Query 003328
Match_columns 829
No_of_seqs 463 out of 3795
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 21:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-32 8.1E-37 334.6 29.1 204 8-225 55-268 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-30 1E-34 316.0 27.6 518 41-768 68-591 (968)
3 PLN03210 Resistant to P. syrin 99.9 4.1E-21 8.8E-26 236.6 23.9 163 43-224 590-754 (1153)
4 PLN03210 Resistant to P. syrin 99.9 3.9E-21 8.4E-26 236.8 22.2 364 21-496 533-909 (1153)
5 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.5E-25 206.7 -2.5 463 24-673 2-467 (1081)
6 KOG0444 Cytoskeletal regulator 99.8 5.3E-21 1.2E-25 200.7 -6.5 321 17-389 52-376 (1255)
7 KOG4194 Membrane glycoprotein 99.8 7.6E-19 1.7E-23 183.7 7.2 175 21-208 53-234 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.3E-20 5.1E-25 195.9 -4.6 176 17-207 4-185 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.8E-21 6.1E-26 193.3 -15.0 188 21-224 46-235 (565)
10 KOG0472 Leucine-rich repeat pr 99.7 1.3E-20 2.8E-25 188.6 -13.7 154 16-176 64-219 (565)
11 KOG4658 Apoptotic ATPase [Sign 99.7 8.1E-17 1.7E-21 188.2 13.0 160 13-203 516-676 (889)
12 KOG4194 Membrane glycoprotein 99.7 5.5E-18 1.2E-22 177.4 2.9 150 20-174 125-280 (873)
13 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 192.6 -5.1 168 20-208 21-191 (1081)
14 KOG0617 Ras suppressor protein 99.7 2.7E-18 5.8E-23 152.4 -4.3 161 9-176 22-186 (264)
15 KOG0617 Ras suppressor protein 99.6 4.1E-17 8.8E-22 144.9 -5.5 168 31-214 22-192 (264)
16 KOG4341 F-box protein containi 99.4 4.5E-15 9.7E-20 150.6 -7.2 94 292-390 138-231 (483)
17 KOG4658 Apoptotic ATPase [Sign 99.3 8.6E-13 1.9E-17 154.8 6.7 304 19-391 544-863 (889)
18 KOG4341 F-box protein containi 99.3 9.6E-15 2.1E-19 148.2 -8.3 272 452-782 188-462 (483)
19 PRK15370 E3 ubiquitin-protein 99.3 4.2E-12 9E-17 146.8 12.1 164 20-212 178-342 (754)
20 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4.2E-16 140.4 16.4 169 20-224 201-369 (788)
21 PRK15370 E3 ubiquitin-protein 99.3 5.2E-12 1.1E-16 146.0 11.4 180 18-227 197-377 (754)
22 PRK15387 E3 ubiquitin-protein 99.3 3.4E-11 7.4E-16 138.3 14.1 180 10-227 213-392 (788)
23 PF14580 LRR_9: Leucine-rich r 99.1 6.1E-11 1.3E-15 111.6 5.3 126 14-145 13-147 (175)
24 cd00116 LRR_RI Leucine-rich re 99.1 4.9E-11 1.1E-15 127.9 5.3 190 12-208 14-234 (319)
25 KOG4237 Extracellular matrix p 99.1 1.4E-11 3E-16 124.4 -0.1 108 17-128 64-177 (498)
26 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 129.9 -3.3 179 18-214 73-253 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.8E-15 107.8 4.9 130 67-203 16-148 (175)
28 KOG4237 Extracellular matrix p 99.0 1.9E-10 4.2E-15 116.3 1.5 144 25-174 51-199 (498)
29 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-09 2.5E-14 117.2 6.6 199 17-229 48-290 (319)
30 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.6E-15 111.1 1.0 185 18-212 212-416 (490)
31 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.3E-15 123.5 -3.5 187 24-228 54-245 (722)
32 KOG1259 Nischarin, modulator o 98.9 3E-10 6.4E-15 110.6 -1.0 125 19-149 283-410 (490)
33 COG4886 Leucine-rich repeat (L 98.8 9.7E-09 2.1E-13 113.4 6.7 189 24-228 97-288 (394)
34 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.7E-13 112.6 6.2 178 17-211 113-293 (394)
35 KOG3207 Beta-tubulin folding c 98.6 4.3E-09 9.4E-14 108.3 -0.8 212 9-225 109-334 (505)
36 KOG3207 Beta-tubulin folding c 98.6 9.3E-09 2E-13 105.9 -0.3 159 40-210 119-286 (505)
37 PF13855 LRR_8: Leucine rich r 98.4 3.4E-07 7.3E-12 70.7 3.5 59 42-104 1-60 (61)
38 PRK15386 type III secretion pr 98.3 1.3E-06 2.9E-11 92.3 8.4 141 538-759 48-188 (426)
39 KOG1859 Leucine-rich repeat pr 98.3 5.8E-09 1.3E-13 113.3 -9.7 126 71-207 165-291 (1096)
40 KOG2120 SCF ubiquitin ligase, 98.3 3.3E-08 7.1E-13 96.7 -4.1 173 21-204 186-372 (419)
41 PF13855 LRR_8: Leucine rich r 98.3 7E-07 1.5E-11 68.9 3.6 56 71-126 2-60 (61)
42 KOG0531 Protein phosphatase 1, 98.3 9.4E-08 2E-12 105.7 -1.9 124 20-149 72-197 (414)
43 PRK15386 type III secretion pr 98.2 7.4E-07 1.6E-11 94.3 4.3 131 570-781 52-186 (426)
44 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 97.9 9.4 105 71-176 419-528 (623)
45 PLN03150 hypothetical protein; 98.2 3.9E-06 8.4E-11 97.3 9.3 104 94-206 419-526 (623)
46 KOG1909 Ran GTPase-activating 98.2 2.8E-07 6.1E-12 92.7 -0.3 184 19-207 91-310 (382)
47 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.2E-12 92.3 -3.4 85 116-207 186-272 (419)
48 KOG3665 ZYG-1-like serine/thre 98.1 1.4E-06 3.1E-11 100.3 2.8 59 66-125 169-230 (699)
49 PF12799 LRR_4: Leucine Rich r 98.0 8.6E-06 1.9E-10 57.4 4.4 38 71-108 2-39 (44)
50 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.4E-11 97.2 -0.8 174 16-209 91-269 (414)
51 KOG1947 Leucine rich repeat pr 98.0 7.1E-07 1.5E-11 101.7 -3.0 119 264-388 187-308 (482)
52 KOG1947 Leucine rich repeat pr 97.9 5.8E-07 1.3E-11 102.4 -4.6 170 453-673 268-443 (482)
53 KOG3665 ZYG-1-like serine/thre 97.9 7.9E-06 1.7E-10 94.3 3.9 136 69-207 121-262 (699)
54 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.3E-10 54.4 4.3 38 116-154 2-39 (44)
55 KOG1859 Leucine-rich repeat pr 97.8 7E-07 1.5E-11 97.6 -6.4 150 17-176 106-292 (1096)
56 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 70.3 5.4 122 21-148 20-150 (233)
57 KOG1909 Ran GTPase-activating 97.6 4.5E-05 9.7E-10 77.2 3.3 159 17-176 117-311 (382)
58 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.2E-09 67.1 6.4 102 20-125 42-150 (233)
59 KOG4579 Leucine-rich repeat (L 97.5 9.7E-06 2.1E-10 70.6 -2.4 90 67-157 50-141 (177)
60 KOG2982 Uncharacterized conser 97.3 5.6E-05 1.2E-09 74.6 -0.2 196 21-225 46-257 (418)
61 KOG2982 Uncharacterized conser 97.3 5.2E-05 1.1E-09 74.8 -0.5 99 72-173 47-156 (418)
62 KOG4579 Leucine-rich repeat (L 97.2 5.4E-05 1.2E-09 66.1 -1.3 109 21-133 28-141 (177)
63 COG5238 RNA1 Ran GTPase-activa 97.1 0.00049 1.1E-08 67.3 4.1 86 69-155 29-136 (388)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0016 3.4E-08 64.0 3.0 106 92-204 42-152 (260)
65 COG5238 RNA1 Ran GTPase-activa 96.5 0.0088 1.9E-07 58.8 7.8 143 87-230 24-198 (388)
66 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 64.0 1.7 60 67-126 62-127 (260)
67 KOG2123 Uncharacterized conser 96.3 0.00031 6.7E-09 68.9 -3.3 78 41-125 18-98 (388)
68 KOG3864 Uncharacterized conser 95.9 0.0011 2.3E-08 62.4 -1.9 61 721-781 124-185 (221)
69 PF13306 LRR_5: Leucine rich r 95.7 0.036 7.9E-07 50.0 7.2 114 40-164 10-127 (129)
70 KOG2123 Uncharacterized conser 95.5 0.0013 2.7E-08 64.7 -3.1 80 92-173 18-98 (388)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0066 1.4E-07 35.5 0.9 22 116-137 1-22 (22)
72 KOG3864 Uncharacterized conser 95.0 0.0059 1.3E-07 57.6 -0.3 74 534-610 117-190 (221)
73 PF00560 LRR_1: Leucine Rich R 94.4 0.016 3.4E-07 33.9 0.7 20 71-90 1-20 (22)
74 PF13306 LRR_5: Leucine rich r 94.3 0.13 2.7E-06 46.4 6.7 107 60-172 2-112 (129)
75 PF13504 LRR_7: Leucine rich r 92.7 0.076 1.7E-06 28.7 1.4 16 116-131 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 91.7 0.12 2.5E-06 28.0 1.4 16 71-86 2-17 (17)
77 smart00369 LRR_TYP Leucine-ric 86.9 0.56 1.2E-05 28.5 2.1 21 114-134 1-21 (26)
78 smart00370 LRR Leucine-rich re 86.9 0.56 1.2E-05 28.5 2.1 21 114-134 1-21 (26)
79 KOG0473 Leucine-rich repeat pr 85.4 0.028 6.1E-07 54.1 -6.4 84 40-128 40-124 (326)
80 KOG0473 Leucine-rich repeat pr 83.2 0.035 7.7E-07 53.4 -6.7 83 67-149 39-122 (326)
81 smart00367 LRR_CC Leucine-rich 82.2 0.77 1.7E-05 28.0 1.2 18 479-496 1-18 (26)
82 smart00370 LRR Leucine-rich re 81.9 1.3 2.7E-05 26.9 2.1 21 69-89 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 81.9 1.3 2.7E-05 26.9 2.1 21 69-89 1-21 (26)
84 smart00367 LRR_CC Leucine-rich 80.1 0.96 2.1E-05 27.5 1.1 17 747-763 1-17 (26)
85 KOG4308 LRR-containing protein 78.7 0.036 7.9E-07 61.6 -9.7 59 70-128 144-217 (478)
86 KOG4308 LRR-containing protein 61.7 0.31 6.6E-06 54.4 -7.3 158 18-176 113-303 (478)
87 smart00364 LRR_BAC Leucine-ric 56.1 6.9 0.00015 23.8 1.1 17 116-132 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 55.4 9.7 0.00021 23.2 1.7 15 115-129 2-16 (26)
89 PF13516 LRR_6: Leucine Rich r 49.6 8.6 0.00019 22.6 0.9 12 116-127 3-14 (24)
90 smart00368 LRR_RI Leucine rich 33.8 32 0.00069 21.3 1.7 12 71-82 3-14 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-32 Score=334.62 Aligned_cols=204 Identities=24% Similarity=0.356 Sum_probs=168.2
Q ss_pred cccCCccccCC--CCCCcEEEcCCCCCCC-CCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCC
Q 003328 8 ADVEKKMEETI--RKDPIAISLPQRDIQE-LPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFS 83 (829)
Q Consensus 8 ~~~~~~~~~~~--~~~l~~L~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~ 83 (829)
.+.+.|.++.. ..+++.|+++++.+.. ++..+ .+++|++|++++|. ....+|..+|.++++||+|++++|.+.
T Consensus 55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~---~~~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ---LSGPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc---cCCcCChHHhccCCCCCEEECcCCccc
Confidence 46788988753 4689999999998874 44444 89999999999998 456899988889999999999999987
Q ss_pred C-CchhhcCCCCCcEEEccccCCC-Cc-ccccCCCCCcEEEccCCCCc-cchhhhcCCCCCCEEeccCCCCCCccChhhh
Q 003328 84 S-LPSSLGRLINLQTLCLDWCQLE-DV-AAIGQLKKLEILSFRGSDIK-QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVI 159 (829)
Q Consensus 84 ~-lp~~l~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l 159 (829)
. +|. +.+++|++|++++|.+. .+ ..++++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. +
T Consensus 132 ~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l 208 (968)
T PLN00113 132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-L 208 (968)
T ss_pred cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-H
Confidence 5 554 57899999999999987 44 78999999999999999876 78999999999999999999866778887 9
Q ss_pred cCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC-CcCCcc-ccccccEEEEE
Q 003328 160 SKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ-ILPQDW-VSVELQRYKIC 225 (829)
Q Consensus 160 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~ 225 (829)
+++++|++|++++|.+. ......++++++|+.|++++|... .+|..+ .+++|+.|++.
T Consensus 209 ~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLS--------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred cCcCCccEEECcCCccC--------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 99999999999998765 234456778899999999988765 344433 56677777664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.7e-30 Score=316.02 Aligned_cols=518 Identities=17% Similarity=0.105 Sum_probs=316.0
Q ss_pred CCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCC-CCchhhc-CCCCCcEEEccccCCCCcccccCCCCCc
Q 003328 41 CPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFS-SLPSSLG-RLINLQTLCLDWCQLEDVAAIGQLKKLE 118 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lp~~l~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~ 118 (829)
..+++.|+++++. ..+.++.. |..+++|++|++++|++. .+|..+. .+++||+|++++|++...-..+.+.+|+
T Consensus 68 ~~~v~~L~L~~~~---i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 68 SSRVVSIDLSGKN---ISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred CCcEEEEEecCCC---ccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence 3579999999988 34445554 689999999999999987 5888765 9999999999999887553346789999
Q ss_pred EEEccCCCCc-cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCC
Q 003328 119 ILSFRGSDIK-QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKL 197 (829)
Q Consensus 119 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 197 (829)
+|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+. ...+..++++++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L 214 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV--------GQIPRELGQMKSL 214 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc--------CcCChHHcCcCCc
Confidence 9999999887 78999999999999999999866778887 899999999999998765 2345677888999
Q ss_pred cEEEeecCCCC-CcCCcc-ccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccc
Q 003328 198 TTLEIHVWDAQ-ILPQDW-VSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKL 275 (829)
Q Consensus 198 ~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~ 275 (829)
+.|++++|... .+|..+ .+++|+.|++.. +
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~------------------------------------------------n 246 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY------------------------------------------------N 246 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcC------------------------------------------------c
Confidence 99999988765 344433 455666665542 2
Q ss_pred cCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCC-CCCCCCCccEE
Q 003328 276 KGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLT-EDQSFSNLRII 354 (829)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~-~~~~~~~L~~L 354 (829)
.-...+...+ +.+++|++|.++++.-...+ + .....+++|+.|+++++.-... +| ....+++|+.|
T Consensus 247 ~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~---p--~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L 313 (968)
T PLN00113 247 NLTGPIPSSL---GNLKNLQYLFLYQNKLSGPI---P--PSIFSLQKLISLDLSDNSLSGE-----IPELVIQLQNLEIL 313 (968)
T ss_pred eeccccChhH---hCCCCCCEEECcCCeeeccC---c--hhHhhccCcCEEECcCCeeccC-----CChhHcCCCCCcEE
Confidence 2111112222 24555555555554321111 0 0112345555555554432111 11 02345566666
Q ss_pred EEecCCCCccccchHHHHhhcccceEEEecccCcceecccCCCCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcc
Q 003328 355 EVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDK 434 (829)
Q Consensus 355 ~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~ 434 (829)
++.++.-....| ..+..+++|+.|++++|.-...++.. . +....|+.|+++++.-
T Consensus 314 ~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~-l----------------------~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 314 HLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIPKN-L----------------------GKHNNLTVLDLSTNNL 368 (968)
T ss_pred ECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCChH-H----------------------hCCCCCcEEECCCCee
Confidence 665553322222 22344566666666555321111100 0 0012223333332221
Q ss_pred hhhHHhhhcccccccccccCccceEeeccCCCcceeecCCccccCCCccEEeeccCCCcceecccccCCCCCccceeecc
Q 003328 435 IEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVTEK 514 (829)
Q Consensus 435 L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~Li~ 514 (829)
-..+ +.....+++|+.|.+.++.-...++. ....+++|+.|++.+|.--..+| .
T Consensus 369 ~~~~--------p~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p---------~------- 422 (968)
T PLN00113 369 TGEI--------PEGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELP---------S------- 422 (968)
T ss_pred EeeC--------ChhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECC---------h-------
Confidence 1110 11223344555555555432222221 11244555555555543111111 0
Q ss_pred cccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHh
Q 003328 515 EEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRC 594 (829)
Q Consensus 515 ~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~ 594 (829)
.+..+++|+.|+++++. +..... .....+++|+.|++++|..... +|... .
T Consensus 423 ----------------------~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~n~~~~~-~p~~~--~ 473 (968)
T PLN00113 423 ----------------------EFTKLPLVYFLDISNNN-LQGRIN---SRKWDMPSLQMLSLARNKFFGG-LPDSF--G 473 (968)
T ss_pred ----------------------hHhcCCCCCEEECcCCc-ccCccC---hhhccCCCCcEEECcCceeeee-cCccc--c
Confidence 11227788888888854 332211 1122358899999998876654 45433 4
Q ss_pred ccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccCCCccccCCCcCeEEEeCCCCCcccc
Q 003328 595 FNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIEMPVLCSLAIENCTDMETFI 674 (829)
Q Consensus 595 l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~l~ 674 (829)
.++|+.|++++|.--..++.... .+++|++|+++++.-...+ +.....+++|+.|++++|.-...+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~- 539 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLG----------SLSELMQLKLSENKLSGEI---PDELSSCKKLVSLDLSHNQLSGQI- 539 (968)
T ss_pred cccceEEECcCCccCCccChhhh----------hhhccCEEECcCCcceeeC---ChHHcCccCCCEEECCCCcccccC-
Confidence 57899999988864334333222 4788899999887544444 445677888999999887644433
Q ss_pred cCCcccccccCCCCccccchhhhhhhhhhhhhhccccCcccccceeecccccccccCCCCcccccCCCCccccCcccEEe
Q 003328 675 SNSVVHATTDNKEPQKLTSEENFLLVHQVQPLFNEKVGEEAKDCIVFRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVV 754 (829)
Q Consensus 675 ~~~~~p~~l~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~ 754 (829)
|..+.. +++|+.|++++|.-...+|... ..+++|+.|+
T Consensus 540 -----p~~~~~-----------------------------------l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~l~ 577 (968)
T PLN00113 540 -----PASFSE-----------------------------------MPVLSQLDLSQNQLSGEIPKNL--GNVESLVQVN 577 (968)
T ss_pred -----ChhHhC-----------------------------------cccCCEEECCCCcccccCChhH--hcCcccCEEe
Confidence 444433 7899999999987665666543 3478999999
Q ss_pred eccCCcceeecCCC
Q 003328 755 VRQCPTMKIFSQGG 768 (829)
Q Consensus 755 i~~C~~l~~l~~~~ 768 (829)
+++|+-...+|..+
T Consensus 578 ls~N~l~~~~p~~~ 591 (968)
T PLN00113 578 ISHNHLHGSLPSTG 591 (968)
T ss_pred ccCCcceeeCCCcc
Confidence 99998777777643
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.1e-21 Score=236.63 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=99.0
Q ss_pred CCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccC-CCCcccccCCCCCcEEE
Q 003328 43 NLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQ-LEDVAAIGQLKKLEILS 121 (829)
Q Consensus 43 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~-l~~l~~i~~L~~L~~L~ 121 (829)
+||.|.+.++. ...+|..+ ...+|+.|+++++.+..+|..+..+++|++|+++++. +..+..++.+++|++|+
T Consensus 590 ~Lr~L~~~~~~----l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~ 663 (1153)
T PLN03210 590 KLRLLRWDKYP----LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLK 663 (1153)
T ss_pred ccEEEEecCCC----CCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEE
Confidence 46666666665 55566543 4566666666666666666666666667777766653 44555566666677777
Q ss_pred ccCC-CCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEE
Q 003328 122 FRGS-DIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTL 200 (829)
Q Consensus 122 l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 200 (829)
+++| .+..+|..++++++|++|++++|..++.+|.. + ++++|++|++++|... .. +.. ...+|+.|
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L-----~~----~p~--~~~nL~~L 730 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRL-----KS----FPD--ISTNISWL 730 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCc-----cc----ccc--ccCCcCee
Confidence 7665 45566666666677777777666666666654 2 5666666666666432 00 111 12356666
Q ss_pred EeecCCCCCcCCccccccccEEEE
Q 003328 201 EIHVWDAQILPQDWVSVELQRYKI 224 (829)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~L~~L~l 224 (829)
++..+.+..+|....+++|+.|.+
T Consensus 731 ~L~~n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 731 DLDETAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred ecCCCccccccccccccccccccc
Confidence 666666666665555556655544
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.9e-21 Score=236.81 Aligned_cols=364 Identities=24% Similarity=0.302 Sum_probs=218.1
Q ss_pred CCcEEEcCCCCCCCC--CC--ccCCCCCcEEEeecCCCc---ccccccchhhhcCC-CCccEEEecCCCCCCCchhhcCC
Q 003328 21 DPIAISLPQRDIQEL--PE--RLQCPNLQLFLLITKGIA---PVSMQISDLFFEGT-EELKVLSLIGIHFSSLPSSLGRL 92 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l--~~--~~~~~~Lr~L~l~~~~~~---~~~~~lp~~~~~~l-~~Lr~L~L~~~~i~~lp~~l~~l 92 (829)
+++.+++.-..+.++ .. ...+++|+.|.+.++... .....+|..+ ..+ .+||+|++.++.++.+|..+ ..
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 455555544443322 11 126778888877554310 0123456554 343 46888888888888888776 56
Q ss_pred CCCcEEEccccCCCCc-ccccCCCCCcEEEccCC-CCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEc
Q 003328 93 INLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGS-DIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 93 ~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 170 (829)
.+|++|++.++.+..+ ..+..+.+|++|+++++ .++.+| .++.+++|++|++.+|..+..+|.. ++++++|++|++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeC
Confidence 7888888888887777 77778888888888776 466666 4777888888888888777778776 788888888888
Q ss_pred cCCccccccccCCCccchhhhcCCCCCcEEEeecCCC-CCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCC
Q 003328 171 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA-QILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLE 249 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~ 249 (829)
++|... ...+.. .++++|+.|+++++.. ..+|.. ..+|+
T Consensus 689 ~~c~~L-----~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~----------------------------- 728 (1153)
T PLN03210 689 SRCENL-----EILPTG----INLKSLYRLNLSGCSRLKSFPDI--STNIS----------------------------- 728 (1153)
T ss_pred CCCCCc-----CccCCc----CCCCCCCEEeCCCCCCccccccc--cCCcC-----------------------------
Confidence 776543 111111 1566777777776532 222221 22333
Q ss_pred ccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccC--ccccccccccccee
Q 003328 250 NVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVG--RVRCTIFPLLESLS 327 (829)
Q Consensus 250 ~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~--~~~~~~~~~L~~L~ 327 (829)
.|++.+.. +..++. ...+++|++|.+.++.....+..... ......+++|+.|+
T Consensus 729 -------------------~L~L~~n~-i~~lP~----~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 729 -------------------WLDLDETA-IEEFPS----NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred -------------------eeecCCCc-cccccc----cccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 34433322 111111 11355666666655442211100000 00012346777777
Q ss_pred ccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcceecccCCCCCCCcccccc
Q 003328 328 LWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNE 407 (829)
Q Consensus 328 L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~ 407 (829)
+++|+.+..++.. .+.+++|+.|+|.+|.+++.+|... ++++|+.|++++|..+..++.
T Consensus 785 Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~-------------- 843 (1153)
T PLN03210 785 LSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD-------------- 843 (1153)
T ss_pred CCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc--------------
Confidence 7777766554321 4567777888887777777776431 467777777777776654431
Q ss_pred cccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeecCCccccCCCccEEee
Q 003328 408 ITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSL 487 (829)
Q Consensus 408 i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 487 (829)
.+.+|+.|++++. .++.+ +..+..+++|+.|.+.+|++++.++.. ...+++|+.+.+
T Consensus 844 ------------~~~nL~~L~Ls~n-~i~~i--------P~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l 900 (1153)
T PLN03210 844 ------------ISTNISDLNLSRT-GIEEV--------PWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDF 900 (1153)
T ss_pred ------------cccccCEeECCCC-CCccC--------hHHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeec
Confidence 2345666666553 33333 334566788888888888888877653 236778888888
Q ss_pred ccCCCccee
Q 003328 488 THCPNMKTF 496 (829)
Q Consensus 488 ~~C~~l~~~ 496 (829)
++|++++.+
T Consensus 901 ~~C~~L~~~ 909 (1153)
T PLN03210 901 SDCGALTEA 909 (1153)
T ss_pred CCCcccccc
Confidence 888888765
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-20 Score=206.70 Aligned_cols=463 Identities=19% Similarity=0.209 Sum_probs=259.6
Q ss_pred EEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccc
Q 003328 24 AISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDW 102 (829)
Q Consensus 24 ~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~ 102 (829)
+++++.+.++-+|..+ .-..+..|++..|. ....|-++..+.-+|+.|++++|.+..+|..+..+++|+.|+++.
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~----~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNS----LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccc----cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch
Confidence 3566777777777654 33347778887777 444454445666668888888888888888888888888888888
Q ss_pred cCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccccc
Q 003328 103 CQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVE 181 (829)
Q Consensus 103 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 181 (829)
|.+..+ ..++++.+|++|.|.+|.+..+|.++..+++|++|++++|. ...+|.- +..++.+..+..++|..
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~------ 149 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEK------ 149 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchh------
Confidence 888877 78888888888888888888888888888888888888876 6777775 77788888887777611
Q ss_pred CCCccchhhhcCCCCCcEEEeecCCCC-CcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhH
Q 003328 182 GGSNASLAELKGLSKLTTLEIHVWDAQ-ILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGM 260 (829)
Q Consensus 182 ~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~ 260 (829)
+..++... .+.+++..+... .++.++ .++++
T Consensus 150 ------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~--------------------------------------- 181 (1081)
T KOG0618|consen 150 ------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH--------------------------------------- 181 (1081)
T ss_pred ------hhhhcccc-chhhhhhhhhcccchhcch--hhhhe---------------------------------------
Confidence 11222221 344444433321 111111 11111
Q ss_pred HHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcC
Q 003328 261 KMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDS 340 (829)
Q Consensus 261 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 340 (829)
.|++.+..-. .-. +..+++|+.+......- ..+ ...-++|+.|+...++-.+. ..
T Consensus 182 --------~ldLr~N~~~---~~d---ls~~~~l~~l~c~rn~l-s~l--------~~~g~~l~~L~a~~n~l~~~-~~- 236 (1081)
T KOG0618|consen 182 --------QLDLRYNEME---VLD---LSNLANLEVLHCERNQL-SEL--------EISGPSLTALYADHNPLTTL-DV- 236 (1081)
T ss_pred --------eeecccchhh---hhh---hhhccchhhhhhhhccc-ceE--------EecCcchheeeeccCcceee-cc-
Confidence 0111111110 000 11333333333322221 111 11234455555555544321 11
Q ss_pred CCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcceecccCCCCCCCcccccccccCCCCCCCCCC
Q 003328 341 QLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEITADDDAAPKVGI 420 (829)
Q Consensus 341 ~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 420 (829)
...-.+|+.++|+. .+++.+| .+...+++|+.+.+.... +..++.
T Consensus 237 ----~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~--------------------------- 281 (1081)
T KOG0618|consen 237 ----HPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALPL--------------------------- 281 (1081)
T ss_pred ----ccccccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhHH---------------------------
Confidence 12335667777765 3566666 566667777777665432 222211
Q ss_pred CCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeecCCccccCCCccEEeeccCCCcceecccc
Q 003328 421 PGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRI 500 (829)
Q Consensus 421 ~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~ 500 (829)
......+|+.|.+..+ .+..++. ....+.+|+.|++... +|.++|...
T Consensus 282 ----------------------------ri~~~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~N-~L~~lp~~~ 329 (1081)
T KOG0618|consen 282 ----------------------------RISRITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQSN-NLPSLPDNF 329 (1081)
T ss_pred ----------------------------HHhhhhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehhc-cccccchHH
Confidence 1112233333333333 1222221 1113555666666552 444443311
Q ss_pred cCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecC
Q 003328 501 LSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDC 580 (829)
Q Consensus 501 ~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C 580 (829)
+. ..+.+++.+=..|..+...+.. ....++.|+.|.+.+ +.+++- ..+.+.++.+||.|++++.
T Consensus 330 l~-v~~~~l~~ln~s~n~l~~lp~~-----------~e~~~~~Lq~Lylan-N~Ltd~---c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 330 LA-VLNASLNTLNVSSNKLSTLPSY-----------EENNHAALQELYLAN-NHLTDS---CFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred Hh-hhhHHHHHHhhhhccccccccc-----------cchhhHHHHHHHHhc-Cccccc---chhhhccccceeeeeeccc
Confidence 10 1111122220011111111000 011266788888877 444432 1334456689999999987
Q ss_pred CCCccccchhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccCCCccccCCCcC
Q 003328 581 TNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIEMPVLC 660 (829)
Q Consensus 581 ~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~ 660 (829)
+ +.. ||+..++++..||+|+++|. +|+.+|.... .++.|++|... -..|.++ | ....++.|+
T Consensus 394 r-L~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tva----------~~~~L~tL~ah-sN~l~~f---P-e~~~l~qL~ 455 (1081)
T KOG0618|consen 394 R-LNS-FPASKLRKLEELEELNLSGN-KLTTLPDTVA----------NLGRLHTLRAH-SNQLLSF---P-ELAQLPQLK 455 (1081)
T ss_pred c-ccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHHH----------hhhhhHHHhhc-CCceeec---h-hhhhcCcce
Confidence 5 343 78888889999999999995 5888886544 57778887763 3445555 3 578889999
Q ss_pred eEEEeCCCCCccc
Q 003328 661 SLAIENCTDMETF 673 (829)
Q Consensus 661 ~L~i~~C~~L~~l 673 (829)
.+++ +|.+|+.+
T Consensus 456 ~lDl-S~N~L~~~ 467 (1081)
T KOG0618|consen 456 VLDL-SCNNLSEV 467 (1081)
T ss_pred EEec-ccchhhhh
Confidence 9999 77888765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=5.3e-21 Score=200.68 Aligned_cols=321 Identities=17% Similarity=0.209 Sum_probs=209.5
Q ss_pred CCCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 95 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L 95 (829)
..+++|.||++.+|++..+-..+ .++.||.+++..|+. ....+|.++| .++.|.+|||++|++++.|..+.+-+++
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L--KnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL--KNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc--ccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence 45667777777777766555444 677888888877663 2446888875 7899999999999999999999999999
Q ss_pred cEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 96 QTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 96 r~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
-+|+|++|+|..+ +-+-+|..|-+||+++|++..+|+.+.+|.+||+|.+++|. +..+....+-.+++|++|.++++
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccc
Confidence 9999999999888 67788899999999999999999999999999999999887 33332222556777888888887
Q ss_pred ccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc-ccccccEEEEEEccccccCCCCCCCccEEEeccCCccc
Q 003328 174 FSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW-VSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVS 252 (829)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~ 252 (829)
... ....+..+..+.+|+.++++.|++..+|.-+ .+.+|++|+++++.... +..+
T Consensus 208 qRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-------------L~~~---- 263 (1255)
T KOG0444|consen 208 QRT-------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-------------LNMT---- 263 (1255)
T ss_pred cch-------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-------------eecc----
Confidence 654 2334556667778888999998888888764 78888888887554322 1110
Q ss_pred cchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccc
Q 003328 253 TLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLS 332 (829)
Q Consensus 253 ~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~ 332 (829)
.....+++.|+++... ++..+..+. .++.|+.|...+.. +.+ .+.| .+.+.+.+|+.+...+.
T Consensus 264 --------~~~W~~lEtLNlSrNQ-Lt~LP~avc---KL~kL~kLy~n~Nk-L~F-eGiP--SGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 264 --------EGEWENLETLNLSRNQ-LTVLPDAVC---KLTKLTKLYANNNK-LTF-EGIP--SGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred --------HHHHhhhhhhccccch-hccchHHHh---hhHHHHHHHhccCc-ccc-cCCc--cchhhhhhhHHHHhhcc-
Confidence 0012456666665432 222222222 56666666555432 211 0001 01223444454444332
Q ss_pred cchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcc
Q 003328 333 NLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLE 389 (829)
Q Consensus 333 ~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 389 (829)
+++-.+. ....|+.|+.|.+. |..+..+| ..++-++.|+.|++...+++.
T Consensus 327 ~LElVPE----glcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 327 KLELVPE----GLCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccCch----hhhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCcc
Confidence 2222111 13456777777764 45565565 445667778888887777664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=7.6e-19 Score=183.74 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=110.8
Q ss_pred CCcEEEcCCCCCCCCCCc----cCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 21 DPIAISLPQRDIQELPER----LQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
+.+-|+.++..++.+... +-.+.-++|++++|. +..+...+|.++++|+.+++.+|.++.+|.......||+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK----LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccc----cccCcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 456666666666543211 112345667777776 455555556777777777777777777776666666777
Q ss_pred EEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 97 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 97 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
.|+|.+|.|.++ +.+..+..||.|||+.|.|+++|.. +.+=.++++|++++|. ++.+..+.+..+.+|-.|.++.|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC
Confidence 777777777766 6677777777777777777666543 4445667777777765 56655554666667777777766
Q ss_pred ccccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 174 FSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
.+. .-.+..++++++|+.|++..|.+.
T Consensus 208 rit--------tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 208 RIT--------TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred ccc--------ccCHHHhhhcchhhhhhcccccee
Confidence 554 223445566667777777666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.3e-20 Score=195.91 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=109.3
Q ss_pred CCCCCCcEEEcCCCCCC--CCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCC
Q 003328 17 TIRKDPIAISLPQRDIQ--ELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLI 93 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~ 93 (829)
+.++-+|-+++++|+++ .+|... .+++++-|-+.... ...+|+++ +.+.+|..|++.+|++..+...++.++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~----L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK----LEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh----hhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccch
Confidence 34556666666666665 566555 56666666666655 56666664 666666666666666666555666666
Q ss_pred CCcEEEccccCCC--Cc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEc
Q 003328 94 NLQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 94 ~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 170 (829)
.||.+.+..|+++ .+ ..|.+|..|.+||+++|.+++.|..+.+-+++-+|++++|. +..+|.....+|+.|-.|++
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence 6666666666554 34 56666666666666666666666666666666666666655 66666665556666666666
Q ss_pred cCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 171 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
++|... ..+..+..+.+|++|.+++|.+
T Consensus 158 S~NrLe---------~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 158 SNNRLE---------MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ccchhh---------hcCHHHHHHhhhhhhhcCCChh
Confidence 665443 3445555556666666666554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.8e-21 Score=193.31 Aligned_cols=188 Identities=27% Similarity=0.340 Sum_probs=158.4
Q ss_pred CCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~ 99 (829)
.+..+.+++|.++.+.+.. ++..+.+|.+++|. ...+|.++ +++..+..|+.+++.+..+|+.++.+..|+.|+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~----l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK----LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch----hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 4577889999888777666 88889999999998 67888886 889999999999999999999999999999999
Q ss_pred ccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 100 LDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 100 L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
.+++.+..+ ++++.+..|..|+..+|.+..+|.+++++.+|..|++.+++ +..+|+..+ +++.|++|+...+...
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~-- 196 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE-- 196 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh--
Confidence 999999888 89999999999999999999999999999999999999977 788888744 4999999987666443
Q ss_pred cccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEE
Q 003328 179 KVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKI 224 (829)
Q Consensus 179 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 224 (829)
..+.+++.+.+|..|++..|++..+|..-.+..|+++++
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence 567788888899999999998887775445555655543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.3e-20 Score=188.61 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=134.0
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 94 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~ 94 (829)
+..+..+.++.+++|.+.++|+.+ +...+..++.+.|. ...+|+++ ..+..|+.|+.+++.+.++|++++++..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~----ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK----LSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch----HhhccHHH-hhhhhhhhhhccccceeecCchHHHHhh
Confidence 345668899999999999999877 78889999999998 78899886 8899999999999999999999999999
Q ss_pred CcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 95 LQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 95 Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
|..|+..+|.+..+ .+++++.+|..|++.++.++.+|+..-+++.|++||...|- ++.+|++ ++.+.+|+.|++..+
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhc
Confidence 99999999999888 88899999999999999888888776668889999888765 8888888 888888888888887
Q ss_pred ccc
Q 003328 174 FSQ 176 (829)
Q Consensus 174 ~~~ 176 (829)
.+.
T Consensus 217 ki~ 219 (565)
T KOG0472|consen 217 KIR 219 (565)
T ss_pred ccc
Confidence 664
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.69 E-value=8.1e-17 Score=188.22 Aligned_cols=160 Identities=28% Similarity=0.380 Sum_probs=107.2
Q ss_pred ccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCC-CCCCCchhhcC
Q 003328 13 KMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGI-HFSSLPSSLGR 91 (829)
Q Consensus 13 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~lp~~l~~ 91 (829)
.+++.....+|++++.++.+..++...++++|++|.+.+|.. ....++..+|..++.||+||+++| .+.++|++|+.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 444455568899999999998888888888999999988862 256777777888999999999976 35678877666
Q ss_pred CCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEcc
Q 003328 92 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 171 (829)
Q Consensus 92 l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 171 (829)
+.||||| +++++.++.+|.++++|.+|++|++..+..+..+|.. ...|.+||+|.+.
T Consensus 594 Li~LryL----------------------~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 594 LVHLRYL----------------------DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLP 650 (889)
T ss_pred hhhhhcc----------------------cccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEee
Confidence 5555555 5555556666666666666666666665545455432 4456777776665
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEee
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIH 203 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 203 (829)
.... ......+.++.++++|+.+...
T Consensus 651 ~s~~------~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 651 RSAL------SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccc------ccchhhHHhhhcccchhhheee
Confidence 4431 1223445555666666665554
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=5.5e-18 Score=177.38 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCc
Q 003328 20 KDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQ 96 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr 96 (829)
.++++|++.+|.|.++.+.. .++.||+|+++.|. +..+|..-|..-.++++|+|++|+|+.+- ..|..+.+|-
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~----is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL----ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhch----hhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 45777777777666554322 45556666666665 44555444444455555555555555432 2344455555
Q ss_pred EEEccccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 97 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 97 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
+|.|++|+++.+ ..|.+|.+|+.|+|..|.|+.. --.|..|.+||.|.+..|. +..+..+.+..|.++++|++..|
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccc
Confidence 555555555544 4455555555555555544433 1224444445544444433 44444443444444444444444
Q ss_pred c
Q 003328 174 F 174 (829)
Q Consensus 174 ~ 174 (829)
.
T Consensus 280 ~ 280 (873)
T KOG4194|consen 280 R 280 (873)
T ss_pred h
Confidence 3
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-18 Score=192.56 Aligned_cols=168 Identities=21% Similarity=0.235 Sum_probs=133.3
Q ss_pred CCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 20 KDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
+.+.+|++..|.+-..|-.+ +.-+|+.|++++|. ...+|..+ ..+.+|+.|+++.|.|.++|.++.++.+|++
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~----~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ----ISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQY 95 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccc----cccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchh
Confidence 45888889888776655222 44459999999999 78888876 8899999999999999999999999999999
Q ss_pred EEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 98 LCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 98 L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
|+|.++.+..+ .++..+++|++||+++|.+..+|..+..++.+..+..++|..+..++. .. .+++++..+...
T Consensus 96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG 169 (1081)
T ss_pred heeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc
Confidence 99999999988 899999999999999999999999999999999999998844444433 22 666666665443
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
...+.+...+++ .|++..|...
T Consensus 170 --------~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 170 --------GSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred --------cchhcchhhhhe--eeecccchhh
Confidence 223334444444 5788877765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-18 Score=152.38 Aligned_cols=161 Identities=20% Similarity=0.332 Sum_probs=139.3
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS 87 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~ 87 (829)
.+++.++...+.++++|.+++|++..+|+.+ ++.+|++|++++|. +.++|.++ +.+++||.|+++-|++..+|.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq----ie~lp~~i-ssl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ----IEELPTSI-SSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch----hhhcChhh-hhchhhhheecchhhhhcCcc
Confidence 4445555667889999999999999998877 89999999999998 88899886 899999999999888888999
Q ss_pred hhcCCCCCcEEEccccCCC--Cc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCc
Q 003328 88 SLGRLINLQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSR 164 (829)
Q Consensus 88 ~l~~l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 164 (829)
.|+.++-|++||+.+|++. .+ ..|..+..||.|.++.|++.-+|.++++|++||.|.++.+. +-.+|.. ++.++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHH
Confidence 9999999999999999876 45 67778888999999999999999999999999999999876 7788887 899999
Q ss_pred ccEEEccCCccc
Q 003328 165 LEELYMGDSFSQ 176 (829)
Q Consensus 165 L~~L~l~~~~~~ 176 (829)
|++|++.++...
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 999998888664
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.1e-17 Score=144.92 Aligned_cols=168 Identities=23% Similarity=0.352 Sum_probs=151.3
Q ss_pred CCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-c
Q 003328 31 DIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-A 109 (829)
Q Consensus 31 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~ 109 (829)
.+.+++..+++.++..|.+++|. +..+|+.+ ..+++|++|++.+|+++++|.+++.+++||.|++.-|++..+ .
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNK----l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNK----LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cHhhcccccchhhhhhhhcccCc----eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcc
Confidence 34567777789999999999999 77888886 899999999999999999999999999999999999999888 9
Q ss_pred cccCCCCCcEEEccCCCCc--cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccc
Q 003328 110 AIGQLKKLEILSFRGSDIK--QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNAS 187 (829)
Q Consensus 110 ~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 187 (829)
+|+.++.|++||+.+|.+. .+|..+-.++.|+.|++..+. ...+|.+ ++++++|+.|.+.++... ..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~l 165 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SL 165 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hC
Confidence 9999999999999999876 789989899999999999976 8889998 999999999999988665 56
Q ss_pred hhhhcCCCCCcEEEeecCCCCCcCCcc
Q 003328 188 LAELKGLSKLTTLEIHVWDAQILPQDW 214 (829)
Q Consensus 188 ~~~L~~l~~L~~L~l~~~~~~~~~~~~ 214 (829)
+.+++.+..|++|.+.+|.+..+|.++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 677888889999999999998888764
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=4.5e-15 Score=150.56 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHH
Q 003328 292 PRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMA 371 (829)
Q Consensus 292 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~ 371 (829)
..||.|.++||..+.. .+.......+|+++.|.+.+|.++++.....+ ...+++|++|.+..|+.+++.......
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl--a~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL--ARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH--HHhcchhhhhhhcccchhHHHHHHHHH
Confidence 3577777777776553 12222244566666666666666554322212 235677777777777777776554556
Q ss_pred HhhcccceEEEecccCcce
Q 003328 372 KNLLRLQKVEVFFCDDLEM 390 (829)
Q Consensus 372 ~~l~~L~~L~i~~c~~l~~ 390 (829)
..+++|++|.+++|+.+..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HhhhhHHHhhhccCchhhc
Confidence 6677777777777776654
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=8.6e-13 Score=154.75 Aligned_cols=304 Identities=21% Similarity=0.279 Sum_probs=181.0
Q ss_pred CCCCcEEEcCCCC--CCCCCCc--cCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCC
Q 003328 19 RKDPIAISLPQRD--IQELPER--LQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 94 (829)
Q Consensus 19 ~~~l~~L~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~ 94 (829)
.+++++|-+.++. +..++.. ..++.||+|++++|. ...++|..+ +++-+||||+++++.++.+|.++.+++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHh
Confidence 4479999999986 6666653 379999999999998 688999987 9999999999999999999999999999
Q ss_pred CcEEEccccC-CCCc-ccccCCCCCcEEEccCCCCcc---chhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEE
Q 003328 95 LQTLCLDWCQ-LEDV-AAIGQLKKLEILSFRGSDIKQ---LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELY 169 (829)
Q Consensus 95 Lr~L~L~~~~-l~~l-~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 169 (829)
|.+|++..+. +..+ ..+..|.+||+|.+....... .-..+.+|.+|+.+....... .+-.. +..+..|+.+.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~~ 696 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSLL 696 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHHh
Confidence 9999999885 5555 555669999999998765332 223344555555555433221 11111 23333443222
Q ss_pred ccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCC
Q 003328 170 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLE 249 (829)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~ 249 (829)
..-.... ......++.+..+.+|+.|.+..+....+... |.......
T Consensus 697 ~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-------------------~~~~~~~~--------- 743 (889)
T KOG4658|consen 697 QSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIE-------------------WEESLIVL--------- 743 (889)
T ss_pred Hhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhcc-------------------cccccchh---------
Confidence 1111000 11234455566666677766665554322110 11000000
Q ss_pred ccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcc-----ccccccccc
Q 003328 250 NVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRV-----RCTIFPLLE 324 (829)
Q Consensus 250 ~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~-----~~~~~~~L~ 324 (829)
..++++..+.+.+|....+.... .-.|+|+.|.+..|..++.+.+...-. ...+|.+++
T Consensus 744 ------------~~f~~l~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 744 ------------LCFPNLSKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred ------------hhHHHHHHHHhhccccccccchh----hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 01334444445555544432221 145677777777777666543211100 023455555
Q ss_pred ce-eccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecc-cCccee
Q 003328 325 SL-SLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFC-DDLEMM 391 (829)
Q Consensus 325 ~L-~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c-~~l~~~ 391 (829)
.+ .+.+.+.+..+....+ .++.|+.+.+..||++.. +|.+.++.+.+| ..+...
T Consensus 808 ~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred cceeeecCCCCceeEeccc----CccchhheehhcCccccc---------Cccccccceeccccceeec
Confidence 55 3555555444433222 355588888888888876 466777788876 444443
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=9.6e-15 Score=148.17 Aligned_cols=272 Identities=18% Similarity=0.163 Sum_probs=145.3
Q ss_pred ccCccceEeeccCCCcceeecCCccccCCCccEEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccch
Q 003328 452 AFGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNST 530 (829)
Q Consensus 452 ~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~ 530 (829)
.+++|+.+.+..|+++++.........|++|++|.++.|+.++.-.......+... ++++ ..+|.++..-.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~-l~~~~~kGC~e~~le~------- 259 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE-LEKLSLKGCLELELEA------- 259 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh-hhhhhhcccccccHHH-------
Confidence 35555555566666655555443334566666666666666654211111111111 2233 33443321000
Q ss_pred hhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchh
Q 003328 531 IQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLE 610 (829)
Q Consensus 531 ~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~ 610 (829)
......+.+-+.++++..|..+++....... ..+..|+.|..++|.++++.....+.+++++|+.|.+.+|..+.
T Consensus 260 ---l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~--~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 260 ---LLKAAAYCLEILKLNLQHCNQLTDEDLWLIA--CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred ---HHHHhccChHhhccchhhhccccchHHHHHh--hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 0000011344556666677666654211111 12467788888888877775455555677888888888887655
Q ss_pred hhhccCccccccccccccccccceeecCCCCCcceeccCCCccccCCCcCeEEEeCCCCCcccccCCcccccccCCCCcc
Q 003328 611 EVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIEMPVLCSLAIENCTDMETFISNSVVHATTDNKEPQK 690 (829)
Q Consensus 611 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~p~~l~~~~~~~ 690 (829)
+.-- ...+...+.|+.+++.+|...++- .-.....++|.|+.+.++.|..++... +.
T Consensus 335 d~~f--------t~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~g--------i~------ 391 (483)
T KOG4341|consen 335 DRGF--------TMLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEG--------IR------ 391 (483)
T ss_pred hhhh--------hhhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhh--------hh------
Confidence 4211 011114667777777777655432 001114567777777777776665430 00
Q ss_pred ccchhhhhhhhhhhhhhccccCcccccceeecccccccccCCCCcccccCCCCccccCcccEEeeccCCcceeecC--CC
Q 003328 691 LTSEENFLLVHQVQPLFNEKVGEEAKDCIVFRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVVVRQCPTMKIFSQ--GG 768 (829)
Q Consensus 691 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l~~--~~ 768 (829)
.+ .........|+.+++.+||.+++-....+ ..+++|+++++++|..+++-+. .-
T Consensus 392 --------~l--------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 392 --------HL--------------SSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred --------hh--------------hhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHH
Confidence 00 00011256778888888888877554433 3578888888888888775332 34
Q ss_pred CCCCCceeeeccCC
Q 003328 769 VDAPKLNKVKPTEE 782 (829)
Q Consensus 769 ~~~p~L~~l~i~~~ 782 (829)
.++|+++..-..+-
T Consensus 449 ~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 449 THLPNIKVHAYFAP 462 (483)
T ss_pred hhCccceehhhccC
Confidence 66777776655543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=4.2e-12 Score=146.77 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=114.4
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 99 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~ 99 (829)
.+.+.|.+.++++..+|..+ .++|++|++++|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~----LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNE----LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCC----CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 45778888888888888654 2478888888887 667887653 478888888888888887654 3788888
Q ss_pred ccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 100 LDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 100 L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
+++|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. +. .+|++|++++|.+.
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt-- 317 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT-- 317 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc--
Confidence 888888777 4443 478888888888888887654 478888888875 6667654 32 46777777776553
Q ss_pred cccCCCccchhhhcCCCCCcEEEeecCCCCCcCC
Q 003328 179 KVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ 212 (829)
Q Consensus 179 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 212 (829)
.....+ .++|+.|++..|.+..+|.
T Consensus 318 -------~LP~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 318 -------ALPETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred -------cCCccc--cccceeccccCCccccCCh
Confidence 011111 1356677777666655543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=1.9e-11 Score=140.35 Aligned_cols=169 Identities=21% Similarity=0.231 Sum_probs=125.8
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 99 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~ 99 (829)
.+-..|+++.+.+..+|..+. ++|+.|.+.+|. +..+|. ..++|++|++++|+++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~----Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN----LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCc----CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceee
Confidence 346789999999999988653 479999999988 677774 367899999999999988853 46889999
Q ss_pred ccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccc
Q 003328 100 LDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 100 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 179 (829)
+++|.+..+.. -..+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. ..+|+.|++++|.+.
T Consensus 269 Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~--- 335 (788)
T PRK15387 269 IFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT--- 335 (788)
T ss_pred ccCCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCccc---
Confidence 99998887732 235788999999999988863 5789999999986 6777652 245777888877654
Q ss_pred ccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEE
Q 003328 180 VEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKI 224 (829)
Q Consensus 180 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 224 (829)
. +..+ ..+|+.|+++.|.+..+|.. ..+|+.|++
T Consensus 336 ---~----LP~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~L 369 (788)
T PRK15387 336 ---S----LPTL--PSGLQELSVSDNQLASLPTL--PSELYKLWA 369 (788)
T ss_pred ---c----cccc--ccccceEecCCCccCCCCCC--Ccccceehh
Confidence 1 1111 13788999999888877653 245555544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=5.2e-12 Score=146.00 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=143.3
Q ss_pred CCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 18 IRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
.+++++.|++++|.+..+|... .++|++|++++|. +..+|..+ ..+|+.|++++|.+..+|..+. .+|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~----LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ----LTSIPATL---PDTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc----cccCChhh---hccccEEECcCCccCcCChhHh--CCCCE
Confidence 4578999999999999998765 3589999999998 67888764 3479999999999999998775 58999
Q ss_pred EEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 98 LCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 98 L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
|++++|++..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + ..+|+.|++++|.+.
T Consensus 267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 267 LDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALT 338 (754)
T ss_pred EECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccc
Confidence 99999999887 5454 589999999999999987654 579999999987 7778764 3 368999999988764
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEc
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIG 227 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 227 (829)
. ....+ .++|+.|+++.|.+..+|..+ .++|+.|+++.+
T Consensus 339 ------~---LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N 377 (754)
T PRK15370 339 ------S---LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRN 377 (754)
T ss_pred ------c---CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCC
Confidence 1 11222 258999999999988777654 357787777543
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=3.4e-11 Score=138.32 Aligned_cols=180 Identities=19% Similarity=0.157 Sum_probs=132.4
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL 89 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l 89 (829)
+...|. ..+++++.|++.+|.++.+|.. .++|++|++++|. +..+|. ..++|+.|++++|.++.+|...
T Consensus 213 LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~----LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp 281 (788)
T PRK15387 213 LTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ----LTSLPV----LPPGLLELSIFSNPLTHLPALP 281 (788)
T ss_pred CCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc----cCcccC----cccccceeeccCCchhhhhhch
Confidence 334443 2345899999999999999864 5799999999998 667774 2468999999999998887643
Q ss_pred cCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEE
Q 003328 90 GRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELY 169 (829)
Q Consensus 90 ~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 169 (829)
.+|+.|++++|+++.+.. .+.+|++|++++|.++.+|... .+|+.|++.+|. +..+|. + ..+|++|+
T Consensus 282 ---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~Ld 348 (788)
T PRK15387 282 ---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQELS 348 (788)
T ss_pred ---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--ccccceEe
Confidence 568899999999887732 2468999999999999887633 457778888876 667774 2 25788999
Q ss_pred ccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEc
Q 003328 170 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIG 227 (829)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 227 (829)
+++|.+. ..+ .+ ..+|+.|+++.|.+..+|.. ..+|+.|+++.+
T Consensus 349 LS~N~Ls------~LP----~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 349 VSDNQLA------SLP----TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 392 (788)
T ss_pred cCCCccC------CCC----CC--CcccceehhhccccccCccc--ccccceEEecCC
Confidence 9988765 111 11 23677778888888777754 356777777543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.1e-11 Score=111.59 Aligned_cols=126 Identities=24% Similarity=0.284 Sum_probs=35.9
Q ss_pred cccCCCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh-cC
Q 003328 14 MEETIRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GR 91 (829)
Q Consensus 14 ~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l-~~ 91 (829)
++...+.++|.|++.++.|+.+.... .+.+|++|++++|. +..+.. +..+++|++|++++|+|+.++..+ ..
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~----I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ----ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS------S--TT------TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCC----CccccC--ccChhhhhhcccCCCCCCccccchHHh
Confidence 33344445666666666666554433 45566666666666 455543 356666666666666666665444 24
Q ss_pred CCCCcEEEccccCCCCc---ccccCCCCCcEEEccCCCCccchh----hhcCCCCCCEEec
Q 003328 92 LINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQLPL----EIGQLTRLQLLDL 145 (829)
Q Consensus 92 l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l 145 (829)
+++|++|++++|++.++ ..+..+++|++|++.+|.+...+. -|..+++|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66666666666665533 455556666666666665543322 2444444444443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=4.9e-11 Score=127.87 Aligned_cols=190 Identities=19% Similarity=0.158 Sum_probs=111.3
Q ss_pred Ccccc-CCCCCCcEEEcCCCCCC-----CCCCcc-CCCCCcEEEeecCCCc---ccccccchhhhcCCCCccEEEecCCC
Q 003328 12 KKMEE-TIRKDPIAISLPQRDIQ-----ELPERL-QCPNLQLFLLITKGIA---PVSMQISDLFFEGTEELKVLSLIGIH 81 (829)
Q Consensus 12 ~~~~~-~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~---~~~~~lp~~~~~~l~~Lr~L~L~~~~ 81 (829)
.|..+ ....+++.+++.++.+. .++..+ ..++++++++.++... .....++. .+..+++|++|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCC
Confidence 34433 34556888888888763 233333 5666788888776622 00112222 34667788888888777
Q ss_pred CCC-CchhhcCCC---CCcEEEccccCCCC-----c-ccccCC-CCCcEEEccCCCCc-----cchhhhcCCCCCCEEec
Q 003328 82 FSS-LPSSLGRLI---NLQTLCLDWCQLED-----V-AAIGQL-KKLEILSFRGSDIK-----QLPLEIGQLTRLQLLDL 145 (829)
Q Consensus 82 i~~-lp~~l~~l~---~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l 145 (829)
+.. .+..+..+. +|++|++++|++.. + ..+..+ .+|+.|++++|.++ .++..+..+.+|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 653 344443333 38888888777652 2 455666 77888888887766 34455666777888888
Q ss_pred cCCCCCC-----ccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 146 SNCSSLV-----VIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 146 ~~~~~l~-----~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
++|. ++ .++.. +..+++|++|++++|.+.. .........+..+++|+.|+++++.+.
T Consensus 173 ~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~----~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 173 ANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGLTD----EGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred cCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCccCh----HHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 7765 33 12222 4455677777777775530 000112233455667777777766543
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-11 Score=124.40 Aligned_cols=108 Identities=26% Similarity=0.372 Sum_probs=68.5
Q ss_pred CCCCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecC-CCCCCCchh-hcCC
Q 003328 17 TIRKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIG-IHFSSLPSS-LGRL 92 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~-~~i~~lp~~-l~~l 92 (829)
..++....+.|..|.|+.+|+.. .+++||.|++++|. +..|-+..|.+++.|..|-+.+ |+|+.+|.. |+.+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45677888888888888888654 78888888888888 5666555677777776666655 677776653 4555
Q ss_pred CCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCc
Q 003328 93 INLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIK 128 (829)
Q Consensus 93 ~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~ 128 (829)
..|+-|.+.-|++.-+ ..+..|++|+.|.+..|.+.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 5555555554444433 44444444444444444333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.4e-11 Score=129.88 Aligned_cols=179 Identities=23% Similarity=0.278 Sum_probs=155.5
Q ss_pred CCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 18 IRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
.+......+++.|++.++|... .+..|..+.+..|. +..+|..+ .++..|.+|+|+.|++..+|..++.|+ |+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~----~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC----IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LK 146 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhcc----ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ce
Confidence 3456677889999999998766 67788999998888 78889886 899999999999999999999998887 99
Q ss_pred EEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcc
Q 003328 97 TLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 97 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
+|.+++|+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|++..|. +..+|.. +. --.|..|+++.|++
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKI 223 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCce
Confidence 999999999998 89998999999999999999999999999999999999977 7888987 66 44588999998877
Q ss_pred ccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc
Q 003328 176 QWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW 214 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~ 214 (829)
. ..+..+.+|++|++|.|.+|.+..=|..+
T Consensus 224 s---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 224 S---------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred e---------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 5 56677888999999999999887666554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.2e-10 Score=107.83 Aligned_cols=130 Identities=24% Similarity=0.294 Sum_probs=37.1
Q ss_pred cCCCCccEEEecCCCCCCCchhhc-CCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhh-cCCCCCCEEe
Q 003328 67 EGTEELKVLSLIGIHFSSLPSSLG-RLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEI-GQLTRLQLLD 144 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~~i~~lp~~l~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 144 (829)
.+..++|.|+|.++.|+.+. .++ .+.+|+.|++++|.++.++.+..+.+|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34445566666666555542 343 35566666666666666655666666666666666666554443 2456666666
Q ss_pred ccCCCCCCccCh-hhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEee
Q 003328 145 LSNCSSLVVIAP-NVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIH 203 (829)
Q Consensus 145 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 203 (829)
+++|. +.++.. ..++.+++|++|++.+|.+. ........-+..+++|+.||-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-----~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-----EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG-----GSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc-----chhhHHHHHHHHcChhheeCCE
Confidence 66554 322211 11555666666666666554 2223333334445555555443
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=1.9e-10 Score=116.29 Aligned_cols=144 Identities=20% Similarity=0.254 Sum_probs=120.2
Q ss_pred EEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCCCCcEEEccc-
Q 003328 25 ISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDW- 102 (829)
Q Consensus 25 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L~~- 102 (829)
++-++.+++++|..+-. ....+.+..|. +..+|+.+|+.+++||.|||+.|.|+. -|+.|..+..|-.|.+-+
T Consensus 51 VdCr~~GL~eVP~~LP~-~tveirLdqN~----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCcccCCC-cceEEEeccCC----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 44455677788875522 45678999998 899999999999999999999999998 578899999988888877
Q ss_pred cCCCCc--ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCc
Q 003328 103 CQLEDV--AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 103 ~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 174 (829)
|+|+++ ..|++|..|+-|.+.-+++.-++ +.+..|++|..|.+..+. +..++.+.+..+..++++.+..+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 789998 89999999999999999988665 458899999999999976 778887657788888888776554
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.2e-09 Score=117.20 Aligned_cols=199 Identities=22% Similarity=0.211 Sum_probs=132.9
Q ss_pred CCCCCCcEEEcCCCCCCCCC-------Ccc-CCCCCcEEEeecCCCcccccccchhhhcCCC---CccEEEecCCCCCC-
Q 003328 17 TIRKDPIAISLPQRDIQELP-------ERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTE---ELKVLSLIGIHFSS- 84 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~-------~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~---~Lr~L~L~~~~i~~- 84 (829)
...+++++++++++.+..++ ..+ .+++|+.|++++|. .....+.. |..+. +|++|++++|++..
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA---LGPDGCGV-LESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC---CChhHHHH-HHHHhccCcccEEEeeCCccchH
Confidence 34567899999888765322 122 57799999999888 22223322 34444 49999999988762
Q ss_pred ----CchhhcCC-CCCcEEEccccCCC-----Cc-ccccCCCCCcEEEccCCCCc-----cchhhhcCCCCCCEEeccCC
Q 003328 85 ----LPSSLGRL-INLQTLCLDWCQLE-----DV-AAIGQLKKLEILSFRGSDIK-----QLPLEIGQLTRLQLLDLSNC 148 (829)
Q Consensus 85 ----lp~~l~~l-~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 148 (829)
+...+..+ ++|+.|++++|.++ .+ ..+..+.+|++|++++|.++ .++..+..+++|++|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 44556677 88999999999877 23 56777888999999998876 34555667789999999988
Q ss_pred CCCCc-----cChhhhcCCCcccEEEccCCccccccccCCCccchhhhc-----CCCCCcEEEeecCCCCCc-----CCc
Q 003328 149 SSLVV-----IAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELK-----GLSKLTTLEIHVWDAQIL-----PQD 213 (829)
Q Consensus 149 ~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-----~l~~L~~L~l~~~~~~~~-----~~~ 213 (829)
. +.. ++.. +.++++|++|++++|.+. ...+..+. ..+.|+.|++.++.+... ...
T Consensus 204 ~-i~~~~~~~l~~~-~~~~~~L~~L~ls~n~l~--------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 204 G-LTDEGASALAET-LASLKSLEVLNLGDNNLT--------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred c-cChHHHHHHHHH-hcccCCCCEEecCCCcCc--------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 6 332 2222 567888999999988664 11122211 246899999998876421 111
Q ss_pred -cccccccEEEEEEccc
Q 003328 214 -WVSVELQRYKICIGEA 229 (829)
Q Consensus 214 -~~~~~L~~L~l~~~~~ 229 (829)
..+++|+.+++..+..
T Consensus 274 ~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 274 LAEKESLLELDLRGNKF 290 (319)
T ss_pred HhcCCCccEEECCCCCC
Confidence 1346788888765443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.6e-10 Score=111.05 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=131.8
Q ss_pred CCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchh-------------------hhcCCCCccEEEe
Q 003328 18 IRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDL-------------------FFEGTEELKVLSL 77 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~-------------------~~~~l~~Lr~L~L 77 (829)
...+++.+-++.++-..+.... .-|.|+++.+.+........-+|.. .....+.|..+||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 3456666666666544444332 3355666666543311101111111 0234567889999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChh
Q 003328 78 IGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPN 157 (829)
Q Consensus 78 ~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 157 (829)
++|.|+.+-+++.-.+.+|.|+++.|++..+..+..|++|++||+++|.++++...-.+|-|.+.|.+.+|. +..+..
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG- 369 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG- 369 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-
Confidence 999999888888888999999999999988866889999999999999888776666688889999999876 677664
Q ss_pred hhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC
Q 003328 158 VISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ 212 (829)
Q Consensus 158 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 212 (829)
++++-+|..|++++|.+. .-.....+++++.|+.+.+.+|.+..+++
T Consensus 370 -L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 -LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 888999999999988775 22345667788888888888887765543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.1e-10 Score=123.47 Aligned_cols=187 Identities=21% Similarity=0.270 Sum_probs=159.1
Q ss_pred EEEcCCCCCCCCCCcc---CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEc
Q 003328 24 AISLPQRDIQELPERL---QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL 100 (829)
Q Consensus 24 ~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L 100 (829)
.|.|++-.+.+||... .+.--...+++.|. ...+|..+ ..+..|..+.+..|.+..+|..+..+..|.+|+|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR----~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR----FSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDL 128 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc----cccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhh
Confidence 4566777777777432 44445678889998 67889885 7888999999999999999999999999999999
Q ss_pred cccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccc
Q 003328 101 DWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 101 ~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 179 (829)
+.|.+..+ ..++.|. |++|-+++|+++.+|.+|+.+..|.+|+.+.|. +..+|.. ++.+.+|+.|++..|...
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~--- 202 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE--- 202 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh---
Confidence 99999988 7787775 999999999999999999999999999999987 8889987 999999999999888665
Q ss_pred ccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc-ccccccEEEEEEcc
Q 003328 180 VEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW-VSVELQRYKICIGE 228 (829)
Q Consensus 180 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 228 (829)
..+.++..|+ |..||+++|++..+|-.+ .+..|+.|.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 5566777665 899999999999999886 78889988776444
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=3e-10 Score=110.62 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=87.0
Q ss_pred CCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 19 RKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
++.++.+++++|.|..+..+. -.|++|.|++++|. +..+.. +..+.+|..|||++|.++++-..-.++-|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~----i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR----IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc----eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 346777777777777776655 46777777777777 444443 36677777777777776665444456667777
Q ss_pred EEccccCCCCcccccCCCCCcEEEccCCCCccch--hhhcCCCCCCEEeccCCC
Q 003328 98 LCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLP--LEIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 98 L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 149 (829)
|.|++|.+++++++++|++|.+||+++|+|..+. .+||+|+-|+++.+.+|.
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7777777777777777777777777777776553 357777777777776665
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=9.7e-09 Score=113.42 Aligned_cols=189 Identities=26% Similarity=0.331 Sum_probs=137.1
Q ss_pred EEEcCCCCC-CCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCC-CccEEEecCCCCCCCchhhcCCCCCcEEEcc
Q 003328 24 AISLPQRDI-QELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTE-ELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 101 (829)
Q Consensus 24 ~L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~-~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~ 101 (829)
.+....+.+ .........+.++.|.+.++. +.+++... ..++ +|+.|+++++.+..+|..++.+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~----i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN----ITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc----cccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccC
Confidence 456666655 233333356778888888887 67777654 4553 8888888888888887778888888888888
Q ss_pred ccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccc
Q 003328 102 WCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKV 180 (829)
Q Consensus 102 ~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 180 (829)
+|.+.++ ...+.+.+|+.|+++++.+..+|..++.+.+|++|.+.++.... .+.. +.++.++..+.+..+...
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~~---- 245 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKLE---- 245 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCceee----
Confidence 8888888 55558888888888888888888877777788888888875233 3333 677888888776666543
Q ss_pred cCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEcc
Q 003328 181 EGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGE 228 (829)
Q Consensus 181 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 228 (829)
..+..++.+..++.|+++.+.+..++......+++.+++.+..
T Consensus 246 -----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 246 -----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred -----eccchhccccccceeccccccccccccccccCccCEEeccCcc
Confidence 2245566777788888888888887775577788888776443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.2e-08 Score=112.60 Aligned_cols=178 Identities=25% Similarity=0.287 Sum_probs=151.1
Q ss_pred CCCCCCcEEEcCCCCCCCCCCccC-CC-CCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPERLQ-CP-NLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 94 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~~-~~-~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~ 94 (829)
...+.++.+++.++.+.++++... .+ +|+.|++++|. +..+|..+ ..++.|+.|++++|++..+|...+....
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~----i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK----IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc----hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhh
Confidence 344679999999999999998774 43 89999999999 78886554 8999999999999999999988889999
Q ss_pred CcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 95 LQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 95 Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
|+.|+++++.+..+ ..++.+.+|++|.++++.+...+..+.++.++..+.+.++. +..++.. ++.+.+++.|+++++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccc
Confidence 99999999999999 66678888999999999877888889999999999987766 5554554 899999999999998
Q ss_pred ccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 174 FSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
.+. .+..++.+.+++.|+++++.....+
T Consensus 266 ~i~----------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 266 QIS----------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccc----------ccccccccCccCEEeccCccccccc
Confidence 775 2333778889999999988775544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.3e-09 Score=108.26 Aligned_cols=212 Identities=21% Similarity=0.132 Sum_probs=142.6
Q ss_pred ccCCcccc-CCCCCCcEEEcCCCCCCCCCC--cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC
Q 003328 9 DVEKKMEE-TIRKDPIAISLPQRDIQELPE--RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS 84 (829)
Q Consensus 9 ~~~~~~~~-~~~~~l~~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~ 84 (829)
++++..+. ...++||.+++.++.+...+. .. .|+++|.|++++|-.. -......+...+++|+.|+++.|++..
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccC
Confidence 44443332 467889999999998876663 33 7999999999998721 111223456889999999999998765
Q ss_pred Cchhh--cCCCCCcEEEccccCCC--Cc-ccccCCCCCcEEEccCC-CCccchhhhcCCCCCCEEeccCCCCCCccC-hh
Q 003328 85 LPSSL--GRLINLQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGS-DIKQLPLEIGQLTRLQLLDLSNCSSLVVIA-PN 157 (829)
Q Consensus 85 lp~~l--~~l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~ 157 (829)
..++. ..+.||+.|.+++|.++ ++ .....+++|..|++.+| .+..--.+...+..|+.|++++|..+ +.+ ..
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~ 265 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY 265 (505)
T ss_pred CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc
Confidence 33332 36789999999999877 55 67778899999999998 33322223345788999999998743 333 11
Q ss_pred hhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc---cccccccEEEEE
Q 003328 158 VISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD---WVSVELQRYKIC 225 (829)
Q Consensus 158 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~ 225 (829)
.++.++.|+.|+++.+.+..-. .............++|+.|++..|.+.+.+.. ...++|++|.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~--~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIA--EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccchhhhhccccCcchhc--CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 2788999999999888764100 01111223344677899999998887655432 245666666654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.3e-09 Score=105.87 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=110.6
Q ss_pred CCCCCcEEEeecCCCcccccccch-hhhcCCCCccEEEecCCCCCC---CchhhcCCCCCcEEEccccCCCCc---cccc
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISD-LFFEGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV---AAIG 112 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~-~~~~~l~~Lr~L~L~~~~i~~---lp~~l~~l~~Lr~L~L~~~~l~~l---~~i~ 112 (829)
++++||...+.++. ....+. .....++++|.|||++|-+.+ +-.-...+++|+.|+++.|++... ..-.
T Consensus 119 n~kkL~~IsLdn~~----V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYR----VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hHHhhhheeecCcc----ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 78889999998877 444442 234788999999999886554 444557889999999999987644 2334
Q ss_pred CCCCCcEEEccCCCCc--cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhh
Q 003328 113 QLKKLEILSFRGSDIK--QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAE 190 (829)
Q Consensus 113 ~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 190 (829)
.+.+|+.|.++.|+++ .+-......++|..|++.+|..+...... -.-+..|++|++++|.+. .......
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-------~~~~~~~ 266 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-------DFDQGYK 266 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-------ccccccc
Confidence 6788899999999877 34444556788888988887533222222 355778888888888765 2233455
Q ss_pred hcCCCCCcEEEeecCCCCCc
Q 003328 191 LKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 191 L~~l~~L~~L~l~~~~~~~~ 210 (829)
.+.++.|+.|+++.+++..+
T Consensus 267 ~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cccccchhhhhccccCcchh
Confidence 66777788888887776543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=3.4e-07 Score=70.67 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEccccC
Q 003328 42 PNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQ 104 (829)
Q Consensus 42 ~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~ 104 (829)
++|++|++++|. +..+|...|.++++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~----l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK----LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST----ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC----CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666665 556665556666666666666666665443 44556666666665554
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.3e-06 Score=92.35 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=88.9
Q ss_pred ccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhccCc
Q 003328 538 MIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEE 617 (829)
Q Consensus 538 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~ 617 (829)
+..+..++.|+|++| .+++++. .+++|++|.+++|.+++. +|..+ .++|++|.|.+|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-------LP~sLtsL~Lsnc~nLts-LP~~L---P~nLe~L~Ls~Cs~L~s------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-------LPNELTEITIENCNNLTT-LPGSI---PEGLEKLTVCHCPEISG------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-------CCCCCcEEEccCCCCccc-CCchh---hhhhhheEccCcccccc------
Confidence 334688889999988 6777751 236789999988888876 56533 36788888888876654
Q ss_pred cccccccccccccccceeecCCCCCcceeccCCCccccCCCcCeEEEeCCCCCcccccCCcccccccCCCCccccchhhh
Q 003328 618 LNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIEMPVLCSLAIENCTDMETFISNSVVHATTDNKEPQKLTSEENF 697 (829)
Q Consensus 618 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~p~~l~~~~~~~~~~~~~~ 697 (829)
.+++|+.|++. +..+..+ ....++|+.|.+.++...... ..|.
T Consensus 110 ----------LP~sLe~L~L~-~n~~~~L------~~LPssLk~L~I~~~n~~~~~----~lp~---------------- 152 (426)
T PRK15386 110 ----------LPESVRSLEIK-GSATDSI------KNVPNGLTSLSINSYNPENQA----RIDN---------------- 152 (426)
T ss_pred ----------cccccceEEeC-CCCCccc------ccCcchHhheecccccccccc----cccc----------------
Confidence 35667777764 3332222 112346677776443211100 0010
Q ss_pred hhhhhhhhhhccccCcccccceeecccccccccCCCCcccccCCCCccccCcccEEeeccCC
Q 003328 698 LLVHQVQPLFNEKVGEEAKDCIVFRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVVVRQCP 759 (829)
Q Consensus 698 ~~l~~L~~L~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~ 759 (829)
..+++|+.|.+.+|..+. +| +.+| .+|+.|.+..+.
T Consensus 153 ---------------------~LPsSLk~L~Is~c~~i~-LP-~~LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 153 ---------------------LISPSLKTLSLTGCSNII-LP-EKLP---ESLQSITLHIEQ 188 (426)
T ss_pred ---------------------ccCCcccEEEecCCCccc-Cc-cccc---ccCcEEEecccc
Confidence 125789999999998664 34 3456 789999987753
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=5.8e-09 Score=113.35 Aligned_cols=126 Identities=24% Similarity=0.257 Sum_probs=103.5
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCC
Q 003328 71 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 149 (829)
.|.+-+.++|++..+-.++.-+++||.|+|+.|++.++..+..+.+|++||+++|.++.+|.- ...+ +|+.|++++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 566777778888778788888999999999999999998999999999999999999988753 2233 39999999987
Q ss_pred CCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 150 SLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 150 ~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
++.+-. +.+|++|++|++++|.+. ....+.-|..+..|+.|.+.+|.+
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 777755 899999999999998765 334566677777888889988765
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.3e-08 Score=96.74 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=102.8
Q ss_pred CCcEEEcCCCCCC--CCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCC-CCCC--CchhhcCCCC
Q 003328 21 DPIAISLPQRDIQ--ELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGI-HFSS--LPSSLGRLIN 94 (829)
Q Consensus 21 ~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~-~i~~--lp~~l~~l~~ 94 (829)
++++++++...|+ .+...+ .|.+|+-|.+.|+. ....+-..+ .+-.+|+.|+++++ .+++ +--.+..|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~---LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR---LDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc---cCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhh
Confidence 4677777766665 232223 57777777777776 333444443 66677777777776 3554 2234567777
Q ss_pred CcEEEccccCCC-C-c-ccccCC-CCCcEEEccCCC----CccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCccc
Q 003328 95 LQTLCLDWCQLE-D-V-AAIGQL-KKLEILSFRGSD----IKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLE 166 (829)
Q Consensus 95 Lr~L~L~~~~l~-~-l-~~i~~L-~~L~~L~l~~~~----l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 166 (829)
|..|++++|.+. . + -.+... .+|..|+++|+. ...+..-..++++|.+||++.|..+..--...+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 777777777543 1 1 111111 356667777762 2233333556777777777777665543333366777777
Q ss_pred EEEccCCccccccccCCCccchhhhcCCCCCcEEEeec
Q 003328 167 ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHV 204 (829)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~ 204 (829)
+|.++.|+.. .+..+-+++.++.|.+|++.+
T Consensus 342 ~lSlsRCY~i-------~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 342 HLSLSRCYDI-------IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeehhhhcCC-------ChHHeeeeccCcceEEEEecc
Confidence 7777777644 334455566677777777765
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7e-07 Score=68.88 Aligned_cols=56 Identities=29% Similarity=0.434 Sum_probs=31.7
Q ss_pred CccEEEecCCCCCCCch-hhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCC
Q 003328 71 ELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSD 126 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~ 126 (829)
+|++|++++|+++.+|. .+..+++|++|++++|.++.+ ..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665553 345555566666555555554 445555555555555554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=9.4e-08 Score=105.71 Aligned_cols=124 Identities=24% Similarity=0.308 Sum_probs=67.1
Q ss_pred CCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEE
Q 003328 20 KDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 98 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L 98 (829)
..+..+++..+.+.++-..+ .+++|+.|++.+|. +..+... +..+.+|++|++++|.|+.+. .+..+..|+.|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~----i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK----IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccc----hhhcccc-hhhhhcchheecccccccccc-chhhccchhhh
Confidence 34444445555554422222 45566666666665 4444332 245666666666666665552 44555556666
Q ss_pred EccccCCCCcccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCC
Q 003328 99 CLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 99 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 149 (829)
++.+|.+..+..+..+..|+.++++++.+..+... ...+.+++.+.+.++.
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 66666666655555566666666666665555432 3555566666665544
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=7.4e-07 Score=94.26 Aligned_cols=131 Identities=18% Similarity=0.308 Sum_probs=82.7
Q ss_pred CCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccC
Q 003328 570 NNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNF 649 (829)
Q Consensus 570 ~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 649 (829)
..++.|+|++| .++. +|. -..+|++|.|++|..++.+|.. .+++|++|.+.+|+++..+
T Consensus 52 ~~l~~L~Is~c-~L~s-LP~----LP~sLtsL~Lsnc~nLtsLP~~------------LP~nLe~L~Ls~Cs~L~sL--- 110 (426)
T PRK15386 52 RASGRLYIKDC-DIES-LPV----LPNELTEITIENCNNLTTLPGS------------IPEGLEKLTVCHCPEISGL--- 110 (426)
T ss_pred cCCCEEEeCCC-CCcc-cCC----CCCCCcEEEccCCCCcccCCch------------hhhhhhheEccCccccccc---
Confidence 66777788777 5665 452 2346777777777777666542 3567777777777777655
Q ss_pred CCccccCCCcCeEEEeC--CCCCcccccCCcccccccCCCCccccchhhhhhhhhhhhhhccccCcccccceeecccccc
Q 003328 650 TGNIIEMPVLCSLAIEN--CTDMETFISNSVVHATTDNKEPQKLTSEENFLLVHQVQPLFNEKVGEEAKDCIVFRELEYL 727 (829)
Q Consensus 650 ~~~~~~~~sL~~L~i~~--C~~L~~l~~~~~~p~~l~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~sL~~L 727 (829)
.++|+.|++.+ |..+..+ +++|++|
T Consensus 111 ------P~sLe~L~L~~n~~~~L~~L-----------------------------------------------PssLk~L 137 (426)
T PRK15386 111 ------PESVRSLEIKGSATDSIKNV-----------------------------------------------PNGLTSL 137 (426)
T ss_pred ------ccccceEEeCCCCCcccccC-----------------------------------------------cchHhhe
Confidence 23566666642 2223322 4677778
Q ss_pred cccCCCCc--ccccCCCCccccCcccEEeeccCCcceeecCCCCCCCCceeeeccC
Q 003328 728 TLDCLPSL--TSFSLGNYALEFPSLEHVVVRQCPTMKIFSQGGVDAPKLNKVKPTE 781 (829)
Q Consensus 728 ~l~~c~~L--~~l~~~~~~~~~~sL~~L~i~~C~~l~~l~~~~~~~p~L~~l~i~~ 781 (829)
.+.+.... ..++ ..+| ++|++|.|.+|..+. +|.++- ++|+.|.+..
T Consensus 138 ~I~~~n~~~~~~lp-~~LP---sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 138 SINSYNPENQARID-NLIS---PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHI 186 (426)
T ss_pred eccccccccccccc-cccC---CcccEEEecCCCccc-Cccccc--ccCcEEEecc
Confidence 77543211 1112 2345 889999999999774 454332 5899999874
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=3.2e-06 Score=97.91 Aligned_cols=105 Identities=20% Similarity=0.356 Sum_probs=87.4
Q ss_pred CccEEEecCCCCCC-CchhhcCCCCCcEEEccccCCC-Cc-ccccCCCCCcEEEccCCCCc-cchhhhcCCCCCCEEecc
Q 003328 71 ELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQLE-DV-AAIGQLKKLEILSFRGSDIK-QLPLEIGQLTRLQLLDLS 146 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 146 (829)
.++.|+|+++.+.. +|..++.+++|++|+|++|.+. .+ ..++.+.+|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999988874 8888999999999999999887 45 67899999999999999887 688889999999999999
Q ss_pred CCCCCCccChhhhcC-CCcccEEEccCCccc
Q 003328 147 NCSSLVVIAPNVISK-FSRLEELYMGDSFSQ 176 (829)
Q Consensus 147 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~~~ 176 (829)
+|...+.+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 98877788887 554 456778888777543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=3.9e-06 Score=97.28 Aligned_cols=104 Identities=25% Similarity=0.351 Sum_probs=85.3
Q ss_pred CCcEEEccccCCC-Cc-ccccCCCCCcEEEccCCCCc-cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEc
Q 003328 94 NLQTLCLDWCQLE-DV-AAIGQLKKLEILSFRGSDIK-QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 94 ~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 170 (829)
.++.|+|+++.+. .+ ..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4789999999987 44 88999999999999999987 78999999999999999999866788887 999999999999
Q ss_pred cCCccccccccCCCccchhhhcC-CCCCcEEEeecCC
Q 003328 171 GDSFSQWDKVEGGSNASLAELKG-LSKLTTLEIHVWD 206 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~-l~~L~~L~l~~~~ 206 (829)
++|.+. +..+ ..++. ..++..+++.+|.
T Consensus 498 s~N~l~-----g~iP---~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-----GRVP---AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-----ccCC---hHHhhccccCceEEecCCc
Confidence 998765 3333 33333 2356778887765
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=2.8e-07 Score=92.68 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=112.8
Q ss_pred CCCCcEEEcCCCCCC--CCCC---cc-CCCCCcEEEeecCCCccccccc---------chhhhcCCCCccEEEecCCCCC
Q 003328 19 RKDPIAISLPQRDIQ--ELPE---RL-QCPNLQLFLLITKGIAPVSMQI---------SDLFFEGTEELKVLSLIGIHFS 83 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~--~l~~---~~-~~~~Lr~L~l~~~~~~~~~~~l---------p~~~~~~l~~Lr~L~L~~~~i~ 83 (829)
.++++.|+||.|-+. .++. .+ .+..|+.|.+.+|..++.-+.. -......-..||++....|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 347888888888654 2221 22 5778888888887744321111 0011244567888888888765
Q ss_pred C-----CchhhcCCCCCcEEEccccCCC-----Cc-ccccCCCCCcEEEccCCCCc-----cchhhhcCCCCCCEEeccC
Q 003328 84 S-----LPSSLGRLINLQTLCLDWCQLE-----DV-AAIGQLKKLEILSFRGSDIK-----QLPLEIGQLTRLQLLDLSN 147 (829)
Q Consensus 84 ~-----lp~~l~~l~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~ 147 (829)
. +...+...+.|+.+.+..|.+. -+ ..+..++||++||++.|.++ .+-..+..+++|++|++.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 4 3345566778888888888654 12 67778888888888888665 2344456677888888888
Q ss_pred CCCCCccC-----hhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 148 CSSLVVIA-----PNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 148 ~~~l~~lp-----~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
|. +..-. ...-...++|++|.+.+|.+..+ ...+....+..++.|..|++.+|..
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d----a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGNEITRD----AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcchhHHH----HHHHHHHHHhcchhhHHhcCCcccc
Confidence 76 33211 11123367788888887766511 1112233445577788888887776
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-07 Score=92.26 Aligned_cols=85 Identities=25% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCcEEEccCCCCc--cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcC
Q 003328 116 KLEILSFRGSDIK--QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKG 193 (829)
Q Consensus 116 ~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 193 (829)
.||+||++...|+ .+-.-+..+.+|+.|.+.|...-..+... |++=.+|+.|+++.|... ...+.---+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~------t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF------TENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc------chhHHHHHHHh
Confidence 4777777777665 44444566777777777776533334433 666777777777776533 11122233556
Q ss_pred CCCCcEEEeecCCC
Q 003328 194 LSKLTTLEIHVWDA 207 (829)
Q Consensus 194 l~~L~~L~l~~~~~ 207 (829)
++.|..|+++|+..
T Consensus 259 cs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 259 CSRLDELNLSWCFL 272 (419)
T ss_pred hhhHhhcCchHhhc
Confidence 67777777777764
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.4e-06 Score=100.30 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=29.6
Q ss_pred hcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCC---cccccCCCCCcEEEccCC
Q 003328 66 FEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILSFRGS 125 (829)
Q Consensus 66 ~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~---l~~i~~L~~L~~L~l~~~ 125 (829)
+.++++|+.||+|+++++.+ ..++++++|++|.+.+-.+.. +..+.+|++|++||+|..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 34555555555555555554 445555555555555444331 244445555555555544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=8.6e-06 Score=57.41 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=20.7
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc
Q 003328 71 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV 108 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l 108 (829)
+|++|++++|+|+.+|..++++++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666666655555555555555555555555544
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.1e-06 Score=97.15 Aligned_cols=174 Identities=23% Similarity=0.304 Sum_probs=129.8
Q ss_pred cCCCCCCcEEEcCCCCCCCCCC-ccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQELPE-RLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 94 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~ 94 (829)
+..+++++.+++.+|.|..+.. ...+++|++|++++|. +.++.. +..+..|+.|++++|.|+.+. .+..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~----I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK----ITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc----cccccc--hhhccchhhheeccCcchhcc-CCccchh
Confidence 4567899999999999999988 4589999999999999 677765 478888999999999998874 4666999
Q ss_pred CcEEEccccCCCCccc--ccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCc--ccEEEc
Q 003328 95 LQTLCLDWCQLEDVAA--IGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSR--LEELYM 170 (829)
Q Consensus 95 Lr~L~L~~~~l~~l~~--i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~--L~~L~l 170 (829)
|+.+++++|.+..+.. ...+.+++.+++.++.+..+. .+..+..+..+++..+. +..+.. +..+.. |+++++
T Consensus 164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhc
Confidence 9999999999998855 699999999999999877552 23344455555666654 333322 344444 888888
Q ss_pred cCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCC
Q 003328 171 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI 209 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 209 (829)
.++.+. .....+..+.++..|++..+.+..
T Consensus 240 ~~n~i~---------~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 240 SGNRIS---------RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccCccc---------cccccccccccccccchhhccccc
Confidence 887664 111445556677777777666543
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=7.1e-07 Score=101.74 Aligned_cols=119 Identities=19% Similarity=0.162 Sum_probs=67.7
Q ss_pred hhhheeEeeccccCccc--cccccCCCCCCCCCcEEEEeec-CCceEEecccCcccccccccccceeccccccchhhhcC
Q 003328 264 LKEAEEIHLIKLKGVQN--VVHELDDGEGFPRLKHLWVERC-SEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDS 340 (829)
Q Consensus 264 l~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 340 (829)
.+.++.+.+.+|..+.+ ..... ..+++|+.|.+.+| ...... ..........+++|+.|++..|..+.+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 46677777777766655 22222 26777777777773 222211 0001112344566777777776654443222
Q ss_pred CCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCc
Q 003328 341 QLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDL 388 (829)
Q Consensus 341 ~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 388 (829)
.+. ..+++|++|.+.+|..+++.....+...++.|++|++++|..+
T Consensus 263 ~l~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALA--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHH--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 111 2366777777777777666666666666777777777777665
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=5.8e-07 Score=102.45 Aligned_cols=170 Identities=19% Similarity=0.262 Sum_probs=87.9
Q ss_pred cCccceEeeccCCCcceeecCCccccCCCccEEeeccCCCcceecccccCCCCCccceeecccccccccccCCCccchhh
Q 003328 453 FGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQ 532 (829)
Q Consensus 453 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~ 532 (829)
+++|+.|.+.+|..+++-........+++|++|++++|..+++.. +..+..+|
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-----------l~~~~~~c---------------- 320 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-----------LEALLKNC---------------- 320 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-----------HHHHHHhC----------------
Confidence 677888887777776655544444467778888888877764331 11111123
Q ss_pred hhhhhccccCCcceEEecc---CCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCc-EEEEecCcc
Q 003328 533 KCYEEMIGFRDIEHLQLSH---FPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLV-LLEVRNCDS 608 (829)
Q Consensus 533 ~~l~~~~~~~~L~~L~l~~---c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~-~L~i~~C~~ 608 (829)
++++.|.+.. |+.++............ ..+..+.+.+|+++++.... ... ..... .+.+.+|+.
T Consensus 321 ---------~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~-~~~-~~~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 321 ---------PNLRELKLLSLNGCPSLTDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLS-YCG-ISDLGLELSLRGCPN 388 (482)
T ss_pred ---------cchhhhhhhhcCCCccHHHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhh-hhh-ccCcchHHHhcCCcc
Confidence 2222222222 23333322111110000 14555666666666653221 111 22223 466777887
Q ss_pred h-hhhhccCccccccccccccccccceeecCCCCCcceeccCCCcccc-CCCcCeEEEeCCCCCccc
Q 003328 609 L-EEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIE-MPVLCSLAIENCTDMETF 673 (829)
Q Consensus 609 L-~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~sL~~L~i~~C~~L~~l 673 (829)
+ ..+..... ...+++.|.+..|...+..+- ..... +..++.+.+.+|+.+..-
T Consensus 389 l~~~l~~~~~----------~~~~l~~L~l~~~~~~t~~~l--~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 389 LTESLELRLC----------RSDSLRVLNLSDCRLVTDKGL--RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cchHHHHHhc----------cCCccceEecccCccccccch--HHHhhhhhccccCCccCcccccch
Confidence 7 33332221 233488899988887765511 11111 677788888888777543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=7.9e-06 Score=94.30 Aligned_cols=136 Identities=22% Similarity=0.239 Sum_probs=93.9
Q ss_pred CCCccEEEecCCCC-C-CCchhhc-CCCCCcEEEccccCCC--Cc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCE
Q 003328 69 TEELKVLSLIGIHF-S-SLPSSLG-RLINLQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQL 142 (829)
Q Consensus 69 l~~Lr~L~L~~~~i-~-~lp~~l~-~l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 142 (829)
-.+|++|+++|... . .-|..++ .+++||.|.+++-.+. ++ .-..++++|+.||+|++.++.+ .+|++|+|||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46899999988643 2 3555664 6899999999987653 45 6778899999999999999888 78999999999
Q ss_pred EeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 143 LDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 143 L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
|.+.+-.......-..+.+|++|++||++........ ......++.-..+++|+.||.++++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcch
Confidence 9887744221111112788999999999876543100 00111222233588999999997765
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3.4e-05 Score=54.40 Aligned_cols=38 Identities=37% Similarity=0.549 Sum_probs=19.7
Q ss_pred CCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCcc
Q 003328 116 KLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVI 154 (829)
Q Consensus 116 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l 154 (829)
+|++|++++|.|+.+|..+++|++|++|++++|. +.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555555555555555555555555555555554 4443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=7e-07 Score=97.61 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=108.0
Q ss_pred CCCCCCcEEEcCCCCCCCCCCcc---------------------------------CCCCCcEEEeecCCCcccccccch
Q 003328 17 TIRKDPIAISLPQRDIQELPERL---------------------------------QCPNLQLFLLITKGIAPVSMQISD 63 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~---------------------------------~~~~Lr~L~l~~~~~~~~~~~lp~ 63 (829)
.....||+|-+.++++..+.... ....|.+.++++|. ...+..
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~----L~~mD~ 181 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR----LVLMDE 181 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh----HHhHHH
Confidence 34578999999988765322111 12234444455554 333333
Q ss_pred hhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCcccc--cCCCCCcEEEccCCCCccchhhhcCCCCCC
Q 003328 64 LFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI--GQLKKLEILSFRGSDIKQLPLEIGQLTRLQ 141 (829)
Q Consensus 64 ~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~i--~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 141 (829)
+ +.-+++|+.|+|++|.++..- .+.+|.+|++|||++|.+..+.-+ ..+ +|+.|.+++|.++.+ .+|.+|.+|+
T Consensus 182 S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 182 S-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred H-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhh
Confidence 3 467889999999999998874 788999999999999988876322 233 399999999998887 4788999999
Q ss_pred EEeccCCCCC--CccChhhhcCCCcccEEEccCCccc
Q 003328 142 LLDLSNCSSL--VVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 142 ~L~l~~~~~l--~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
.||+++|-.. ..+.+ ++.|..|+.|++.||.+-
T Consensus 258 ~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 9999987522 23333 788899999999998654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=6.3e-05 Score=70.28 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=81.5
Q ss_pred CCcEEEcCCCCCCCCCCc-cCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhc-CCCCCcEE
Q 003328 21 DPIAISLPQRDIQELPER-LQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLG-RLINLQTL 98 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~-~l~~Lr~L 98 (829)
+=+.+++.+.++..+... .-..+...+++.+|. +.+++. |..++.|.+|.+..|+|+.+-..+. -+++|..|
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd----l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDND----LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred cccccccccccccchhhccccccccceecccccc----hhhccc--CCCccccceEEecCCcceeeccchhhhccccceE
Confidence 345666666655433321 134456778888887 566655 6788888888888888887666664 45678888
Q ss_pred EccccCCCCc---ccccCCCCCcEEEccCCCCccchh----hhcCCCCCCEEeccCC
Q 003328 99 CLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQLPL----EIGQLTRLQLLDLSNC 148 (829)
Q Consensus 99 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~ 148 (829)
.|.+|++..+ ..+..++.|++|.+-+|.++.-.. -+.++++|++||..+.
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888876654 566777788888888776664432 2566666666666553
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=4.5e-05 Score=77.20 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=118.3
Q ss_pred CCCCCCcEEEcCCCCCCCCC--------------Ccc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCC
Q 003328 17 TIRKDPIAISLPQRDIQELP--------------ERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIH 81 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~--------------~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~ 81 (829)
....+|.+|++.+|++.... ... .-++||++...+|.............|...+.|..+.++.|.
T Consensus 117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~ 196 (382)
T KOG1909|consen 117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG 196 (382)
T ss_pred HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence 44779999999999876221 112 568899999999984433333344567888999999999998
Q ss_pred CCC-----CchhhcCCCCCcEEEccccCCC-----Cc-ccccCCCCCcEEEccCCCCc-----cchhhh-cCCCCCCEEe
Q 003328 82 FSS-----LPSSLGRLINLQTLCLDWCQLE-----DV-AAIGQLKKLEILSFRGSDIK-----QLPLEI-GQLTRLQLLD 144 (829)
Q Consensus 82 i~~-----lp~~l~~l~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~l~-----~lp~~i-~~L~~L~~L~ 144 (829)
|.. +...+..++||++|||+.|.++ .+ ..+..+++|++|++++|.++ .+-..+ ...++|++|.
T Consensus 197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 752 5567889999999999999876 34 78889999999999999776 222333 2468999999
Q ss_pred ccCCCCCCc----cChhhhcCCCcccEEEccCCccc
Q 003328 145 LSNCSSLVV----IAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 145 l~~~~~l~~----lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+.+|..-.+ +... +...+.|+.|++++|...
T Consensus 277 l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 277 LAGNEITRDAALALAAC-MAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCcchhHHHHHHHHHHH-HhcchhhHHhcCCccccc
Confidence 999873221 1111 566899999999999874
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00019 Score=67.14 Aligned_cols=102 Identities=24% Similarity=0.207 Sum_probs=85.7
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc--hhhcCCCCCcE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQT 97 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp--~~l~~l~~Lr~ 97 (829)
.+...+++++|++..++....++.|.+|.+.+|. +..+.+.+-.-+++|.+|.+.+|+|.++- +.+..|+.|++
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr----It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR----ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCc----ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 5788899999998887776689999999999999 77777666566788999999999988653 34678999999
Q ss_pred EEccccCCCCc-----ccccCCCCCcEEEccCC
Q 003328 98 LCLDWCQLEDV-----AAIGQLKKLEILSFRGS 125 (829)
Q Consensus 98 L~L~~~~l~~l-----~~i~~L~~L~~L~l~~~ 125 (829)
|.+-+|.++.- -.+.++++|++||+..-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999987733 67899999999999874
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=9.7e-06 Score=70.58 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=51.4
Q ss_pred cCCCCccEEEecCCCCCCCchhhc-CCCCCcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEe
Q 003328 67 EGTEELKVLSLIGIHFSSLPSSLG-RLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLD 144 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~~i~~lp~~l~-~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 144 (829)
.+..+|...+|++|.++.+|..+. ..+-+.+|++.+|.+.++ ..+..++.||.|+++.|.+...|+-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344455555666666655555553 334556666666666555 446666666666666666666666666666666666
Q ss_pred ccCCCCCCccChh
Q 003328 145 LSNCSSLVVIAPN 157 (829)
Q Consensus 145 l~~~~~l~~lp~~ 157 (829)
..++. ...+|.+
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 65544 4444443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=5.6e-05 Score=74.58 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=114.5
Q ss_pred CCcEEEcCCCCCCCCCCc--c--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh-cCCCCC
Q 003328 21 DPIAISLPQRDIQELPER--L--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINL 95 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~--~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l-~~l~~L 95 (829)
-+.-+.+.++.|...... + .++.++.+++.+|..+. ..+ ..+++.++++|++|+++.|.+..--..+ ...++|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 444667778877755432 1 68899999999998432 112 2356789999999999999766422222 467899
Q ss_pred cEEEccccCCC--Cc-ccccCCCCCcEEEccCCCCccch---hhhcCC-CCCCEEeccCCCCCCccChhhh-cCCCcccE
Q 003328 96 QTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSDIKQLP---LEIGQL-TRLQLLDLSNCSSLVVIAPNVI-SKFSRLEE 167 (829)
Q Consensus 96 r~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp---~~i~~L-~~L~~L~l~~~~~l~~lp~~~l-~~L~~L~~ 167 (829)
++|.|.|..+. .. ..+..++.++.|+++.|.++.+- ..+..- +.+++|+...|....-.....+ ...+++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 99999999765 55 77888999999999988554221 112222 2455555555531111100002 22466666
Q ss_pred EEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC---ccccccccEEEEE
Q 003328 168 LYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ---DWVSVELQRYKIC 225 (829)
Q Consensus 168 L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~ 225 (829)
+.+..|.+. ....-.....++.+-.|++..+++..... ...++.|..+++.
T Consensus 204 v~v~e~PlK-------~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 204 VFVCEGPLK-------TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred eeeecCccc-------chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 666666443 11111222234445556666655543322 1256666666654
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=5.2e-05 Score=74.83 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=49.6
Q ss_pred ccEEEecCCCCCCCc--hhh-cCCCCCcEEEccccCCC---Cc-ccccCCCCCcEEEccCCCCc----cchhhhcCCCCC
Q 003328 72 LKVLSLIGIHFSSLP--SSL-GRLINLQTLCLDWCQLE---DV-AAIGQLKKLEILSFRGSDIK----QLPLEIGQLTRL 140 (829)
Q Consensus 72 Lr~L~L~~~~i~~lp--~~l-~~l~~Lr~L~L~~~~l~---~l-~~i~~L~~L~~L~l~~~~l~----~lp~~i~~L~~L 140 (829)
+..|.+.++.|...- ..+ ..+.+++.|||.+|.+. ++ ..+.+|++|++|+++.|.+. .+| ..+.+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 334455555554321 122 24556666666666655 33 44556666666666666433 333 234566
Q ss_pred CEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 141 QLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 141 ~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
++|-+.|...-..-....+..++++++|+++.|
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 666665543111111112455566666666555
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=5.4e-05 Score=66.08 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=88.6
Q ss_pred CCcEEEcCCCCCCCCCCcc----CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 21 DPIAISLPQRDIQELPERL----QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
.+..++++.|.+..++... .-..|...++++|. .+++|+.+-.+++..+.|++++|.+..+|..+..++.||
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch----hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 3556778888776555432 55677888999988 788888876777789999999999999999999999999
Q ss_pred EEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhh
Q 003328 97 TLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLE 133 (829)
Q Consensus 97 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~ 133 (829)
.|+++.|++... ..|..|.+|-+||..++.+..+|..
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 999999988766 7777799999999999888887765
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=0.00049 Score=67.26 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=45.3
Q ss_pred CCCccEEEecCCCCCC-----CchhhcCCCCCcEEEccccCCC-----------Cc-ccccCCCCCcEEEccCCCCc-cc
Q 003328 69 TEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLE-----------DV-AAIGQLKKLEILSFRGSDIK-QL 130 (829)
Q Consensus 69 l~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~~l~-----------~l-~~i~~L~~L~~L~l~~~~l~-~l 130 (829)
+..+..++||||.|.. +...|.+-.+|+..+++.-... -+ +.+-++++|+..++|.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4555555555555431 3333444455555555543211 12 45566677777777776543 22
Q ss_pred h----hhhcCCCCCCEEeccCCCCCCccC
Q 003328 131 P----LEIGQLTRLQLLDLSNCSSLVVIA 155 (829)
Q Consensus 131 p----~~i~~L~~L~~L~l~~~~~l~~lp 155 (829)
| +-|++-+.|.||.+++|. ++.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 2 235666777777777665 44443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0016 Score=63.98 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCCcEEEccccCCCCcccccCCCCCcEEEccCC--CCc-cchhhhcCCCCCCEEeccCCCC--CCccChhhhcCCCccc
Q 003328 92 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGS--DIK-QLPLEIGQLTRLQLLDLSNCSS--LVVIAPNVISKFSRLE 166 (829)
Q Consensus 92 l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~--l~~lp~~~l~~L~~L~ 166 (829)
+..|+.|.+.++.++.+..+-.|.+|++|+++.| .+. .++.-+-++++|++|++++|+. +..+++ +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3445555555555555555555566666666665 222 3333334446666666666541 122333 45555555
Q ss_pred EEEccCCccccccccCCCccchhhhcCCCCCcEEEeec
Q 003328 167 ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHV 204 (829)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~ 204 (829)
.|++..|... .-....-..+.-+++|++|+-..
T Consensus 120 ~Ldl~n~~~~-----~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVT-----NLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCcc-----ccccHHHHHHHHhhhhccccccc
Confidence 6666555443 11222223333445555554443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.52 E-value=0.0088 Score=58.76 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=99.0
Q ss_pred hhhcCCCCCcEEEccccCCC-----Cc-ccccCCCCCcEEEccCCCC----ccchh-------hhcCCCCCCEEeccCCC
Q 003328 87 SSLGRLINLQTLCLDWCQLE-----DV-AAIGQLKKLEILSFRGSDI----KQLPL-------EIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 87 ~~l~~l~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~l----~~lp~-------~i~~L~~L~~L~l~~~~ 149 (829)
..+..+..+..++|+||.+. .+ ..|.+-.+|++.+++.-.. .++|. .+-++++|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 44556788999999999876 35 7788889999999987421 13443 46789999999999987
Q ss_pred CCCccChh---hhcCCCcccEEEccCCccccccccCCCc------cchhhhcCCCCCcEEEeecCCCCCcCCcc------
Q 003328 150 SLVVIAPN---VISKFSRLEELYMGDSFSQWDKVEGGSN------ASLAELKGLSKLTTLEIHVWDAQILPQDW------ 214 (829)
Q Consensus 150 ~l~~lp~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~l~~L~~L~l~~~~~~~~~~~~------ 214 (829)
.-...|.. .|++-+.|.||.+.+|.....- ++... +...+..+.+.|+......|++.+.+...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a-G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA-GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccc-hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 54445542 4778899999999998764100 01111 12234556788999888888887776542
Q ss_pred ccccccEEEEEEcccc
Q 003328 215 VSVELQRYKICIGEAR 230 (829)
Q Consensus 215 ~~~~L~~L~l~~~~~~ 230 (829)
...+|+.++++.+...
T Consensus 183 sh~~lk~vki~qNgIr 198 (388)
T COG5238 183 SHENLKEVKIQQNGIR 198 (388)
T ss_pred hhcCceeEEeeecCcC
Confidence 3468888888654443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0015 Score=64.02 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=26.0
Q ss_pred cCCCCccEEEecCC--CCC-CCchhhcCCCCCcEEEccccCCCCc---ccccCCCCCcEEEccCCC
Q 003328 67 EGTEELKVLSLIGI--HFS-SLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSD 126 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~--~i~-~lp~~l~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~ 126 (829)
..+++|++|.++.| ++. .++.....+++|++|++++|+++.+ ..+.++.+|..||+..|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34445555555544 222 1333333445555555555544322 333444444444444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00031 Score=68.88 Aligned_cols=78 Identities=27% Similarity=0.215 Sum_probs=49.8
Q ss_pred CCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc---ccccCCCCC
Q 003328 41 CPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKL 117 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L 117 (829)
+.+.+.|++.||. +.++ +++.+|+.|.||.|+-|.|+.+ ..+.+|++|+.|+|..|.|.++ .-+.++++|
T Consensus 18 l~~vkKLNcwg~~----L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCG----LDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCC----ccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455666666666 4444 3456777777777777777776 3466777777777777766655 445555556
Q ss_pred cEEEccCC
Q 003328 118 EILSFRGS 125 (829)
Q Consensus 118 ~~L~l~~~ 125 (829)
|.|.|..|
T Consensus 91 r~LWL~EN 98 (388)
T KOG2123|consen 91 RTLWLDEN 98 (388)
T ss_pred hhHhhccC
Confidence 66655554
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.0011 Score=62.38 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=52.6
Q ss_pred ecccccccccCCCCcccccCCCCccccCcccEEeeccCCcceeecC-CCCCCCCceeeeccC
Q 003328 721 FRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVVVRQCPTMKIFSQ-GGVDAPKLNKVKPTE 781 (829)
Q Consensus 721 ~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l~~-~~~~~p~L~~l~i~~ 781 (829)
+++++.|.+.+|..+.+++.+.+..-.++|+.|+|++||+|++.-. .+..+++|+.+.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 5899999999999999998776555689999999999999997543 668899999999985
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.036 Score=49.96 Aligned_cols=114 Identities=14% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEccccCCCCc--ccccCCCC
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKK 116 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~ 116 (829)
.+++|+.+.+.. . ...++...|.++.+|+.+.+.++ +..++. .+..+++|+.+.+.. .+..+ ..+..+.+
T Consensus 10 ~~~~l~~i~~~~-~----~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN-T----IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC-C----eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 455666666653 2 34566555666666666666553 444333 345555666666654 33333 44555666
Q ss_pred CcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCc
Q 003328 117 LEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSR 164 (829)
Q Consensus 117 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 164 (829)
|+.+++..+ ++.++.. +.+. +|+.+.+.. .+..++...+.++.+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccccccc
Confidence 666666543 4444332 4444 555555543 233444433333333
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0013 Score=64.72 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccCh-hhhcCCCcccEEEc
Q 003328 92 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAP-NVISKFSRLEELYM 170 (829)
Q Consensus 92 l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l 170 (829)
+.+.+.|+..||.+.++..+.++..|++|.|+-|+|+.+- .+..+++|++|+|..|. +.++.. .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 3445556666666666666666666666666666666552 34556666666666544 333322 11455566666655
Q ss_pred cCC
Q 003328 171 GDS 173 (829)
Q Consensus 171 ~~~ 173 (829)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.43 E-value=0.0066 Score=35.46 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=14.9
Q ss_pred CCcEEEccCCCCccchhhhcCC
Q 003328 116 KLEILSFRGSDIKQLPLEIGQL 137 (829)
Q Consensus 116 ~L~~L~l~~~~l~~lp~~i~~L 137 (829)
+|++||+++|.++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677777777777777766543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.0059 Score=57.57 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=51.7
Q ss_pred hhhhccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchh
Q 003328 534 CYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLE 610 (829)
Q Consensus 534 ~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~ 610 (829)
.+..+..+++++.|.+.+|..+.+..-+.+.. ..++|+.|+|++|+.+|+- --..+..+++|+.|.+++-+.+.
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 33445557888888888888887765444433 2388888888888888873 33345578888888888766554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.43 E-value=0.016 Score=33.88 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=11.8
Q ss_pred CccEEEecCCCCCCCchhhc
Q 003328 71 ELKVLSLIGIHFSSLPSSLG 90 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~ 90 (829)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.27 E-value=0.13 Score=46.35 Aligned_cols=107 Identities=17% Similarity=0.304 Sum_probs=61.6
Q ss_pred ccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hc
Q 003328 60 QISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IG 135 (829)
Q Consensus 60 ~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~ 135 (829)
.+++..|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.+. +..+ ..+.++.+|+.+.+.. .+..++.. +.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35666788889999999874 4555543 4677878999988774 6666 6678887888888876 55555443 55
Q ss_pred CCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccC
Q 003328 136 QLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 172 (829)
Q Consensus 136 ~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 172 (829)
.+++|+.+.+... +..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6888888888652 555655546666 777777654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.66 E-value=0.076 Score=28.70 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=6.5
Q ss_pred CCcEEEccCCCCccch
Q 003328 116 KLEILSFRGSDIKQLP 131 (829)
Q Consensus 116 ~L~~L~l~~~~l~~lp 131 (829)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.74 E-value=0.12 Score=27.99 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=6.2
Q ss_pred CccEEEecCCCCCCCc
Q 003328 71 ELKVLSLIGIHFSSLP 86 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp 86 (829)
+||+|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.93 E-value=0.56 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.7
Q ss_pred CCCCcEEEccCCCCccchhhh
Q 003328 114 LKKLEILSFRGSDIKQLPLEI 134 (829)
Q Consensus 114 L~~L~~L~l~~~~l~~lp~~i 134 (829)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777766653
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.93 E-value=0.56 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.7
Q ss_pred CCCCcEEEccCCCCccchhhh
Q 003328 114 LKKLEILSFRGSDIKQLPLEI 134 (829)
Q Consensus 114 L~~L~~L~l~~~~l~~lp~~i 134 (829)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777766653
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.37 E-value=0.028 Score=54.08 Aligned_cols=84 Identities=8% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCc
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLE 118 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~ 118 (829)
.++..++|+++.|. ...+... |+.+..|..|+++.+.+..+|..++.+..++.+++..|..+.. .+++++++++
T Consensus 40 ~~kr~tvld~~s~r----~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR----LVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred ccceeeeehhhhhH----HHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 56667777777776 4455444 4667777778888777777887777777777777777777766 7778888888
Q ss_pred EEEccCCCCc
Q 003328 119 ILSFRGSDIK 128 (829)
Q Consensus 119 ~L~l~~~~l~ 128 (829)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888877643
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.20 E-value=0.035 Score=53.41 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=45.9
Q ss_pred cCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEec
Q 003328 67 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDL 145 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 145 (829)
...+..++||++.++...+-..++-+..|.-|+++.+.+..+ ..++.+..++++++..|..+..|.+.++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 455556666666665555444444455555555555555555 5555555555555555555555555555555555555
Q ss_pred cCCC
Q 003328 146 SNCS 149 (829)
Q Consensus 146 ~~~~ 149 (829)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5443
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.22 E-value=0.77 Score=27.96 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=14.9
Q ss_pred CCCccEEeeccCCCccee
Q 003328 479 FPSLERVSLTHCPNMKTF 496 (829)
Q Consensus 479 ~~~L~~L~i~~C~~l~~~ 496 (829)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 578889999999888875
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.95 E-value=1.3 Score=26.93 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCCccEEEecCCCCCCCchhh
Q 003328 69 TEELKVLSLIGIHFSSLPSSL 89 (829)
Q Consensus 69 l~~Lr~L~L~~~~i~~lp~~l 89 (829)
+++|++|++++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777766543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.95 E-value=1.3 Score=26.93 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCCccEEEecCCCCCCCchhh
Q 003328 69 TEELKVLSLIGIHFSSLPSSL 89 (829)
Q Consensus 69 l~~Lr~L~L~~~~i~~lp~~l 89 (829)
+++|++|++++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777766543
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.14 E-value=0.96 Score=27.52 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=13.1
Q ss_pred cCcccEEeeccCCccee
Q 003328 747 FPSLEHVVVRQCPTMKI 763 (829)
Q Consensus 747 ~~sL~~L~i~~C~~l~~ 763 (829)
+++|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888888763
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.74 E-value=0.036 Score=61.64 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCccEEEecCCCCCC-----CchhhcCCCCCcEEEccccCCCC-----c-cccc----CCCCCcEEEccCCCCc
Q 003328 70 EELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED-----V-AAIG----QLKKLEILSFRGSDIK 128 (829)
Q Consensus 70 ~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~i~----~L~~L~~L~l~~~~l~ 128 (829)
+.+++|.+..|.++. +.+.+....+++.++++.|.+.. + ..+. ...++++|++.+|.++
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 344555555554432 44444445556666665554321 1 2222 3455555555555444
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.69 E-value=0.31 Score=54.43 Aligned_cols=158 Identities=22% Similarity=0.228 Sum_probs=97.3
Q ss_pred CCCCCcEEEcCCCCCCCC-----CCcc-C-CCCCcEEEeecCCCccc-ccccchhhhcCCCCccEEEecCCCCCC-----
Q 003328 18 IRKDPIAISLPQRDIQEL-----PERL-Q-CPNLQLFLLITKGIAPV-SMQISDLFFEGTEELKVLSLIGIHFSS----- 84 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l-----~~~~-~-~~~Lr~L~l~~~~~~~~-~~~lp~~~~~~l~~Lr~L~L~~~~i~~----- 84 (829)
...++..|++++|.+... .... . -..+++|.+..|..... ...+... +....+++.++++.|.+..
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhcccchhhhHH
Confidence 445777788888876621 1112 1 24567777776663211 1223343 4568899999999997642
Q ss_pred Cchhhc----CCCCCcEEEccccCCCC-----c-ccccCCCC-CcEEEccCCCCc-----cchhhhcCC-CCCCEEeccC
Q 003328 85 LPSSLG----RLINLQTLCLDWCQLED-----V-AAIGQLKK-LEILSFRGSDIK-----QLPLEIGQL-TRLQLLDLSN 147 (829)
Q Consensus 85 lp~~l~----~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~-L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~ 147 (829)
++..+. ...++++|++.+|.++. + ..+....+ ++.|++..|.+. .+.+.+..+ ..++++++..
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 333443 57899999999998662 3 56666766 777999888654 345556666 6778888887
Q ss_pred CCCCCccChh---hhcCCCcccEEEccCCccc
Q 003328 148 CSSLVVIAPN---VISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 148 ~~~l~~lp~~---~l~~L~~L~~L~l~~~~~~ 176 (829)
|+....-... .+..+..++++.+..+.+.
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 7633222211 1344556666666665543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.13 E-value=6.9 Score=23.85 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=12.5
Q ss_pred CCcEEEccCCCCccchh
Q 003328 116 KLEILSFRGSDIKQLPL 132 (829)
Q Consensus 116 ~L~~L~l~~~~l~~lp~ 132 (829)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777775
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.44 E-value=9.7 Score=23.24 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=8.7
Q ss_pred CCCcEEEccCCCCcc
Q 003328 115 KKLEILSFRGSDIKQ 129 (829)
Q Consensus 115 ~~L~~L~l~~~~l~~ 129 (829)
.+|++|+++.|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.57 E-value=8.6 Score=22.64 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=4.7
Q ss_pred CCcEEEccCCCC
Q 003328 116 KLEILSFRGSDI 127 (829)
Q Consensus 116 ~L~~L~l~~~~l 127 (829)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=33.79 E-value=32 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=5.9
Q ss_pred CccEEEecCCCC
Q 003328 71 ELKVLSLIGIHF 82 (829)
Q Consensus 71 ~Lr~L~L~~~~i 82 (829)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 445555555444
Done!