BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003328
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 92 LINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSS 150
L+NLQ+L L+W + + A+I L+ L+ L R S + L I L +L+ LDL C++
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 151 LVVIAPNVISKFSRLEELYMGD 172
L P + + L+ L + D
Sbjct: 242 LRNYPP-IFGGRAPLKRLILKD 262
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 27/122 (22%)
Query: 67 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVA-AIGQLKKLEILSFRG- 124
+G L+ L L SLP+S+ L NL++L + L + AI L KLE L RG
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 125 ------------------------SDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVIS 160
S++ LPL+I +LT+L+ LDL C +L + P++I+
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIA 298
Query: 161 KF 162
+
Sbjct: 299 QL 300
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 66 FEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 121
F G L+VL + G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 122 FRGSDIKQLPLEI-GQLTRLQ 141
+ +K +P I +LT LQ
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQ 521
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS LA L GL+KLT L++
Sbjct: 248 N---------NQISN--------------------------LAPLSGLTKLTELKL 268
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS +LA L GL+KLT L++
Sbjct: 247 N---------NQIS--------------------------NLAPLSGLTKLTELKL 267
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS +LA L GL+KLT L++
Sbjct: 248 N---------NQIS--------------------------NLAPLSGLTKLTELKL 268
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS +LA L GL+KLT L++
Sbjct: 252 N---------NQIS--------------------------NLAPLSGLTKLTELKL 272
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS LA L GL+KLT L++
Sbjct: 248 N---------NQISN--------------------------LAPLSGLTKLTELKL 268
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS +LA L GL+KLT L++
Sbjct: 247 N---------NQIS--------------------------NLAPLSGLTKLTELKL 267
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 36/116 (31%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
S L +L NL++L Q+ D+ +G L L+ LS G+ +K + + LT L LDL+
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 250
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202
N N IS LA L GL+KLT L++
Sbjct: 251 N---------NQISN--------------------------LAPLSGLTKLTELKL 271
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 66 FEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 121
F G L+VL + G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 122 FRGSDIKQL-PLEIGQLTRLQLLDLS 146
++ L L LQ+LD S
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYS 526
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 66 FEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 121
F G L+VL + G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 122 FRGSDIKQL-PLEIGQLTRLQLLDLS 146
++ L L LQ+LD S
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYS 550
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 66 FEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 121
F G L+VL + G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 122 FRGSDIKQL-PLEIGQLTRLQLLDLS 146
++ L L LQ+LD S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYS 231
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 480 PSLERVSLTHCPNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMI 539
P + + LT+ + F RIL I + C KE G +++G NLN+ + +
Sbjct: 202 PHVAALMLTNPNTLGLFERRILEISRLC------KEAGVQLYYDGANLNAIMGWARPGDM 255
Query: 540 GFRDIEHLQL 549
GF D+ HL L
Sbjct: 256 GF-DVVHLNL 264
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 88 SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQ 141
SL L NL+ L + +L+ + +G L KLE+L G++I G LTRL+
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLK 172
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 92 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSS 150
L+NL+ L L C L+D+ + L +LE L G+ + + P LT L+ L L + +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQ 213
Query: 151 LVVIAPNVISKFSRLEEL 168
+ I N LEEL
Sbjct: 214 VATIERNAFDDLKSLEEL 231
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 92 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSS 150
L+NL+ L L C L+D+ + L +LE L G+ + + P LT L+ L L + +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQ 213
Query: 151 LVVIAPNVISKFSRLEELYMG 171
+ I N LEEL +
Sbjct: 214 VATIERNAFDDLKSLEELNLS 234
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 66 FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI--GQLKKLEILSFR 123
F G +EL L H S LPS L L L+ L L + E++ I L LS +
Sbjct: 277 FSGLQELD---LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333
Query: 124 GSDIKQLPLEIG---QLTRLQLLDLSN 147
G + K+L L G L L+ LDLS+
Sbjct: 334 G-NTKRLELGTGCLENLENLRELDLSH 359
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 26/188 (13%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 109
Query: 147 NCSSLVVIAPNVISKFSRLEELYMGDS---------FSQWDKVEGGS--NASLAE----- 190
+ L + + L+ELY+ + + K+E S N +L E
Sbjct: 110 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
Query: 191 LKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEAR---------RIWPVNSETSR 241
L GL L TL + +P+ + L + G R W ++ +
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 228
Query: 242 LVWLHGLE 249
VW G++
Sbjct: 229 YVWKQGVD 236
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 87 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 147 NCSSLVVIAPNVISKFSRLEELYM 170
+ L + + L+ELY+
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYL 131
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 432 CDKIEEIIRHVGEEVKENRIAFG-------------KLKVLILNYLPTLTSFCLENYTLE 478
C I EI R + +K RI F KL +L LN + +E
Sbjct: 86 CVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQS 145
Query: 479 FPSLERVSLTHCPNMKTFSHRILSIP-KPCKVQVTEKEEGELHHW 522
R+S+ PN+ +H LS K K V EKE E+ W
Sbjct: 146 LGIKARISIRINPNIDAKTHPYLSTGLKENKFGVGEKEALEMFLW 190
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 291 FPRLKHLWVER-------CSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETIC 338
F R+ +WVE CS + H ++ +R + P+L+ L L+ +++ +T C
Sbjct: 696 FKRIAEMWVEEIDVLEAACSAMKH---AITNLRSSFQPMLQDLCLFIVASFQTRC 747
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 66 FEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 122
F+ +LK L L S+P+ + +L NLQTL L QL+ V A +L KL+ ++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 123 RGS 125
G+
Sbjct: 187 FGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 66 FEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 122
F+ +LK L L S+P+ + +L NLQTL L QL+ V A +L KL+ ++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 123 RGS 125
G+
Sbjct: 187 FGN 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,169,037
Number of Sequences: 62578
Number of extensions: 938711
Number of successful extensions: 1770
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1757
Number of HSP's gapped (non-prelim): 40
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)