS~G 158 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEELDAGRRVSALVPPGFHGGQALPATLTVLVRSLADVVQAEVADGEFALAGHSSG 158 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHHCTTSEEEEEECTTSSTTCCEESSHHHHHHHHHHHHHHHHTTSCEEEEEETHH
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHhCCCceEEEeeCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCEEEEEECHH
Confidence 34567999999 5677889999999998888888888877654322211 117888 99999
Q ss_pred ccccee
Q 003327 430 RCNKVM 435 (829)
Q Consensus 430 ~~~~~~ 435 (829)
|.+++.
T Consensus 159 g~vA~~ 164 (319)
T 3lcr_A 159 GVVAYE 164 (319)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988866
No 455
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus}
Probab=64.58 E-value=0.84 Score=44.82 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=46.3
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCccC-------------------CCCCC-eeeeccc
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNL-------------------SSVPM-SCSFSRC 431 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~-------------------~~~~~-~~s~~~~ 431 (829)
.+.+++++|+..+....|..+.+ |..+..+|.+.-+++.... +... .|+.| |+|+||.
T Consensus 20 ~~~~lv~lhg~~~~~~~~~~~~~-l~~~~~v~~~d~~G~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~GhS~Gg~ 97 (265)
T 3ils_A 20 ARKTLFMLPDGGGSAFSYASLPR-LKSDTAVVGLNCPYARDPE-NMNCTHGAMIESFCNEIRRRQPRGPYHLGGWSSGGA 97 (265)
T ss_dssp SSEEEEEECCTTCCGGGGTTSCC-CSSSEEEEEEECTTTTCGG-GCCCCHHHHHHHHHHHHHHHCSSCCEEEEEETHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCEEEEEECHhHH
Confidence 44679999999999999999999 8888788877766642221 1111 17888 9999999
Q ss_pred ccee
Q 003327 432 NKVM 435 (829)
Q Consensus 432 ~~~~ 435 (829)
++++
T Consensus 98 ia~~ 101 (265)
T 3ils_A 98 FAYV 101 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 456
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*
Probab=64.36 E-value=1.4 Score=43.49 Aligned_cols=62 Identities=6% Similarity=-0.220 Sum_probs=47.8
Q ss_pred ccccccccCccccchhhhhhcccccCCccccCCcccccCC-CCCcc-------------------CCCCCC-eeeecccc
Q 003327 374 DKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKD-GLPWN-------------------LSSVPM-SCSFSRCN 432 (829)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~-------------------~~~~~~-~~s~~~~~ 432 (829)
+++.++|+..++...|..+++.|..+..+|.+.-++++.. ..+.. ..|+.| |+|+|+.+
T Consensus 52 ~~lvllHG~~~~~~~~~~l~~~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~lvG~S~Gg~v 131 (280)
T 3qmv_A 52 LRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALL 131 (280)
T ss_dssp EEEEEECCTTCCGGGGTTHHHHHCTTEEEEECCCTTSGGGTTSCCCCSHHHHHHHHHHHHHHTTCSSSEEEEEETHHHHH
T ss_pred ceEEEECCCCCChHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHH
Confidence 5689999999999999999999988888888877776432 22211 116788 99999988
Q ss_pred cee
Q 003327 433 KVM 435 (829)
Q Consensus 433 ~~~ 435 (829)
++.
T Consensus 132 a~~ 134 (280)
T 3qmv_A 132 AYE 134 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 457
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=61.80 E-value=7.7 Score=29.07 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=38.4
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
+.+|+++.+|..|++..|..+............ ..+-.-.-+.+|..|.+|..|++..|.
T Consensus 12 ~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~-~~~W~~~~~~~Gr~YyyN~~T~~s~We 71 (75)
T 2jxw_A 12 TSEGYHYYYDLISGASQWEKPEGFQGDLKKTAV-KTVWVEGLSEDGFTYYYNTETGESRWE 71 (75)
T ss_dssp ETTTEEEEEETTTTEEECSCCSSCSSCCSSSSC-CCSEEEEEETTTEEEEEETTTTEEESS
T ss_pred CCCCCEEEEECCCCCEeecCCCcccccccccCC-CccEEEEECCCCCEEEEECcCCCEecc
Confidence 446899999999999999754321110000011 112333345589999999999998885
No 458
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=60.85 E-value=63 Score=25.86 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=36.1
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeec
Q 003327 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRT 683 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~ 683 (829)
..-++--.||.+..++ . +..+|......+... .-.+. -..+|.+..+|.+++.+|....
T Consensus 20 ~y~l~~q~DgNLvly~--~--~~~vW~ant~~~~~~-------~~~L~-l~~dGnLvL~d~~~~~vWss~t 78 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYD--H--STSTWASNTEIGGKS-------GCSAV-LQSDGNFVVYDSSGRSLWASHS 78 (105)
T ss_dssp TEEEEECTTSCEEEEE--T--TEEEEECCCCCTTCC-------SCEEE-ECTTSCEEEECTTCCEEEECCC
T ss_pred CEEEEECCCCeEEEEE--C--CEEEEEecCCCCCCc-------cEEEE-EeCCccEEEECCCcEEEEEecC
Confidence 4444445677788776 2 467887654433211 11222 2457888889988899998654
No 459
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=60.11 E-value=1.2e+02 Score=29.06 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=72.5
Q ss_pred EEEEecCCCcEEEEECCCCcE-EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-------CcEE---EEEec
Q 003327 488 YLFVGSHSHKFICADAKRSSV-LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------GDIY---WTFQT 556 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------G~~~---w~~~~ 556 (829)
.+++.|.+|.|.......-.. .-.++-++.+. ........+.+++.+..|.+|.+.... |+.+ -.+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~-~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK-AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEE-EEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEE-EEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 344567888777776432100 00122233332 233334445677777788888886422 2211 01111
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003327 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
++.+...... .++..+++.|..|.+...... .|...-.+..+..+.....+.++++.|++.|.+|.+..++.
T Consensus 83 ~e~Iv~~~~~-~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLME-SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECC-CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEe-CCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 2333333222 345667788888888777653 23333333222233332233123567888888998888886
Q ss_pred cC
Q 003327 630 KA 631 (829)
Q Consensus 630 ~~ 631 (829)
+.
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 460
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=59.65 E-value=69 Score=25.99 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=49.4
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCc
Q 003327 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC 692 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~ 692 (829)
...+.-..+|.+..++... +..+|......+. .+..+.-..+|.++.+|.++..+|+.......
T Consensus 25 ~~~L~~q~dGNLvL~~~~~--~~~vWssnt~~~~---------~~~~l~l~~dGNLVl~d~~~~~iW~S~t~~~~----- 88 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSK--TNIVWESGTSGRG---------QHCFMRLGHSGELDITDDRLNTVFVSNTVGQE----- 88 (113)
T ss_dssp TEEEEECTTSCEEEEETTT--TEEEEECCCTTSC---------SSCEEEECTTSCEEEECTTSCEEEECSCCCSS-----
T ss_pred CEEEEEcCCCEEEEEECCC--CEEEEECCcccCC---------cCEEEEEeCCCcEEEECCCCCEEEECCCcCCC-----
Confidence 4444456678888887643 6789976443211 11112223468888888667889986543210
Q ss_pred ccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003327 693 TSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 693 ~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
......-..||.+..++ +.+|.
T Consensus 89 -----~~~~~~L~~dGnlvly~----~~~W~ 110 (113)
T 3mez_B 89 -----GDYVLILQINGQAVVYG----PAVWS 110 (113)
T ss_dssp -----SCCEEEECTTSCEEEEC----SEEEE
T ss_pred -----CCEEEEEcCCceEEEec----CCEec
Confidence 11233344577777775 46675
No 461
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=58.72 E-value=1.3e+02 Score=29.09 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=41.3
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCC
Q 003327 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP 698 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~ 698 (829)
..+|.++.++.. ...+|......+. .....-..+|.+..+|.++..+|....... .
T Consensus 171 ~~dGnlvLy~~~---~~~yW~Sgt~~~~----------~~~l~l~~dGnLvl~d~~~~~vWsS~t~~~-----------~ 226 (276)
T 3m7h_A 171 QGDGNLVAYGPN---GAATWNAGTQGKG----------AVRAVFQGDGNLVVYGAGNAVLWHSHTGGH-----------A 226 (276)
T ss_dssp CTTSCEEEECTT---SSEEEECCCTTTT----------CCEEEECTTSCEEEECTTSCEEEECSCTTC-----------T
T ss_pred cCCceEEEEeCC---CeEEEECCCCCCc----------cEEEEEcCCCeEEEEeCCCcEEEEecCCCC-----------C
Confidence 345666555321 4677765432211 112223446788888855677887543311 1
Q ss_pred CeEEEEeeCCeEEEEeCCCCcEEEEE
Q 003327 699 SQVLICSRNGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~tG~~~w~~ 724 (829)
.....-..||.+..++. ..+|..
T Consensus 227 ~~rl~Ld~dGnLvly~~---~~~Wqs 249 (276)
T 3m7h_A 227 SAVLRLQANGSIAILDE---KPVWAR 249 (276)
T ss_dssp TCEEEECTTSCEEEEEE---EEEEES
T ss_pred CEEEEEcCCccEEEEcC---CCeEEc
Confidence 12333445777777764 467764
No 462
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=57.13 E-value=2e+02 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=14.1
Q ss_pred CCeEEEEeeCCeEEEEeCCCCcEEE
Q 003327 698 PSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
.+.++++...+.|+.+..+.+...|
T Consensus 293 ~g~~f~~~~~g~i~~~~~~~~~~~~ 317 (463)
T 2wg3_C 293 YGSYVFGDRNGNFLTLQQSPVTKQW 317 (463)
T ss_dssp TTCEEEEETTSCEEEEEC-----CC
T ss_pred cceEEEecCCCcEEEEEeCCCCcee
Confidence 4567777777788888765544444
No 463
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=56.54 E-value=75 Score=25.39 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=33.0
Q ss_pred EEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003327 574 WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
++-..||.+..++ .++.+|.......... ...+ .-..+|.+..+|.. ++.+|....
T Consensus 23 l~~q~DgNLvly~--~~~~vW~ant~~~~~~-------~~~L-~l~~dGnLvL~d~~---~~~vWss~t 78 (105)
T 4h3o_A 23 FIMQDDCNLVLYD--HSTSTWASNTEIGGKS-------GCSA-VLQSDGNFVVYDSS---GRSLWASHS 78 (105)
T ss_dssp EEECTTSCEEEEE--TTEEEEECCCCCTTCC-------SCEE-EECTTSCEEEECTT---CCEEEECCC
T ss_pred EEECCCCeEEEEE--CCEEEEEecCCCCCCc-------cEEE-EEeCCccEEEECCC---cEEEEEecC
Confidence 3334577777776 3578897654332111 1222 23457888888755 688997643
No 464
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=56.26 E-value=2.5e+02 Score=32.12 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--------ceeeceEEee-CCcEEEEEEeC------CEEEEEEcCCCc
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--------RIECSAAVLA-DFSQVVVGCYK------GKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--------~~~~~~~~~~-~~~~v~vg~~d------g~l~~~d~~tG~ 549 (829)
..+.+|+++..+.|+.-+ ++-..|+.-... ....+..+.+ +.+.+|++..+ +.|+.= .++-
T Consensus 26 ~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S--~DgG 101 (789)
T 1sqj_A 26 TKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVS--EDRG 101 (789)
T ss_dssp STTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEE--SSTT
T ss_pred CCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEE--CCCC
Confidence 357899999888788765 333458753221 1122334443 23578887643 455443 4555
Q ss_pred EEEEEecCC-e---------eeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------Ccccccceeec-
Q 003327 550 IYWTFQTCG-E---------VKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDE- 610 (829)
Q Consensus 550 ~~w~~~~~~-~---------~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~- 610 (829)
.-|+..... . ......+.+ +.+.+|+++..+.|+. . .+|-.-|+.... ...+....+++
T Consensus 102 ~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S-~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~ 179 (789)
T 1sqj_A 102 QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-S-SDRAKTWTNVTSIPDAFTNGIGYTSVIFDPE 179 (789)
T ss_dssp SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-E-SSTTSSCEEETTSCCCCSTTTCEEEEEECTT
T ss_pred CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-E-CCCCcccCCCccCccccCCCCCeEEEEECCC
Confidence 667643211 0 011223332 2467888875555553 2 333344553321 11122233333
Q ss_pred CCCEEEEEecC-CeEEEEEccCCCceEEEeec
Q 003327 611 VHDVLYVASTS-GRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 611 ~~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~ 641 (829)
+.+.+|++..+ +.|+. ..+ |-.-|+..
T Consensus 180 ~~~~~~~~~~~~~~v~~-S~D---gG~TW~~~ 207 (789)
T 1sqj_A 180 RNGTIYASATAPQGMYV-THD---GGVSWEPV 207 (789)
T ss_dssp STTCEEEEESSTTCEEE-ESS---TTSSCEEC
T ss_pred CCCEEEEEEcCCCeEEE-EcC---CCcCcccC
Confidence 34688988865 54543 333 33347653
No 465
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.57 E-value=1.7e+02 Score=29.13 Aligned_cols=144 Identities=6% Similarity=0.020 Sum_probs=76.5
Q ss_pred CeEEEEecCCCcEEEEECCC----CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---------CcEEE
Q 003327 486 DIYLFVGSHSHKFICADAKR----SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT---------GDIYW 552 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t----g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t---------G~~~w 552 (829)
+..+++.|.+|.|......+ +...-.++-++.+. ........+.|++.+..|.+|.+.... |..+-
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~-~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLL-AMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEE-EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEE-EEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 45567778899888876531 11000122223332 333444456777888888888887522 32111
Q ss_pred ---EEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcC--------CCeEEEeeccCCcccccceeecCCCEEEEEe
Q 003327 553 ---TFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFR--------NYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 619 (829)
Q Consensus 553 ---~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~--------tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t 619 (829)
.+..+..+.....+.+ ++..+++.|.+|.+...... .|...-++..+......... ..++.|++.|
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~-~~~~~i~l~T 162 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT-DGMNELFLVT 162 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE-CSCSEEEEEE
T ss_pred hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEe-CCCCEEEEEe
Confidence 1111223333322322 24568888888988887663 23222222222223222222 3356788899
Q ss_pred cCCeEEEEEccC
Q 003327 620 TSGRLTAISVKA 631 (829)
Q Consensus 620 ~~g~l~~~~~~~ 631 (829)
.+|.++.++...
T Consensus 163 ~~G~~irf~~~e 174 (323)
T 1wp5_A 163 HNGYALWFDESE 174 (323)
T ss_dssp TTSEEEEEEGGG
T ss_pred CCCcEEEEEHHH
Confidence 999999988653
No 466
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=55.42 E-value=81 Score=25.43 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=30.5
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
..+|.+..+| .++.+|......... .....-..+|.++.+| .+|+.+|.-.
T Consensus 27 ~~dGnlvl~~--~~~~vW~sn~~~~~~---------~~~l~l~~dGNLVl~~-~~~~~~W~S~ 77 (110)
T 3a0c_A 27 QGDCNFVLYD--SGKPVWASNTGGLGS---------GCRLTLHNNGNLVIYD-QSNRVIWQTK 77 (110)
T ss_dssp CTTSCEEEEE--TTEEEEECCCTTSCS---------SCEEEECTTSCEEEEC-TTCCEEEECC
T ss_pred cCCCcEEEEE--CCEEEEECCCCCCCC---------cEEEEEeCCCCEEEEC-CCCcEEEecC
Confidence 5577788888 478899765432210 0111222467777777 4688999744
No 467
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=55.05 E-value=60 Score=26.16 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=42.6
Q ss_pred ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCC
Q 003327 492 GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 571 (829)
Q Consensus 492 gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 571 (829)
-..||.+..++. ++.+|........ . .....-..||.++.+| .+++.+|...+.... ..
T Consensus 25 ~q~dGnLvly~~--~~~vW~snt~~~~--------~-~~~l~l~~dGNLvl~~-~~~~~~W~S~t~~~~---------~~ 83 (109)
T 3dzw_A 25 MQEDCNLVLYDV--DKPIWATNTGGLD--------R-RCHLSMQSDGNLVVYS-PRNNPIWASNTGGEN---------GN 83 (109)
T ss_dssp ECTTSCEEEEET--TEEEEECCCTTSS--------S-SCEEEECTTSCEEEEC-TTSCEEEECCCCCSS---------SC
T ss_pred EcCCCcEEEEeC--CEEEEECCcccCC--------C-CEEEEEeCCCCEEEEC-CCCCEEEECCCCCCC---------CC
Confidence 355677877875 6888975433211 0 0111223367777777 467889965432211 11
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEee
Q 003327 572 LIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
....-..||.+..++. .+|..
T Consensus 84 ~~~~L~ddGNlvly~~----~~W~s 104 (109)
T 3dzw_A 84 YVCVLQKDRNVVIYGT----ARWAT 104 (109)
T ss_dssp EEEEECTTSCEEEEES----CCCCC
T ss_pred EEEEEeCCCEEEEECC----CEEeC
Confidence 2223345677777763 45643
No 468
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=54.95 E-value=1.5e+02 Score=28.56 Aligned_cols=157 Identities=8% Similarity=0.069 Sum_probs=70.4
Q ss_pred cCCEEEEEeeCCeEEEEc-CC------CCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003327 655 ANRHVICCLVDGHVVALD-SS------GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 655 ~~~~l~~~~~~g~i~~~d-~~------g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
++..+++.|.+|.+.... .+ |...-.+..+..+.... ....++.|++.|.+|.++.++...=...- ...
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~--~~~~~~~ill~T~~G~~~r~~~~eip~~g--R~a 154 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIA--SSVDETHILLFTKKGRVARFSVREVPPST--PGA 154 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEE--ECCSSCEEEEEETTSEEEEEEGGGSCBCC--TTC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEE--EeCCCCEEEEEECCCEEEEEEhhhCCCcC--CCC
Confidence 356788888888888776 32 21111111111221111 11234567888888888888753211100 000
Q ss_pred CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCE
Q 003327 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGR 806 (829)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 806 (829)
.++.......+ -.+........+..+.+.+.+|.+.......=.... .. .+-.....-.+.++....+ .++.
T Consensus 155 ~Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~----R~--gkGv~~i~~~~~lv~~~~~~~~~~ 227 (276)
T 3no0_A 155 RGVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTN----RG--VKGTEVSGTKDTLVDLIPIKEEVE 227 (276)
T ss_dssp CCEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCC----TT--CCCEECCCSSSCEEEEEEESSEEE
T ss_pred CCEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCC----CC--CcceEEEcCCCcEEEEEEeCCCCE
Confidence 00000000000 000000011225678888889988877654211100 00 0001111122333332222 2357
Q ss_pred EEEeeeCCeEEE--Eecc
Q 003327 807 VFVGCRDDYIYC--IALE 822 (829)
Q Consensus 807 l~vg~~~g~l~~--~d~~ 822 (829)
+++.+.+|.+.. ++..
T Consensus 228 i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 228 LLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEEEGG
T ss_pred EEEEcCCCeEEEeeeCHH
Confidence 888899999988 8764
No 469
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=54.08 E-value=86 Score=25.32 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=41.4
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..+|.+..++. ++.+|........ ......-..+|.++.+| +++.+|.-...... +..
T Consensus 26 ~~dgnlvl~~~--~~~vW~sn~~~~~---------~~~~l~l~~~GNLvl~d--~~~~~W~S~~~~~~---------g~~ 83 (112)
T 1xd5_A 26 QNDCNLVLYDN--NRAVWASGTNGKA---------SGCVLKMQNDGNLVIYS--GSRAIWASNTNRQN---------GNY 83 (112)
T ss_dssp CTTSCEEEEET--TEEEEECCCTTSC---------SSEEEEECTTSCEEEEE--TTEEEEECCCCCSC---------CCC
T ss_pred cCCCcEEEEEC--CEEEEeCCCcCCC---------CCEEEEEeCCCCEEEEc--CCEEEEECCccCCC---------CCE
Confidence 45666777774 6788975533211 01112223467777777 57788874322110 111
Q ss_pred EEEeccCCeEEEEEcCCCeEEEee
Q 003327 573 IWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.+.-..+|.+..++ ..++.+|..
T Consensus 84 ~l~l~~dGnlvl~~-~~~~~~W~S 106 (112)
T 1xd5_A 84 YLILQRDRNVVIYD-NSNNAIWAT 106 (112)
T ss_dssp EEEECTTSCEEEEC-TTSCEEEEC
T ss_pred EEEEeCCCcEEEEC-CCCceEEEC
Confidence 22223455566665 335677764
No 470
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A*
Probab=53.53 E-value=1.4 Score=42.51 Aligned_cols=64 Identities=6% Similarity=-0.169 Sum_probs=46.8
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCC-------CC-ccCCCCCC-eeeecccccee
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG-------LP-WNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~-------~~-~~~~~~~~-~~s~~~~~~~~ 435 (829)
.+.+++++|+..+....|..+++.|..+..+|.++-+++..-. .. .+..||.| |||+|+.++++
T Consensus 21 ~~~~l~~~hg~~~~~~~~~~~~~~l~~~~~v~~~d~~g~~~~~~~~~~~i~~~~~~~~~~l~GhS~Gg~va~~ 93 (244)
T 2cb9_A 21 GGKNLFCFPPISGFGIYFKDLALQLNHKAAVYGFHFIEEDSRIEQYVSRITEIQPEGPYVLLGYSAGGNLAFE 93 (244)
T ss_dssp CSSEEEEECCTTCCGGGGHHHHHHTTTTSEEEEECCCCSTTHHHHHHHHHHHHCSSSCEEEEEETHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHHHHHHhCCCCCEEEEEECHhHHHHHH
Confidence 3457999999999999999999999888888877665531000 00 01237888 99999998876
No 471
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=53.14 E-value=1.8e+02 Score=28.85 Aligned_cols=103 Identities=7% Similarity=-0.020 Sum_probs=54.8
Q ss_pred CCeEEEEecCCCcEEEEECCC---------CcEEEE---EEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcC----
Q 003327 485 SDIYLFVGSHSHKFICADAKR---------SSVLWE---IKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYL---- 546 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---------g~~~w~---~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~---- 546 (829)
....|++.|..|+++.+.... |..+-. +..+..+.....+.. ++..+++.+.+|.+......
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~ 128 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKA 128 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhh
Confidence 455677777788888776532 221110 111222322222221 24568888888888877653
Q ss_pred ----CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC
Q 003327 547 ----TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 547 ----tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~ 588 (829)
.|...-.+.-++.+.....+ ..+..|++.+.+|.+..++..
T Consensus 129 ~~r~~G~~ai~l~e~d~lv~~~~~-~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 129 QRYSKPLTGINLKNDDQVVDVHLT-DGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp SCCSSCEECSCCCTTCCEEEEEEE-CSCSEEEEEETTSEEEEEEGG
T ss_pred ccccCceEEEEeCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEEEHH
Confidence 23322223323444433333 345567788888988888764
No 472
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.03 E-value=1.8e+02 Score=28.67 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=71.4
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEE---------EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---------
Q 003327 486 DIYLFVGSHSHKFICADAKRSSVLW---------EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT--------- 547 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w---------~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t--------- 547 (829)
+..+++.|++|.+....+.+-+..- .++-++.+. ........+.+++.+..|.+|.+....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~-~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFID-RLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEE-EEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEE-EEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 4456777899988888765422111 111222222 333344445677777778888776422
Q ss_pred CcEEE---EEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCEE
Q 003327 548 GDIYW---TFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 548 G~~~w---~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
|..+- .+..+..+.....+. .++..+++.+.+|.+...... .|...-++..+..+...... ..++.|
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~-~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT-SGEDEV 160 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEE-CTTCEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEe-CCCCEE
Confidence 22110 111122333332221 234567778888888777653 12222122222222222222 335678
Q ss_pred EEEecCCeEEEEEcc
Q 003327 616 YVASTSGRLTAISVK 630 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~ 630 (829)
++.|.+|.++.++..
T Consensus 161 ~l~T~~G~~irf~~~ 175 (307)
T 1zi0_A 161 MLFSAEGKVVRFKES 175 (307)
T ss_dssp EEEETTSEEEEEEGG
T ss_pred EEECCCCcEEEEEHH
Confidence 888999999998864
No 473
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=50.77 E-value=57 Score=24.19 Aligned_cols=60 Identities=12% Similarity=-0.045 Sum_probs=38.7
Q ss_pred cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003327 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 578 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+|.+|.++..|++..|............ .....+-.-..+.+|..|.+|..+ ++..|..
T Consensus 13 ~~G~~YYyN~~T~~s~We~P~~~~~~~e~-~~~~~~W~~~~~~~Gr~YyyN~~T--~~s~We~ 72 (75)
T 2jxw_A 13 SEGYHYYYDLISGASQWEKPEGFQGDLKK-TAVKTVWVEGLSEDGFTYYYNTET--GESRWEK 72 (75)
T ss_dssp TTTEEEEEETTTTEEECSCCSSCSSCCSS-SSCCCSEEEEEETTTEEEEEETTT--TEEESSC
T ss_pred CCCCEEEEECCCCCEeecCCCcccccccc-cCCCccEEEEECCCCCEEEEECcC--CCEeccC
Confidence 46899999999999999764321110000 011124444456689999999888 8888864
No 474
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=50.08 E-value=66 Score=25.98 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=41.0
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..||.+..++. +..|......... .....-..+|.++.+| .+|..+|........ ...
T Consensus 31 q~dGnLvl~~~---~~vW~snt~~~~~---------~~~l~l~~dGNLvl~d-~~~~~iW~S~t~~~~---------~~~ 88 (110)
T 3r0e_B 31 QGDCNLVLYGG---KYGWQSNTHGNGE---------HCFLRLNHKGELIIKD-DDFKTIWSSRSSSKQ---------GEY 88 (110)
T ss_dssp CTTSCEEEECS---SSCEECCCTTSSS---------SCEEEECTTSCEEEEC-TTCCEEEECCCCCSS---------SCC
T ss_pred cCCCeEEEECC---eEEEECCCcCCCc---------CEEEEEeCCCcEEEEe-CCCCEEEEcCCcCCC---------CCE
Confidence 55677777764 4778754332110 0111223367777777 467889975442211 112
Q ss_pred EEEeccCCeEEEEEcCCCeEEEee
Q 003327 573 IWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
..+-..||.+..++ ..+|..
T Consensus 89 ~~~L~~dGNlvly~----~~~W~t 108 (110)
T 3r0e_B 89 VLILQDDGFGVIYG----PAIFET 108 (110)
T ss_dssp EEEECTTSCEEEEC----SEEEES
T ss_pred EEEEcCCccEEEec----CCEecC
Confidence 22334567777776 367753
No 475
>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A
Probab=49.23 E-value=4.3 Score=40.43 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=46.9
Q ss_pred ccccccccccCcccc--chhhhhhcccccCCccccCCcccccCCCCCccCC-------------------CCCC-eeeec
Q 003327 372 EEDKEHQFHSGYSRT--ENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLS-------------------SVPM-SCSFS 429 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~-------------------~~~~-~~s~~ 429 (829)
.++++.++|+..++. ..|..+...|..+..+|.+.-+++..+..+ +.+ |+.| |+|+|
T Consensus 66 ~~~~lvllhG~~~~~~~~~~~~~~~~l~~~~~v~~~d~~G~G~s~~~-~~~~~~~a~~~~~~l~~~~~~~~~~LvGhS~G 144 (300)
T 1kez_A 66 GEVTVICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEPL-PSSMAAVAAVQADAVIRTQGDKPFVVAGHSAG 144 (300)
T ss_dssp CSSEEEECCCSSTTCSTTTTHHHHHHTSSSCCBCCCCCTTSSTTCCB-CSSHHHHHHHHHHHHHHHCSSCCEEEECCTHH
T ss_pred CCCeEEEECCCcccCcHHHHHHHHHhcCCCceEEEecCCCCCCCCCC-CCCHHHHHHHHHHHHHHhcCCCCEEEEEECHh
Confidence 446799999998866 888889998987788887777776433221 111 7788 99999
Q ss_pred ccccee
Q 003327 430 RCNKVM 435 (829)
Q Consensus 430 ~~~~~~ 435 (829)
|.+++.
T Consensus 145 G~vA~~ 150 (300)
T 1kez_A 145 ALMAYA 150 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988866
No 476
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.33 E-value=2.3e+02 Score=28.70 Aligned_cols=144 Identities=11% Similarity=0.125 Sum_probs=76.7
Q ss_pred CCeEEEEecCCCcEEEEECCC---------CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC--------
Q 003327 485 SDIYLFVGSHSHKFICADAKR---------SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------- 547 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------- 547 (829)
+...+++.|++|.|....+.+ |...-.++-++.+. ..........+++.+..|.+|.+....
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~-~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFID-QLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEE-EEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEE-EEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 345677789999888875422 22222222233332 333444445677777788888886422
Q ss_pred -CcEEE---EEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCE
Q 003327 548 -GDIYW---TFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 548 -G~~~w---~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
|..+- .+..+..+.....+. ..+..+++.+..|.+...... .|...-++..+......... ..++.
T Consensus 85 ~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~-~~~~~ 163 (370)
T 3l6v_A 85 RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT-DGDRD 163 (370)
T ss_dssp CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE-CSCCE
T ss_pred CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe-CCCce
Confidence 22111 112223343333332 134578888888888777643 22222222222223332223 33567
Q ss_pred EEEEecCCeEEEEEcc
Q 003327 615 LYVASTSGRLTAISVK 630 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~ 630 (829)
|++.|.+|.+..++..
T Consensus 164 i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 164 VLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEETTSEEEEEEGG
T ss_pred EEEEeCCCeEEEEEcc
Confidence 8888989998888754
No 477
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22
Probab=48.09 E-value=1.1 Score=42.81 Aligned_cols=62 Identities=10% Similarity=-0.136 Sum_probs=44.6
Q ss_pred cccccccccCccccchhhhhhcccccCCccccCCcccccCCC--------CCccCCCCCC-eeeecccccee
Q 003327 373 EDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG--------LPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~--------~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
+++++++|+..++...|..+.+.|.. ..+|.++-+++..-. .-.+..||.+ |||+|+.++++
T Consensus 17 ~~~l~~~hg~~~~~~~~~~~~~~l~~-~~v~~~d~~g~~~~~~~~~~~i~~~~~~~~~~l~G~S~Gg~ia~~ 87 (230)
T 1jmk_C 17 EQIIFAFPPVLGYGLMYQNLSSRLPS-YKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFE 87 (230)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHCTT-EEEEEECCCCSTTHHHHHHHHHHHHCCSSCEEEEEETHHHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHHHHhcCC-CeEEEecCCCHHHHHHHHHHHHHHhCCCCCeEEEEECHhHHHHHH
Confidence 45799999999999999999999976 777777655431000 0001237888 99999998876
No 478
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=45.24 E-value=1.3e+02 Score=24.70 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=30.1
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
..+|.+..++. ++++|......... ... ..-..+|.++.+| .+++++|.-.
T Consensus 37 ~~dgnlvly~~--~~~vW~sn~~~~~~--------~~~-l~l~~dGNLVl~d-~~~~~lW~S~ 87 (119)
T 1b2p_A 37 QTDCNLVLYDN--NNPIWATNTGGLGN--------GCR-AVLQPDGVLVVIT-NENVTVWQSP 87 (119)
T ss_dssp CTTSCEEEEET--TEEEEECCCTTSCS--------SCE-EEECTTSCEEEEC-TTCCEEEECS
T ss_pred ecCCCEEEEEC--CEEEEeCCCccCCC--------ceE-EEEccCCEEEEEe-CCCcEEEcCC
Confidence 44677777774 78899755432110 111 2223467777777 5788999754
No 479
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.47 E-value=2.7e+02 Score=27.41 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE-EEE-----------EEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcC----
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSV-LWE-----------IKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYL---- 546 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~-~w~-----------~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~---- 546 (829)
....+++.|..|.++.+....=.. -|. +..++.+.....+.. ++..+++.+.+|.++...+.
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~ 136 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKA 136 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhc
Confidence 345677778888888887642111 111 111223322222211 34567888888888888753
Q ss_pred ---CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC---------CeEEEeeccCCcccccceeecCCCE
Q 003327 547 ---TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---------YRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 547 ---tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
.|...-.+..++.+...... ..+..|++.|.+|.+..+.... |...-+...+..+.+...+ .+++.
T Consensus 137 ~r~~G~~~i~L~~~d~lv~~~~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v-~~~~~ 214 (312)
T 1suu_A 137 VKSRGVIVIKLNDKDFVTSAEIV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSV-KENPY 214 (312)
T ss_dssp ----CEECBCCCTTCCEEEEEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEEC-TTCSE
T ss_pred cCCCcEEEEecCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEE-CCCCe
Confidence 23322222223444444333 3456688888889888887643 1111112111222222222 23456
Q ss_pred EEEEecCCeEEEEEcc
Q 003327 615 LYVASTSGRLTAISVK 630 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~ 630 (829)
+++.|..|....++.+
T Consensus 215 l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 215 LLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEETTSEEEEEEGG
T ss_pred EEEEECCCceEEEEHH
Confidence 7788888887777754
No 480
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=41.14 E-value=1.1e+02 Score=25.13 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=29.4
Q ss_pred eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003327 536 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 536 ~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
.||.+..++. +.++|........ .+....-..+|.+..+| .+++.+|...
T Consensus 38 ~dgnlvly~~--~~~vW~sn~~~~~---------~~~~l~l~~dGNLVl~d-~~~~~lW~S~ 87 (119)
T 1b2p_A 38 TDCNLVLYDN--NNPIWATNTGGLG---------NGCRAVLQPDGVLVVIT-NENVTVWQSP 87 (119)
T ss_dssp TTSCEEEEET--TEEEEECCCTTSC---------SSCEEEECTTSCEEEEC-TTCCEEEECS
T ss_pred cCCCEEEEEC--CEEEEeCCCccCC---------CceEEEEccCCEEEEEe-CCCcEEEcCC
Confidence 3566666773 7888975443211 01122223577788887 4678999764
No 481
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=39.00 E-value=3.2e+02 Score=27.65 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=50.9
Q ss_pred CCCEEEEEecCCeEEEEEccC-------CCceEEEe---eccCCcceeeeeee---ecCCEEEEEeeCCeEEEEc-C---
Q 003327 611 VHDVLYVASTSGRLTAISVKA-------LPFHTLWL---HELEVPAFASLCIT---SANRHVICCLVDGHVVALD-S--- 673 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~~-------~~g~~~w~---~~~~~~~~~s~~~~---~~~~~l~~~~~~g~i~~~d-~--- 673 (829)
.++.|++.|..|.+|.+.... ..|..+-. +..+..+ .+.... ..+..+++.|.+|.+.... .
T Consensus 56 t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~I-v~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~ 134 (370)
T 3l6v_A 56 THDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERV-QAVLPVREYADNRYVFMATRNGTVKKTPLSEFA 134 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCE-EEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEE-EEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhh
Confidence 356788888888888887432 11322211 1111111 222221 1345788888888776654 1
Q ss_pred ----CCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003327 674 ----SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 674 ----~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.|...-.+..+..+.... ....++.|.+.|.+|.+..++..
T Consensus 135 ~~~~~G~~ai~L~~~d~lv~v~--~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 135 FRLARGKIAINLDEGDALVGVA--LTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SCCTTCEESSCCCTTCCEEEEE--EECSCCEEEEEETTSEEEEEEGG
T ss_pred cccCCceEEEEeCCCCEEEEEE--EeCCCceEEEEeCCCeEEEEEcc
Confidence 222222222222222211 11234567788888877777653
No 482
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A*
Probab=38.62 E-value=2.8e+02 Score=26.75 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=41.3
Q ss_pred eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003327 536 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 536 ~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.+|.++.++ ..++..|.....+.. .....-..+|.++.+|. +++.+|.....+.. ...
T Consensus 172 ~dGnlvLy~-~~~~~yW~Sgt~~~~----------~~~l~l~~dGnLvl~d~-~~~~vWsS~t~~~~----------~~r 229 (276)
T 3m7h_A 172 GDGNLVAYG-PNGAATWNAGTQGKG----------AVRAVFQGDGNLVVYGA-GNAVLWHSHTGGHA----------SAV 229 (276)
T ss_dssp TTSCEEEEC-TTSSEEEECCCTTTT----------CCEEEECTTSCEEEECT-TSCEEEECSCTTCT----------TCE
T ss_pred CCceEEEEe-CCCeEEEECCCCCCc----------cEEEEEcCCCeEEEEeC-CCcEEEEecCCCCC----------CEE
Confidence 456666664 235677764332210 01222344677777774 34677865433211 122
Q ss_pred EEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003327 616 YVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
++-..+|.+..++. ..+|......|
T Consensus 230 l~Ld~dGnLvly~~-----~~~Wqsf~~~P 254 (276)
T 3m7h_A 230 LRLQANGSIAILDE-----KPVWARFGFQP 254 (276)
T ss_dssp EEECTTSCEEEEEE-----EEEEESSSCCT
T ss_pred EEEcCCccEEEEcC-----CCeEEccCccC
Confidence 33344666766652 35776544433
No 483
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=38.04 E-value=1.2e+02 Score=24.24 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=40.0
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..||.+..++. .|......... .....-..||.++.+| .+++.+|........ ...
T Consensus 28 q~dGNLvl~~~-----~Wssnt~~~~~---------~~~l~l~~dGnLvl~d-~~~~~vWss~t~~~~---------~~~ 83 (109)
T 3r0e_A 28 QDDCNLVLYNG-----NWQSNTANNGR---------DCKLTLTDYGELVIKN-GDGSTVWKSGAQSVK---------GNY 83 (109)
T ss_dssp CTTSCEEEETT-----TEECCCTTSCS---------SCEEEECTTSCEEEEC-TTSCEEEECCCCCSS---------SCC
T ss_pred ecCCeEEEEeC-----eEEcCCCCCCC---------cEEEEEcCCCeEEEEe-CCCCEEEcCCCcCCC---------cCE
Confidence 55677777763 58754332110 1112223467777787 467889964432110 111
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeec
Q 003327 573 IWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
..+-..||.+..++ ..+|...
T Consensus 84 ~~~L~~dGNlvly~----~~~W~s~ 104 (109)
T 3r0e_A 84 AAVVHPDGRLVVFG----PSVFKID 104 (109)
T ss_dssp EEEEETTTEEEEEC----SEEEEEC
T ss_pred EEEEcCCCeEEEEe----cCEECCC
Confidence 22233567777776 4778653
No 484
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=38.04 E-value=1.5e+02 Score=23.63 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=29.5
Q ss_pred ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003327 577 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
..||.++.++. +..+|........ ....+.-..+|.++.+|.. +..+|...
T Consensus 26 q~dGnLvly~~--~~~vW~snt~~~~---------~~~~l~l~~dGNLvl~~~~---~~~~W~S~ 76 (109)
T 3dzw_A 26 QEDCNLVLYDV--DKPIWATNTGGLD---------RRCHLSMQSDGNLVVYSPR---NNPIWASN 76 (109)
T ss_dssp CTTSCEEEEET--TEEEEECCCTTSS---------SSCEEEECTTSCEEEECTT---SCEEEECC
T ss_pred cCCCcEEEEeC--CEEEEECCcccCC---------CCEEEEEeCCCCEEEECCC---CCEEEECC
Confidence 45677777775 6889976543211 0112223456777777643 57888654
No 485
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=37.31 E-value=1.6e+02 Score=23.73 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=29.2
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
..+|.+..++ .++.+|........ ....+. -..+|.|+.+| .+++.+|...
T Consensus 27 ~~dgnlvly~--~~~~vW~sn~~~~~--------~~~~l~-l~~~GnLvl~d-~~~~~vW~S~ 77 (115)
T 2dpf_A 27 QNKCNLVKYQ--NGRQIWASNTDRRG--------SGCRLT-LLSDGNLVIYD-HNNNDVWGSA 77 (115)
T ss_dssp CTTSCEEEEE--TTEEEEECSCTTSC--------SSCEEE-ECTTSCEEEEC-TTCCEEEECC
T ss_pred cCCCcEEEEe--CCEEEEeCCCCCCC--------CceEEE-ECCCCcEEEEC-CCceEEEEcC
Confidence 4466676676 47788975433221 001122 23467788887 4688899743
No 486
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A
Probab=36.94 E-value=9.2 Score=36.67 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=46.0
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCccCC------------------CCCC-eeeecccc
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLS------------------SVPM-SCSFSRCN 432 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~------------------~~~~-~~s~~~~~ 432 (829)
.++++.++|+..++...+..+.+.|.....++.+.-++|+.+..+...+ ++.+ |+|+||.+
T Consensus 15 ~~~~vvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~v 94 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKA 94 (255)
T ss_dssp CCCCEEEECCTTCCTTTTHHHHHHHTTTSCEEEECCTTSTTSCCCSCCCHHHHHHHHHHHHHHHTCSCEEEEEETHHHHH
T ss_pred CCCCEEEEcCCcccHhHHHHHHHHHHhhCcEEEecCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCCeeEEeeCccHHH
Confidence 3467889999988888888888888776777666667764433322222 6677 99999988
Q ss_pred cee
Q 003327 433 KVM 435 (829)
Q Consensus 433 ~~~ 435 (829)
++.
T Consensus 95 a~~ 97 (255)
T 3bf7_A 95 VMA 97 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 487
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.56 E-value=3.2e+02 Score=26.81 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCEEEEEecCCeEEEEEccC-----CCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CC----CC-----
Q 003327 612 HDVLYVASTSGRLTAISVKA-----LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS----GS----- 676 (829)
Q Consensus 612 ~~~l~v~t~~g~l~~~~~~~-----~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~----g~----- 676 (829)
+..+++.|.+|.+-...+.. ..|...-....+ ...........++.+++.+.+|.++.++ .+ |+
T Consensus 109 ~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv 187 (307)
T 1zi0_A 109 GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 187 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe
Confidence 45788889899887776542 012222122211 1223333444566788888888888876 32 11
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003327 677 IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..-....+..+.+... ...+..+++.|..|.....+.
T Consensus 188 ~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 188 RGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp ECCCCCTTCCEEEEEC--CCSSCEEEEEETTSEEEEECG
T ss_pred EeEEeCCCCEEEEEEE--ecCCCEEEEEEcCCceEEEEH
Confidence 1111111222222211 112345777777777666654
No 488
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=35.66 E-value=9.9 Score=29.83 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003327 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
+.+|+.|.+|..|++..|..+.............. +-.-.-+.+|.+|.+|..|++..|..
T Consensus 21 ~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~-~W~~~~~~~Gr~Yy~N~~T~~s~We~ 81 (92)
T 2l5f_A 21 SPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKC-PWKEYKSDSGKTYYYNSQTKESRWAK 81 (92)
T ss_dssp CTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSC-SEEEEECTTCCEEEEETTTTEEESCC
T ss_pred cCCCCEEEEECCCCceecccCcccccccccccccc-ceEEEECCCCCEEEEECCCCCeeccC
Confidence 45789999999999999976432211000000111 22222345799999999999998853
No 489
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11}
Probab=35.31 E-value=9.2 Score=37.09 Aligned_cols=64 Identities=3% Similarity=-0.191 Sum_probs=45.6
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCccC--C------------------CCCC-eeeecc
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNL--S------------------SVPM-SCSFSR 430 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~--~------------------~~~~-~~s~~~ 430 (829)
.++++.++|+..++...+..+...|..+..++...-++++.+..+... + ++.+ |+|+||
T Consensus 14 ~~~~vvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~GG 93 (268)
T 3v48_A 14 DAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGA 93 (268)
T ss_dssp TCCEEEEECCTTCCGGGGHHHHHHHHTTSEEEECCCTTBTTBCCCCCTTCCHHHHHHHHHHHHHHTTCCSEEEEEETHHH
T ss_pred CCCEEEEeCCCCccHHHHHHHHHHHhhcCeEEEECCCCCCCCCCCccccCCHHHHHHHHHHHHHHcCCCCeEEEEecHHH
Confidence 356788899988887788888888877777777777776544322211 1 5677 999999
Q ss_pred cccee
Q 003327 431 CNKVM 435 (829)
Q Consensus 431 ~~~~~ 435 (829)
.+++.
T Consensus 94 ~ia~~ 98 (268)
T 3v48_A 94 LVGMQ 98 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88766
No 490
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida}
Probab=33.66 E-value=11 Score=36.15 Aligned_cols=64 Identities=8% Similarity=-0.075 Sum_probs=46.7
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCc-cCC------------------CCCC-eeeeccc
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPW-NLS------------------SVPM-SCSFSRC 431 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~-~~~------------------~~~~-~~s~~~~ 431 (829)
.++++.++|+..++...+..+.+.|.....++.+.-++++.+..+. ..+ ++.+ |+|+|+.
T Consensus 20 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lvGhS~Gg~ 99 (264)
T 3ibt_A 20 HAPTLFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTDSGDFDSQTLAQDLLAFIDAKGIRDFQMVSTSHGCW 99 (264)
T ss_dssp SSCEEEEECCTTCCGGGGTTHHHHHTTTSEEEEECCTTCSTTCCCCSCCCHHHHHHHHHHHHHHTTCCSEEEEEETTHHH
T ss_pred CCCeEEEEcCCCCcHhHHHHHHHHHHhcCcEEEEccccCCCCCCCccccCHHHHHHHHHHHHHhcCCCceEEEecchhHH
Confidence 3567899999999988899999999777777777667764443321 111 6677 9999998
Q ss_pred ccee
Q 003327 432 NKVM 435 (829)
Q Consensus 432 ~~~~ 435 (829)
+++.
T Consensus 100 ia~~ 103 (264)
T 3ibt_A 100 VNID 103 (264)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 491
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=33.47 E-value=1.8e+02 Score=23.20 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=34.8
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeec
Q 003327 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRT 683 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~ 683 (829)
...+.-..+|.+..++ . +..+|......+. .+....-..+|.+..+|.++..+|+...
T Consensus 21 ~~~l~~~~dGnlvl~~--~--~~~vW~sn~~~~~---------~~~~l~l~~dGNLVl~~~~~~~~W~S~t 78 (110)
T 3a0c_A 21 SYRLIMQGDCNFVLYD--S--GKPVWASNTGGLG---------SGCRLTLHNNGNLVIYDQSNRVIWQTKT 78 (110)
T ss_dssp TEEEEECTTSCEEEEE--T--TEEEEECCCTTSC---------SSCEEEECTTSCEEEECTTCCEEEECCC
T ss_pred CEEEEEcCCCcEEEEE--C--CEEEEECCCCCCC---------CcEEEEEeCCCCEEEECCCCcEEEecCC
Confidence 3333345577787777 3 6788976543221 1112222356888888877889998653
No 492
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=33.03 E-value=1.9e+02 Score=23.08 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=37.4
Q ss_pred ChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCch--HHHHHHHHHHHHhcCCC
Q 003327 181 ALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS--EIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 181 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~l~~~l~~~l~~ 242 (829)
...+|++.+.+.|+|.++-=+-....+....+-+-++..+..... .....++++.+++.+|.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 346788899999999876444333333333445555555443222 25667888888888763
No 493
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.35 E-value=1.8e+02 Score=23.30 Aligned_cols=84 Identities=8% Similarity=0.099 Sum_probs=41.6
Q ss_pred EEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC
Q 003327 490 FVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP 569 (829)
Q Consensus 490 ~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 569 (829)
+.-..||.+..++.. + .|......... +....-..+|.++.+|......+|...+.... ..
T Consensus 24 L~~q~dGnLvl~~~~-~--vW~snt~~~~~---------~~~l~l~~dGNLVl~~~~~~~~vW~S~t~~~~-------~~ 84 (111)
T 3mez_A 24 FVMQGDCNLVLYNEA-G--GFQSNTHGRGV---------DCTLRLNNRGQLEIHSANSNTPVWVYPRSVNT-------VR 84 (111)
T ss_dssp EEECTTSCEEEECSS-C--CEECCCTTSCS---------SCEEEECTTSCEEEECSSCSSCSEEESSSCCC-------CS
T ss_pred EEEccCCeEEEECCC-C--EEECCcccCCc---------CEEEEEcCCCcEEEEeCCCCEEEEEeccccCC-------CC
Confidence 333567778878754 3 88754432211 01112223667777774333458965431100 01
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEee
Q 003327 570 RQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.....+-..||.+..++ ..+|..
T Consensus 85 ~~~~l~Lq~dGNlvly~----~~~W~s 107 (111)
T 3mez_A 85 GNYAATLGPDQHVTIYG----PAIWST 107 (111)
T ss_dssp SCCEEEECTTSCEEEEC----SEEEEC
T ss_pred cCEEEEECCCCeEEEec----cCEEcc
Confidence 12233334567777775 567764
No 494
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A*
Probab=30.90 E-value=10 Score=36.33 Aligned_cols=63 Identities=8% Similarity=-0.120 Sum_probs=44.7
Q ss_pred cccccccccCccccchhhhhhcccccCCccccCCcccccCCC-CCccCC------------------CCCC-eeeecccc
Q 003327 373 EDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG-LPWNLS------------------SVPM-SCSFSRCN 432 (829)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~-~~~~~~------------------~~~~-~~s~~~~~ 432 (829)
.+++.++|+..+....+..+++.|..+..++.+.-++++.+. .+...+ ++.+ |+|+|+.+
T Consensus 20 ~~~vv~~HG~~~~~~~~~~~~~~l~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvG~S~Gg~i 99 (267)
T 3fla_A 20 RARLVCLPHAGGSASFFFPLAKALAPAVEVLAVQYPGRQDRRHEPPVDSIGGLTNRLLEVLRPFGDRPLALFGHSMGAII 99 (267)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHTTTEEEEEECCTTSGGGTTSCCCCSHHHHHHHHHHHTGGGTTSCEEEEEETHHHHH
T ss_pred CceEEEeCCCCCCchhHHHHHHHhccCcEEEEecCCCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeChhHHH
Confidence 456889999999988999999999777777666666653221 111111 6777 99999988
Q ss_pred cee
Q 003327 433 KVM 435 (829)
Q Consensus 433 ~~~ 435 (829)
++.
T Consensus 100 a~~ 102 (267)
T 3fla_A 100 GYE 102 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 495
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.82 E-value=1.4e+02 Score=32.40 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCCeEEEEecCC-------------CcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEe
Q 003327 484 DSDIYLFVGSHS-------------HKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY 536 (829)
Q Consensus 484 d~~~~l~igs~~-------------g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~ 536 (829)
+.++.||+++.. +.++++++.+|++.-....+. .-.+.+++++|++.||+.-+
T Consensus 484 d~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 484 DKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 567899996653 269999999998765444332 22356788899889998754
No 496
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.34 E-value=6.4e+02 Score=28.47 Aligned_cols=183 Identities=15% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcc-cccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeecc-C
Q 003327 569 PRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSI-FGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHEL-E 643 (829)
Q Consensus 569 ~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~-~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~-~ 643 (829)
+...+|+++. ++.|+. . .++-.-|+...+-.. ...+.++. +.+.+|+++ +|.|+. ..+ |-.-|+... .
T Consensus 555 ~~~~~~~~~~~~~~~v~~-S-~D~G~tW~~~~~l~~~~~~i~~d~~~~~~~y~g~-~g~v~~-S~D---gG~tW~~~~~~ 627 (763)
T 3a0f_A 555 GKTFVWSPSKADGKGPYT-S-SDYGKTWTAPSGLSKQTTGIAADRVQANTFYVYV-EGDFFV-STD---GGKSYTKKGNG 627 (763)
T ss_dssp SSCEEEECSSCCSSCCEE-E-SSTTSCCBCCBSCCCCCSCEEECSSSTTCEEEEE-TTEEEE-ESS---TTSBCEEECBT
T ss_pred CCcEEEEecccCCCceEE-e-CCCCCCCeecCCCCCCcceEEEeccCCCEEEEEc-CCCEEE-EeC---CCcCccccccC
Confidence 4567888874 444432 2 333344654321111 11222222 346788885 566654 223 434565431 1
Q ss_pred Cc---ceee-eeeee-cCCEEEEEeeCCeEEEEcCCCCEEEEeecCCc-ee-----e-cCcccccCCCeEEEEe-----e
Q 003327 644 VP---AFAS-LCITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGGP-IF-----A-GPCTSFALPSQVLICS-----R 706 (829)
Q Consensus 644 ~~---~~~s-~~~~~-~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~-~~-----~-~~~~~~~~~~~i~~~t-----~ 706 (829)
.+ .... ..+.+ ..+.+|+++..+.|+.-+..|+ -|+.-...+ .. . ...........||+.. .
T Consensus 628 lp~~~~~~~~i~~~~~~~~~l~~~~~~~~l~~S~D~G~-tW~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~~~~~ 706 (763)
T 3a0f_A 628 LPCCWTYTGTPVTSNLRAGELWVSVKGVGIYHSTDFGN-TFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPSASQ 706 (763)
T ss_dssp SCCSSCCCEEEEECSSSTTCEEEEETTTEEEEESSTTS-BCEECTTBTTTBEEEEEEEECCSSTTSSCEEEEEEECSTTS
T ss_pred CCcccCccccEEECCCCCCcEEEEcCCCeEEEEcCCCC-CceEccCCCcccccceeEEeeecCCCCCceEEEEEEcccCC
Confidence 12 1111 23333 4578888887667766554444 455432111 00 0 1111111235678765 4
Q ss_pred CCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003327 707 NGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+++||.-+ +.| .-|+...... ....+. .+.. .....+.||+++..++|++-+.
T Consensus 707 ~~gl~~S~-D~G-~tW~~~~~~~~~~~~~~---~i~~----~p~~~~~v~~~T~GrGi~~g~~ 760 (763)
T 3a0f_A 707 PEGLYMST-DNG-GLWTRLNDDAHNYGGAT---VISG----DPRIYGRVYIGMNGRGIICAQA 760 (763)
T ss_dssp CSEEEEES-STT-SCCEECSCTTCCTBCEE---EEEE----CTTSTTEEEEEEBSSCEEEEES
T ss_pred CcEEEEeC-CCC-CCcEeccCccccCCCcc---eEEe----CCCCCCEEEEeCCCCeEEEEec
Confidence 56666554 334 4576543211 000000 0000 0112567999998888887654
No 497
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=30.14 E-value=16 Score=35.55 Aligned_cols=62 Identities=8% Similarity=-0.157 Sum_probs=44.8
Q ss_pred ccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCcc-CC------------------CCCC-eeeeccccc
Q 003327 374 DKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN-LS------------------SVPM-SCSFSRCNK 433 (829)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~-~~------------------~~~~-~~s~~~~~~ 433 (829)
+++.++|+-.++...+..+...|..+..++.+.-++|+.+..+.. .+ ++++ |+|+||.++
T Consensus 28 p~vvllHG~~~~~~~w~~~~~~L~~~~rvia~DlrGhG~S~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhSmGG~va 107 (276)
T 2wj6_A 28 PAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVL 107 (276)
T ss_dssp CEEEEECCTTCCGGGGHHHHHHHTTTSCEEEECCTTCSSSCCCCCCCCHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHH
Confidence 568899998888777888888887766666677777654443311 11 5777 999999888
Q ss_pred ee
Q 003327 434 VM 435 (829)
Q Consensus 434 ~~ 435 (829)
+.
T Consensus 108 ~~ 109 (276)
T 2wj6_A 108 VE 109 (276)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 498
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Probab=29.67 E-value=11 Score=36.29 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=45.7
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCcc--CC------------------CCCC-eeeecc
Q 003327 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN--LS------------------SVPM-SCSFSR 430 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~--~~------------------~~~~-~~s~~~ 430 (829)
.++++.++|+..++...+..+.+.|.....++.+.-++|+.+..+.. .+ ++.+ |+|+||
T Consensus 15 ~g~~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l~~l~~~~~~lvGhS~Gg 94 (269)
T 2xmz_A 15 TNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSITLFGYSMGG 94 (269)
T ss_dssp CSEEEEEECCTTCCGGGGTTTHHHHHTTSEEEEECCTTSTTCCCCTTSCCCHHHHHHHHHHHHGGGTTSEEEEEEETHHH
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHhhcCeEEEecCCCCCCCCCCCCCccCHHHHHHHHHHHHHHcCCCcEEEEEECchH
Confidence 34578899999988888888888887666666666677654433322 12 5667 999999
Q ss_pred cccee
Q 003327 431 CNKVM 435 (829)
Q Consensus 431 ~~~~~ 435 (829)
.+++.
T Consensus 95 ~va~~ 99 (269)
T 2xmz_A 95 RVALY 99 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88866
No 499
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=29.47 E-value=59 Score=25.33 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=39.4
Q ss_pred ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003327 577 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
+.+|..|.+|..|++..|............ .....+-.-.-+.+|.+|.+|..+ +...|..
T Consensus 21 ~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~-~~~~~~W~~~~~~~Gr~Yy~N~~T--~~s~We~ 81 (92)
T 2l5f_A 21 SPDGRTYYYNTETKQSTWEKPDDLKTPAEQ-LLSKCPWKEYKSDSGKTYYYNSQT--KESRWAK 81 (92)
T ss_dssp CTTSCEEEEETTTTEEESSCSGGGTCHHHH-HHHSCSEEEEECTTCCEEEEETTT--TEEESCC
T ss_pred cCCCCEEEEECCCCceecccCccccccccc-cccccceEEEECCCCCEEEEECCC--CCeeccC
Confidence 347899999999999999764322110000 001124333456689999999888 8888865
No 500
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.39 E-value=6.5e+02 Score=28.25 Aligned_cols=50 Identities=14% Similarity=-0.017 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--------ceeeceEEee-CCcEEEEEEe
Q 003327 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--------RIECSAAVLA-DFSQVVVGCY 536 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--------~~~~~~~~~~-~~~~v~vg~~ 536 (829)
..+.||+++..+.|+..+- .| ..|+.-... ....+..+.+ +.+.+|+++.
T Consensus 34 ~~~~~~~~~~~ggv~rS~D-~G-~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~ 92 (737)
T 2cn3_A 34 EKDLIYARAAIGGAYRWDP-ST-ETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAG 92 (737)
T ss_dssp STTCEEEECSSSCEEEEET-TT-TEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEEC
T ss_pred CCCEEEEEecCCcEEEeCC-CC-CCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEec
Confidence 3478999997788888762 34 458743221 1122334443 3467888863
Done!