Query 003329
Match_columns 829
No_of_seqs 637 out of 3136
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 21:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 2.4E-75 5.3E-80 645.4 27.1 507 129-808 1-524 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 6.4E-46 1.4E-50 336.1 10.4 97 665-761 1-97 (97)
3 KOG0145 RNA-binding protein EL 100.0 2.1E-30 4.5E-35 264.1 14.0 213 160-398 38-268 (360)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.6E-28 2.1E-32 265.2 33.5 159 162-324 2-172 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.3E-27 5.1E-32 262.1 20.8 224 94-325 3-351 (352)
6 TIGR01659 sex-lethal sex-letha 100.0 2.5E-27 5.4E-32 261.9 20.5 163 159-325 103-277 (346)
7 TIGR01628 PABP-1234 polyadenyl 99.9 5.3E-27 1.2E-31 275.7 20.1 268 27-329 48-370 (562)
8 TIGR01628 PABP-1234 polyadenyl 99.9 1.4E-26 3E-31 272.2 19.7 247 97-351 3-311 (562)
9 KOG0148 Apoptosis-promoting RN 99.9 6.7E-26 1.5E-30 233.0 15.7 217 94-325 7-240 (321)
10 KOG0110 RNA-binding protein (R 99.9 6.1E-26 1.3E-30 258.0 11.7 306 25-350 250-638 (725)
11 KOG0145 RNA-binding protein EL 99.9 3E-25 6.4E-30 226.6 14.8 226 90-323 37-358 (360)
12 TIGR01645 half-pint poly-U bin 99.9 6.9E-25 1.5E-29 254.8 19.3 164 161-324 105-285 (612)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.3E-24 2.8E-29 251.1 20.3 217 98-322 6-350 (481)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-24 2.7E-29 252.4 19.0 222 93-325 57-309 (578)
15 KOG0117 Heterogeneous nuclear 99.9 2.5E-23 5.4E-28 226.2 23.9 225 92-327 81-335 (506)
16 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-23 5.6E-28 238.2 20.0 163 159-322 85-265 (457)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.1E-23 6.7E-28 239.7 19.4 164 160-323 272-480 (481)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 2.6E-22 5.6E-27 233.1 20.0 178 162-349 57-257 (578)
19 KOG0144 RNA-binding protein CU 99.9 5.8E-23 1.3E-27 222.3 13.5 164 161-327 32-210 (510)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.7E-22 1.2E-26 230.0 19.3 164 158-323 170-375 (509)
21 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-21 2.8E-26 224.3 20.8 221 95-323 90-448 (457)
22 KOG0117 Heterogeneous nuclear 99.9 2.5E-21 5.4E-26 210.7 16.6 181 161-351 81-285 (506)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-20 3E-25 218.5 19.1 162 161-322 293-501 (509)
24 KOG0131 Splicing factor 3b, su 99.8 6.4E-21 1.4E-25 187.1 12.0 163 161-326 7-180 (203)
25 KOG0109 RNA-binding protein LA 99.8 5E-21 1.1E-25 198.9 10.3 148 164-323 3-150 (346)
26 KOG0127 Nucleolar protein fibr 99.8 6E-20 1.3E-24 203.5 15.9 162 164-325 6-198 (678)
27 KOG0127 Nucleolar protein fibr 99.8 5.9E-20 1.3E-24 203.5 15.4 163 163-325 117-380 (678)
28 KOG0123 Polyadenylate-binding 99.8 7.3E-19 1.6E-23 195.9 16.1 173 164-350 2-192 (369)
29 KOG0144 RNA-binding protein CU 99.8 2.9E-19 6.4E-24 193.8 9.8 224 92-324 32-505 (510)
30 KOG0110 RNA-binding protein (R 99.8 1.1E-18 2.3E-23 199.4 14.1 162 164-325 516-695 (725)
31 KOG0124 Polypyrimidine tract-b 99.8 1.6E-18 3.4E-23 184.2 10.6 157 163-321 113-288 (544)
32 KOG0148 Apoptosis-promoting RN 99.7 7.2E-18 1.6E-22 174.2 12.2 135 161-325 4-144 (321)
33 KOG0123 Polyadenylate-binding 99.7 2E-17 4.2E-22 184.6 16.2 210 114-326 10-249 (369)
34 KOG4206 Spliceosomal protein s 99.7 4.3E-17 9.4E-22 165.9 15.6 163 159-321 5-220 (221)
35 TIGR01645 half-pint poly-U bin 99.7 1.5E-16 3.3E-21 185.6 19.2 133 96-236 109-282 (612)
36 KOG0146 RNA-binding protein ET 99.7 8E-18 1.7E-22 173.1 7.1 166 162-327 18-369 (371)
37 KOG4212 RNA-binding protein hn 99.7 3.2E-14 7E-19 154.7 29.9 158 163-320 44-291 (608)
38 KOG4205 RNA-binding protein mu 99.6 4.2E-16 9.1E-21 169.0 10.1 162 162-325 5-178 (311)
39 KOG0147 Transcriptional coacti 99.6 1.7E-16 3.7E-21 177.5 5.7 164 157-321 173-356 (549)
40 KOG0105 Alternative splicing f 99.6 3.8E-15 8.3E-20 146.6 12.3 149 161-311 4-176 (241)
41 KOG0147 Transcriptional coacti 99.6 1.1E-14 2.3E-19 163.3 11.7 212 110-321 187-526 (549)
42 KOG1457 RNA binding protein (c 99.5 1.7E-13 3.8E-18 138.6 12.0 150 162-311 33-274 (284)
43 KOG0106 Alternative splicing f 99.5 4E-14 8.6E-19 145.5 6.2 150 164-319 2-167 (216)
44 TIGR01659 sex-lethal sex-letha 99.5 1.9E-13 4.1E-18 151.8 11.6 105 246-350 105-218 (346)
45 KOG1190 Polypyrimidine tract-b 99.5 4.7E-13 1E-17 145.2 13.5 166 162-327 149-377 (492)
46 PLN03134 glycine-rich RNA-bind 99.4 4.2E-13 9.1E-18 131.5 10.1 80 160-239 31-115 (144)
47 PLN03134 glycine-rich RNA-bind 99.4 5.9E-13 1.3E-17 130.5 10.4 78 247-324 33-115 (144)
48 KOG1190 Polypyrimidine tract-b 99.4 3.3E-12 7.1E-17 138.7 14.4 160 163-322 297-490 (492)
49 KOG1548 Transcription elongati 99.4 1.2E-11 2.5E-16 132.4 15.4 165 160-324 131-353 (382)
50 PF00076 RRM_1: RNA recognitio 99.3 5.6E-12 1.2E-16 106.1 7.1 66 251-316 1-70 (70)
51 PF00076 RRM_1: RNA recognitio 99.3 8.1E-12 1.8E-16 105.1 8.1 66 166-231 1-70 (70)
52 KOG0107 Alternative splicing f 99.2 7.1E-12 1.5E-16 123.2 6.2 77 162-238 9-85 (195)
53 COG0724 RNA-binding proteins ( 99.2 3.9E-11 8.4E-16 124.1 12.1 119 163-281 115-258 (306)
54 KOG0107 Alternative splicing f 99.2 1E-11 2.2E-16 122.1 6.7 78 247-324 9-86 (195)
55 KOG4211 Splicing factor hnRNP- 99.2 6.9E-11 1.5E-15 131.6 13.5 157 163-322 10-181 (510)
56 KOG4660 Protein Mei2, essentia 99.2 2.2E-11 4.8E-16 137.3 7.5 164 160-326 72-253 (549)
57 KOG0114 Predicted RNA-binding 99.2 5.3E-11 1.1E-15 107.9 8.2 80 159-238 14-95 (124)
58 KOG0109 RNA-binding protein LA 99.2 1.4E-11 3E-16 129.2 5.2 132 97-239 5-151 (346)
59 KOG0124 Polypyrimidine tract-b 99.2 2.2E-10 4.7E-15 122.9 12.7 159 162-320 209-532 (544)
60 KOG0120 Splicing factor U2AF, 99.2 1.3E-10 2.9E-15 132.2 11.8 165 159-323 285-492 (500)
61 KOG0125 Ataxin 2-binding prote 99.2 6.6E-11 1.4E-15 125.9 8.2 77 247-323 95-174 (376)
62 KOG0121 Nuclear cap-binding pr 99.2 4.7E-11 1E-15 112.0 6.3 76 160-235 33-113 (153)
63 KOG0122 Translation initiation 99.1 1.1E-10 2.3E-15 120.2 7.8 79 160-238 186-269 (270)
64 PLN03120 nucleic acid binding 99.1 2E-10 4.4E-15 121.2 9.6 76 163-239 4-81 (260)
65 PLN03120 nucleic acid binding 99.1 1.8E-10 4E-15 121.6 9.2 75 248-323 4-80 (260)
66 smart00362 RRM_2 RNA recogniti 99.1 3.8E-10 8.2E-15 93.6 8.6 69 250-318 1-72 (72)
67 PF14259 RRM_6: RNA recognitio 99.1 3E-10 6.4E-15 96.6 7.6 66 251-316 1-70 (70)
68 KOG0122 Translation initiation 99.1 2.5E-10 5.5E-15 117.5 8.4 77 247-323 188-269 (270)
69 KOG0114 Predicted RNA-binding 99.1 5.5E-10 1.2E-14 101.4 9.6 81 247-327 17-99 (124)
70 PF14259 RRM_6: RNA recognitio 99.1 2.7E-10 5.9E-15 96.8 7.2 66 166-231 1-70 (70)
71 KOG0125 Ataxin 2-binding prote 99.1 2.8E-10 6.1E-15 121.2 8.4 78 161-238 94-174 (376)
72 KOG4207 Predicted splicing fac 99.0 2.5E-10 5.4E-15 114.8 6.6 77 160-236 10-91 (256)
73 KOG0121 Nuclear cap-binding pr 99.0 2.4E-10 5.2E-15 107.3 5.8 75 247-321 35-114 (153)
74 PF13893 RRM_5: RNA recognitio 99.0 7.9E-10 1.7E-14 90.5 8.2 56 265-320 1-56 (56)
75 KOG0131 Splicing factor 3b, su 99.0 7.8E-10 1.7E-14 109.6 9.1 105 247-351 8-122 (203)
76 smart00362 RRM_2 RNA recogniti 99.0 8.1E-10 1.8E-14 91.6 7.9 69 165-233 1-72 (72)
77 KOG0149 Predicted RNA-binding 99.0 4.6E-10 1E-14 115.3 7.5 77 159-236 8-89 (247)
78 PLN03213 repressor of silencin 99.0 5.1E-10 1.1E-14 123.8 8.2 78 246-323 8-88 (759)
79 KOG0113 U1 small nuclear ribon 99.0 7.1E-10 1.5E-14 117.0 8.3 80 157-236 95-179 (335)
80 KOG1456 Heterogeneous nuclear 99.0 3.7E-09 8E-14 114.1 13.5 171 154-325 22-201 (494)
81 KOG4207 Predicted splicing fac 99.0 3.8E-10 8.3E-15 113.5 5.4 76 248-323 13-93 (256)
82 KOG0113 U1 small nuclear ribon 99.0 1.4E-09 3.1E-14 114.7 9.9 93 232-324 85-182 (335)
83 PLN03213 repressor of silencin 99.0 1.1E-09 2.4E-14 121.2 8.8 118 160-280 7-135 (759)
84 cd00590 RRM RRM (RNA recogniti 98.9 4E-09 8.8E-14 87.8 8.9 70 250-319 1-74 (74)
85 KOG4212 RNA-binding protein hn 98.9 1.2E-08 2.6E-13 111.9 14.8 70 249-320 537-608 (608)
86 smart00360 RRM RNA recognition 98.9 3.1E-09 6.8E-14 87.6 7.8 66 253-318 1-71 (71)
87 KOG0105 Alternative splicing f 98.9 1.2E-09 2.6E-14 108.2 6.0 78 247-324 5-84 (241)
88 PLN03121 nucleic acid binding 98.9 3.7E-09 7.9E-14 110.3 9.5 73 163-236 5-79 (243)
89 cd00590 RRM RRM (RNA recogniti 98.9 4.3E-09 9.3E-14 87.7 8.1 70 165-234 1-74 (74)
90 KOG0149 Predicted RNA-binding 98.9 1.6E-09 3.4E-14 111.5 6.3 78 246-324 10-92 (247)
91 PF13893 RRM_5: RNA recognitio 98.9 2.2E-09 4.8E-14 87.8 6.0 56 180-235 1-56 (56)
92 smart00360 RRM RNA recognition 98.9 3.4E-09 7.4E-14 87.4 7.2 66 168-233 1-71 (71)
93 PLN03121 nucleic acid binding 98.9 3.8E-09 8.3E-14 110.2 9.1 74 248-322 5-80 (243)
94 KOG0111 Cyclophilin-type pepti 98.9 8.5E-10 1.8E-14 111.8 3.9 81 247-327 9-94 (298)
95 KOG1456 Heterogeneous nuclear 98.9 3.2E-08 6.8E-13 107.0 14.5 164 160-323 117-363 (494)
96 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.4E-14 110.9 3.2 79 161-239 8-91 (298)
97 COG0724 RNA-binding proteins ( 98.8 1E-08 2.2E-13 106.1 9.1 75 248-322 115-194 (306)
98 KOG1365 RNA-binding protein Fu 98.8 2.5E-08 5.5E-13 108.0 10.2 159 164-323 162-362 (508)
99 KOG0126 Predicted RNA-binding 98.8 1E-09 2.3E-14 108.6 -0.4 76 245-320 32-112 (219)
100 KOG0130 RNA-binding protein RB 98.8 8.8E-09 1.9E-13 97.6 5.7 80 244-323 68-152 (170)
101 KOG0112 Large RNA-binding prot 98.8 7.2E-09 1.6E-13 122.2 6.2 165 154-325 363-533 (975)
102 KOG0108 mRNA cleavage and poly 98.7 1.7E-08 3.7E-13 114.5 7.7 78 249-326 19-101 (435)
103 KOG0108 mRNA cleavage and poly 98.7 1.4E-08 3E-13 115.3 6.9 75 164-238 19-98 (435)
104 KOG0126 Predicted RNA-binding 98.7 1.4E-09 3E-14 107.7 -1.0 76 162-237 34-114 (219)
105 KOG0130 RNA-binding protein RB 98.7 1.4E-08 3E-13 96.3 5.5 78 162-239 71-153 (170)
106 KOG4205 RNA-binding protein mu 98.7 2.4E-08 5.3E-13 108.9 8.2 161 114-275 18-214 (311)
107 smart00361 RRM_1 RNA recogniti 98.7 5.7E-08 1.2E-12 83.5 7.3 56 262-317 2-69 (70)
108 KOG4206 Spliceosomal protein s 98.7 4.4E-08 9.5E-13 100.6 7.2 77 249-325 10-92 (221)
109 KOG0132 RNA polymerase II C-te 98.6 5.4E-08 1.2E-12 113.3 7.4 76 163-239 421-496 (894)
110 KOG0129 Predicted RNA-binding 98.6 3.2E-07 7E-12 103.5 12.5 158 159-320 255-451 (520)
111 KOG0120 Splicing factor U2AF, 98.6 9.7E-08 2.1E-12 109.2 8.4 162 161-324 173-370 (500)
112 smart00361 RRM_1 RNA recogniti 98.5 1.4E-07 3.1E-12 81.0 6.2 56 177-232 2-69 (70)
113 KOG0128 RNA-binding protein SA 98.5 2.1E-08 4.6E-13 118.0 0.5 142 162-324 666-816 (881)
114 KOG0132 RNA polymerase II C-te 98.5 1.8E-07 3.9E-12 109.1 8.0 80 247-327 420-499 (894)
115 KOG0146 RNA-binding protein ET 98.5 1.7E-07 3.7E-12 97.7 6.9 82 159-240 281-367 (371)
116 KOG0153 Predicted RNA-binding 98.5 3.2E-07 7E-12 99.0 7.7 82 155-237 220-302 (377)
117 KOG4454 RNA binding protein (R 98.4 1.8E-07 3.9E-12 95.3 5.1 143 161-317 7-157 (267)
118 KOG0153 Predicted RNA-binding 98.4 6.8E-07 1.5E-11 96.5 7.6 78 244-322 224-302 (377)
119 KOG4210 Nuclear localization s 98.3 9.4E-07 2E-11 96.1 6.4 164 161-325 86-266 (285)
120 KOG0415 Predicted peptidyl pro 98.2 1.3E-06 2.9E-11 94.2 5.3 78 160-237 236-318 (479)
121 KOG0415 Predicted peptidyl pro 98.2 1.7E-06 3.6E-11 93.4 5.5 78 247-324 238-320 (479)
122 KOG4208 Nucleolar RNA-binding 98.2 4E-06 8.6E-11 85.3 7.3 79 160-238 46-130 (214)
123 KOG4208 Nucleolar RNA-binding 98.2 5.1E-06 1.1E-10 84.5 7.8 79 245-323 46-130 (214)
124 KOG0106 Alternative splicing f 98.1 2.3E-06 5E-11 88.7 4.9 70 250-322 3-72 (216)
125 KOG0226 RNA-binding proteins [ 98.1 2.2E-06 4.8E-11 89.3 4.2 159 166-324 99-271 (290)
126 KOG4661 Hsp27-ERE-TATA-binding 98.0 6.4E-06 1.4E-10 93.2 6.4 74 249-322 406-484 (940)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 4.1E-06 8.9E-11 85.1 3.7 90 663-752 5-99 (176)
128 KOG0533 RRM motif-containing p 98.0 1.3E-05 2.9E-10 84.7 7.6 77 161-237 81-161 (243)
129 KOG0151 Predicted splicing reg 98.0 1.3E-05 2.9E-10 93.0 8.1 84 154-237 165-256 (877)
130 KOG2193 IGF-II mRNA-binding pr 98.0 7.5E-07 1.6E-11 97.8 -2.2 150 164-322 2-156 (584)
131 KOG1457 RNA binding protein (c 97.9 3.8E-05 8.3E-10 78.9 9.2 79 247-325 33-120 (284)
132 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.3E-05 2.8E-10 90.8 6.2 77 160-236 402-483 (940)
133 KOG0533 RRM motif-containing p 97.8 5E-05 1.1E-09 80.4 8.0 78 247-324 82-163 (243)
134 KOG4211 Splicing factor hnRNP- 97.8 0.00013 2.7E-09 82.5 11.5 154 162-317 102-352 (510)
135 KOG0116 RasGAP SH3 binding pro 97.8 3.3E-05 7.1E-10 87.8 6.6 75 249-324 289-368 (419)
136 KOG0151 Predicted splicing reg 97.8 2.8E-05 6.1E-10 90.4 6.1 78 246-323 172-257 (877)
137 KOG0116 RasGAP SH3 binding pro 97.8 3.1E-05 6.8E-10 87.9 6.1 74 162-236 287-365 (419)
138 PF04059 RRM_2: RNA recognitio 97.7 0.00016 3.4E-09 66.5 7.9 73 164-236 2-85 (97)
139 KOG1548 Transcription elongati 97.6 0.00011 2.4E-09 79.8 7.2 74 248-321 134-219 (382)
140 KOG4209 Splicing factor RNPS1, 97.6 6.6E-05 1.4E-09 79.4 5.3 79 244-323 97-180 (231)
141 KOG4676 Splicing factor, argin 97.6 2.4E-05 5.3E-10 85.7 1.8 158 164-323 8-226 (479)
142 PF11608 Limkain-b1: Limkain b 97.6 0.00022 4.8E-09 63.3 7.3 70 249-323 3-77 (90)
143 PF11608 Limkain-b1: Limkain b 97.5 0.00029 6.3E-09 62.5 7.0 68 164-236 3-75 (90)
144 KOG1365 RNA-binding protein Fu 97.5 0.0009 1.9E-08 73.6 11.9 155 161-317 58-237 (508)
145 KOG4307 RNA binding protein RB 97.5 0.00014 3.1E-09 84.5 6.0 161 161-322 309-513 (944)
146 KOG4209 Splicing factor RNPS1, 97.4 0.00016 3.6E-09 76.4 4.9 77 159-236 97-178 (231)
147 KOG0226 RNA-binding proteins [ 97.4 0.00023 5E-09 74.6 5.2 74 162-235 189-267 (290)
148 KOG4454 RNA binding protein (R 97.3 0.0002 4.4E-09 73.5 3.5 75 247-322 8-86 (267)
149 PF08777 RRM_3: RNA binding mo 97.2 0.00064 1.4E-08 63.5 5.7 69 250-319 3-76 (105)
150 KOG0128 RNA-binding protein SA 97.1 0.0002 4.3E-09 85.4 1.8 148 163-311 571-735 (881)
151 KOG2193 IGF-II mRNA-binding pr 96.9 0.00082 1.8E-08 74.6 4.1 101 249-352 2-107 (584)
152 COG5175 MOT2 Transcriptional r 96.8 0.0034 7.4E-08 68.1 8.0 77 247-323 113-203 (480)
153 KOG1855 Predicted RNA-binding 96.5 0.0034 7.4E-08 70.2 5.2 66 243-308 226-309 (484)
154 KOG1855 Predicted RNA-binding 96.4 0.0029 6.3E-08 70.7 4.5 71 155-225 223-311 (484)
155 PF08777 RRM_3: RNA binding mo 96.4 0.0078 1.7E-07 56.2 6.7 59 164-223 2-60 (105)
156 COG5175 MOT2 Transcriptional r 96.4 0.0046 9.9E-08 67.1 5.6 87 162-257 113-213 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0083 1.8E-07 49.1 5.8 53 163-217 1-53 (53)
158 KOG1995 Conserved Zn-finger pr 96.4 0.0048 1E-07 67.9 5.5 78 160-237 63-153 (351)
159 KOG0115 RNA-binding protein p5 96.3 0.0057 1.2E-07 64.6 5.3 87 211-308 5-95 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0073 1.6E-07 49.4 4.7 52 249-302 2-53 (53)
161 KOG1995 Conserved Zn-finger pr 96.2 0.0038 8.2E-08 68.7 3.9 78 247-324 65-155 (351)
162 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.014 3E-07 54.1 6.1 72 248-321 6-90 (100)
163 KOG1295 Nonsense-mediated deca 96.0 0.0037 8E-08 69.4 2.6 73 663-736 5-79 (376)
164 KOG3152 TBP-binding protein, a 96.0 0.0042 9.1E-08 65.5 2.7 68 162-229 73-157 (278)
165 KOG4307 RNA binding protein RB 96.0 0.012 2.7E-07 69.0 6.5 71 163-233 867-942 (944)
166 KOG3152 TBP-binding protein, a 95.7 0.0049 1.1E-07 65.0 1.8 68 247-314 73-157 (278)
167 KOG0112 Large RNA-binding prot 95.7 0.022 4.8E-07 68.9 7.2 122 114-238 384-531 (975)
168 KOG4210 Nuclear localization s 95.6 0.0098 2.1E-07 65.1 4.0 76 163-239 184-265 (285)
169 KOG4849 mRNA cleavage factor I 95.4 0.024 5.3E-07 61.9 5.7 70 163-232 80-156 (498)
170 KOG2202 U2 snRNP splicing fact 95.2 0.01 2.2E-07 62.8 2.1 62 263-324 83-149 (260)
171 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.048 1E-06 50.6 5.8 73 162-236 5-90 (100)
172 KOG2314 Translation initiation 94.9 0.071 1.5E-06 61.7 7.8 73 246-318 56-139 (698)
173 KOG2314 Translation initiation 94.8 0.069 1.5E-06 61.8 7.3 70 163-232 58-138 (698)
174 PF07576 BRAP2: BRCA1-associat 94.4 0.23 5E-06 46.9 8.8 86 663-751 10-96 (110)
175 KOG0804 Cytoplasmic Zn-finger 94.4 0.13 2.8E-06 58.4 8.2 81 665-749 74-154 (493)
176 KOG2202 U2 snRNP splicing fact 94.2 0.022 4.8E-07 60.3 1.6 58 178-235 83-145 (260)
177 PF08952 DUF1866: Domain of un 94.0 0.16 3.4E-06 50.1 6.9 75 246-324 25-108 (146)
178 KOG1996 mRNA splicing factor [ 93.1 0.18 4E-06 54.3 6.3 61 262-322 300-366 (378)
179 PF15023 DUF4523: Protein of u 93.0 0.27 5.9E-06 48.1 6.7 80 154-236 77-160 (166)
180 KOG2591 c-Mpl binding protein, 92.8 0.18 3.9E-06 58.4 6.0 77 154-232 166-246 (684)
181 PF08952 DUF1866: Domain of un 92.7 0.21 4.7E-06 49.2 5.7 74 161-238 25-107 (146)
182 KOG1996 mRNA splicing factor [ 92.3 0.23 5.1E-06 53.5 5.6 74 163-236 281-365 (378)
183 KOG0129 Predicted RNA-binding 92.2 0.3 6.5E-06 56.4 6.9 63 157-219 364-432 (520)
184 KOG2135 Proteins containing th 92.1 0.21 4.4E-06 57.1 5.2 72 251-324 375-447 (526)
185 KOG2416 Acinus (induces apopto 91.7 0.12 2.6E-06 60.2 2.9 77 247-324 443-523 (718)
186 PF15023 DUF4523: Protein of u 91.6 0.58 1.3E-05 45.9 7.1 74 245-321 83-160 (166)
187 PF04847 Calcipressin: Calcipr 90.9 0.43 9.3E-06 49.1 5.8 63 261-324 8-72 (184)
188 KOG2591 c-Mpl binding protein, 89.4 0.61 1.3E-05 54.2 5.9 97 210-318 147-247 (684)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 89.4 0.37 8.1E-06 49.2 3.9 76 161-236 5-96 (176)
190 KOG4849 mRNA cleavage factor I 88.7 0.33 7.1E-06 53.4 3.0 73 248-320 80-159 (498)
191 KOG2416 Acinus (induces apopto 87.7 0.4 8.6E-06 56.1 3.1 67 157-224 438-505 (718)
192 PF08675 RNA_bind: RNA binding 87.5 1.8 3.9E-05 38.9 6.3 54 249-306 10-63 (87)
193 KOG4676 Splicing factor, argin 87.3 0.58 1.3E-05 52.4 3.9 71 249-320 8-86 (479)
194 PF10309 DUF2414: Protein of u 86.7 1.9 4.2E-05 36.6 5.8 54 248-305 5-62 (62)
195 KOG2068 MOT2 transcription fac 85.2 0.48 1E-05 52.3 2.0 78 247-324 76-164 (327)
196 KOG4285 Mitotic phosphoprotein 85.0 3.2 7E-05 45.4 7.9 73 248-323 197-270 (350)
197 PF08675 RNA_bind: RNA binding 84.0 3.6 7.8E-05 37.1 6.5 55 164-222 10-64 (87)
198 KOG0115 RNA-binding protein p5 82.8 1.3 2.9E-05 47.3 3.9 60 164-223 32-95 (275)
199 PF10309 DUF2414: Protein of u 82.7 3.7 8E-05 34.9 5.8 52 164-220 6-62 (62)
200 KOG2068 MOT2 transcription fac 82.6 0.73 1.6E-05 50.9 2.0 76 163-238 77-163 (327)
201 PF04847 Calcipressin: Calcipr 82.6 1.4 3.1E-05 45.3 4.1 61 176-237 8-70 (184)
202 KOG2135 Proteins containing th 81.5 0.73 1.6E-05 52.8 1.6 78 159-238 368-446 (526)
203 PF11767 SET_assoc: Histone ly 79.9 4.9 0.00011 34.6 5.7 56 258-317 10-65 (66)
204 KOG4285 Mitotic phosphoprotein 78.9 2.8 6E-05 45.8 4.8 63 163-228 197-259 (350)
205 PF14111 DUF4283: Domain of un 78.8 3.3 7.1E-05 40.3 5.0 108 174-282 28-139 (153)
206 KOG4574 RNA-binding protein (c 78.5 1.5 3.2E-05 53.5 2.8 73 250-323 300-374 (1007)
207 PF11767 SET_assoc: Histone ly 74.2 7.7 0.00017 33.4 5.3 55 174-232 11-65 (66)
208 PF03880 DbpA: DbpA RNA bindin 72.9 12 0.00025 32.6 6.3 59 258-320 11-74 (74)
209 PF07576 BRAP2: BRCA1-associat 72.7 24 0.00053 33.4 8.8 67 161-227 11-81 (110)
210 KOG2253 U1 snRNP complex, subu 72.5 2.5 5.3E-05 50.5 2.6 69 247-319 39-107 (668)
211 KOG4574 RNA-binding protein (c 69.9 2.4 5.1E-05 51.9 1.7 73 165-238 300-374 (1007)
212 KOG2253 U1 snRNP complex, subu 65.9 4.4 9.5E-05 48.5 2.8 71 160-234 37-107 (668)
213 PF10567 Nab6_mRNP_bdg: RNA-re 64.1 75 0.0016 35.1 11.4 146 161-307 13-213 (309)
214 PF07292 NID: Nmi/IFP 35 domai 61.4 5.5 0.00012 36.2 2.0 68 203-270 1-74 (88)
215 KOG4483 Uncharacterized conser 59.6 16 0.00035 41.4 5.6 55 163-218 391-445 (528)
216 KOG4019 Calcineurin-mediated s 56.9 15 0.00032 37.8 4.3 74 250-324 12-91 (193)
217 PF03880 DbpA: DbpA RNA bindin 53.2 38 0.00082 29.4 5.8 59 173-235 11-74 (74)
218 KOG2318 Uncharacterized conser 44.1 1.3E+02 0.0029 36.0 9.9 130 158-320 169-305 (650)
219 KOG2891 Surface glycoprotein [ 41.5 21 0.00046 38.7 2.8 74 249-322 150-267 (445)
220 KOG4483 Uncharacterized conser 37.8 66 0.0014 36.8 6.0 55 248-303 391-445 (528)
221 KOG0804 Cytoplasmic Zn-finger 36.1 1.1E+02 0.0025 35.5 7.6 64 163-226 74-141 (493)
222 PRK14548 50S ribosomal protein 32.9 74 0.0016 28.8 4.5 56 250-305 22-81 (84)
223 KOG2891 Surface glycoprotein [ 32.7 19 0.0004 39.1 0.7 62 164-225 150-247 (445)
224 KOG4410 5-formyltetrahydrofola 31.3 89 0.0019 34.3 5.5 48 163-211 330-378 (396)
225 KOG4019 Calcineurin-mediated s 31.0 34 0.00073 35.2 2.2 75 163-238 10-90 (193)
226 TIGR03636 L23_arch archaeal ri 30.2 92 0.002 27.7 4.6 56 250-305 15-74 (77)
227 PRK14548 50S ribosomal protein 25.7 1.5E+02 0.0034 26.8 5.3 55 166-220 23-81 (84)
228 COG5105 MIH1 Mitotic inducer, 23.0 2E+02 0.0043 32.3 6.4 97 676-780 243-344 (427)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-75 Score=645.35 Aligned_cols=507 Identities=52% Similarity=0.794 Sum_probs=384.2
Q ss_pred cccceeecCCCCccccCCcccccc------------cCCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec
Q 003329 129 LEDYDIFGSGGGMELEGEPQESLS------------MREHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA 196 (829)
Q Consensus 129 veev~vf~~~gG~~l~~~~~~~~~------------~ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t 196 (829)
++++++|...|||+++.+...... +.+++..+ +++ || .+|-.+|++|+
T Consensus 1 ~~d~~lf~~~G~~el~~~~~~~~~~~~~~~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~-------- 60 (549)
T KOG4660|consen 1 LEDCDLFSSGGGMELDADSFDNLSVRNSDRNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN-------- 60 (549)
T ss_pred CCccccccCCCCCCcccccccchhhcccccCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC--------
Confidence 368899999999999977654421 25666666 555 76 78888888881
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeE
Q 003329 197 CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 276 (829)
Q Consensus 197 ~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~ 276 (829)
+++. .+++.+++.++++|+|.|||.+|++++|+.+|+.||+|+
T Consensus 61 -------------------------------~p~~------~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir 103 (549)
T KOG4660|consen 61 -------------------------------KPLR------PDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR 103 (549)
T ss_pred -------------------------------CCCC------cCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchh
Confidence 1111 155677788999999999999999999999999999999
Q ss_pred EEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcccchhccccchhhcHHHHHHHHhhcCCCCCCC
Q 003329 277 EIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNS 356 (829)
Q Consensus 277 ~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~rr~~~~ql~~~~~~~~l~~~f~~~GsP~a~s 356 (829)
+|+.+..++|.+||+|+|+++|++|+++|++.+|.|++|+ ++.+.++..+-+.. ..+..++++|.+++
T Consensus 104 ~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~--------~~~~~~~~~p~a~s 171 (549)
T KOG4660|consen 104 EIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG--------TSFLNHFGSPLANS 171 (549)
T ss_pred hhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc--------chhhhhccchhhcC
Confidence 9999999999999999999999999999999999999998 77777666554443 56788999999999
Q ss_pred CCCCCccCCCCCCCCccccccCCCCCCCCCCCcCCCCCCCccccCCCCCccccccccCcccCcccchhhhhccccccCCC
Q 003329 357 PPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRGSLMEHALTNTISANGA 436 (829)
Q Consensus 357 pP~~~~~~gsP~~~~~~q~~~~~~~~~~~sP~~~~~~~g~~s~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (829)
+|+.|.+ .+.++.++|..... ++...++ +-....+...+.-.| |.|.+ .
T Consensus 172 ~pgg~~~---------------~~~~g~l~P~~s~~-------~~~~~~~-~~~~~~~~~~~~~~h--q~~~~------~ 220 (549)
T KOG4660|consen 172 PPGGWPR---------------GQLFGMLSPTRSSI-------LLEHISS-VDGSSPGRETPLLNH--QRFVE------F 220 (549)
T ss_pred CCCCCcC---------------Ccceeeeccchhhh-------hhhcchh-ccCccccccccchhh--hhhhh------h
Confidence 9999961 12334466654332 2222111 111111122222233 33332 1
Q ss_pred ccccCCCCCCCcCCccCCccCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCCCCcccCCCCCCCCCCCCccCCCCCCC
Q 003329 437 SFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMGHPFSSNGKIHGLPYSG 516 (829)
Q Consensus 437 ~~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 516 (829)
...-+|+++++.+ |..+++..++.|++++--+| +++....
T Consensus 221 ~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~---------------------n~~~~~r--------- 260 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW---------------------NPFPSRR--------- 260 (549)
T ss_pred ccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------CCccccc---------
Confidence 1224567777622 56666777888888874444 1221111
Q ss_pred CCCCCCCCccccCcCCCCCCCccccccCCCCCCCCCcCCCcccccCCCCCCCCCccccccCCCcCCCCC-ccCCCCCCCC
Q 003329 517 RQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRASVNPG-ITVPRNLSDN 595 (829)
Q Consensus 517 ~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~n~~~~ 595 (829)
........+++||||+||+. .+....+++++.+..+++.++.+. ..+-| .+..+++++.
T Consensus 261 ~~~~~~~~~~~~hi~~~Ps~------------------~~l~~~~~~~f~~~s~~~~~~~~~--~~n~g~~~~t~~~~e~ 320 (549)
T KOG4660|consen 261 QRQNSSSSHYEHHIGSAPSM------------------HHLLSRISVGFNGGSGALEMNSNG--QANQGFLTKTGNVTEF 320 (549)
T ss_pred cccccCcccccCccCCCccc------------------ccccccCccccCCCCCCccccccc--cCCCCccccCcccccc
Confidence 11223345679999999962 122234566777777776554332 23334 3578899998
Q ss_pred CCC-ccccCCCCCCCcccCCCCCCCCCCCCcccccc---ccccccccCCCCCccccccccccchhhHhcCCCcceeEEee
Q 003329 596 GSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIK 671 (829)
Q Consensus 596 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---r~r~rr~~~~~~~~~~~~~~~~~~~~~i~~g~d~rTTvMir 671 (829)
.+. +++.+.++..+.|-+++.+. ...+...+ ..+.||.+. ...+ ...+++.+|+.+|.+|+|.|||+|||
T Consensus 321 ~s~n~~~e~~~rv~~~f~~~~~~~----~~~~~~~~~~~~~~~~Rtt~-~i~n-i~n~~~~~dl~~Ildge~~rtt~~ik 394 (549)
T KOG4660|consen 321 NSKNVGMESSPRVPKNFEGRRSYT----SQNDYPVELILNYRDRRTTV-MIKN-IPNKYGQLDLLRILDGECPRTTLMIK 394 (549)
T ss_pred cCCCccccccCCCCcccccccccc----cccccccccccccccchhhh-hhhc-cccchhHHHHHHHHhCcCchhhhHhh
Confidence 886 99999999999999888653 23344444 677788876 3333 34899999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHhhCCCcccEEEeeccccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEEEEeeecc
Q 003329 672 NIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQ 751 (829)
Q Consensus 672 NIPnk~t~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~v~~A~iQ 751 (829)
|||||||++||++. ||.++|+||||||||||+|+||||||||||++|+++++||++|||++|++|+|+|||+|+|||||
T Consensus 395 nipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 395 NIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred ccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhccCcCCCCCCCccceEEcCCCCCCCCccccccCCCCCccccccCCCCC
Q 003329 752 GRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVTQEQLNSNSVNFQVCPSNGS 808 (829)
Q Consensus 752 G~~~l~~~f~~s~~~~~~~~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (829)
||++|++|||||++|||++.|+|++|++ +..|. +|++|... +++.+....+
T Consensus 474 Gk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~---~~~~p~~~-~~~a~~~~s~ 524 (549)
T KOG4660|consen 474 GKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR---EEPEPVKL-NQDAGAGHST 524 (549)
T ss_pred chHHHHHHhhcccccccchhcCceEecC--ccccc---ccCccccc-cccCCCCccc
Confidence 9999999999999999999999999998 67777 99999887 8776655443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=6.4e-46 Score=336.11 Aligned_cols=97 Identities=67% Similarity=1.202 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeccccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003329 665 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 744 (829)
Q Consensus 665 rTTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 744 (829)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||++++++.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 003329 745 LAYARIQGRAALVAHFQ 761 (829)
Q Consensus 745 v~~A~iQG~~~l~~~f~ 761 (829)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=264.13 Aligned_cols=213 Identities=25% Similarity=0.423 Sum_probs=179.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
+...+.|.|..||..+|++|||.||...|+|++|+ +++.+.||+||.|.++++|++|+..|||.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45578999999999999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 235 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 235 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
++|.. +.++..+|||++||..+|..||+++|++||.|...|+ ++.+||.|||+|+.+.+|++||+.|||.+
T Consensus 118 ARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 98754 5567889999999999999999999999999988764 67899999999999999999999999999
Q ss_pred eCC--cEEEEEecCCCcccchhccccchhhcHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccc------cCCCC
Q 003329 310 IAG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTI------SKSPN 381 (829)
Q Consensus 310 i~G--r~I~V~~a~~~~~rr~~~~ql~~~~~~~~l~~~f~~~GsP~a~spP~~~~~~gsP~~~~~~q~~------~~~~~ 381 (829)
..| .+|.|+|+..+..+...... .+-|++|. +++++|+++ +.|++ +....
T Consensus 194 P~g~tepItVKFannPsq~t~~a~l-------------s~ly~sp~--------rr~~Gp~hh-~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALL-------------SQLYQSPA--------RRYGGPMHH-QAQRFRLDNLLNPHAA 251 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhh-------------HHhhcCcc--------ccCCCcccc-hhhhhccccccchhhh
Confidence 888 68999999887654321110 11233332 568899998 55554 23334
Q ss_pred CCCCCCCcCCCCCCCcc
Q 003329 382 FRNMSPTTSNHMPGLAS 398 (829)
Q Consensus 382 ~~~~sP~~~~~~~g~~s 398 (829)
..+|||++.+++.++++
T Consensus 252 ~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAG 268 (360)
T ss_pred hccCCCccccccceeee
Confidence 56899999888877754
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=9.6e-28 Score=265.20 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.8
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999984 56799999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++..+|||||+|.+.++|++||+.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 7543 334578999999999999999999999999998875 3457899999999999999999999999998
Q ss_pred C--cEEEEEecCCCc
Q 003329 312 G--KRIKLEPSRPGG 324 (829)
Q Consensus 312 G--r~I~V~~a~~~~ 324 (829)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678888887654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.3e-27 Score=262.12 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=176.5
Q ss_pred ccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-CccccCCc---------------cccccc----
Q 003329 94 MNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-GMELEGEP---------------QESLSM---- 153 (829)
Q Consensus 94 e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-G~~l~~~~---------------~~~~~~---- 153 (829)
.+++++..||.+ +++.+|+.+|..+|+|.+|+|+.+.. |......+ ..+..+
T Consensus 3 ~~~l~V~nLp~~--------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQT--------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 456777888988 89999999999999999999988632 22211000 000000
Q ss_pred -----CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCC
Q 003329 154 -----REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNK 223 (829)
Q Consensus 154 -----ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~ 223 (829)
..........++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|+|.
T Consensus 75 i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 75 IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 111222335678999999999999999999999999988874 4568999999999999999999999999
Q ss_pred cccc--ccccccccCCCCCCCC----------------C-----------------------------------------
Q 003329 224 PLRR--RKLDIHFSIPKDNPSD----------------K----------------------------------------- 244 (829)
Q Consensus 224 ~l~g--r~L~V~~a~pk~~~~~----------------~----------------------------------------- 244 (829)
.+.+ ++|.|.|+........ .
T Consensus 155 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHA 234 (352)
T ss_pred ccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcc
Confidence 9876 5677777643220000 0
Q ss_pred -------------------------------CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEE
Q 003329 245 -------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHK 288 (829)
Q Consensus 245 -------------------------------~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~a 288 (829)
.....+|||+|||+++++++|+++|++||.|.+|++ ++.++|||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~a 314 (352)
T TIGR01661 235 VAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYG 314 (352)
T ss_pred cccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceE
Confidence 000125999999999999999999999999999986 56789999
Q ss_pred EEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 289 FIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 289 FVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
||+|.+.++|.+||..|||..|.||+|+|.|+..+..
T Consensus 315 FV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 315 FVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999987764
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=2.5e-27 Score=261.94 Aligned_cols=163 Identities=23% Similarity=0.420 Sum_probs=146.4
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4556899999999999999999999999999999984 56789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003329 234 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 308 (829)
Q Consensus 234 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~ 308 (829)
|+.+.. ......+|||.|||.++|+++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+.
T Consensus 183 ~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred cccccc----cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 987643 2334678999999999999999999999999999875 4566899999999999999999999999
Q ss_pred eeCC--cEEEEEecCCCcc
Q 003329 309 DIAG--KRIKLEPSRPGGA 325 (829)
Q Consensus 309 ~i~G--r~I~V~~a~~~~~ 325 (829)
.+.| ++|+|.+++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 8876 7899999886543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=5.3e-27 Score=275.70 Aligned_cols=268 Identities=19% Similarity=0.280 Sum_probs=205.2
Q ss_pred ceeecCCCccccccCCCccccccccccccccccccccCCCCCCCCccCCcccccCCCCCCCCCccccccccccCCCCCCh
Q 003329 27 SCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLPDDE 106 (829)
Q Consensus 27 t~~~~~~a~~~~~~~d~~~Fs~~l~~i~~~k~~~~~~~~~~~~~d~~~~~~k~~~~eee~~~~~ee~e~~~i~N~LP~d~ 106 (829)
+|.-+++|.+|++.++...+-|+-+.|.-.+.. .. ... ......++..||.+
T Consensus 48 ~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~-------------~~--~~~------------~~~~~vfV~nLp~~- 99 (562)
T TIGR01628 48 NFQNPADAERALETMNFKRLGGKPIRIMWSQRD-------------PS--LRR------------SGVGNIFVKNLDKS- 99 (562)
T ss_pred EECCHHHHHHHHHHhCCCEECCeeEEeeccccc-------------cc--ccc------------cCCCceEEcCCCcc-
Confidence 466677999999999988776665555332110 00 100 01224556667777
Q ss_pred HHHhhccCCchhhccCCCCCCCcccceeecCCCCcccc-----CCcc----------c-----c--cccC------CC-C
Q 003329 107 DELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELE-----GEPQ----------E-----S--LSMR------EH-P 157 (829)
Q Consensus 107 del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l~-----~~~~----------~-----~--~~~g------e~-~ 157 (829)
+++.+|..+|..+|.+.+|++..+..|.... .... . . +.++ +. .
T Consensus 100 -------~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~ 172 (562)
T TIGR01628 100 -------VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA 172 (562)
T ss_pred -------CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccc
Confidence 7899999999999999999998875442211 0000 0 0 0000 00 1
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc----ccc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRK 229 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~----gr~ 229 (829)
......++|||+|||.++|+++|+++|++||+|.++++ .++++|||||+|.+.++|.+|++.|++..+. |+.
T Consensus 173 ~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~ 252 (562)
T TIGR01628 173 APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKK 252 (562)
T ss_pred ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEeccccccee
Confidence 12344678999999999999999999999999999884 4578999999999999999999999999999 999
Q ss_pred ccccccCCCCCCC--------------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEE
Q 003329 230 LDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIE 291 (829)
Q Consensus 230 L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVe 291 (829)
|.|.++..+.... .......+|||+||+.++|+++|+++|++||.|++|++ ++.++|||||+
T Consensus 253 l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~ 332 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVC 332 (562)
T ss_pred eEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEE
Confidence 9999886654321 01223468999999999999999999999999999976 46779999999
Q ss_pred EcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcccchh
Q 003329 292 FYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 329 (829)
Q Consensus 292 F~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~rr~~ 329 (829)
|.+.++|.+|++.|||+.+.|++|.|.++.++..++..
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~ 370 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAH 370 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHH
Confidence 99999999999999999999999999999988766543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.4e-26 Score=272.17 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=197.9
Q ss_pred cccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-CccccCCc---c------------ccc-------c-
Q 003329 97 AIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-GMELEGEP---Q------------ESL-------S- 152 (829)
Q Consensus 97 ~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-G~~l~~~~---~------------~~~-------~- 152 (829)
..+..||.+ +++.+|..+|..+|.|.+|+|..+.. +..+...+ . ... .
T Consensus 3 l~VgnLp~~--------vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i 74 (562)
T TIGR01628 3 LYVGDLDPD--------VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRI 74 (562)
T ss_pred EEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEe
Confidence 345567767 79999999999999999999988654 22211100 0 000 0
Q ss_pred -c--CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcc
Q 003329 153 -M--REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL 225 (829)
Q Consensus 153 -~--ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l 225 (829)
+ .+........++|||+|||.++++++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+
T Consensus 75 ~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 75 MWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 0 111122233568999999999999999999999999999884 457899999999999999999999999999
Q ss_pred ccccccccccCCCCCCC-CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHH
Q 003329 226 RRRKLDIHFSIPKDNPS-DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEA 300 (829)
Q Consensus 226 ~gr~L~V~~a~pk~~~~-~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~k 300 (829)
.++.|.|....++.... .......+|||+||+.++|+++|+++|+.||.|.++++ .++.+|||||+|.+.++|.+
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~ 234 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAK 234 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHH
Confidence 99999998766554331 22334578999999999999999999999999999876 34678999999999999999
Q ss_pred HHHHhCCCeeC----CcEEEEEecCCCccc----------------------chhccccchhhcHHHHHHHHhhcCC
Q 003329 301 ALKSLNRSDIA----GKRIKLEPSRPGGAR----------------------RNLMLQLNQELEQDESRILQHQVGS 351 (829)
Q Consensus 301 Al~~LnG~~i~----Gr~I~V~~a~~~~~r----------------------r~~~~ql~~~~~~~~l~~~f~~~Gs 351 (829)
|++.|+|..+. |+.|.|.++..+..+ ..++.++...+++++++.+|.+||.
T Consensus 235 Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 235 AVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred HHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 99999999999 999999988766544 2357778888999999999999984
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.7e-26 Score=233.01 Aligned_cols=217 Identities=17% Similarity=0.314 Sum_probs=176.6
Q ss_pred ccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCccccCCcccccccCCCCCCCCCCcEEEEeCCCC
Q 003329 94 MNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMREHPYGEHPSRTLFVRNINS 173 (829)
Q Consensus 94 e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~~~~~~~ge~~~~e~~srtLfV~NLP~ 173 (829)
++...+||-++- +|.=+-.||+++|.+..|+++.++-++....... ..........-.+||+.|..
T Consensus 7 rtlyvgnld~~v---------te~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~-----nQsk~t~~~hfhvfvgdls~ 72 (321)
T KOG0148|consen 7 RTLYVGNLDSTV---------TEDFIATLFNQIGSVTKTKVIFDELKVNWATAPG-----NQSKPTSNQHFHVFVGDLSP 72 (321)
T ss_pred ceEEeeccChhh---------HHHHHHHHHHhccccccceeehhhhccccccCcc-----cCCCCccccceeEEehhcch
Confidence 344556655544 5555667899999999999998754433332221 01111112244799999999
Q ss_pred CCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCC-----
Q 003329 174 NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD----- 243 (829)
Q Consensus 174 ~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~----- 243 (829)
.++-++||+.|.+||+|.++++ +.|+|||+||.|.+.++|++||..|+|+.|.+|.|+-.|+..|.....
T Consensus 73 eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~lt 152 (321)
T KOG0148|consen 73 EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLT 152 (321)
T ss_pred hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCcc
Confidence 9999999999999999998884 789999999999999999999999999999999999999976642211
Q ss_pred -------CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 244 -------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 244 -------~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
....++++||+|++.-+||++|++.|++||.|.+||+.+ -+||+||+|++.|.|.+||..+|+++|.|+.++
T Consensus 153 fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 153 FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 123457999999999999999999999999999999974 579999999999999999999999999999999
Q ss_pred EEecCCCcc
Q 003329 317 LEPSRPGGA 325 (829)
Q Consensus 317 V~~a~~~~~ 325 (829)
|.|.+....
T Consensus 232 CsWGKe~~~ 240 (321)
T KOG0148|consen 232 CSWGKEGDD 240 (321)
T ss_pred EeccccCCC
Confidence 999887654
No 10
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=6.1e-26 Score=257.98 Aligned_cols=306 Identities=20% Similarity=0.232 Sum_probs=233.4
Q ss_pred CCceeecCCCccccccCCCccccccccccccccccccccCCCCCCCCccCCcccccCCCCCCCCCccccccccccCCCCC
Q 003329 25 GGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLPD 104 (829)
Q Consensus 25 ~~t~~~~~~a~~~~~~~d~~~Fs~~l~~i~~~k~~~~~~~~~~~~~d~~~~~~k~~~~eee~~~~~ee~e~~~i~N~LP~ 104 (829)
-.+|++|++|+++|.++|+.+|+|||+||++.+.+.+..+ ..+.....|++ +++++.+.....-..||.|..
T Consensus 250 ~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~----~~~~~~~~~k~----~ke~~rk~~~~~~~~wn~l~~ 321 (725)
T KOG0110|consen 250 FVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKE----DASELGSDYKK----EKELKRKAASASFHSWNTLFM 321 (725)
T ss_pred HHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhh----hHhhcCCcHHH----HHHhccccchhcceecccccc
Confidence 3579999999999999999999999999999887653331 22222344766 778888888888899999999
Q ss_pred ChHHHhhccCCchhhccCC------------CCCCC---cccceeecCCCCccccCCcccccccCCCCCCCCCCcEEEEe
Q 003329 105 DEDELLAGIMDDFDLRGLP------------SSLED---LEDYDIFGSGGGMELEGEPQESLSMREHPYGEHPSRTLFVR 169 (829)
Q Consensus 105 d~del~~~i~de~~l~~lf------------~~lge---veev~vf~~~gG~~l~~~~~~~~~~ge~~~~e~~srtLfV~ 169 (829)
++++++..++.++++.+-. .+|++ +.++.-+....|+.++...+ .++..+.|+|+
T Consensus 322 ~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~----------~~rs~~vil~k 391 (725)
T KOG0110|consen 322 GANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQ----------AERSDTVILVK 391 (725)
T ss_pred cccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchh----------hhhhcceeeec
Confidence 9999998888888876431 11222 11111111222333332211 56678999999
Q ss_pred CCCCCCcHHHHHHHhhccCCEEEEEecCCcce-EEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCC-------
Q 003329 170 NINSNVEDSELRALFEQYGDIRTLYTACKHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP------- 241 (829)
Q Consensus 170 NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG-~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~------- 241 (829)
|||..+..++|..+|..||+|..+.+ . ..| .++|+|.++.+|++|++.|.+..+...++++.|+......
T Consensus 392 Nlpa~t~~~elt~~F~~fG~i~rvll-p-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~ 469 (725)
T KOG0110|consen 392 NLPAGTLSEELTEAFLRFGEIGRVLL-P-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADD 469 (725)
T ss_pred cCccccccHHHHHHhhcccccceeec-C-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccc
Confidence 99999999999999999999999943 4 444 4999999999999999999999999999998886311000
Q ss_pred -------------CC------------CC-------------CCc-ccceecccCCCCCHHHHHHHhcccCCeEEEEeCC
Q 003329 242 -------------SD------------KD-------------LNQ-GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP 282 (829)
Q Consensus 242 -------------~~------------~~-------------~~~-~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~ 282 (829)
.+ .+ ... .+|||+||++++|.++|..+|.++|.|.++.|..
T Consensus 470 ~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k 549 (725)
T KOG0110|consen 470 LSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK 549 (725)
T ss_pred cccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEec
Confidence 00 00 011 2499999999999999999999999999997642
Q ss_pred C--------cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC--------CCcc-----cchhccccchhhcHHH
Q 003329 283 H--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR--------PGGA-----RRNLMLQLNQELEQDE 341 (829)
Q Consensus 283 ~--------srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~--------~~~~-----rr~~~~ql~~~~~~~~ 341 (829)
+ ++|||||+|++.++|+.|++.|+|+.|+|+.|.|+++. ++.. .+.++++++-+.+..+
T Consensus 550 kkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rE 629 (725)
T KOG0110|consen 550 KKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKRE 629 (725)
T ss_pred cccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHH
Confidence 2 35999999999999999999999999999999999998 1111 1336777777778888
Q ss_pred HHHHHhhcC
Q 003329 342 SRILQHQVG 350 (829)
Q Consensus 342 l~~~f~~~G 350 (829)
++..|..||
T Consensus 630 Vr~LF~aFG 638 (725)
T KOG0110|consen 630 VRKLFTAFG 638 (725)
T ss_pred HHHHHhccc
Confidence 888888886
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3e-25 Score=226.63 Aligned_cols=226 Identities=21% Similarity=0.324 Sum_probs=182.8
Q ss_pred ccccccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-CccccC------Ccc---------ccc--
Q 003329 90 LEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-GMELEG------EPQ---------ESL-- 151 (829)
Q Consensus 90 ~ee~e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-G~~l~~------~~~---------~~~-- 151 (829)
.+|..+++|+|+||.. +++++++.+|..+||+|+|++++++- |-.+.. +.+ .++
T Consensus 37 t~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL 108 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL 108 (360)
T ss_pred cCcccceeeeeecccc--------cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee
Confidence 4567789999999999 99999999999999999999999842 222221 111 111
Q ss_pred -------ccCCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHH
Q 003329 152 -------SMREHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRA 219 (829)
Q Consensus 152 -------~~ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~ 219 (829)
++.....+......|||.+||..+|..||.++|++||.|..-+ +++.+||.+||.|....+|+.||+.
T Consensus 109 Q~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 109 QNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred ccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 1234444455567899999999999999999999999987655 4788999999999999999999999
Q ss_pred hcCCcccc--ccccccccCCCCCCC-------------C-----------------------------------------
Q 003329 220 LQNKPLRR--RKLDIHFSIPKDNPS-------------D----------------------------------------- 243 (829)
Q Consensus 220 Lng~~l~g--r~L~V~~a~pk~~~~-------------~----------------------------------------- 243 (829)
|||..-.| .+|.|+|+....... .
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 99988765 478888864221100 0
Q ss_pred -----CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc
Q 003329 244 -----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 313 (829)
Q Consensus 244 -----~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr 313 (829)
......+|||.||.++.+|.-|+++|++||.|..|++ +.+.||||||.+.+.++|.-||..|||..+++|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 0001148999999999999999999999999999875 467899999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 003329 314 RIKLEPSRPG 323 (829)
Q Consensus 314 ~I~V~~a~~~ 323 (829)
.|.|.|...+
T Consensus 349 vLQVsFKtnk 358 (360)
T KOG0145|consen 349 VLQVSFKTNK 358 (360)
T ss_pred EEEEEEecCC
Confidence 9999997654
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=6.9e-25 Score=254.83 Aligned_cols=164 Identities=20% Similarity=0.398 Sum_probs=144.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999984 6789999999999999999999999999999999999875
Q ss_pred CCCCCCC-------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003329 236 IPKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 303 (829)
Q Consensus 236 ~pk~~~~-------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~ 303 (829)
....... .......+|||+||++++++++|+++|+.||.|+++++ +++++|||||+|.+.++|.+||.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4321110 11123468999999999999999999999999999976 34679999999999999999999
Q ss_pred HhCCCeeCCcEEEEEecCCCc
Q 003329 304 SLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 304 ~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
.||+.+|+|+.|+|.++.++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999887654
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.3e-24 Score=251.08 Aligned_cols=217 Identities=21% Similarity=0.266 Sum_probs=166.4
Q ss_pred ccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCccccCCcc-----------------ccc--c--cC--
Q 003329 98 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQ-----------------ESL--S--MR-- 154 (829)
Q Consensus 98 i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~~-----------------~~~--~--~g-- 154 (829)
++..||.+ +++.+|.++|..+|.|.++.++...+-.-++.... .+. . +.
T Consensus 6 ~V~nLp~~--------~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 6 HVRNLPQD--------VVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred EEcCCCCC--------CCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 34556667 79999999999999999999887643111111000 000 0 00
Q ss_pred -C--CC-------CCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecC-CcceEEEEEEcCHHHHHHHHHHhcCC
Q 003329 155 -E--HP-------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNK 223 (829)
Q Consensus 155 -e--~~-------~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~-kskG~AFV~F~d~e~A~~Ai~~Lng~ 223 (829)
+ .. .......+|||+||++.+|+++|+++|++||+|.+|++.. +.+|+|||+|.+.++|.+|++.|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~ 157 (481)
T TIGR01649 78 QEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGA 157 (481)
T ss_pred cccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCC
Confidence 0 00 0111234799999999999999999999999999998633 34479999999999999999999999
Q ss_pred cccc--ccccccccCCCCC-------CC----------C-----------------------------------------
Q 003329 224 PLRR--RKLDIHFSIPKDN-------PS----------D----------------------------------------- 243 (829)
Q Consensus 224 ~l~g--r~L~V~~a~pk~~-------~~----------~----------------------------------------- 243 (829)
.|.+ +.|+|.|+++..- .. +
T Consensus 158 ~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (481)
T TIGR01649 158 DIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAG 237 (481)
T ss_pred cccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccc
Confidence 9975 4777777654210 00 0
Q ss_pred ---------------------------------CCCCcccceecccCC-CCCHHHHHHHhcccCCeEEEEeCCCcccEEE
Q 003329 244 ---------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKF 289 (829)
Q Consensus 244 ---------------------------------~~~~~~tLfV~NLp~-~vTeedL~~iFs~fG~I~~vrit~~srG~aF 289 (829)
......+|||+||+. .+|+++|+++|+.||.|.+|++...++||||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~af 317 (481)
T TIGR01649 238 GDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETAL 317 (481)
T ss_pred cccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEE
Confidence 001235899999997 6999999999999999999998766789999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 290 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 290 VeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
|+|.+.++|.+||..|||..|.|++|+|++++.
T Consensus 318 V~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 318 IEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 999999999999999999999999999998754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.2e-24 Score=252.36 Aligned_cols=222 Identities=20% Similarity=0.277 Sum_probs=176.7
Q ss_pred cccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCccccCCcc---------------ccccc--CC
Q 003329 93 VMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQ---------------ESLSM--RE 155 (829)
Q Consensus 93 ~e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~~---------------~~~~~--ge 155 (829)
...+.++..||.+ +++.+|..+|..+|.|.+++|+.+..|......+. ....+ +.
T Consensus 57 ~~~~lFVgnLp~~--------~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr 128 (578)
T TIGR01648 57 RGCEVFVGKIPRD--------LYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR 128 (578)
T ss_pred CCCEEEeCCCCCC--------CCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence 4467788888888 89999999999999999999988754443221110 00000 00
Q ss_pred C--CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCC-EEEEEe------cCCcceEEEEEEcCHHHHHHHHHHhcC--Cc
Q 003329 156 H--PYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQN--KP 224 (829)
Q Consensus 156 ~--~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~-I~sv~~------t~kskG~AFV~F~d~e~A~~Ai~~Lng--~~ 224 (829)
. .......++|||+|||.++++++|+++|+++++ |..+.+ ..+++|||||+|.+.++|.+|++.|+. ..
T Consensus 129 ~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 129 LLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred cccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 0 011234689999999999999999999999964 333322 356899999999999999999998865 35
Q ss_pred cccccccccccCCCCCCCCCC-CCcccceecccCCCCCHHHHHHHhccc--CCeEEEEeCCCcccEEEEEEcCHHHHHHH
Q 003329 225 LRRRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAA 301 (829)
Q Consensus 225 l~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~vTeedL~~iFs~f--G~I~~vrit~~srG~aFVeF~~~e~A~kA 301 (829)
+.++.|.|.|+.++.....+. ...++|||+||+.++|+++|+++|++| |+|++|++. ++||||+|.+.++|++|
T Consensus 209 l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHH
Confidence 789999999998865443322 234789999999999999999999999 999999864 67999999999999999
Q ss_pred HHHhCCCeeCCcEEEEEecCCCcc
Q 003329 302 LKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 302 l~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
++.|||.+|.|+.|+|+++++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999988653
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.5e-23 Score=226.17 Aligned_cols=225 Identities=20% Similarity=0.319 Sum_probs=182.4
Q ss_pred ccccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecC-CCCccccCCcc------------cccccCCC--
Q 003329 92 GVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGS-GGGMELEGEPQ------------ESLSMREH-- 156 (829)
Q Consensus 92 e~e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~-~gG~~l~~~~~------------~~~~~ge~-- 156 (829)
......++.-||.| +-|.+|..+|...|++-|+++|.+ ..|-...-.+. ..++.-|.
T Consensus 81 ~~G~EVfvGkIPrD--------~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRD--------VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCceEEecCCCcc--------ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 45566788888988 899999999999999999999998 33322211100 00000000
Q ss_pred -----CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCC-EEEEEe------cCCcceEEEEEEcCHHHHHHHHHHhcC--
Q 003329 157 -----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQN-- 222 (829)
Q Consensus 157 -----~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~-I~sv~~------t~kskG~AFV~F~d~e~A~~Ai~~Lng-- 222 (829)
-.....+++|||+|||.+.+++||++.|++.++ |..|.+ +.+.||||||+|++...|..|.++|-.
T Consensus 153 GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 153 GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 011245789999999999999999999999986 555542 578999999999999999999998854
Q ss_pred CccccccccccccCCCCCCCCCCC-CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHH
Q 003329 223 KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 301 (829)
Q Consensus 223 ~~l~gr~L~V~~a~pk~~~~~~~~-~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kA 301 (829)
..+.|..+.|.||.|...+..+.. .-+.|||+||+.++|++.|+++|+.||.|..|+.. +.||||.|.++++|.+|
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkA 309 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKA 309 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHH
Confidence 456799999999999887665433 34789999999999999999999999999999864 66999999999999999
Q ss_pred HHHhCCCeeCCcEEEEEecCCCcccc
Q 003329 302 LKSLNRSDIAGKRIKLEPSRPGGARR 327 (829)
Q Consensus 302 l~~LnG~~i~Gr~I~V~~a~~~~~rr 327 (829)
++.|||++|+|..|.|.+|+|...++
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999999999987654
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.6e-23 Score=238.22 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=143.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|..+.|++|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4566899999999999999999999999999999984 56789999999999999999997 99999999999998
Q ss_pred ccCCCCCCCC--------CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHH
Q 003329 234 FSIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 300 (829)
Q Consensus 234 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~k 300 (829)
++........ ......+|||+|||..+|+++|+++|++||.|..|++. ++++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 11224789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCCeeCCcEEEEEecCC
Q 003329 301 ALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 301 Al~~LnG~~i~Gr~I~V~~a~~ 322 (829)
|++.|+|..|.|++|+|.++..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.1e-23 Score=239.67 Aligned_cols=164 Identities=25% Similarity=0.327 Sum_probs=141.5
Q ss_pred CCCCcEEEEeCCCC-CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 160 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 160 e~~srtLfV~NLP~-~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
..++++|||+|||+ .+|+++|+++|+.||+|.+|++....+|||||+|.+.++|++|++.|+|..|.|++|+|.++...
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 34678999999998 69999999999999999999976666899999999999999999999999999999999987543
Q ss_pred CCCCC------------C---------------------CCCcccceecccCCCCCHHHHHHHhcccCC--eEEEEeCCC
Q 003329 239 DNPSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH 283 (829)
Q Consensus 239 ~~~~~------------~---------------------~~~~~tLfV~NLp~~vTeedL~~iFs~fG~--I~~vrit~~ 283 (829)
..... + .....+|||+|||.++|+++|+++|+.||. |+.|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 0 012358999999999999999999999998 888887443
Q ss_pred ---cccEEEEEEcCHHHHHHHHHHhCCCeeCCcE------EEEEecCCC
Q 003329 284 ---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 323 (829)
Q Consensus 284 ---srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~------I~V~~a~~~ 323 (829)
++++|||+|.+.++|.+||..|||+.|.|+. |+|.|+++.
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999764
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=2.6e-22 Score=233.10 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=154.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc-cccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~V~~a~ 236 (829)
..++|||+|||.+++|++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++..+. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999984 5789999999999999999999999999986 7777777653
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCC-eEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCC--
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 307 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~-I~~vri------t~~srG~aFVeF~~~e~A~kAl~~LnG-- 307 (829)
..++|||+|||.++|+++|.+.|++++. ++++.+ ..+++|||||+|++.++|.+|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3578999999999999999999999863 444332 235689999999999999999998864
Q ss_pred CeeCCcEEEEEecCCCcc---------cchhccccchhhcHHHHHHHHhhc
Q 003329 308 SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQV 349 (829)
Q Consensus 308 ~~i~Gr~I~V~~a~~~~~---------rr~~~~ql~~~~~~~~l~~~f~~~ 349 (829)
..+.|+.|.|+|+.+... +..++.++...+++++++..|.+|
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 367899999999987542 345789999999999999999998
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.8e-23 Score=222.27 Aligned_cols=164 Identities=23% Similarity=0.433 Sum_probs=143.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCc-ccc--ccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDI 232 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~-l~g--r~L~V 232 (829)
...-+|||+-||..++|.|||++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.+ |.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456899999999999999999999999999987 377899999999999999999999999865 444 57888
Q ss_pred cccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003329 233 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 308 (829)
Q Consensus 233 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~ 308 (829)
+|+....+. -..+.+|||+-|+..+||.|++++|++||.|++|++ .+.+||||||.|.+++.|..||++|||.
T Consensus 112 k~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 888654322 234678999999999999999999999999999976 4568999999999999999999999997
Q ss_pred -eeCC--cEEEEEecCCCcccc
Q 003329 309 -DIAG--KRIKLEPSRPGGARR 327 (829)
Q Consensus 309 -~i~G--r~I~V~~a~~~~~rr 327 (829)
++.| .+|.|+|++++..|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 6777 689999999887653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=5.7e-22 Score=230.05 Aligned_cols=164 Identities=16% Similarity=0.281 Sum_probs=137.0
Q ss_pred CCCCCCcEEEEeCCCCCCcHHHHHHHhhcc------------CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcc
Q 003329 158 YGEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 225 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~vTeeeLr~lFs~f------------G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l 225 (829)
......++|||+|||+++|+++|+++|.+| +.|..+. ..+.+|||||+|.+.++|.+||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345667999999999999999999999975 3455554 46789999999999999999995 999999
Q ss_pred ccccccccccCCCCCC-------C------------------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe
Q 003329 226 RRRKLDIHFSIPKDNP-------S------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 280 (829)
Q Consensus 226 ~gr~L~V~~a~pk~~~-------~------------------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri 280 (829)
.|+.|+|......... . .......+|||+|||..+|+++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999998753221100 0 00112368999999999999999999999999999865
Q ss_pred -----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 281 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 281 -----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
++.++|||||+|.+.++|.+||..|+|..|.|++|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4668999999999999999999999999999999999998654
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=1.3e-21 Score=224.27 Aligned_cols=221 Identities=21% Similarity=0.295 Sum_probs=167.8
Q ss_pred cccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-Ccccc-----------------------------
Q 003329 95 NPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-GMELE----------------------------- 144 (829)
Q Consensus 95 ~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-G~~l~----------------------------- 144 (829)
..+++..||.+ +++.+|..+|..+|.|.+++++.+.. |....
T Consensus 90 ~~l~V~nlp~~--------~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~ 161 (457)
T TIGR01622 90 RTVFVLQLALK--------ARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPII 161 (457)
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeE
Confidence 34556667777 78999999999999999999987532 11100
Q ss_pred CCccc---ccc---cCCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHH
Q 003329 145 GEPQE---SLS---MREHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAA 213 (829)
Q Consensus 145 ~~~~~---~~~---~ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A 213 (829)
+.... ... ...........++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 00000 000 0001111223689999999999999999999999999999884 357899999999999999
Q ss_pred HHHHHHhcCCccccccccccccCCCCCCC----------------------------------C----------------
Q 003329 214 RTAMRALQNKPLRRRKLDIHFSIPKDNPS----------------------------------D---------------- 243 (829)
Q Consensus 214 ~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~----------------------------------~---------------- 243 (829)
.+|++.|+|..|.|++|.|.|+....... .
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 99999999999999999999953210000 0
Q ss_pred ------------------------------------CCCCcccceecccCCCCC----------HHHHHHHhcccCCeEE
Q 003329 244 ------------------------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKE 277 (829)
Q Consensus 244 ------------------------------------~~~~~~tLfV~NLp~~vT----------eedL~~iFs~fG~I~~ 277 (829)
......+|+|.||-...+ .+||++.|++||.|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 001235678888854443 3689999999999999
Q ss_pred EEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 278 IRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 278 vrit-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
|.+. +...|++||+|.+.++|.+|++.|||..++|+.|.|.|....
T Consensus 402 v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9875 677899999999999999999999999999999999987543
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.5e-21 Score=210.65 Aligned_cols=181 Identities=22% Similarity=0.350 Sum_probs=159.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc-cccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 234 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~V~~ 234 (829)
...+.|||+.||.++.|+||.-+|++.|+|-++++ ++.+||||||.|.+.++|++|++.||+..|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 44789999999999999999999999999999983 6889999999999999999999999999997 89999987
Q ss_pred cCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCC-eEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhC-
Q 003329 235 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLN- 306 (829)
Q Consensus 235 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~-I~~vri------t~~srG~aFVeF~~~e~A~kAl~~Ln- 306 (829)
+. .+++|||+|||.+.++++|.+.|++.++ |.+|.+ ..++||||||+|++...|.-|-+.|-
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 64 4678999999999999999999999874 555543 34679999999999999999998774
Q ss_pred CC-eeCCcEEEEEecCCCcc---------cchhccccchhhcHHHHHHHHhhcCC
Q 003329 307 RS-DIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQVGS 351 (829)
Q Consensus 307 G~-~i~Gr~I~V~~a~~~~~---------rr~~~~ql~~~~~~~~l~~~f~~~Gs 351 (829)
|+ ++.|..+.|.||.+... +..+++++...++++.+...|.++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 43 67899999999998654 34588999999999999999999973
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.4e-20 Score=218.48 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=135.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...++|||+|||..+|+++|+++|+.||.|..+.+ +++++|||||+|.+.++|..|+..|+|..|.|++|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999998874 5678999999999999999999999999999999999997
Q ss_pred CCCCCCCC------------------------CCCCcccceecccCCC--C--------CHHHHHHHhcccCCeEEEEeC
Q 003329 236 IPKDNPSD------------------------KDLNQGTLVVFNLDPS--V--------SNEDLRQIFGAYGEVKEIRET 281 (829)
Q Consensus 236 ~pk~~~~~------------------------~~~~~~tLfV~NLp~~--v--------TeedL~~iFs~fG~I~~vrit 281 (829)
........ ......+|+|.|+... + ..++|+++|++||.|+.|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54321110 0113457889998532 1 236799999999999999873
Q ss_pred C--------CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 282 P--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 282 ~--------~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
. ..+|++||+|.+.++|++|+..|||..|.|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 2 2368999999999999999999999999999999999754
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=6.4e-21 Score=187.08 Aligned_cols=163 Identities=24% Similarity=0.338 Sum_probs=144.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
....||||+||+..++++-|.++|-+.|+|..++ ++..++|||||+|.+.++|+-|++-|+..+|.|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999998 46789999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEE------EeCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 236 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 236 ~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v------rit~~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
... ........+|||+||.+.+++..|.++|+.||.+... ..++.+++||||.|.+.+.+.+|+..|||+.
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 511 1122234799999999999999999999999988763 2467889999999999999999999999999
Q ss_pred eCCcEEEEEecCCCccc
Q 003329 310 IAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 310 i~Gr~I~V~~a~~~~~r 326 (829)
+..++|+|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999776644
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=5e-21 Score=198.94 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=137.6
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 243 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 243 (829)
-+|||+|||..+++.+|+.||++||+|.+|.+ -|.||||..++...|+.|++.|++.+|.|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999986 47899999999999999999999999999999999876542
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
....+|+|+||.+.++.+||+..|++||.|.+|+|. ++|+||.|+-.++|..|++.|++.++.|++++|..+...
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 345789999999999999999999999999999985 689999999999999999999999999999999988654
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=6e-20 Score=203.52 Aligned_cols=162 Identities=22% Similarity=0.367 Sum_probs=144.3
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.||||++||++++.++|.++|+.+|+|..+.+ +..++||+||.|.-.+++++|++.+.+..|.|+.|.|.++.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999884 4568999999999999999999999999999999999998765
Q ss_pred CCCCC--------------------C--CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEE
Q 003329 239 DNPSD--------------------K--DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 292 (829)
Q Consensus 239 ~~~~~--------------------~--~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF 292 (829)
..... . +.....|.|+|||+.+.+.+|+.+|+.||.|.+|.|. ++-+|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43321 0 1124589999999999999999999999999999874 33479999999
Q ss_pred cCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcc
Q 003329 293 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 293 ~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
.+..+|.+||+.+||.+|+||+|-|.||.++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988763
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=5.9e-20 Score=203.54 Aligned_cols=163 Identities=21% Similarity=0.393 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.-.|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||.|.+..+|.+|++.+|+..|.||+|-|.||.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 468999999999999999999999999999985 3445599999999999999999999999999999999998654
Q ss_pred CCCCC-----------------------------------------C--CC-----------------------------
Q 003329 239 DNPSD-----------------------------------------K--DL----------------------------- 246 (829)
Q Consensus 239 ~~~~~-----------------------------------------~--~~----------------------------- 246 (829)
..-.. + +.
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 22100 0 00
Q ss_pred --------------CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh--
Q 003329 247 --------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL-- 305 (829)
Q Consensus 247 --------------~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~L-- 305 (829)
...+|||+|||+++|+++|.++|++||.|.++.+ +++++|.|||.|.+..+|.+||..-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0048999999999999999999999999999864 7889999999999999999999876
Q ss_pred ---CC-CeeCCcEEEEEecCCCcc
Q 003329 306 ---NR-SDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 306 ---nG-~~i~Gr~I~V~~a~~~~~ 325 (829)
.| ..+.||.|.|..+-....
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHH
Confidence 24 578999999999876553
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.3e-19 Score=195.94 Aligned_cols=173 Identities=20% Similarity=0.343 Sum_probs=146.0
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
..|||+ ++|||..|.++|+++|+|.++++ .. +.|||||.|.++.+|++||+++|...+.|++++|-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468999 89999999999999999998873 43 999999999999999999999999999999999999864321
Q ss_pred CCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEE
Q 003329 241 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 241 ~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit---~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
.|||.||+++++..+|.++|+.||+|.+|++. ..++|| ||+|++.++|.+|+..|||..+.|++|.|
T Consensus 78 ---------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 ---------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred ---------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 29999999999999999999999999999862 237899 99999999999999999999999999999
Q ss_pred EecCCCcccch------------hccccchhhcHHHHHHHHhhcC
Q 003329 318 EPSRPGGARRN------------LMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 318 ~~a~~~~~rr~------------~~~ql~~~~~~~~l~~~f~~~G 350 (829)
....++..|.. ++.......++..+..+|.++|
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g 192 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG 192 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccC
Confidence 88776655432 2333333445566666666665
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.9e-19 Score=193.78 Aligned_cols=224 Identities=20% Similarity=0.354 Sum_probs=175.5
Q ss_pred ccccccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCC-----CccccCCcccc----------------
Q 003329 92 GVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-----GMELEGEPQES---------------- 150 (829)
Q Consensus 92 e~e~~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~g-----G~~l~~~~~~~---------------- 150 (829)
....+.++.-+|.. ++|.+++.+|+..|.|.||.|++++- |-+.......+
T Consensus 32 ~~~vKlfVgqIprt--------~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRT--------ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred chhhhheeccCCcc--------ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 33445677777777 99999999999999999999999842 22211000000
Q ss_pred -----cc--c--CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHH
Q 003329 151 -----LS--M--REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAM 217 (829)
Q Consensus 151 -----~~--~--ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai 217 (829)
+. + +|... -...++|||+-|+..+||.|++++|++||.|++|++ .+.+||||||.|.+.+-|..||
T Consensus 104 G~~~pvqvk~Ad~E~er-~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERER-IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred CCCcceeecccchhhhc-cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHH
Confidence 00 0 11111 123689999999999999999999999999999985 4679999999999999999999
Q ss_pred HHhcCCc-ccc--ccccccccCCCCCCCCCC-------------------------------------------------
Q 003329 218 RALQNKP-LRR--RKLDIHFSIPKDNPSDKD------------------------------------------------- 245 (829)
Q Consensus 218 ~~Lng~~-l~g--r~L~V~~a~pk~~~~~~~------------------------------------------------- 245 (829)
+.||+.. ++| .+|.|+|+.++++...+.
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g 262 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGG 262 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccc
Confidence 9999954 554 588888876654320000
Q ss_pred --------------------------------------------------------------------------------
Q 003329 246 -------------------------------------------------------------------------------- 245 (829)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (829)
T Consensus 263 ~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~ 342 (510)
T KOG0144|consen 263 LPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTP 342 (510)
T ss_pred ccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCc
Confidence
Q ss_pred -------------------------------------------------------------------------------C
Q 003329 246 -------------------------------------------------------------------------------L 246 (829)
Q Consensus 246 -------------------------------------------------------------------------------~ 246 (829)
.
T Consensus 343 ~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGp 422 (510)
T KOG0144|consen 343 ANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGP 422 (510)
T ss_pred hhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCC
Confidence 0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
...+|||.+||.+.-+.+|-..|..||.|++.++ ++-++.|+||.|++..+|.+||..|||..|++++++|...+
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 0037999999999999999999999999998753 66789999999999999999999999999999999999887
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
.+.
T Consensus 503 ~~~ 505 (510)
T KOG0144|consen 503 DRN 505 (510)
T ss_pred ccC
Confidence 665
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=199.40 Aligned_cols=162 Identities=25% Similarity=0.452 Sum_probs=140.2
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecC--------CcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~--------kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
++|||+||++++|.++|..+|.+.|.|.++.+.. .+.|||||+|.++++|+.|++.|+|+.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999997421 25599999999999999999999999999999999998
Q ss_pred CCCC--CC---CCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCC-----cccEEEEEEcCHHHHHHHHHHh
Q 003329 236 IPKD--NP---SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 236 ~pk~--~~---~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~-----srG~aFVeF~~~e~A~kAl~~L 305 (829)
..+. .. ........+|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-+.++|.+|+++|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 7111 10 011112358999999999999999999999999999998543 4899999999999999999999
Q ss_pred CCCeeCCcEEEEEecCCCcc
Q 003329 306 NRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 306 nG~~i~Gr~I~V~~a~~~~~ 325 (829)
..+-+.||+|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987763
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.6e-18 Score=184.20 Aligned_cols=157 Identities=22% Similarity=0.466 Sum_probs=138.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
-++|||+.|.+...|+.||..|..||+|++|. ++++++|||||+|+-++.|+.|++.+||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47899999999999999999999999999998 5899999999999999999999999999999999999984 3
Q ss_pred CCCCCCC---------CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003329 238 KDNPSDK---------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 303 (829)
Q Consensus 238 k~~~~~~---------~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~ 303 (829)
...+... ...-.+|||..+.++++++||+.+|+.||+|++|.+ ....||||||+|.+...-.+||.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 3222211 122368999999999999999999999999999976 34569999999999999999999
Q ss_pred HhCCCeeCCcEEEEEecC
Q 003329 304 SLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 304 ~LnG~~i~Gr~I~V~~a~ 321 (829)
.||-..++|.-|+|-.+.
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999986553
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.2e-18 Score=174.18 Aligned_cols=135 Identities=25% Similarity=0.420 Sum_probs=114.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 240 (829)
...|||||+||..+|||+-|..||.+.|.|.++++.-. .|+|.|+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------hhccccccCccc
Confidence 34589999999999999999999999999999875221 456777654433
Q ss_pred CCCCCCC-cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE
Q 003329 241 PSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 314 (829)
Q Consensus 241 ~~~~~~~-~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~ 314 (829)
.+..... .-.+||+.|...++.++|++.|.+||+|.++++ +.++||||||.|.+.++|++||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3332222 346899999999999999999999999999876 6789999999999999999999999999999999
Q ss_pred EEEEecCCCcc
Q 003329 315 IKLEPSRPGGA 325 (829)
Q Consensus 315 I~V~~a~~~~~ 325 (829)
|+..||.++..
T Consensus 134 IRTNWATRKp~ 144 (321)
T KOG0148|consen 134 IRTNWATRKPS 144 (321)
T ss_pred eeccccccCcc
Confidence 99999987653
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2e-17 Score=184.55 Aligned_cols=210 Identities=17% Similarity=0.310 Sum_probs=168.8
Q ss_pred CCchhhccCCCCCCCcccceeecCCCCccccCCc---cc---------cccc----C---CCCCCCCCCcEEEEeCCCCC
Q 003329 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP---QE---------SLSM----R---EHPYGEHPSRTLFVRNINSN 174 (829)
Q Consensus 114 ~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~---~~---------~~~~----g---e~~~~e~~srtLfV~NLP~~ 174 (829)
+++..|...|+..|.+.+++|-++. + .+.-.. +. .+++ + ..-...+..+.|||+||+++
T Consensus 10 v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~ 87 (369)
T KOG0123|consen 10 VTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDES 87 (369)
T ss_pred CChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcc
Confidence 5788889999999999999998887 5 544211 10 0010 0 01112223334999999999
Q ss_pred CcHHHHHHHhhccCCEEEEEec---CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCC----CCC
Q 003329 175 VEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDK----DLN 247 (829)
Q Consensus 175 vTeeeLr~lFs~fG~I~sv~~t---~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~----~~~ 247 (829)
+|..+|.++|+.||+|.+|++. .-++|| ||+|.+.++|++|++.+||..+.+++|.|.....+...... ...
T Consensus 88 ~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~ 166 (369)
T KOG0123|consen 88 IDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKR 166 (369)
T ss_pred cCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhh
Confidence 9999999999999999999952 238999 99999999999999999999999999999887665443221 122
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
-..++|.|++.+++++.|..+|..||.|..+.+ .+++++|+||+|++.++|..|++.|++..+.++.+.|..+..+
T Consensus 167 ~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 167 FTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 468999999999999999999999999999965 4557999999999999999999999999999999999988775
Q ss_pred ccc
Q 003329 324 GAR 326 (829)
Q Consensus 324 ~~r 326 (829)
..+
T Consensus 247 ~e~ 249 (369)
T KOG0123|consen 247 SER 249 (369)
T ss_pred hhh
Confidence 544
No 34
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=4.3e-17 Score=165.88 Aligned_cols=163 Identities=26% Similarity=0.456 Sum_probs=143.3
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHH----HhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~----lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
+..++.||||+||+..+..++|+. ||++||.|..|.. +.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345567999999999999999998 9999999999873 7889999999999999999999999999999999999
Q ss_pred cccCCCCCCCCC----------------------------------------------CCCcccceecccCCCCCHHHHH
Q 003329 233 HFSIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLR 266 (829)
Q Consensus 233 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vTeedL~ 266 (829)
+||..+.+...+ ...+..|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 998654322111 1223579999999999999999
Q ss_pred HHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CcEEEEEecC
Q 003329 267 QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 321 (829)
Q Consensus 267 ~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~-Gr~I~V~~a~ 321 (829)
.+|.+|...++|+.....++.|||+|.+...|..|...|+|..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988878899999999999999999999999886 7888888875
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=1.5e-16 Score=185.60 Aligned_cols=133 Identities=12% Similarity=0.252 Sum_probs=99.6
Q ss_pred ccccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCC-----CCcccc-CCc---------------ccc--cc
Q 003329 96 PAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSG-----GGMELE-GEP---------------QES--LS 152 (829)
Q Consensus 96 ~~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~-----gG~~l~-~~~---------------~~~--~~ 152 (829)
..++..|+.+ +++.+|+.+|..+|+|.+++++.+. .|.... ... ..+ +.
T Consensus 109 rLfVGnLp~~--------~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 109 RVYVGSISFE--------LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred EEEEcCCCCC--------CCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 3445556767 7999999999999999999987652 111100 000 000 00
Q ss_pred cC-------------CCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHH
Q 003329 153 MR-------------EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAAR 214 (829)
Q Consensus 153 ~g-------------e~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~ 214 (829)
++ .........++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 10 00011224579999999999999999999999999999984 4678999999999999999
Q ss_pred HHHHHhcCCccccccccccccC
Q 003329 215 TAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 215 ~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
+|++.||+..|.|+.|+|.++.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecC
Confidence 9999999999999999987754
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8e-18 Score=173.10 Aligned_cols=166 Identities=23% Similarity=0.430 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcc-cc--ccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL-RR--RKLDIHF 234 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l-~g--r~L~V~~ 234 (829)
..++|||+-|...-.|+|++.+|..||+|.+|.+ .+.+||||||.|.+.-+|+.||..|+|..- -| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4689999999999999999999999999999984 567999999999999999999999999653 22 2334444
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003329 235 SIPKDNPS------------------------------------------------------------------------ 242 (829)
Q Consensus 235 a~pk~~~~------------------------------------------------------------------------ 242 (829)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 22111000
Q ss_pred --------------------------------------------------------------------------------
Q 003329 243 -------------------------------------------------------------------------------- 242 (829)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (829)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCH
Q 003329 243 ----------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 295 (829)
Q Consensus 243 ----------------------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~ 295 (829)
.+....++|||..||.+..+.||.++|-+||.|.+.++ +..+|.||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00012268999999999999999999999999998754 778899999999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEEEecCCCcccc
Q 003329 296 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 327 (829)
Q Consensus 296 e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~rr 327 (829)
..|+.||.+|||..|+-|+|+|...+|+...|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999988655
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=3.2e-14 Score=154.70 Aligned_cols=158 Identities=23% Similarity=0.381 Sum_probs=130.2
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhh-ccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs-~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
.|.+||.|||+++...+|++||. +.|+|..|.+ .+|.+|||.|+|+++|.+++|++.||...+.||+|.|+--..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46699999999999999999997 7899999983 689999999999999999999999999999999998764211
Q ss_pred CCC------------------------------------------CCCCC------------------------------
Q 003329 238 KDN------------------------------------------PSDKD------------------------------ 245 (829)
Q Consensus 238 k~~------------------------------------------~~~~~------------------------------ 245 (829)
... +.+++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00000
Q ss_pred ---------CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 246 ---------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 246 ---------~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
....++||.||.+.+..+.|++.|.-.|.|..|.+ .+.++|++.|+|+.+-+|.+||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01137899999999999999999999999988853 45789999999999999999999999877777
Q ss_pred cEEEEEec
Q 003329 313 KRIKLEPS 320 (829)
Q Consensus 313 r~I~V~~a 320 (829)
++..+..-
T Consensus 284 ~~~~~Rl~ 291 (608)
T KOG4212|consen 284 RRMTVRLD 291 (608)
T ss_pred ccceeecc
Confidence 77776653
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.64 E-value=4.2e-16 Score=168.99 Aligned_cols=162 Identities=18% Similarity=0.392 Sum_probs=141.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..++|||++|+++++++.|++.|++||+|..|.+ +++++||+||+|.+++...+++. .....|.++.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999984 67899999999999999999987 45577899999999988
Q ss_pred CCCCCCCCCC--CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 237 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 237 pk~~~~~~~~--~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
+......... ...++||++||.++++++|++.|.+||.|..+.+ +.+.++|+||.|++.+.+.+++. ..-++
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 7765433222 3568999999999999999999999998887743 45679999999999999999987 57789
Q ss_pred eCCcEEEEEecCCCcc
Q 003329 310 IAGKRIKLEPSRPGGA 325 (829)
Q Consensus 310 i~Gr~I~V~~a~~~~~ 325 (829)
|.|+.++|+.|.|+..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999998763
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.63 E-value=1.7e-16 Score=177.51 Aligned_cols=164 Identities=23% Similarity=0.364 Sum_probs=140.7
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
...++..+|+|+--|...+++.+|.++|+.+|.|+.|++ +.+++|.|||+|.|.+....|+. |.|+.+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 345667889999999999999999999999999999983 67799999999999999999996 999999999999
Q ss_pred ccccCCCCCCCCC----------CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHH
Q 003329 232 IHFSIPKDNPSDK----------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVR 296 (829)
Q Consensus 232 V~~a~pk~~~~~~----------~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e 296 (829)
|+......+.... ..+-..|||+||.+++++++|+.+|++||.|..|.+ ++.++|||||+|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 9875432221100 011123999999999999999999999999999853 6788999999999999
Q ss_pred HHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 297 AAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 297 ~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
+|.+|+..|||.+|.|+.|+|....
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEee
Confidence 9999999999999999999987654
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.8e-15 Score=146.63 Aligned_cols=149 Identities=22% Similarity=0.337 Sum_probs=127.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCC--cceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~k--skG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
+.+++|||+|||.++-+.||.+||-+||.|..|.+..+ .-.||||+|+++.+|+.||..-+|..+.|..|+|+|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999986544 3579999999999999999999999999999999997643
Q ss_pred CCCCC----------------------CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHH
Q 003329 239 DNPSD----------------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 296 (829)
Q Consensus 239 ~~~~~----------------------~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e 296 (829)
..... ....+-.+.|++||++-+.+||+++..+-|+|....+. +.|++.|+|...+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 21110 11123479999999999999999999999999998876 4569999999999
Q ss_pred HHHHHHHHhCCCeeC
Q 003329 297 AAEAALKSLNRSDIA 311 (829)
Q Consensus 297 ~A~kAl~~LnG~~i~ 311 (829)
+-+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877654
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.56 E-value=1.1e-14 Score=163.27 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=156.0
Q ss_pred hhccCCchhhccCCCCCCCcccceeecCCC-----Ccccc-CCc------------cccccc------------------
Q 003329 110 LAGIMDDFDLRGLPSSLEDLEDYDIFGSGG-----GMELE-GEP------------QESLSM------------------ 153 (829)
Q Consensus 110 ~~~i~de~~l~~lf~~lgeveev~vf~~~g-----G~~l~-~~~------------~~~~~~------------------ 153 (829)
++.-+.+-+|.++|+..|.|.+|.++.+.. |+... ... +..+.+
T Consensus 187 la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s 266 (549)
T KOG0147|consen 187 LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANAS 266 (549)
T ss_pred HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhcc
Confidence 334477888999999999999999998732 11110 000 000000
Q ss_pred --CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc
Q 003329 154 --REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 226 (829)
Q Consensus 154 --ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~ 226 (829)
-+...-..|-+.|||+||..++++++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|+..|||..|.
T Consensus 267 ~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 267 PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec
Confidence 010011233344999999999999999999999999999872 7889999999999999999999999999999
Q ss_pred cccccccccCCCCCCCC---------------------------------------------------------------
Q 003329 227 RRKLDIHFSIPKDNPSD--------------------------------------------------------------- 243 (829)
Q Consensus 227 gr~L~V~~a~pk~~~~~--------------------------------------------------------------- 243 (829)
|+.|+|......-....
T Consensus 347 Gr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 426 (549)
T KOG0147|consen 347 GRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVR 426 (549)
T ss_pred CceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcC
Confidence 99998765321110000
Q ss_pred -----CC-------CCcccceeccc--CCCCC--------HHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHH
Q 003329 244 -----KD-------LNQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 301 (829)
Q Consensus 244 -----~~-------~~~~tLfV~NL--p~~vT--------eedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kA 301 (829)
.. +...++.++|+ |.+.| .+|+.+.+++||.|..|.+...+-|+.||.|.+.++|..|
T Consensus 427 ~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a 506 (549)
T KOG0147|consen 427 VRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTA 506 (549)
T ss_pred ccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHH
Confidence 00 11124555555 22222 2678888999999999999888889999999999999999
Q ss_pred HHHhCCCeeCCcEEEEEecC
Q 003329 302 LKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 302 l~~LnG~~i~Gr~I~V~~a~ 321 (829)
+++|||.+|.||-|+..|-.
T Consensus 507 ~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 507 VKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHhhhhhccceeEEEEee
Confidence 99999999999999988753
No 42
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=138.56 Aligned_cols=150 Identities=20% Similarity=0.336 Sum_probs=116.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--cCC----cceEEEEEEcCHHHHHHHHHHhcCCccc---cccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACK----HRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 232 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--t~k----skG~AFV~F~d~e~A~~Ai~~Lng~~l~---gr~L~V 232 (829)
.-|||||.+||.++...||+.||..|--.+.+.+ +.+ .+-+|||.|.+..+|..|+.+|||.+|. +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999865555442 333 3368999999999999999999999986 677888
Q ss_pred cccCCCCCCCCCC------------------------------------------------C------------------
Q 003329 233 HFSIPKDNPSDKD------------------------------------------------L------------------ 246 (829)
Q Consensus 233 ~~a~pk~~~~~~~------------------------------------------------~------------------ 246 (829)
++++......+.. .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 8764321100000 0
Q ss_pred ----------------CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC-CcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 247 ----------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 247 ----------------~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~-~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
.-.||||-||..++||++|+++|+.|-....+++.. .....|||+|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 003899999999999999999999997655555532 235579999999999999999999887
Q ss_pred eC
Q 003329 310 IA 311 (829)
Q Consensus 310 i~ 311 (829)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 63
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=4e-14 Score=145.55 Aligned_cols=150 Identities=26% Similarity=0.431 Sum_probs=129.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC---
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN--- 240 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~--- 240 (829)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.|..+|..|+..|+++.|.+..+.|+|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999865 468999999999999999999999999998899999874211
Q ss_pred ---CC----------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003329 241 ---PS----------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 307 (829)
Q Consensus 241 ---~~----------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG 307 (829)
.. ........|.|.++...+.+.+|.++|.++|.+....+ .++++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 00 01123457889999999999999999999999955554 678999999999999999999999
Q ss_pred CeeCCcEEEEEe
Q 003329 308 SDIAGKRIKLEP 319 (829)
Q Consensus 308 ~~i~Gr~I~V~~ 319 (829)
.++.|+.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=1.9e-13 Score=151.82 Aligned_cols=105 Identities=23% Similarity=0.366 Sum_probs=94.9
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
...++|||+|||.++|+++|+++|+.||.|++|++ +++++|||||+|.+.++|++||+.|++..+.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35679999999999999999999999999999976 4567899999999999999999999999999999999998
Q ss_pred CCCc----ccchhccccchhhcHHHHHHHHhhcC
Q 003329 321 RPGG----ARRNLMLQLNQELEQDESRILQHQVG 350 (829)
Q Consensus 321 ~~~~----~rr~~~~ql~~~~~~~~l~~~f~~~G 350 (829)
++.. ..+.++..+...+++++++.+|.+||
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 7643 23458899999999999999999987
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.46 E-value=4.7e-13 Score=145.20 Aligned_cols=166 Identities=25% Similarity=0.401 Sum_probs=136.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceE-EEEEEcCHHHHHHHHHHhcCCcccc--cccccccc---
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFS--- 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~-AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a--- 235 (829)
+--.++|.|+-+-|+-+-|..+|++||.|..|.+..|..|| |+|+|.|.+.|+.|...|+|+.|.+ ..|+|.|+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 34467889999999999999999999999999888889998 9999999999999999999998763 35555443
Q ss_pred -------CCCCCC-------CC--------------------------------------C--CC--CcccceecccC-C
Q 003329 236 -------IPKDNP-------SD--------------------------------------K--DL--NQGTLVVFNLD-P 258 (829)
Q Consensus 236 -------~pk~~~-------~~--------------------------------------~--~~--~~~tLfV~NLp-~ 258 (829)
..+.+. .. . .. ....|.|.||. .
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 211110 00 0 00 02467888886 4
Q ss_pred CCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCcccc
Q 003329 259 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 327 (829)
Q Consensus 259 ~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~rr 327 (829)
.+|.+.|..+|+.||+|.+|++.-+++..|.|+|.|...|+-|+..|+|..+.||+|+|.+++.....-
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 589999999999999999999977777899999999999999999999999999999999998876443
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=4.2e-13 Score=131.53 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
...+++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999884 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003329 235 SIPKD 239 (829)
Q Consensus 235 a~pk~ 239 (829)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=5.9e-13 Score=130.47 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=72.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||+|||.++|+++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++.+|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999976 45679999999999999999999999999999999999987
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.39 E-value=3.3e-12 Score=138.71 Aligned_cols=160 Identities=28% Similarity=0.381 Sum_probs=136.3
Q ss_pred CcEEEEeCCC-CCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCC
Q 003329 163 SRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 241 (829)
Q Consensus 163 srtLfV~NLP-~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~ 241 (829)
+..|.|.||. ..||.+-|..+|+-||+|.+|++....+--|+|+|.|...|+.|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5789999996 459999999999999999999987777788999999999999999999999999999999987532111
Q ss_pred ------CCC----C---------------------CCcccceecccCCCCCHHHHHHHhcccCC-eEEEEeCCCcccEEE
Q 003329 242 ------SDK----D---------------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKF 289 (829)
Q Consensus 242 ------~~~----~---------------------~~~~tLfV~NLp~~vTeedL~~iFs~fG~-I~~vrit~~srG~aF 289 (829)
.+. + ....+|.+.|+|.+++||+|+..|..-|. |+-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 000 0 12258999999999999999999998875 466677777888999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCC-cEEEEEecCC
Q 003329 290 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 322 (829)
Q Consensus 290 VeF~~~e~A~kAl~~LnG~~i~G-r~I~V~~a~~ 322 (829)
+.+.++|+|..|+..++.+.+++ ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999998876 5999999875
No 49
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=1.2e-11 Score=132.44 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=133.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEE--------E----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL--------Y----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 227 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv--------~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g 227 (829)
..-++.|||.|||.++|.+++.++|++||-|.+- + -.++-+|-|.+.|...+++..|++.|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4456789999999999999999999999987642 2 257889999999999999999999999999999
Q ss_pred ccccccccCCCCC--------C--------------------------CCCCCCcccceecccC----CCCC-------H
Q 003329 228 RKLDIHFSIPKDN--------P--------------------------SDKDLNQGTLVVFNLD----PSVS-------N 262 (829)
Q Consensus 228 r~L~V~~a~pk~~--------~--------------------------~~~~~~~~tLfV~NLp----~~vT-------e 262 (829)
++|+|+.|.-... . ..+....++|.++|+= ...+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999987631100 0 0011223688888873 1223 3
Q ss_pred HHHHHHhcccCCeEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 263 EDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 263 edL~~iFs~fG~I~~vrit-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
++|++-+++||.|.+|.+. .+..|.+-|.|.+.++|..||+.|+|..++||+|..+...-+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 6777889999999999874 5678999999999999999999999999999999988766544
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=5.6e-12 Score=106.11 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=61.5
Q ss_pred ceecccCCCCCHHHHHHHhcccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 251 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 251 LfV~NLp~~vTeedL~~iFs~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
|||+|||.++|+++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998653 45789999999999999999999999999999985
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=8.1e-12 Score=105.14 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=61.6
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 166 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 166 LfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
|||+|||.++|+++|+++|++||.|..+.+ .++.+|+|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998884 356899999999999999999999999999998874
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=7.1e-12 Score=123.21 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=73.2
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
-.++|||+||+..+++.||..+|..||+|.+|.+.....|||||+|+++.+|+.|+..|+|+.|+|..|.|+++.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999998543
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=3.9e-11 Score=124.14 Aligned_cols=119 Identities=27% Similarity=0.444 Sum_probs=101.8
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
.++|||+|||.++|+++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999988773 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC
Q 003329 238 ----KDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 281 (829)
Q Consensus 238 ----k~~~~----------------~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit 281 (829)
..... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 22111 011233689999999999999999999999999777653
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1e-11 Score=122.15 Aligned_cols=78 Identities=29% Similarity=0.471 Sum_probs=73.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
-.++|||+||+..+++.||+.+|..||.|..|-+.....|||||||+++.+|+.|+..|+|+.|.|.+|+|+++.-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 357899999999999999999999999999998877889999999999999999999999999999999999986543
No 55
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=6.9e-11 Score=131.62 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=122.6
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE---ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~---~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
.-.|-+++||+++|++||+++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..|-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45688899999999999999999986 56555 468899999999999999999999 67777777777776553332
Q ss_pred CC-------CCCCCCcccceecccCCCCCHHHHHHHhcccCCeEE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003329 240 NP-------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 307 (829)
Q Consensus 240 ~~-------~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~-vri----t~~srG~aFVeF~~~e~A~kAl~~LnG 307 (829)
.. .........|.+++||+.+|++||.++|+..-.|.. |.+ .+++.|-|||+|.+.+.|++||.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 11 111235678999999999999999999987644433 211 245678899999999999999985 67
Q ss_pred CeeCCcEEEEEecCC
Q 003329 308 SDIAGKRIKLEPSRP 322 (829)
Q Consensus 308 ~~i~Gr~I~V~~a~~ 322 (829)
..|.-+-|+|-.+..
T Consensus 167 e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSR 181 (510)
T ss_pred HhhccceEEeehhHH
Confidence 788888898876643
No 56
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=2.2e-11 Score=137.30 Aligned_cols=164 Identities=27% Similarity=0.412 Sum_probs=134.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|+........
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 56789999999999999999999999999999999889999999999999999999999999999999988732211100
Q ss_pred ------------------CCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHH
Q 003329 240 ------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 301 (829)
Q Consensus 240 ------------------~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kA 301 (829)
......-....+++- |++..+..-++.+|+.+|.++. +.++..+..-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 000011123455544 9999999889999999999988 88887777889999999999888
Q ss_pred HHHhCCCeeCCcEEEEEecCCCccc
Q 003329 302 LKSLNRSDIAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 302 l~~LnG~~i~Gr~I~V~~a~~~~~r 326 (829)
+..+ |..+.+....+.++.+.+..
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g~~ 253 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGGVW 253 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCccc
Confidence 7755 78888888888999886644
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=5.3e-11 Score=107.90 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.+.-++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4455789999999999999999999999999999996 56689999999999999999999999999999999999876
Q ss_pred CC
Q 003329 237 PK 238 (829)
Q Consensus 237 pk 238 (829)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 53
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=1.4e-11 Score=129.17 Aligned_cols=132 Identities=21% Similarity=0.353 Sum_probs=109.9
Q ss_pred cccCCCCCChHHHhhccCCchhhccCCCCCCCcccceeecCCCCccccCCcccccc-------------c--CCCCCCCC
Q 003329 97 AIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLS-------------M--REHPYGEH 161 (829)
Q Consensus 97 ~i~N~LP~d~del~~~i~de~~l~~lf~~lgeveev~vf~~~gG~~l~~~~~~~~~-------------~--ge~~~~e~ 161 (829)
+++..||+. +++.+++.+|+++|.|-||||+.+-|=+.++.+.+.... + ........
T Consensus 5 LFIGNLp~~--------~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 5 LFIGNLPRE--------ATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred hhccCCCcc--------cchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 455567766 789999999999999999999999877777755432211 1 12222345
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
.+++|+|+||.+.++.+||+..|++||.|.+|++ -++|+||.|.-.++|..|++.|++..|.|+++.|+.+...-
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 7899999999999999999999999999999976 57999999999999999999999999999999999986543
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2.2e-10 Score=122.89 Aligned_cols=159 Identities=16% Similarity=0.367 Sum_probs=124.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.-.+|||..+.++.+|+||+..|+.||+|..|.+ ...++||+||+|.+..+-..|+..+|-..+.|+-|+|..+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3568999999999999999999999999999983 56799999999999999999999999999988877764421
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 003329 237 PKDNP--------------------------------------------------------------------------- 241 (829)
Q Consensus 237 pk~~~--------------------------------------------------------------------------- 241 (829)
...+.
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 10000
Q ss_pred --C-------------------------------CC--------------------------------------CCCccc
Q 003329 242 --S-------------------------------DK--------------------------------------DLNQGT 250 (829)
Q Consensus 242 --~-------------------------------~~--------------------------------------~~~~~t 250 (829)
. ++ ....+.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 0 00 000134
Q ss_pred ceeccc--CCCCC---HHHHHHHhcccCCeEEEEeCCCccc---------EEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 251 LVVFNL--DPSVS---NEDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 251 LfV~NL--p~~vT---eedL~~iFs~fG~I~~vrit~~srG---------~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
+.++|. |.+++ +.++.+.+++||.|.+|.|...+.+ .-||+|....++.+|+.+|+|..++|+++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 666776 45554 4689999999999999976543322 369999999999999999999999999998
Q ss_pred EEec
Q 003329 317 LEPS 320 (829)
Q Consensus 317 V~~a 320 (829)
.+..
T Consensus 529 AE~Y 532 (544)
T KOG0124|consen 529 AEVY 532 (544)
T ss_pred hhhh
Confidence 6654
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.3e-10 Score=132.20 Aligned_cols=165 Identities=17% Similarity=0.341 Sum_probs=128.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.......+||++||...++.+++++.+.||+++... .++-++||||.+|.++.-...|+..|||+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 344567899999999999999999999999988766 256899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC--------------------CCCcccceecccC--CCC-CH-------HHHHHHhcccCCeEEEEeCCC
Q 003329 234 FSIPKDNPSDK--------------------DLNQGTLVVFNLD--PSV-SN-------EDLRQIFGAYGEVKEIRETPH 283 (829)
Q Consensus 234 ~a~pk~~~~~~--------------------~~~~~tLfV~NLp--~~v-Te-------edL~~iFs~fG~I~~vrit~~ 283 (829)
.+.+....... ......|.+.|+= .++ .+ |+++.-+++||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 87654321111 1111233333331 111 11 456777789999999976322
Q ss_pred --------cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 284 --------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 284 --------srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..|..||+|.+.+++++|+.+|+|.++.|+.|...|....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3667999999999999999999999999999999987643
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.6e-11 Score=125.93 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=70.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri---t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..++|+|+|||+..-+-||+.+|++||.|.+|.| ...+||||||+|++.++|++|-.+|||..|.||+|+|..+...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 4578999999999999999999999999999976 2457999999999999999999999999999999999988654
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4.7e-11 Score=111.97 Aligned_cols=76 Identities=26% Similarity=0.475 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.+.++||||+||...++|++|.+||+++|+|+.|.+ +...-|||||+|...++|..|++-+++..+..++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 356899999999999999999999999999999973 566889999999999999999999999999999999988
Q ss_pred c
Q 003329 235 S 235 (829)
Q Consensus 235 a 235 (829)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-10 Score=120.23 Aligned_cols=79 Identities=22% Similarity=0.425 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
.....+|-|.||+.+++|++|++||.+||.|.+|++ ++.++|||||.|.+.++|.+||+.|+|.-+..--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346789999999999999999999999999999983 889999999999999999999999999999999999999
Q ss_pred cCCC
Q 003329 235 SIPK 238 (829)
Q Consensus 235 a~pk 238 (829)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2e-10 Score=121.25 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec--CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t--~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
.++|||+|||+.+|+++|+++|+.||+|.+|++. ...+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5899999999999999999999999999999852 3368999999999999999996 99999999999999986443
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=1.8e-10 Score=121.60 Aligned_cols=75 Identities=20% Similarity=0.390 Sum_probs=68.3
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeCC--CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~--~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.++|||+||++.+|+++|+++|+.||+|.+|++.. ..+|||||+|.+.++|+.||. |+|..|.|+.|+|.+++.-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 46899999999999999999999999999998743 357999999999999999996 9999999999999997643
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=3.8e-10 Score=93.61 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=63.1
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCC---cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~---srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999976533 47999999999999999999999999999999874
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3e-10 Score=96.60 Aligned_cols=66 Identities=35% Similarity=0.644 Sum_probs=58.8
Q ss_pred ceecccCCCCCHHHHHHHhcccCCeEEEEeCCC----cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 251 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 251 LfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~----srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
|||+|||+++++++|+++|+.||.|..+++... .+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999976433 479999999999999999999999999999985
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.5e-10 Score=117.55 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.5
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-----it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|.|.||+.++++++|+++|.+||.|..|. .++.+||||||.|.++++|++||..|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 457899999999999999999999999999984 478899999999999999999999999999999999999999
Q ss_pred CC
Q 003329 322 PG 323 (829)
Q Consensus 322 ~~ 323 (829)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=5.5e-10 Score=101.37 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=73.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
-...|||+|||+++|.++..++|++||.|..||+ +...+|-|||.|++..+|.+|++.|+|..+.++.+.|-+-.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3568999999999999999999999999999998 45669999999999999999999999999999999999988766
Q ss_pred ccc
Q 003329 325 ARR 327 (829)
Q Consensus 325 ~rr 327 (829)
..+
T Consensus 97 ~~~ 99 (124)
T KOG0114|consen 97 AFK 99 (124)
T ss_pred HHH
Confidence 443
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=2.7e-10 Score=96.81 Aligned_cols=66 Identities=23% Similarity=0.545 Sum_probs=58.3
Q ss_pred EEEeCCCCCCcHHHHHHHhhccCCEEEEEec----CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 166 LFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 166 LfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t----~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
|||+|||+++++++|+++|+.||.|..+++. +..+|+|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998842 34689999999999999999999998999998864
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=121.22 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
...++|+|.|||...-|-||+.+|++||.|.+|.| ..-+|||+||.|+++++|++|.++|||..+.||+|.|..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 33578999999999999999999999999999984 345999999999999999999999999999999999999876
Q ss_pred C
Q 003329 238 K 238 (829)
Q Consensus 238 k 238 (829)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 72
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.5e-10 Score=114.84 Aligned_cols=77 Identities=27% Similarity=0.509 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
....++|.|-||-+-++.++|+.+|++||.|.+|+| +..++|||||.|.+..+|+.|+++|+|..|.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 344689999999999999999999999999999994 788999999999999999999999999999999999998
Q ss_pred cC
Q 003329 235 SI 236 (829)
Q Consensus 235 a~ 236 (829)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 85
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.4e-10 Score=107.28 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=68.7
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..+||||+||.+.++|++|.++|+++|+|+.|.+ +....|||||+|...++|+.|++-++|..++.+.|+|.|--
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999843 45568999999999999999999999999999999998753
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=7.9e-10 Score=90.47 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.6
Q ss_pred HHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 265 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 265 L~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
|+++|++||+|.++.+..+++++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987666799999999999999999999999999999999986
No 75
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.03 E-value=7.8e-10 Score=109.61 Aligned_cols=105 Identities=26% Similarity=0.283 Sum_probs=92.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
.+.||||+||+..++++.|.++|-+.|.|..+++ +...+|||||+|.++++|+-|++.||...+.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4679999999999999999999999999999965 55679999999999999999999999999999999999887
Q ss_pred CCcc-----cchhccccchhhcHHHHHHHHhhcCC
Q 003329 322 PGGA-----RRNLMLQLNQELEQDESRILQHQVGS 351 (829)
Q Consensus 322 ~~~~-----rr~~~~ql~~~~~~~~l~~~f~~~Gs 351 (829)
.... .+.+++++..++++..+...|++||.
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc
Confidence 3222 13468899999999999999999983
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.03 E-value=8.1e-10 Score=91.58 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCEEEEEec---CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 165 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 165 tLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t---~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
+|||+|||..+++++|+++|++||+|..+.+. +.++|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998753 3357999999999999999999999999999888763
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=4.6e-10 Score=115.30 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=66.1
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.+..-++|||++|++.+..++|+++|++||+|.+..+ ++++|||+||.|.|.++|.+|++. -+-.|.||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 3445689999999999999999999999999988763 789999999999999999999984 3456788887777
Q ss_pred ccC
Q 003329 234 FSI 236 (829)
Q Consensus 234 ~a~ 236 (829)
++.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 764
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=5.1e-10 Score=123.82 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=69.7
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC-CcccEEEEEEcCH--HHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~-~srG~aFVeF~~~--e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
....+|||+||++++|+++|+.+|+.||.|.+|.+.. ..||||||+|... .++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3456899999999999999999999999999997631 2289999999987 789999999999999999999999977
Q ss_pred C
Q 003329 323 G 323 (829)
Q Consensus 323 ~ 323 (829)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 5
No 79
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=7.1e-10 Score=116.99 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
.+...|-+||||.-|+++++|.+|+..|++||+|+.|. ++++++|||||+|.+..+...|.+..+|..|.|+.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 34557889999999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred ccccC
Q 003329 232 IHFSI 236 (829)
Q Consensus 232 V~~a~ 236 (829)
|.+-.
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 88753
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.00 E-value=3.7e-09 Score=114.11 Aligned_cols=171 Identities=21% Similarity=0.333 Sum_probs=134.0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHh--cCCcccccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLD 231 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~L--ng~~l~gr~L~ 231 (829)
+..+....++-.|.|++|-..++|.+|.+..+.||.|..+.. ...+.-|.|+|+|++.|+.|+.-- +...+.|+..-
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 445566777889999999999999999999999999998854 456778999999999999998732 33446677777
Q ss_pred ccccCCCCC--CCCCC-CCcccce--ecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 232 IHFSIPKDN--PSDKD-LNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 232 V~~a~pk~~--~~~~~-~~~~tLf--V~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
+.|+..+.- +..+. ..+..|. |-|--+.+|.+-|.+++...|.|..|.|..+..-.|.|||++.+.|++|..+||
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 777643321 11111 1223343 345457789999999999999999999876655569999999999999999999
Q ss_pred CCeeC-C-cEEEEEecCCCcc
Q 003329 307 RSDIA-G-KRIKLEPSRPGGA 325 (829)
Q Consensus 307 G~~i~-G-r~I~V~~a~~~~~ 325 (829)
|..|. | ++|+|+||+|...
T Consensus 181 GADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccccceeEEEEecCccee
Confidence 99885 4 7999999999764
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=3.8e-10 Score=113.52 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.2
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
-.+|.|.||-+-+|.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..++|+.|.|++|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 357999999999999999999999999999965 677899999999999999999999999999999999988764
Q ss_pred C
Q 003329 323 G 323 (829)
Q Consensus 323 ~ 323 (829)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=114.72 Aligned_cols=93 Identities=30% Similarity=0.421 Sum_probs=80.8
Q ss_pred ccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 232 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 232 V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-----it~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
+....|..++......-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|++..+...|.+..+
T Consensus 85 l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 85 LKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred HHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 334456555555555678999999999999999999999999999996 488999999999999999999999999
Q ss_pred CCeeCCcEEEEEecCCCc
Q 003329 307 RSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 307 G~~i~Gr~I~V~~a~~~~ 324 (829)
|..|+|+.|.|.+-+-..
T Consensus 165 G~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 165 GIKIDGRRILVDVERGRT 182 (335)
T ss_pred CceecCcEEEEEeccccc
Confidence 999999999999876543
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=98.98 E-value=1.1e-09 Score=121.17 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=86.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-cCCcceEEEEEEcCH--HHHHHHHHHhcCCccccccccccccC
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-t~kskG~AFV~F~d~--e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.....+|||+||++++++++|+.+|..||.|.+|.+ ..+.||||||+|... .++.+||..|+|..+.|+.|+|.-|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 344689999999999999999999999999999984 233499999999987 78999999999999999999999887
Q ss_pred CCCCC------C-CCCCCcccceecccCCC-CCHHHHHHHhcccCCeEEEEe
Q 003329 237 PKDNP------S-DKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRE 280 (829)
Q Consensus 237 pk~~~------~-~~~~~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vri 280 (829)
|.-.. . .......++- |+.. .....|+-+|-+.++|+.+-+
T Consensus 87 P~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc
Confidence 64110 0 0000111111 1221 233467777777777776643
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=4e-09 Score=87.84 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=64.0
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCC----cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~----srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999876543 378999999999999999999999999999999864
No 85
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.94 E-value=1.2e-08 Score=111.90 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=64.5
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
++|+|+|||++.|.+.|++-|..||.|+.+.| .++++| .|.|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 47999999999999999999999999999988 555554 99999999999999999999999999999873
No 86
>smart00360 RRM RNA recognition motif.
Probab=98.93 E-value=3.1e-09 Score=87.60 Aligned_cols=66 Identities=33% Similarity=0.649 Sum_probs=59.8
Q ss_pred ecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 253 VFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 253 V~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999763 3347899999999999999999999999999999874
No 87
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.2e-09 Score=108.22 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=71.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC--CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~--~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
..++|||+|||.++-+.||+++|-+||.|.+|.+.. ....||||+|++..+|+.||..-+|..++|++|+|+|++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 467899999999999999999999999999997743 335799999999999999999999999999999999997764
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=3.7e-09 Score=110.30 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..+|||+||++.+|+++|+++|+.||+|.+|++ .++.+|||||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 479999999999999999999999999999985 45677899999999999999996 99999999999887653
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.91 E-value=4.3e-09 Score=87.68 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=63.4
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCEEEEEecC----CcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 165 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 165 tLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~----kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
+|+|+|||..+++++|+++|+.||+|..+.+.. ..+|+|||+|.+.++|+.|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999988533 3489999999999999999999999999999988764
No 90
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.6e-09 Score=111.46 Aligned_cols=78 Identities=27% Similarity=0.346 Sum_probs=68.8
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
..-.+|||++|+..++.++|++.|++||+|.+..+ ++++||||||+|.|.++|.+|++. -.-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 34578999999999999999999999999999743 788999999999999999999985 356899999999988
Q ss_pred CCCc
Q 003329 321 RPGG 324 (829)
Q Consensus 321 ~~~~ 324 (829)
.-+.
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 7654
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=2.2e-09 Score=87.79 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=51.0
Q ss_pred HHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 180 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 180 Lr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|+|..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999875555799999999999999999999999999999999985
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=3.4e-09 Score=87.39 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.5
Q ss_pred EeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 168 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 168 V~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999998874 34568999999999999999999999999999888763
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.8e-09 Score=110.16 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=66.7
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit--~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
..+|||+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|++.++|+.|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999874 3456899999999999999995 999999999999987653
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.5e-10 Score=111.78 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=75.0
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
..++|||++|-.++++.-|...|-+||.|+.|.+ +.+.||||||+|.-.|+|.+||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3579999999999999999999999999999975 56789999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003329 322 PGGARR 327 (829)
Q Consensus 322 ~~~~rr 327 (829)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976543
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.86 E-value=3.2e-08 Score=107.04 Aligned_cols=164 Identities=20% Similarity=0.313 Sum_probs=134.8
Q ss_pred CCCCcEEEEeCCC--CCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccc--ccccccccc
Q 003329 160 EHPSRTLFVRNIN--SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 235 (829)
Q Consensus 160 e~~srtLfV~NLP--~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a 235 (829)
..++..|.+.-|. +.+|-+-|..+....|+|.+|.+..+..--|+|+|.+.+.|++|..+|||..|. -..|+|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 4556677776665 568999999999999999999988886667999999999999999999999886 358889888
Q ss_pred CCCCCCCC--------------------------------------------------------------------CC--
Q 003329 236 IPKDNPSD--------------------------------------------------------------------KD-- 245 (829)
Q Consensus 236 ~pk~~~~~--------------------------------------------------------------------~~-- 245 (829)
+|...... .+
T Consensus 197 kP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~ 276 (494)
T KOG1456|consen 197 KPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGR 276 (494)
T ss_pred CcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCC
Confidence 76421000 00
Q ss_pred --------CCcccceecccCCC-CCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 246 --------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 246 --------~~~~tLfV~NLp~~-vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
.....+.|.+|+.. +.-+.|..+|-.||.|..|+....+.|-|.|++.|..+.++|+..||+..+-|.+|.
T Consensus 277 g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 277 GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 00135788899854 567889999999999999998777889999999999999999999999999999999
Q ss_pred EEecCCC
Q 003329 317 LEPSRPG 323 (829)
Q Consensus 317 V~~a~~~ 323 (829)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998654
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-09 Score=110.95 Aligned_cols=79 Identities=27% Similarity=0.534 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...|+|||++|..+|+|.-|...|-+||+|..|.+ +.++||||||+|...++|..||..|++..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34799999999999999999999999999999984 6899999999999999999999999999999999999999
Q ss_pred CCCC
Q 003329 236 IPKD 239 (829)
Q Consensus 236 ~pk~ 239 (829)
.|..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8854
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.82 E-value=1e-08 Score=106.05 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=70.1
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
..+|||+|||.++|+++|+++|..||.|..+++ ++..+|||||+|.+.++|..|+..++|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988854 567899999999999999999999999999999999999765
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=2.5e-08 Score=108.03 Aligned_cols=159 Identities=13% Similarity=0.187 Sum_probs=112.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcc-----CC--EEEEE-ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~f-----G~--I~sv~-~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
-.|-+++||+++++.++.++|.+- |. |.-|+ ..++..|-|||.|..+++|+.|+.+ |...+..|-|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 467789999999999999999632 22 22232 2678889999999999999999984 333333332222110
Q ss_pred --------------CC--------C-----CCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEE---EE--e--C
Q 003329 236 --------------IP--------K-----DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE---IR--E--T 281 (829)
Q Consensus 236 --------------~p--------k-----~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~---vr--i--t 281 (829)
.| - ...........+|.+++||++.+.++|.++|..|..-+. |. + .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 00 0 000011123578999999999999999999998863222 22 2 4
Q ss_pred CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 282 PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 282 ~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
++..|-|||+|.+.++|..|....+.+...+|-|+|-.+.-.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 566788999999999999999988888888899998766443
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=1e-09 Score=108.55 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
-...+-|||+|||+++||.||..+|++||+|..|.+ ||+++||||..|+|.+...-|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 345678999999999999999999999999999954 789999999999999999999999999999999999975
Q ss_pred c
Q 003329 320 S 320 (829)
Q Consensus 320 a 320 (829)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=8.8e-09 Score=97.63 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=72.1
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
+......|||.++....|+++|.+.|..||+|+.+.+ ++--+|||+|+|++.++|++|+.+|||..+-|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3455678999999999999999999999999999965 56679999999999999999999999999999999999
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
|+--+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 87443
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=7.2e-09 Score=122.19 Aligned_cols=165 Identities=21% Similarity=0.338 Sum_probs=142.5
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecC----CcceEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRK 229 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~----kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 229 (829)
-....+...++|||++||+..+++.+|+..|..+|.|.+|.+.. ...-||||.|.+...+-.|..++.+..|..-.
T Consensus 363 v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 363 VLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred cccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 34445667789999999999999999999999999999998532 34458999999999999999999999998888
Q ss_pred ccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 003329 230 LDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 230 L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
+++.+..++ ......++|++|...+....|...|..||.|..|.+. +..-|++|.|.+...|+.|++.|.|..
T Consensus 443 ~r~glG~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 443 HRIGLGQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred ccccccccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCc
Confidence 888877653 2345679999999999999999999999999999874 456699999999999999999999999
Q ss_pred eCC--cEEEEEecCCCcc
Q 003329 310 IAG--KRIKLEPSRPGGA 325 (829)
Q Consensus 310 i~G--r~I~V~~a~~~~~ 325 (829)
|+| ++|.|.|+.+...
T Consensus 516 ~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPPGA 533 (975)
T ss_pred CCCCCcccccccccCCCC
Confidence 987 7899999887653
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=1.7e-08 Score=114.53 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=72.9
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+|||||+|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999974 7888999999999999999999999999999999999998766
Q ss_pred ccc
Q 003329 324 GAR 326 (829)
Q Consensus 324 ~~r 326 (829)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=115.33 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
+.|||+|||++++|++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999998 48999999999999999999999999999999999999998543
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.4e-09 Score=107.67 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.+.-|||+|||++.||.||.-+|++||+|..|. .|++++||||+.|+|.++...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 467899999999999999999999999999987 389999999999999999999999999999999999998654
Q ss_pred C
Q 003329 237 P 237 (829)
Q Consensus 237 p 237 (829)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.4e-08 Score=96.28 Aligned_cols=78 Identities=18% Similarity=0.476 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..-.|||.++...+||++|.+.|..||+|+.+.+ ++-.+|||+|+|.+.++|++|+..+||..|-+++|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 3468999999999999999999999999999873 67789999999999999999999999999999999999986
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
-+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 443
No 106
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.72 E-value=2.4e-08 Score=108.95 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=109.1
Q ss_pred CCchhhccCCCCCCCcccceeecCCC--------Ccccc----------------------CCcccccccCCCCCCCCCC
Q 003329 114 MDDFDLRGLPSSLEDLEDYDIFGSGG--------GMELE----------------------GEPQESLSMREHPYGEHPS 163 (829)
Q Consensus 114 ~de~~l~~lf~~lgeveev~vf~~~g--------G~~l~----------------------~~~~~~~~~ge~~~~e~~s 163 (829)
+++..|+..|..+|++.+|.++.+.. .+..+ .+.................
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~t 97 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRT 97 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccce
Confidence 58888999999999999999999621 11111 1111111112222222346
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
.+|||+.||.++++++|++.|++||.|..+. .+.+.+||+||.|.+.+++++++. .....|.++.+.|.-|.|+
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 6999999999999999999999999887775 367899999999999999999987 6778899999999999987
Q ss_pred CCCCCCCCCc-ccceecccCCCCCHHHHHHHhcccCCe
Q 003329 239 DNPSDKDLNQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV 275 (829)
Q Consensus 239 ~~~~~~~~~~-~tLfV~NLp~~vTeedL~~iFs~fG~I 275 (829)
+......... ......|+....+.-.|...|.-|+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 177 EVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPV 214 (311)
T ss_pred hhccccccccccccccccccccccccccchhccccCcc
Confidence 6533221111 112222344344444455555555543
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=98.67 E-value=5.7e-08 Score=83.46 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=50.2
Q ss_pred HHHHHHHhc----ccCCeEEEE---e---C--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEE
Q 003329 262 NEDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 262 eedL~~iFs----~fG~I~~vr---i---t--~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999884 2 2 667999999999999999999999999999999986
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=4.4e-08 Score=100.65 Aligned_cols=77 Identities=29% Similarity=0.588 Sum_probs=71.8
Q ss_pred ccceecccCCCCCHHHHHH----HhcccCCeEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~----iFs~fG~I~~vri--t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.||||.||+..+..++|+. +|++||+|.+|.. +++-||-|||.|++.+.|..|+++|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 4999999999999999888 9999999999975 567899999999999999999999999999999999999988
Q ss_pred Ccc
Q 003329 323 GGA 325 (829)
Q Consensus 323 ~~~ 325 (829)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 763
No 109
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.62 E-value=5.4e-08 Score=113.34 Aligned_cols=76 Identities=30% Similarity=0.538 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 239 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 239 (829)
+|||||+.|+..++|.||+++|+.||+|.+|.+ ...+|||||.+....+|.+|+.+|.+..+..+.|+|.|+.-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 789999999999999999999999999999975 5689999999999999999999999999999999999996543
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.2e-07 Score=103.47 Aligned_cols=158 Identities=20% Similarity=0.344 Sum_probs=112.5
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-------ecCCcce---EEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------TACKHRG---FVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-------~t~kskG---~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
....+++|||++||++++|++|...|..||.+..=. -....+| |+|+.|+++.+++.-+.+... ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 456688999999999999999999999999876321 1123566 999999999999987765322 333
Q ss_pred cccccccCCCCCC-------------------CCCCCCcccceecccCCCCCHHHHHHHhc-ccCCeEEEEeCC-----C
Q 003329 229 KLDIHFSIPKDNP-------------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRETP-----H 283 (829)
Q Consensus 229 ~L~V~~a~pk~~~-------------------~~~~~~~~tLfV~NLp~~vTeedL~~iFs-~fG~I~~vrit~-----~ 283 (829)
++.++.+.+.... ...-...+||||++||.-++.++|..+|+ -||.|..+-|.- -
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 3333332221111 11112457999999999999999999999 799999986532 2
Q ss_pred cccEEEEEEcCHHHHHHHHHH----hCCCeeCCcEEEEEec
Q 003329 284 KRHHKFIEFYDVRAAEAALKS----LNRSDIAGKRIKLEPS 320 (829)
Q Consensus 284 srG~aFVeF~~~e~A~kAl~~----LnG~~i~Gr~I~V~~a 320 (829)
.+|-|=|.|.+..+=.+||.+ |+..+| .|+|+|+..
T Consensus 412 PkGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPY 451 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPY 451 (520)
T ss_pred CCCcceeeecccHHHHHHHhhheEEEecccc-ceeeeecce
Confidence 588899999999999999874 222223 246666543
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=9.7e-08 Score=109.24 Aligned_cols=162 Identities=20% Similarity=0.353 Sum_probs=131.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcc-----------C-CEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~f-----------G-~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
...+.++|+++|..++++++-.+|..- | .|..+.+ ...+.|||++|.+.++|..|+. +++..+.|+
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~ 250 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEGR 250 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCCC
Confidence 446789999999999999999999854 3 3666654 6789999999999999999998 888888887
Q ss_pred cccccccCCCC-------------------CCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCc
Q 003329 229 KLDIHFSIPKD-------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHK 284 (829)
Q Consensus 229 ~L~V~~a~pk~-------------------~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~s 284 (829)
++.+.--.... ...........+||++||..+++++++++...||.++..++ ++.+
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 77654211100 00011123468999999999999999999999999888753 4678
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 285 RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 285 rG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
+||||.+|.+......|+..|||..+.+++|.|..+-.+.
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 9999999999999999999999999999999999887765
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=98.54 E-value=1.4e-07 Score=80.96 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=50.3
Q ss_pred HHHHHHHhh----ccCCEEEEE---e---c--CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 177 DSELRALFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 177 eeeLr~lFs----~fG~I~sv~---~---t--~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
+++|+++|+ +||.|.+|. + + ++++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999884 2 2 678999999999999999999999999999999875
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=2.1e-08 Score=118.01 Aligned_cols=142 Identities=14% Similarity=0.215 Sum_probs=120.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...++||+||++.+.+++|...|..+|.+..++ ..++.+|+|||.|..+++|.+|+.-.....+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h---------
Confidence 345799999999999999999999999887766 3578899999999999999999984333322 2
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
...|+|+|+|+.-|.++|+.++.++|.++++++ .++.+|.++|.|.+..+|.+++....+..+.-
T Consensus 736 -----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 -----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred -----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 346899999999999999999999999999864 36678999999999999999998888777777
Q ss_pred cEEEEEecCCCc
Q 003329 313 KRIKLEPSRPGG 324 (829)
Q Consensus 313 r~I~V~~a~~~~ 324 (829)
+.+.|..+.|..
T Consensus 805 ~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 805 NNGEVQVSNPER 816 (881)
T ss_pred cCccccccCCcc
Confidence 777777766533
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=1.8e-07 Score=109.14 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=74.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCccc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 326 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~~r 326 (829)
..+||||+.|+..+++.||..+|+.||+|.+|.+.+ .++||||.+..+.+|.+|+.+|+...+.++.|+|.|+..++-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 447999999999999999999999999999999864 6899999999999999999999999999999999999988876
Q ss_pred c
Q 003329 327 R 327 (829)
Q Consensus 327 r 327 (829)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 115
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.7e-07 Score=97.69 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=75.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.....|+|||-.||.+..+.||...|-.||.|.+.++ +..+|.|+||.|.++.+|+.||.++||..|.=++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3456899999999999999999999999999998873 78899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003329 234 FSIPKDN 240 (829)
Q Consensus 234 ~a~pk~~ 240 (829)
+.+|++.
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9988763
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.2e-07 Score=98.98 Aligned_cols=82 Identities=23% Similarity=0.450 Sum_probs=71.2
Q ss_pred CCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHh-cCCcccccccccc
Q 003329 155 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIH 233 (829)
Q Consensus 155 e~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~L-ng~~l~gr~L~V~ 233 (829)
..+..+...++|||++|-..++|.+|+++|.+||+|+++.+. ..+++|||+|.+.++|+.|..++ +...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345566678999999999999999999999999999999753 45789999999999999998765 5566789999999
Q ss_pred ccCC
Q 003329 234 FSIP 237 (829)
Q Consensus 234 ~a~p 237 (829)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=1.8e-07 Score=95.32 Aligned_cols=143 Identities=20% Similarity=0.309 Sum_probs=115.8
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...+||||.|+-..|+|+-|.++|-+-|+|..|.+ ..+.+ ||||.|.+.-+..-|++.+||..+.++.+.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34689999999999999999999999999999985 23444 99999999999999999999999999999887643
Q ss_pred CCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 237 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 237 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
-.. ..- |...++++.+...|+.-|.+..+++ .+..+.++|+.+....+.-.|+....+....-
T Consensus 86 G~s--------hap-----ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNS--------HAP-----LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCC--------cch-----hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 211 111 5667889999999999999988875 34578899999998888888888776666555
Q ss_pred cEEEE
Q 003329 313 KRIKL 317 (829)
Q Consensus 313 r~I~V 317 (829)
+++.+
T Consensus 153 ~~~~~ 157 (267)
T KOG4454|consen 153 KKVTI 157 (267)
T ss_pred CCccc
Confidence 54443
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=6.8e-07 Score=96.54 Aligned_cols=78 Identities=35% Similarity=0.517 Sum_probs=68.6
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCcEEEEEecCC
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~L-nG~~i~Gr~I~V~~a~~ 322 (829)
++..-.+|||++|...+++.+|+++|.+||+|.++++.. .+++|||+|.++++|+.|...+ +...|+|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 344557999999999999999999999999999999865 4569999999999999988655 55588999999999988
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.29 E-value=9.4e-07 Score=96.07 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=128.7
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
...+++|++++-..+.+.++..++..+|.+..+. -...++|+++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578999999999999999999999999766554 24578999999999999999999955444555554444333
Q ss_pred CCCCCC----C--CCCCCcccce-ecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003329 236 IPKDNP----S--DKDLNQGTLV-VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 303 (829)
Q Consensus 236 ~pk~~~----~--~~~~~~~tLf-V~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~ 303 (829)
...... . .......++| |.+|++++++++|+..|..+|.|..+++ ++..++||||+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 221110 0 0111234555 9999999999999999999999999976 45679999999999999999998
Q ss_pred HhCCCeeCCcEEEEEecCCCcc
Q 003329 304 SLNRSDIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 304 ~LnG~~i~Gr~I~V~~a~~~~~ 325 (829)
. ....+.++.+.|.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999877643
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.3e-06 Score=94.17 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..|...|||.-|.+-+|+++|.-+|+.||.|.+|.+ ++.+..||||+|.+.+++++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 467889999999999999999999999999999973 677889999999999999999999999999999999999
Q ss_pred cCC
Q 003329 235 SIP 237 (829)
Q Consensus 235 a~p 237 (829)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 753
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.7e-06 Score=93.44 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=71.4
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 321 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~ 321 (829)
+...|||--|.+-+|+++|.-||+.||.|.+|.+ ++.+-.||||+|++.+++++|.-.|+...|+.++|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4678999999999999999999999999999965 56677899999999999999999999999999999999987
Q ss_pred CCc
Q 003329 322 PGG 324 (829)
Q Consensus 322 ~~~ 324 (829)
.-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 644
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=4e-06 Score=85.28 Aligned_cols=79 Identities=18% Similarity=0.373 Sum_probs=70.8
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhcc-CCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~f-G~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
......++|..+|..+-+.++..+|.+| |.|+.+++ |+.++|||||+|.+.+.|+-|-++||+..|.++-|.|+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446789999999999999999999999 77777773 88999999999999999999999999999999999999
Q ss_pred ccCCC
Q 003329 234 FSIPK 238 (829)
Q Consensus 234 ~a~pk 238 (829)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87553
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.15 E-value=5.1e-06 Score=84.52 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCcccceecccCCCCCHHHHHHHhccc-CCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 245 DLNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vTeedL~~iFs~f-G~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
....+-++|..+|.-+.+.++...|.+| |.|..+|+ ||.++|||||+|++.+.|.-|-+.||++.+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 77888876 78899999999999999999999999999999999999
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 88776
No 124
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2.3e-06 Score=88.72 Aligned_cols=70 Identities=24% Similarity=0.477 Sum_probs=65.9
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
.+||++||+.+.+.+|..+|..||.|..+.+. .||+||+|.+..+|..|+..|+++++.|.++.|++++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 58999999999999999999999999999874 68999999999999999999999999998899999884
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.11 E-value=2.2e-06 Score=89.31 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=112.6
Q ss_pred EEEeCCCCCCcHHH-H--HHHhhccCCEEEEE----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003329 166 LFVRNINSNVEDSE-L--RALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 238 (829)
Q Consensus 166 LfV~NLP~~vTeee-L--r~lFs~fG~I~sv~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 238 (829)
+++.++-.++..+- | ...|+.|-.+...+ ...+-++++|+.|.....-.++-..-+++++.-+++++.-....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34444444444433 2 44555444433322 24567889999999998888888877777777776665433332
Q ss_pred CCCC--CCCCCcccceecccCCCCCHHHHHHHhcccCCeEE---E--EeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 003329 239 DNPS--DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE---I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 311 (829)
Q Consensus 239 ~~~~--~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~---v--rit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~ 311 (829)
.++. +-+..+-+||.+.|..+++++.|-..|.+|-.... | .-+++++||+||.|.+..++.+|+++|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 2222 23345678999999999999999999999853322 2 337889999999999999999999999999999
Q ss_pred CcEEEEEecCCCc
Q 003329 312 GKRIKLEPSRPGG 324 (829)
Q Consensus 312 Gr~I~V~~a~~~~ 324 (829)
.+.|++.-+.-+.
T Consensus 259 srpiklRkS~wke 271 (290)
T KOG0226|consen 259 SRPIKLRKSEWKE 271 (290)
T ss_pred cchhHhhhhhHHh
Confidence 9999886554433
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.04 E-value=6.4e-06 Score=93.20 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.3
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
++|||.+|...+-..+|+.+|++||+|+-.++ ++..+.|+||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999987764 344588999999999999999999999999999999998764
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.00 E-value=4.1e-06 Score=85.06 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=60.6
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee--cccc--ccceeEEEEEecCCcccHHHHHHHhcCCcccCCC
Q 003329 663 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDFK--NKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN 738 (829)
Q Consensus 663 d~rTTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Ylp--~df~--~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~ 738 (829)
..++.|.||+||+.+|.+.+++.|+......++|-|++ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999999998887666666666665 2222 3344567999999999999999999999998654
Q ss_pred C-ccEEEEEeeeccc
Q 003329 739 S-EKVASLAYARIQG 752 (829)
Q Consensus 739 s-~k~~~v~~A~iQG 752 (829)
. .-++.|.||--|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 3 4889999998764
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.00 E-value=1.3e-05 Score=84.71 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.-.++|+|.|||+.|+++||++||..||++..+-+ .+++.|+|-|.|...++|..|++.+++..+.|+.|.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 33578999999999999999999999998888764 67899999999999999999999999999999998888764
Q ss_pred C
Q 003329 237 P 237 (829)
Q Consensus 237 p 237 (829)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 129
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.99 E-value=1.3e-05 Score=93.02 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=74.6
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe--------cCCcceEEEEEEcCHHHHHHHHHHhcCCcc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPL 225 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~--------t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l 225 (829)
|....++..+++|||+||++.++++.|...|..||+|..|++ ..+.+-|+||.|.+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 444456677899999999999999999999999999999984 345677999999999999999999999999
Q ss_pred ccccccccccCC
Q 003329 226 RRRKLDIHFSIP 237 (829)
Q Consensus 226 ~gr~L~V~~a~p 237 (829)
.+..+++.|+++
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999999854
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.98 E-value=7.5e-07 Score=97.83 Aligned_cols=150 Identities=18% Similarity=0.346 Sum_probs=122.1
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcc--CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCC-ccccccccccccCCCCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 240 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~f--G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~ 240 (829)
..||++||.+.++.++|+.+|..- +--..+ -...||+||.+.+...|.+|++.++|+ .+.|+++.+.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999753 111111 124699999999999999999999985 48899999999887654
Q ss_pred CCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCc--ccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 241 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 241 ~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~s--rG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
. .+++-|.|+|+....+-|..+...||.|..|..+... .-..-|+|...+.++.||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 3459999999999999999999999999998643221 2234578899999999999999999999988888
Q ss_pred ecCC
Q 003329 319 PSRP 322 (829)
Q Consensus 319 ~a~~ 322 (829)
|--.
T Consensus 153 YiPd 156 (584)
T KOG2193|consen 153 YIPD 156 (584)
T ss_pred cCch
Confidence 7543
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.93 E-value=3.8e-05 Score=78.87 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=65.8
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEE--EEeCCCc----ccEEEEEEcCHHHHHHHHHHhCCCeeC---CcEEEE
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETPHK----RHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKL 317 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~--vrit~~s----rG~aFVeF~~~e~A~kAl~~LnG~~i~---Gr~I~V 317 (829)
.-+||||.+||.++...||..+|..|-.-+. ++.+.+. +-+|||.|.+..+|.+|+++|||..++ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999998843333 3555433 368999999999999999999999886 688999
Q ss_pred EecCCCcc
Q 003329 318 EPSRPGGA 325 (829)
Q Consensus 318 ~~a~~~~~ 325 (829)
++++....
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99887654
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.92 E-value=1.3e-05 Score=90.81 Aligned_cols=77 Identities=18% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..-.++|||.+|...+-..+|+.||++||+|.-.++ +.-.+.|+||++.+..+|.+||..|+.+.|+|+.|.|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345789999999999999999999999999987663 334677999999999999999999999999999999987
Q ss_pred cC
Q 003329 235 SI 236 (829)
Q Consensus 235 a~ 236 (829)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 64
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.81 E-value=5e-05 Score=80.43 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.9
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
...+|+|.|||..|+++||+++|..||.++.+-+ .+.+.|.|=|.|...++|.+|++.++|..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998888754 567789999999999999999999999999999999988766
Q ss_pred Cc
Q 003329 323 GG 324 (829)
Q Consensus 323 ~~ 324 (829)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 134
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.81 E-value=0.00013 Score=82.54 Aligned_cols=154 Identities=12% Similarity=0.211 Sum_probs=103.3
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEE-EE----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc-
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS- 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~s-v~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a- 235 (829)
..-.|-+++||+.||++||.++|+-.--|.. +. -.+++.|-|||+|.+.+.|++|+.. +...|..|-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 4568999999999999999999996543333 11 2456788999999999999999973 334443333322110
Q ss_pred ----------------------CCCCCCC---------------C-----------------------------CC----
Q 003329 236 ----------------------IPKDNPS---------------D-----------------------------KD---- 245 (829)
Q Consensus 236 ----------------------~pk~~~~---------------~-----------------------------~~---- 245 (829)
.+..... . ++
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 0000000 0 00
Q ss_pred C-----------------Cc-ccceecccCCCCCHHHHHHHhcccCCe---EEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003329 246 L-----------------NQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV---KEIRETPHKRHHKFIEFYDVRAAEAALKS 304 (829)
Q Consensus 246 ~-----------------~~-~tLfV~NLp~~vTeedL~~iFs~fG~I---~~vrit~~srG~aFVeF~~~e~A~kAl~~ 304 (829)
. .. ..++-++||+..++.++..+|+..-.+ .+|...++..|-|+|+|.+.++|..|+-.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhcc
Confidence 0 00 246678999999999999999865332 22223566778899999999999999974
Q ss_pred hCCCeeCCcEEEE
Q 003329 305 LNRSDIAGKRIKL 317 (829)
Q Consensus 305 LnG~~i~Gr~I~V 317 (829)
++..+..+-|.+
T Consensus 341 -d~anm~hrYVEl 352 (510)
T KOG4211|consen 341 -DGANMGHRYVEL 352 (510)
T ss_pred -CCcccCcceeee
Confidence 566666666654
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=3.3e-05 Score=87.77 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.6
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit-----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
.+|||+|||.+++.++|+++|..||.|+..+|. ++...||||+|++.++++.||.+ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999998652 22338999999999999999996 567889999999877665
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=2.8e-05 Score=90.44 Aligned_cols=78 Identities=28% Similarity=0.380 Sum_probs=70.0
Q ss_pred CCcccceecccCCCCCHHHHHHHhcccCCeEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEE
Q 003329 246 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit--------~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
...++|||+||++.++++.|...|+.||.|..+++. ...+.+|||-|.+..+|++|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 445799999999999999999999999999999762 234779999999999999999999999999999999
Q ss_pred EecCCC
Q 003329 318 EPSRPG 323 (829)
Q Consensus 318 ~~a~~~ 323 (829)
-|++.-
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 998653
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.77 E-value=3.1e-05 Score=87.91 Aligned_cols=74 Identities=23% Similarity=0.379 Sum_probs=62.0
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEe---c--CCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~---t--~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
...+|||+|||.++++++|+++|.+||+|+...+ . .+...||||+|.+.++++.|+.+ +-..+.+++|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3456999999999999999999999999998763 2 34448999999999999999995 4667788888887543
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.67 E-value=0.00016 Score=66.48 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=59.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcc--CCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccc----cccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 232 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~f--G~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~----gr~L~V 232 (829)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+++.|.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999753 4444344 25678999999999999999999999998875 355566
Q ss_pred cccC
Q 003329 233 HFSI 236 (829)
Q Consensus 233 ~~a~ 236 (829)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.62 E-value=0.00011 Score=79.78 Aligned_cols=74 Identities=14% Similarity=0.314 Sum_probs=65.8
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEE--------Ee----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--------RE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v--------ri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
+..|||+|||.++|.+++.++|++||.|..= ++ .|+-+|=|.|.|...++..-|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4569999999999999999999999988652 22 35668889999999999999999999999999999
Q ss_pred EEEecC
Q 003329 316 KLEPSR 321 (829)
Q Consensus 316 ~V~~a~ 321 (829)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999775
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.61 E-value=6.6e-05 Score=79.43 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCCCcccceecccCCCCCHHHHHHHhcccCCeEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEE
Q 003329 244 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 318 (829)
Q Consensus 244 ~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-----it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~ 318 (829)
+.+....+||+|+++.+|.+++..+|+.||.|..+. ..++.+||+||+|.+.+.+++|++ |+|..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345567899999999999999999999999997554 355689999999999999999999 99999999999998
Q ss_pred ecCCC
Q 003329 319 PSRPG 323 (829)
Q Consensus 319 ~a~~~ 323 (829)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 76543
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.59 E-value=2.4e-05 Score=85.69 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=117.6
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEec--------CCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t--------~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..|-|.||.+.+|.++++.||.-.|+|..+.+. ......|||.|.|...+..|.. |.++.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999988742 3456789999999999998876 7787777776655332
Q ss_pred CCCC-----------------------------CCCCC--C-------------------C--CcccceecccCCCCCHH
Q 003329 236 IPKD-----------------------------NPSDK--D-------------------L--NQGTLVVFNLDPSVSNE 263 (829)
Q Consensus 236 ~pk~-----------------------------~~~~~--~-------------------~--~~~tLfV~NLp~~vTee 263 (829)
.... .+... . + -..+++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1000 00000 0 0 01479999999999999
Q ss_pred HHHHHhcccCCeEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 264 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 264 dL~~iFs~fG~I~~vrit-~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
++-+.|..+|+|...+.. +....+|.|+|........|++ ++|.++.-....+....|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 999999999999998763 3345678899999999999998 5777776444444444443
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=0.00022 Score=63.27 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=48.8
Q ss_pred ccceecccCCCCCHHH----HHHHhcccC-CeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCC
Q 003329 249 GTLVVFNLDPSVSNED----LRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 323 (829)
Q Consensus 249 ~tLfV~NLp~~vTeed----L~~iFs~fG-~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~ 323 (829)
..|+|.|||.+.+... |++++..+| .|.+|. .+-|+|.|.+.+.|++|.+.|+|..+.|.+|.|+|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4689999999887654 677777885 666663 367999999999999999999999999999999998543
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.51 E-value=0.00029 Score=62.54 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=49.1
Q ss_pred cEEEEeCCCCCCcHHH----HHHHhhccC-CEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 164 RTLFVRNINSNVEDSE----LRALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 164 rtLfV~NLP~~vTeee----Lr~lFs~fG-~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
+.|+|.|||.+.+... |+.|+..|| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 5799999999988766 556777776 67666 36899999999999999999999999999999999974
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.49 E-value=0.0009 Score=73.55 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=108.0
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhcc-----CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~f-----G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..+..+-.++||+..++.+|..+|.-. |.+......++..|.|.|.|.|.+.-+.|++ -+...+.++.|.|--+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345677889999999999999999732 3333333467788999999999999999998 4555566777666544
Q ss_pred CCCCC---------CC---CCCCCcccceecccCCCCCHHHHHHHhccc----CC---eEEEEe-CCCcccEEEEEEcCH
Q 003329 236 IPKDN---------PS---DKDLNQGTLVVFNLDPSVSNEDLRQIFGAY----GE---VKEIRE-TPHKRHHKFIEFYDV 295 (829)
Q Consensus 236 ~pk~~---------~~---~~~~~~~tLfV~NLp~~vTeedL~~iFs~f----G~---I~~vri-t~~srG~aFVeF~~~ 295 (829)
...+- .. -...++-.|..++||++.++.|+.++|.+- |. |.-|+- .++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 32211 00 011234467789999999999999999632 22 233332 566788899999999
Q ss_pred HHHHHHHHHhCCCeeCCcEEEE
Q 003329 296 RAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 296 e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
++|+.||.. |...|+-|-|+|
T Consensus 217 e~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHH
Confidence 999999985 444454455544
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.48 E-value=0.00014 Score=84.52 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhc-cCC---EEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQ-YGD---IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~-fG~---I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..++.+-+++.+.+.++.+++++|.- +-. |..-.+.....|-++|.|....++++|++ -+...+..|.+.|..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34556667899999999999999963 211 22222445558999999999999999987 45555556655543321
Q ss_pred CC------------CC-------------CCC----------CCCCcccceecccCCCCCHHHHHHHhcccCCeEE-EEe
Q 003329 237 PK------------DN-------------PSD----------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE 280 (829)
Q Consensus 237 pk------------~~-------------~~~----------~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~-vri 280 (829)
.. .. +.. ......+|||..||..+++.++.+.|..--.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 00 00 000 0012258999999999999999999998777766 555
Q ss_pred C----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 281 T----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 281 t----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
+ ++.++.|||+|...+++.+|+..-..+.++-+.|+|.-...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 3 45578899999999999999987666677778999975443
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.40 E-value=0.00016 Score=76.45 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=68.7
Q ss_pred CCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 159 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.+...+.+||+|+...+|.+++...|+.||.|..+. ..+.++||+||+|.+.+.+++|+. |++..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345678999999999999999999999999997555 355689999999999999999999 99999999999988
Q ss_pred ccC
Q 003329 234 FSI 236 (829)
Q Consensus 234 ~a~ 236 (829)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 764
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.35 E-value=0.00023 Score=74.63 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=64.7
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEE-----EecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv-----~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..-.||.+.|..+++++-|-..|.+|-..... +.+++++||+||.|.++.++..|+++++|+.+..++|++.-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 35689999999999999999999998653322 258999999999999999999999999999999999987654
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.26 E-value=0.0002 Score=73.55 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=66.6
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCC----CcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~----~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
...||||.|+-..++++-|.++|-+-|.|.+|.|.. +.+ ||||.|.++-...-|++.|||..+.+..|.|++-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 467999999999999999999999999999998742 234 999999999999999999999999999999877543
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.18 E-value=0.00064 Score=63.45 Aligned_cols=69 Identities=29% Similarity=0.465 Sum_probs=44.2
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-----eeCCcEEEEEe
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-----DIAGKRIKLEP 319 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~-----~i~Gr~I~V~~ 319 (829)
.|.|.+++..++.++|++.|+.||.|..|.+.. ...-|+|+|.+.++|++|+..+.-. .|.+..+.++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578899999999999999999999999999864 3447999999999999999877533 55666665544
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.0002 Score=85.36 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=115.0
Q ss_pred CcEEEEeCCCCCCcHH-HHHHHhhccCCEEEEEecC----Ccce-EEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 163 SRTLFVRNINSNVEDS-ELRALFEQYGDIRTLYTAC----KHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 163 srtLfV~NLP~~vTee-eLr~lFs~fG~I~sv~~t~----kskG-~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
.+...+.++-+...+. ..+..|..+|.|+.|+... .+.+ +.++.+....+++.|.. ..+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 4567788887776665 6789999999999997422 2333 78899999999999887 67888888888888877
Q ss_pred CCCCCCCCCC------CcccceecccCCCCCHHHHHHHhcccCCeEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003329 237 PKDNPSDKDL------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 237 pk~~~~~~~~------~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vri-----t~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
+......... ...++||+||+..+.+.+|...|..+|.+..+++ .++-+|+|||+|...++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 6543222111 1258999999999999999999999998888754 3566899999999999999999865
Q ss_pred CCCeeC
Q 003329 306 NRSDIA 311 (829)
Q Consensus 306 nG~~i~ 311 (829)
.++.++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555544
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.89 E-value=0.00082 Score=74.57 Aligned_cols=101 Identities=26% Similarity=0.358 Sum_probs=81.2
Q ss_pred ccceecccCCCCCHHHHHHHhccc--CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-eeCCcEEEEEecCCCcc
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGA 325 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~f--G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~-~i~Gr~I~V~~a~~~~~ 325 (829)
.+||++||.+.++..+|+.+|... +--..+- .+.||+||.+.+...|.+|++.++|+ ++.|+++.|..+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999754 1111122 24689999999999999999999998 89999999999988775
Q ss_pred c--chhccccchhhcHHHHHHHHhhcCCC
Q 003329 326 R--RNLMLQLNQELEQDESRILQHQVGSP 352 (829)
Q Consensus 326 r--r~~~~ql~~~~~~~~l~~~f~~~GsP 352 (829)
+ +..+++.++++..+-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 4 33567777888778788887788755
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.82 E-value=0.0034 Score=68.05 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=62.7
Q ss_pred CcccceecccCCCCCHHH----H--HHHhcccCCeEEEEeCCCc------cc-E-EEEEEcCHHHHHHHHHHhCCCeeCC
Q 003329 247 NQGTLVVFNLDPSVSNED----L--RQIFGAYGEVKEIRETPHK------RH-H-KFIEFYDVRAAEAALKSLNRSDIAG 312 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeed----L--~~iFs~fG~I~~vrit~~s------rG-~-aFVeF~~~e~A~kAl~~LnG~~i~G 312 (829)
...-+||-+|++.+-.++ | .++|++||.|+.|.+..+. .+ + .||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999887766 2 5799999999999764321 22 2 3999999999999999999999999
Q ss_pred cEEEEEecCCC
Q 003329 313 KRIKLEPSRPG 323 (829)
Q Consensus 313 r~I~V~~a~~~ 323 (829)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987654
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.47 E-value=0.0034 Score=70.18 Aligned_cols=66 Identities=33% Similarity=0.473 Sum_probs=56.0
Q ss_pred CCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCC------------------cccEEEEEEcCHHHHHHHHHH
Q 003329 243 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALKS 304 (829)
Q Consensus 243 ~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~------------------srG~aFVeF~~~e~A~kAl~~ 304 (829)
.+....++|.+-|||.+-..+.|.+||+.+|.|+.|||..- .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34467789999999999999999999999999999987321 155799999999999999997
Q ss_pred hCCC
Q 003329 305 LNRS 308 (829)
Q Consensus 305 LnG~ 308 (829)
|+-.
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 154
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.44 E-value=0.0029 Score=70.70 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=58.5
Q ss_pred CCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCC------------------cceEEEEEEcCHHHHHHH
Q 003329 155 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTA 216 (829)
Q Consensus 155 e~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~k------------------skG~AFV~F~d~e~A~~A 216 (829)
+....+-++++|.+-|||.+-.-+.|.++|+.+|.|..|++-.. .+-+|+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 44455668999999999999999999999999999999985111 255799999999999999
Q ss_pred HHHhcCCcc
Q 003329 217 MRALQNKPL 225 (829)
Q Consensus 217 i~~Lng~~l 225 (829)
.+.|+...-
T Consensus 303 ~e~~~~e~~ 311 (484)
T KOG1855|consen 303 RELLNPEQN 311 (484)
T ss_pred HHhhchhhh
Confidence 997755443
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.44 E-value=0.0078 Score=56.24 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=39.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 223 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~ 223 (829)
+.|.|.+++..++-++|+++|++||+|..|.. .+....|||.|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46899999999999999999999999999874 334557999999999999999987543
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.0046 Score=67.11 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCcHHHH------HHHhhccCCEEEEEecCCc------ce-E-EEEEEcCHHHHHHHHHHhcCCcccc
Q 003329 162 PSRTLFVRNINSNVEDSEL------RALFEQYGDIRTLYTACKH------RG-F-VMISYYDIRAARTAMRALQNKPLRR 227 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeL------r~lFs~fG~I~sv~~t~ks------kG-~-AFV~F~d~e~A~~Ai~~Lng~~l~g 227 (829)
...-+||-+||+.+..+++ .++|.+||.|..|.+..+. .+ + +||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3467899999999988873 4899999999998753321 12 2 5999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCcccceecccC
Q 003329 228 RKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 257 (829)
Q Consensus 228 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 257 (829)
|.|+..|...+ -++-|++|++
T Consensus 193 r~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 193 RVLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred ceEeeecCchH---------HHHHHHcCCC
Confidence 99999886432 3556666654
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.38 E-value=0.0083 Score=49.09 Aligned_cols=53 Identities=19% Similarity=0.432 Sum_probs=43.5
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHH
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 217 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai 217 (829)
++.|-|.+.+++..+ +++..|..||+|..+... ...-+.+|+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 367889998877665 455599999999999864 45778999999999999985
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.36 E-value=0.0048 Score=67.91 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE-------------ecCCcceEEEEEEcCHHHHHHHHHHhcCCccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 226 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~-------------~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~ 226 (829)
....-+|||-+||..+++.+|.++|.++|.|..=+ .|.+.||-|.|.|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999886533 36789999999999999999999999999999
Q ss_pred cccccccccCC
Q 003329 227 RRKLDIHFSIP 237 (829)
Q Consensus 227 gr~L~V~~a~p 237 (829)
+.+|+|.++..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999888753
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.27 E-value=0.0057 Score=64.55 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEE----EeCCCccc
Q 003329 211 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRH 286 (829)
Q Consensus 211 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~v----rit~~srG 286 (829)
.-|..|..+|.+....++.|+|.|+. .+.|||.||..-++.+.|.+.|+.||.|... +..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~-----------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM-----------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec-----------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 35778888899999999999999984 2579999999999999999999999988653 33455667
Q ss_pred EEEEEEcCHHHHHHHHHHhCCC
Q 003329 287 HKFIEFYDVRAAEAALKSLNRS 308 (829)
Q Consensus 287 ~aFVeF~~~e~A~kAl~~LnG~ 308 (829)
-++|+|...-.|.+|+..+...
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cchhhhhcchhHHHHHHHhccC
Confidence 7999999999999999987543
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.24 E-value=0.0073 Score=49.43 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=42.3
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHH
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 302 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl 302 (829)
+.|.|.+.+.+..+. +...|..||+|..+.+. ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 357788888776654 55588899999999986 45678999999999999996
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.23 E-value=0.0038 Score=68.66 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=69.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEE-------------eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 313 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr-------------it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr 313 (829)
...++||.+|+..+++++|.++|.++|.|+.=+ ++...|+-|.|.|+|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 457999999999999999999999999886532 3566789999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 003329 314 RIKLEPSRPGG 324 (829)
Q Consensus 314 ~I~V~~a~~~~ 324 (829)
.|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887655
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.05 E-value=0.014 Score=54.14 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=52.1
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEE------------eCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcE-
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR- 314 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vr------------it~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~- 314 (829)
..-|.|.+.|+. ....+.+.|++||+|.+.. -......+-.|+|++..+|++||+ -||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999888 5567788999999998885 122356789999999999999998 4999999854
Q ss_pred EEEEecC
Q 003329 315 IKLEPSR 321 (829)
Q Consensus 315 I~V~~a~ 321 (829)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466663
No 163
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.03 E-value=0.0037 Score=69.44 Aligned_cols=73 Identities=19% Similarity=0.402 Sum_probs=60.4
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee-cccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccC
Q 003329 663 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEK 736 (829)
Q Consensus 663 d~rTTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Ylp-~df~~~-~n~gyaFinf~~~~~~~~f~~~f~g~~w~~ 736 (829)
+....|.||++|+++|...|+..||- +...+.|-|+- -|+... |-.+.|||||..+.++..|...|+|+..=.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 44578999999999999999999999 88888888765 554433 225569999999999999999999987654
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.00 E-value=0.0042 Score=65.49 Aligned_cols=68 Identities=21% Similarity=0.452 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecC-------------Ccce--E--EEEEEcCHHHHHHHHHHhcCCc
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-------------KHRG--F--VMISYYDIRAARTAMRALQNKP 224 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~-------------kskG--~--AFV~F~d~e~A~~Ai~~Lng~~ 224 (829)
..-.||+.+||+.+...-||++|++||+|.+|++.. ..++ | |.|+|.+.+.|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999999999998421 1222 2 8899999999999999999999
Q ss_pred ccccc
Q 003329 225 LRRRK 229 (829)
Q Consensus 225 l~gr~ 229 (829)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 165
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.95 E-value=0.012 Score=68.99 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=60.9
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEE-EEE----ecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIR-TLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 233 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~-sv~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~ 233 (829)
.+.|-+.|+|.+++.+||.++|..|-.+. +|. ..++..|-|.|-|++.++|..|...|+++.|..+++++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34899999999999999999999996432 122 467788999999999999999999999999999988764
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.70 E-value=0.0049 Score=64.98 Aligned_cols=68 Identities=29% Similarity=0.498 Sum_probs=58.6
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCC-------------cc--cE--EEEEEcCHHHHHHHHHHhCCCe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-------------KR--HH--KFIEFYDVRAAEAALKSLNRSD 309 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~-------------sr--G~--aFVeF~~~e~A~kAl~~LnG~~ 309 (829)
..+.||+++||+.+...-|++||+.||.|-.|.+.+. +. .| |.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4688999999999999999999999999999865321 11 12 7899999999999999999999
Q ss_pred eCCcE
Q 003329 310 IAGKR 314 (829)
Q Consensus 310 i~Gr~ 314 (829)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 167
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.66 E-value=0.022 Score=68.88 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCchhhccCCCCCCCcccceeecCCCCcccc------------------------CCcccccccCCCCCCCCCCcEEEEe
Q 003329 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELE------------------------GEPQESLSMREHPYGEHPSRTLFVR 169 (829)
Q Consensus 114 ~de~~l~~lf~~lgeveev~vf~~~gG~~l~------------------------~~~~~~~~~ge~~~~e~~srtLfV~ 169 (829)
+++.+++..|..+|.++++++-...-+.... ........+|.. ...+++.++|+
T Consensus 384 l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--kst~ttr~~sg 461 (975)
T KOG0112|consen 384 LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--KSTPTTRLQSG 461 (975)
T ss_pred hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc--ccccceeeccC
Confidence 5677788888888888888765542111100 000000111221 45678899999
Q ss_pred CCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCC
Q 003329 170 NINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 238 (829)
Q Consensus 170 NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk 238 (829)
+|++.+....|...|..||.|+.|.. .+..-||+|.|.+...|+.|++.+.|..|.+ +.|.|.|+.+.
T Consensus 462 glg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 462 GLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred CCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 99999999999999999999999864 4566799999999999999999999999985 67888887653
No 168
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.65 E-value=0.0098 Score=65.06 Aligned_cols=76 Identities=20% Similarity=0.411 Sum_probs=67.5
Q ss_pred CcEEE-EeCCCCCCcHHHHHHHhhccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003329 163 SRTLF-VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 236 (829)
Q Consensus 163 srtLf-V~NLP~~vTeeeLr~lFs~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 236 (829)
..++| |++|+.++++++|+.+|..+|.|..+++ ++..+|||+|.|.+...+..|+.. +...+.++++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 9999999999999999999999999983 678999999999999999999987 8889999999999886
Q ss_pred CCC
Q 003329 237 PKD 239 (829)
Q Consensus 237 pk~ 239 (829)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.38 E-value=0.024 Score=61.91 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=57.9
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCC--EEEEE-----ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~--I~sv~-----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.-.+||+||-|.+|++||.+....-|- +.+++ ..+.+||||+|..-+..+.++.|+.|-.+.|+|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 457999999999999999998887662 33332 57899999999999999999999999888888875444
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.18 E-value=0.01 Score=62.76 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=51.1
Q ss_pred HHHHHHhc-ccCCeEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 263 EDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 263 edL~~iFs-~fG~I~~vrit----~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
+++...|+ +||+|+++.+. .+-+|-++|.|...++|++|+..||+..+.|++|..+++.-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555556 89999998653 2347889999999999999999999999999999999875443
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.04 E-value=0.048 Score=50.57 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEE------------ecCCcceEEEEEEcCHHHHHHHHHHhcCCccccc-
Q 003329 162 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 228 (829)
Q Consensus 162 ~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~------------~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr- 228 (829)
..+.|.|=+.|+. ....|.+.|++||+|.+.. -.........|.|.++.+|++|++ .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567899999887 6678889999999998875 123355689999999999999999 799999875
Q ss_pred cccccccC
Q 003329 229 KLDIHFSI 236 (829)
Q Consensus 229 ~L~V~~a~ 236 (829)
.+-|.|+.
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 44466653
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.89 E-value=0.071 Score=61.74 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=57.7
Q ss_pred CCcccceecccCCCCC------HHHHHHHhcccCCeEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CcE
Q 003329 246 LNQGTLVVFNLDPSVS------NEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKR 314 (829)
Q Consensus 246 ~~~~tLfV~NLp~~vT------eedL~~iFs~fG~I~~vri----t~~srG~aFVeF~~~e~A~kAl~~LnG~~i~-Gr~ 314 (829)
.-...++|.|+|.--. ..-|.++|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.++ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456889999884321 2457889999999888754 4568999999999999999999999999886 466
Q ss_pred EEEE
Q 003329 315 IKLE 318 (829)
Q Consensus 315 I~V~ 318 (829)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.069 Score=61.80 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCCCc------HHHHHHHhhccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCccc-ccccc
Q 003329 163 SRTLFVRNINSNVE------DSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 231 (829)
Q Consensus 163 srtLfV~NLP~~vT------eeeLr~lFs~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~-gr~L~ 231 (829)
...|+|.|+|.--. ..-|..+|+++|+|..++. .+..+||.|++|.+.++|+.|++.|+|+.|. ..++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 47889999884321 2336689999999998873 4669999999999999999999999998875 33444
Q ss_pred c
Q 003329 232 I 232 (829)
Q Consensus 232 V 232 (829)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 3
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.43 E-value=0.23 Score=46.88 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=66.1
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeccccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccE
Q 003329 663 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKV 742 (829)
Q Consensus 663 d~rTTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~ 742 (829)
..+|+|-+=-+|+.++..+++..+-+.+.....-+.+.-|.. -|.-=+-|-|.+..+|..||+.|||++.+..-. -+
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~ 86 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ET 86 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-ce
Confidence 344666666899999988777666677776666666655543 466669999999999999999999999987765 45
Q ss_pred EEEEe-eecc
Q 003329 743 ASLAY-ARIQ 751 (829)
Q Consensus 743 ~~v~~-A~iQ 751 (829)
|.|.| .+||
T Consensus 87 ChvvfV~~Ve 96 (110)
T PF07576_consen 87 CHVVFVKSVE 96 (110)
T ss_pred eEEEEEEEEE
Confidence 99998 4555
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.41 E-value=0.13 Score=58.44 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=70.7
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeccccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003329 665 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 744 (829)
Q Consensus 665 rTTvMirNIPnk~t~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 744 (829)
-|+|-|=-||+.+|..+|+..+.....---|+--++ | .--|.--+-|-|.+..+|..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 589999999999999999999998888888888888 3 445555689999999999999999999999887766 999
Q ss_pred EEeee
Q 003329 745 LAYAR 749 (829)
Q Consensus 745 v~~A~ 749 (829)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.16 E-value=0.022 Score=60.30 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=48.3
Q ss_pred HHHHHHhh-ccCCEEEEEe----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 178 SELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 178 eeLr~lFs-~fG~I~sv~~----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
++|...|+ +||+|+.+.+ ...-.|-+||.|...++|++|+..||+..+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444555 9999998863 3346788999999999999999999999999999998876
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.95 E-value=0.16 Score=50.11 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=53.1
Q ss_pred CCcccceecccCC-----CCCH----HHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEE
Q 003329 246 LNQGTLVVFNLDP-----SVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 316 (829)
Q Consensus 246 ~~~~tLfV~NLp~-----~vTe----edL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~ 316 (829)
...+|+.|.=+.+ ..-. .+|.+.|..||+|.-+|..+ +.-.|+|.+-+.|.+|+. |+|.++.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 3456777764441 1222 37888999999999999865 357899999999999997 899999999999
Q ss_pred EEecCCCc
Q 003329 317 LEPSRPGG 324 (829)
Q Consensus 317 V~~a~~~~ 324 (829)
|+...+.=
T Consensus 101 i~LKtpdW 108 (146)
T PF08952_consen 101 IRLKTPDW 108 (146)
T ss_dssp EEE-----
T ss_pred EEeCCccH
Confidence 99877653
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.14 E-value=0.18 Score=54.32 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHHHHHHhcccCCeEEEEeC---C--Ccc-cEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCC
Q 003329 262 NEDLRQIFGAYGEVKEIRET---P--HKR-HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 322 (829)
Q Consensus 262 eedL~~iFs~fG~I~~vrit---~--~sr-G~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~ 322 (829)
++++++.+++||.|..|-|. + ... ---||+|...++|.+|+-.|||..|+|+.+...|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 46788999999999988542 1 111 1279999999999999999999999999998877653
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.99 E-value=0.27 Score=48.10 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=60.3
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcH-HH---HHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVED-SE---LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 229 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTe-ee---Lr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 229 (829)
..+...+.+-.||.|+=|..++.. +| +...++.||+|.+|... .+-.|.|.|.|..+|-+|+.+++. ..-|..
T Consensus 77 wkk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 77 WKKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred hcccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 344456778899999877766543 44 45566789999999654 456799999999999999999876 556777
Q ss_pred ccccccC
Q 003329 230 LDIHFSI 236 (829)
Q Consensus 230 L~V~~a~ 236 (829)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7777753
No 180
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.79 E-value=0.18 Score=58.43 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=57.2
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCcHHHHHHHhhc--cCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC--Ccccccc
Q 003329 154 REHPYGEHPSRTLFVRNINSNVEDSELRALFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 229 (829)
Q Consensus 154 ge~~~~e~~srtLfV~NLP~~vTeeeLr~lFs~--fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng--~~l~gr~ 229 (829)
+++....+..+.|+++-||..+.+|+++.||+. +-++.+|... ...+ =||.|++..||+.|.+.|.. +.|.|++
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa-~N~n-WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA-HNDN-WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee-ecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 333444455677888999999999999999984 6677777632 1222 48999999999999998865 4577776
Q ss_pred ccc
Q 003329 230 LDI 232 (829)
Q Consensus 230 L~V 232 (829)
|..
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 653
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.72 E-value=0.21 Score=49.19 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=52.8
Q ss_pred CCCcEEEEeCCC-----CCCcH----HHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 161 HPSRTLFVRNIN-----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 161 ~~srtLfV~NLP-----~~vTe----eeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
.+.-||.|.-+. ...-+ .+|.+.|..||+|.-++.. .+.-+|.|.+-+.|.+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 456677776665 11223 3788899999998877643 3568999999999999999 999999999999
Q ss_pred ccccCCC
Q 003329 232 IHFSIPK 238 (829)
Q Consensus 232 V~~a~pk 238 (829)
|....|.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9876543
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.25 E-value=0.23 Score=53.53 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=55.3
Q ss_pred CcEEEEeCC--CCCCc---HHHHHHHhhccCCEEEEEecC-----Cc-ceEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 163 SRTLFVRNI--NSNVE---DSELRALFEQYGDIRTLYTAC-----KH-RGFVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 163 srtLfV~NL--P~~vT---eeeLr~lFs~fG~I~sv~~t~-----ks-kG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
++.|..+|. +-.++ ++++++.+++||.|..|.+.- .. .--.||+|...++|.+|+-.|||..|.||.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 334555554 22333 467889999999999887421 11 22479999999999999999999999999998
Q ss_pred ccccC
Q 003329 232 IHFSI 236 (829)
Q Consensus 232 V~~a~ 236 (829)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87753
No 183
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.24 E-value=0.3 Score=56.40 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhh-ccCCEEEEEe-----cCCcceEEEEEEcCHHHHHHHHHH
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 219 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs-~fG~I~sv~~-----t~kskG~AFV~F~d~e~A~~Ai~~ 219 (829)
...-++.+||||++||.-++.+||..+|+ -||.|..+-| .+-.+|-|-|.|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34456789999999999999999999999 8999988764 234789999999999999999984
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.07 E-value=0.21 Score=57.10 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=57.9
Q ss_pred ceecccCCCC-CHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEecCCCc
Q 003329 251 LVVFNLDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 251 LfV~NLp~~v-TeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a~~~~ 324 (829)
|-+.-.++.+ |.++|...|.+||+|..|.+.- .--.|.|+|.+..+|-+|-. ..+..|+++.|+|.|.++..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 4444445544 5689999999999999997742 24569999999999977776 58999999999999998865
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.66 E-value=0.12 Score=60.23 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=63.1
Q ss_pred CcccceecccCCCCCHHHHHHHhc-ccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCee---CCcEEEEEecCC
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIKLEPSRP 322 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs-~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i---~Gr~I~V~~a~~ 322 (829)
....|+|.||-.-+|.-+|+.++. ..|.|.+.-+ .+-+.+|||.|.+.++|.+.+.+|||..+ +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 346899999999999999999999 5566666633 34467899999999999999999999865 358899998865
Q ss_pred Cc
Q 003329 323 GG 324 (829)
Q Consensus 323 ~~ 324 (829)
..
T Consensus 522 de 523 (718)
T KOG2416|consen 522 DE 523 (718)
T ss_pred hH
Confidence 44
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.63 E-value=0.58 Score=45.89 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=56.8
Q ss_pred CCCcccceecccCCCCC-HHH---HHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 245 DLNQGTLVVFNLDPSVS-NED---LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 245 ~~~~~tLfV~NLp~~vT-eed---L~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
+..-.||.|+=|..++. .+| +.+.++.||.|.+|...| +.-|.|.|.|..+|-+|+.+++. ...|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34457888876666652 344 455567899999999876 45699999999999999999865 667888888876
Q ss_pred C
Q 003329 321 R 321 (829)
Q Consensus 321 ~ 321 (829)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.88 E-value=0.43 Score=49.11 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=45.7
Q ss_pred CHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCcEEEEEecCCCc
Q 003329 261 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 324 (829)
Q Consensus 261 TeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln--G~~i~Gr~I~V~~a~~~~ 324 (829)
..+.|+++|..|+.+..+...+.- +=..|.|.+.++|.+|...|+ +..+.|..++|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999998888654332 337899999999999999999 999999999999986544
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.41 E-value=0.61 Score=54.25 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcc--cCCeEEEEeCCCcccE
Q 003329 210 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHH 287 (829)
Q Consensus 210 ~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~--fG~I~~vrit~~srG~ 287 (829)
++-..++++..-+..+..+-++|... .+.+.+.++-||.++-.|+++.+|+. +-++++|...-.. -
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--n 214 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--N 214 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--c
Confidence 33334444444444444444444322 23467788999999999999999974 6778888764222 3
Q ss_pred EEEEEcCHHHHHHHHHHhCC--CeeCCcEEEEE
Q 003329 288 KFIEFYDVRAAEAALKSLNR--SDIAGKRIKLE 318 (829)
Q Consensus 288 aFVeF~~~e~A~kAl~~LnG--~~i~Gr~I~V~ 318 (829)
-||+|++..||+.|.+.|.. ++|.||+|...
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 69999999999999988864 47888877654
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.40 E-value=0.37 Score=49.18 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhc-cCCE---EEEE--e-----cCCcceEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 229 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~-fG~I---~sv~--~-----t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~ 229 (829)
....+|.||+||+..|++++.+.+.. +++- ..+. . ....-.-|||.|.+.+++......++|..|.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34579999999999999999998887 6765 3333 1 1112345999999999999999999998876433
Q ss_pred -----ccccccC
Q 003329 230 -----LDIHFSI 236 (829)
Q Consensus 230 -----L~V~~a~ 236 (829)
..|++|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 3455554
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.70 E-value=0.33 Score=53.45 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred cccceecccCCCCCHHHHHHHhcccC--CeEEE-----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG--~I~~v-----rit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
.-++||+||-..+|++||.+....-| .+.++ |..+.+||||+|...+..+.++.++.|-.++|.|..-.|-..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34799999999999999999887665 23333 456889999999999999999999999999999976555433
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.69 E-value=0.4 Score=56.14 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=56.3
Q ss_pred CCCCCCCcEEEEeCCCCCCcHHHHHHHhh-ccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCc
Q 003329 157 PYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 224 (829)
Q Consensus 157 ~~~e~~srtLfV~NLP~~vTeeeLr~lFs-~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~ 224 (829)
+.....+..|+|.||=.-.|.-+|+.|+. ..|.|.... ..+-+-.|||.|.+.++|.....+|+|..
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W-mDkIKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW-MDKIKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHH-HHHhhcceeEecccHHHHHHHHHHHhccc
Confidence 34566788999999999999999999999 566777664 35567789999999999999999999754
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.53 E-value=1.8 Score=38.94 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=40.8
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 306 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~Ln 306 (829)
...+|. .|..+...||.++|+.||.|.---+. ..-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 345555 89999999999999999987655553 2359999999999999999885
No 193
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.33 E-value=0.58 Score=52.37 Aligned_cols=71 Identities=23% Similarity=0.529 Sum_probs=56.9
Q ss_pred ccceecccCCCCCHHHHHHHhcccCCeEEEEeCCC--------cccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 249 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 249 ~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~--------srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
+.|.|.||.++.|.++++.+|.-.|+|.++++.+. ..-.|||.|.|...+..|-. |..+.+=++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47899999999999999999999999999987542 24479999999999988876 5566555665555443
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.67 E-value=1.9 Score=36.62 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=41.4
Q ss_pred cccceecccCCCCCHHHHHHHhccc----CCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHh
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~f----G~I~~vrit~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
..+|+|++++ +++.++++.+|..| + ...|.-.... -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 3579999985 68999999999998 3 3444432222 3889999999999999875
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.22 E-value=0.48 Score=52.27 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=60.8
Q ss_pred CcccceecccCCCCCHHHH---HHHhcccCCeEEEEeCCCc--------ccEEEEEEcCHHHHHHHHHHhCCCeeCCcEE
Q 003329 247 NQGTLVVFNLDPSVSNEDL---RQIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 315 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL---~~iFs~fG~I~~vrit~~s--------rG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I 315 (829)
...-+||-+|+..+..+++ .+.|.+||.|.+|...... -.-++|+|...++|..||...+|...+|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3456788889887755554 3478999999999764321 1128999999999999999999999999998
Q ss_pred EEEecCCCc
Q 003329 316 KLEPSRPGG 324 (829)
Q Consensus 316 ~V~~a~~~~ 324 (829)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 888776654
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=3.2 Score=45.35 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=55.6
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc-EEEEEecCCC
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 323 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr-~I~V~~a~~~ 323 (829)
+.=+.|.+.++.-. .-|..+|++||+|.+.... .+..+-+|+|..+-+|++||.. ||+.|+|. -|-|+.+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 44577788877644 4566789999999887654 5667899999999999999984 89999884 4455554443
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.00 E-value=3.6 Score=37.09 Aligned_cols=55 Identities=15% Similarity=0.325 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 222 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng 222 (829)
...+|. .|......||.++|+.||.|.--.+ ...-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 455666 9999999999999999999885555 345799999999999999998754
No 198
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.83 E-value=1.3 Score=47.29 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=52.0
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhccCCEEEEE----ecCCcceEEEEEEcCHHHHHHHHHHhcCC
Q 003329 164 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNK 223 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~----~t~kskG~AFV~F~d~e~A~~Ai~~Lng~ 223 (829)
..|+|.||..-+..+.|.+-|+.||+|.... ..++..+-++|.|...-.|.+|++.+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 7899999999999999999999999987543 35677788999999999999999977443
No 199
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.73 E-value=3.7 Score=34.93 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCcHHHHHHHhhcc----CCEEEEE-ecCCcceEEEEEEcCHHHHHHHHHHh
Q 003329 164 RTLFVRNINSNVEDSELRALFEQY----GDIRTLY-TACKHRGFVMISYYDIRAARTAMRAL 220 (829)
Q Consensus 164 rtLfV~NLP~~vTeeeLr~lFs~f----G~I~sv~-~t~kskG~AFV~F~d~e~A~~Ai~~L 220 (829)
.+|+|+++. +++.++|+.+|..| +.. .|. +. ---|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 579999995 68899999999999 532 232 22 234678999999999999864
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.64 E-value=0.73 Score=50.91 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=60.1
Q ss_pred CcEEEEeCCCCCCcHHHHH---HHhhccCCEEEEEecCC------cce--EEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003329 163 SRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACK------HRG--FVMISYYDIRAARTAMRALQNKPLRRRKLD 231 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr---~lFs~fG~I~sv~~t~k------skG--~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~ 231 (829)
..-+||-+|+..+.++++. +.|.+||.|..|.+... +.+ -++|.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888898887666654 68999999999874331 112 289999999999999999999999999988
Q ss_pred ccccCCC
Q 003329 232 IHFSIPK 238 (829)
Q Consensus 232 V~~a~pk 238 (829)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877543
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.61 E-value=1.4 Score=45.28 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=45.4
Q ss_pred cHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhc--CCccccccccccccCC
Q 003329 176 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 237 (829)
Q Consensus 176 TeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~p 237 (829)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45889999999999888764 3455668899999999999999999 8999999999998854
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=81.50 E-value=0.73 Score=52.79 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=63.7
Q ss_pred CCCCCcEEEEeCCCCCC-cHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003329 159 GEHPSRTLFVRNINSNV-EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 237 (829)
Q Consensus 159 ~e~~srtLfV~NLP~~v-TeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 237 (829)
-+...+.|-+.-+|... |.++|...|.+||+|..|.+... ---|.|+|.+..+|-+|.. .++..|.++.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34556777777777765 45899999999999999986433 4568999999999988877 789999999999999876
Q ss_pred C
Q 003329 238 K 238 (829)
Q Consensus 238 k 238 (829)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.94 E-value=4.9 Score=34.58 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEE
Q 003329 258 PSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 317 (829)
Q Consensus 258 ~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V 317 (829)
..++-++++..+..|+- ..|+. +..|| ||.|.+.++|+++.+..+|..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35678999999999963 45553 34564 89999999999999999999888777654
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.91 E-value=2.8 Score=45.80 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=49.0
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 228 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr 228 (829)
..=|-|-+.|+. .-.-|..+|++||+|.+.. +.....+-+|.|....+|++||. .+|+.|.|.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 345666777754 3457889999999999884 45566699999999999999998 577776654
No 205
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=78.83 E-value=3.3 Score=40.35 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCcHHHHHHHhhc-cCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCC--ccc
Q 003329 174 NVEDSELRALFEQ-YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN--QGT 250 (829)
Q Consensus 174 ~vTeeeLr~lFs~-fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~--~~t 250 (829)
..+-..|...+.+ ++....+.+..-..++..+.|.+.+++.++++ .....+.+..+.++.-.|...+...... .-=
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vW 106 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVW 106 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchh
Confidence 3455555555543 23222333334467999999999999999987 4445677777777766655544433222 234
Q ss_pred ceecccCCC-CCHHHHHHHhcccCCeEEEEeCC
Q 003329 251 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETP 282 (829)
Q Consensus 251 LfV~NLp~~-vTeedL~~iFs~fG~I~~vrit~ 282 (829)
+.|.|||.. .+++-|+++-+.+|++.+++...
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 667899977 68889999999999999998643
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.45 E-value=1.5 Score=53.53 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.5
Q ss_pred cceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCee--CCcEEEEEecCCC
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI--AGKRIKLEPSRPG 323 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i--~Gr~I~V~~a~~~ 323 (829)
+.++.|..-..+-.-|..+|++||.|.+++... .-..|.|+|...+.|..|+++|+|+++ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 456667777788899999999999999997632 234699999999999999999999975 4778999888753
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.21 E-value=7.7 Score=33.41 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 174 NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 174 ~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.++-++++..+.+|+-.. |. ....|| ||.|.+.++|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~--~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IR--DDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EE--ecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999998543 32 233454 89999999999999999998887766543
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.88 E-value=12 Score=32.60 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHhcccC-----CeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEec
Q 003329 258 PSVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 320 (829)
Q Consensus 258 ~~vTeedL~~iFs~fG-----~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~a 320 (829)
..++..+|..++..-+ .|-.|++. ..|.||+-.. +.|.+++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4567788888887654 45566764 4589999765 4788999999999999999999865
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=72.67 E-value=24 Score=33.41 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCC-EEEEEe--cCC-cceEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT--ACK-HRGFVMISYYDIRAARTAMRALQNKPLRR 227 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~-I~sv~~--t~k-skG~AFV~F~d~e~A~~Ai~~Lng~~l~g 227 (829)
.....+.+-..|..++-++|..+.+.+-+ |..+++ ++. .+=-+.++|.+.++|+...+.+||+.|..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33445555555666666777766666643 445553 333 33359999999999999999999998753
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=72.47 E-value=2.5 Score=50.52 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=61.2
Q ss_pred CcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCcEEEEEe
Q 003329 247 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 319 (829)
Q Consensus 247 ~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr~I~V~~ 319 (829)
...++||+|+-..+..+-++.+...+|.|.++.... |||.+|.....+.+|+..|.-..++|+.+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999999986532 999999999999999999998899888776654
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=69.86 E-value=2.4 Score=51.86 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=59.1
Q ss_pred EEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccc--cccccccccCCC
Q 003329 165 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPK 238 (829)
Q Consensus 165 tLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk 238 (829)
+.++-|.+-..+-.-|..+|.+||+|.+.+. -+..-.|.|+|...+.|..|+.+|+|+.+. |-+.+|.++++-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455566667888899999999999999863 345667999999999999999999998864 777788887653
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=65.91 E-value=4.4 Score=48.52 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003329 160 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 234 (829)
Q Consensus 160 e~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~ 234 (829)
..+..++||+||-..+..+-++.+...+|-|.+++... |+|..|.....+.+|+..+....+.++.+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34578999999999999999999999999999886322 999999999999999999998889888877654
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.15 E-value=75 Score=35.09 Aligned_cols=146 Identities=14% Similarity=0.275 Sum_probs=91.5
Q ss_pred CCCcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCC------------cceEEEEEEcCHHHHHHHHHH----hcC--
Q 003329 161 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------HRGFVMISYYDIRAARTAMRA----LQN-- 222 (829)
Q Consensus 161 ~~srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~k------------skG~AFV~F~d~e~A~~Ai~~----Lng-- 222 (829)
--+|.|...|+..+++--++...|.+||.|++|++... ......+.|.+.+.|...... |..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999995332 246789999999888765432 222
Q ss_pred CccccccccccccCCCCCC------CCCC----------------CCcccceecccCCCC-CHHHHHHHh---cccCC--
Q 003329 223 KPLRRRKLDIHFSIPKDNP------SDKD----------------LNQGTLVVFNLDPSV-SNEDLRQIF---GAYGE-- 274 (829)
Q Consensus 223 ~~l~gr~L~V~~a~pk~~~------~~~~----------------~~~~tLfV~NLp~~v-TeedL~~iF---s~fG~-- 274 (829)
+.+....|.+.|..-+-.. .+.. ...+.|.|. +...+ +++-+.+.+ ..=+.
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 3356677777765321100 0001 112345544 22333 333333333 12232
Q ss_pred --eEEEEeC-------CCcccEEEEEEcCHHHHHHHHHHhCC
Q 003329 275 --VKEIRET-------PHKRHHKFIEFYDVRAAEAALKSLNR 307 (829)
Q Consensus 275 --I~~vrit-------~~srG~aFVeF~~~e~A~kAl~~LnG 307 (829)
|++|.+. .-.+.||.+.|-+...|.+.+.-|.-
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 3444431 11367999999999999999987753
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.35 E-value=5.5 Score=36.24 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=44.1
Q ss_pred EEEEEcCHHHHHHHHHHhcC-CccccccccccccCCCCCC-----CCCCCCcccceecccCCCCCHHHHHHHhc
Q 003329 203 VMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIFG 270 (829)
Q Consensus 203 AFV~F~d~e~A~~Ai~~Lng-~~l~gr~L~V~~a~pk~~~-----~~~~~~~~tLfV~NLp~~vTeedL~~iFs 270 (829)
|+|.|.+..-|++-++.-.. ..+.+..+.|....-.... .......++|.|+|||..+.+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998873211 2244555544432111110 11234567999999999999999998654
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.60 E-value=16 Score=41.44 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=43.7
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHH
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 218 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~ 218 (829)
-..|=|-++|.....+||...|+.|+. ..+++.-...-.||-.|.....|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh
Confidence 478999999999999999999999985 1222222234568999999999999987
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=56.86 E-value=15 Score=37.77 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=49.2
Q ss_pred cceecccCCCC-C----HHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCc-EEEEEecCCC
Q 003329 250 TLVVFNLDPSV-S----NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 323 (829)
Q Consensus 250 tLfV~NLp~~v-T----eedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~Gr-~I~V~~a~~~ 323 (829)
++.+.+++..+ + ......+|.+|-+....++. ++.+..-|.|.+.+.|..|...+++..+.|+ .+++-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 34555555443 1 22345566655544443332 2344567899999999999999999999998 8888788775
Q ss_pred c
Q 003329 324 G 324 (829)
Q Consensus 324 ~ 324 (829)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=53.23 E-value=38 Score=29.39 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHhhccCC-----EEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003329 173 SNVEDSELRALFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 235 (829)
Q Consensus 173 ~~vTeeeLr~lFs~fG~-----I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V~~a 235 (829)
..++..+|..++..-+. |..|.+ ..-|+||+-... .|+++++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887653 556655 346788887654 888999999999999999998753
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.14 E-value=1.3e+02 Score=36.04 Aligned_cols=130 Identities=14% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEeCCCCC-CcHHHHHHHhhcc----CCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003329 158 YGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 232 (829)
Q Consensus 158 ~~e~~srtLfV~NLP~~-vTeeeLr~lFs~f----G~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr~L~V 232 (829)
.....+++|-|-|+.|+ +...+|.-+|..| |.|.+|.+-.. +|- ...|..-.+.|.++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS-------eFG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS-------EFG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh-------hhh--------HHHhhhhcccCChhhh
Confidence 44667899999999987 7889999999976 47888875221 111 1123333444544333
Q ss_pred cccCCCCCCCCCCCCcccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-
Q 003329 233 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA- 311 (829)
Q Consensus 233 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~~LnG~~i~- 311 (829)
- .+........ -+...-++-.++-+.+|+ +.. .+--||.|+|++++.|.+.....+|.++.
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq-~~r-----LkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQ-LNR-----LKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHH-hhh-----heeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 2 1111111110 011111111233444443 111 12347999999999999999999999886
Q ss_pred -CcEEEEEec
Q 003329 312 -GKRIKLEPS 320 (829)
Q Consensus 312 -Gr~I~V~~a 320 (829)
+..|-+.|-
T Consensus 296 S~~~~DLRFI 305 (650)
T KOG2318|consen 296 SANKLDLRFI 305 (650)
T ss_pred ccceeeeeec
Confidence 456666554
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.51 E-value=21 Score=38.67 Aligned_cols=74 Identities=18% Similarity=0.387 Sum_probs=46.7
Q ss_pred ccceecccCCC------------CCHHHHHHHhcccCCeEEEEe----------CCCc-----ccE---------EEEEE
Q 003329 249 GTLVVFNLDPS------------VSNEDLRQIFGAYGEVKEIRE----------TPHK-----RHH---------KFIEF 292 (829)
Q Consensus 249 ~tLfV~NLp~~------------vTeedL~~iFs~fG~I~~vri----------t~~s-----rG~---------aFVeF 292 (829)
.||++.+||-. .+++-|+..|+.||.|..|.| +++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888877742 357889999999999998854 2222 233 44666
Q ss_pred cCHHHHHHHHHHhCCCee----CC----cEEEEEecCC
Q 003329 293 YDVRAAEAALKSLNRSDI----AG----KRIKLEPSRP 322 (829)
Q Consensus 293 ~~~e~A~kAl~~LnG~~i----~G----r~I~V~~a~~ 322 (829)
.....-..|+.+|.|..+ +| -.++|.|.+.
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 655555666666666543 23 2456665544
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.83 E-value=66 Score=36.80 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=43.5
Q ss_pred cccceecccCCCCCHHHHHHHhcccCCeEEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 003329 248 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 303 (829)
Q Consensus 248 ~~tLfV~NLp~~vTeedL~~iFs~fG~I~~vrit~~srG~aFVeF~~~e~A~kAl~ 303 (829)
...|-|.++|.....+||...|+.|+. +.++|.-....++|-.|.....|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh
Confidence 357889999999999999999999964 2333322234579999999999999997
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.12 E-value=1.1e+02 Score=35.55 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=51.1
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccC-CEEEEEe--cCCcce-EEEEEEcCHHHHHHHHHHhcCCccc
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT--ACKHRG-FVMISYYDIRAARTAMRALQNKPLR 226 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG-~I~sv~~--t~kskG-~AFV~F~d~e~A~~Ai~~Lng~~l~ 226 (829)
++.|+|--+|..++-.||..+...+- .|..+++ .+.... .++|.|.+..+|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 89999999999999999999887653 2444442 333333 4899999999999999999998874
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.90 E-value=74 Score=28.78 Aligned_cols=56 Identities=14% Similarity=0.360 Sum_probs=41.3
Q ss_pred cceecccCCCCCHHHHHHHhcc-cC-CeEEEEeC--CCcccEEEEEEcCHHHHHHHHHHh
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRET--PHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~-fG-~I~~vrit--~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
+-|+.-++...+..++++.++. || .|.+|+.. +...--|||.+..-..|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5677778999999999999986 56 56777542 222234999999988888776543
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.67 E-value=19 Score=39.08 Aligned_cols=62 Identities=27% Similarity=0.495 Sum_probs=44.3
Q ss_pred cEEEEeCCCCC------------CcHHHHHHHhhccCCEEEEEe----------cCCc-----ceE---------EEEEE
Q 003329 164 RTLFVRNINSN------------VEDSELRALFEQYGDIRTLYT----------ACKH-----RGF---------VMISY 207 (829)
Q Consensus 164 rtLfV~NLP~~------------vTeeeLr~lFs~fG~I~sv~~----------t~ks-----kG~---------AFV~F 207 (829)
.||++.+||-. -+++-|+..|+.||+|+.|.+ +++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46777777743 357889999999999999872 3332 233 46777
Q ss_pred cCHHHHHHHHHHhcCCcc
Q 003329 208 YDIRAARTAMRALQNKPL 225 (829)
Q Consensus 208 ~d~e~A~~Ai~~Lng~~l 225 (829)
.....-..||.+|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 777777788888887664
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.29 E-value=89 Score=34.30 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=37.2
Q ss_pred CcEEEEeCCCCCCcHHHHHHHhhccCCEE-EEEecCCcceEEEEEEcCHH
Q 003329 163 SRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIR 211 (829)
Q Consensus 163 srtLfV~NLP~~vTeeeLr~lFs~fG~I~-sv~~t~kskG~AFV~F~d~e 211 (829)
.+-|+|+||+.++--.||+..+.+-|.+- ++.- .-+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 45699999999999999999999877543 2322 346788999997743
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.01 E-value=34 Score=35.24 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCcH-----HHHHHHhhccCCEEEEEecCCcceEEEEEEcCHHHHHHHHHHhcCCccccc-cccccccC
Q 003329 163 SRTLFVRNINSNVED-----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSI 236 (829)
Q Consensus 163 srtLfV~NLP~~vTe-----eeLr~lFs~fG~I~sv~~t~kskG~AFV~F~d~e~A~~Ai~~Lng~~l~gr-~L~V~~a~ 236 (829)
.+++++.+|+..+-. .....+|.+|-+.....+ -++.+..-|.|.+++.|..|...++...|.|+ .++.-++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 456778888765432 234566666665544432 35677889999999999999999999999988 77777765
Q ss_pred CC
Q 003329 237 PK 238 (829)
Q Consensus 237 pk 238 (829)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 43
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.23 E-value=92 Score=27.70 Aligned_cols=56 Identities=16% Similarity=0.373 Sum_probs=40.3
Q ss_pred cceecccCCCCCHHHHHHHhcc-cC-CeEEEEeC--CCcccEEEEEEcCHHHHHHHHHHh
Q 003329 250 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRET--PHKRHHKFIEFYDVRAAEAALKSL 305 (829)
Q Consensus 250 tLfV~NLp~~vTeedL~~iFs~-fG-~I~~vrit--~~srG~aFVeF~~~e~A~kAl~~L 305 (829)
+-|+..++...+..++++.++. || .|.+|+.. +...--|||.+..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 5678888999999999998886 55 56666532 222234999998888887765443
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.68 E-value=1.5e+02 Score=26.75 Aligned_cols=55 Identities=9% Similarity=0.184 Sum_probs=39.6
Q ss_pred EEEeCCCCCCcHHHHHHHhhc-cC-CEEEEEecCCcce--EEEEEEcCHHHHHHHHHHh
Q 003329 166 LFVRNINSNVEDSELRALFEQ-YG-DIRTLYTACKHRG--FVMISYYDIRAARTAMRAL 220 (829)
Q Consensus 166 LfV~NLP~~vTeeeLr~lFs~-fG-~I~sv~~t~kskG--~AFV~F~d~e~A~~Ai~~L 220 (829)
-|+=.++.+++..++++.++. || .|.+|.+.....| =|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344445689999999999997 55 5677764333345 4999999998888875543
No 228
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=23.03 E-value=2e+02 Score=32.35 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHhhCCCcccEEEeeccccccceeEE-----EEEecCCcccHHHHHHHhcCCcccCCCCccEEEEEeeec
Q 003329 676 KYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGY-----AFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARI 750 (829)
Q Consensus 676 k~t~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gy-----aFinf~~~~~~~~f~~~f~g~~w~~~~s~k~~~v~~A~i 750 (829)
+++++.|+++|+-...-.|+- ..=|| |-.-| --||=++-..-.++...|-.+.... .---|-.+.+..+
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplTh-p~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTH-PRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhccccC-ceeEEEEeecccc
Confidence 568999999999776544442 11222 33333 2355555545555556666554321 1123334455555
Q ss_pred ccHHHHHHHhccCcCCCCCCCccceEEcCC
Q 003329 751 QGRAALVAHFQNSSLMNEDKRCRPILFHSE 780 (829)
Q Consensus 751 QG~~~l~~~f~~s~~~~~~~~~~P~~f~~~ 780 (829)
.|. .|.+||||.--|.....| |+||+++
T Consensus 317 RaP-~LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAP-RLAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cch-hHHHHHhhhhhhcCcccC-cccccce
Confidence 554 489999998877655555 7777665
Done!