Query 003328
Match_columns 829
No_of_seqs 463 out of 3795
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-35 7.9E-40 352.4 28.7 500 8-614 37-556 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.8E-35 2.7E-39 347.8 27.6 197 16-227 73-279 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-33 1.4E-37 329.9 38.8 576 20-760 25-621 (680)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-32 7.3E-37 319.3 40.7 528 23-760 14-557 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-32 1.7E-36 320.7 40.0 583 23-783 7-620 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.8E-32 6.1E-37 320.0 34.8 187 22-224 14-209 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-31 9.4E-36 310.0 35.7 519 9-669 22-557 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.7E-30 5.7E-35 303.3 36.2 183 9-206 23-213 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3.5E-29 1.2E-33 290.1 33.0 147 23-175 10-161 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-30 2.7E-34 294.0 26.1 485 25-669 10-509 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 5.9E-29 2E-33 288.1 31.4 494 9-668 18-529 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-28 1.3E-32 292.9 29.6 338 9-386 15-373 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-27 8.5E-32 285.9 36.4 174 23-208 7-187 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-27 7.7E-32 273.4 27.3 468 9-607 16-508 (549)
15 4eco_A Uncharacterized protein 100.0 5E-27 1.7E-31 273.8 25.5 46 8-53 64-116 (636)
16 4g8a_A TOLL-like receptor 4; l 99.9 7.7E-25 2.6E-29 257.1 40.7 179 23-213 34-219 (635)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-25 3.6E-30 257.5 31.3 463 23-668 3-479 (520)
18 4ecn_A Leucine-rich repeat pro 99.9 1.1E-25 3.7E-30 266.6 30.6 185 14-211 315-611 (876)
19 4g8a_A TOLL-like receptor 4; l 99.9 5.1E-25 1.7E-29 258.6 32.8 162 9-176 42-214 (635)
20 2z7x_B TOLL-like receptor 1, v 99.9 8.8E-26 3E-30 258.1 25.5 440 45-673 3-459 (520)
21 1o6v_A Internalin A; bacterial 99.9 4.3E-24 1.5E-28 240.1 28.5 185 19-225 45-229 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5E-24 1.7E-28 245.7 28.3 144 22-175 33-181 (562)
23 4ecn_A Leucine-rich repeat pro 99.9 1.2E-24 4E-29 257.8 23.3 178 35-227 440-654 (876)
24 4eco_A Uncharacterized protein 99.9 1E-24 3.5E-29 254.3 20.7 153 61-225 198-385 (636)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-24 9E-29 248.0 22.6 149 39-207 28-181 (562)
26 4fmz_A Internalin; leucine ric 99.9 2.7E-23 9.2E-28 224.4 24.6 171 18-208 42-212 (347)
27 4fmz_A Internalin; leucine ric 99.9 3E-23 1E-27 224.0 24.5 292 29-386 31-322 (347)
28 1o6v_A Internalin A; bacterial 99.9 1E-22 3.5E-27 228.9 27.4 195 9-225 57-251 (466)
29 1jl5_A Outer protein YOPM; leu 99.9 3.1E-23 1.1E-27 231.0 20.5 141 20-175 11-165 (454)
30 3v47_A TOLL-like receptor 5B a 99.9 5.9E-22 2E-26 222.4 27.9 154 19-176 29-193 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-22 5.7E-27 225.3 21.2 169 16-210 38-206 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 1.7E-22 5.7E-27 226.9 21.2 321 22-391 12-362 (455)
33 3o6n_A APL1; leucine-rich repe 99.9 3.4E-22 1.2E-26 219.3 22.3 156 38-209 41-200 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 4.6E-21 1.6E-25 216.4 29.0 173 22-208 13-189 (477)
35 3o6n_A APL1; leucine-rich repe 99.9 2E-21 6.8E-26 213.2 23.5 281 18-386 43-329 (390)
36 1jl5_A Outer protein YOPM; leu 99.9 1E-21 3.4E-26 218.8 20.6 267 38-385 7-287 (454)
37 3oja_B Anopheles plasmodium-re 99.9 3.6E-21 1.2E-25 223.1 22.1 156 38-209 47-206 (597)
38 2id5_A Lingo-1, leucine rich r 99.9 1.8E-20 6.1E-25 211.6 25.7 301 9-386 22-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 1.3E-20 4.3E-25 218.5 23.8 280 19-386 50-335 (597)
40 3bz5_A Internalin-J, INLJ; leu 99.8 7.5E-20 2.6E-24 203.8 25.5 190 10-228 54-244 (457)
41 3ogk_B Coronatine-insensitive 99.8 6.3E-22 2.2E-26 230.1 6.1 37 570-607 463-499 (592)
42 1ogq_A PGIP-2, polygalacturona 99.8 2E-20 6.7E-25 198.2 16.6 256 9-335 32-305 (313)
43 3ogk_B Coronatine-insensitive 99.8 1.1E-21 3.8E-26 228.0 7.2 406 40-611 71-527 (592)
44 4fcg_A Uncharacterized protein 99.8 3.8E-20 1.3E-24 197.2 16.8 174 19-207 80-265 (328)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-19 6E-24 193.0 18.4 153 43-212 34-189 (332)
46 2p1m_B Transport inhibitor res 99.8 2.2E-21 7.6E-26 225.6 3.7 152 40-204 64-244 (594)
47 4fcg_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 191.8 16.8 133 68-210 79-221 (328)
48 1xku_A Decorin; proteoglycan, 99.8 2.3E-18 7.8E-23 184.1 24.1 122 21-149 32-156 (330)
49 2p1m_B Transport inhibitor res 99.8 5.9E-21 2E-25 222.0 4.0 177 18-200 64-270 (594)
50 1ozn_A Reticulon 4 receptor; N 99.8 8.2E-19 2.8E-23 183.4 18.4 202 10-225 23-233 (285)
51 1xku_A Decorin; proteoglycan, 99.8 5.5E-18 1.9E-22 181.2 24.5 177 18-212 50-233 (330)
52 2z80_A TOLL-like receptor 2, v 99.8 7.7E-19 2.6E-23 189.7 16.5 195 20-227 31-232 (353)
53 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-18 8E-23 184.2 19.9 184 21-225 34-225 (332)
54 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 182.3 16.3 175 23-210 10-190 (306)
55 2o6q_A Variable lymphocyte rec 99.8 7.3E-18 2.5E-22 174.5 19.5 206 8-227 2-215 (270)
56 3zyj_A Leucine-rich repeat-con 99.8 6.5E-18 2.2E-22 188.2 19.4 189 21-224 44-238 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 7.5E-18 2.6E-22 188.4 19.6 189 21-224 55-249 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-17 1.1E-21 187.9 24.6 256 20-386 40-295 (622)
59 2z80_A TOLL-like receptor 2, v 99.8 1.1E-17 3.8E-22 180.6 19.2 187 10-211 43-238 (353)
60 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-18 5.2E-23 183.7 12.2 154 42-209 50-211 (313)
61 1h6u_A Internalin H; cell adhe 99.8 1.4E-17 4.7E-22 175.8 19.4 191 17-228 38-228 (308)
62 1p9a_G Platelet glycoprotein I 99.7 2.1E-17 7.3E-22 172.5 18.6 196 16-226 6-204 (290)
63 1ozn_A Reticulon 4 receptor; N 99.7 3.7E-17 1.3E-21 170.8 19.4 175 22-210 13-192 (285)
64 1z7x_W Ribonuclease inhibitor; 99.7 2E-19 6.9E-24 202.1 0.9 158 42-207 3-182 (461)
65 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 182.6 19.2 194 17-225 72-274 (452)
66 3zyj_A Leucine-rich repeat-con 99.7 3.5E-17 1.2E-21 182.2 18.7 193 17-224 61-262 (440)
67 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 175.5 14.7 189 9-212 18-216 (306)
68 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 165.6 20.1 186 9-208 27-218 (270)
69 2xwt_C Thyrotropin receptor; s 99.7 3E-17 1E-21 166.6 15.1 202 7-224 20-233 (239)
70 2z62_A TOLL-like receptor 4, v 99.7 5.2E-17 1.8E-21 168.7 16.6 196 18-227 26-234 (276)
71 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.7E-21 168.9 18.9 183 9-212 52-234 (308)
72 1z7x_W Ribonuclease inhibitor; 99.7 5.4E-19 1.8E-23 198.6 0.1 180 19-209 2-213 (461)
73 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 181.4 4.9 244 41-336 33-277 (317)
74 2z62_A TOLL-like receptor 4, v 99.7 4.7E-16 1.6E-20 161.5 19.6 178 23-212 10-194 (276)
75 1h6t_A Internalin B; cell adhe 99.7 1.6E-16 5.5E-21 166.0 16.1 172 17-209 43-214 (291)
76 3rfs_A Internalin B, repeat mo 99.7 3.1E-16 1.1E-20 162.3 17.5 178 16-208 37-218 (272)
77 3m19_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 158.6 17.8 175 20-208 14-192 (251)
78 1wwl_A Monocyte differentiatio 99.7 2.5E-17 8.4E-22 174.4 8.1 194 20-225 43-261 (312)
79 1p9a_G Platelet glycoprotein I 99.7 8.4E-16 2.9E-20 160.4 17.5 183 9-208 21-208 (290)
80 3o53_A Protein LRIM1, AGAP0063 99.7 5.5E-17 1.9E-21 172.1 8.0 266 43-390 11-277 (317)
81 3rfs_A Internalin B, repeat mo 99.7 9.5E-16 3.3E-20 158.7 16.9 163 9-176 52-218 (272)
82 3g06_A SSPH2 (leucine-rich rep 99.6 4.7E-15 1.6E-19 170.1 21.3 237 19-333 60-296 (622)
83 3m19_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 152.6 17.8 161 10-176 26-192 (251)
84 1h6t_A Internalin B; cell adhe 99.6 2.3E-15 7.9E-20 157.2 16.5 187 22-229 26-212 (291)
85 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.7E-20 171.8 13.9 170 20-211 34-207 (487)
86 1m9s_A Internalin B; cell inva 99.6 2.5E-15 8.5E-20 172.2 15.1 174 17-211 40-213 (605)
87 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 161.6 11.2 184 21-213 65-269 (310)
88 3oja_A Leucine-rich immune mol 99.6 2.3E-15 7.7E-20 169.2 13.1 164 41-223 33-197 (487)
89 2xwt_C Thyrotropin receptor; s 99.6 3.5E-15 1.2E-19 151.3 13.1 174 16-205 51-236 (239)
90 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 145.6 13.3 150 40-208 42-194 (197)
91 1wwl_A Monocyte differentiatio 99.6 3.9E-15 1.3E-19 157.4 14.0 174 41-226 94-283 (312)
92 3e6j_A Variable lymphocyte rec 99.6 9.4E-15 3.2E-19 146.8 15.8 150 21-176 20-172 (229)
93 1xeu_A Internalin C; cellular 99.6 8.4E-16 2.9E-20 157.9 7.2 171 18-210 17-187 (263)
94 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 145.1 14.9 148 23-176 14-165 (220)
95 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 144.1 13.6 164 23-207 10-177 (208)
96 1xeu_A Internalin C; cellular 99.6 1.2E-14 4.2E-19 149.1 14.0 155 10-176 31-185 (263)
97 4ezg_A Putative uncharacterize 99.6 1.9E-14 6.5E-19 140.9 14.3 149 18-176 42-194 (197)
98 4ay9_X Follicle-stimulating ho 99.6 2.3E-14 7.7E-19 154.2 15.8 147 23-174 12-165 (350)
99 4glp_A Monocyte differentiatio 99.6 7E-15 2.4E-19 155.4 11.1 195 20-227 91-304 (310)
100 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-14 8.6E-19 142.6 14.5 148 23-176 14-166 (220)
101 2ast_B S-phase kinase-associat 99.5 1.1E-14 3.9E-19 155.8 10.7 145 21-173 48-205 (336)
102 4ay9_X Follicle-stimulating ho 99.5 6.2E-14 2.1E-18 150.7 16.3 192 9-213 20-220 (350)
103 1m9s_A Internalin B; cell inva 99.5 6.1E-14 2.1E-18 160.7 16.3 157 9-176 54-210 (605)
104 2ca6_A RAN GTPase-activating p 99.5 8.4E-15 2.9E-19 160.0 8.8 83 67-149 91-198 (386)
105 2o6s_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 140.0 12.6 148 17-176 25-178 (208)
106 2xot_A Amphoterin-induced prot 99.5 6.4E-14 2.2E-18 151.3 14.0 172 23-208 21-202 (361)
107 2xot_A Amphoterin-induced prot 99.5 6.7E-14 2.3E-18 151.1 14.0 154 45-211 21-179 (361)
108 3goz_A Leucine-rich repeat-con 99.5 1.3E-14 4.3E-19 157.0 6.7 185 17-210 19-240 (362)
109 3cvr_A Invasion plasmid antige 99.5 2.7E-13 9.2E-18 153.5 17.3 181 20-228 59-241 (571)
110 2ast_B S-phase kinase-associat 99.5 2.6E-14 8.9E-19 153.0 8.5 195 20-227 70-282 (336)
111 2ell_A Acidic leucine-rich nuc 99.5 1.8E-13 6.3E-18 130.2 11.5 132 18-156 22-164 (168)
112 3e6j_A Variable lymphocyte rec 99.5 5.6E-13 1.9E-17 133.7 15.3 129 17-149 37-170 (229)
113 2v9t_B SLIT homolog 2 protein 99.5 4.9E-13 1.7E-17 133.2 14.5 136 9-149 22-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 7.8E-13 2.7E-17 131.7 14.5 136 10-150 23-165 (220)
115 2ell_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 128.4 11.1 136 70-211 24-163 (168)
116 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4.1E-17 148.2 16.6 159 19-209 79-244 (571)
117 2je0_A Acidic leucine-rich nuc 99.4 5E-13 1.7E-17 124.3 10.0 122 19-146 16-148 (149)
118 3goz_A Leucine-rich repeat-con 99.4 1.4E-13 4.6E-18 148.9 5.9 175 24-209 2-210 (362)
119 2je0_A Acidic leucine-rich nuc 99.4 6E-13 2.1E-17 123.7 8.7 123 42-170 17-147 (149)
120 1a9n_A U2A', U2A'; complex (nu 99.4 9.1E-13 3.1E-17 126.3 9.2 126 18-149 17-151 (176)
121 2ca6_A RAN GTPase-activating p 99.4 4.2E-13 1.4E-17 146.5 7.7 206 16-227 56-313 (386)
122 2wfh_A SLIT homolog 2 protein 99.3 4.1E-12 1.4E-16 123.5 12.3 104 71-175 32-138 (193)
123 4b8c_D Glucose-repressible alc 99.3 7.9E-13 2.7E-17 155.5 8.5 155 20-176 173-329 (727)
124 1w8a_A SLIT protein; signaling 99.3 4.3E-12 1.5E-16 123.4 12.4 122 23-149 11-137 (192)
125 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 120.7 13.9 121 23-149 13-137 (193)
126 1a9n_A U2A', U2A'; complex (nu 99.3 3E-12 1E-16 122.7 9.4 127 40-173 17-150 (176)
127 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 118.0 13.7 123 22-149 9-135 (177)
128 1w8a_A SLIT protein; signaling 99.3 5.8E-12 2E-16 122.5 10.6 124 45-176 11-139 (192)
129 4b8c_D Glucose-repressible alc 99.3 3.5E-12 1.2E-16 150.0 7.9 131 40-176 222-354 (727)
130 2o6r_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 112.2 13.7 125 44-176 9-137 (177)
131 1ds9_A Outer arm dynein; leuci 99.2 5.2E-13 1.8E-17 130.8 -3.4 123 21-149 24-151 (198)
132 1dce_A Protein (RAB geranylger 99.2 4.3E-11 1.5E-15 136.2 11.5 123 71-202 442-567 (567)
133 1dce_A Protein (RAB geranylger 99.2 7.6E-11 2.6E-15 134.2 12.6 194 18-223 347-566 (567)
134 1ds9_A Outer arm dynein; leuci 99.1 8E-13 2.7E-17 129.4 -5.1 153 43-201 24-180 (198)
135 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 107.1 12.0 80 70-149 33-116 (174)
136 3g39_A Variable lymphocyte rec 99.1 7.1E-10 2.4E-14 105.2 12.0 80 70-149 30-113 (170)
137 2r9u_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 106.6 11.0 102 72-176 14-118 (174)
138 3g39_A Variable lymphocyte rec 99.1 6E-10 2.1E-14 105.7 10.9 103 71-176 10-115 (170)
139 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.9E-14 114.8 11.7 189 19-223 48-327 (329)
140 3un9_A NLR family member X1; l 98.8 9.4E-10 3.2E-14 118.4 2.4 153 20-176 72-252 (372)
141 3sb4_A Hypothetical leucine ri 98.8 2.7E-08 9.1E-13 105.6 11.3 168 19-202 100-328 (329)
142 3un9_A NLR family member X1; l 98.7 2.5E-09 8.6E-14 115.0 2.5 162 41-208 71-252 (372)
143 2ifg_A High affinity nerve gro 98.6 6.3E-08 2.2E-12 103.6 10.4 96 76-174 14-114 (347)
144 2ifg_A High affinity nerve gro 98.6 1.2E-07 4.2E-12 101.3 10.8 90 58-149 21-114 (347)
145 4fdw_A Leucine rich hypothetic 98.5 2.6E-06 8.8E-11 92.4 17.6 110 59-173 169-281 (401)
146 4fdw_A Leucine rich hypothetic 98.5 2.4E-06 8.1E-11 92.6 17.1 141 21-171 158-308 (401)
147 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.2E-11 81.6 5.1 20 653-672 135-154 (176)
148 2ra8_A Uncharacterized protein 98.2 1.5E-06 5E-11 92.5 6.1 181 19-207 106-319 (362)
149 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.8E-11 80.2 4.9 82 93-174 61-150 (176)
150 2ra8_A Uncharacterized protein 98.1 3.9E-06 1.3E-10 89.2 7.0 150 18-176 137-320 (362)
151 1io0_A Tropomodulin; LRR prote 98.0 4E-06 1.4E-10 80.2 5.7 110 65-176 31-164 (185)
152 1io0_A Tropomodulin; LRR prote 98.0 5.6E-06 1.9E-10 79.2 6.2 109 40-149 34-162 (185)
153 4fs7_A Uncharacterized protein 97.9 0.00015 5E-09 78.7 16.5 81 290-384 295-375 (394)
154 4fs7_A Uncharacterized protein 97.8 0.00043 1.5E-08 74.9 16.7 34 347-383 295-328 (394)
155 3rw6_A Nuclear RNA export fact 97.6 4.5E-05 1.5E-09 76.7 6.0 78 91-169 168-257 (267)
156 4gt6_A Cell surface protein; l 97.3 0.017 5.9E-07 62.2 21.4 96 44-146 66-168 (394)
157 3rw6_A Nuclear RNA export fact 97.3 0.00027 9.3E-09 71.0 6.4 60 113-175 168-232 (267)
158 4gt6_A Cell surface protein; l 97.2 0.026 8.9E-07 60.7 21.8 112 58-173 51-170 (394)
159 4h09_A Hypothetical leucine ri 95.7 0.06 2E-06 57.5 11.9 125 40-173 215-343 (379)
160 4h09_A Hypothetical leucine ri 95.4 0.078 2.7E-06 56.5 11.9 146 40-203 192-341 (379)
161 1pgv_A TMD-1, tropomodulin TMD 94.8 0.036 1.2E-06 52.4 5.9 108 66-174 37-168 (197)
162 3rfe_A Platelet glycoprotein I 94.3 0.064 2.2E-06 47.2 6.1 54 24-82 12-67 (130)
163 3rfe_A Platelet glycoprotein I 94.3 0.064 2.2E-06 47.2 6.0 51 74-126 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.1 0.086 2.9E-06 49.8 6.9 40 67-106 67-111 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-35 Score=352.36 Aligned_cols=500 Identities=15% Similarity=0.059 Sum_probs=338.6
Q ss_pred cccCCccccCC-CCCCcEEEcCCCCCCC----CCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCC
Q 003328 8 ADVEKKMEETI-RKDPIAISLPQRDIQE----LPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIH 81 (829)
Q Consensus 8 ~~~~~~~~~~~-~~~l~~L~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~ 81 (829)
.+.+.|.+|.. ..+++.|+++++.+.. +++.+ ++++|+.++++.+. +..+|.. |+++++||+|++++|.
T Consensus 37 ~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~----~~~l~~~-~~~l~~L~~L~Ls~n~ 111 (768)
T 3rgz_A 37 KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH----INGSVSG-FKCSASLTSLDLSRNS 111 (768)
T ss_dssp SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC----EEECCCC-CCCCTTCCEEECCSSE
T ss_pred CCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC----cCCCchh-hccCCCCCEEECCCCc
Confidence 46788988853 5689999999998874 66554 78889999988887 4455665 5899999999999999
Q ss_pred CCC-Cch--hhcCCCCCcEEEccccCCCCc---ccccCCCCCcEEEccCCCCccc-hhh---hcCCCCCCEEeccCCCCC
Q 003328 82 FSS-LPS--SLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQL-PLE---IGQLTRLQLLDLSNCSSL 151 (829)
Q Consensus 82 i~~-lp~--~l~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l 151 (829)
+.. +|. .++++++||+|++++|.+... ..+.++++|++|++++|.++.. |.. ++++++|++|++++|...
T Consensus 112 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 191 (768)
T 3rgz_A 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191 (768)
T ss_dssp EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEE
T ss_pred CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccc
Confidence 875 777 899999999999999987633 3348999999999999999855 444 789999999999998743
Q ss_pred CccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCC-cCCcc-ccccccEEEEEEccc
Q 003328 152 VVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI-LPQDW-VSVELQRYKICIGEA 229 (829)
Q Consensus 152 ~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~ 229 (829)
+..+ .+++++|++|++++|.+. + .+..++++++|++|+++++.+.. ++..+ .+++|+.|+++.+..
T Consensus 192 ~~~~---~~~l~~L~~L~Ls~n~l~-----~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 192 GDVD---VSRCVNLEFLDVSSNNFS-----T----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp SCCB---CTTCTTCCEEECCSSCCC-----S----CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred ccCC---cccCCcCCEEECcCCcCC-----C----CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 3333 588999999999999775 1 22337888999999999998763 33333 678889888764432
Q ss_pred cccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEe
Q 003328 230 RRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIV 309 (829)
Q Consensus 230 ~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~ 309 (829)
.. . ++.. .+++|++|++.++.-...+...+. ..+++|++|+++++.-...+
T Consensus 260 ~~-~---------------------~~~~----~l~~L~~L~L~~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~l~~~~- 310 (768)
T 3rgz_A 260 VG-P---------------------IPPL----PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNHFYGAV- 310 (768)
T ss_dssp EE-S---------------------CCCC----CCTTCCEEECCSSEEEESCCCCSC--TTCTTCSEEECCSSEEEECC-
T ss_pred cC-c---------------------cCcc----ccCCCCEEECcCCccCCccCHHHH--hhcCcCCEEECcCCcCCCcc-
Confidence 11 0 0000 147888888888754333333332 23489999999888632221
Q ss_pred cccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhc-ccceEEEecccCc
Q 003328 310 GSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLL-RLQKVEVFFCDDL 388 (829)
Q Consensus 310 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~-~L~~L~i~~c~~l 388 (829)
+ .....+++|+.|++.++.-...+... ..+.+++|++|++.+|.--..+|. .+..++ +|+.|+++++.--
T Consensus 311 --p--~~~~~l~~L~~L~L~~n~l~~~ip~~---~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 311 --P--PFFGSCSLLESLALSSNNFSGELPMD---TLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp --C--GGGGGCTTCCEEECCSSEEEEECCHH---HHTTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEE
T ss_pred --c--hHHhcCCCccEEECCCCcccCcCCHH---HHhcCCCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcC
Confidence 1 12356788999999887643221110 035788999999988853324442 244555 8999999887532
Q ss_pred ceecccCCCCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcc
Q 003328 389 EMMVGPDREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLT 468 (829)
Q Consensus 389 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 468 (829)
..++.. .. ....+.|+.|++++|.-...+ +..+..+++|+.|++.++.--.
T Consensus 382 ~~~~~~-~~--------------------~~~~~~L~~L~L~~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 382 GPILPN-LC--------------------QNPKNTLQELYLQNNGFTGKI--------PPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EECCTT-TT--------------------CSTTCCCCEEECCSSEEEEEC--------CGGGGGCTTCCEEECCSSEEES
T ss_pred CCcChh-hh--------------------hcccCCccEEECCCCcccccc--------CHHHhcCCCCCEEECcCCcccC
Confidence 222211 11 011457888888888644333 4456778899999998884332
Q ss_pred eeecCCccccCCCccEEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccchhhhhhhhccccCCcceE
Q 003328 469 SFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHL 547 (829)
Q Consensus 469 ~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L 547 (829)
..+. ....+++|+.|++++|.-...+|..+ ..++. |+.| +.+|.-....+ . .+..+++|+.|
T Consensus 433 ~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~-L~~L~L~~N~l~~~~p---------~---~l~~l~~L~~L 495 (768)
T 3rgz_A 433 TIPS--SLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKT-LETLILDFNDLTGEIP---------S---GLSNCTNLNWI 495 (768)
T ss_dssp CCCG--GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTT-CCEEECCSSCCCSCCC---------G---GGGGCTTCCEE
T ss_pred cccH--HHhcCCCCCEEECCCCcccCcCCHHH--cCCCC-ceEEEecCCcccCcCC---------H---HHhcCCCCCEE
Confidence 3332 23478899999999986444454321 23455 8888 77774321111 1 12337889999
Q ss_pred EeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhc
Q 003328 548 QLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLH 614 (829)
Q Consensus 548 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~ 614 (829)
+++++.-...+ +..+..+++|+.|++++|.-... +|..+ ..+++|+.|++++|+-...+|.
T Consensus 496 ~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~-~p~~l-~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 496 SLSNNRLTGEI----PKWIGRLENLAILKLSNNSFSGN-IPAEL-GDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp ECCSSCCCSCC----CGGGGGCTTCCEEECCSSCCEEE-CCGGG-GGCTTCCEEECCSSEEESBCCG
T ss_pred EccCCccCCcC----ChHHhcCCCCCEEECCCCcccCc-CCHHH-cCCCCCCEEECCCCccCCcCCh
Confidence 99887633233 22344568899999999865543 56554 5889999999998874444443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-35 Score=347.81 Aligned_cols=197 Identities=15% Similarity=0.062 Sum_probs=147.5
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccch--hhhcCCCCccEEEecCCCCCC-Cchhh-c
Q 003328 16 ETIRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISD--LFFEGTEELKVLSLIGIHFSS-LPSSL-G 90 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~--~~~~~l~~Lr~L~L~~~~i~~-lp~~l-~ 90 (829)
+..++.|+.++++.+.+..+|..+ .+++||+|++++|. ..+.+|. . ++++++|++|++++|.+.. .|..+ .
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS---LSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSE---EEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCc---CCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 455678888888888776666655 78889999998888 4555665 4 5888899999999887764 55554 7
Q ss_pred CCCCCcEEEccccCCCCc--cc---ccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcc
Q 003328 91 RLINLQTLCLDWCQLEDV--AA---IGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRL 165 (829)
Q Consensus 91 ~l~~Lr~L~L~~~~l~~l--~~---i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L 165 (829)
++++|++|++++|.+... .. ++++++|++|++++|.+..... ++++++|++|++++|...+.+|. ++++++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L 225 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSAL 225 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCC
Confidence 888899999998888754 33 7888889999998887775432 37888899999988875454554 7888889
Q ss_pred cEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEc
Q 003328 166 EELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIG 227 (829)
Q Consensus 166 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 227 (829)
++|++++|.+. ......++++++|++|++++|.+........+++|+.|++..+
T Consensus 226 ~~L~Ls~n~l~--------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 226 QHLDISGNKLS--------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp CEEECCSSCCC--------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred CEEECcCCcCC--------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence 99988888664 2345667788888888888887754333347788888887543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-33 Score=329.85 Aligned_cols=576 Identities=15% Similarity=0.112 Sum_probs=274.7
Q ss_pred CCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCc
Q 003328 20 KDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQ 96 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr 96 (829)
+++++|++++|.+..+++. + ++++|++|++++|. +..++...|+++++|++|++++|.++.+|. .++.+++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 4556666666555555542 2 55556666665555 333433334555566666665555555554 355555666
Q ss_pred EEEccccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhc--CCCcccEEEcc
Q 003328 97 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVIS--KFSRLEELYMG 171 (829)
Q Consensus 97 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~--~L~~L~~L~l~ 171 (829)
+|++++|.+..+ ..++++++|++|++++|.++.. |..++++++|++|++++|. +..++...++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 666665555544 3455555666666665555533 3335555566666655554 3334332222 34555555555
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEeecCCCCC-----cCCccccccccEEEEEEccccccCCCCCCCccEEEec
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI-----LPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLH 246 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~ 246 (829)
+|.+. ......++.+.+|+.+++..+.... ++......+|+.|++..+...
T Consensus 180 ~n~l~--------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~---------------- 235 (680)
T 1ziw_A 180 SNQIK--------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS---------------- 235 (680)
T ss_dssp TCCCC--------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC----------------
T ss_pred CCccc--------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc----------------
Confidence 55433 1122233344445555554433210 000012234444443211110
Q ss_pred cCCccccchhhhhHHHh-hhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccc
Q 003328 247 GLENVSTLLENYGMKML-LKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLES 325 (829)
Q Consensus 247 ~~~~~~~~l~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~ 325 (829)
.+....+... .++|+.|+++++.-.......+ +.+++|++|+++++.-. .+.. .....+++|+.
T Consensus 236 -------~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~-~~~~----~~~~~l~~L~~ 300 (680)
T 1ziw_A 236 -------TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNIQ-HLFS----HSLHGLFNVRY 300 (680)
T ss_dssp -------EECTTTTGGGGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCBS-EECT----TTTTTCTTCCE
T ss_pred -------ccChhHhhccCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCccC-ccCh----hhhcCCCCccE
Confidence 0000000000 0235666665553221111122 25566666666655322 2111 01234555666
Q ss_pred eeccccccchhhhcCCCC-----CCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccC-cceecccCCCCC
Q 003328 326 LSLWFLSNLETICDSQLT-----EDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDD-LEMMVGPDREKP 399 (829)
Q Consensus 326 L~L~~~~~l~~~~~~~l~-----~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~ 399 (829)
|++.++..-..+....+| ..+.+++|++|++.++ +++.+++ ..+..+++|++|++++|.. +..+......
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~-- 376 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFV-- 376 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTG--
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhc--
Confidence 666543211110000011 1334556666666554 2333322 2234455566666555431 1111110000
Q ss_pred CCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeecCCccccC
Q 003328 400 TTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLENYTLEF 479 (829)
Q Consensus 400 ~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~ 479 (829)
....++|+.|++.++. ++.+.. .....+
T Consensus 377 --------------------------------------------------~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l 404 (680)
T 1ziw_A 377 --------------------------------------------------SLAHSPLHILNLTKNK-ISKIES-DAFSWL 404 (680)
T ss_dssp --------------------------------------------------GGTTSCCCEEECTTSC-CCEECT-TTTTTC
T ss_pred --------------------------------------------------ccccCcCceEECCCCC-CCeECh-hhhhCC
Confidence 0112355556655553 222222 112245
Q ss_pred CCccEEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceee
Q 003328 480 PSLERVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREI 558 (829)
Q Consensus 480 ~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~ 558 (829)
++|+.|+++++.--..++.. ....++. |+.| +.+|.-...... .+..+++|+.|+++++. ++.+
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~-~~~~l~~-L~~L~Ls~n~l~~~~~~------------~~~~~~~L~~L~l~~n~-l~~~ 469 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQ-EWRGLEN-IFEIYLSYNKYLQLTRN------------SFALVPSLQRLMLRRVA-LKNV 469 (680)
T ss_dssp TTCCEEECCSSCCEEECCSG-GGTTCTT-CCEEECCSCSEEECCTT------------TTTTCTTCCEEECTTSC-CBCT
T ss_pred CCCCEEeCCCCcCccccCcc-cccCccc-ccEEecCCCCcceeChh------------hhhcCcccccchhcccc-cccc
Confidence 56666666665422223211 1123333 5555 554432110000 11237788888888754 2211
Q ss_pred ccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecC
Q 003328 559 WHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLI 638 (829)
Q Consensus 559 ~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 638 (829)
. .....+..+++|+.|+++++. ++. +|...+..+++|++|+++++. ++.++.... .......-..+++|++|++.
T Consensus 470 ~-~~p~~~~~l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 470 D-SSPSPFQPLRNLTILDLSNNN-IAN-INDDMLEGLEKLEILDLQHNN-LARLWKHAN-PGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp T-CSSCTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CGGGGSTTS-TTSCCCTTTTCTTCCEEECC
T ss_pred c-cCCcccccCCCCCEEECCCCC-CCc-CChhhhccccccCEEeCCCCC-ccccchhhc-cCCcchhhcCCCCCCEEECC
Confidence 1 112334556889999998875 444 455555688899999999875 555432110 00000001146888888887
Q ss_pred CCCCcceeccCCCccccCCCcCeEEEeCCCCCcccccCCcccccccCCCCccccchhhhhhhhhhhhhhccccCcccccc
Q 003328 639 DLPKLKRFCNFTGNIIEMPVLCSLAIENCTDMETFISNSVVHATTDNKEPQKLTSEENFLLVHQVQPLFNEKVGEEAKDC 718 (829)
Q Consensus 639 ~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~p~~l~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 718 (829)
++ +++.+ ++.....+++|+.|++++ .+++.+ |.....
T Consensus 545 ~N-~l~~i--~~~~~~~l~~L~~L~Ls~-N~l~~l------~~~~~~--------------------------------- 581 (680)
T 1ziw_A 545 SN-GFDEI--PVEVFKDLFELKIIDLGL-NNLNTL------PASVFN--------------------------------- 581 (680)
T ss_dssp SS-CCCCC--CTTTTTTCTTCCEEECCS-SCCCCC------CTTTTT---------------------------------
T ss_pred CC-CCCCC--CHHHcccccCcceeECCC-CCCCcC------CHhHhC---------------------------------
Confidence 76 46666 222367788888888865 466666 322211
Q ss_pred eeecccccccccCCCCcccccCCCCccccCcccEEeeccCCc
Q 003328 719 IVFRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVVVRQCPT 760 (829)
Q Consensus 719 ~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~ 760 (829)
.+++|+.|+++++ .|+.++.......+++|++|++.++|-
T Consensus 582 -~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 582 -NQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp -TCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred -CCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 2678888888886 677765443222468888888887663
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-32 Score=319.34 Aligned_cols=528 Identities=14% Similarity=0.147 Sum_probs=284.8
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~ 101 (829)
++++.++++++++|..+. +++++|++++|. +..++...|.++++||+|++++|.++.+ |..+.++++||+|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNP----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCC----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 456666666666665432 566666666666 4455544456666666666666666653 4456666666666666
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCC-ccChhhhcCCCcccEEEccCCcccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLV-VIAPNVISKFSRLEELYMGDSFSQW 177 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l~~~~~~~ 177 (829)
+|.++.+ ..|+++++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~- 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ- 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC-
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce-
Confidence 6666654 45666666666666666666554 446666666666666665222 34554 666666666666666544
Q ss_pred ccccCCCccchhhhcCCCC-CcEEEeecCCCCCcCCcc-ccccccEEEEEEccccccCCCCCCCccEEEeccCCccccch
Q 003328 178 DKVEGGSNASLAELKGLSK-LTTLEIHVWDAQILPQDW-VSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLL 255 (829)
Q Consensus 178 ~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l 255 (829)
+.....++.+.+++. +..|+++++.+..++... ...+|+.+++..+.... ..
T Consensus 167 ----~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~----------------------~~ 220 (606)
T 3vq2_A 167 ----TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS----------------------NI 220 (606)
T ss_dssp ----EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCH----------------------HH
T ss_pred ----ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccch----------------------hH
Confidence 111223344444433 446666666665554432 33355555554322100 00
Q ss_pred hhhhHHHhhhhheeEeecc--ccCcccc---c-cccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceecc
Q 003328 256 ENYGMKMLLKEAEEIHLIK--LKGVQNV---V-HELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLW 329 (829)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~--~~~~~~~---~-~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~ 329 (829)
... .-..+++++.+.+.. +.....+ . ..+..+..+ .++.+.+.....+.... .....+++|+.|++.
T Consensus 221 ~~~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~-----~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 221 MKT-CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDI-----VKFHCLANVSAMSLA 293 (606)
T ss_dssp HHH-HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGG-----GSCGGGTTCSEEEEE
T ss_pred HHH-HhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccc-----cccccCCCCCEEEec
Confidence 000 000122333322211 1110000 0 000000011 23444443333322110 012345556666665
Q ss_pred ccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcceecccCCCCCCCcccccccc
Q 003328 330 FLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEIT 409 (829)
Q Consensus 330 ~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~ 409 (829)
++.- +. ++....+++|++|++.+|.- +.+|.. .+++|++|+++++..+...
T Consensus 294 ~~~~-~~-----l~~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~------------------ 344 (606)
T 3vq2_A 294 GVSI-KY-----LEDVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISF------------------ 344 (606)
T ss_dssp SCCC-CC-----CCCCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEEC------------------
T ss_pred Cccc-hh-----hhhccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccch------------------
Confidence 5432 11 22244667777777777754 665532 5677777777776444322
Q ss_pred cCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceee-cCCccccCCCccEEeec
Q 003328 410 ADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFC-LENYTLEFPSLERVSLT 488 (829)
Q Consensus 410 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~-~~~~~~~~~~L~~L~i~ 488 (829)
....+++|+.|+++++. ++... .......+++|++|+++
T Consensus 345 ---------------------------------------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 345 ---------------------------------------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp ---------------------------------------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECC
T ss_pred ---------------------------------------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECC
Confidence 12346667777776652 22221 11122356777777777
Q ss_pred cCCCcceecccccCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCc
Q 003328 489 HCPNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSF 568 (829)
Q Consensus 489 ~C~~l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 568 (829)
+|. ++.+|. . +..+++|++|+++++. +..... ...+..
T Consensus 385 ~n~-l~~~~~-----~---------------------------------~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~ 422 (606)
T 3vq2_A 385 FNG-AIIMSA-----N---------------------------------FMGLEELQHLDFQHST-LKRVTE--FSAFLS 422 (606)
T ss_dssp SCS-EEEECC-----C---------------------------------CTTCTTCCEEECTTSE-EESTTT--TTTTTT
T ss_pred CCc-cccchh-----h---------------------------------ccCCCCCCeeECCCCc-cCCccC--hhhhhc
Confidence 764 444421 1 1126778888887754 333221 022344
Q ss_pred CCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhh-hhccCccccccccccccccccceeecCCCCCcceec
Q 003328 569 FNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEE-VLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFC 647 (829)
Q Consensus 569 l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 647 (829)
+++|+.|++++|.... ..|. .+..+++|++|++++|.--.. ++...+ .+++|++|++.+| +++.+
T Consensus 423 l~~L~~L~l~~n~l~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------~l~~L~~L~Ls~n-~l~~~- 488 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKI-DFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFA----------NTTNLTFLDLSKC-QLEQI- 488 (606)
T ss_dssp CTTCCEEECTTSCCEE-CCTT-TTTTCTTCCEEECTTCEEGGGEECSCCT----------TCTTCCEEECTTS-CCCEE-
T ss_pred cccCCEEECcCCCCCc-cchh-hhcCCCCCCEEECCCCcCCCcchHHhhc----------cCCCCCEEECCCC-cCCcc-
Confidence 6888888888887443 2343 345788888888888863322 233222 5788888888887 45555
Q ss_pred cCCCccccCCCcCeEEEeCCCCCcccccCCcccccccCCCCccccchhhhhhhhhhhhhhccccCcccccceeecccccc
Q 003328 648 NFTGNIIEMPVLCSLAIENCTDMETFISNSVVHATTDNKEPQKLTSEENFLLVHQVQPLFNEKVGEEAKDCIVFRELEYL 727 (829)
Q Consensus 648 ~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~p~~l~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~sL~~L 727 (829)
.+.....+++|++|++++| .++.+ .|..+.. +++|+.|
T Consensus 489 -~~~~~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~-----------------------------------l~~L~~L 526 (606)
T 3vq2_A 489 -SWGVFDTLHRLQLLNMSHN-NLLFL-----DSSHYNQ-----------------------------------LYSLSTL 526 (606)
T ss_dssp -CTTTTTTCTTCCEEECCSS-CCSCE-----EGGGTTT-----------------------------------CTTCCEE
T ss_pred -ChhhhcccccCCEEECCCC-cCCCc-----CHHHccC-----------------------------------CCcCCEE
Confidence 2344778888999999887 44444 2444443 6788888
Q ss_pred cccCCCCcccccCCCCccccC-cccEEeeccCCc
Q 003328 728 TLDCLPSLTSFSLGNYALEFP-SLEHVVVRQCPT 760 (829)
Q Consensus 728 ~l~~c~~L~~l~~~~~~~~~~-sL~~L~i~~C~~ 760 (829)
+++++. ++.+|... ..++ +|++|++.++|-
T Consensus 527 ~l~~N~-l~~~p~~~--~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 527 DCSFNR-IETSKGIL--QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ECTTSC-CCCEESCG--GGSCTTCCEEECCSCCC
T ss_pred ECCCCc-CcccCHhH--hhhcccCcEEEccCCCc
Confidence 888874 88887662 3455 588898888764
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-32 Score=320.74 Aligned_cols=583 Identities=16% Similarity=0.133 Sum_probs=354.6
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~ 101 (829)
+.++.+++++.++|..+. +++++|++++|. +..+|...|.++++|++|++++|.++.+ |..++++++||+|+++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQ----LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSC----CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCC----CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 578899999999997654 789999999998 6778877789999999999999999885 6778999999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
+|.+..+ ..|+++++|++|++++|.++.+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 158 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ-- 158 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC--
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc--
Confidence 9999988 46999999999999999999886 569999999999999987 44444433889999999999998765
Q ss_pred cccCCCccchhhh--cCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEEEccccccCCCCCCCccEEEeccCCccccc
Q 003328 179 KVEGGSNASLAEL--KGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTL 254 (829)
Q Consensus 179 ~~~~~~~~~~~~L--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~ 254 (829)
......+ ..+++|+.|+++++.+..++... .+.+|+.+.+......+ ..
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~---------------------~~ 211 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP---------------------SL 211 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH---------------------HH
T ss_pred ------ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh---------------------hh
Confidence 1122222 35678999999999887665432 45566665442111100 00
Q ss_pred hhhhhHHHhhhhheeEeeccccCccccccccCCCCCC--CCCcEEEEeecCCceEEecccCcccccccccccceeccccc
Q 003328 255 LENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGF--PRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLS 332 (829)
Q Consensus 255 l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~ 332 (829)
..........++++.|++.++.-.......+. .+ ++|++|+++++.- ..+... ....+++|+.|++.++.
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~---~l~~~~L~~L~Ls~n~l-~~~~~~----~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFL---GLKWTNLTMLDLSYNNL-NVVGND----SFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSCCCEECTTTTG---GGGGSCCCEEECTTSCC-CEECTT----TTTTCTTCCEEECCSCC
T ss_pred HHHHHHHhhhccccEEEccCCcccccChhHhh---ccCcCCCCEEECCCCCc-CccCcc----cccCcccccEeeCCCCc
Confidence 00000000124566666665532221112221 22 3366666666542 222110 12335556666665543
Q ss_pred cchhhhcCCCCCCCCCCCccEEEEecCCCCc-----cccch--HHHHhhcccceEEEecccCcceecccCCCCCCCcccc
Q 003328 333 NLETICDSQLTEDQSFSNLRIIEVKSCDKLK-----HLFSF--SMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGF 405 (829)
Q Consensus 333 ~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~-----~l~~~--~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~ 405 (829)
-- ..... ....+++|+.|++.++..-. .+|.. ..+..+++|++|+++++. +..+.
T Consensus 284 l~-~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~------------- 345 (680)
T 1ziw_A 284 IQ-HLFSH---SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK------------- 345 (680)
T ss_dssp BS-EECTT---TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-------------
T ss_pred cC-ccChh---hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-------------
Confidence 21 11110 12345555555555432110 00000 012233444444444332 11110
Q ss_pred cccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCC-CcceeecCCcc-ccCCCcc
Q 003328 406 NEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLP-TLTSFCLENYT-LEFPSLE 483 (829)
Q Consensus 406 ~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-~L~~~~~~~~~-~~~~~L~ 483 (829)
+..+..+++|+.|++.++. .+..++..... ...++|+
T Consensus 346 -----------------------------------------~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~ 384 (680)
T 1ziw_A 346 -----------------------------------------SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384 (680)
T ss_dssp -----------------------------------------TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCC
T ss_pred -----------------------------------------hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCc
Confidence 2234567888888888764 23333322111 1236788
Q ss_pred EEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCC
Q 003328 484 RVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQ 562 (829)
Q Consensus 484 ~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~ 562 (829)
.|++++|. ++.++.. ....++. |+.| +.++.-.....+. .+.++++|++|+++++. +..+...
T Consensus 385 ~L~L~~n~-l~~~~~~-~~~~l~~-L~~L~L~~N~l~~~~~~~-----------~~~~l~~L~~L~Ls~n~-l~~~~~~- 448 (680)
T 1ziw_A 385 ILNLTKNK-ISKIESD-AFSWLGH-LEVLDLGLNEIGQELTGQ-----------EWRGLENIFEIYLSYNK-YLQLTRN- 448 (680)
T ss_dssp EEECTTSC-CCEECTT-TTTTCTT-CCEEECCSSCCEEECCSG-----------GGTTCTTCCEEECCSCS-EEECCTT-
T ss_pred eEECCCCC-CCeEChh-hhhCCCC-CCEEeCCCCcCccccCcc-----------cccCcccccEEecCCCC-cceeChh-
Confidence 88888874 4444322 1234455 7777 6666432111110 12236778888887764 4444322
Q ss_pred CCCCCcCCCCcEEEEecCCCCc-cccchhhHHhccCCcEEEEecCcchhhhhcc-CccccccccccccccccceeecCCC
Q 003328 563 ALPVSFFNNLSDLVVDDCTNMS-SAIPANLLRCFNNLVLLEVRNCDSLEEVLHL-EELNADKEHIGPLFLELSLLGLIDL 640 (829)
Q Consensus 563 ~~~~~~l~~L~~L~i~~C~~L~-~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c 640 (829)
.+..+++|+.|+++++..-. ...|.. +..+++|+.|+++++. ++.++.. .. .+++|++|+++++
T Consensus 449 --~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~----------~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 449 --SFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNN-IANINDDMLE----------GLEKLEILDLQHN 514 (680)
T ss_dssp --TTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSC-CCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred --hhhcCcccccchhccccccccccCCcc-cccCCCCCEEECCCCC-CCcCChhhhc----------cccccCEEeCCCC
Confidence 23345788888887765321 113433 3577788888888765 4444331 11 4677888888765
Q ss_pred CCcceeccCC------CccccCCCcCeEEEeCCCCCcccccCCccccc-ccCCCCccccchhhhhhhhhhhhhhccccCc
Q 003328 641 PKLKRFCNFT------GNIIEMPVLCSLAIENCTDMETFISNSVVHAT-TDNKEPQKLTSEENFLLVHQVQPLFNEKVGE 713 (829)
Q Consensus 641 ~~L~~l~~~~------~~~~~~~sL~~L~i~~C~~L~~l~~~~~~p~~-l~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~ 713 (829)
. ++.++... .....+++|+.|+++++ .++.+ |.. +.
T Consensus 515 ~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i------~~~~~~----------------------------- 557 (680)
T 1ziw_A 515 N-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI------PVEVFK----------------------------- 557 (680)
T ss_dssp C-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC------CTTTTT-----------------------------
T ss_pred C-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC------CHHHcc-----------------------------
Confidence 3 44443210 11466778888888765 45554 221 22
Q ss_pred ccccceeecccccccccCCCCcccccCCCCccccCcccEEeeccCCcceeecCC-CC-CCCCceeeeccCCC
Q 003328 714 EAKDCIVFRELEYLTLDCLPSLTSFSLGNYALEFPSLEHVVVRQCPTMKIFSQG-GV-DAPKLNKVKPTEEE 783 (829)
Q Consensus 714 ~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~l~~~-~~-~~p~L~~l~i~~~~ 783 (829)
.+++|+.|+++++ +|+.++.+.. ..+++|++|+++++ +++.++.. .. .+++|+.+++.++.
T Consensus 558 ------~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 558 ------DLFELKIIDLGLN-NLNTLPASVF-NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ------TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ------cccCcceeECCCC-CCCcCCHhHh-CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 3789999999874 7888876543 35799999999998 67766653 33 67899999998754
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-32 Score=320.00 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=139.6
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCCCCcEEEc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTLCL 100 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L 100 (829)
-++++.++.++.++|..+. +++++|++++|. +..++...|.++++||+|++++|.+.. .|..+.++++|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNV----LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCC----CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCc----cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeC
Confidence 4577888888888887652 368899998888 566655557889999999999888876 4677888999999999
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCcc--ChhhhcCCCcccEEEccCCcc
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVI--APNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~l--p~~~l~~L~~L~~L~l~~~~~ 175 (829)
++|.+..+ ..++++++|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|.+
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK--GFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT--TCCCTTCCEEECCSSCC
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc--ccCCcccCEEEcccCcc
Confidence 99888766 6788899999999999888877 5668888999999998887 5554 43 45688899999888866
Q ss_pred ccccccCCCccchhhhcCCCCCc--EEEeecCCCCCcCCc-cccccccEEEE
Q 003328 176 QWDKVEGGSNASLAELKGLSKLT--TLEIHVWDAQILPQD-WVSVELQRYKI 224 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~~~~~-~~~~~L~~L~l 224 (829)
. ......++.+++|+ .|+++++.+..++.. +...+|+.+++
T Consensus 166 ~--------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 166 H--------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp C--------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred c--------ccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 4 23345566677777 778888777655443 23334444443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-31 Score=309.97 Aligned_cols=519 Identities=16% Similarity=0.130 Sum_probs=327.9
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL- 85 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l- 85 (829)
++..+|. ..++++++|++++|.+..+++ .+ ++++||+|++++|. +..+++..|.++++||+|++++|.++.+
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcCEeECCCCcccccC
Confidence 4455553 456899999999999998876 33 89999999999998 6677666679999999999999999986
Q ss_pred chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCc--cchhhhcCCCCCCEEeccCCCCCCccChhhhcC
Q 003328 86 PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIK--QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISK 161 (829)
Q Consensus 86 p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 161 (829)
|..++++++|++|++++|.+..+ ..++++++|++|++++|.++ .+|..++++++|++|++++|. +..++...++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhh
Confidence 88899999999999999999876 68999999999999999998 579999999999999999987 66665443666
Q ss_pred CCccc----EEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC--CcCCc-cccccccEEEEEEccccccCC
Q 003328 162 FSRLE----ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ--ILPQD-WVSVELQRYKICIGEARRIWP 234 (829)
Q Consensus 162 L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~w~ 234 (829)
+.+|+ +|+++++.+. ..........+|+.|+++++... .++.. ..+.+|+.+.+..+.......
T Consensus 176 l~~L~~~l~~L~l~~n~l~---------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPID---------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp HHHCTTCCCEEECTTCCCC---------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred hhccccccceeeccCCCcc---------eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 66655 8999998765 11122223337999999998764 12222 256777777765433211000
Q ss_pred CCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCc
Q 003328 235 VNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGR 314 (829)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 314 (829)
- ..... .. ..+... -.++.+.+............+. .+++|+.|.+.++.. ..+ +
T Consensus 247 l----------~~~~~--~~--~~~l~~--l~l~~l~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~-~~l---~-- 301 (606)
T 3vq2_A 247 L----------EIFEP--SI--MEGLCD--VTIDEFRLTYTNDFSDDIVKFH---CLANVSAMSLAGVSI-KYL---E-- 301 (606)
T ss_dssp C----------SCCCG--GG--GTTGGG--SEEEEEEECCCTTCCGGGGSCG---GGTTCSEEEEESCCC-CCC---C--
T ss_pred c----------cccCh--HH--hhhhhh--ccHhheeccccccccccccccc---cCCCCCEEEecCccc-hhh---h--
Confidence 0 00000 00 000000 1355555544444444333333 778888888887763 222 1
Q ss_pred ccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcceeccc
Q 003328 315 VRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGP 394 (829)
Q Consensus 315 ~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 394 (829)
....+++|++|++.++.- .. +|.. .+++|++|++.++..+...+ ...+++|++|+++++. +......
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~-----lp~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~~ 368 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQ-----FPTL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGCC 368 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SS-----CCCC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEEC
T ss_pred -hccccccCCEEEcccccC-cc-----cccC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcch
Confidence 234567788888888765 32 4434 77888888888886665542 2457888888888763 2222100
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeecCC
Q 003328 395 DREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLEN 474 (829)
Q Consensus 395 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 474 (829)
+.....+++|+.|++.++. ++.++ .
T Consensus 369 ----------------------------------------------------~~~~~~~~~L~~L~L~~n~-l~~~~--~ 393 (606)
T 3vq2_A 369 ----------------------------------------------------SYSDLGTNSLRHLDLSFNG-AIIMS--A 393 (606)
T ss_dssp ----------------------------------------------------CHHHHCCSCCCEEECCSCS-EEEEC--C
T ss_pred ----------------------------------------------------hhhhccCCcccEeECCCCc-cccch--h
Confidence 0112334455555555443 33333 1
Q ss_pred ccccCCCccEEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccchhhhhhhhccccCCcceEEeccCC
Q 003328 475 YTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFP 553 (829)
Q Consensus 475 ~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~ 553 (829)
....+++|+.|++++|. +...+.......++. |+.| +.+|.-....+. .+..+++|++|+++++.
T Consensus 394 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDG------------IFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp CCTTCTTCCEEECTTSE-EESTTTTTTTTTCTT-CCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCE
T ss_pred hccCCCCCCeeECCCCc-cCCccChhhhhcccc-CCEEECcCCCCCccchh------------hhcCCCCCCEEECCCCc
Confidence 22245555555555542 222211001123333 5555 444432211110 11237888888888864
Q ss_pred CceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhh-hccCcccccccccccccccc
Q 003328 554 RLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEV-LHLEELNADKEHIGPLFLEL 632 (829)
Q Consensus 554 ~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l-~~~~~~~~~~~~~~~~~~~L 632 (829)
-..... ...+..+++|+.|++++|. ++.+.|. .+..+++|++|++++|. +..+ +...+ .+++|
T Consensus 460 l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~----------~l~~L 523 (606)
T 3vq2_A 460 FKDNTL---SNVFANTTNLTFLDLSKCQ-LEQISWG-VFDTLHRLQLLNMSHNN-LLFLDSSHYN----------QLYSL 523 (606)
T ss_dssp EGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CSCEEGGGTT----------TCTTC
T ss_pred CCCcch---HHhhccCCCCCEEECCCCc-CCccChh-hhcccccCCEEECCCCc-CCCcCHHHcc----------CCCcC
Confidence 222121 1223456889999998884 4443343 44678899999999885 4443 33322 57889
Q ss_pred ceeecCCCCCcceeccCCCccccCC-CcCeEEEeCCCC
Q 003328 633 SLLGLIDLPKLKRFCNFTGNIIEMP-VLCSLAIENCTD 669 (829)
Q Consensus 633 ~~L~l~~c~~L~~l~~~~~~~~~~~-sL~~L~i~~C~~ 669 (829)
++|+++++. ++.+ +..+..++ +|+.|++.+++-
T Consensus 524 ~~L~l~~N~-l~~~---p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 524 STLDCSFNR-IETS---KGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CEEECTTSC-CCCE---ESCGGGSCTTCCEEECCSCCC
T ss_pred CEEECCCCc-Cccc---CHhHhhhcccCcEEEccCCCc
Confidence 999998875 7777 44466776 599999988654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-30 Score=303.33 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=148.1
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-C
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-L 85 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-l 85 (829)
++...|. ..++++++|++++|.+..+++ .+ ++++||+|++++|. +..+++..|.++++|++|++++|.++. .
T Consensus 23 ~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 23 GLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ----IYWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc----cceeChhhccCccccCeeeCCCCcccccC
Confidence 3444442 346789999999999998854 44 89999999999998 556655557999999999999999987 5
Q ss_pred chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCccChhhhcCC
Q 003328 86 PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVISKF 162 (829)
Q Consensus 86 p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 162 (829)
|..++.+++|++|++++|.++.+ ..++++++|++|++++|.++.++ ..+..+++|++|++++|. +..++...++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 77899999999999999999987 78999999999999999998762 344559999999999987 677766558999
Q ss_pred Cccc--EEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCC
Q 003328 163 SRLE--ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWD 206 (829)
Q Consensus 163 ~~L~--~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 206 (829)
++|+ +|++++|.+. ..........+|+.|++.++.
T Consensus 177 ~~L~~l~L~l~~n~l~---------~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIA---------GIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp TTCCSEEEECTTCCCC---------EECTTTTTTCEEEEEECTTCS
T ss_pred cccceeEEecCCCccC---------ccChhHhhhccccccccCCch
Confidence 9999 8999988765 111222234578999998765
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=290.08 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=74.3
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~ 101 (829)
++++-++.++.++|..+ .+++++|++++|. +..++...|.++++|++|++++|.++.++ ..+.++++||+|+++
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCC----CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCc----cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 34444444555555432 1345555555555 34444333455555555555555555432 334555555555555
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCC-ccChhhhcCCCcccEEEccCCcc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLV-VIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
+|.++.+ ..|+++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcc
Confidence 5555544 345555555555555555555543 35555555555555554211 23444 55555555555555544
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.9e-30 Score=293.95 Aligned_cols=485 Identities=15% Similarity=0.132 Sum_probs=236.3
Q ss_pred EEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEcccc
Q 003328 25 ISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWC 103 (829)
Q Consensus 25 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~ 103 (829)
.+.++++++++|..+. ++|++|++++|. +..++...|.++++||+|++++|+++.++ ..++.+++|++|++++|
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNK----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSC----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCccccccccCC-CCccEEECcCCc----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3444555555554332 455555555555 33333222455555555555555555432 34555555555555555
Q ss_pred CCCCc--ccccCCCCCcEEEccCCCCcc--chhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccc
Q 003328 104 QLEDV--AAIGQLKKLEILSFRGSDIKQ--LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 104 ~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 179 (829)
.+..+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+.
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--- 161 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--- 161 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---
Confidence 55544 235555555555555555542 23445555555555555554444444322555555555555555433
Q ss_pred ccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhh
Q 003328 180 VEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLEN 257 (829)
Q Consensus 180 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~ 257 (829)
......++.+++|+.|+++++....++... .+++|+.|++..+.....-....
T Consensus 162 -----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------- 216 (549)
T 2z81_A 162 -----NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL-------------------- 216 (549)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC--------------------
T ss_pred -----ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc--------------------
Confidence 122233444455555555555443333221 23444444443222110000000
Q ss_pred hhHHHhhhhheeEeeccccCccc----cccccCCCCCCCCCcEEEEeecCCceEEecc--cCcccccccccccceecccc
Q 003328 258 YGMKMLLKEAEEIHLIKLKGVQN----VVHELDDGEGFPRLKHLWVERCSEILHIVGS--VGRVRCTIFPLLESLSLWFL 331 (829)
Q Consensus 258 ~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~--~~~~~~~~~~~L~~L~L~~~ 331 (829)
......++++.|++.++.-... +...+ ..+++|+.+.+.+|.-.. +.+. ..+.....+++|+.|.+.++
T Consensus 217 -~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~---~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 217 -PVDEVSSPMKKLAFRGSVLTDESFNELLKLL---RYILELSEVEFDDCTLNG-LGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp -SSCCCCCCCCEEEEESCEEEHHHHHHHHGGG---GGCTTCCEEEEESCEEEC-CSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred -chhhhhhcccceeccccccchhHHHHHHHHh---hhhccccccccccccccc-cccccccchhhhhhhccccccccccc
Confidence 0000012333333333211100 01111 144555566555553110 0000 00011223444444444433
Q ss_pred ccchhhhcCCCCC-CCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCcceecccCCCCCCCccccccccc
Q 003328 332 SNLETICDSQLTE-DQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEITA 410 (829)
Q Consensus 332 ~~l~~~~~~~l~~-~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~~ 410 (829)
.--.......++. ...+++|++|++.++. ++.+|. .+...+++|++|+++++.-...++..
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------- 353 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKN---------------- 353 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHH----------------
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCc-cccCCH-HHHhcCccccEEEccCCccccccccc----------------
Confidence 2111000000000 0123566666666653 555442 23345666666666665322111100
Q ss_pred CCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeec-CCccccCCCccEEeecc
Q 003328 411 DDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCL-ENYTLEFPSLERVSLTH 489 (829)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~~~~~~~L~~L~i~~ 489 (829)
......+++|+.|+++++ .++.++. +.....+++|++|++++
T Consensus 354 ------------------------------------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 354 ------------------------------------SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp ------------------------------------HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred ------------------------------------hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCC
Confidence 011345677778887776 3433321 11123677888888888
Q ss_pred CCCcceecccccCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCcC
Q 003328 490 CPNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFF 569 (829)
Q Consensus 490 C~~l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l 569 (829)
| +++.+|.. +..+++|++|+++++. ++.++.. .+
T Consensus 397 N-~l~~lp~~--------------------------------------~~~~~~L~~L~Ls~N~-l~~l~~~------~~ 430 (549)
T 2z81_A 397 N-TFHPMPDS--------------------------------------CQWPEKMRFLNLSSTG-IRVVKTC------IP 430 (549)
T ss_dssp C-CCCCCCSC--------------------------------------CCCCTTCCEEECTTSC-CSCCCTT------SC
T ss_pred C-CCccCChh--------------------------------------hcccccccEEECCCCC-cccccch------hc
Confidence 7 45544321 1126778888888854 5544321 13
Q ss_pred CCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccC
Q 003328 570 NNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNF 649 (829)
Q Consensus 570 ~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 649 (829)
++|+.|++++|. ++.+ + ..+++|++|+++++. ++.+|... .+++|++|+++++ +++.+ .
T Consensus 431 ~~L~~L~Ls~N~-l~~~-~----~~l~~L~~L~Ls~N~-l~~ip~~~-----------~l~~L~~L~Ls~N-~l~~~--~ 489 (549)
T 2z81_A 431 QTLEVLDVSNNN-LDSF-S----LFLPRLQELYISRNK-LKTLPDAS-----------LFPVLLVMKISRN-QLKSV--P 489 (549)
T ss_dssp TTCSEEECCSSC-CSCC-C----CCCTTCCEEECCSSC-CSSCCCGG-----------GCTTCCEEECCSS-CCCCC--C
T ss_pred CCceEEECCCCC-hhhh-c----ccCChhcEEECCCCc-cCcCCCcc-----------cCccCCEEecCCC-ccCCc--C
Confidence 688899988884 4442 2 367889999999884 66666533 5788999999886 56665 2
Q ss_pred CCccccCCCcCeEEEeCCCC
Q 003328 650 TGNIIEMPVLCSLAIENCTD 669 (829)
Q Consensus 650 ~~~~~~~~sL~~L~i~~C~~ 669 (829)
+..+..+++|+.|++.+++-
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCB
T ss_pred HHHHhcCcccCEEEecCCCc
Confidence 33478899999999988764
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.9e-29 Score=288.15 Aligned_cols=494 Identities=18% Similarity=0.192 Sum_probs=293.4
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++..+|. ..++++++|++++|.+..+++. + .+++|++|++++|. +..++...|.++++||+|++++|.++.+|
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc----CCccCcccccCchhCCEEeCcCCcCCccC
Confidence 4444553 3567899999999999987643 3 89999999999998 67777777899999999999999999865
Q ss_pred -hhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCcc--chhhhcCCCCCCEEeccCCCCCCccChhhhcC
Q 003328 87 -SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQ--LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISK 161 (829)
Q Consensus 87 -~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 161 (829)
..++.+++|++|++++|.++.+ ..++++++|++|++++|.++. +|..++++++|++|++++|. +..++...++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc
Confidence 6799999999999999999988 369999999999999999885 79999999999999999987 66666544788
Q ss_pred CCcc----cEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC--CcCCcc-ccccccEEEEEEccccccCC
Q 003328 162 FSRL----EELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ--ILPQDW-VSVELQRYKICIGEARRIWP 234 (829)
Q Consensus 162 L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~w~ 234 (829)
+++| ++|+++++.+. ......+... +|+.|++.++... .++..+ .+.+++...+..+....
T Consensus 172 l~~L~~~~~~L~l~~n~l~--------~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--- 239 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMN--------FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--- 239 (570)
T ss_dssp HHTCTTCCCEEECTTCCCC--------EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---
T ss_pred hhccchhhhhcccCCCCce--------ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---
Confidence 8888 89999998765 1122233333 6999999876432 111111 44555555443221100
Q ss_pred CCCCCccEEEeccCCccccchhhhhHHHhhh--hheeEeeccccCccc-cccccCCCCCCCCCcEEEEeecCCceEEecc
Q 003328 235 VNSETSRLVWLHGLENVSTLLENYGMKMLLK--EAEEIHLIKLKGVQN-VVHELDDGEGFPRLKHLWVERCSEILHIVGS 311 (829)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~--~L~~L~L~~~~~~~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~ 311 (829)
. .....+.. ..+.. +. .++.+.+.++..... ....+ +.+++|+.|.+.++.- ..+
T Consensus 240 --~--~~l~~~~~----------~~~~~-l~~l~l~~l~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~l-~~l--- 297 (570)
T 2z63_A 240 --E--GNLEKFDK----------SALEG-LCNLTIEEFRLAYLDYYLDDIIDLF---NCLTNVSSFSLVSVTI-ERV--- 297 (570)
T ss_dssp --C--SSCEECCT----------TTTGG-GGGSEEEEEEEEETTEEESCSTTTT---GGGTTCSEEEEESCEE-CSC---
T ss_pred --c--hhhhhcch----------hhhcc-ccccchhhhhhhcchhhhhhchhhh---cCcCcccEEEecCccc-hhh---
Confidence 0 00000000 00000 01 233444443322211 11122 2556666666665531 111
Q ss_pred cCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCccee
Q 003328 312 VGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMM 391 (829)
Q Consensus 312 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 391 (829)
+.+ ...+ +|+.|++.++.-- .+| ...+++|++|.+.++......+. ..+++|++|+++++. +...
T Consensus 298 ~~~--~~~~-~L~~L~l~~n~~~------~l~-~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~ 362 (570)
T 2z63_A 298 KDF--SYNF-GWQHLELVNCKFG------QFP-TLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFK 362 (570)
T ss_dssp CBC--CSCC-CCSEEEEESCBCS------SCC-BCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEE
T ss_pred hhh--hccC-CccEEeeccCccc------ccC-cccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCcc
Confidence 111 1112 4555555444321 122 23444555555544432222211 234444444444432 1111
Q ss_pred cccCCCCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceee
Q 003328 392 VGPDREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFC 471 (829)
Q Consensus 392 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 471 (829)
.. .+.....+++|+.|++.++. ++.++
T Consensus 363 ~~----------------------------------------------------~~~~~~~~~~L~~L~l~~n~-l~~~~ 389 (570)
T 2z63_A 363 GC----------------------------------------------------CSQSDFGTTSLKYLDLSFNG-VITMS 389 (570)
T ss_dssp EE----------------------------------------------------EEHHHHTCSCCCEEECCSCS-EEEEE
T ss_pred cc----------------------------------------------------ccccccccCccCEEECCCCc-ccccc
Confidence 00 01122445666666666653 33333
Q ss_pred cCCccccCCCccEEeeccCCCcceecccccCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEEecc
Q 003328 472 LENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSH 551 (829)
Q Consensus 472 ~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 551 (829)
.. ...+++|++|++++|. ++..+. .. .+..+++|++|++++
T Consensus 390 ~~--~~~l~~L~~L~l~~n~-l~~~~~---~~---------------------------------~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 390 SN--FLGLEQLEHLDFQHSN-LKQMSE---FS---------------------------------VFLSLRNLIYLDISH 430 (570)
T ss_dssp EE--EETCTTCCEEECTTSE-EESCTT---SC---------------------------------TTTTCTTCCEEECTT
T ss_pred cc--ccccCCCCEEEccCCc-cccccc---hh---------------------------------hhhcCCCCCEEeCcC
Confidence 21 2356666666666653 222210 00 011277888888888
Q ss_pred CCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhh-hccCcccccccccccccc
Q 003328 552 FPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEV-LHLEELNADKEHIGPLFL 630 (829)
Q Consensus 552 c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l-~~~~~~~~~~~~~~~~~~ 630 (829)
|. +..... ..+..+++|+.|++++|......+|.. +..+++|++|++++|. ++.+ +...+ .++
T Consensus 431 n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~----------~l~ 494 (570)
T 2z63_A 431 TH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFN----------SLS 494 (570)
T ss_dssp SC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTT----------TCT
T ss_pred Cc-ccccch---hhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhh----------ccc
Confidence 65 333222 223446888888888886442224533 4578889999998886 4443 32222 478
Q ss_pred ccceeecCCCCCcceeccCCCccccCCCcCeEEEeCCC
Q 003328 631 ELSLLGLIDLPKLKRFCNFTGNIIEMPVLCSLAIENCT 668 (829)
Q Consensus 631 ~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 668 (829)
+|++|++.++ +++.+ .+.....+++|+.|++.+++
T Consensus 495 ~L~~L~l~~n-~l~~~--~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 495 SLQVLNMASN-QLKSV--PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSS-CCSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCCC-cCCCC--CHHHhhcccCCcEEEecCCc
Confidence 8999999887 46655 23336788999999998865
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=292.95 Aligned_cols=338 Identities=14% Similarity=0.127 Sum_probs=217.9
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCC-Ccc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-C
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELP-ERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-L 85 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-l 85 (829)
++...|. .++++++|++++|.+..++ ..+ ++++||+|++++|. ....++...|.++++||+|+|++|.+.. .
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~---~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY---TPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC---CCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC---CccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 4455554 6789999999999998764 344 89999999999996 4677755567999999999999999987 4
Q ss_pred chhhcCCCCCcEEEccccCCCC--cc--cccCCCCCcEEEccCCCCccc--hhhhcCCCCCCEEeccCCCCCCccChhhh
Q 003328 86 PSSLGRLINLQTLCLDWCQLED--VA--AIGQLKKLEILSFRGSDIKQL--PLEIGQLTRLQLLDLSNCSSLVVIAPNVI 159 (829)
Q Consensus 86 p~~l~~l~~Lr~L~L~~~~l~~--l~--~i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~~l 159 (829)
|..++.+++|++|++++|.+.. +. .++++++|++|++++|.++.+ +..++++++|++|++++|......+.. +
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-L 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-G
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-c
Confidence 8889999999999999998875 33 389999999999999988865 357899999999999998743434444 6
Q ss_pred cCC--CcccEEEccCCccccccccCCCccchhh----hcCCCCCcEEEeecCCCCC-cCCc----cccccccEEEEEEcc
Q 003328 160 SKF--SRLEELYMGDSFSQWDKVEGGSNASLAE----LKGLSKLTTLEIHVWDAQI-LPQD----WVSVELQRYKICIGE 228 (829)
Q Consensus 160 ~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~----L~~l~~L~~L~l~~~~~~~-~~~~----~~~~~L~~L~l~~~~ 228 (829)
+.+ ++|+.|++++|.+. +.....+.. +.+ .+|+.|+++++.... .+.. +...++..+.+....
T Consensus 169 ~~l~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLY-----SRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp HHHHHCSSCCCEECCSBSC-----CCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred ccccCCccceEECCCCccc-----cccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 666 88999999988765 211111111 111 248999999886532 2222 233455666543111
Q ss_pred ccccCCCCCCCccEEEeccCCccccchhhhhHHH-hhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceE
Q 003328 229 ARRIWPVNSETSRLVWLHGLENVSTLLENYGMKM-LLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILH 307 (829)
Q Consensus 229 ~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 307 (829)
....+.... + ..+....+.. ..++++.|+++++.-....... ++.+++|+.|+++++.- ..
T Consensus 243 ~~~~~~~~~-------l-------~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~i-~~ 304 (844)
T 3j0a_A 243 MGAGFGFHN-------I-------KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNKI-NK 304 (844)
T ss_dssp CBCSSSCSS-------S-------TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCCC-CE
T ss_pred ccccccccc-------c-------CCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCcC-CC
Confidence 000000000 0 0000001111 1256788888776432222222 33778888888887753 32
Q ss_pred EecccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 308 IVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 308 i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
+.. .....+++|+.|+++++.- ..+... ....+++|+.|++.++ +++.+++ ..+..+++|+.|+++++.
T Consensus 305 ~~~----~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 305 IAD----EAFYGLDNLQVLNLSYNLL-GELYSS---NFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp ECT----TTTTTCSSCCEEEEESCCC-SCCCSC---SCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred CCh----HHhcCCCCCCEEECCCCCC-CccCHH---HhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC
Confidence 211 1134577888888877642 221111 1446778888888776 4555554 234557788888887763
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=285.95 Aligned_cols=174 Identities=17% Similarity=0.113 Sum_probs=140.1
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCC-CCC-chhhcCCCCCcEEEc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHF-SSL-PSSLGRLINLQTLCL 100 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i-~~l-p~~l~~l~~Lr~L~L 100 (829)
+..+.++++++.+|. -.+++++|++++|. +..++...|.++++||+|++++|.. ..+ |..+.++++||+|+|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 567888899999998 56799999999999 5666555579999999999999954 445 778999999999999
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCcc-chhh--hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcc
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQ-LPLE--IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
++|.+..+ ..|+++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 99999876 789999999999999999885 5655 899999999999998843333333389999999999999877
Q ss_pred ccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 176 QWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
. +.....+..+.. ++|+.|+++.+.+.
T Consensus 161 ~-----~~~~~~l~~l~~-~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 161 F-----LVCEHELEPLQG-KTLSFFSLAANSLY 187 (844)
T ss_dssp C-----CCCSGGGHHHHH-CSSCCCEECCSBSC
T ss_pred C-----eeCHHHcccccC-CccceEECCCCccc
Confidence 5 222333443322 68888999987764
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.2e-27 Score=273.44 Aligned_cols=468 Identities=15% Similarity=0.118 Sum_probs=298.7
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++...|. ...+++++|++++|.+..+++ .+ .+++||+|++++|. +..++...|.++++|++|++++|.++.+|
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCCCccCccC
Confidence 3444443 345799999999999997754 34 89999999999999 66677666799999999999999999877
Q ss_pred hh-hcCCCCCcEEEccccCCCCc---ccccCCCCCcEEEccCCC-Cccch-hhhcCCCCCCEEeccCCCCCCccChhhhc
Q 003328 87 SS-LGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSD-IKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVIS 160 (829)
Q Consensus 87 ~~-l~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 160 (829)
.. ++.+++|++|++++|.++.+ ..++++++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~ 169 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LK 169 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hh
Confidence 65 99999999999999998853 679999999999999997 67776 57999999999999998844446665 89
Q ss_pred CCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC-----ccccccccEEEEEEccccccCCC
Q 003328 161 KFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ-----DWVSVELQRYKICIGEARRIWPV 235 (829)
Q Consensus 161 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~w~~ 235 (829)
++++|++|+++++... .......+.+++|+.|+++++.+..++. .....+|+.|++.......
T Consensus 170 ~l~~L~~L~l~~n~~~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---- 237 (549)
T 2z81_A 170 SIRDIHHLTLHLSESA--------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD---- 237 (549)
T ss_dssp TCSEEEEEEEECSBST--------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH----
T ss_pred ccccCceEecccCccc--------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch----
Confidence 9999999999988653 1111223568899999999998876521 1246788888876432210
Q ss_pred CCCCccEEEeccCCccccchh-hhhHHHhhhhheeEeeccccCcc--cccc-ccCCCCCCCCCcEEEEeecCCceEEecc
Q 003328 236 NSETSRLVWLHGLENVSTLLE-NYGMKMLLKEAEEIHLIKLKGVQ--NVVH-ELDDGEGFPRLKHLWVERCSEILHIVGS 311 (829)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~--~~~~-~l~~~~~~~~L~~L~l~~~~~l~~i~~~ 311 (829)
.... .......+.+++.+++.+|.-.. ++.. .......+++|+.|.+.++.....
T Consensus 238 -----------------~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~---- 296 (549)
T 2z81_A 238 -----------------ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF---- 296 (549)
T ss_dssp -----------------HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG----
T ss_pred -----------------hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh----
Confidence 0000 00111224678888888774221 1100 011134778999999987753211
Q ss_pred cCccc----ccccccccceeccccccchhhhcCCCCC-C-CCCCCccEEEEecCCCCccccc-hHHHHhhcccceEEEec
Q 003328 312 VGRVR----CTIFPLLESLSLWFLSNLETICDSQLTE-D-QSFSNLRIIEVKSCDKLKHLFS-FSMAKNLLRLQKVEVFF 384 (829)
Q Consensus 312 ~~~~~----~~~~~~L~~L~L~~~~~l~~~~~~~l~~-~-~~~~~L~~L~i~~C~~L~~l~~-~~~~~~l~~L~~L~i~~ 384 (829)
..+.. ...+++|+.|++.++. ++. +|. . +.+++|++|+++++.--...+. ......+++|++|++++
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~-l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSK-VFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSC-CCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred hhcccchhhhhhcccceEEEeccCc-ccc-----CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 00100 1235688999998864 332 221 1 3588999999998853322221 11134578888888888
Q ss_pred ccCcceecccCCCCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccC
Q 003328 385 CDDLEMMVGPDREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYL 464 (829)
Q Consensus 385 c~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 464 (829)
+. ++.+... +.....+++|+.|+++++
T Consensus 371 N~-l~~~~~~----------------------------------------------------~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 371 NH-LRSMQKT----------------------------------------------------GEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SC-CCCHHHH----------------------------------------------------HHHGGGCTTCCEEECTTC
T ss_pred Cc-ccccccc----------------------------------------------------hhhhhcCCCCCEEECCCC
Confidence 63 3322110 012355777888888877
Q ss_pred CCcceeecCCccccCCCccEEeeccCCCcceecccccCCCCCccceee-cccccccccccCCCccchhhhhhhhccccCC
Q 003328 465 PTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPCKVQVT-EKEEGELHHWEGNNLNSTIQKCYEEMIGFRD 543 (829)
Q Consensus 465 ~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~~L~~L-i~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~ 543 (829)
.++.++. ....+++|++|++++|. ++.++. ..|.+|+.| +.+|.-- ... ..+++
T Consensus 398 -~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l~~-----~~~~~L~~L~Ls~N~l~-~~~---------------~~l~~ 452 (549)
T 2z81_A 398 -TFHPMPD--SCQWPEKMRFLNLSSTG-IRVVKT-----CIPQTLEVLDVSNNNLD-SFS---------------LFLPR 452 (549)
T ss_dssp -CCCCCCS--CCCCCTTCCEEECTTSC-CSCCCT-----TSCTTCSEEECCSSCCS-CCC---------------CCCTT
T ss_pred -CCccCCh--hhcccccccEEECCCCC-cccccc-----hhcCCceEEECCCCChh-hhc---------------ccCCh
Confidence 5555543 22367788888888874 555532 122225555 4444211 000 12556
Q ss_pred cceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCc
Q 003328 544 IEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCD 607 (829)
Q Consensus 544 L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~ 607 (829)
|++|+++++ .++.++. ...+++|+.|+++++ .++. ++...++.+++|+.|++++++
T Consensus 453 L~~L~Ls~N-~l~~ip~-----~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 453 LQELYISRN-KLKTLPD-----ASLFPVLLVMKISRN-QLKS-VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSS-CCSSCCC-----GGGCTTCCEEECCSS-CCCC-CCTTGGGGCTTCCEEECCSSC
T ss_pred hcEEECCCC-ccCcCCC-----cccCccCCEEecCCC-ccCC-cCHHHHhcCcccCEEEecCCC
Confidence 666666664 3444322 123466666666665 3333 233334456666666665554
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5e-27 Score=273.79 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=38.0
Q ss_pred cccCCc---cccCC--CCCCcEEEcCCCCCC-CCCCcc-CCCCCcEEEeecCC
Q 003328 8 ADVEKK---MEETI--RKDPIAISLPQRDIQ-ELPERL-QCPNLQLFLLITKG 53 (829)
Q Consensus 8 ~~~~~~---~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~ 53 (829)
.+.+.| ++|.. ..+++.|+++++.+. .+|+.+ ++++||+|++++|.
T Consensus 64 ~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 64 KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence 467788 77743 358999999999998 677766 89999999999985
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=7.7e-25 Score=257.10 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=137.3
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~ 101 (829)
++.+-++.+++++|..+. +++++|++++|. +..+|...|.++++||+|+|++|.|+.+|+ .|.++++|++|+|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence 455666667888887552 478999999998 778887667999999999999999988765 57889999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCc--cChhhhcCCCcccEEEccCCccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVV--IAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|+++.+ ..|+++.+|++|++++|.++.+|.. ++++++|++|++++|. +.. +|.. ++.+++|++|++++|.+.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccc
Confidence 9998877 5689999999999999999888764 8899999999999887 443 4554 788999999999988765
Q ss_pred cccccCCCccchhhhcCCC-CCcEEEeecCCCCCcCCc
Q 003328 177 WDKVEGGSNASLAELKGLS-KLTTLEIHVWDAQILPQD 213 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~~~~~~~~~ 213 (829)
+.....+..+.+++ ....++++.+.+..++..
T Consensus 187 -----~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 187 -----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp -----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred -----ccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 22233445555544 234677777776655443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=257.49 Aligned_cols=463 Identities=12% Similarity=0.076 Sum_probs=273.3
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~ 101 (829)
+++++++++++.+|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY----ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC----CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc----ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 689999999999997665 899999999998 6677765679999999999999999886 7789999999999999
Q ss_pred ccCCCCcccccCCCCCcEEEccCCCCcc--chhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcc--cEEEccCCcccc
Q 003328 102 WCQLEDVAAIGQLKKLEILSFRGSDIKQ--LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRL--EELYMGDSFSQW 177 (829)
Q Consensus 102 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~~~ 177 (829)
+|.++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +... . ++.+++| ++|++++|.+.
T Consensus 78 ~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~--~-~~~l~~L~L~~L~l~~n~l~- 151 (520)
T 2z7x_B 78 HNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS--S-VLPIAHLNISKVLLVLGETY- 151 (520)
T ss_dssp SSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG--G-GGGGTTSCEEEEEEEECTTT-
T ss_pred CCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh--h-ccccccceeeEEEeeccccc-
Confidence 9999888333 89999999999999885 57889999999999999877 4432 2 6677777 99999888661
Q ss_pred ccccCCCccchhhhcCCCC-CcEEEeecCCCCC-cCCc--cccccccEEEEEEccccccCCCCCCCccEEEeccCCcccc
Q 003328 178 DKVEGGSNASLAELKGLSK-LTTLEIHVWDAQI-LPQD--WVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVST 253 (829)
Q Consensus 178 ~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~ 253 (829)
+ ....+..+..+.. .-.+++..+.... ++.. ..+++|+.++++.+....
T Consensus 152 ----~-~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 204 (520)
T 2z7x_B 152 ----G-EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN---------------------- 204 (520)
T ss_dssp ----T-SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT----------------------
T ss_pred ----c-cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc----------------------
Confidence 0 1122333444332 1123333433321 1111 123334444333221000
Q ss_pred chhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceecccccc
Q 003328 254 LLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSN 333 (829)
Q Consensus 254 ~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~ 333 (829)
.+......++. ++.+++|+.|.+.++.-....+ .........++|+.|+++++.-
T Consensus 205 --------------------~~~~~~~~~~~---l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 205 --------------------KCSYFLSILAK---LQTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp --------------------TTHHHHHHHHG---GGGCTTCCEEEEEEEEEEHHHH--HHHHHHHHTSSCSEEEEEEEEE
T ss_pred --------------------ccceeecchhh---hccccchhhccccccccCHHHH--HHHHHHhhhCcccEEEeecccc
Confidence 00001111222 2367778888887664111000 0000011234777787777643
Q ss_pred chhhhcCCCC-CCCCCCCccEEEEecCCCCccccchHHHHhh--cccceEEEecccCcceecccCCCCCCCccccccccc
Q 003328 334 LETICDSQLT-EDQSFSNLRIIEVKSCDKLKHLFSFSMAKNL--LRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEITA 410 (829)
Q Consensus 334 l~~~~~~~l~-~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l--~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~~ 410 (829)
-..++...+. ..+.+++|+.+++.++.- .+|...+...+ ++|+.|+++++.- .....
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~----------------- 319 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLC----------------- 319 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCC-----------------
T ss_pred cCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-ccccc-----------------
Confidence 2121111000 015678888888887754 55532222222 5689999988752 21110
Q ss_pred CCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeeccCCCcceeecCCccccCCCccEEeeccC
Q 003328 411 DDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHC 490 (829)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 490 (829)
...+++|+.|+++++.--...+. ....+++|++|++++|
T Consensus 320 ---------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 320 ---------------------------------------PSKISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMN 358 (520)
T ss_dssp ---------------------------------------CSSCCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSS
T ss_pred ---------------------------------------hhhCCcccEEEeECCccChhhhh--hhccCCCCCEEEccCC
Confidence 12456677777766632221221 1236777888887776
Q ss_pred CCcceecccccCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCcee-eccCCCCCCCcC
Q 003328 491 PNMKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLRE-IWHGQALPVSFF 569 (829)
Q Consensus 491 ~~l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~l 569 (829)
. ++.++. .|. .+..+++|++|+++++. ++. ++... ...+
T Consensus 359 ~-l~~l~~------~~~-----------------------------~~~~l~~L~~L~Ls~N~-l~~~l~~~~---~~~l 398 (520)
T 2z7x_B 359 Q-LKELSK------IAE-----------------------------MTTQMKSLQQLDISQNS-VSYDEKKGD---CSWT 398 (520)
T ss_dssp C-CCBHHH------HHH-----------------------------HHTTCTTCCEEECCSSC-CBCCGGGCS---CCCC
T ss_pred c-cCcccc------chH-----------------------------HHhhCCCCCEEECCCCc-CCcccccch---hccC
Confidence 3 332210 000 01126667777777644 333 43221 2234
Q ss_pred CCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccC
Q 003328 570 NNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNF 649 (829)
Q Consensus 570 ~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 649 (829)
++|+.|++++|.--.. .|..+ .++|+.|++++|. ++.+|.... .+++|++|++.++ +++.+
T Consensus 399 ~~L~~L~Ls~N~l~~~-~~~~l---~~~L~~L~Ls~N~-l~~ip~~~~----------~l~~L~~L~L~~N-~l~~l--- 459 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDT-IFRCL---PPRIKVLDLHSNK-IKSIPKQVV----------KLEALQELNVASN-QLKSV--- 459 (520)
T ss_dssp TTCCEEECCSSCCCGG-GGGSC---CTTCCEEECCSSC-CCCCCGGGG----------GCTTCCEEECCSS-CCCCC---
T ss_pred ccCCEEECcCCCCCcc-hhhhh---cccCCEEECCCCc-ccccchhhh----------cCCCCCEEECCCC-cCCcc---
Confidence 6777777777753332 33322 1577777777774 555554332 4677788888776 46666
Q ss_pred CCc-cccCCCcCeEEEeCCC
Q 003328 650 TGN-IIEMPVLCSLAIENCT 668 (829)
Q Consensus 650 ~~~-~~~~~sL~~L~i~~C~ 668 (829)
+.. ...+++|++|++.+++
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 333 6677888888887764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-25 Score=266.64 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred cccCC--CCCCcEEEcCCCCCC-CCCCcc-CCCCCcEEEe-ecCCCcc--------------------------------
Q 003328 14 MEETI--RKDPIAISLPQRDIQ-ELPERL-QCPNLQLFLL-ITKGIAP-------------------------------- 56 (829)
Q Consensus 14 ~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~~~~-------------------------------- 56 (829)
++|.. ..+++.|+|+++++. .+|+.+ ++++||+|++ ++|....
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~ 394 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence 77743 368999999999998 788766 9999999999 6653100
Q ss_pred -----------------------------------------cccccchhhhcCCCCccEEEecCCCCCC-----------
Q 003328 57 -----------------------------------------VSMQISDLFFEGTEELKVLSLIGIHFSS----------- 84 (829)
Q Consensus 57 -----------------------------------------~~~~lp~~~~~~l~~Lr~L~L~~~~i~~----------- 84 (829)
.+..+|.. |+++++|++|+|++|.++.
T Consensus 395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 00114444 3556666666666665555
Q ss_pred -------Cchhhc--CCCCCcEEEccccCCC-Cc-ccccCCCCCcEEEccCCC-Ccc--chhhhcCCC-------CCCEE
Q 003328 85 -------LPSSLG--RLINLQTLCLDWCQLE-DV-AAIGQLKKLEILSFRGSD-IKQ--LPLEIGQLT-------RLQLL 143 (829)
Q Consensus 85 -------lp~~l~--~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L 143 (829)
+|+.++ ++++|++|+|++|.+. .+ ..++++++|++|++++|. ++. +|..++++. +|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 555555 5666666666666533 33 555666666666666664 553 555554444 66666
Q ss_pred eccCCCCCCccCh--hhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 144 DLSNCSSLVVIAP--NVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 144 ~l~~~~~l~~lp~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
++++|. +..+|. . ++++++|++|++++|.+. .+..++.+++|+.|++++|.+..+|
T Consensus 554 ~Ls~N~-L~~ip~~~~-l~~L~~L~~L~Ls~N~l~----------~lp~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 554 YMGYNN-LEEFPASAS-LQKMVKLGLLDCVHNKVR----------HLEAFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp ECCSSC-CCBCCCHHH-HTTCTTCCEEECTTSCCC----------BCCCCCTTSEESEEECCSSCCSCCC
T ss_pred EeeCCc-CCccCChhh-hhcCCCCCEEECCCCCcc----------cchhhcCCCcceEEECcCCccccch
Confidence 666555 335555 3 556666666666555432 1114455555555555555554443
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=5.1e-25 Score=258.63 Aligned_cols=162 Identities=23% Similarity=0.248 Sum_probs=135.0
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++...|+ +.+.++++|++++|.|+.+++. + ++++||+|++++|. +..+|+..|.++++|++|+|++|+++.+|
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4445552 4567999999999999999853 3 89999999999999 78888887899999999999999999987
Q ss_pred h-hhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCcc--chhhhcCCCCCCEEeccCCCCCCccChhhhcC
Q 003328 87 S-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQ--LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISK 161 (829)
Q Consensus 87 ~-~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 161 (829)
. .|.++++|++|++++|+++.+ ..|+++++|++|++++|.++. +|..++++++|++|++++|. +..++...+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccc
Confidence 5 579999999999999999988 469999999999999999874 57889999999999999987 66665543555
Q ss_pred CCccc----EEEccCCccc
Q 003328 162 FSRLE----ELYMGDSFSQ 176 (829)
Q Consensus 162 L~~L~----~L~l~~~~~~ 176 (829)
+.+++ .++++.+.+.
T Consensus 196 L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp HHTCTTCCCEEECTTCCCC
T ss_pred hhhhhhhhhhhhcccCccc
Confidence 54443 5677666543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=8.8e-26 Score=258.14 Aligned_cols=440 Identities=12% Similarity=0.070 Sum_probs=266.5
Q ss_pred cEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEE
Q 003328 45 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILS 121 (829)
Q Consensus 45 r~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~ 121 (829)
++|++++|. +..+|..++ ++|++|++++|.++.++ ..+.++++|++|++++|+++.+ ..|+++++|++|+
T Consensus 3 ~~l~ls~n~----l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNG----LIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSC----CSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCC----ccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 689999998 678897653 89999999999999866 6799999999999999999977 6899999999999
Q ss_pred ccCCCCccchhhhcCCCCCCEEeccCCCCCC-ccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCC--c
Q 003328 122 FRGSDIKQLPLEIGQLTRLQLLDLSNCSSLV-VIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKL--T 198 (829)
Q Consensus 122 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L--~ 198 (829)
+++|.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+. .. .+..+++| +
T Consensus 76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~--------~~---~~~~l~~L~L~ 141 (520)
T 2z7x_B 76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE--------KS---SVLPIAHLNIS 141 (520)
T ss_dssp CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC--------GG---GGGGGTTSCEE
T ss_pred cCCCceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc--------hh---hccccccceee
Confidence 999999999987 89999999999988333 35666 899999999999998765 12 33444555 9
Q ss_pred EEEeecCCC--CC-cCCcccccccc--EEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeec
Q 003328 199 TLEIHVWDA--QI-LPQDWVSVELQ--RYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLI 273 (829)
Q Consensus 199 ~L~l~~~~~--~~-~~~~~~~~~L~--~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~ 273 (829)
.|+++++.+ .. .|.. +.+++ .+++ ++.
T Consensus 142 ~L~l~~n~l~~~~~~~~~--l~~l~~~~l~l----------------------------------------------~l~ 173 (520)
T 2z7x_B 142 KVLLVLGETYGEKEDPEG--LQDFNTESLHI----------------------------------------------VFP 173 (520)
T ss_dssp EEEEEECTTTTSSCCTTT--TTTCCEEEEEE----------------------------------------------ECC
T ss_pred EEEeeccccccccccccc--ccccccceEEE----------------------------------------------Eec
Confidence 999998876 22 2222 12222 2221 111
Q ss_pred cccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccE
Q 003328 274 KLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRI 353 (829)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~ 353 (829)
+......+ .... ...+++|+.|+++++..... |..+... ++..+.+++|+.
T Consensus 174 ~n~~~~~~-~~~~-~~~l~~L~~L~l~~n~~~~~-----------------------~~~~~~~----~~~l~~l~~L~~ 224 (520)
T 2z7x_B 174 TNKEFHFI-LDVS-VKTVANLELSNIKCVLEDNK-----------------------CSYFLSI----LAKLQTNPKLSN 224 (520)
T ss_dssp SSSCCCCC-CCCC-CTTCSEEEECCEEECCSTTT-----------------------THHHHHH----HHGGGGCTTCCE
T ss_pred cCcchhhh-hhhh-hhcccceeeccccccccccc-----------------------cceeecc----hhhhccccchhh
Confidence 11111111 1111 23566777777776541100 0001110 112345667777
Q ss_pred EEEecCCCCccccchHHH--HhhcccceEEEecccCcceecccCCCCCCCcccccccccCCCCCCCCCCCCceeeeeecc
Q 003328 354 IEVKSCDKLKHLFSFSMA--KNLLRLQKVEVFFCDDLEMMVGPDREKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSR 431 (829)
Q Consensus 354 L~i~~C~~L~~l~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~ 431 (829)
|++.++. +.+....... ...++|++|++++|.--..++..... ...+....|+.+++++
T Consensus 225 L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~------------------~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 225 LTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD------------------YSGTSLKALSIHQVVS 285 (520)
T ss_dssp EEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC------------------CCSCCCCEEEEEEEEE
T ss_pred ccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh------------------cccccCceeEeccccc
Confidence 7776653 2211110111 12357888888776421122211000 0001123344444444
Q ss_pred CcchhhHHhhhccccc-cccccc---CccceEeeccCCCcceeecCCccccCCCccEEeeccCCCcceecccccCCCCCc
Q 003328 432 CDKIEEIIRHVGEEVK-ENRIAF---GKLKVLILNYLPTLTSFCLENYTLEFPSLERVSLTHCPNMKTFSHRILSIPKPC 507 (829)
Q Consensus 432 C~~L~~l~~~~~~~~~-~~~~~~---~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~~~~~~~~~~l~~ 507 (829)
+.- .+ + .....+ ++|+.|.+.++.- ..... ...+++|++|++++|. ++.. .|.
T Consensus 286 n~~--~~--------p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~Ls~n~-l~~~--------~~~ 342 (520)
T 2z7x_B 286 DVF--GF--------PQSYIYEIFSNMNIKNFTVSGTRM-VHMLC---PSKISPFLHLDFSNNL-LTDT--------VFE 342 (520)
T ss_dssp CCC--CS--------CTHHHHHHHHTCCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSSC-CCTT--------TTT
T ss_pred cce--ec--------chhhhhcccccCceeEEEcCCCcc-ccccc---hhhCCcccEEEeECCc-cChh--------hhh
Confidence 331 10 0 000111 3466666666532 22211 1255666666666653 2221 000
Q ss_pred cceeecccccccccccCCCccchhhhhhhhccccCCcceEEeccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCcccc
Q 003328 508 KVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQLSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAI 587 (829)
Q Consensus 508 ~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~ 587 (829)
.+..+++|++|+++++. ++.+... ...+..+++|+.|++++|.-... +
T Consensus 343 -----------------------------~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~-l 390 (520)
T 2z7x_B 343 -----------------------------NCGHLTELETLILQMNQ-LKELSKI-AEMTTQMKSLQQLDISQNSVSYD-E 390 (520)
T ss_dssp -----------------------------TCCCCSSCCEEECCSSC-CCBHHHH-HHHHTTCTTCCEEECCSSCCBCC-G
T ss_pred -----------------------------hhccCCCCCEEEccCCc-cCccccc-hHHHhhCCCCCEEECCCCcCCcc-c
Confidence 11237889999999864 4432110 01123468999999999875543 4
Q ss_pred chhhHHhccCCcEEEEecCcchhhhhccCccccccccccccccccceeecCCCCCcceeccCCCccccCCCcCeEEEeCC
Q 003328 588 PANLLRCFNNLVLLEVRNCDSLEEVLHLEELNADKEHIGPLFLELSLLGLIDLPKLKRFCNFTGNIIEMPVLCSLAIENC 667 (829)
Q Consensus 588 p~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C 667 (829)
|...+..+++|++|++++|.--..++.. .+++|++|+++++ +++.+ +.....+++|++|++++|
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------l~~~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRC------------LPPRIKVLDLHSN-KIKSI---PKQVVKLEALQELNVASN 454 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGS------------CCTTCCEEECCSS-CCCCC---CGGGGGCTTCCEEECCSS
T ss_pred ccchhccCccCCEEECcCCCCCcchhhh------------hcccCCEEECCCC-ccccc---chhhhcCCCCCEEECCCC
Confidence 6555567899999999998733333331 2479999999888 56766 555679999999999997
Q ss_pred CCCccc
Q 003328 668 TDMETF 673 (829)
Q Consensus 668 ~~L~~l 673 (829)
.++.+
T Consensus 455 -~l~~l 459 (520)
T 2z7x_B 455 -QLKSV 459 (520)
T ss_dssp -CCCCC
T ss_pred -cCCcc
Confidence 56666
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.3e-24 Score=240.15 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=155.6
Q ss_pred CCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEE
Q 003328 19 RKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 98 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L 98 (829)
++++++|++.++.+..+|....+++|++|++++|. +..++. |.++++|++|++++|.+..++. ++++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ----LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCc----cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 56899999999999999876689999999999998 667776 6899999999999999998887 9999999999
Q ss_pred EccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 99 CLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 99 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
++++|.++.+..+.++++|++|++++|.+..+| .++++++|++|++.+ . +..++. ++++++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS-- 190 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC--
Confidence 999999998866999999999999999988887 489999999999974 2 444544 889999999999998764
Q ss_pred cccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEE
Q 003328 179 KVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKIC 225 (829)
Q Consensus 179 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 225 (829)
.+..+..+++|+.|+++++.+..++....+++|+.|+++
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred --------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence 234577888999999999888766554456677777664
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=5e-24 Score=245.68 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=79.2
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 100 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L 100 (829)
.+++++++++++.+|..+. ++|++|++++|. +..++...|.++++||+|++++|.++.+ |..+..+++|++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNS----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSC----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCC----ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3566666666666665432 566666666665 4445443456666666666666666553 445566666666666
Q ss_pred cccCCCCcccccCCCCCcEEEccCCCCccch--hhhcCCCCCCEEeccCCCCCCccChhhhcCCCcc--cEEEccCCcc
Q 003328 101 DWCQLEDVAAIGQLKKLEILSFRGSDIKQLP--LEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRL--EELYMGDSFS 175 (829)
Q Consensus 101 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~ 175 (829)
++|.++.+... .+++|++|++++|.++.+| ..++++++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 66666555222 5666666666666655442 456666666666666554 22221 2333333 5565555544
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.2e-24 Score=257.82 Aligned_cols=178 Identities=13% Similarity=0.225 Sum_probs=146.5
Q ss_pred CCCcc-CCCCCcEEEeecCCCccccc-----------------ccchhh-hcCCCCccEEEecCCCCC-CCchhhcCCCC
Q 003328 35 LPERL-QCPNLQLFLLITKGIAPVSM-----------------QISDLF-FEGTEELKVLSLIGIHFS-SLPSSLGRLIN 94 (829)
Q Consensus 35 l~~~~-~~~~Lr~L~l~~~~~~~~~~-----------------~lp~~~-~~~l~~Lr~L~L~~~~i~-~lp~~l~~l~~ 94 (829)
+|..+ ++++|++|++++|. ... .+|+.+ |.++++|++|++++|.+. .+|..++++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~---Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCc---CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 66655 89999999999999 333 288875 349999999999999865 59999999999
Q ss_pred CcEEEccccC-CCC--c-ccccCC-------CCCcEEEccCCCCccchh--hhcCCCCCCEEeccCCCCCCccChhhhcC
Q 003328 95 LQTLCLDWCQ-LED--V-AAIGQL-------KKLEILSFRGSDIKQLPL--EIGQLTRLQLLDLSNCSSLVVIAPNVISK 161 (829)
Q Consensus 95 Lr~L~L~~~~-l~~--l-~~i~~L-------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 161 (829)
|++|++++|+ ++. + ..++++ ++|++|++++|.++.+|. .++++++|++|++++|. +..+| . +++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcC
Confidence 9999999998 775 4 555555 499999999999999999 89999999999999988 66899 4 899
Q ss_pred CCcccEEEccCCccccccccCCCccchhhhcCCCC-CcEEEeecCCCCCcCCccc---cccccEEEEEEc
Q 003328 162 FSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSK-LTTLEIHVWDAQILPQDWV---SVELQRYKICIG 227 (829)
Q Consensus 162 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~ 227 (829)
+++|++|++++|.+. .....+.++++ |+.|+++.|.+..+|..+. ..+|+.|+++.+
T Consensus 594 L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp TSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCC
Confidence 999999999999764 23345777788 9999999999988876542 234777766533
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1e-24 Score=254.25 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=84.8
Q ss_pred cchhhhcCCCCccEEEecCCCCCC------------------Cchhhc--CCCCCcEEEccccCCC-Cc-ccccCCCCCc
Q 003328 61 ISDLFFEGTEELKVLSLIGIHFSS------------------LPSSLG--RLINLQTLCLDWCQLE-DV-AAIGQLKKLE 118 (829)
Q Consensus 61 lp~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~l~--~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~ 118 (829)
+|.. |+++++|++|++++|.++. +|..++ ++++|++|++++|.+. .+ ..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5554 3566666666666666655 666655 6666666666666543 33 5566666666
Q ss_pred EEEccCCC-Ccc--chhhhcCC------CCCCEEeccCCCCCCccCh--hhhcCCCcccEEEccCCccccccccCCCccc
Q 003328 119 ILSFRGSD-IKQ--LPLEIGQL------TRLQLLDLSNCSSLVVIAP--NVISKFSRLEELYMGDSFSQWDKVEGGSNAS 187 (829)
Q Consensus 119 ~L~l~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~~l~~lp~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 187 (829)
+|++++|. ++. +|..++++ ++|++|++++|. +..+|. . ++++++|++|++++|.+. +.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~-----g~---- 345 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLE-----GK---- 345 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCE-----EE----
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCc-----cc----
Confidence 66666665 553 56555554 666666666655 345555 3 566666666666655443 11
Q ss_pred hhhhcCCCCCcEEEeecCCCCCcCCcc-cccc-ccEEEEE
Q 003328 188 LAELKGLSKLTTLEIHVWDAQILPQDW-VSVE-LQRYKIC 225 (829)
Q Consensus 188 ~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~ 225 (829)
+..++.+++|+.|++++|.+..+|..+ .+++ |+.|+++
T Consensus 346 ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 346 LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp CCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred hhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 113444555666666665555554433 3444 5555543
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.6e-24 Score=248.04 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=124.0
Q ss_pred cCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCCC
Q 003328 39 LQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLK 115 (829)
Q Consensus 39 ~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~ 115 (829)
..+...++++++++. +..+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|.++.+ ..|++++
T Consensus 28 ~~~~~~~~l~ls~~~----L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 28 FSNELESMVDYSNRN----LTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp -----CCEEECTTSC----CCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cccCCCcEEEcCCCC----CccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 356667999999998 67799765 389999999999999876 5899999999999999999977 6799999
Q ss_pred CCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccC--hhhhcCCCcccEEEccCCccccccccCCCccchhhhcC
Q 003328 116 KLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIA--PNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKG 193 (829)
Q Consensus 116 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 193 (829)
+|++|++++|.++.+|.. .+++|++|++++|. +..++ .. ++++++|++|+++++.+. ...+..+..
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~--------~~~~~~l~~ 168 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKE-FGNLTKLTFLGLSAAKFR--------QLDLLPVAH 168 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGG-GGGCTTCCEEEEECSBCC--------TTTTGGGTT
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHh-hcccCcccEEecCCCccc--------cCchhhhhh
Confidence 999999999999999987 89999999999988 66654 44 899999999999998775 234455555
Q ss_pred CCCCcEEEeecCCC
Q 003328 194 LSKLTTLEIHVWDA 207 (829)
Q Consensus 194 l~~L~~L~l~~~~~ 207 (829)
+ +|+.|+++++.+
T Consensus 169 L-~L~~L~L~~n~l 181 (562)
T 3a79_B 169 L-HLSCILLDLVSY 181 (562)
T ss_dssp S-CEEEEEEEESSC
T ss_pred c-eeeEEEeecccc
Confidence 5 569999999877
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.7e-23 Score=224.39 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 18 IRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
.++++++|+++++.+..++....+++|++|++++|. +..++. |.++++|++|++++|.++.+| .+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~----i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ----ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCc----cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 345566666666666555543455666666666655 344444 455666666666666555554 3555666666
Q ss_pred EEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccc
Q 003328 98 LCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQW 177 (829)
Q Consensus 98 L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 177 (829)
|++++|.+..+..+.++++|++|++++|.....+..++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc-
Confidence 6666665555533556666666666665333222335556666666666554 344433 455566666666555443
Q ss_pred ccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 178 DKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 178 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
.+..+..+++|+.|+++++.+.
T Consensus 191 ---------~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 191 ---------DISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCCC
T ss_pred ---------ccccccCCCccceeecccCCCC
Confidence 1112444555555555554443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3e-23 Score=224.03 Aligned_cols=292 Identities=15% Similarity=0.197 Sum_probs=197.0
Q ss_pred CCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc
Q 003328 29 QRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV 108 (829)
Q Consensus 29 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l 108 (829)
...+..+.....+++|++|++.++. +..++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.+
T Consensus 31 ~~~~~~~~~~~~l~~L~~L~l~~~~----i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 31 KASVTDVVTQEELESITKLVVAGEK----VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp CSCTTSEECHHHHTTCSEEECCSSC----CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred ccccCCcccchhcccccEEEEeCCc----cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc
Confidence 3344444444467788888888887 566664 5788888888888888888876 88888888888888888888
Q ss_pred ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccch
Q 003328 109 AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASL 188 (829)
Q Consensus 109 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 188 (829)
..+.++++|++|++++|.++.+|. +.++++|++|++++|.....++. +..+++|++|++++|.+. .+
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~----------~~ 170 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK----------DV 170 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC----------CC
T ss_pred hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC----------Cc
Confidence 778888888888888888888876 88888888888888876666554 788888888888887654 12
Q ss_pred hhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhhe
Q 003328 189 AELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAE 268 (829)
Q Consensus 189 ~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~ 268 (829)
..+..+++|+.|+++++.+..++....+++|+.+++..+.... +.. ...+++|+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~---~~~~~~L~ 224 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD-----------------------ITP---VANMTRLN 224 (347)
T ss_dssp GGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-----------------------CGG---GGGCTTCC
T ss_pred hhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC-----------------------Cch---hhcCCcCC
Confidence 2266778888888888888777665567788887765332211 000 11245677
Q ss_pred eEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCCCCCCC
Q 003328 269 EIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSF 348 (829)
Q Consensus 269 ~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~ 348 (829)
+|++.++.- +.+.. +..+++|++|+++++. +..+ .....+++|+.|+++++. ++.+ +....+
T Consensus 225 ~L~l~~n~l-~~~~~----~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~l 286 (347)
T 4fmz_A 225 SLKIGNNKI-TDLSP----LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSNQ-ISDI-----SVLNNL 286 (347)
T ss_dssp EEECCSSCC-CCCGG----GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSSC-CCCC-----GGGGGC
T ss_pred EEEccCCcc-CCCcc----hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCCc-cCCC-----hhhcCC
Confidence 777766532 22111 3366777777777664 2221 123456677777777663 2221 224466
Q ss_pred CCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 349 SNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 349 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
++|++|++++|. ++..++ ..+..+++|++|++++|+
T Consensus 287 ~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred CCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc
Confidence 777777777763 444332 344567777777777765
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1e-22 Score=228.87 Aligned_cols=195 Identities=19% Similarity=0.251 Sum_probs=163.6
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS 88 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~ 88 (829)
++..++++..++++++|++++|.+..+++...+++|++|++++|. +..++. +.++++|++|++++|.++.+|.
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~----l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ----IADITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCc----cccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 455667777889999999999999998885589999999999998 566666 6999999999999999999876
Q ss_pred hcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEE
Q 003328 89 LGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEEL 168 (829)
Q Consensus 89 l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 168 (829)
+..+++|++|++++|.+..+..++++.+|++|++++ .+..++. ++++++|++|++++|. +..++. +.++++|++|
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 204 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESL 204 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEE
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEE
Confidence 899999999999999999887799999999999974 5555554 8999999999999987 677764 8999999999
Q ss_pred EccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEE
Q 003328 169 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKIC 225 (829)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 225 (829)
++++|.+. ....++.+++|+.|+++++.+..++....+++|+.|+++
T Consensus 205 ~l~~n~l~----------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 205 IATNNQIS----------DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp ECCSSCCC----------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred EecCCccc----------ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 99998765 122266788999999999988776544456666666554
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.1e-23 Score=230.96 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=61.4
Q ss_pred CCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCc-------------cEEEecCCCCCCC
Q 003328 20 KDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEEL-------------KVLSLIGIHFSSL 85 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~L-------------r~L~L~~~~i~~l 85 (829)
.++++++++++.+..+|..+ ++++|++|++++|. ..+.+|..+ +++++| ++|+++++.++.+
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~---~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE---WERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp -----------------------CCHHHHHHHHHH---HHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCc---ccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 45666666666666666544 56666666666665 334555543 555543 5555555555555
Q ss_pred chhhcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcc
Q 003328 86 PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRL 165 (829)
Q Consensus 86 p~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L 165 (829)
|.. .++|++|++++|.++.+.. .+.+|++|++++|.++.+|.. .++|++|++++|. +..+| . ++++++|
T Consensus 87 p~~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L 155 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFL 155 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTC
T ss_pred CCC---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCC
Confidence 542 2455555555555554421 124555555555555544421 1455555555554 44455 2 5555555
Q ss_pred cEEEccCCcc
Q 003328 166 EELYMGDSFS 175 (829)
Q Consensus 166 ~~L~l~~~~~ 175 (829)
++|++++|.+
T Consensus 156 ~~L~l~~N~l 165 (454)
T 1jl5_A 156 KIIDVDNNSL 165 (454)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 5555555543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=5.9e-22 Score=222.40 Aligned_cols=154 Identities=23% Similarity=0.349 Sum_probs=86.7
Q ss_pred CCCCcEEEcCCCCCCCCC-Ccc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCCCC
Q 003328 19 RKDPIAISLPQRDIQELP-ERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINL 95 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L 95 (829)
++++++|++++|.+..++ ..+ ++++|++|++++|. ....++...|.++++|++|++++|.++. .|..++++++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT---PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS---TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCc---ccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 356666666666666542 223 56666666666665 2334444445666666666666666655 35556666666
Q ss_pred cEEEccccCCCC--ccc--ccCCCCCcEEEccCCCCccc-hhh-hcCCCCCCEEeccCCCCCCccChhhhcCC--CcccE
Q 003328 96 QTLCLDWCQLED--VAA--IGQLKKLEILSFRGSDIKQL-PLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKF--SRLEE 167 (829)
Q Consensus 96 r~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L--~~L~~ 167 (829)
++|++++|.+.. +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++|. +..++...+..+ .+|+.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccc
Confidence 666666666654 222 66666666666666666654 333 5666666666666655 333322224433 45666
Q ss_pred EEccCCccc
Q 003328 168 LYMGDSFSQ 176 (829)
Q Consensus 168 L~l~~~~~~ 176 (829)
|+++++.+.
T Consensus 185 L~l~~n~l~ 193 (455)
T 3v47_A 185 LRLSSITLQ 193 (455)
T ss_dssp EECTTCBCT
T ss_pred cccccCccc
Confidence 666655443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.7e-22 Score=225.30 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=138.6
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 95 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L 95 (829)
+..++++++|++++|.+..+|....+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++.+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~----l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN----ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC----CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc----CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 34567899999999998888755588999999999988 55565 588899999999999988875 7889999
Q ss_pred cEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcc
Q 003328 96 QTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 96 r~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
++|++++|.++.+. ++++++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+
T Consensus 109 ~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence 99999999888775 888999999999999888875 7889999999999987677774 67889999999988876
Q ss_pred ccccccCCCccchhhhcCCCCCcEEEeecCCCCCc
Q 003328 176 QWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 210 (829)
. + +. +..+++|+.|+++++.+..+
T Consensus 183 ~-----~-----l~-l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 183 T-----E-----LD-VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp C-----C-----CC-CTTCTTCCEEECCSSCCSCC
T ss_pred c-----e-----ec-cccCCCCCEEECcCCcCCee
Confidence 5 1 11 66778888999888877654
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.7e-22 Score=226.91 Aligned_cols=321 Identities=15% Similarity=0.168 Sum_probs=212.4
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCC-CC-chhhcCCCCCcEEE
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFS-SL-PSSLGRLINLQTLC 99 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~l-p~~l~~l~~Lr~L~ 99 (829)
-+.++.+++++..+|. -.++|++|++++|. +..++...|.++++|++|++++|.+. .+ |..+..+++|++|+
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNS----IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSC----CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCc----cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 3578888889999998 33789999999999 56665555799999999999999986 34 56789999999999
Q ss_pred ccccCCCCc--ccccCCCCCcEEEccCCCCcc-chhh--hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCc
Q 003328 100 LDWCQLEDV--AAIGQLKKLEILSFRGSDIKQ-LPLE--IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 100 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 174 (829)
+++|.+..+ ..++++++|++|++++|.++. .|.. ++++++|++|++++|......|...++++++|++|++++|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 999999876 789999999999999999985 4555 89999999999999884333355447899999999999998
Q ss_pred cccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc----------ccccccEEEEEEcccc---ccCCCCCCCcc
Q 003328 175 SQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW----------VSVELQRYKICIGEAR---RIWPVNSETSR 241 (829)
Q Consensus 175 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~---~~w~~~~~~~~ 241 (829)
+. +.....+..+.. .+|+.|+++.+.+..++... ..++|+.|+++.+... +.+....
T Consensus 166 l~-----~~~~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---- 235 (455)
T 3v47_A 166 VK-----SICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---- 235 (455)
T ss_dssp BS-----CCCTTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH----
T ss_pred cc-----ccChhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc----
Confidence 75 222233333322 47888888888876655321 3467888877543221 0000000
Q ss_pred EEEeccCCccccchhhhhHHHhhhhheeEeeccccCcccccc----------ccCCCCCCCCCcEEEEeecCCceEEecc
Q 003328 242 LVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVH----------ELDDGEGFPRLKHLWVERCSEILHIVGS 311 (829)
Q Consensus 242 ~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~----------~l~~~~~~~~L~~L~l~~~~~l~~i~~~ 311 (829)
....+++.|++.++........ .+. .-..++|++|+++++.-....
T Consensus 236 --------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--- 291 (455)
T 3v47_A 236 --------------------IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFALL--- 291 (455)
T ss_dssp --------------------TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG-GGTTSCCCEEECCSSCCCEEC---
T ss_pred --------------------ccccceeeEeeccccccccccchhhhccCcccccc-cccccCceEEEecCccccccc---
Confidence 0013445555544422211000 000 012357777777776533321
Q ss_pred cCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecccCccee
Q 003328 312 VGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMM 391 (829)
Q Consensus 312 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 391 (829)
+ .....+++|+.|+++++.-- .+... ....+++|++|+++++ +++.+++ ..+..+++|++|+++++. +..+
T Consensus 292 ~--~~~~~l~~L~~L~Ls~n~l~-~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~ 362 (455)
T 3v47_A 292 K--SVFSHFTDLEQLTLAQNEIN-KIDDN---AFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNH-IRAL 362 (455)
T ss_dssp T--TTTTTCTTCCEEECTTSCCC-EECTT---TTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSC-CCEE
T ss_pred h--hhcccCCCCCEEECCCCccc-ccChh---HhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCc-cccc
Confidence 1 11344677777877766432 11111 1346778888888876 4555543 334667888888888763 3433
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.4e-22 Score=219.31 Aligned_cols=156 Identities=13% Similarity=0.221 Sum_probs=124.6
Q ss_pred ccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCC
Q 003328 38 RLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQL 114 (829)
Q Consensus 38 ~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L 114 (829)
...++++++|++.++. +..+|..+|.++++|++|++++|.++.++ ..+..+++|++|++++|.+..+ ..++++
T Consensus 41 ~~~l~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 41 DITLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp SGGGCCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCCceEEEecCCc----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 3467889999998887 77888888888999999999999888755 4788899999999999988876 568889
Q ss_pred CCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcC
Q 003328 115 KKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKG 193 (829)
Q Consensus 115 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 193 (829)
++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+. .. .+..
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~---~~~~ 184 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--------HV---DLSL 184 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS--------BC---CGGG
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC--------cc---cccc
Confidence 9999999999988888877 4888999999998887 56665544788899999999888764 11 2445
Q ss_pred CCCCcEEEeecCCCCC
Q 003328 194 LSKLTTLEIHVWDAQI 209 (829)
Q Consensus 194 l~~L~~L~l~~~~~~~ 209 (829)
+++|+.|+++++.+..
T Consensus 185 l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 185 IPSLFHANVSYNLLST 200 (390)
T ss_dssp CTTCSEEECCSSCCSE
T ss_pred ccccceeecccccccc
Confidence 6778888888776543
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.6e-21 Score=216.36 Aligned_cols=173 Identities=21% Similarity=0.246 Sum_probs=138.2
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 100 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L 100 (829)
-+.++.+++++..+|..+ .+++++|++++|. +..++...|.++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCc----cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 467888888888888755 3588999999998 6667655678999999999999998874 778899999999999
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccc
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQW 177 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 177 (829)
++|.++.+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~- 165 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT- 165 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-
Confidence 99998877 4678999999999999988865 5568899999999999877 55555444788899999999888664
Q ss_pred ccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 178 DKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 178 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
......+.++++|+.|++..+.+.
T Consensus 166 -------~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 166 -------SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred -------ccChhHhcccCCCcEEeCCCCcCc
Confidence 233445677788888888876654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2e-21 Score=213.23 Aligned_cols=281 Identities=16% Similarity=0.143 Sum_probs=209.8
Q ss_pred CCCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCC
Q 003328 18 IRKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLIN 94 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~ 94 (829)
.++++++++++++.+..+|... .+++|++|++++|. +..++...|.++++|++|++++|.++.+| ..++.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc----ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3579999999999999999854 79999999999998 67777666799999999999999999865 55899999
Q ss_pred CcEEEccccCCCCc-c-cccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEcc
Q 003328 95 LQTLCLDWCQLEDV-A-AIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 171 (829)
Q Consensus 95 Lr~L~L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 171 (829)
|++|++++|.++.+ . .++++++|++|++++|.++.++ ..++++++|++|++++|. +..++ ++.+++|++|+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecc
Confidence 99999999999988 3 4699999999999999999775 459999999999999987 66665 6789999999999
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCcc
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENV 251 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~ 251 (829)
++.+. .+....+|+.|+++++.+..++... ..+|+.|++
T Consensus 195 ~n~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l--------------------------- 233 (390)
T 3o6n_A 195 YNLLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKL--------------------------- 233 (390)
T ss_dssp SSCCS-------------EEECCSSCSEEECCSSCCCEEECCC-CSSCCEEEC---------------------------
T ss_pred ccccc-------------ccCCCCcceEEECCCCeeeeccccc-cccccEEEC---------------------------
Confidence 88654 2234458999999998877664432 344555544
Q ss_pred ccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceecccc
Q 003328 252 STLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFL 331 (829)
Q Consensus 252 ~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~ 331 (829)
.++. +++. .. ++.+++|++|+++++.- +.+.. .....+++|+.|+++++
T Consensus 234 ---------------------~~n~-l~~~-~~---l~~l~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 234 ---------------------QHNN-LTDT-AW---LLNYPGLVEVDLSYNEL-EKIMY----HPFVKMQRLERLYISNN 282 (390)
T ss_dssp ---------------------CSSC-CCCC-GG---GGGCTTCSEEECCSSCC-CEEES----GGGTTCSSCCEEECCSS
T ss_pred ---------------------CCCC-Cccc-HH---HcCCCCccEEECCCCcC-CCcCh----hHccccccCCEEECCCC
Confidence 3332 1111 12 23667777777777653 22211 11334677777777765
Q ss_pred ccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 332 SNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 332 ~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
. ++.+.. ....+++|++|+++++ +++.+|. ....+++|++|++++++
T Consensus 283 ~-l~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 283 R-LVALNL----YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp C-CCEEEC----SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC
T ss_pred c-CcccCc----ccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc
Confidence 3 222211 1346788999999888 5667664 25678999999998874
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1e-21 Score=218.81 Aligned_cols=267 Identities=17% Similarity=0.079 Sum_probs=155.3
Q ss_pred ccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCC-CCchhhcCCCCC-------------cEEEcccc
Q 003328 38 RLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFS-SLPSSLGRLINL-------------QTLCLDWC 103 (829)
Q Consensus 38 ~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lp~~l~~l~~L-------------r~L~L~~~ 103 (829)
.+..++||+|++++|. ++.+|.++ +++++|++|++++|.+. .+|.+++.+++| ++|++++|
T Consensus 7 ~~~~~~L~~L~l~~n~----l~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSN----LTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccccchhhhcccCc----hhhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3456788888888888 57888774 88888888888888776 588888877764 88888888
Q ss_pred CCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCC
Q 003328 104 QLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGG 183 (829)
Q Consensus 104 ~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 183 (829)
.++.+..+ ..+|++|++++|.++.+|.. +.+|++|++++|. +..++. + .++|++|++++|.+. +
T Consensus 82 ~l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~-----~- 145 (454)
T 1jl5_A 82 GLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLE-----K- 145 (454)
T ss_dssp CCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCS-----S-
T ss_pred ccccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCC-----C-
Confidence 87776332 36888888888888888753 4788888888876 555553 1 268888888888664 1
Q ss_pred CccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHh
Q 003328 184 SNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKML 263 (829)
Q Consensus 184 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 263 (829)
+..++++++|++|++++|.+..+|... .+|+.|+++.+.... ++. -..
T Consensus 146 ----lp~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~-----------------------l~~---~~~ 193 (454)
T 1jl5_A 146 ----LPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEE-----------------------LPE---LQN 193 (454)
T ss_dssp ----CCCCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSS-----------------------CCC---CTT
T ss_pred ----CcccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCc-----------------------Ccc---ccC
Confidence 224777888888888888887776543 578888775433211 000 011
Q ss_pred hhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCC
Q 003328 264 LKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLT 343 (829)
Q Consensus 264 l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~ 343 (829)
+++|+.|++.++.- +. ++ ...++|++|+++++. ++.++ . ...+++|+.|+++++. ++. ++
T Consensus 194 l~~L~~L~l~~N~l-~~----l~--~~~~~L~~L~l~~n~-l~~lp---~---~~~l~~L~~L~l~~N~-l~~-----l~ 253 (454)
T 1jl5_A 194 LPFLTAIYADNNSL-KK----LP--DLPLSLESIVAGNNI-LEELP---E---LQNLPFLTTIYADNNL-LKT-----LP 253 (454)
T ss_dssp CTTCCEEECCSSCC-SS----CC--CCCTTCCEEECCSSC-CSSCC---C---CTTCTTCCEEECCSSC-CSS-----CC
T ss_pred CCCCCEEECCCCcC-Cc----CC--CCcCcccEEECcCCc-CCccc---c---cCCCCCCCEEECCCCc-CCc-----cc
Confidence 46777888776632 21 21 123578888888774 33331 1 3356777777777653 221 22
Q ss_pred CCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEecc
Q 003328 344 EDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFC 385 (829)
Q Consensus 344 ~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 385 (829)
..+++|++|++.++ +++.+|.. .++|++|+++++
T Consensus 254 --~~~~~L~~L~l~~N-~l~~l~~~-----~~~L~~L~ls~N 287 (454)
T 1jl5_A 254 --DLPPSLEALNVRDN-YLTDLPEL-----PQSLTFLDVSEN 287 (454)
T ss_dssp --SCCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSS
T ss_pred --ccccccCEEECCCC-cccccCcc-----cCcCCEEECcCC
Confidence 23467777777766 35555432 366777777765
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.6e-21 Score=223.08 Aligned_cols=156 Identities=13% Similarity=0.221 Sum_probs=127.1
Q ss_pred ccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCC
Q 003328 38 RLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQL 114 (829)
Q Consensus 38 ~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L 114 (829)
.+.+++++.+++.++. +..+|..+|.++++|++|++++|.++.+| ..++.+++|++|++++|.+..+ ..++++
T Consensus 47 ~l~l~~l~~l~l~~~~----l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 47 DITLNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp SGGGCCCSEEEESSCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCCceEEEeeCCC----CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 3467889999999888 78888888889999999999999988755 4788999999999999998877 567899
Q ss_pred CCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcC
Q 003328 115 KKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKG 193 (829)
Q Consensus 115 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 193 (829)
++|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+. .. .++.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~---~~~~ 190 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--------HV---DLSL 190 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS--------BC---CGGG
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC--------Cc---Chhh
Confidence 9999999999999988877 4889999999999987 55665544888999999999988765 11 2445
Q ss_pred CCCCcEEEeecCCCCC
Q 003328 194 LSKLTTLEIHVWDAQI 209 (829)
Q Consensus 194 l~~L~~L~l~~~~~~~ 209 (829)
+++|+.|+++++.+..
T Consensus 191 l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 191 IPSLFHANVSYNLLST 206 (597)
T ss_dssp CTTCSEEECCSSCCSE
T ss_pred hhhhhhhhcccCcccc
Confidence 6788888888776553
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=211.58 Aligned_cols=301 Identities=18% Similarity=0.188 Sum_probs=217.5
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++..+|. ..++++++|++++|.+..+++ .+ ++++|++|++++|. +..++...|.++++|++|++++|.++.+|
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc----cCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 4444553 456799999999999998864 34 89999999999998 56665555799999999999999999988
Q ss_pred hh-hcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCC
Q 003328 87 SS-LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKF 162 (829)
Q Consensus 87 ~~-l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 162 (829)
.. +..+++|++|++++|.+..+ ..+.++.+|++|++++|.++.+ |..++++++|++|++++|. +..++...+.++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 175 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence 65 68999999999999999876 6899999999999999999866 5579999999999999987 788887768999
Q ss_pred CcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC-CCcCCc-cccccccEEEEEEccccccCCCCCCCc
Q 003328 163 SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA-QILPQD-WVSVELQRYKICIGEARRIWPVNSETS 240 (829)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~w~~~~~~~ 240 (829)
++|++|+++++.+. ......+..+++|+.|+++.+.. ..++.. ....+|+.|+++
T Consensus 176 ~~L~~L~l~~n~i~--------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~--------------- 232 (477)
T 2id5_A 176 HGLIVLRLRHLNIN--------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT--------------- 232 (477)
T ss_dssp TTCCEEEEESCCCC--------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE---------------
T ss_pred CCCcEEeCCCCcCc--------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc---------------
Confidence 99999999998765 22334567888999999998653 333322 123355555554
Q ss_pred cEEEeccCCccccchhhhhHHHhhhhheeEeeccccCccccc-cccCCCCCCCCCcEEEEeecCCceEEecccCcccccc
Q 003328 241 RLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVV-HELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTI 319 (829)
Q Consensus 241 ~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 319 (829)
++. ++.+. ..+ ..+++|++|+++++. +..+.. .....
T Consensus 233 ---------------------------------~n~-l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~----~~~~~ 270 (477)
T 2id5_A 233 ---------------------------------HCN-LTAVPYLAV---RHLVYLRFLNLSYNP-ISTIEG----SMLHE 270 (477)
T ss_dssp ---------------------------------SSC-CCSCCHHHH---TTCTTCCEEECCSSC-CCEECT----TSCTT
T ss_pred ---------------------------------CCc-ccccCHHHh---cCccccCeeECCCCc-CCccCh----hhccc
Confidence 321 11111 112 256677777777665 333211 11234
Q ss_pred cccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 320 FPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 320 ~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
+++|+.|++.++.- ..+... ....+++|+.|+++++ +++.++. ..+..+++|++|++++++
T Consensus 271 l~~L~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 271 LLRLQEIQLVGGQL-AVVEPY---AFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSSCC-SEECTT---TBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCCcc-ceECHH---HhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 66777777766532 222111 1346788888888887 5666654 334567888888888764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-20 Score=218.46 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=209.9
Q ss_pred CCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCC
Q 003328 19 RKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINL 95 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~L 95 (829)
+.+++.++++++.+..+|+.. .+++|++|++++|. +..++...|..+++|++|++++|.++.+|. .++.+++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC----CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 478999999999999999864 79999999999998 667776567999999999999999998765 46999999
Q ss_pred cEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccC
Q 003328 96 QTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 172 (829)
Q Consensus 96 r~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~ 172 (829)
++|++++|.+..+ ..++++++|++|++++|.++.++. .++++++|++|++++|. +..++ ++.+++|++|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhccc
Confidence 9999999999988 447999999999999999997754 69999999999999987 67776 57899999999998
Q ss_pred CccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccc
Q 003328 173 SFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVS 252 (829)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~ 252 (829)
|.+. .+....+|+.|+++++.+..++... ..+|+.|++
T Consensus 202 n~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L---------------------------- 239 (597)
T 3oja_B 202 NLLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKL---------------------------- 239 (597)
T ss_dssp SCCS-------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEEC----------------------------
T ss_pred Cccc-------------cccCCchhheeeccCCccccccccc-CCCCCEEEC----------------------------
Confidence 8654 2334568999999998877655432 234555444
Q ss_pred cchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccc
Q 003328 253 TLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLS 332 (829)
Q Consensus 253 ~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~ 332 (829)
.++. ++. ... ++.+++|++|+++++.-....+ .....+++|+.|+++++.
T Consensus 240 --------------------~~n~-l~~-~~~---l~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 240 --------------------QHNN-LTD-TAW---LLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNNR 289 (597)
T ss_dssp --------------------CSSC-CCC-CGG---GGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTTSC
T ss_pred --------------------CCCC-CCC-Chh---hccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCCCC
Confidence 3332 111 122 2366777777777765322211 113446777777777653
Q ss_pred cchhhhcCCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 333 NLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 333 ~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
+..+.. ..+.+++|+.|++++| .++.+|. .+..+++|+.|+++++.
T Consensus 290 -l~~l~~----~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 290 -LVALNL----YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS 335 (597)
T ss_dssp -CCEEEC----SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC
T ss_pred -CCCCCc----ccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC
Confidence 222211 1346889999999887 4566663 35678999999999875
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=7.5e-20 Score=203.83 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=161.8
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL 89 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l 89 (829)
+...+++..++++++|++++|.+..++ ...+++|++|++++|. +..++ |+++++|++|++++|.++.+| +
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~----l~~~~---~~~l~~L~~L~L~~N~l~~l~--~ 123 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK----LTNLD---VTPLTKLTYLNCDTNKLTKLD--V 123 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC----CSCCC---CTTCTTCCEEECCSSCCSCCC--C
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC----Cceee---cCCCCcCCEEECCCCcCCeec--C
Confidence 444556778899999999999999886 4489999999999999 55665 589999999999999999986 8
Q ss_pred cCCCCCcEEEccccCCCCcccccCCCCCcEEEccCC-CCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEE
Q 003328 90 GRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGS-DIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEEL 168 (829)
Q Consensus 90 ~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 168 (829)
+.+++|++|++++|.++.+ .++++++|++|++++| .+..+ .++.+++|++|++++|. +..+| ++.+++|++|
T Consensus 124 ~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L 196 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRL 196 (457)
T ss_dssp TTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEE
Confidence 9999999999999999887 4889999999999999 56666 48899999999999987 77777 6899999999
Q ss_pred EccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEcc
Q 003328 169 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGE 228 (829)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 228 (829)
++++|.+. + + .++.+++|+.|++++|.+..+| ...+++|+.|+++.+.
T Consensus 197 ~l~~N~l~-----~-----~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 197 NCDTNNIT-----K-----L-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp ECCSSCCS-----C-----C-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred ECcCCcCC-----e-----e-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc
Confidence 99999775 1 1 3778899999999999998877 4477888888876443
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=6.3e-22 Score=230.13 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=19.6
Q ss_pred CCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCc
Q 003328 570 NNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCD 607 (829)
Q Consensus 570 ~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~ 607 (829)
++|+.|++++|. +++.....++..+++|++|+|++|+
T Consensus 463 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 463 PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp TTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 556666666554 3321122233455666666666665
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2e-20 Score=198.22 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=190.7
Q ss_pred ccCC--ccccCCC-----CCCcEEEcCCCCCC---CCCCcc-CCCCCcEEEeec-CCCcccccccchhhhcCCCCccEEE
Q 003328 9 DVEK--KMEETIR-----KDPIAISLPQRDIQ---ELPERL-QCPNLQLFLLIT-KGIAPVSMQISDLFFEGTEELKVLS 76 (829)
Q Consensus 9 ~~~~--~~~~~~~-----~~l~~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~lp~~~~~~l~~Lr~L~ 76 (829)
+.+. |.++..- .++++|+++++.+. .+|..+ ++++|++|++++ |. ....+|.. |.++++|++|+
T Consensus 32 ~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~---l~~~~p~~-l~~l~~L~~L~ 107 (313)
T 1ogq_A 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---LVGPIPPA-IAKLTQLHYLY 107 (313)
T ss_dssp CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT---EESCCCGG-GGGCTTCSEEE
T ss_pred CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc---ccccCChh-HhcCCCCCEEE
Confidence 4455 8887432 68999999999988 477666 899999999995 76 35567776 48999999999
Q ss_pred ecCCCCC-CCchhhcCCCCCcEEEccccCCC-Cc-ccccCCCCCcEEEccCCCCc-cchhhhcCCC-CCCEEeccCCCCC
Q 003328 77 LIGIHFS-SLPSSLGRLINLQTLCLDWCQLE-DV-AAIGQLKKLEILSFRGSDIK-QLPLEIGQLT-RLQLLDLSNCSSL 151 (829)
Q Consensus 77 L~~~~i~-~lp~~l~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l 151 (829)
+++|.++ .+|..+..+++|++|++++|.+. .+ ..++++++|++|++++|.++ .+|..++++. +|++|++++|...
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 9999998 68889999999999999999988 45 78999999999999999998 8899999998 9999999998744
Q ss_pred CccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc-cccccccEEEEEEcccc
Q 003328 152 VVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD-WVSVELQRYKICIGEAR 230 (829)
Q Consensus 152 ~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 230 (829)
+.+|.. ++.+. |++|++++|.+. ......+..+++|+.|++++|.+...+.. ..+
T Consensus 188 ~~~~~~-~~~l~-L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-------------- 243 (313)
T 1ogq_A 188 GKIPPT-FANLN-LAFVDLSRNMLE--------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-------------- 243 (313)
T ss_dssp EECCGG-GGGCC-CSEEECCSSEEE--------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC--------------
T ss_pred ccCChH-HhCCc-ccEEECcCCccc--------CcCCHHHhcCCCCCEEECCCCceeeecCccccc--------------
Confidence 467766 78887 999999998765 23445667888999999988776432221 122
Q ss_pred ccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEec
Q 003328 231 RIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVG 310 (829)
Q Consensus 231 ~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~ 310 (829)
++|++|+++++.-...+...+. .+++|++|+++++.-...+
T Consensus 244 ----------------------------------~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~i-- 284 (313)
T 1ogq_A 244 ----------------------------------KNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEI-- 284 (313)
T ss_dssp ----------------------------------TTCCEEECCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEEC--
T ss_pred ----------------------------------CCCCEEECcCCcccCcCChHHh---cCcCCCEEECcCCcccccC--
Confidence 4455555555533223333443 7788888888877533333
Q ss_pred ccCcccccccccccceeccccccch
Q 003328 311 SVGRVRCTIFPLLESLSLWFLSNLE 335 (829)
Q Consensus 311 ~~~~~~~~~~~~L~~L~L~~~~~l~ 335 (829)
+. ...+++|+.+++.+.+.+.
T Consensus 285 -p~---~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 285 -PQ---GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -CC---STTGGGSCGGGTCSSSEEE
T ss_pred -CC---CccccccChHHhcCCCCcc
Confidence 11 2457777878777776543
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.1e-21 Score=228.02 Aligned_cols=406 Identities=15% Similarity=0.083 Sum_probs=228.2
Q ss_pred CCCCCcEEEeecCCCccccccc-----------chhhhcCCCCccEEEecCCCCCC-CchhhcC-CC-CCcEEEccccC-
Q 003328 40 QCPNLQLFLLITKGIAPVSMQI-----------SDLFFEGTEELKVLSLIGIHFSS-LPSSLGR-LI-NLQTLCLDWCQ- 104 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~l-----------p~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~-l~-~Lr~L~L~~~~- 104 (829)
.+++|+.|++.++........+ ...++..+++|++|+++++.++. .+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 6778888888776521001111 12233478889999998887764 3344544 33 48999998885
Q ss_pred CC--Cc-ccccCCCCCcEEEccCCCCcc-----chhhhcCCCCCCEEeccCCCCCC-----ccChhhhcCCCcccEEEcc
Q 003328 105 LE--DV-AAIGQLKKLEILSFRGSDIKQ-----LPLEIGQLTRLQLLDLSNCSSLV-----VIAPNVISKFSRLEELYMG 171 (829)
Q Consensus 105 l~--~l-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lp~~~l~~L~~L~~L~l~ 171 (829)
+. .+ ..+.++++|++|++++|.+.. ++....++++|++|+++++. +. .++. .+.++++|++|+++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~-~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLET-IARNCRSLVSVKVG 228 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHH-HHhhCCCCcEEecc
Confidence 33 23 344578889999998886542 44455678888999888876 33 2332 25678889999988
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEeecCCCCC----cCC-ccccccccEEEEEEccccccCCCCCCCccEEEec
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI----LPQ-DWVSVELQRYKICIGEARRIWPVNSETSRLVWLH 246 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~----~~~-~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~ 246 (829)
+|.+. .....+.++++|+.|++....... ... ...+.+|+.+.+
T Consensus 229 ~~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l---------------------- 277 (592)
T 3ogk_B 229 DFEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL---------------------- 277 (592)
T ss_dssp SCBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE----------------------
T ss_pred CccHH---------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc----------------------
Confidence 87654 234556677888888887532210 001 113334444433
Q ss_pred cCCccccchhhhhHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccce
Q 003328 247 GLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESL 326 (829)
Q Consensus 247 ~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L 326 (829)
.++. ...+...+ ..+++|++|++++|. +.. .........+++|+.|
T Consensus 278 --------------------------~~~~-~~~l~~~~---~~~~~L~~L~Ls~~~-l~~---~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 278 --------------------------SYMG-PNEMPILF---PFAAQIRKLDLLYAL-LET---EDHCTLIQKCPNLEVL 323 (592)
T ss_dssp --------------------------TTCC-TTTGGGGG---GGGGGCCEEEETTCC-CCH---HHHHHHHTTCTTCCEE
T ss_pred --------------------------cccc-hhHHHHHH---hhcCCCcEEecCCCc-CCH---HHHHHHHHhCcCCCEE
Confidence 2211 01111111 144556666666555 221 0000012345666666
Q ss_pred eccccccchhhhcCCCCCCCCCCCccEEEEec----------CCCCccccchHHHHhhcccceEEEecccCcceecccCC
Q 003328 327 SLWFLSNLETICDSQLTEDQSFSNLRIIEVKS----------CDKLKHLFSFSMAKNLLRLQKVEVFFCDDLEMMVGPDR 396 (829)
Q Consensus 327 ~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~----------C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 396 (829)
++.++..-..+.. + ...+++|++|++.+ |..+++.........+++|++|++ .|..+.......
T Consensus 324 ~L~~~~~~~~l~~--~--~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~- 397 (592)
T 3ogk_B 324 ETRNVIGDRGLEV--L--AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLES- 397 (592)
T ss_dssp EEEGGGHHHHHHH--H--HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHH-
T ss_pred eccCccCHHHHHH--H--HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHH-
Confidence 6652221111100 0 13567788888885 777776544455667888888888 455554321110
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCceeeeeeccCcchhhHHhhhcccccccccccCccceEeecc---CCCcceeecC
Q 003328 397 EKPTTSLGFNEITADDDAAPKVGIPGILVNLNVSRCDKIEEIIRHVGEEVKENRIAFGKLKVLILNY---LPTLTSFCLE 473 (829)
Q Consensus 397 ~~~~~~l~~~~i~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~~~~~ 473 (829)
-...+++|+.|++.+ |..+++.+.+
T Consensus 398 ----------------------------------------------------l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 398 ----------------------------------------------------IGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp ----------------------------------------------------HHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred ----------------------------------------------------HHhhCCCCcEEEEeecCCCccccCchHH
Confidence 012366777777763 4566554221
Q ss_pred ----CccccCCCccEEeeccCCC-cceecccccCCCCCccceeecccccccccccCCCccchhhhhhhhccccCCcceEE
Q 003328 474 ----NYTLEFPSLERVSLTHCPN-MKTFSHRILSIPKPCKVQVTEKEEGELHHWEGNNLNSTIQKCYEEMIGFRDIEHLQ 548 (829)
Q Consensus 474 ----~~~~~~~~L~~L~i~~C~~-l~~~~~~~~~~~l~~~L~~Li~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 548 (829)
.....+++|++|++++|.. +++.. +.. ....+++|++|+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-----------~~~-------------------------~~~~~~~L~~L~ 469 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLG-----------LSY-------------------------IGQYSPNVRWML 469 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHH-----------HHH-------------------------HHHSCTTCCEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHH-----------HHH-------------------------HHHhCccceEee
Confidence 1122578888888887764 22210 000 001267788888
Q ss_pred eccCCCceeeccCCCCCCCcCCCCcEEEEecCCCCccccchhhHHhccCCcEEEEecCcchhh
Q 003328 549 LSHFPRLREIWHGQALPVSFFNNLSDLVVDDCTNMSSAIPANLLRCFNNLVLLEVRNCDSLEE 611 (829)
Q Consensus 549 l~~c~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~~~p~~~~~~l~sL~~L~i~~C~~L~~ 611 (829)
+++|. +++.... .....+++|+.|+|++|+ +++.......+.+++|++|++++|. ++.
T Consensus 470 L~~n~-l~~~~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 470 LGYVG-ESDEGLM--EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ECSCC-SSHHHHH--HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ccCCC-CCHHHHH--HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 88764 3321100 001234889999999998 6654344555678999999999997 543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.8e-20 Score=197.19 Aligned_cols=174 Identities=22% Similarity=0.373 Sum_probs=149.7
Q ss_pred CCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 19 RKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
..+++.|+++++.+..+|..+ ++++|++|++++|. +..+|..+ +++++|++|++++|.++.+|..++.+++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~----l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG----LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC----CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC----ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 478999999999999999866 89999999999999 55888764 8999999999999999999999999999999
Q ss_pred EEccccCC-CCc-ccc---------cCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCccc
Q 003328 98 LCLDWCQL-EDV-AAI---------GQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLE 166 (829)
Q Consensus 98 L~L~~~~l-~~l-~~i---------~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 166 (829)
|++++|++ ..+ ..+ +++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCC
Confidence 99999864 444 444 45999999999999999999999999999999999987 7778887 89999999
Q ss_pred EEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 167 ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
+|++++|... ......++.+++|+.|+++.|..
T Consensus 233 ~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 233 ELDLRGCTAL--------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp EEECTTCTTC--------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred EEECcCCcch--------hhhHHHhcCCCCCCEEECCCCCc
Confidence 9999998765 22334567788899998887654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.7e-19 Score=192.97 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=103.8
Q ss_pred CCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcE
Q 003328 43 NLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEI 119 (829)
Q Consensus 43 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 119 (829)
++++++++++. ...+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++.+ ..++++++|++
T Consensus 34 ~l~~l~~~~~~----l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLG----LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSC----CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCC----ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 57777777776 56666543 35777777777777765 34677777777777777777765 56777778888
Q ss_pred EEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcE
Q 003328 120 LSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 199 (829)
Q Consensus 120 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 199 (829)
|++++|.++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+. ........++.+ +|+.
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLE------NSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCB------GGGSCTTSSCSC-CCSC
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccc------cCCCCcccccCC-ccCE
Confidence 8888777777776655 678888887766 56666655677788888887777653 011223334444 6777
Q ss_pred EEeecCCCCCcCC
Q 003328 200 LEIHVWDAQILPQ 212 (829)
Q Consensus 200 L~l~~~~~~~~~~ 212 (829)
|+++++.+..+|.
T Consensus 177 L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 177 LRISEAKLTGIPK 189 (332)
T ss_dssp CBCCSSBCSSCCS
T ss_pred EECcCCCCCccCc
Confidence 7777776665544
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=2.2e-21 Score=225.64 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=92.1
Q ss_pred CCCCCcEEEeecCCCccccccc--------------chhhhcCCCCccEEEecCCCCCC-Cchhhc-CCCCCcEEEcccc
Q 003328 40 QCPNLQLFLLITKGIAPVSMQI--------------SDLFFEGTEELKVLSLIGIHFSS-LPSSLG-RLINLQTLCLDWC 103 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~l--------------p~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~-~l~~Lr~L~L~~~ 103 (829)
.+++|++|.+.++. ...++ ...++..+++|++|+++++.++. .+..+. .+++|++|++++|
T Consensus 64 ~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 64 RFPKVRSVELKGKP---HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HCTTCCEEEEECSC---GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCceEEeccCCC---chhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 57788888888775 22211 12234567788888888877664 334443 5778888888887
Q ss_pred -CCCC--c-ccccCCCCCcEEEccCCCCcc-----chhhhcCCCCCCEEeccCCCCCCccChh----hhcCCCcccEEEc
Q 003328 104 -QLED--V-AAIGQLKKLEILSFRGSDIKQ-----LPLEIGQLTRLQLLDLSNCSSLVVIAPN----VISKFSRLEELYM 170 (829)
Q Consensus 104 -~l~~--l-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~----~l~~L~~L~~L~l 170 (829)
.+.. + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..++.. .+.++++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEec
Confidence 4553 4 444577888888888876542 33333466788888887765 222221 1344677888887
Q ss_pred cCCccccccccCCCccchhhhcCCCCCcEEEeec
Q 003328 171 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHV 204 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~ 204 (829)
++|... ......+..+++|+.|++..
T Consensus 219 ~~~~~~--------~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 219 NRAVPL--------EKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CTTSCH--------HHHHHHHHHCTTCSEEECSB
T ss_pred CCCCcH--------HHHHHHHhcCCcceEccccc
Confidence 776322 11233444566677766653
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.9e-19 Score=191.80 Aligned_cols=133 Identities=23% Similarity=0.335 Sum_probs=91.6
Q ss_pred CCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEecc
Q 003328 68 GTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLS 146 (829)
Q Consensus 68 ~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 146 (829)
...++++|+++++.++.+|..+.++++|++|++++|.+..+ ..++++.+|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34677777777777777777777777777777777777766 66777777778887777777777777777788888877
Q ss_pred CCCCCCccChhhhcC---------CCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCc
Q 003328 147 NCSSLVVIAPNVISK---------FSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 147 ~~~~l~~lp~~~l~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 210 (829)
+|...+.+|.. ++. +++|++|++++|.+. .....++++++|+.|++++|.+..+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCCCcC
Confidence 77767777765 433 666666666666443 2223355556666666666655443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2.3e-18 Score=184.14 Aligned_cols=122 Identities=21% Similarity=0.348 Sum_probs=59.0
Q ss_pred CCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~ 99 (829)
+++.++++++.+..+|..+ .+++++|++++|. +..++...|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4555555555555555432 2345555555555 3444443345555555555555555543 44455555555555
Q ss_pred ccccCCCCc-ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCC
Q 003328 100 LDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 100 L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 149 (829)
+++|.++.+ ..+. ++|++|++++|.++.++. .++++++|++|++++|.
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 555554444 2222 445555555554444432 24445555555554443
No 49
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=5.9e-21 Score=222.04 Aligned_cols=177 Identities=20% Similarity=0.181 Sum_probs=125.3
Q ss_pred CCCCCcEEEcCCCCC-CCC---CC------------cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCC
Q 003328 18 IRKDPIAISLPQRDI-QEL---PE------------RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGI 80 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~-~~l---~~------------~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~ 80 (829)
..+++++|++.++.. ..+ |. .. .+++|++|++++|. .....+..+...+++|++|++++|
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---VTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB---CCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE---EcHHHHHHHHHhCCCCcEEeCCCc
Confidence 457899999998742 222 11 11 58899999999998 344444554347899999999999
Q ss_pred -CCCC--CchhhcCCCCCcEEEccccCCCC-----c-ccccCCCCCcEEEccCCC--Cc--cchhhhcCCCCCCEEeccC
Q 003328 81 -HFSS--LPSSLGRLINLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRGSD--IK--QLPLEIGQLTRLQLLDLSN 147 (829)
Q Consensus 81 -~i~~--lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~ 147 (829)
.++. ++..+..+++|++|++++|.+.. + .....+++|++|++++|. +. .++.-+.++++|++|++.+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 5554 66666789999999999998653 3 334477899999999986 32 3444456789999999999
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEE
Q 003328 148 CSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTL 200 (829)
Q Consensus 148 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 200 (829)
|..+..++.. +.++++|++|+++.+...... .........+.++++|+.+
T Consensus 221 ~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 221 AVPLEKLATL-LQRAPQLEELGTGGYTAEVRP--DVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp TSCHHHHHHH-HHHCTTCSEEECSBCCCCCCH--HHHHHHHHHHHTCTTCCEE
T ss_pred CCcHHHHHHH-HhcCCcceEcccccccCccch--hhHHHHHHHHhcCCCcccc
Confidence 9767777665 889999999998765321000 0011223356677778777
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=8.2e-19 Score=183.39 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=160.8
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCC-CCCC-
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIH-FSSL- 85 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-i~~l- 85 (829)
+..+| ...++++++|++++|.+..++.. + .+++|++|++++|. +..++...|.++++|++|++++|. ++.+
T Consensus 23 l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 23 LQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCC-TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred cccCC-cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 44444 24567899999999999887753 3 78999999999988 556644456889999999999997 7776
Q ss_pred chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCC
Q 003328 86 PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKF 162 (829)
Q Consensus 86 p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 162 (829)
|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCc
Confidence 67788999999999999988876 6688899999999999998888755 7889999999999986 777776557889
Q ss_pred CcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc--cccccccEEEEE
Q 003328 163 SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD--WVSVELQRYKIC 225 (829)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~ 225 (829)
++|++|++++|.+. ......+..+++|+.|++++|.+..++.. ..+++|+.+++.
T Consensus 177 ~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 177 HSLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cccCEEECCCCccc--------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 99999999988765 23345667788999999999988877654 256777777765
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=5.5e-18 Score=181.19 Aligned_cols=177 Identities=19% Similarity=0.284 Sum_probs=149.7
Q ss_pred CCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCC
Q 003328 18 IRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 95 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L 95 (829)
.++++++|++++|.+..++. .+ ++++|++|++++|. +..++...|.++++|++|++++|.++.+|..+. ++|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 35789999999999998876 33 89999999999998 566644446999999999999999999988765 799
Q ss_pred cEEEccccCCCCc--ccccCCCCCcEEEccCCCCc---cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEc
Q 003328 96 QTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIK---QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 96 r~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 170 (829)
++|++++|.+..+ ..+.++.+|++|++++|.++ ..|..++++++|++|++++|. +..+|.. + .++|++|++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l 199 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L--PPSLTELHL 199 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--CTTCSEEEC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--cccCCEEEC
Confidence 9999999999977 67999999999999999886 446779999999999999987 7788865 3 389999999
Q ss_pred cCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC
Q 003328 171 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ 212 (829)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 212 (829)
++|.+. ......+..+++|+.|++++|.+..++.
T Consensus 200 ~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 200 DGNKIT--------KVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp TTSCCC--------EECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCC--------ccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 999765 2334667788999999999988765543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=189.69 Aligned_cols=195 Identities=20% Similarity=0.232 Sum_probs=156.7
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTL 98 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L 98 (829)
+.....+.+++.++++|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..+..+++|++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444568889999999987553 589999999998 6777776679999999999999999875 4568899999999
Q ss_pred EccccCCCCc--ccccCCCCCcEEEccCCCCccchh--hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCc
Q 003328 99 CLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL--EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 99 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 174 (829)
++++|.++.+ ..++++++|++|++++|.++.+|. .++++++|++|++++|..+..++...++++++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 9999999887 448999999999999999998887 688999999999999866777765558889999999999887
Q ss_pred cccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEEEc
Q 003328 175 SQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKICIG 227 (829)
Q Consensus 175 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 227 (829)
+. ......++.+++|++|+++++.+..++... .+++|+.|+++.+
T Consensus 186 l~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 186 LQ--------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CC--------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred cC--------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 65 233456777889999999988876665543 3566777766533
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2.3e-18 Score=184.19 Aligned_cols=184 Identities=16% Similarity=0.260 Sum_probs=146.7
Q ss_pred CCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~ 99 (829)
+++.++++++.+..+|..+ .++|++|++++|. +..++...|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND----ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCc----CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 6999999999999998765 4689999999998 6677665579999999999999999985 78899999999999
Q ss_pred ccccCCCCc-ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCC---ccChhhhcCCCcccEEEccCCc
Q 003328 100 LDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLV---VIAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 100 L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~---~lp~~~l~~L~~L~~L~l~~~~ 174 (829)
+++|.++.+ ..+. .+|++|++++|.++.+|.. ++++++|++|++++|. +. ..+.. ++.+ +|++|++++|.
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGA-FDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTS-SCSC-CCSCCBCCSSB
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCccc-ccCC-ccCEEECcCCC
Confidence 999999888 5554 8999999999999988764 8999999999999987 43 33333 6677 99999999987
Q ss_pred cccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc--cccccccEEEEE
Q 003328 175 SQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD--WVSVELQRYKIC 225 (829)
Q Consensus 175 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~ 225 (829)
+. . .+ ..+ .++|+.|++++|.+..++.. ..+++|+.|+++
T Consensus 184 l~-----~-l~---~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 184 LT-----G-IP---KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CS-----S-CC---SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CC-----c-cC---ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 65 1 11 111 15889999999988776632 245556655543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.1e-18 Score=182.34 Aligned_cols=175 Identities=22% Similarity=0.208 Sum_probs=112.2
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC---chhhcCCCCCcEEE
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL---PSSLGRLINLQTLC 99 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l---p~~l~~l~~Lr~L~ 99 (829)
+.++.++++++.+|..+. ++|++|++++|. +..+|..+|.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCc----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 356666666776665432 467777777776 5566666667777777777777776643 55666677777777
Q ss_pred ccccCCCCc-ccccCCCCCcEEEccCCCCccchh--hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 100 LDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPL--EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 100 L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+++|.+..+ ..+.++++|++|++++|.++.++. .+.++++|++|++++|. +...+...++.+++|++|++++|.+.
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccc
Confidence 777776666 557777777777777777666653 56677777777777765 33333333666777777777776553
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCc
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 210 (829)
+ ......+..+++|+.|++++|.+..+
T Consensus 164 -----~--~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 164 -----E--NFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp -----G--GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred -----c--ccchhHHhhCcCCCEEECCCCCcCCc
Confidence 0 01223455666777777777666544
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.3e-18 Score=174.51 Aligned_cols=206 Identities=19% Similarity=0.283 Sum_probs=172.6
Q ss_pred cccCCccccC--CCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC
Q 003328 8 ADVEKKMEET--IRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL 85 (829)
Q Consensus 8 ~~~~~~~~~~--~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l 85 (829)
++.+.|.+.. ...+.++++++++.+..+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNK----LSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSC----CSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCC----CCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 4677888764 34578999999999999987553 689999999998 6778776679999999999999999998
Q ss_pred chhh-cCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcC
Q 003328 86 PSSL-GRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISK 161 (829)
Q Consensus 86 p~~l-~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~ 161 (829)
|..+ ..+++|++|++++|.+..+ ..+.++.+|++|++++|.++.+|.. ++++++|++|++++|. +..+|...++.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 155 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDK 155 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccC
Confidence 8764 7899999999999999987 5789999999999999999988654 7899999999999987 77888766789
Q ss_pred CCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEEEc
Q 003328 162 FSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKICIG 227 (829)
Q Consensus 162 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 227 (829)
+++|++|++++|.+. ......+..+++|+.|+++.|.+..++... .+++|+.+++.++
T Consensus 156 l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 156 LTSLKELRLYNNQLK--------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccceeEecCCcCc--------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 999999999998765 122334677889999999999998887653 5788898887543
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.5e-18 Score=188.17 Aligned_cols=189 Identities=22% Similarity=0.282 Sum_probs=152.8
Q ss_pred CCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~ 99 (829)
..+.++.++..+..+|..+. +++++|++++|. +..++...|.++++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 46788888888998887653 689999999998 66777666799999999999999988754 6788999999999
Q ss_pred ccccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 100 LDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 100 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+++|.++.+ ..+..+.+|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999999887 468999999999999999988765 58899999999999988888888766888999999999998764
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc-c-ccccccEEEE
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD-W-VSVELQRYKI 224 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l 224 (829)
.+..+..+++|+.|++++|.+..++.. + .+++|+.|++
T Consensus 199 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 199 ----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp ----------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 223467888999999999887765432 1 4445555543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=7.5e-18 Score=188.37 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=152.9
Q ss_pred CCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~ 99 (829)
..+.++.++.++..+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.++ ..+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 45788888888888887553 689999999998 66676556799999999999999998754 6788999999999
Q ss_pred ccccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 100 LDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 100 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
|++|.++.+ ..+.++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+..+++|++|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999999877 568899999999999999998876 58899999999999988888888776889999999999998765
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc-c-ccccccEEEE
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD-W-VSVELQRYKI 224 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l 224 (829)
.+..+..+++|+.|++++|.+..++.. + .+++|+.|++
T Consensus 210 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp ----------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred ----------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 223567788999999999888765432 1 3444444443
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.3e-17 Score=187.91 Aligned_cols=256 Identities=20% Similarity=0.151 Sum_probs=186.4
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 99 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~ 99 (829)
.+++.|+++++.+..+|..+. ++|++|++++|. +..+|. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~----l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN----LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC----CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCC----CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 368999999999999998665 799999999998 667875 57899999999999999987 779999999
Q ss_pred ccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccc
Q 003328 100 LDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 100 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 179 (829)
+++|.++.+.. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+.
T Consensus 108 Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 108 IFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT--- 174 (622)
T ss_dssp ECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS---
T ss_pred CcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC---
Confidence 99999998844 678999999999999999874 5899999999986 777774 3578999999998775
Q ss_pred ccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhh
Q 003328 180 VEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYG 259 (829)
Q Consensus 180 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~ 259 (829)
. +. ..+++|+.|+++.|.+..++.. ..+|+.|++.
T Consensus 175 ---~----l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~---------------------------------- 209 (622)
T 3g06_A 175 ---S----LP--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAY---------------------------------- 209 (622)
T ss_dssp ---C----CC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECC----------------------------------
T ss_pred ---C----Cc--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECc----------------------------------
Confidence 1 11 4567899999999988877653 3455555443
Q ss_pred HHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhc
Q 003328 260 MKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICD 339 (829)
Q Consensus 260 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 339 (829)
++. ++ .++ ..+++|+.|+++++. ++.++ ..+++|+.|+++++ .++.
T Consensus 210 --------------~N~-l~----~l~--~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~--- 255 (622)
T 3g06_A 210 --------------NNR-LT----SLP--ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTS--- 255 (622)
T ss_dssp --------------SSC-CS----SCC--CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSC---
T ss_pred --------------CCc-cc----ccC--CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCc---
Confidence 221 11 111 123566666666653 33221 33566777777665 2222
Q ss_pred CCCCCCCCCCCccEEEEecCCCCccccchHHHHhhcccceEEEeccc
Q 003328 340 SQLTEDQSFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVFFCD 386 (829)
Q Consensus 340 ~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 386 (829)
+|. .+++|+.|++++| +++.+|. .+.++++|+.|++++++
T Consensus 256 --lp~--~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 256 --LPM--LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCC--CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred --CCc--ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 331 5667777777776 5666653 35667777777777764
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=180.60 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=154.2
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS 87 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~ 87 (829)
+..+|. ...+++++|++++|.+..++. .+ ++++|++|++++|. +..++...|.++++|++|++++|.++.+|.
T Consensus 43 l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 43 LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp CSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred cccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc----cCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 344442 344699999999999998886 33 89999999999998 666766557999999999999999999887
Q ss_pred h-hcCCCCCcEEEccccCCCCc-c--cccCCCCCcEEEccCC-CCccc-hhhhcCCCCCCEEeccCCCCCCcc-Chhhhc
Q 003328 88 S-LGRLINLQTLCLDWCQLEDV-A--AIGQLKKLEILSFRGS-DIKQL-PLEIGQLTRLQLLDLSNCSSLVVI-APNVIS 160 (829)
Q Consensus 88 ~-l~~l~~Lr~L~L~~~~l~~l-~--~i~~L~~L~~L~l~~~-~l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~~l~ 160 (829)
. +..+++|++|++++|.++.+ . .++++++|++|++++| .+..+ |..++++++|++|++++|. +..+ |.. ++
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l~ 195 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-LK 195 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-Hh
Confidence 6 89999999999999999988 4 6899999999999999 57776 4679999999999999988 5555 554 89
Q ss_pred CCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 161 KFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 161 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
++++|++|++++|.+. ......+..+++|+.|+++++.+..++
T Consensus 196 ~l~~L~~L~l~~n~l~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 196 SIQNVSHLILHMKQHI--------LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TCSEEEEEEEECSCST--------THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCCeecCCCCccc--------cchhhhhhhcccccEEECCCCcccccc
Confidence 9999999999998764 111223445789999999999887654
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.5e-18 Score=183.66 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=129.8
Q ss_pred CCCcEEEeecCCCccccc--ccchhhhcCCCCccEEEecC-CCCC-CCchhhcCCCCCcEEEccccCCC-Cc-ccccCCC
Q 003328 42 PNLQLFLLITKGIAPVSM--QISDLFFEGTEELKVLSLIG-IHFS-SLPSSLGRLINLQTLCLDWCQLE-DV-AAIGQLK 115 (829)
Q Consensus 42 ~~Lr~L~l~~~~~~~~~~--~lp~~~~~~l~~Lr~L~L~~-~~i~-~lp~~l~~l~~Lr~L~L~~~~l~-~l-~~i~~L~ 115 (829)
.++++|+++++. ..+ .+|.. |.++++|++|++++ +.+. .+|..++++++|++|++++|.+. .+ ..+++++
T Consensus 50 ~~l~~L~L~~~~---l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN---LPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCC---CSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCC---ccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 589999999998 344 67876 58999999999995 7776 58999999999999999999998 45 7899999
Q ss_pred CCcEEEccCCCCc-cchhhhcCCCCCCEEeccCCCCCCccChhhhcCCC-cccEEEccCCccccccccCCCccchhhhcC
Q 003328 116 KLEILSFRGSDIK-QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFS-RLEELYMGDSFSQWDKVEGGSNASLAELKG 193 (829)
Q Consensus 116 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 193 (829)
+|++|++++|.++ .+|..++++++|++|++++|...+.+|.. ++++. +|++|++++|.+. + .....+..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----~---~~~~~~~~ 196 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT-----G---KIPPTFAN 196 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE-----E---ECCGGGGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee-----c---cCChHHhC
Confidence 9999999999998 78999999999999999999854578887 88998 9999999999765 1 23344455
Q ss_pred CCCCcEEEeecCCCCC
Q 003328 194 LSKLTTLEIHVWDAQI 209 (829)
Q Consensus 194 l~~L~~L~l~~~~~~~ 209 (829)
++ |+.|++++|.+..
T Consensus 197 l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CC-CSEEECCSSEEEE
T ss_pred Cc-ccEEECcCCcccC
Confidence 55 9999999877643
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.4e-17 Score=175.79 Aligned_cols=191 Identities=17% Similarity=0.211 Sum_probs=168.6
Q ss_pred CCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 17 TIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
..++++++|+++++.+..++....+++|++|++++|. +..++. +.++++|++|++++|.++.++ .+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~----i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ----ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc----CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 3467999999999999999866689999999999998 677776 699999999999999999986 689999999
Q ss_pred EEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 97 TLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 97 ~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|++++|.++.+..+.++++|++|++++|.++.++. ++++++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC
Confidence 999999999999779999999999999999998876 8999999999999987 777776 899999999999999775
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEcc
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGE 228 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 228 (829)
.+..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 187 ----------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 ----------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ----------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred ----------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 122377889999999999999888765678999999997554
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.1e-17 Score=172.47 Aligned_cols=196 Identities=21% Similarity=0.221 Sum_probs=167.8
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 95 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L 95 (829)
+..+++++++++++++++.+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.++.. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 3456789999999999999997663 689999999999 5667666679999999999999999988765 889999
Q ss_pred cEEEccccCCCCc-ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 96 QTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 96 r~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
++|++++|.++.+ ..+..+++|++|++++|.++.+| ..++++++|++|++++|. +..+|.+.+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence 9999999999988 78899999999999999999887 458999999999999987 77888876789999999999999
Q ss_pred ccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc-ccccccEEEEEE
Q 003328 174 FSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW-VSVELQRYKICI 226 (829)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~ 226 (829)
.+. ......+..+++|+.|+++.|.+..+|..+ ...+|+.+.+.+
T Consensus 159 ~l~--------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 159 NLT--------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCS--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred cCC--------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 775 122234567889999999999999888764 566788887753
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.7e-17 Score=170.81 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=147.7
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 100 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L 100 (829)
-++++.+++.+..+|... .++|++|++++|. +..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 378899999999998654 4689999999998 6778776679999999999999999885 778999999999999
Q ss_pred cccC-CCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 101 DWCQ-LEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 101 ~~~~-l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
++|. +..+ ..+.++++|++|++++|.++.+ |..++++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc
Confidence 9997 8876 7899999999999999999877 5668999999999999987 67777665789999999999998764
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCc
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 210 (829)
......+..+++|+.|++++|.+..+
T Consensus 167 --------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 --------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp --------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred --------ccCHHHhcCccccCEEECCCCccccc
Confidence 12223466788999999998877644
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=2e-19 Score=202.09 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=91.0
Q ss_pred CCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCC-----CCchhhcCCCCCcEEEccccCCCCc---ccccC
Q 003328 42 PNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFS-----SLPSSLGRLINLQTLCLDWCQLEDV---AAIGQ 113 (829)
Q Consensus 42 ~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-----~lp~~l~~l~~Lr~L~L~~~~l~~l---~~i~~ 113 (829)
++|++|+++++. ........+|..+++|++|++++|.++ .++..+..+++|++|++++|.+... .....
T Consensus 3 ~~l~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcc---cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 356677776666 112222333566777777777777766 3566666777777777777766532 22233
Q ss_pred CC----CCcEEEccCCCCc-----cchhhhcCCCCCCEEeccCCCCCCccChhhh-----cCCCcccEEEccCCcccccc
Q 003328 114 LK----KLEILSFRGSDIK-----QLPLEIGQLTRLQLLDLSNCSSLVVIAPNVI-----SKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 114 L~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l-----~~L~~L~~L~l~~~~~~~~~ 179 (829)
+. +|++|++++|.++ .+|..+.++++|++|++++|. +.......+ ....+|++|++++|.+...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~- 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA- 157 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-
Confidence 44 5777777777666 356667777777777777766 332211111 1245677777777755400
Q ss_pred ccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 180 VEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 180 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
........++.+++|+.|+++++.+
T Consensus 158 ---~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 ---SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ---GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ---HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 0011223345566777777766554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=3.9e-17 Score=182.57 Aligned_cols=194 Identities=20% Similarity=0.272 Sum_probs=162.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLI 93 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~ 93 (829)
+.++++++|++++|.+..+++ .+ ++++|++|++++|. +..++...|.++++|++|+|++|.++.+|.. +..++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc----cCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 345799999999999998754 33 89999999999998 6677766689999999999999999998765 78999
Q ss_pred CCcEEEccccCCCCc--ccccCCCCCcEEEccCC-CCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEE
Q 003328 94 NLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGS-DIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELY 169 (829)
Q Consensus 94 ~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 169 (829)
+|++|++++|.+..+ ..+.++++|++|+++++ .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~ 224 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELE 224 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEE
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEE
Confidence 999999999999987 57999999999999995 6777766 48899999999999987 778875 89999999999
Q ss_pred ccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEE
Q 003328 170 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKIC 225 (829)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 225 (829)
+++|.+. ......+.++++|+.|++++|.+..++... .+++|+.|+++
T Consensus 225 Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 225 MSGNHFP--------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CTTSCCS--------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCcCc--------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 9999775 234566788999999999999887664432 44556655553
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=182.24 Aligned_cols=193 Identities=19% Similarity=0.283 Sum_probs=162.5
Q ss_pred CCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLI 93 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~ 93 (829)
..++++++|++++|.+..++. .+ ++++|++|++++|. +..++...|.++++|++|++++|.++.+|. .+..++
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC----CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc----CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 345789999999999998764 33 89999999999999 677777778999999999999999999876 589999
Q ss_pred CCcEEEccccCCCCc--ccccCCCCCcEEEccCC-CCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEE
Q 003328 94 NLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGS-DIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELY 169 (829)
Q Consensus 94 ~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 169 (829)
+|++|++++|.+..+ ..+.++++|++|+++++ .+..+|. .+.++++|++|++++|. +..+|. +..+++|++|+
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~ 213 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELD 213 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEE
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEE
Confidence 999999999999987 57999999999999995 6777765 58999999999999987 888886 89999999999
Q ss_pred ccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEE
Q 003328 170 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKI 224 (829)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 224 (829)
+++|.+. ......+.++++|+.|++++|.+..++... .+++|+.|++
T Consensus 214 Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 214 LSGNHLS--------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CTTSCCC--------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCccC--------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 9999765 233456778899999999999887665432 4455555544
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.6e-17 Score=175.51 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=156.4
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCccccccc---chhhhcCCCCccEEEecCCCCC
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQI---SDLFFEGTEELKVLSLIGIHFS 83 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~l---p~~~~~~l~~Lr~L~L~~~~i~ 83 (829)
++..+|. ..++++++|++++|.+..+|... ++++|++|++++|. +..+ +..+ .++++|++|++++|.+.
T Consensus 18 ~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 18 GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG----LSFKGCCSQSD-FGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCEEEEEEHHH-HSCSCCCEEECCSCSEE
T ss_pred CcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc----cCcccCccccc-ccccccCEEECCCCccc
Confidence 3444443 44579999999999999998753 89999999999998 3333 4554 68999999999999999
Q ss_pred CCchhhcCCCCCcEEEccccCCCCc---ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCC-ccChhh
Q 003328 84 SLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLV-VIAPNV 158 (829)
Q Consensus 84 ~lp~~l~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~-~lp~~~ 158 (829)
.+|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.+... |..++++++|++|++++|.... .+|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 9999999999999999999998866 4789999999999999998854 5668999999999999987333 35665
Q ss_pred hcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC
Q 003328 159 ISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ 212 (829)
Q Consensus 159 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 212 (829)
++.+++|++|++++|.+. ......+..+++|+.|++++|.+..++.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred HhhCcCCCEEECCCCCcC--------CcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 889999999999999765 2234567788899999999998876654
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-16 Score=165.56 Aligned_cols=186 Identities=23% Similarity=0.340 Sum_probs=157.7
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++..+|. ..++++++|++++|.+..++.. + .+++|++|++++|. +..+|..+|.++++|++|++++|.++.+|
T Consensus 27 ~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 27 KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK----LQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC----CSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc----cCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 3444442 3457899999999999988863 3 89999999999998 67888888899999999999999999877
Q ss_pred hh-hcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCC
Q 003328 87 SS-LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKF 162 (829)
Q Consensus 87 ~~-l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L 162 (829)
.. +..+++|++|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 54 68999999999999999977 5689999999999999999998876 7899999999999987 777877658899
Q ss_pred CcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 163 SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 181 ~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDNNQLK--------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCCCcCC--------cCCHHHhccccCCCEEEecCCCee
Confidence 99999999999765 122234667889999999988754
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3e-17 Score=166.62 Aligned_cols=202 Identities=13% Similarity=0.197 Sum_probs=168.7
Q ss_pred ccccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecC-CCCC
Q 003328 7 VADVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIG-IHFS 83 (829)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~-~~i~ 83 (829)
+.++..+|. .++++++|++++|.++.++.. + .+++|++|++++|. .+..++...|.++++|++|++++ |.++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~---~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV---TLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS---SCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC---CcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 345666776 567999999999999998873 3 89999999999996 36778876789999999999998 8999
Q ss_pred CCc-hhhcCCCCCcEEEccccCCCCcccccCCCCCc---EEEccCC-CCccchhh-hcCCCCCC-EEeccCCCCCCccCh
Q 003328 84 SLP-SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLE---ILSFRGS-DIKQLPLE-IGQLTRLQ-LLDLSNCSSLVVIAP 156 (829)
Q Consensus 84 ~lp-~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~ 156 (829)
.+| ..+..+++|++|++++|.++.+..++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++|. +..+|.
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~ 173 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG 173 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECT
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCH
Confidence 876 46789999999999999999885588888888 9999999 99988765 88999999 99999987 778888
Q ss_pred hhhcCCCcccEEEccCCc-cccccccCCCccchhhhcCC-CCCcEEEeecCCCCCcCCccccccccEEEE
Q 003328 157 NVISKFSRLEELYMGDSF-SQWDKVEGGSNASLAELKGL-SKLTTLEIHVWDAQILPQDWVSVELQRYKI 224 (829)
Q Consensus 157 ~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 224 (829)
. ....++|++|++++|. +. ......+..+ ++|+.|+++.+.+..+|.. .+++|+.|++
T Consensus 174 ~-~~~~~~L~~L~L~~n~~l~--------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 174 Y-AFNGTKLDAVYLNKNKYLT--------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp T-TTTTCEEEEEECTTCTTCC--------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred h-hcCCCCCCEEEcCCCCCcc--------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 6 4444899999999984 53 1223446677 8999999999999888876 6788888876
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.2e-17 Score=168.74 Aligned_cols=196 Identities=21% Similarity=0.218 Sum_probs=161.0
Q ss_pred CCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCC
Q 003328 18 IRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLIN 94 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~ 94 (829)
.++++++|++++|.+..++. .+ .+++|++|++++|. +..++...|.++++|++|++++|.++.++ ..+..+++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 45689999999999998875 33 89999999999998 66777766799999999999999998855 67899999
Q ss_pred CcEEEccccCCCCc--ccccCCCCCcEEEccCCCCcc--chhhhcCCCCCCEEeccCCCCCCccChhhhcCCCccc----
Q 003328 95 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQ--LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLE---- 166 (829)
Q Consensus 95 Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~---- 166 (829)
|++|++++|.+..+ ..++++++|++|++++|.++. +|..++++++|++|++++|. +..++...+..+.+|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccce
Confidence 99999999999877 469999999999999999986 68899999999999999987 6777654466666666
Q ss_pred EEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEEEEEc
Q 003328 167 ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYKICIG 227 (829)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 227 (829)
+|++++|.+. ..........+|+.|++++|.+..++... .+++|+.++++++
T Consensus 181 ~L~ls~n~l~---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 181 SLDLSLNPMN---------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEECCSSCCC---------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCCCccc---------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 8999988765 11122223347999999999998887753 6788999887643
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.1e-16 Score=168.87 Aligned_cols=183 Identities=20% Similarity=0.295 Sum_probs=160.2
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS 88 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~ 88 (829)
++..++++..+++|++|++++|.+..++....+++|++|++++|. +..++. +.++++|++|++++|.++.+|.
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~----l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP----LKNVSA--IAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC----CSCCGG--GTTCTTCCEEECTTSCCCCCGG-
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc----CCCchh--hcCCCCCCEEECCCCCCCCchh-
Confidence 455566777889999999999999998885589999999999999 566663 6899999999999999999875
Q ss_pred hcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEE
Q 003328 89 LGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEEL 168 (829)
Q Consensus 89 l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 168 (829)
+..+++|++|++++|.+..+..++++++|++|++++|.++.++. ++++++|++|++++|. +..++. +..+++|++|
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEE
Confidence 89999999999999999988669999999999999999999887 9999999999999987 777776 8999999999
Q ss_pred EccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC
Q 003328 169 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ 212 (829)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 212 (829)
++++|.+. .+..+..+++|+.|++++|.+...+.
T Consensus 201 ~L~~N~l~----------~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 201 HLKNNQIS----------DVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECTTSCCC----------BCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EccCCccC----------ccccccCCCCCCEEEccCCeeecCCe
Confidence 99999775 12247889999999999988765543
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=5.4e-19 Score=198.61 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=127.4
Q ss_pred CCCCcEEEcCCCCCCCCC--Ccc-CCCCCcEEEeecCCCccc-ccccchhhhcCCCCccEEEecCCCCCC-Cchhh-cCC
Q 003328 19 RKDPIAISLPQRDIQELP--ERL-QCPNLQLFLLITKGIAPV-SMQISDLFFEGTEELKVLSLIGIHFSS-LPSSL-GRL 92 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~--~~~-~~~~Lr~L~l~~~~~~~~-~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l-~~l 92 (829)
++++++|+++++.+...+ ..+ .+++|++|++++|..... ...++.. +..+++|++|++++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 457899999999887543 213 688999999999983210 0134444 5889999999999998865 22233 345
Q ss_pred C----CCcEEEccccCCCC-----c-ccccCCCCCcEEEccCCCCccc-hh----h-hcCCCCCCEEeccCCCCCCc---
Q 003328 93 I----NLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRGSDIKQL-PL----E-IGQLTRLQLLDLSNCSSLVV--- 153 (829)
Q Consensus 93 ~----~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~l-p~----~-i~~L~~L~~L~l~~~~~l~~--- 153 (829)
+ +|++|++++|.+.. + ..+.++++|++|++++|.++.. +. . ....++|++|++++|. +..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 5 79999999998873 4 7788999999999999987632 22 2 2236789999999986 443
Q ss_pred --cChhhhcCCCcccEEEccCCccccccccCCCccchhhhc-----CCCCCcEEEeecCCCCC
Q 003328 154 --IAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELK-----GLSKLTTLEIHVWDAQI 209 (829)
Q Consensus 154 --lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-----~l~~L~~L~l~~~~~~~ 209 (829)
++.. +..+++|++|++++|.+. ...+..+. ..++|+.|+++++.+..
T Consensus 160 ~~l~~~-l~~~~~L~~L~L~~n~i~--------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 160 EPLASV-LRAKPDFKELTVSNNDIN--------EAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHH-HHHCTTCCEEECCSSBCH--------HHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHHH-HhhCCCCCEEECcCCCcc--------hHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 2333 677899999999998764 11222222 35689999999887654
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=3.5e-18 Score=181.41 Aligned_cols=244 Identities=14% Similarity=0.030 Sum_probs=113.0
Q ss_pred CCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCcccccCCCCCcEE
Q 003328 41 CPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEIL 120 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 120 (829)
+++|++|++++|. +..++...|.++++|++|++++|.++..+. +..+++|++|++++|.++.+. ..++|++|
T Consensus 33 ~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSC----CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEE
T ss_pred CCCCCEEECcCCc----cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEE
Confidence 3345555555544 333333333455555555555555444332 444555555555555443331 12445555
Q ss_pred EccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhh-cCCCCCcE
Q 003328 121 SFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAEL-KGLSKLTT 199 (829)
Q Consensus 121 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-~~l~~L~~ 199 (829)
++++|.++.++.. .+++|++|++++|. +..++...++.+++|++|++++|.+. ......+ ..+++|+.
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTLEH 173 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTCCE
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC--------cccHHHHhhccCcCCE
Confidence 5555544444322 24445555555444 33333222444455555555544432 1111122 23444555
Q ss_pred EEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccccCcc
Q 003328 200 LEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQ 279 (829)
Q Consensus 200 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~ 279 (829)
|++++|.+..++....+++|+.|+++.+... .++.. -..+++|+.|+++++ .++
T Consensus 174 L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~l~~~--~~~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-----------------------FMGPE--FQSAAGVTWISLRNN-KLV 227 (317)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCC-----------------------EECGG--GGGGTTCSEEECTTS-CCC
T ss_pred EECCCCcCcccccccccccCCEEECCCCcCC-----------------------cchhh--hcccCcccEEECcCC-ccc
Confidence 5555554444433333444444444322110 00000 011356677777665 333
Q ss_pred ccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchh
Q 003328 280 NVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLET 336 (829)
Q Consensus 280 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 336 (829)
.+...+ ..+++|+.|++++++-.... .+. ....+++|+.+++.++..++.
T Consensus 228 ~l~~~~---~~l~~L~~L~l~~N~~~~~~--~~~--~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 228 LIEKAL---RFSQNLEHFDLRGNGFHCGT--LRD--FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTC---CCCTTCCEEECTTCCCBHHH--HHH--HHHTCHHHHHHHHHHHHHHHS
T ss_pred chhhHh---hcCCCCCEEEccCCCccCcC--HHH--HHhccccceEEECCCchhccC
Confidence 444443 37788999999887643110 011 134467788888877776664
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=4.7e-16 Score=161.53 Aligned_cols=178 Identities=19% Similarity=0.240 Sum_probs=145.0
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~ 101 (829)
..++-.+..+.++|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCccccCCCCC-CCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence 345666777888887553 579999999998 677776567999999999999999988654 68999999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCc--cChhhhcCCCcccEEEccCCccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVV--IAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|.++.+ ..+.++.+|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCC
Confidence 9999876 679999999999999999998866 58999999999999987 554 5665 899999999999999775
Q ss_pred cccccCCCccchhhhcCCCCCc-EEEeecCCCCCcCC
Q 003328 177 WDKVEGGSNASLAELKGLSKLT-TLEIHVWDAQILPQ 212 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~-~L~l~~~~~~~~~~ 212 (829)
+.....+..+..++.|. .|+++++.+..++.
T Consensus 163 -----~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 163 -----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -----EECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -----cCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 22234556666666666 78998888765554
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.6e-16 Score=166.01 Aligned_cols=172 Identities=23% Similarity=0.327 Sum_probs=135.8
Q ss_pred CCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 17 TIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
..++++++|++++|.+..++....+++|++|++++|. +..++. +.++++|++|++++|.++.+|. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~----l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK----LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCc----cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 3456888888888888888765578888888888888 556665 5888888888888888887664 78888888
Q ss_pred EEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 97 TLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 97 ~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|++++|.+..+..+..+++|++|++++|.++.+ ..++++++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC
Confidence 8888888888887788888888888888888877 468888888888888876 666665 788888888888888664
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCC
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI 209 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 209 (829)
.+..+..+++|+.|++++|.+..
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ----------CChhhccCCCCCEEECcCCcccC
Confidence 23447778888888888776544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3.1e-16 Score=162.35 Aligned_cols=178 Identities=24% Similarity=0.290 Sum_probs=143.4
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLIN 94 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~~ 94 (829)
...+++++.|+++++.+..++....+++|++|++++|. +..++ . +.++++|++|++++|.++.+|.. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~----l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK----LHDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC----CCCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCC----CCCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34567899999999998888776688999999999988 45554 3 58899999999999999886654 688999
Q ss_pred CcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEcc
Q 003328 95 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 171 (829)
Q Consensus 95 Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 171 (829)
|++|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++.+++|++|+++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence 99999999998877 4578999999999999998888765 5889999999999987 667776656889999999999
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
+|.+. ......+..+++|+.|++++|...
T Consensus 190 ~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 190 QNQLK--------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SSCCS--------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCC--------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 88765 122234667888999999887643
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5.2e-16 Score=158.64 Aligned_cols=175 Identities=23% Similarity=0.333 Sum_probs=148.3
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTL 98 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L 98 (829)
++.++++++++.+..+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.++. .+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCC----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 467889999999999997664 689999999999 666766667999999999999999998654 47899999999
Q ss_pred EccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcc
Q 003328 99 CLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 99 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
++++|.++.+ ..+..+.+|++|++++|.++.+|.. ++++++|++|++++|. +..++.+.++.+++|++|++++|.+
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC
Confidence 9999999877 6789999999999999999988776 6889999999999987 7788875588999999999999977
Q ss_pred ccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 176 QWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
. ......+..+++|+.|++++|.+.
T Consensus 168 ~--------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 168 Q--------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp S--------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred C--------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 5 222345677889999999988764
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.5e-17 Score=174.38 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=108.0
Q ss_pred CCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhh------cCCCCccEEEecCCCCC-CCchhh--
Q 003328 20 KDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFF------EGTEELKVLSLIGIHFS-SLPSSL-- 89 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~------~~l~~Lr~L~L~~~~i~-~lp~~l-- 89 (829)
++++++++++|.+ .+|..+ .. |++|++++|... ...+|..++ .++++|++|++++|.++ .+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~--~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR--AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE--EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHHHH--Hhhccccccccc--CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4566677777776 566533 21 666666666510 123444321 15666777777776666 356554
Q ss_pred cCCCCCcEEEccccCCCCc-ccccCC-----CCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCCCCc--cChhhh-
Q 003328 90 GRLINLQTLCLDWCQLEDV-AAIGQL-----KKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSSLVV--IAPNVI- 159 (829)
Q Consensus 90 ~~l~~Lr~L~L~~~~l~~l-~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~~~l- 159 (829)
..+++|++|++++|.++.+ ..++.+ ++|++|++++|.+..+| ..++++++|++|++++|...+. ++.. +
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HH
Confidence 6666777777777666654 444444 66777777777666554 5566677777777766653332 1222 3
Q ss_pred -cCCCcccEEEccCCccccccccCCCccch-hhhcCCCCCcEEEeecCCCCCcCC---ccccccccEEEEE
Q 003328 160 -SKFSRLEELYMGDSFSQWDKVEGGSNASL-AELKGLSKLTTLEIHVWDAQILPQ---DWVSVELQRYKIC 225 (829)
Q Consensus 160 -~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~l~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~ 225 (829)
+++++|++|++++|.+. ..+... .-+..+++|+.|++++|.+...+. ...+++|+.|+++
T Consensus 197 ~~~l~~L~~L~L~~N~l~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGME------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp TTSCTTCCEEECTTSCCC------CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred hccCCCCCEEECCCCcCc------chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 56667777777666543 001111 122355666777777666655331 1234566666553
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=8.4e-16 Score=160.36 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=155.3
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++..+|. ..++++++|++++|.+..+++ .+ .+++|++|++++|. +..++.. ..+++|++|++++|.++.+|
T Consensus 21 ~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~--~~l~~L~~L~Ls~N~l~~l~ 93 (290)
T 1p9a_G 21 NLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVD--GTLPVLGTLDLSHNQLQSLP 93 (290)
T ss_dssp CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC----CCEEECC--SCCTTCCEEECCSSCCSSCC
T ss_pred CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc----cCcccCC--CCCCcCCEEECCCCcCCcCc
Confidence 3444442 345799999999999997754 33 89999999999999 6667653 78999999999999999999
Q ss_pred hhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCC
Q 003328 87 SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFS 163 (829)
Q Consensus 87 ~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 163 (829)
..+..+++|++|++++|+++.+ ..|.++.+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.+.+.+++
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE 172 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcC
Confidence 9999999999999999999987 6799999999999999999988766 6899999999999987 8889887678899
Q ss_pred cccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 164 RLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
+|++|++++|.+. .....+....+|+.+++.+|...
T Consensus 173 ~L~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 173 NLDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCcCC---------ccChhhcccccCCeEEeCCCCcc
Confidence 9999999999875 23344556678999999988754
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=5.5e-17 Score=172.15 Aligned_cols=266 Identities=14% Similarity=0.082 Sum_probs=182.3
Q ss_pred CCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCcccccCCCCCcEEE
Q 003328 43 NLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILS 121 (829)
Q Consensus 43 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 121 (829)
+++..+++.+. ....+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.+..+..+..+++|++|+
T Consensus 11 ~l~i~~ls~~~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSS----LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTT----HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEE
T ss_pred ceeEeeccccc----hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEE
Confidence 35555666666 56667777788899999999999999865 67999999999999999998875599999999999
Q ss_pred ccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEE
Q 003328 122 FRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLE 201 (829)
Q Consensus 122 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 201 (829)
+++|.++.+|. .++|++|++++|. +..++. ..+++|++|++++|.+. ......+..+++|+.|+
T Consensus 87 Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 87 LNNNYVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT--------MLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp CCSSEEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC--------SGGGBCTGGGSSEEEEE
T ss_pred CcCCccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC--------CccchhhhccCCCCEEE
Confidence 99999988763 4899999999987 666664 45889999999999775 12223455678899999
Q ss_pred eecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhhhHHHhhhhheeEeeccccCcccc
Q 003328 202 IHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENYGMKMLLKEAEEIHLIKLKGVQNV 281 (829)
Q Consensus 202 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~ 281 (829)
+++|.+..++...- ...+++|++|+++++. ++.+
T Consensus 151 Ls~N~l~~~~~~~~---------------------------------------------~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 151 LKLNEIDTVNFAEL---------------------------------------------AASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp CTTSCCCEEEGGGG---------------------------------------------GGGTTTCCEEECTTSC-CCEE
T ss_pred CCCCCCCcccHHHH---------------------------------------------hhccCcCCEEECCCCc-Cccc
Confidence 99988765432210 0012445555555543 2222
Q ss_pred ccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCC
Q 003328 282 VHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDK 361 (829)
Q Consensus 282 ~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~ 361 (829)
+. ...+++|++|+++++. ++.++.. ...+++|+.|+++++. ++.+.. ....+++|+.|++.+++-
T Consensus 185 -~~---~~~l~~L~~L~Ls~N~-l~~l~~~-----~~~l~~L~~L~L~~N~-l~~l~~----~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 185 -KG---QVVFAKLKTLDLSSNK-LAFMGPE-----FQSAAGVTWISLRNNK-LVLIEK----ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -EC---CCCCTTCCEEECCSSC-CCEECGG-----GGGGTTCSEEECTTSC-CCEECT----TCCCCTTCCEEECTTCCC
T ss_pred -cc---ccccccCCEEECCCCc-CCcchhh-----hcccCcccEEECcCCc-ccchhh----HhhcCCCCCEEEccCCCc
Confidence 11 2257788888888775 3333211 3346778888887763 333221 134677888888887754
Q ss_pred CccccchHHHHhhcccceEEEecccCcce
Q 003328 362 LKHLFSFSMAKNLLRLQKVEVFFCDDLEM 390 (829)
Q Consensus 362 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 390 (829)
-... ...+...++.|+.+++.++..++.
T Consensus 250 ~~~~-~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 250 HCGT-LRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp BHHH-HHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCcC-HHHHHhccccceEEECCCchhccC
Confidence 3121 124456667777777766655543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=9.5e-16 Score=158.66 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=143.7
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS 88 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~ 88 (829)
++..++++..+++|++|++++|.+..++....+++|++|++++|. +..++...|.++++|++|++++|.++.+|..
T Consensus 52 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 127 (272)
T 3rfs_A 52 DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ----LQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127 (272)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc----cCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence 456677778889999999999999988766689999999999998 6778877789999999999999999987765
Q ss_pred -hcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCc
Q 003328 89 -LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSR 164 (829)
Q Consensus 89 -l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~ 164 (829)
+..+++|++|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++++++
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcC
Confidence 78999999999999999987 4579999999999999999988765 6899999999999987 66777665789999
Q ss_pred ccEEEccCCccc
Q 003328 165 LEELYMGDSFSQ 176 (829)
Q Consensus 165 L~~L~l~~~~~~ 176 (829)
|++|++++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (272)
T 3rfs_A 207 LQYIWLHDNPWD 218 (272)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEccCCCcc
Confidence 999999998764
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=4.7e-15 Score=170.09 Aligned_cols=237 Identities=19% Similarity=0.100 Sum_probs=184.6
Q ss_pred CCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEE
Q 003328 19 RKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 98 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L 98 (829)
++++++|++++|.+..+|. .+++|++|++++|. +..+|. .+++|++|++++|.++.+|. .+.+|++|
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~----l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ----LTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC----CSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc----CCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 4799999999999999988 67899999999999 667875 68999999999999999987 67899999
Q ss_pred EccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 99 CLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 99 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
++++|.++.+.. .+++|++|++++|.++.+|. .+.+|+.|++++|. +..+| ..+++|++|++++|.+.
T Consensus 127 ~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~-- 194 (622)
T 3g06_A 127 WIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLA-- 194 (622)
T ss_dssp ECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCS--
T ss_pred ECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCC--
Confidence 999999988832 24899999999999999885 35789999999987 77787 34789999999998765
Q ss_pred cccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccccccCCCCCCCccEEEeccCCccccchhhh
Q 003328 179 KVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEARRIWPVNSETSRLVWLHGLENVSTLLENY 258 (829)
Q Consensus 179 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~l~~~ 258 (829)
..+. ..++|+.|+++.|.+..++.. +++|+.|+++.+.... ++
T Consensus 195 ----~l~~------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-----------------------lp-- 237 (622)
T 3g06_A 195 ----SLPT------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS-----------------------LP-- 237 (622)
T ss_dssp ----CCCC------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-----------------------CC--
T ss_pred ----CCCC------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc-----------------------CC--
Confidence 1111 246899999999998888764 4789988876443211 11
Q ss_pred hHHHhhhhheeEeeccccCccccccccCCCCCCCCCcEEEEeecCCceEEecccCcccccccccccceecccccc
Q 003328 259 GMKMLLKEAEEIHLIKLKGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSN 333 (829)
Q Consensus 259 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~ 333 (829)
..+++|+.|+++++. ++ .++ . .+++|+.|+++++. ++.++. ....+++|+.|++.+++-
T Consensus 238 ---~~l~~L~~L~Ls~N~-L~----~lp-~-~~~~L~~L~Ls~N~-L~~lp~-----~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 ---VLPSELKELMVSGNR-LT----SLP-M-LPSGLLSLSVYRNQ-LTRLPE-----SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ---CCCTTCCEEECCSSC-CS----CCC-C-CCTTCCEEECCSSC-CCSCCG-----GGGGSCTTCEEECCSCCC
T ss_pred ---CCCCcCcEEECCCCC-CC----cCC-c-ccccCcEEeCCCCC-CCcCCH-----HHhhccccCEEEecCCCC
Confidence 124788899988863 33 233 1 56889999999885 444421 145688999999988764
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.3e-15 Score=152.60 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=139.4
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCch
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPS 87 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~ 87 (829)
+..+|. ..++++++|++++|.+..++.. + .+++|++|++++|. +..++...|.++++|++|++++|.++.+|.
T Consensus 26 l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 26 LDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc----CCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 344442 3457999999999999988763 3 89999999999998 667777767999999999999999998774
Q ss_pred -hhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCC
Q 003328 88 -SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFS 163 (829)
Q Consensus 88 -~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~ 163 (829)
.+..+++|++|++++|.++.+ ..+.++.+|++|++++|.++.+|. .++++++|++|++++|. +..++...+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 568999999999999999988 457999999999999999999887 58999999999999987 7777775588999
Q ss_pred cccEEEccCCccc
Q 003328 164 RLEELYMGDSFSQ 176 (829)
Q Consensus 164 ~L~~L~l~~~~~~ 176 (829)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999775
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2.3e-15 Score=157.17 Aligned_cols=187 Identities=21% Similarity=0.266 Sum_probs=159.2
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEcc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 101 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~ 101 (829)
+..+.+....+..+.....+++|++|++++|. +..++. +..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~----i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSD----IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSC----CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCC----cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 44445666666665554578899999999998 667764 5899999999999999999887 9999999999999
Q ss_pred ccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccccc
Q 003328 102 WCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVE 181 (829)
Q Consensus 102 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 181 (829)
+|.++.+..++++++|++|++++|.++.++ .++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 99 ~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~----- 169 (291)
T 1h6t_A 99 ENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS----- 169 (291)
T ss_dssp SSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-----
T ss_pred CCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-----
Confidence 999999977999999999999999999885 68999999999999987 677743 899999999999999775
Q ss_pred CCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEccc
Q 003328 182 GGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIGEA 229 (829)
Q Consensus 182 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 229 (829)
.+..+..+++|+.|+++.|.+..++....+++|+.|+++++..
T Consensus 170 -----~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 170 -----DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -----CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred -----cchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 1222788999999999999998887766889999999976543
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.1e-15 Score=171.84 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=97.8
Q ss_pred CCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 20 KDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
++|++|++++|.+..+++ .+ .+++|++|++++|. +...++ |..+++|++|++++|.++.+|. .++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV----LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC----CEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC----CCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 366667776666666553 22 66666666666666 333333 4666666666666666655443 256666
Q ss_pred EEccccCCCCcccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhc-CCCcccEEEccCCcc
Q 003328 98 LCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVIS-KFSRLEELYMGDSFS 175 (829)
Q Consensus 98 L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-~L~~L~~L~l~~~~~ 175 (829)
|++++|.+..+.. ..+++|++|++++|.++.+ |..++++++|++|++++|...+..|.. +. .+++|++|++++|.+
T Consensus 104 L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCCCcc
Confidence 6666666665511 2345666666666666655 335666666666666666532223333 33 566666666666655
Q ss_pred ccccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 176 QWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
. .+.....+++|+.|++++|.+..++
T Consensus 182 ~----------~~~~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 182 Y----------DVKGQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp C----------EEECCCCCTTCCEEECCSSCCCEEC
T ss_pred c----------cccccccCCCCCEEECCCCCCCCCC
Confidence 3 1122234556666666666655443
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=2.5e-15 Score=172.16 Aligned_cols=174 Identities=24% Similarity=0.335 Sum_probs=148.2
Q ss_pred CCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 003328 17 TIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 96 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr 96 (829)
..+++|+.|+++++.+..++....+++|++|++++|. +..++. +..+++|++|+|++|.+..+| .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~----l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK----LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC----CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC----CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 4567899999999999988876689999999999998 566665 589999999999999998876 688999999
Q ss_pred EEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 97 TLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 97 ~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|+|++|.+..+..+..+++|++|++++|.++.+ ..++++++|++|++++|. +..+++ +..+++|++|++++|.+.
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC
Confidence 9999999998888899999999999999999888 578899999999999987 666655 789999999999998765
Q ss_pred cccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 177 WDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 177 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
.+..+..+++|+.|+++.|.+...|
T Consensus 189 ----------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 ----------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ----------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred ----------CChHHccCCCCCEEEccCCcCcCCc
Confidence 2356788899999999988765443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=161.56 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=99.0
Q ss_pred CCcEEEcCCCCCCC-----CCCccCCCCCcEEEeecCCCcccccccchhhh-cCCCCccEEEecCCCCCC-Cc----hhh
Q 003328 21 DPIAISLPQRDIQE-----LPERLQCPNLQLFLLITKGIAPVSMQISDLFF-EGTEELKVLSLIGIHFSS-LP----SSL 89 (829)
Q Consensus 21 ~l~~L~l~~~~~~~-----l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~-~~l~~Lr~L~L~~~~i~~-lp----~~l 89 (829)
.++.+.+.++.+.. +.....+++|++|++++|. .....|..++ .++++|++|++++|.++. .| ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 45566665555431 1112234556666666666 2334444322 566666666666666654 22 223
Q ss_pred cCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCcc---chhh--hcCCCCCCEEeccCCCCCCccChh---hh
Q 003328 90 GRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQ---LPLE--IGQLTRLQLLDLSNCSSLVVIAPN---VI 159 (829)
Q Consensus 90 ~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~l 159 (829)
..+++|++|++++|.+..+ ..++++++|++|++++|.+.. ++.. ++++++|++|++++|. +..++.. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 4566666666666666544 456666666666666666542 3222 2566666666666665 4433331 23
Q ss_pred cCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc
Q 003328 160 SKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD 213 (829)
Q Consensus 160 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 213 (829)
+.+++|++|++++|.+. +..+..+..+..+++|++|++++|.+..+|..
T Consensus 221 ~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLR-----ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp HHTCCCSSEECTTSCCC-----CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred hcCCCCCEEECCCCCCC-----ccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 55666666666666554 11122223333335666666666666655544
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.3e-15 Score=169.20 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=114.3
Q ss_pred CCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCcccccCCCCCcEE
Q 003328 41 CPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEIL 120 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 120 (829)
+++|++|++++|. +..++...|.++++|++|++++|.++..++ ++.+++|++|++++|.++.+. ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEE
T ss_pred CCCccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEE
Confidence 4478888888887 555655556888888888888888876554 788888888888888776652 23788888
Q ss_pred EccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhc-CCCCCcE
Q 003328 121 SFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELK-GLSKLTT 199 (829)
Q Consensus 121 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~l~~L~~ 199 (829)
++++|.++.+|.. .+++|++|++++|. +..+++..++.+++|++|++++|.+. ...+..+. .+++|+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTLEH 173 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTCCE
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCCcccE
Confidence 8888888877653 56788888888877 55543333777888888888888665 22333443 5678888
Q ss_pred EEeecCCCCCcCCccccccccEEE
Q 003328 200 LEIHVWDAQILPQDWVSVELQRYK 223 (829)
Q Consensus 200 L~l~~~~~~~~~~~~~~~~L~~L~ 223 (829)
|++++|.+..++....+++|+.|+
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~ 197 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLD 197 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEE
T ss_pred EecCCCccccccccccCCCCCEEE
Confidence 888887766554433344444443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=3.5e-15 Score=151.30 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=148.1
Q ss_pred cCCCCCCcEEEcCCCC-CCCCCCc-c-CCCCCcEEEeec-CCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcC
Q 003328 16 ETIRKDPIAISLPQRD-IQELPER-L-QCPNLQLFLLIT-KGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGR 91 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~-~~~l~~~-~-~~~~Lr~L~l~~-~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~ 91 (829)
+..+++|++|++++|. +..++.. + .+++|++|++++ |. +..++...|.++++|++|++++|.++.+|. +..
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~----l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~ 125 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN----LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTK 125 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT----CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTT
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC----eeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccc
Confidence 4567899999999997 9988863 3 899999999998 77 778887778999999999999999999987 888
Q ss_pred CCCCc---EEEcccc-CCCCc--ccccCCCCCc-EEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCC-C
Q 003328 92 LINLQ---TLCLDWC-QLEDV--AAIGQLKKLE-ILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKF-S 163 (829)
Q Consensus 92 l~~Lr---~L~L~~~-~l~~l--~~i~~L~~L~-~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L-~ 163 (829)
+.+|+ +|++++| .++.+ ..+.++.+|+ +|++++|.++.+|..+...++|++|++++|..+..++...+..+ +
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 88888 9999999 89988 5699999999 99999999999998766669999999999865888877668889 9
Q ss_pred cccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecC
Q 003328 164 RLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVW 205 (829)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 205 (829)
+|++|+++++.+. ..+ .. .+++|+.|++..+
T Consensus 206 ~L~~L~l~~N~l~------~l~---~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 206 GPSLLDVSQTSVT------ALP---SK--GLEHLKELIARNT 236 (239)
T ss_dssp CCSEEECTTCCCC------CCC---CT--TCTTCSEEECTTC
T ss_pred CCcEEECCCCccc------cCC---hh--HhccCceeeccCc
Confidence 9999999998765 111 11 5668888888754
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.2e-15 Score=145.63 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=94.5
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCC--cccccCCCCC
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKL 117 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~--l~~i~~L~~L 117 (829)
.+++|++|++++|. +..+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++++++|
T Consensus 42 ~l~~L~~L~l~~n~----i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANIN----VTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSC----CSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCC----ccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 45666777777666 44555 2 466677777777776665554 56667777777777776664 2666677777
Q ss_pred cEEEccCCCCcc-chhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCC
Q 003328 118 EILSFRGSDIKQ-LPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSK 196 (829)
Q Consensus 118 ~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 196 (829)
++|++++|.++. .|..++++++|++|++++|..++.+|. ++.+++|++|++++|.+. .+..+..+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~ 182 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPK 182 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSS
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCC
Confidence 777777776663 556667777777777777654556653 667777777777766554 1224555666
Q ss_pred CcEEEeecCCCC
Q 003328 197 LTTLEIHVWDAQ 208 (829)
Q Consensus 197 L~~L~l~~~~~~ 208 (829)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 777777766553
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=3.9e-15 Score=157.44 Aligned_cols=174 Identities=15% Similarity=0.185 Sum_probs=90.9
Q ss_pred CCCCcEEEeecCCCcccccccchhhh-cCCCCccEEEecCCCCCCCchhhcCC-----CCCcEEEccccCCCCc--cccc
Q 003328 41 CPNLQLFLLITKGIAPVSMQISDLFF-EGTEELKVLSLIGIHFSSLPSSLGRL-----INLQTLCLDWCQLEDV--AAIG 112 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~~~lp~~~~-~~l~~Lr~L~L~~~~i~~lp~~l~~l-----~~Lr~L~L~~~~l~~l--~~i~ 112 (829)
+++|++|++++|. ....+|..+| ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+..+ ..++
T Consensus 94 l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 5566666666665 2234444432 55666666666666665555555444 5666666666665544 4555
Q ss_pred CCCCCcEEEccCCCCcc---chhhh--cCCCCCCEEeccCCCCCC---ccChhhhcCCCcccEEEccCCccccccccCCC
Q 003328 113 QLKKLEILSFRGSDIKQ---LPLEI--GQLTRLQLLDLSNCSSLV---VIAPNVISKFSRLEELYMGDSFSQWDKVEGGS 184 (829)
Q Consensus 113 ~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~---~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 184 (829)
++++|++|++++|.+.. +|..+ +++++|++|++++|. +. .++...+..+++|++|++++|.+. +..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLR-----DAA 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCC-----SSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCC-----ccc
Confidence 66666666666665432 23343 556666666666654 33 222222345556666666655543 100
Q ss_pred ccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEE
Q 003328 185 NASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICI 226 (829)
Q Consensus 185 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 226 (829)
....+..+++|+.|++++|.+..+|..+. ++|+.|+++.
T Consensus 245 --~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~ 283 (312)
T 1wwl_A 245 --GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSY 283 (312)
T ss_dssp --CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCS
T ss_pred --chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCC
Confidence 11223344556666666666555555444 5555555543
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=9.4e-15 Score=146.76 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=130.8
Q ss_pred CCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEE
Q 003328 21 DPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLC 99 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~~Lr~L~ 99 (829)
.-+.++.+++.+..+|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.+|.. +..+++|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 35679999999999997654 789999999999 5666555679999999999999999988755 58999999999
Q ss_pred ccccCCCCc--ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 100 LDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 100 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
|++|.++.+ ..+..+.+|++|++++|.++.+|..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999988 45789999999999999999999999999999999999986 77887665888999999999988765
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=8.4e-16 Score=157.87 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=133.5
Q ss_pred CCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 18 IRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
.+.++..+++.++.+.+++....+++|++|++++|. +..++ . +..+++|++|++++|.++.+|. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~----i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN----IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC----CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCC----cccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 344567777888888877754478888888888887 56666 3 5788888999998888888877 888888899
Q ss_pred EEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccc
Q 003328 98 LCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQW 177 (829)
Q Consensus 98 L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 177 (829)
|++++|+++.+..+.. .+|++|++++|.++.+| .++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 90 L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp EECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC-
T ss_pred EECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc-
Confidence 9998888887744444 88889999888888876 58888889999988877 677763 788888999988888765
Q ss_pred ccccCCCccchhhhcCCCCCcEEEeecCCCCCc
Q 003328 178 DKVEGGSNASLAELKGLSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 178 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 210 (829)
.+..+..+++|+.|++++|.+...
T Consensus 164 ---------~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 ---------NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---------BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred ---------chHHhccCCCCCEEeCCCCcccCC
Confidence 115567788888888888766543
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.1e-14 Score=145.14 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=125.8
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~ 101 (829)
+.++.++++++++|..+. +++++|++++|. +..++...|.++++|++|++++|.++.+ |..+..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 678889999999987653 689999999998 6777776678999999999999999875 7788999999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|.++.+ ..+.++.+|++|++++|.++.+ |..+.++++|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999887 4578899999999999999877 5568899999999999987 77777655788889999999888764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-14 Score=144.09 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=129.7
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~~Lr~L~L~ 101 (829)
+.++.+++.+..+|... .++|++|++++|. +..++..+|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNS----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCc----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 46777888888887654 4588999999988 5677777778899999999999988887765 5788999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccc
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWD 178 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 178 (829)
+|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee--
Confidence 9988877 4578899999999999988888765 6889999999999876 66777665788899999999888654
Q ss_pred cccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 179 KVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 179 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
..+++|+.|++..+..
T Consensus 162 -------------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHC
T ss_pred -------------cCCCCHHHHHHHHHhC
Confidence 1344666666666554
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=149.15 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=136.0
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL 89 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l 89 (829)
+...+.+..++++++|++++|.+..++....+++|++|++++|. +..++. |.++++|++|++++|+++.+|...
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~----i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ----ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC----CCCCGG--GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc----cCCChh--hccCCCCCEEECCCCccCCcCccc
Confidence 33444455678999999999999999865589999999999999 677776 699999999999999999987644
Q ss_pred cCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEE
Q 003328 90 GRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELY 169 (829)
Q Consensus 90 ~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 169 (829)
. .+|++|++++|.++.+..++++++|++|++++|.++.+| .++++++|++|++++|. +..++. +..+++|++|+
T Consensus 105 ~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~ 178 (263)
T 1xeu_A 105 S--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWID 178 (263)
T ss_dssp C--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEE
T ss_pred c--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEe
Confidence 4 999999999999999988999999999999999999987 68999999999999987 666643 89999999999
Q ss_pred ccCCccc
Q 003328 170 MGDSFSQ 176 (829)
Q Consensus 170 l~~~~~~ 176 (829)
+++|.+.
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 9998765
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.9e-14 Score=140.93 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=118.4
Q ss_pred CCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCCCCc
Q 003328 18 IRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ 96 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr 96 (829)
.++++++|++++|.+..++....+++|++|++++|. +..++ . +..+++|++|++++|.++. .|..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~----~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH----ATNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC----CSCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC----CCcch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456888899988888888854588889999998886 45554 2 5788889999998888875 677788888899
Q ss_pred EEEccccCCCC--cccccCCCCCcEEEccCCC-CccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 97 TLCLDWCQLED--VAAIGQLKKLEILSFRGSD-IKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 97 ~L~L~~~~l~~--l~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
+|++++|.+.. +..++++++|++|++++|. ++.+| .++++++|++|++++|. +..++. +..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCc
Confidence 99999888875 2778888889999998887 88887 68888889999988877 666763 788888999988887
Q ss_pred ccc
Q 003328 174 FSQ 176 (829)
Q Consensus 174 ~~~ 176 (829)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2.3e-14 Score=154.18 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=89.9
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-Cch-hhcCCCCCcE-EE
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPS-SLGRLINLQT-LC 99 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~-~l~~l~~Lr~-L~ 99 (829)
++++-++++++++|..+ .+++++|++++|. +..+|...|.++++|++|+|++|.+.+ +|. .+.++++++. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCC----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCc----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45666777777777654 3467777777777 667776666777777777777777644 443 3566666654 44
Q ss_pred ccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCC-CcccEEEccCCc
Q 003328 100 LDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKF-SRLEELYMGDSF 174 (829)
Q Consensus 100 L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L-~~L~~L~l~~~~ 174 (829)
+.++++..+ ..|..+++|++|++++|.++.+|.. +....++.+|++.++..+..++...+..+ ..++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 445566665 5567777777777777777666542 34455566666665555555554323333 234445554443
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=155.36 Aligned_cols=195 Identities=18% Similarity=0.104 Sum_probs=151.4
Q ss_pred CCCcEEEcCCCCCCC-CCCc---cCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCC
Q 003328 20 KDPIAISLPQRDIQE-LPER---LQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLIN 94 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~ 94 (829)
+++++|++++|.+.. .|.. ..+++|++|++++|........++...+..+++|++|++++|.+..++ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 569999999999884 4433 468999999999999321111122223457999999999999998855 67889999
Q ss_pred CcEEEccccCCCC---c---ccccCCCCCcEEEccCCCCccchhh----hcCCCCCCEEeccCCCCCCcc-ChhhhcCC-
Q 003328 95 LQTLCLDWCQLED---V---AAIGQLKKLEILSFRGSDIKQLPLE----IGQLTRLQLLDLSNCSSLVVI-APNVISKF- 162 (829)
Q Consensus 95 Lr~L~L~~~~l~~---l---~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L- 162 (829)
|++|++++|++.. + ..++++++|++|++++|.++.+|.. ++++++|++|++++|. +... |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 9999999998753 3 2347899999999999999877653 5789999999999998 5554 665 6666
Q ss_pred --CcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCccccccccEEEEEEc
Q 003328 163 --SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDWVSVELQRYKICIG 227 (829)
Q Consensus 163 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 227 (829)
++|++|++++|.+. .. ...+ .++|+.|++++|.+..+|....+++|+.|+++++
T Consensus 249 ~~~~L~~L~Ls~N~l~------~l---p~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE------QV---PKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCC------SC---CSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCC------ch---hhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 69999999999875 11 1222 2689999999999988876667788998887543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=142.60 Aligned_cols=148 Identities=15% Similarity=0.233 Sum_probs=121.5
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCccccccc-chhhhcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQI-SDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCL 100 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~l-p~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L 100 (829)
++++++++.+.++|..+ .+.+++|++++|. +..+ +..+|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 58899999999888755 3467899999998 5555 44557899999999999999988655 6889999999999
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
++|.++.+ ..++++++|++|++++|.++.+ |..++++++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998877 5688999999999999998877 5678899999999999987 66664444888899999998888765
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=1.1e-14 Score=155.79 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCcEEEcCCCCCCCCCCcc-CC--CCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC--CchhhcCCCCC
Q 003328 21 DPIAISLPQRDIQELPERL-QC--PNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINL 95 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~l~~L 95 (829)
.+++++++++.+. +..+ .+ +++++|++.+|. +...+..+ .++++|++|++++|.++. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~----l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF----MDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE----ECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc----ccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4555555555443 1111 22 455555555554 22222222 345555555555555442 44455555555
Q ss_pred cEEEccccCCCC-c-ccccCCCCCcEEEccCC-CCc--cchhhhcCCCCCCEEeccCCCCCCc--cChhhhcCCC-cccE
Q 003328 96 QTLCLDWCQLED-V-AAIGQLKKLEILSFRGS-DIK--QLPLEIGQLTRLQLLDLSNCSSLVV--IAPNVISKFS-RLEE 167 (829)
Q Consensus 96 r~L~L~~~~l~~-l-~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~-~L~~ 167 (829)
++|++++|.+.. . ..++++++|++|++++| .++ .+|..+.++++|++|++++|..+.. ++.. +..++ +|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCE
Confidence 555555555442 2 44555555555555555 444 2444455555555555555522332 2222 44555 5555
Q ss_pred EEccCC
Q 003328 168 LYMGDS 173 (829)
Q Consensus 168 L~l~~~ 173 (829)
|++++|
T Consensus 200 L~l~~~ 205 (336)
T 2ast_B 200 LNLSGY 205 (336)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 555555
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=6.2e-14 Score=150.71 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=149.4
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccE-EEecCCCCCCC
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKV-LSLIGIHFSSL 85 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~-L~L~~~~i~~l 85 (829)
++..+|. +.++++++|++++|.|+.+|.. + ++++|++|++++|. ....+|..+|.++++++. +.+.+++++.+
T Consensus 20 ~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~---i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 20 KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND---VLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT---TCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC---CCCccChhHhhcchhhhhhhcccCCccccc
Confidence 3444442 3467999999999999999874 3 89999999999999 346678777899988775 56677889986
Q ss_pred -chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCC-CCccchhh-hcCC-CCCCEEeccCCCCCCccChhhh
Q 003328 86 -PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGS-DIKQLPLE-IGQL-TRLQLLDLSNCSSLVVIAPNVI 159 (829)
Q Consensus 86 -p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~L-~~L~~L~l~~~~~l~~lp~~~l 159 (829)
|..+..+++|++|++++|++..+ ..+....++.+|++.++ .+..+|.. +..+ ..+++|++++|. ++.++.+ +
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~ 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-A 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-S
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-h
Confidence 46689999999999999999877 44556677889999764 78888754 4555 478999999987 8889887 6
Q ss_pred cCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCc
Q 003328 160 SKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQD 213 (829)
Q Consensus 160 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 213 (829)
....+|++|++.++... +. .....++++++|+.|+++.|.+..+|..
T Consensus 174 f~~~~L~~l~l~~~n~l-----~~--i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNL-----EE--LPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp STTEEEEEEECTTCTTC-----CC--CCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred ccccchhHHhhccCCcc-----cC--CCHHHhccCcccchhhcCCCCcCccChh
Confidence 77889999999864332 11 1123356788999999999998877764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=6.1e-14 Score=160.68 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=140.8
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS 88 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~ 88 (829)
++...+.+..+++|++|++++|.+..+++...+++|+.|++++|. +..+|. +..+++|++|+|++|.+..++ .
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~----l~~l~~--l~~l~~L~~L~Ls~N~l~~l~-~ 126 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK----IKDLSS--LKDLKKLKSLSLEHNGISDIN-G 126 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC----CCCCTT--STTCTTCCEEECTTSCCCCCG-G
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC----CCCChh--hccCCCCCEEEecCCCCCCCc-c
Confidence 455566777889999999999999998886699999999999998 566663 689999999999999999885 5
Q ss_pred hcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEE
Q 003328 89 LGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEEL 168 (829)
Q Consensus 89 l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 168 (829)
+..+++|++|+|++|.+..+..++.+.+|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l~~L~~L 202 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVL 202 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTTCSEE
T ss_pred ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--HccCCCCCEE
Confidence 89999999999999999988889999999999999999998876 9999999999999987 777764 8999999999
Q ss_pred EccCCccc
Q 003328 169 YMGDSFSQ 176 (829)
Q Consensus 169 ~l~~~~~~ 176 (829)
++++|.+.
T Consensus 203 ~L~~N~l~ 210 (605)
T 1m9s_A 203 ELFSQECL 210 (605)
T ss_dssp ECCSEEEE
T ss_pred EccCCcCc
Confidence 99998765
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=8.4e-15 Score=160.02 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=39.3
Q ss_pred cCCCCccEEEecCCCCCC-----CchhhcCCCCCcEEEccccCCCC-----c-ccccCC---------CCCcEEEccCCC
Q 003328 67 EGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED-----V-AAIGQL---------KKLEILSFRGSD 126 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~i~~L---------~~L~~L~l~~~~ 126 (829)
..+++|++|++++|.++. +|..+..+++|++|++++|.+.. + ..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555555555555443 44445555555555555555431 1 122222 455555555554
Q ss_pred Cc--cch---hhhcCCCCCCEEeccCCC
Q 003328 127 IK--QLP---LEIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 127 l~--~lp---~~i~~L~~L~~L~l~~~~ 149 (829)
++ .+| ..+.++++|++|++++|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 43 223 234445555555555543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=4.1e-14 Score=139.97 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=128.4
Q ss_pred CCCCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLI 93 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~ 93 (829)
..++++++|++++|.+..++... .+++|++|++++|. +..+|...|.++++|++|++++|.++.+|.. +..++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 34679999999999999888643 89999999999998 6788887789999999999999999987765 68999
Q ss_pred CCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEc
Q 003328 94 NLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 94 ~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 170 (829)
+|++|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++|++|++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~ 172 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSE 172 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHH
Confidence 999999999999987 4589999999999999999988776 78999999999999852 355677888888
Q ss_pred cCCccc
Q 003328 171 GDSFSQ 176 (829)
Q Consensus 171 ~~~~~~ 176 (829)
..+.+.
T Consensus 173 ~~n~~~ 178 (208)
T 2o6s_A 173 WINKHS 178 (208)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 777654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=6.4e-14 Score=151.27 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=138.8
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhc-CCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFE-GTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCL 100 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~-~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L 100 (829)
++++++++++..+|..+ .+.+++|++++|. +..++...|. ++++|++|++++|.++.++ ..+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 68899999999998755 3468999999998 6777777676 8999999999999998866 46889999999999
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCCCCccChhhh---cCCCcccEEEccCCc
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSSLVVIAPNVI---SKFSRLEELYMGDSF 174 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~L~~L~~L~l~~~~ 174 (829)
++|+++.+ ..|.++.+|++|++++|.++.+ |..+.++++|++|++++|. +..+|...+ ..+++|++|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999877 5689999999999999999877 5678999999999999987 788887744 579999999999987
Q ss_pred cccccccCCCccchhhhcCCCC--CcEEEeecCCCC
Q 003328 175 SQWDKVEGGSNASLAELKGLSK--LTTLEIHVWDAQ 208 (829)
Q Consensus 175 ~~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~ 208 (829)
+. ......+..++. ++.|++.+|...
T Consensus 175 l~--------~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LK--------KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC--------CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CC--------ccCHHHhhhccHhhcceEEecCCCcc
Confidence 75 222344555554 477888887764
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=6.7e-14 Score=151.11 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=80.7
Q ss_pred cEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hc-CCCCCcEEEccccCCCCc--ccccCCCCCcEE
Q 003328 45 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LG-RLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 120 (829)
Q Consensus 45 r~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~-~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 120 (829)
++++++++. +..+|..+ ...+++|+|++|.++.++.. +. .+++|++|+|++|.+..+ ..|.++.+|++|
T Consensus 21 ~~l~c~~~~----l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQ----LPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSC----CSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCC----cCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 455555555 44555432 23456666666666554433 33 566666666666666555 345666666666
Q ss_pred EccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcE
Q 003328 121 SFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 199 (829)
Q Consensus 121 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 199 (829)
++++|.++.+|. .+.++++|++|++++|. +..++...+..+++|++|++++|.+. .-....+..+..+++|+.
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~-----~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-----RFPVELIKDGNKLPKLML 167 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC-----SCCGGGTC----CTTCCE
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC-----eeCHHHhcCcccCCcCCE
Confidence 666666665543 35566666666666655 44443333556666666666665543 111111111244556666
Q ss_pred EEeecCCCCCcC
Q 003328 200 LEIHVWDAQILP 211 (829)
Q Consensus 200 L~l~~~~~~~~~ 211 (829)
|++++|.+..++
T Consensus 168 L~L~~N~l~~l~ 179 (361)
T 2xot_A 168 LDLSSNKLKKLP 179 (361)
T ss_dssp EECCSSCCCCCC
T ss_pred EECCCCCCCccC
Confidence 666666655554
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.3e-14 Score=157.02 Aligned_cols=185 Identities=13% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCCCCcEEEcCCCCCCCCCC-----cc-CCC-CCcEEEeecCCCcccccccchhhhcCC-----CCccEEEecCCCCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPE-----RL-QCP-NLQLFLLITKGIAPVSMQISDLFFEGT-----EELKVLSLIGIHFSS 84 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~~~~~lp~~~~~~l-----~~Lr~L~L~~~~i~~ 84 (829)
..++++++|++++|.+...+. .+ .++ +|++|++++|. +.......|..+ ++|++|++++|.++.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC----GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC----CCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 344568888888887776653 22 566 78888888777 333322223333 778888888887764
Q ss_pred Cc-hh----hcCC-CCCcEEEccccCCCCc--c----cccCC-CCCcEEEccCCCCc-----cchhhhcCCC-CCCEEec
Q 003328 85 LP-SS----LGRL-INLQTLCLDWCQLEDV--A----AIGQL-KKLEILSFRGSDIK-----QLPLEIGQLT-RLQLLDL 145 (829)
Q Consensus 85 lp-~~----l~~l-~~Lr~L~L~~~~l~~l--~----~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l 145 (829)
.+ .. +..+ ++|++|++++|.++.. . .+..+ .+|++|++++|.++ .++..+..+. +|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 32 22 4444 6788888888876643 2 23443 57888888887766 4455566665 7888888
Q ss_pred cCCCCCCccChhh----hcCC-CcccEEEccCCccccccccCCCccchhhhcC-CCCCcEEEeecCCCCCc
Q 003328 146 SNCSSLVVIAPNV----ISKF-SRLEELYMGDSFSQWDKVEGGSNASLAELKG-LSKLTTLEIHVWDAQIL 210 (829)
Q Consensus 146 ~~~~~l~~lp~~~----l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-l~~L~~L~l~~~~~~~~ 210 (829)
++|. ++..+... +... ++|++|++++|.+.. .........+.. .++|+.|++++|.+...
T Consensus 175 s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 175 RGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred cCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 8776 54444321 3344 578888887776650 000112223333 34777777777766543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2.7e-13 Score=153.51 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=146.5
Q ss_pred CCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 003328 20 KDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 99 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~ 99 (829)
.++++|++++|.+..+|..+ .++|++|++++|. +..+| ..+++|++|++++|.++.+|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~----l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNA----LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC----CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCC----Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 38999999999999998765 4789999999999 56788 357999999999999999998 665 999999
Q ss_pred ccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCcccccc
Q 003328 100 LDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDK 179 (829)
Q Consensus 100 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 179 (829)
+++|.++.+.. .+.+|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|++|++++|.+.
T Consensus 127 Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~--- 193 (571)
T 3cvr_A 127 VDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE--- 193 (571)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS---
T ss_pred CCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC---
Confidence 99999998844 78999999999999999987 68999999999987 777887 55 89999999999775
Q ss_pred ccCCCccchhhh-cCCCCCcEEEeecCCCCCcCCcc-ccccccEEEEEEcc
Q 003328 180 VEGGSNASLAEL-KGLSKLTTLEIHVWDAQILPQDW-VSVELQRYKICIGE 228 (829)
Q Consensus 180 ~~~~~~~~~~~L-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 228 (829)
..+.....+ .....|+.|++++|.+..+|..+ .+++|+.|+++.+.
T Consensus 194 ---~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 ---SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---SCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ---chhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 111100011 11123399999999999998854 68889998876443
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=2.6e-14 Score=153.01 Aligned_cols=195 Identities=18% Similarity=0.262 Sum_probs=155.8
Q ss_pred CCCcEEEcCCCCCCCCCCc-cCCCCCcEEEeecCCCcccccc-cchhhhcCCCCccEEEecCCCCCC-CchhhcCCCCCc
Q 003328 20 KDPIAISLPQRDIQELPER-LQCPNLQLFLLITKGIAPVSMQ-ISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ 96 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~-lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr 96 (829)
+++++++++++.+...+.. ..+++|++|++++|. .... ++. ++..+++|++|++++|.++. .|..++.+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~---l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV---IEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE---ECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC---cCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 7899999999988865544 489999999999998 2333 554 46899999999999999884 788899999999
Q ss_pred EEEcccc-CCCC--c-ccccCCCCCcEEEccCC-CCcc--chhhhcCCC-CCCEEeccCCC-CC--CccChhhhcCCCcc
Q 003328 97 TLCLDWC-QLED--V-AAIGQLKKLEILSFRGS-DIKQ--LPLEIGQLT-RLQLLDLSNCS-SL--VVIAPNVISKFSRL 165 (829)
Q Consensus 97 ~L~L~~~-~l~~--l-~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~lp~~~l~~L~~L 165 (829)
+|++++| .++. + ..+.++++|++|++++| .++. ++..+.+++ +|++|++++|. .+ ..++.. ++++++|
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L 224 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNL 224 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTC
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCC
Confidence 9999999 6773 5 66889999999999999 8884 788899999 99999999985 23 345554 7889999
Q ss_pred cEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCC----ccccccccEEEEEEc
Q 003328 166 EELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQ----DWVSVELQRYKICIG 227 (829)
Q Consensus 166 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~ 227 (829)
++|++++|... ....+..+..+++|+.|+++++.. ..+. ...+++|+.|++.++
T Consensus 225 ~~L~l~~~~~l-------~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 225 VHLDLSDSVML-------KNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SEEECTTCTTC-------CGGGGGGGGGCTTCCEEECTTCTT-CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEEeCCCCCcC-------CHHHHHHHhCCCCCCEeeCCCCCC-CCHHHHHHHhcCCCCCEEeccCc
Confidence 99999999732 134556777889999999998851 1111 236789999988644
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.8e-13 Score=130.16 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=92.8
Q ss_pred CCCCCcEEEcCCCCCC--CCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCC
Q 003328 18 IRKDPIAISLPQRDIQ--ELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLI 93 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~ 93 (829)
.++++++|++++|.+. .+|..+ .+++|++|++++|. +..+ . .|..+++|++|++++|.++. +|..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----CCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----CCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3467788888888777 677664 67777788887777 3444 2 25777777777777777776 666666677
Q ss_pred CCcEEEccccCCCCc---ccccCCCCCcEEEccCCCCccchh----hhcCCCCCCEEeccCCCCCCccCh
Q 003328 94 NLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQLPL----EIGQLTRLQLLDLSNCSSLVVIAP 156 (829)
Q Consensus 94 ~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~ 156 (829)
+|++|++++|.++.+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. ...+|.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 777777777777654 467777777777777777776665 57777777777777765 444543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=5.6e-13 Score=133.74 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=116.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCC-cc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCC
Q 003328 17 TIRKDPIAISLPQRDIQELPE-RL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLI 93 (829)
Q Consensus 17 ~~~~~l~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~ 93 (829)
..++++++|++++|.+..+++ .+ .+++|++|++++|. +..+|...|.++++|++|++++|.++.+|.. +..++
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 345799999999999998854 34 89999999999999 6888888789999999999999999998765 68999
Q ss_pred CCcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCC
Q 003328 94 NLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 94 ~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 149 (829)
+|++|++++|.++.+ ..+.++.+|++|++++|.++.+|. .+.++++|++|++.+|.
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999999999999 889999999999999999998875 48899999999999987
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=4.9e-13 Score=133.21 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=117.7
Q ss_pred ccCCccccCCCCCCcEEEcCCCCCCCCCCc-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 9 DVEKKMEETIRKDPIAISLPQRDIQELPER-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 9 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
++..+|. ..++++++|++++|.+..++.. + .+++|++|++++|. +..++...|.++++|++|++++|.++.+|
T Consensus 22 ~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 22 GLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp CCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC----CCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----CCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 3444442 3457999999999999988863 3 89999999999999 56665555799999999999999999988
Q ss_pred hh-hcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCC
Q 003328 87 SS-LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 87 ~~-l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 149 (829)
.. +..+++|++|+|++|.++.+ ..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 76 58899999999999999977 7899999999999999999988764 8899999999999986
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=7.8e-13 Score=131.73 Aligned_cols=136 Identities=20% Similarity=0.249 Sum_probs=117.8
Q ss_pred cCCccccCCCCCCcEEEcCCCCCCCCCC-c-c-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc
Q 003328 10 VEKKMEETIRKDPIAISLPQRDIQELPE-R-L-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP 86 (829)
Q Consensus 10 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~-~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp 86 (829)
+..+|. ..++.+++|++++|.+..+++ . + .+++|++|++++|. +..++...|.++++|++|++++|.++.+|
T Consensus 23 l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 23 LNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----ITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----CCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 334442 345688999999999998843 2 3 89999999999999 67777766899999999999999999876
Q ss_pred h-hhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCCC
Q 003328 87 S-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCSS 150 (829)
Q Consensus 87 ~-~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 150 (829)
. .+..+++|++|++++|.+..+ ..+.++.+|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5 488999999999999999977 7899999999999999999988 77899999999999999873
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.2e-13 Score=128.44 Aligned_cols=136 Identities=23% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCccEEEecCCCCC--CCchhhcCCCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCcc-chhhhcCCCCCCEEecc
Q 003328 70 EELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQ-LPLEIGQLTRLQLLDLS 146 (829)
Q Consensus 70 ~~Lr~L~L~~~~i~--~lp~~l~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~ 146 (829)
++|++|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.++. +|..++++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45555555555555 4555555555555555555555544455555555555555555554 44444455555555555
Q ss_pred CCCCCCccCh-hhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcC
Q 003328 147 NCSSLVVIAP-NVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILP 211 (829)
Q Consensus 147 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 211 (829)
+|. +..++. ..++.+++|++|++++|.+. .........+..+++|+.|++..+....+|
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVT-----NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-----TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-----chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 554 444331 11555555555555555443 111111123445555666655555554444
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.2e-12 Score=148.18 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=134.7
Q ss_pred CCCCcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEE
Q 003328 19 RKDPIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 98 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L 98 (829)
.+++++|++++|.+..+| ..+++|++|++++|. +..+|. + .+ +|++|++++|.++.+|. .+++|++|
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~----l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNR----LSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC----CSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCC----CCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEE
Confidence 578999999999999999 457899999999999 566887 3 44 99999999999999988 78999999
Q ss_pred EccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcc-------cEEEcc
Q 003328 99 CLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRL-------EELYMG 171 (829)
Q Consensus 99 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L-------~~L~l~ 171 (829)
++++|.++.+.. .+++|++|++++|.++.+|. ++ ++|++|++++|. +..+|. +.. +| ++|+++
T Consensus 146 ~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 146 NADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp ECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECC
T ss_pred eCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecC
Confidence 999999998844 68899999999999999998 76 999999999987 778886 443 66 999999
Q ss_pred CCccccccccCCCccchhhhcCCCCCcEEEeecCCCCC
Q 003328 172 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQI 209 (829)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 209 (829)
+|.+. .....+..+++|+.|++++|.+..
T Consensus 216 ~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 216 ENRIT---------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC---------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCcce---------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99875 233455668899999999998753
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=5e-13 Score=124.27 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=77.7
Q ss_pred CCCCcEEEcCCCCCC--CCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-CchhhcCCCC
Q 003328 19 RKDPIAISLPQRDIQ--ELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLIN 94 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~ 94 (829)
++++++|++++|.+. .+|..+ .+++|++|++++|. +..+ . .|.++++|++|++++|.++. +|..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----CCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----CCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 356777777777776 566554 66677777777666 3344 2 24666777777777777666 6665566666
Q ss_pred CcEEEccccCCCCc---ccccCCCCCcEEEccCCCCccchh----hhcCCCCCCEEecc
Q 003328 95 LQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSDIKQLPL----EIGQLTRLQLLDLS 146 (829)
Q Consensus 95 Lr~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~ 146 (829)
|++|++++|.++.+ ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777766666653 556666666666666666665554 45666666666554
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=1.4e-13 Score=148.88 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=121.9
Q ss_pred EEEcCCCCCCCC-CCcc-CCCCCcEEEeecCCCcccccccch----hhhcCCC-CccEEEecCCCCCCC-chhhcCC---
Q 003328 24 AISLPQRDIQEL-PERL-QCPNLQLFLLITKGIAPVSMQISD----LFFEGTE-ELKVLSLIGIHFSSL-PSSLGRL--- 92 (829)
Q Consensus 24 ~L~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~l~~l--- 92 (829)
.+.++.+.+... |... ..++|++|++++|. +...+. ..|.+++ +|++|++++|.++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 356777777743 3334 34459999999998 556554 4568888 899999999988763 5555554
Q ss_pred --CCCcEEEccccCCCCc--c----cccCC-CCCcEEEccCCCCccchh-----hhcCC-CCCCEEeccCCCCCCc----
Q 003328 93 --INLQTLCLDWCQLEDV--A----AIGQL-KKLEILSFRGSDIKQLPL-----EIGQL-TRLQLLDLSNCSSLVV---- 153 (829)
Q Consensus 93 --~~Lr~L~L~~~~l~~l--~----~i~~L-~~L~~L~l~~~~l~~lp~-----~i~~L-~~L~~L~l~~~~~l~~---- 153 (829)
++|++|++++|.++.. . .+..+ .+|++|++++|.++..+. .+..+ ++|++|++++|. ++.
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~ 156 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD 156 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence 8999999999988743 2 35555 899999999998885543 24443 699999999987 553
Q ss_pred -cChhhhcCCC-cccEEEccCCccccccccCCCccch-hhhcCC-CCCcEEEeecCCCCC
Q 003328 154 -IAPNVISKFS-RLEELYMGDSFSQWDKVEGGSNASL-AELKGL-SKLTTLEIHVWDAQI 209 (829)
Q Consensus 154 -lp~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~l-~~L~~L~l~~~~~~~ 209 (829)
++.. +..+. +|++|++++|.+. +.....+ ..+... ++|+.|++++|.+..
T Consensus 157 ~l~~~-l~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 157 ELIQI-LAAIPANVNSLNLRGNNLA-----SKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHH-HHTSCTTCCEEECTTSCGG-----GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHH-HhcCCccccEeeecCCCCc-----hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2332 45555 8999999998775 1111122 234555 489999999887654
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=6e-13 Score=123.75 Aligned_cols=123 Identities=25% Similarity=0.352 Sum_probs=56.1
Q ss_pred CCCcEEEeecCCCcccc-cccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCC-c-ccccCCCCCc
Q 003328 42 PNLQLFLLITKGIAPVS-MQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLE 118 (829)
Q Consensus 42 ~~Lr~L~l~~~~~~~~~-~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~ 118 (829)
++|++|++++|. .. ..+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++++++|+
T Consensus 17 ~~l~~L~l~~n~---l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSR---SNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCB---CBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCc---CChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 345555555554 11 134432 24455555555555554444 344445555555555554444 3 3333445555
Q ss_pred EEEccCCCCccch--hhhcCCCCCCEEeccCCCCCCccCh---hhhcCCCcccEEEc
Q 003328 119 ILSFRGSDIKQLP--LEIGQLTRLQLLDLSNCSSLVVIAP---NVISKFSRLEELYM 170 (829)
Q Consensus 119 ~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l 170 (829)
+|++++|.++.+| ..++++++|++|++++|. +..++. ..++.+++|++|++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 5555555444433 344445555555555443 333333 22444444444443
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=9.1e-13 Score=126.31 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCCCcEEEcCCCCCCCCCCccCC-CCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhh-cCCCCC
Q 003328 18 IRKDPIAISLPQRDIQELPERLQC-PNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINL 95 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l-~~l~~L 95 (829)
.+.++++|++++|.+..++....+ ++|++|++++|. +..++ . |.++++|++|++++|.++.+|..+ ..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~----l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE----IRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC----CCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC----CCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455666666666666666544433 366666666666 33342 2 456666666666666666655443 566666
Q ss_pred cEEEccccCCCCc-c--cccCCCCCcEEEccCCCCccchhh----hcCCCCCCEEeccCCC
Q 003328 96 QTLCLDWCQLEDV-A--AIGQLKKLEILSFRGSDIKQLPLE----IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 96 r~L~L~~~~l~~l-~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 149 (829)
++|++++|.+..+ . .++.+++|++|++++|.+..+|.. ++.+++|++|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666666666554 2 455666666666666666555553 5555566666555544
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=4.2e-13 Score=146.52 Aligned_cols=206 Identities=18% Similarity=0.237 Sum_probs=152.2
Q ss_pred cCCCCCCcEEEcCCCCCCCC----CCc--------cCCCCCcEEEeecCCCccccc-ccchhhhcCCCCccEEEecCCCC
Q 003328 16 ETIRKDPIAISLPQRDIQEL----PER--------LQCPNLQLFLLITKGIAPVSM-QISDLFFEGTEELKVLSLIGIHF 82 (829)
Q Consensus 16 ~~~~~~l~~L~l~~~~~~~l----~~~--------~~~~~Lr~L~l~~~~~~~~~~-~lp~~~~~~l~~Lr~L~L~~~~i 82 (829)
+..+++|++|++++|.+..+ |.. ..+++|++|++++|....... .+|.. +.++++|++|++++|.+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCC
Confidence 45678999999999866643 322 268999999999998321100 25555 58899999999999998
Q ss_pred CC-----CchhhcCC---------CCCcEEEccccCCC--Cc----ccccCCCCCcEEEccCCCCc------cchhhhcC
Q 003328 83 SS-----LPSSLGRL---------INLQTLCLDWCQLE--DV----AAIGQLKKLEILSFRGSDIK------QLPLEIGQ 136 (829)
Q Consensus 83 ~~-----lp~~l~~l---------~~Lr~L~L~~~~l~--~l----~~i~~L~~L~~L~l~~~~l~------~lp~~i~~ 136 (829)
+. ++..+..+ ++|++|++++|++. .+ ..+.++++|++|++++|.++ -+|..+.+
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 63 44445555 89999999999886 22 36778999999999999887 23447889
Q ss_pred CCCCCEEeccCCCCC----CccChhhhcCCCcccEEEccCCccccccccCCCccchhhh--cCCCCCcEEEeecCCCCC-
Q 003328 137 LTRLQLLDLSNCSSL----VVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAEL--KGLSKLTTLEIHVWDAQI- 209 (829)
Q Consensus 137 L~~L~~L~l~~~~~l----~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~l~~L~~L~l~~~~~~~- 209 (829)
+++|++|++++|..- ..+|.. +.++++|++|++++|.+... ........+ +.+++|+.|++++|.+..
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR----GAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH----HHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchh----hHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 999999999998831 556665 88999999999999976510 001123444 348899999999999876
Q ss_pred ----cCCcc--ccccccEEEEEEc
Q 003328 210 ----LPQDW--VSVELQRYKICIG 227 (829)
Q Consensus 210 ----~~~~~--~~~~L~~L~l~~~ 227 (829)
++..+ .+++|+.|++.++
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHHHhcCCCceEEEccCC
Confidence 55554 3689999988643
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.1e-12 Score=123.53 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=47.9
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccC
Q 003328 71 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSN 147 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 147 (829)
+|++|++++|.++.+|..+..+++|++|++++|.++.+ ..|.++.+|++|++++|.++.+|. .++++++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 34444444444444444444444444444444444433 234444444455554444444432 244455555555554
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCcc
Q 003328 148 CSSLVVIAPNVISKFSRLEELYMGDSFS 175 (829)
Q Consensus 148 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 175 (829)
|. +..+|.+.+..+++|++|++++|.+
T Consensus 112 N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 112 ND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 43 4444443344455555555554433
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=7.9e-13 Score=155.46 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=100.4
Q ss_pred CCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEE
Q 003328 20 KDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 98 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L 98 (829)
+++++|++.++.+...+... ....|+.+.+...........++...|..+++|++|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 56899999999888766443 44444444433321111112245555789999999999999999999999999999999
Q ss_pred EccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 99 CLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 99 ~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+|++|.++.+ ..|++|.+|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999988 88999999999999999999999999999999999999986 7899988 899999999999999775
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=4.3e-12 Score=123.38 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=90.6
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccch-hhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISD-LFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 100 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~-~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L 100 (829)
++++++++++.++|..+. +++++|++++|. +..++. .+|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNE----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCC----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCc----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 678888888888876542 378888888887 555554 3457888888888888888774 667778888888888
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccc-hhhhcCCCCCCEEeccCCC
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQL-PLEIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 149 (829)
++|+++.+ ..+.++++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88887766 4577788888888888877755 5567777777777777766
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=120.71 Aligned_cols=121 Identities=21% Similarity=0.344 Sum_probs=109.0
Q ss_pred cEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEcc
Q 003328 23 IAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD 101 (829)
Q Consensus 23 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~ 101 (829)
++++++++.+.++|..+ .++|++|++++|. +..+|.. |.++++|++|++++|.++.++ ..+..+++|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~----i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ----FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC----CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc----CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 68999999999999765 3689999999999 6788855 699999999999999999876 468999999999999
Q ss_pred ccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCC
Q 003328 102 WCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 102 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 149 (829)
+|.++.+ ..|.++++|++|++++|.++.+|.. +..+++|++|++.+|.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9999988 5799999999999999999999875 8899999999999976
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3e-12 Score=122.67 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=59.1
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-cc-ccCCCCC
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AA-IGQLKKL 117 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~-i~~L~~L 117 (829)
++++|++|++++|. +..+|. +....++|++|++++|.++.+ ..+..+++|++|++++|.++.+ .. ++.+++|
T Consensus 17 ~~~~L~~L~l~~n~----l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYK----IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSC----CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCC----CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44455555555554 233332 112222555555555555444 3444555555555555555444 22 2455555
Q ss_pred cEEEccCCCCccchh--hhcCCCCCCEEeccCCCCCCccChh---hhcCCCcccEEEccCC
Q 003328 118 EILSFRGSDIKQLPL--EIGQLTRLQLLDLSNCSSLVVIAPN---VISKFSRLEELYMGDS 173 (829)
Q Consensus 118 ~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l~~~ 173 (829)
++|++++|.++.+|. .++++++|++|++++|. +..+|.. .++.+++|++|+++++
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 555555555554444 44455555555555544 3333332 2444444555444444
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.4e-11 Score=118.03 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=83.4
Q ss_pred CcEEEcCCCCCCCCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEc
Q 003328 22 PIAISLPQRDIQELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCL 100 (829)
Q Consensus 22 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~~Lr~L~L 100 (829)
.+.++++++++..+|... .++|++|++++|. +..++...|.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCc----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 356777777777777443 3577777777777 5566665567777777777777777776544 467777777777
Q ss_pred cccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCC
Q 003328 101 DWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 101 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 149 (829)
++|.++.+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77776665 3456677777777777776666654 3556667777666665
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=5.8e-12 Score=122.50 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=86.2
Q ss_pred cEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh--hcCCCCCcEEEccccCCCCc--ccccCCCCCcEE
Q 003328 45 QLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS--LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 120 (829)
Q Consensus 45 r~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~--l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 120 (829)
++++++++. +..+|..++ .+|++|++++|.++.++.. +..+++|++|++++|.++.+ ..++++.+|++|
T Consensus 11 ~~l~~s~~~----l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRG----LKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSC----CSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCC----cCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 677777777 566776542 3777788887777776643 67777788888877777766 567777777777
Q ss_pred EccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 121 SFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 121 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
++++|.++.++.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7777777766544 6777777777777776 44443333677777777777776554
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=3.5e-12 Score=149.98 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=111.5
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCc
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLE 118 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~ 118 (829)
.+++|++|++++|. +..+|..+| ++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+ ..|++|.+|+
T Consensus 222 ~l~~L~~L~Ls~n~----l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ----IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSC----CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCC----CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 78999999999999 668998874 89999999999999999999999999999999999999988 8899999999
Q ss_pred EEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChhhhcCCCc-ccEEEccCCccc
Q 003328 119 ILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFSR-LEELYMGDSFSQ 176 (829)
Q Consensus 119 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~-L~~L~l~~~~~~ 176 (829)
+|+|++|.++.+|.+|++|++|++|++++|...+.+|.. ++.+.. +..+++++|.+.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 999999999999999999999999999999844444543 443321 223556666543
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=9.9e-11 Score=112.15 Aligned_cols=125 Identities=21% Similarity=0.325 Sum_probs=97.6
Q ss_pred CcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEccccCCCCc--ccccCCCCCcEE
Q 003328 44 LQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 120 (829)
Q Consensus 44 Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~-l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 120 (829)
.+.+++.++. +..+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|.++.+ ..++++.+|++|
T Consensus 9 ~~~l~~~~~~----l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKG----LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSC----CSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCC----CccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 4677887777 66777543 46888899988888887654 57888888888888888877 447888888888
Q ss_pred EccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 121 SFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 121 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
++++|.++.+|.. ++++++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 8888888877765 5788888888888876 67777764577888888888887654
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=5.2e-13 Score=130.77 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=80.7
Q ss_pred CCcEEEcCCC--CCCCCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 003328 21 DPIAISLPQR--DIQELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 97 (829)
Q Consensus 21 ~l~~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~ 97 (829)
.++...+.+. .++.+|..+ .+++|++|++++|. +..+| . +.++++|++|++++|.++.+|..+..+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~----l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE----ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC----Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 4455555543 344444444 66777777777776 44565 3 46677777777777777777766666677777
Q ss_pred EEccccCCCCcccccCCCCCcEEEccCCCCccchh--hhcCCCCCCEEeccCCC
Q 003328 98 LCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPL--EIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 98 L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 149 (829)
|++++|.++.+..++++++|++|++++|.++.+|. .++++++|++|++++|.
T Consensus 98 L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 77777777666556677777777777777766554 56677777777777665
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=4.3e-11 Score=136.24 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=105.2
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCC
Q 003328 71 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 149 (829)
.|++|++++|.++.+|. ++.+++|++|++++|.++.+ ..++++++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 59999999999999997 99999999999999999988 89999999999999999999999 89999999999999987
Q ss_pred CCCcc--ChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEe
Q 003328 150 SLVVI--APNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 202 (829)
Q Consensus 150 ~l~~l--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 202 (829)
+..+ |.. ++.+++|++|++++|.+. +..+....-...+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~-----~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLC-----QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGG-----GSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCC-----CCccHHHHHHHHCcccCccCC
Confidence 6666 666 999999999999999875 222222223344778888764
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=7.6e-11 Score=134.20 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=150.5
Q ss_pred CCCCCcEEEcCCCCCCCCCCcc-CCCCCcEEEeecCCCc----------ccccccchhhhcCCCCccEEE-ecCCCCCCC
Q 003328 18 IRKDPIAISLPQRDIQELPERL-QCPNLQLFLLITKGIA----------PVSMQISDLFFEGTEELKVLS-LIGIHFSSL 85 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~----------~~~~~lp~~~~~~l~~Lr~L~-L~~~~i~~l 85 (829)
..+++++|++++|.++.+|..+ ++++|+.|++.+|... ......|. .++++++|+.|+ ++.+.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccchh
Confidence 4567888888888888888776 7888988888655200 01233343 458889999998 555544333
Q ss_pred ch------hhcC--CCCCcEEEccccCCCCcccccCCCCCcEEEccCCCCccchhhhcCCCCCCEEeccCCCCCCccChh
Q 003328 86 PS------SLGR--LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAPN 157 (829)
Q Consensus 86 p~------~l~~--l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 157 (829)
+. .+.. ...|++|++++|.++.++.++++++|++|++++|.++.+|..++++++|++|++++|. +..+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c
Confidence 21 1111 1359999999999999955999999999999999999999999999999999999987 77788 4
Q ss_pred hhcCCCcccEEEccCCccccccccCCCccc-hhhhcCCCCCcEEEeecCCCCCcCCcc-----ccccccEEE
Q 003328 158 VISKFSRLEELYMGDSFSQWDKVEGGSNAS-LAELKGLSKLTTLEIHVWDAQILPQDW-----VSVELQRYK 223 (829)
Q Consensus 158 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 223 (829)
++++++|++|++++|.+. ... +..++.+++|+.|++++|.+..++... .+++|+.|+
T Consensus 504 -l~~l~~L~~L~Ls~N~l~--------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQ--------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GTTCSSCCEEECCSSCCC--------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -cCCCCCCcEEECCCCCCC--------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999999999999875 122 567888999999999999988776643 367888774
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=8e-13 Score=129.41 Aligned_cols=153 Identities=21% Similarity=0.226 Sum_probs=113.0
Q ss_pred CCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc-ccccCCCCCcEEE
Q 003328 43 NLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILS 121 (829)
Q Consensus 43 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~ 121 (829)
.++...+.+.. +.+..+|.. |.++++|++|++++|.++.+| .+..+++|++|++++|.++.+ ..+..+++|++|+
T Consensus 24 ~l~~~~l~~~~--~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMI--PPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCC--TTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEecccc--CcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 45555555542 125566665 589999999999999999888 888999999999999998888 6677788999999
Q ss_pred ccCCCCccchhhhcCCCCCCEEeccCCCCCCccCh-hhhcCCCcccEEEccCCccccccccCC--CccchhhhcCCCCCc
Q 003328 122 FRGSDIKQLPLEIGQLTRLQLLDLSNCSSLVVIAP-NVISKFSRLEELYMGDSFSQWDKVEGG--SNASLAELKGLSKLT 198 (829)
Q Consensus 122 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~l~~L~ 198 (829)
+++|.++.+| .++++++|++|++++|. +..++. ..+..+++|++|++++|.+........ .......+..+++|+
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 9999999887 68889999999999887 666554 237889999999999887641000000 011122356677788
Q ss_pred EEE
Q 003328 199 TLE 201 (829)
Q Consensus 199 ~L~ 201 (829)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 775
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=4.2e-10 Score=107.13 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=43.3
Q ss_pred CCccEEEecCCCCCCC-chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEec
Q 003328 70 EELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDL 145 (829)
Q Consensus 70 ~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 145 (829)
++|++|++++|.++.+ |..+..+++|++|+|++|+++.+ ..+.++.+|++|++++|.++.+|.. ++++++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555555543 33445555555555555555544 2245555666666666655555544 555666666666
Q ss_pred cCCC
Q 003328 146 SNCS 149 (829)
Q Consensus 146 ~~~~ 149 (829)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=7.1e-10 Score=105.19 Aligned_cols=80 Identities=29% Similarity=0.375 Sum_probs=38.2
Q ss_pred CCccEEEecCCCCCCC-chhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEec
Q 003328 70 EELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDL 145 (829)
Q Consensus 70 ~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 145 (829)
++|++|++++|.++.+ |..+..+++|++|+|++|+++.+ ..+.++.+|++|++++|.++.+|.. ++++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 3444444444444443 23344444444444444444444 2244555555555555555555443 455555555555
Q ss_pred cCCC
Q 003328 146 SNCS 149 (829)
Q Consensus 146 ~~~~ 149 (829)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=5e-10 Score=106.61 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=90.2
Q ss_pred ccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCC
Q 003328 72 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNC 148 (829)
Q Consensus 72 Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 148 (829)
-++++++++.++.+|..+. .+|++|++++|.++.+ ..|+++++|++|++++|.++.+|.. ++++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998775 8999999999999987 6789999999999999999999876 589999999999998
Q ss_pred CCCCccChhhhcCCCcccEEEccCCccc
Q 003328 149 SSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 149 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
. +..+|.+.++.+++|++|++++|.+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 7 77888766788999999999988764
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=6e-10 Score=105.67 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=90.7
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccC
Q 003328 71 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSN 147 (829)
Q Consensus 71 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 147 (829)
..++++++++.++.+|..+. .+|++|++++|.++.+ ..|.++.+|++|++++|.++.+|.. +.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46789999999999998774 8999999999999987 6799999999999999999998876 58999999999999
Q ss_pred CCCCCccChhhhcCCCcccEEEccCCccc
Q 003328 148 CSSLVVIAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 148 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
|. +..++.+.+.++++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 87 77888765788999999999988764
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.7e-09 Score=114.80 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=131.1
Q ss_pred CCCCcEEEcCCCCCC--------------------CCCCcc--C--------CCCCcEEEeecCCCcccccccchhhhcC
Q 003328 19 RKDPIAISLPQRDIQ--------------------ELPERL--Q--------CPNLQLFLLITKGIAPVSMQISDLFFEG 68 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~~~~~~~~~~lp~~~~~~ 68 (829)
+++|++|++++|.+. .+|... . |++|+.+.+.+ . +..+++..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~----i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K----IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T----CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c----ccchhHHHhhc
Confidence 678999999988877 334322 5 78888888877 5 57788777888
Q ss_pred CCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCC----CCc--c--------------------------------
Q 003328 69 TEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQL----EDV--A-------------------------------- 109 (829)
Q Consensus 69 l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l----~~l--~-------------------------------- 109 (829)
+++|+.++++++.+..++ ..+..+.++.++.+..... ..+ .
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 888888888888776644 3456666666666544110 000 0
Q ss_pred -----------------cc-cCCCCCcEEEccCCCCccchhh-hcCCCCCCEEeccCCCCCCccChhhhcCCCccc-EEE
Q 003328 110 -----------------AI-GQLKKLEILSFRGSDIKQLPLE-IGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLE-ELY 169 (829)
Q Consensus 110 -----------------~i-~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~-~L~ 169 (829)
.+ ..+.+|+.+++++|.++.+|.. +.++++|+.+++.++ +..++.+.+..+.+|+ .++
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEE
Confidence 00 1267888999988888888765 788889999988875 7778877788888888 888
Q ss_pred ccCCccccccccCCCccchhhhcCCCCCcEEEeecCCCCCcCCcc--ccccccEEE
Q 003328 170 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDAQILPQDW--VSVELQRYK 223 (829)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 223 (829)
+... +. ......+.++++|+.+++..+.+..++... .+.+|+.++
T Consensus 281 l~~~-l~--------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPAS-VT--------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTT-CC--------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Eccc-ce--------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8763 21 123345667888888888888877776653 566777653
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=9.4e-10 Score=118.35 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=84.4
Q ss_pred CCCcEEEcCCCCCCCC-----CCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-----Cch
Q 003328 20 KDPIAISLPQRDIQEL-----PERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-----LPS 87 (829)
Q Consensus 20 ~~l~~L~l~~~~~~~l-----~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-----lp~ 87 (829)
+++++|++++|.+... ...+ ..++|++|++++|.. ...-...++..+++|++|+|++|.++. +..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL---DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC---CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC---CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4667777777766532 1111 235677777777662 121122233445567777777776653 222
Q ss_pred hh-cCCCCCcEEEccccCCCC-----c-ccccCCCCCcEEEccCCCCcc-----chhhhcCCCCCCEEeccCCCCCCccC
Q 003328 88 SL-GRLINLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRGSDIKQ-----LPLEIGQLTRLQLLDLSNCSSLVVIA 155 (829)
Q Consensus 88 ~l-~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp 155 (829)
.+ ...++|++|+|++|.++. + ..+...++|++|++++|.+.. ++..+...++|++|++++|. ++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 22 235667777777776653 2 344566667777777776652 34455666677777777665 43321
Q ss_pred hh----hhcCCCcccEEEccCCccc
Q 003328 156 PN----VISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 156 ~~----~l~~L~~L~~L~l~~~~~~ 176 (829)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1344566777777666554
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=2.7e-08 Score=105.58 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=130.0
Q ss_pred CCCCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCC-------CC------
Q 003328 19 RKDPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIH-------FS------ 83 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~-------i~------ 83 (829)
+++|+.|.+.. .+..++... .|++|+.+.+.+|. +..+++..|.++.++.++.+.... +.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~----i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT----APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS----CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC----ccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 78999999999 888888643 89999999999988 667888888888878777665411 10
Q ss_pred --------------CCchhh----------------------------cCCCCCcEEEccccCCCCc--ccccCCCCCcE
Q 003328 84 --------------SLPSSL----------------------------GRLINLQTLCLDWCQLEDV--AAIGQLKKLEI 119 (829)
Q Consensus 84 --------------~lp~~l----------------------------~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 119 (829)
.++..+ ..+++|+++++++|+++.+ ..|.++.+|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 011100 1378999999999999988 78999999999
Q ss_pred EEccCCCCccchhh-hcCCCCCC-EEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCCCC
Q 003328 120 LSFRGSDIKQLPLE-IGQLTRLQ-LLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKL 197 (829)
Q Consensus 120 L~l~~~~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L 197 (829)
+++.++ ++.++.. +.++.+|+ .+++.. .+..++.+.+..+.+|+.+++..+.+. .-....+.++++|
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~--------~I~~~aF~~~~~L 323 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKIT--------TLGDELFGNGVPS 323 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCC--------EECTTTTCTTCCC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccC--------ccchhhhcCCcch
Confidence 999997 8888654 88999999 999987 478888777899999999999777654 2233456677888
Q ss_pred cEEEe
Q 003328 198 TTLEI 202 (829)
Q Consensus 198 ~~L~l 202 (829)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 87753
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=2.5e-09 Score=115.01 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=100.4
Q ss_pred CCCCcEEEeecCCCcccc-cccchhhhcCCCCccEEEecCCCCCC--CchhhcCCCCCcEEEccccCCCCc--ccc----
Q 003328 41 CPNLQLFLLITKGIAPVS-MQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDV--AAI---- 111 (829)
Q Consensus 41 ~~~Lr~L~l~~~~~~~~~-~~lp~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~l~~Lr~L~L~~~~l~~l--~~i---- 111 (829)
.++|++|++++|...... ..+...+....++|++|+|++|.++. +......+++|++|+|++|.+... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457888888888722100 01111111123688888888888763 222223456788888888887632 222
Q ss_pred -cCCCCCcEEEccCCCCcc-----chhhhcCCCCCCEEeccCCCCCCcc-----ChhhhcCCCcccEEEccCCccccccc
Q 003328 112 -GQLKKLEILSFRGSDIKQ-----LPLEIGQLTRLQLLDLSNCSSLVVI-----APNVISKFSRLEELYMGDSFSQWDKV 180 (829)
Q Consensus 112 -~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~~l~~L~~L~~L~l~~~~~~~~~~ 180 (829)
....+|++|++++|.++. ++..+..+++|++|++++|. ++.. +.. +...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~-- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT-- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH--
Confidence 346778888888887763 45556778888888888876 4432 222 56677888888888876410
Q ss_pred cCCCccchhhhcCCCCCcEEEeecCCCC
Q 003328 181 EGGSNASLAELKGLSKLTTLEIHVWDAQ 208 (829)
Q Consensus 181 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 208 (829)
...+....+...++|++|++++|.+.
T Consensus 227 --g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 --AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp --HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred --HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 00122234555677888888887764
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=6.3e-08 Score=103.56 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred EecCC-CCCCCchhhcCCCCCcEEEccc-cCCCCc--ccccCCCCCcEEEccCCCCccchh-hhcCCCCCCEEeccCCCC
Q 003328 76 SLIGI-HFSSLPSSLGRLINLQTLCLDW-CQLEDV--AAIGQLKKLEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSS 150 (829)
Q Consensus 76 ~L~~~-~i~~lp~~l~~l~~Lr~L~L~~-~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 150 (829)
+.+++ +++.+|. +..+.+|++|+|++ |.++.+ ..|++|.+|++|+|++|.++.+|. .|++|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~- 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-
Confidence 44444 4444444 44444455555543 444444 334455555555555554444432 34445555555555443
Q ss_pred CCccChhhhcCCCcccEEEccCCc
Q 003328 151 LVVIAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 151 l~~lp~~~l~~L~~L~~L~l~~~~ 174 (829)
+..+|.+.+..+. |++|++.+|.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred cceeCHHHcccCC-ceEEEeeCCC
Confidence 4444443222222 5555554443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=1.2e-07 Score=101.30 Aligned_cols=90 Identities=24% Similarity=0.197 Sum_probs=46.9
Q ss_pred ccccchhhhcCCCCccEEEecC-CCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh
Q 003328 58 SMQISDLFFEGTEELKVLSLIG-IHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE 133 (829)
Q Consensus 58 ~~~lp~~~~~~l~~Lr~L~L~~-~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~ 133 (829)
+..+|. +..+++|++|+|++ |.++.+| ..|..+.+|++|+|++|.++.+ ..|++|.+|++|+|++|.++.+|..
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 344444 34555555555553 5555443 3355555555555555555544 3455555666666666655555544
Q ss_pred hcCCCCCCEEeccCCC
Q 003328 134 IGQLTRLQLLDLSNCS 149 (829)
Q Consensus 134 i~~L~~L~~L~l~~~~ 149 (829)
+.....|++|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 3333336666665554
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=2.6e-06 Score=92.39 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=49.9
Q ss_pred cccchhhhcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCCCccchhh-hc
Q 003328 59 MQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLPLE-IG 135 (829)
Q Consensus 59 ~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~ 135 (829)
..++...|.++.+|+.+++.++.++.+|...-.+.+|+.+.+..+ ++.+ ..|.++.+|+.+++..+ ++.++.. +.
T Consensus 169 ~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 169 EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 344444445555555555555555444443333445555555422 4433 44455555555555442 3333322 22
Q ss_pred CCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 136 QLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 136 ~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
+ .+|+.+.+.. .+..++...+..+.+|+.+++.++
T Consensus 247 ~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 247 E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence 2 4455555532 134444443445555555555443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=2.4e-06 Score=92.65 Aligned_cols=141 Identities=12% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCcEEEcCCCCCCCCCCcc--CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcE
Q 003328 21 DPIAISLPQRDIQELPERL--QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQT 97 (829)
Q Consensus 21 ~l~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~ 97 (829)
+|+.+.+.. .+..++... +|++|+.+.+.++. +..++...|. ..+|+.+.+..+ ++.++ ..+.++++|+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~----l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK----ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC----CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc----ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence 466666654 455554322 56677777776665 5556655554 356666666532 44433 23455666666
Q ss_pred EEccccCCCCc--ccccCCCCCcEEEccCCCCccch-hhhcCCCCCCEEeccCCCC----CCccChhhhcCCCcccEEEc
Q 003328 98 LCLDWCQLEDV--AAIGQLKKLEILSFRGSDIKQLP-LEIGQLTRLQLLDLSNCSS----LVVIAPNVISKFSRLEELYM 170 (829)
Q Consensus 98 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~----l~~lp~~~l~~L~~L~~L~l 170 (829)
+.+..+ ++.+ ..|.+ .+|+.+.+.. .++.++ ..+.++++|+.+.+.++.. ...++...+..+.+|+.+++
T Consensus 231 l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 231 IEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 666542 3333 33333 4555555532 344442 2345555555555544321 11244433445555555554
Q ss_pred c
Q 003328 171 G 171 (829)
Q Consensus 171 ~ 171 (829)
.
T Consensus 308 ~ 308 (401)
T 4fdw_A 308 P 308 (401)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.2e-06 Score=81.57 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=12.2
Q ss_pred cccCCCcCeEEEeCCCCCcc
Q 003328 653 IIEMPVLCSLAIENCTDMET 672 (829)
Q Consensus 653 ~~~~~sL~~L~i~~C~~L~~ 672 (829)
+..+++|++|++++|++++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 34456666666666666654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.5e-06 Score=92.51 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=98.9
Q ss_pred CCCCcEEEcCCCCCCC---------CCCcc-CCCCCcEEEeecCCCcc--c----ccccchhhhcCCCCccEEEecCCCC
Q 003328 19 RKDPIAISLPQRDIQE---------LPERL-QCPNLQLFLLITKGIAP--V----SMQISDLFFEGTEELKVLSLIGIHF 82 (829)
Q Consensus 19 ~~~l~~L~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~~--~----~~~lp~~~~~~l~~Lr~L~L~~~~i 82 (829)
+.+++.|.+....+.. +.... .+++||.|.+....... . ...+. .++..+++|+.|+++++.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCC
Confidence 3467777777654331 11112 46788888875542100 0 01232 3457778888888877632
Q ss_pred CCCchhhcCCCCCcEEEccccCCCC--ccccc--CCCCCcEEEccCC--------CCccchhhh--cCCCCCCEEeccCC
Q 003328 83 SSLPSSLGRLINLQTLCLDWCQLED--VAAIG--QLKKLEILSFRGS--------DIKQLPLEI--GQLTRLQLLDLSNC 148 (829)
Q Consensus 83 ~~lp~~l~~l~~Lr~L~L~~~~l~~--l~~i~--~L~~L~~L~l~~~--------~l~~lp~~i--~~L~~L~~L~l~~~ 148 (829)
..++. + .+++|++|++..|.+.. +..+. ++++|++|+|+.+ .+..+...+ +.+++|++|++.+|
T Consensus 185 l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 23443 3 37788888888777652 23343 6788888887531 122222222 34678888888776
Q ss_pred CCCCccChhhhc---CCCcccEEEccCCccccccccCCCccchhhhcCCCCCcEEEeecCCC
Q 003328 149 SSLVVIAPNVIS---KFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIHVWDA 207 (829)
Q Consensus 149 ~~l~~lp~~~l~---~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 207 (829)
......+.. +. .+++|++|+++.|.+... ...+....+..+++|+.|+++.|.+
T Consensus 263 ~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~----G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 263 EEQNVVVEM-FLESDILPQLETMDISAGVLTDE----GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHH----HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCchHHHHH-HHhCccCCCCCEEECCCCCCChH----HHHHHHhhcccCCcceEEECCCCcC
Confidence 632222222 22 467788888877655400 0011122334566778888776654
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=2e-06 Score=80.17 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCCcEEEccccCCCCc--ccccCCCCCcEEEccCC-CCcc-chhhhcCC----CCCCEEeccCCCCCCccChhhhcCCCc
Q 003328 93 INLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGS-DIKQ-LPLEIGQL----TRLQLLDLSNCSSLVVIAPNVISKFSR 164 (829)
Q Consensus 93 ~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~-lp~~i~~L----~~L~~L~l~~~~~l~~lp~~~l~~L~~ 164 (829)
++|++||+++|.++.. ..+..+++|++|++++| .|+. --..++.+ ++|++|++++|..+++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4566666666665532 55566666666666666 3442 12234443 256666666666555543333556666
Q ss_pred ccEEEccCCc
Q 003328 165 LEELYMGDSF 174 (829)
Q Consensus 165 L~~L~l~~~~ 174 (829)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=3.9e-06 Score=89.22 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=103.3
Q ss_pred CCCCCcEEEcCCCCCC----------CCCCcc-CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCC-C
Q 003328 18 IRKDPIAISLPQRDIQ----------ELPERL-QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSS-L 85 (829)
Q Consensus 18 ~~~~l~~L~l~~~~~~----------~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~-l 85 (829)
.+++|+.|.+...... .+...+ .+|+|+.|.+.++. ...++. +. +.+|+.|++..+.+.. .
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~----~l~l~~--~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN----NLSIGK--KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB----TCBCCS--CB-CTTCSEEEEECSBCCHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC----Cceecc--cc-CCCCcEEEEecCCCChHH
Confidence 4579999999765432 122223 67999999999885 123444 23 8899999999888753 2
Q ss_pred chhhc--CCCCCcEEEcccc--C------CCCc-ccc--cCCCCCcEEEccCCCCcc-chhhh---cCCCCCCEEeccCC
Q 003328 86 PSSLG--RLINLQTLCLDWC--Q------LEDV-AAI--GQLKKLEILSFRGSDIKQ-LPLEI---GQLTRLQLLDLSNC 148 (829)
Q Consensus 86 p~~l~--~l~~Lr~L~L~~~--~------l~~l-~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~ 148 (829)
...+. .+++|++|+|+.+ . +..+ ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 23333 7999999998632 1 2233 223 358899999999998762 22222 35889999999887
Q ss_pred CCCCc-----cChhhhcCCCcccEEEccCCccc
Q 003328 149 SSLVV-----IAPNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 149 ~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~ 176 (829)
. ++. ++.+ +..+++|+.|+++.|.+.
T Consensus 290 ~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 V-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp C-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred C-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 6 554 2222 456899999999998765
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4e-06 Score=80.25 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=67.6
Q ss_pred hhcCCCCccEEEecCC-CCCC-----CchhhcCCCCCcEEEccccCCCC-----c-ccccCCCCCcEEEccCCCCcc---
Q 003328 65 FFEGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRGSDIKQ--- 129 (829)
Q Consensus 65 ~~~~l~~Lr~L~L~~~-~i~~-----lp~~l~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~--- 129 (829)
++...+.|++|+|++| .+.. +...+...++|++|+|++|.+.. + ..+....+|++|++++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456667777777776 6652 44555566677777777776652 3 445555667777777776652
Q ss_pred --chhhhcCCCCCCEEec--cCCCCCCcc-----ChhhhcCCCcccEEEccCCccc
Q 003328 130 --LPLEIGQLTRLQLLDL--SNCSSLVVI-----APNVISKFSRLEELYMGDSFSQ 176 (829)
Q Consensus 130 --lp~~i~~L~~L~~L~l--~~~~~l~~l-----p~~~l~~L~~L~~L~l~~~~~~ 176 (829)
+...+...++|++|++ ++|. ++.. ... +...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 4555666677777777 5554 4332 222 455577777777777553
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=5.6e-06 Score=79.25 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCCCCcEEEeecC-CCccc-ccccchhhhcCCCCccEEEecCCCCCC-----CchhhcCCCCCcEEEccccCCCC-----
Q 003328 40 QCPNLQLFLLITK-GIAPV-SMQISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED----- 107 (829)
Q Consensus 40 ~~~~Lr~L~l~~~-~~~~~-~~~lp~~~~~~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~~l~~----- 107 (829)
..++|++|++++| ...+. ...+... +...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 3556666666666 42110 0112222 3455666666666666552 34444555566666666666552
Q ss_pred c-ccccCCCCCcEEEc--cCCCCcc-----chhhhcCCCCCCEEeccCCC
Q 003328 108 V-AAIGQLKKLEILSF--RGSDIKQ-----LPLEIGQLTRLQLLDLSNCS 149 (829)
Q Consensus 108 l-~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 149 (829)
+ ..+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3 45555566666666 5555542 33444555666666666654
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=0.00015 Score=78.68 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=45.8
Q ss_pred CCCCCcEEEEeecCCceEEecccCcccccccccccceeccccccchhhhcCCCCCCCCCCCccEEEEecCCCCccccchH
Q 003328 290 GFPRLKHLWVERCSEILHIVGSVGRVRCTIFPLLESLSLWFLSNLETICDSQLTEDQSFSNLRIIEVKSCDKLKHLFSFS 369 (829)
Q Consensus 290 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~~~~L~~L~i~~C~~L~~l~~~~ 369 (829)
.+.+|+.+.+.. +++.+.... ...+.+|+++++.+ +++.+.... ...+.+|+.+.+.. +++.++. .
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~a----F~~c~~L~~i~lp~--~v~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~-~ 360 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEA----FESCTSLVSIDLPY--LVEEIGKRS---FRGCTSLSNINFPL--SLRKIGA-N 360 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTT----TTTCTTCCEECCCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEECT-T
T ss_pred cccccccccccc--ccceechhh----hcCCCCCCEEEeCC--cccEEhHHh---ccCCCCCCEEEECc--cccEehH-H
Confidence 667787777743 355543221 23456777777742 233332222 23667788887753 3555543 3
Q ss_pred HHHhhcccceEEEec
Q 003328 370 MAKNLLRLQKVEVFF 384 (829)
Q Consensus 370 ~~~~l~~L~~L~i~~ 384 (829)
.+.++++|+++++..
T Consensus 361 aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 361 AFQGCINLKKVELPK 375 (394)
T ss_dssp TBTTCTTCCEEEEEG
T ss_pred HhhCCCCCCEEEECC
Confidence 346677888887754
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=0.00043 Score=74.91 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=17.9
Q ss_pred CCCCccEEEEecCCCCccccchHHHHhhcccceEEEe
Q 003328 347 SFSNLRIIEVKSCDKLKHLFSFSMAKNLLRLQKVEVF 383 (829)
Q Consensus 347 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 383 (829)
.+.+|+.+.+.+ +++.++. ..+.++.+|+.+++.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCC
T ss_pred cccccccccccc--ccceech-hhhcCCCCCCEEEeC
Confidence 456666666643 3444433 223445666666653
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=4.5e-05 Score=76.71 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCCCCcEEEccccCCCCcc----cccCCCCCcEEEccCCCCccchhhhcCCC--CCCEEeccCCCCCCccCh------hh
Q 003328 91 RLINLQTLCLDWCQLEDVA----AIGQLKKLEILSFRGSDIKQLPLEIGQLT--RLQLLDLSNCSSLVVIAP------NV 158 (829)
Q Consensus 91 ~l~~Lr~L~L~~~~l~~l~----~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------~~ 158 (829)
++++|++|+|++|++..+. .+.++++|++|+|++|.++.+ ..+..+. +|++|++.+|.....+|. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3444555555555444331 223455555555555544443 1222232 555555555542222221 12
Q ss_pred hcCCCcccEEE
Q 003328 159 ISKFSRLEELY 169 (829)
Q Consensus 159 l~~L~~L~~L~ 169 (829)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.30 E-value=0.017 Score=62.18 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=43.0
Q ss_pred CcEEEeecCCCcccccccchhhhcCCCCccEEEecCCC---CCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCCCCC
Q 003328 44 LQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIH---FSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKL 117 (829)
Q Consensus 44 Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~---i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L 117 (829)
|+.+.+... +..+.+..|.++.+|+.+.+..+. ++.+. ..+..+.+|+.+.+..+ ++.+ ..+..+.+|
T Consensus 66 L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 66 LTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred CEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 555555321 344555555555555555554432 33322 23444555554444322 3333 344555555
Q ss_pred cEEEccCCCCccchh-hhcCCCCCCEEecc
Q 003328 118 EILSFRGSDIKQLPL-EIGQLTRLQLLDLS 146 (829)
Q Consensus 118 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 146 (829)
+.+.+... +..++. .+..+.+|+.+.+.
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred ccccccce-eeeecccceeccccccccccc
Confidence 55555432 222222 24445555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.00027 Score=71.02 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCCCcEEEccCCCCccc---hhhhcCCCCCCEEeccCCCCCCccChhhhcCCC--cccEEEccCCcc
Q 003328 113 QLKKLEILSFRGSDIKQL---PLEIGQLTRLQLLDLSNCSSLVVIAPNVISKFS--RLEELYMGDSFS 175 (829)
Q Consensus 113 ~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~--~L~~L~l~~~~~ 175 (829)
++++|++|+|++|.++.+ |..++++++|++|++++|. +..+.. +..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcC
Confidence 445555555555544433 2334455555555555544 333311 23333 555555555543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.22 E-value=0.026 Score=60.75 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=81.2
Q ss_pred ccccchhhhcCCC-CccEEEecCCCCCCCc-hhhcCCCCCcEEEccccC---CCCc--ccccCCCCCcEEEccCCCCccc
Q 003328 58 SMQISDLFFEGTE-ELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQ---LEDV--AAIGQLKKLEILSFRGSDIKQL 130 (829)
Q Consensus 58 ~~~lp~~~~~~l~-~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~---l~~l--~~i~~L~~L~~L~l~~~~l~~l 130 (829)
+..+++..|.+++ .|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 5567777788885 5999999653 55543 457889999999998763 6666 67888888888777653 5555
Q ss_pred hh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 131 PL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 131 p~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
+. .+..+.+|+.+.+... +..++......+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 43 3678889999888642 56666665777888888887654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.66 E-value=0.06 Score=57.49 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=87.5
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEccccCCCCc--ccccCCCC
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 116 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~ 116 (829)
.+.+|+.+.+..+ ...++...|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+... +..+ ..|.++.+
T Consensus 215 ~~~~l~~i~~~~~-----~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 215 YGKNLKKITITSG-----VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TCSSCSEEECCTT-----CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccceeeeccc-----eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 5677777777543 35566666778888888888654 44433 34567788888887543 5555 66778888
Q ss_pred CcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCC
Q 003328 117 LEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 173 (829)
Q Consensus 117 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 173 (829)
|+.+.+.++.++.++. .+.++.+|+.+.+.. .+..++...+.++.+|+.+.+..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 8888888777777754 477888888888864 266676665778888888877543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.44 E-value=0.078 Score=56.55 Aligned_cols=146 Identities=13% Similarity=0.213 Sum_probs=101.9
Q ss_pred CCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEccccCCCCc--ccccCCCC
Q 003328 40 QCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKK 116 (829)
Q Consensus 40 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~ 116 (829)
.+..+..+.+.... ..+....|.....|+.+.+..+ +..+ ...+..+.+|+.+.+..+ ++.+ ..+.++.+
T Consensus 192 ~~~~~~~~~~~~~~-----~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 192 AAKTGTEFTIPSTV-----KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp TTCCCSEEECCTTC-----CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccce-----eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 34555565554433 3444455678889999988654 3333 345678899999999765 6666 67888999
Q ss_pred CcEEEccCCCCccchh-hhcCCCCCCEEeccCCCCCCccChhhhcCCCcccEEEccCCccccccccCCCccchhhhcCCC
Q 003328 117 LEILSFRGSDIKQLPL-EIGQLTRLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFSQWDKVEGGSNASLAELKGLS 195 (829)
Q Consensus 117 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 195 (829)
|+.+.+.. .++.++. .+.++.+|+.+.+.++. +..++...+.++.+|+.+.+..+... -....+.+++
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~l~~---------I~~~aF~~C~ 333 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTALKT---------IQVYAFKNCK 333 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCE---------ECTTTTTTCT
T ss_pred hccccccc-cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCccccE---------EHHHHhhCCC
Confidence 99999975 4666654 47889999999998754 77788776889999999998654211 1223455677
Q ss_pred CCcEEEee
Q 003328 196 KLTTLEIH 203 (829)
Q Consensus 196 ~L~~L~l~ 203 (829)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 78777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.81 E-value=0.036 Score=52.43 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=60.9
Q ss_pred hcCCCCccEEEecCC-CCCC-----CchhhcCCCCCcEEEccccCCC-----Cc-ccccCCCCCcEEEccCCCCc-----
Q 003328 66 FEGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLE-----DV-AAIGQLKKLEILSFRGSDIK----- 128 (829)
Q Consensus 66 ~~~l~~Lr~L~L~~~-~i~~-----lp~~l~~l~~Lr~L~L~~~~l~-----~l-~~i~~L~~L~~L~l~~~~l~----- 128 (829)
..+-+.|+.|+|+++ .|.. +-+.+..-.+|+.|+|++|.+. .+ +.+..=+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345556666666664 5541 4445555566777777777665 23 34444566777777777665
Q ss_pred cchhhhcCCCCCCEEeccCCC--CCCc-----cChhhhcCCCcccEEEccCCc
Q 003328 129 QLPLEIGQLTRLQLLDLSNCS--SLVV-----IAPNVISKFSRLEELYMGDSF 174 (829)
Q Consensus 129 ~lp~~i~~L~~L~~L~l~~~~--~l~~-----lp~~~l~~L~~L~~L~l~~~~ 174 (829)
.+-+.+..=+.|++|+++++. .++. +.. .+..=+.|++|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 233445555667777776542 1222 111 14445677777776554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.064 Score=47.17 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=25.3
Q ss_pred EEEcCCCCCC--CCCCccCCCCCcEEEeecCCCcccccccchhhhcCCCCccEEEecCCCC
Q 003328 24 AISLPQRDIQ--ELPERLQCPNLQLFLLITKGIAPVSMQISDLFFEGTEELKVLSLIGIHF 82 (829)
Q Consensus 24 ~L~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i 82 (829)
+++-++++++ .+|..+ -++|++|+|++|. +..+|..+|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~----l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNN----LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSC----CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCc----CCccChhhhhhccccCEEEecCCCe
Confidence 4445555554 444332 1234555555554 4444444444455555555544433
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.29 E-value=0.064 Score=47.20 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=24.6
Q ss_pred EEEecCCCCC--CCchhhcCCCCCcEEEccccCCCCc--ccccCCCCCcEEEccCCC
Q 003328 74 VLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSD 126 (829)
Q Consensus 74 ~L~L~~~~i~--~lp~~l~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~ 126 (829)
+++-++..++ .+|..+. .+|++|+|++|.++.+ ..|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4445555554 4554322 2345555555555544 334455555555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.086 Score=49.82 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=17.6
Q ss_pred cCCCCccEEEecCCCCC-----CCchhhcCCCCCcEEEccccCCC
Q 003328 67 EGTEELKVLSLIGIHFS-----SLPSSLGRLINLQTLCLDWCQLE 106 (829)
Q Consensus 67 ~~l~~Lr~L~L~~~~i~-----~lp~~l~~l~~Lr~L~L~~~~l~ 106 (829)
..-+.|+.|+|++|.+. .+.+.+..-+.|++|+|++|.|.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33344455555444443 13333333344555555544443
Done!